BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039029
         (319 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/347 (70%), Positives = 284/347 (81%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+RGV+PDSYTYGS +SGMCK G+LEEAS +LE+MKE GL+PTAVTYNTLIDGYCNKG+
Sbjct: 297 MKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGD 356

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF +RDEMV++ I+PT STYNLLIH L +E KM EAD M+K+MG+ GIVPDSITYNI
Sbjct: 357 LVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNI 416

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCRCGNAKKAF+LHDEMI KGIQPT++TYTSLI+VLSK+NRM  AD LFE  + +G
Sbjct: 417 LINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREG 476

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++MFNALIDGHC NGN++RAF+LLKEMD+  + PDEVTYNTLM GRCR+GKVEEAR
Sbjct: 477 ASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEAR 536

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            LL +MKRRGI+PDHIS                            FNPT LTYNALIQGL
Sbjct: 537 ELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGL 596

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           CKNQ+GDLAEELL+EMVSKGITPDD+TYFSLIEGI  VD ++E+S+S
Sbjct: 597 CKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEASDS 643



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 153/295 (51%), Gaps = 7/295 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S  +   +   C+  R ++A    + MKE G+VP   T+N ++  +      E  +    
Sbjct: 166 SIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYA 225

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM +  I  T  T+N++I+ L  E K+ +A D +  M   G+ P+ +TYN +I+GYC  G
Sbjct: 226 EMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRG 285

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
             + A  + D M ++G++P   TY SLI  + K  ++ EA  + E     G+LP  V +N
Sbjct: 286 RVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYN 345

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LIDG+C  G++ +AF    EM R  + P   TYN L+H    +GK++EA  ++  M   
Sbjct: 346 TLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDS 405

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           GI PD I       TYN LI G C+      A  L  EM+SKGI P   TY SLI
Sbjct: 406 GIVPDSI-------TYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLI 453



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 135/275 (49%), Gaps = 7/275 (2%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           +++ ++ LI   C     + AF   D M ++G++P   T+N ++   L   +      + 
Sbjct: 165 SSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLY 224

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            EM    I     T+NI+IN  C+ G  KKA      M + G++P ++TY ++I     +
Sbjct: 225 AEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSR 284

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            R+  A  + +    +G+ PD   + +LI G C  G +E A  +L++M  + + P  VTY
Sbjct: 285 GRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTY 344

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           NTL+ G C +G + +A    D+M RR I        PT  TYN LI  L    + D A+ 
Sbjct: 345 NTLIDGYCNKGDLVKAFGYRDEMVRRAIL-------PTVSTYNLLIHALFLEGKMDEADG 397

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           ++++M   GI PD  TY  LI G      A ++ N
Sbjct: 398 MIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFN 432


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/339 (69%), Positives = 279/339 (82%), Gaps = 28/339 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RGV+PDSYTYGSF+SGMCKEG+LEEAS MLE+MKE GL PTAVTYNTLIDGYCNKGN
Sbjct: 252 MKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGN 311

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LEMAF +RD+MV++G+MPT STYN+LIH L ++ KM EAD ++KEM EKG+VPDS+TYNI
Sbjct: 312 LEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNI 371

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCRCGN KKAF+LHDEMI KGIQPT +TYTSLI+VLSK+ RM +AD LFE  + KG
Sbjct: 372 LINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKG 431

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++MFNALIDGHC NGN++RAF++LKEMD+MKV PDEVT+NTLM GRCR+GKVE AR
Sbjct: 432 IFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAR 491

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            L+++MK RGIKPDHIS                            FNPT LTYNALIQGL
Sbjct: 492 ELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGL 551

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           CKN+EGD AE+LL+EM+SKGITP+DNTY SLIEGI +V+
Sbjct: 552 CKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNVE 590



 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/329 (36%), Positives = 188/329 (57%), Gaps = 28/329 (8%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++    T+   ++ +CKEG+L++A   +  M+  G+ P  VTYNT+I GYC++G +E A 
Sbjct: 187 IKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGAR 246

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              D M  +G+ P + TY   I  +  E K+ EA  ML++M E G+ P ++TYN LI+GY
Sbjct: 247 MIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGY 306

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  GN + AF   D+M+ +G+ PT+ TY  LI  L    +M EAD + +    KG++PD 
Sbjct: 307 CNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDS 366

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N LI+G+C  GN+++AF+L  EM    + P  VTY +L++   ++G++++A  L ++
Sbjct: 367 VTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEK 426

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
           + R+GI PD I FN                            P  +T+N L+QG C+  +
Sbjct: 427 IVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGK 486

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + A EL+ EM S+GI PD  +Y +LI G
Sbjct: 487 VEAARELIEEMKSRGIKPDHISYNTLISG 515



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 148/292 (50%), Gaps = 7/292 (2%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y   +   C+  R ++A    + MK  G++P     N ++  +      E A+    EM 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           +  I  +  T+N++I+ L  E K+ +A + +  M   GI P+ +TYN +I+GYC  G  +
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A  + D M  +G++P   TY S I  + K+ ++ EA  + E     G+ P  V +N LI
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           DG+C  GN+E AF    +M R  + P   TYN L+H      K++EA  ++ +M  +G+ 
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLV 363

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           PD +       TYN LI G C+      A  L  EM+SKGI P   TY SLI
Sbjct: 364 PDSV-------TYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLI 408



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 132/265 (49%), Gaps = 7/265 (2%)

Query: 42  VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           + T V Y+ LI   C     + AF   D M  +G++P     N ++   L   +  +A  
Sbjct: 118 IKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWV 177

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +  EM    I    +T+NI+IN  C+ G  KKA      M   GI+P ++TY ++I    
Sbjct: 178 LYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYC 237

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
            + R+  A  +F+    +G+ PD   + + I G C  G +E A  +L++M  + + P  V
Sbjct: 238 SRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAV 297

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TYNTL+ G C +G +E A    D+M R G+        PT  TYN LI  L  + + D A
Sbjct: 298 TYNTLIDGYCNKGNLEMAFDYRDKMVREGLM-------PTVSTYNMLIHALFLDCKMDEA 350

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
           + +++EM  KG+ PD  TY  LI G
Sbjct: 351 DGIIKEMSEKGLVPDSVTYNILING 375



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 7/169 (4%)

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T + Y  LI    +  R  +A + F+    KG++P +   N ++     +   E+A+ L 
Sbjct: 120 TYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLY 179

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            EM RM++    VT+N +++  C++GK+++A+  +  M+  GIKP+ +       TYN +
Sbjct: 180 AEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVV-------TYNTI 232

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           I G C     + A  +   M  +G+ PD  TY S I G+    K  E+S
Sbjct: 233 IHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEAS 281


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/347 (68%), Positives = 279/347 (80%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PDSYTYGS +SGMCKEGRLEEAS + ++M E GLVP AVTYNTLIDGYCNKG+
Sbjct: 310 MRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD 369

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AFS+RDEMVK+GIMP+ STYNLL+H L ME +M EADDM+KEM +KGI+PD+ITYNI
Sbjct: 370 LERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNI 429

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY RCGNAKKAF LH+EM+ KGI+PT +TYTSLI+VLS++NRM EAD LFE  L +G
Sbjct: 430 LINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG 489

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++MFNA++DGHC NGN+ERAF LLKEMDR  V PDEVT+NTLM GRCR+GKVEEAR
Sbjct: 490 VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEAR 549

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            LLD+MKRRGIKPDHIS                            FNPT LTYNALI+ L
Sbjct: 550 MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCL 609

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           CKNQEGDLAEELL+EMV+KGI+PDD+TY SLIEG+ +VD   E + S
Sbjct: 610 CKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVEDNAS 656



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 169/309 (54%), Gaps = 7/309 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S  +   V   C+  R +EA +    MKE G+VP   T N ++  +     +EMA+    
Sbjct: 179 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 238

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM +  I  T  T+N++++ L  E K+ +A + +  M   G  P+ ++YN +I+GY   G
Sbjct: 239 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 298

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           N + A  + D M  KGI+P   TY SLI  + K+ R+ EA  LF+  +  G++P+ V +N
Sbjct: 299 NIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN 358

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LIDG+C  G++ERAFS   EM +  + P   TYN L+H    +G++ EA  ++ +M+++
Sbjct: 359 TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK 418

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           GI PD I       TYN LI G  +      A +L  EM+SKGI P   TY SLI  ++ 
Sbjct: 419 GIIPDAI-------TYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 471

Query: 310 VDKAAESSN 318
            ++  E+ +
Sbjct: 472 RNRMKEADD 480



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 7/275 (2%)

Query: 42  VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           V +++ ++ L+   C     + AF     M ++GI+P   T N ++   L   +M  A  
Sbjct: 176 VKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWV 235

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +  EM    I     T+NI++N  C+ G  KKA      M   G +P +++Y ++I   S
Sbjct: 236 LYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 295

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
            +  +  A ++ +    KG+ PD   + +LI G C  G +E A  L  +M  + + P+ V
Sbjct: 296 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 355

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TYNTL+ G C +G +E A    D+M ++GI        P+  TYN L+  L        A
Sbjct: 356 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIM-------PSVSTYNLLVHALFMEGRMGEA 408

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +++++EM  KGI PD  TY  LI G +    A ++
Sbjct: 409 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKA 443


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/347 (68%), Positives = 279/347 (80%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PDSYTYGS +SGMCKEGRLEEAS + ++M E GLVP AVTYNTLIDGYCNKG+
Sbjct: 288 MRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AFS+RDEMVK+GIMP+ STYNLL+H L ME +M EADDM+KEM +KGI+PD+ITYNI
Sbjct: 348 LERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNI 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY RCGNAKKAF LH+EM+ KGI+PT +TYTSLI+VLS++NRM EAD LFE  L +G
Sbjct: 408 LINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++MFNA++DGHC NGN+ERAF LLKEMDR  V PDEVT+NTLM GRCR+GKVEEAR
Sbjct: 468 VSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEAR 527

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            LLD+MKRRGIKPDHIS                            FNPT LTYNALI+ L
Sbjct: 528 MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCL 587

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           CKNQEGDLAEELL+EMV+KGI+PDD+TY SLIEG+ +VD   E + S
Sbjct: 588 CKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVEDNAS 634



 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 169/309 (54%), Gaps = 7/309 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S  +   V   C+  R +EA +    MKE G+VP   T N ++  +     +EMA+    
Sbjct: 157 SIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYA 216

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM +  I  T  T+N++++ L  E K+ +A + +  M   G  P+ ++YN +I+GY   G
Sbjct: 217 EMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRG 276

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           N + A  + D M  KGI+P   TY SLI  + K+ R+ EA  LF+  +  G++P+ V +N
Sbjct: 277 NIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN 336

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LIDG+C  G++ERAFS   EM +  + P   TYN L+H    +G++ EA  ++ +M+++
Sbjct: 337 TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKK 396

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           GI PD I       TYN LI G  +      A +L  EM+SKGI P   TY SLI  ++ 
Sbjct: 397 GIIPDAI-------TYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 449

Query: 310 VDKAAESSN 318
            ++  E+ +
Sbjct: 450 RNRMKEADD 458



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 135/275 (49%), Gaps = 7/275 (2%)

Query: 42  VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           V +++ ++ L+   C     + AF     M ++GI+P   T N ++   L   +M  A  
Sbjct: 154 VKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWV 213

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +  EM    I     T+NI++N  C+ G  KKA      M   G +P +++Y ++I   S
Sbjct: 214 LYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 273

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
            +  +  A ++ +    KG+ PD   + +LI G C  G +E A  L  +M  + + P+ V
Sbjct: 274 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 333

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TYNTL+ G C +G +E A    D+M ++GI        P+  TYN L+  L        A
Sbjct: 334 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIM-------PSVSTYNLLVHALFMEGRMGEA 386

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +++++EM  KGI PD  TY  LI G +    A ++
Sbjct: 387 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKA 421


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/347 (67%), Positives = 278/347 (80%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PDSYTYGS +SGMCKEGRLEEAS + ++M E GLVP AVTYNTLIDGYCNKG+
Sbjct: 234 MRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGD 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AFS+RDEMVK+GIMP+ STYNLL+H L ME +M EADDM+KEM +KGI+PD+ITYNI
Sbjct: 294 LERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNI 353

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY RCGNAK+AF LH+EM+ KGI+PT +TYTSLI+VLS++NRM EAD LFE  L +G
Sbjct: 354 LINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG 413

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++MFNA+IDGHC NGN+ERAF LLKEMDR  V PDEVT+NTLM GRCR+GKVEEAR
Sbjct: 414 VSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEAR 473

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            LLD+MK RGIKPDHIS                            FNPT LTYNALI+ L
Sbjct: 474 MLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCL 533

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           CKNQEGDLAEELL+EMV+KGI+PDD+TY SLIEG+ +VD   E + S
Sbjct: 534 CKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVEDNAS 580



 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 131/228 (57%), Gaps = 7/228 (3%)

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
           L+E K+ +A + +  M   G  P+ ++YN +I+GY   GN + A  + D M  KGI+P  
Sbjct: 184 LLEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDS 243

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            TY SLI  + K+ R+ EA  LF+  +  G++P+ V +N LIDG+C  G++ERAFS   E
Sbjct: 244 YTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDE 303

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M +  + P   TYN L+H    +G++ EA  ++ +M+++GI PD I       TYN LI 
Sbjct: 304 MVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAI-------TYNILIN 356

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           G  +      A +L  EM+SKGI P   TY SLI  ++  ++  E+ +
Sbjct: 357 GYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADD 404



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 19/126 (15%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCR------------QGKVEEARRLLDQMKRRGI 251
           A  LLK++   ++  +   ++ L   R R            +GK+++AR  +  M+  G 
Sbjct: 145 ALQLLKQVMETRIATNRELFDELTLSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLGF 204

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           KP+ +S       YN +I G       + A  +L  M  KGI PD  TY SLI G+    
Sbjct: 205 KPNVVS-------YNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 257

Query: 312 KAAESS 317
           +  E+S
Sbjct: 258 RLEEAS 263


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/347 (64%), Positives = 273/347 (78%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + ++PDS+TYGS +SGMCK+GRLEEAS++ E+M + GL P+AV YNTLIDG+CNKGN
Sbjct: 282 MKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGN 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+MA +++DEM+K+GI PT STYN LIH L ME++  EA+ M+KE+ EKGI PD+ITYNI
Sbjct: 342 LDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNI 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCRC NAKKAF LHDEM+  GI+PT  TYTSL+ VLSK+NRM EAD LF+   ++G
Sbjct: 402 LINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++MFNALIDGHC+N N++ AF LLK+MDRMKV PDEVT+NT+M G CR+GKVEEAR
Sbjct: 462 VLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAR 521

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L D+MKRRGIKPDHISFN                            PT LTYNAL+QGL
Sbjct: 522 ELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           CKNQEGDLAEELL+EMVSKG+TPDD TYF+LIEGIA V+   E+ N+
Sbjct: 582 CKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENKNT 628



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S  +   +   C   R +EA      MKE G++PT  T N+L+  +      E A+    
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM +  I  +  T+N++I+ L  E K+ +A D +  M   G+ P+ +TYN +++GYC  G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
             + A ++   M  + I+P   TY SLI  + KQ R+ EA ++FE  + KG+ P  V++N
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LIDG C  GN++ A +   EM +  + P   TYN+L+H    + + +EA  ++ +++ +
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           GI PD I       TYN LI G C+      A  L  EM++ GI P   TY SL+  ++ 
Sbjct: 391 GISPDAI-------TYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSK 443

Query: 310 VDKAAESSN 318
            ++  E+ +
Sbjct: 444 KNRMKEADD 452



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 135/273 (49%), Gaps = 7/273 (2%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           +++ ++ LI   C+    + AF     M ++G++PT  T N L+   L   +   A  + 
Sbjct: 150 SSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            EM    I     T+NI+IN  C+ G  KKA      M   G++P ++TY +++      
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            R+  AD +      + + PD   + +LI G C  G +E A  + +EM +  + P  V Y
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           NTL+ G C +G ++ A    D+M ++GI       +PT  TYN+LI  L   Q  D AE 
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGI-------SPTMSTYNSLIHALFMEQRTDEAEC 382

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +++E+  KGI+PD  TY  LI G      A ++
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKA 415


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/347 (64%), Positives = 272/347 (78%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + ++PDS+TYGS +SGMCK+GRLEEAS++ E+M + GL P+AV YNTLIDG+CNKGN
Sbjct: 282 MKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGN 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+MA +++DEM+K+GI PT STYN LIH L ME++  EA+ M+KE+ EKGI PD+ITYNI
Sbjct: 342 LDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNI 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCRC NAKKAF LHDEM+  GI+PT  TYTSL+ VLSK+NRM EAD LF+   ++G
Sbjct: 402 LINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD +MFNALIDGHC+N N++ AF LLK+MDRMKV PDEVT+NT+M G CR+GKVEEAR
Sbjct: 462 VLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAR 521

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L D+MKRRGIKPDHISFN                            PT LTYNAL+QGL
Sbjct: 522 ELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           CKNQEGDLAEELL+EMVSKG+TPDD TYF+LIEGIA V+   E+ N+
Sbjct: 582 CKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENKNT 628



 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S  +   +   C   R +EA      MKE G++PT  T N+L+  +      E A+    
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM +  I  +  T+N++I+ L  E K+ +A D +  M   G+ P+ +TYN +++GYC  G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
             + A ++   M  + I+P   TY SLI  + KQ R+ EA ++FE  + KG+ P  V++N
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LIDG C  GN++ A +   EM +  + P   TYN+L+H    + + +EA  ++ +++ +
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           GI PD I       TYN LI G C+      A  L  EM++ GI P   TY SL+  ++ 
Sbjct: 391 GISPDAI-------TYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSK 443

Query: 310 VDKAAESSN 318
            ++  E+ +
Sbjct: 444 KNRMKEADD 452



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 135/273 (49%), Gaps = 7/273 (2%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           +++ ++ LI   C+    + AF     M ++G++PT  T N L+   L   +   A  + 
Sbjct: 150 SSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            EM    I     T+NI+IN  C+ G  KKA      M   G++P ++TY +++      
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            R+  AD +      + + PD   + +LI G C  G +E A  + +EM +  + P  V Y
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           NTL+ G C +G ++ A    D+M ++GI       +PT  TYN+LI  L   Q  D AE 
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGI-------SPTMSTYNSLIHALFMEQRTDEAEC 382

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +++E+  KGI+PD  TY  LI G      A ++
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKA 415


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/339 (65%), Positives = 269/339 (79%), Gaps = 28/339 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G++PD YTY SF+SG+CKEGRLEEAS ++ +M E GLVP AVTYN LIDGYCNKG+
Sbjct: 277 MKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGD 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+++RDEM+ +GIM +  TYNL IH L ME +M +AD+M+KEM EKG++PD++T+NI
Sbjct: 337 LDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNI 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCRCG+AK+AF L DEM+ KGIQPT++TYTSLI+VL K+NRM EAD LF     +G
Sbjct: 397 LINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPDI++FNALIDGHC NGNI+RAF LLKEMD MKV PDE+TYNTLM G CR+GKVEEAR
Sbjct: 457 LLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEAR 516

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LLD+MKRRGIKPDHIS+N                            PT LTYNALIQGL
Sbjct: 517 QLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGL 576

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           CKNQEG+ AEELL+EMVSKGITPDD+TY S+IE + +VD
Sbjct: 577 CKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVD 615



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 158/301 (52%), Gaps = 7/301 (2%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            V   C+  +  EA      +KE G VP   T N ++  +      +MA+    EM +  
Sbjct: 152 LVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMN 211

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I  +  T+N++I+ L  E K+ +A + +  M   G+ P+ +TYN +I+G+C  G  ++A 
Sbjct: 212 IRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRAR 271

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            +   M  KG++P   TY S I  L K+ R+ EA  L    L  G++P+ V +NALIDG+
Sbjct: 272 VIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGY 331

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C  G++++A++   EM    +    VTYN  +H    +G++ +A  ++ +M+ +G+ PD 
Sbjct: 332 CNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDA 391

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           +       T+N LI G C+  +   A  LL EMV KGI P   TY SLI  +   ++  E
Sbjct: 392 V-------THNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKE 444

Query: 316 S 316
           +
Sbjct: 445 A 445



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 118/202 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+QP   TY S +  + K  R++EA  +  ++++ GL+P  + +N LIDG+C  GN
Sbjct: 417 MVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGN 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF    EM    ++P   TYN L+     E K+ EA  +L EM  +GI PD I+YN 
Sbjct: 477 IDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNT 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY + G+ K AF + DEM+  G  PT+LTY +LI  L K      A++L +  ++KG
Sbjct: 537 LISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKG 596

Query: 181 MLPDIVMFNALIDGHCTNGNIE 202
           + PD   + ++I+   T  ++E
Sbjct: 597 ITPDDSTYLSIIEAMETVDDLE 618



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 7/240 (2%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
           T   ++LL+      +K  EA +    + EKG VP+  T N +++ + +    + A+ L+
Sbjct: 145 TTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLY 204

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
            EM    I+ ++ T+  +I VL K+ ++ +A +   +    G+ P++V +N +I GHC  
Sbjct: 205 AEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR 264

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
           G  +RA  + + M    + PD  TYN+ + G C++G++EEA  L+ +M   G+ P+ +  
Sbjct: 265 GKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAV-- 322

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
                TYNALI G C   + D A     EM+SKGI     TY   I  +    +  ++ N
Sbjct: 323 -----TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADN 377


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/346 (59%), Positives = 255/346 (73%), Gaps = 28/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + ++PD YTY SF+S +CKE R+EEAS +L ++ E+GLVP AVTYN LIDG CNKG+
Sbjct: 278 MKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGD 337

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF++RDEM+ +GI+ +  TYNLLIH L +E+++ EA+DM+KEM EKG+ PD +TYNI
Sbjct: 338 LDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            INGYCRCGNAKKA SL DEM+ K I+PT+ TYTSLI V  K+NRM EA++ F+  + +G
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEG 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           MLPDI+MFNALIDGHC NGNI+RAF LLKEMD  KV PDEVT+NTLM G CR+ KVEEA+
Sbjct: 458 MLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAK 517

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LLD+MK RGIKPDHIS+N                            PT LTYNALIQG 
Sbjct: 518 KLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGY 577

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            K  E D AEELLREM SKGITPDD+TY  +IE + + D   E+ +
Sbjct: 578 SKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVENDD 623



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 161/307 (52%), Gaps = 7/307 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           +  +   +S  C+  + +EA   L  MKEN ++P   T N+L+        ++MA+   +
Sbjct: 147 TLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYE 206

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EMVK  I  +  T+N++I+ L  E K  +A D +  M   G+ P+ +TYN +INGYC  G
Sbjct: 207 EMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRG 266

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
             + A  +   M  K ++P   TY S I  L K+ R+ EA  +    L  G++P+ V +N
Sbjct: 267 KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYN 326

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           ALIDG C  G++++AF+   EM    +     TYN L+H    + ++EEA  ++ +M+ +
Sbjct: 327 ALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK 386

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           G++PD +       TYN  I G C+      A  L  EMV K I P   TY SLI+    
Sbjct: 387 GVEPDVV-------TYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGK 439

Query: 310 VDKAAES 316
            ++ +E+
Sbjct: 440 RNRMSEA 446



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 7/117 (5%)

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           I+ A+ + +EM +M +    VT+N +++  CR+GK ++A+  +  M+  G+KP+ +    
Sbjct: 198 IKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVV---- 253

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
              TYN +I G C   + + A ++ + M  K + PD  TY S I  +    +  E+S
Sbjct: 254 ---TYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEAS 307


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/347 (57%), Positives = 254/347 (73%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+G QPD  TY   +S MC EGR   AS +L +MKE GLVP +V+YN LI G  N G+
Sbjct: 286 MKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGD 342

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LEMAF++RDEMVKQG++PT  TYN LIH L ME K+  A+ +++E+ EKGIV DS+TYNI
Sbjct: 343 LEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNI 402

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G+AKKAF+LHDEM+  GIQPT  TYTSLI+VL ++N+  EAD+LFE  + KG
Sbjct: 403 LINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKG 462

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD+VM N L+DGHC  GN++RAFSLLKEMD M ++PD+VTYN LM G C +GK EEAR
Sbjct: 463 MKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEAR 522

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            L+ +MKRRGIKPDHIS                            FNPT LTYNAL++GL
Sbjct: 523 ELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGL 582

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
            KNQEG+LAEELLREM S+GI P+D+++ S+IE ++++D  A+ S+S
Sbjct: 583 SKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLD--AKKSDS 627



 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 185/329 (56%), Gaps = 31/329 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++ + YT+   ++ +CKEG+L++A   L  M+  G+ PT VTYNTL+ G+  +G +E A 
Sbjct: 221 IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGAR 280

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM  +G  P   TYN ++  +  E +   A ++L+EM E G+VPDS++YNILI G 
Sbjct: 281 LIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGC 337

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
              G+ + AF+  DEM+ +G+ PT  TY +LI  L  +N++  A+ L      KG++ D 
Sbjct: 338 SNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDS 397

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N LI+G+C +G+ ++AF+L  EM    + P + TY +L++  CR+ K  EA  L ++
Sbjct: 398 VTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEK 457

Query: 246 MKRRGIKPDHI----------------------------SFNPTRLTYNALIQGLCKNQE 277
           +  +G+KPD +                            S NP  +TYN L++GLC   +
Sbjct: 458 VVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGK 517

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + A EL+ EM  +GI PD  +Y +LI G
Sbjct: 518 FEEARELMGEMKRRGIKPDHISYNTLISG 546



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 148/301 (49%), Gaps = 10/301 (3%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            V   C+   ++EA      MKE G  P   T N ++        +E A+ F  +M +  
Sbjct: 161 LVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRME 220

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I     T+N++I+ L  E K+ +A   L  M   GI P  +TYN L+ G+   G  + A 
Sbjct: 221 IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGAR 280

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            +  EM  KG QP M TY  ++  +  + R   A ++       G++PD V +N LI G 
Sbjct: 281 LIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGC 337

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
             NG++E AF+   EM +  + P   TYNTL+HG   + K+E A  L+ +++ +GI  D 
Sbjct: 338 SNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDS 397

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           +       TYN LI G C++ +   A  L  EM++ GI P   TY SLI  +   +K  E
Sbjct: 398 V-------TYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTRE 450

Query: 316 S 316
           +
Sbjct: 451 A 451



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 10/263 (3%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           + + ++ L+   C    ++ A      M ++G  P   T N ++  L    ++  A    
Sbjct: 154 STILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFY 213

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            +M    I  +  T+NI+IN  C+ G  KKA      M   GI+PT++TY +L+   S +
Sbjct: 214 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLR 273

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            R+  A  +     +KG  PD+  +N ++   C  G   RA  +L+EM  + + PD V+Y
Sbjct: 274 GRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSY 330

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N L+ G    G +E A    D+M ++G+        PT  TYN LI GL    + + AE 
Sbjct: 331 NILIRGCSNNGDLEMAFAYRDEMVKQGMV-------PTFYTYNTLIHGLFMENKIEAAEI 383

Query: 284 LLREMVSKGITPDDNTYFSLIEG 306
           L+RE+  KGI  D  TY  LI G
Sbjct: 384 LIREIREKGIVLDSVTYNILING 406



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 10/195 (5%)

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           +I +++L+   C+     +A      M  KG  P   T   ++ +LS+ NR+  A   + 
Sbjct: 155 TILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYA 214

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           +     +  ++  FN +I+  C  G +++A   L  M+   + P  VTYNTL+ G   +G
Sbjct: 215 DMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRG 274

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           ++E AR ++ +MK +G +PD  ++NP       ++  +C   EG  A E+LREM   G+ 
Sbjct: 275 RIEGARLIISEMKSKGFQPDMQTYNP-------ILSWMC--NEGR-ASEVLREMKEIGLV 324

Query: 295 PDDNTYFSLIEGIAS 309
           PD  +Y  LI G ++
Sbjct: 325 PDSVSYNILIRGCSN 339


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/339 (57%), Positives = 245/339 (72%), Gaps = 31/339 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+G QPD  TY   +S MC EGR   AS +L +MK  GLVP +V+YN LI G  N G+
Sbjct: 287 MKSKGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGD 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF++RDEMVKQG++PT  TYN LIH L ME K+  A+ +++E+ EKGIV DS+TYNI
Sbjct: 344 LETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNI 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +INGYC+ G+AKKAF+LHDEM+  GI+PT  TYTSLI+VL ++N+  EAD+LFE  + KG
Sbjct: 404 VINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD+VM N L+DGHC  GN++RAFSLLKEMDRM + PD+VTYN LM G C +GK EEAR
Sbjct: 464 MKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEAR 523

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            L+ +MKRRGIKPDHIS                            FNPT LTYNAL++GL
Sbjct: 524 ELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGL 583

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            KNQ+G+LAEELLREM S+GI P+D+++ S+IE ++  D
Sbjct: 584 SKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSKSD 622



 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 183/329 (55%), Gaps = 31/329 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++ + YT+   ++ +CKEG+L++A   L  M+  G+ PT VTYNTL+ GY  +G +E A 
Sbjct: 222 IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGAR 281

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM  +G  P   TYN ++  +  E +   A ++L+EM   G+VPDS++YNILI G 
Sbjct: 282 MIISEMKSKGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGC 338

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
              G+ + AF+  DEM+ +G+ PT  TY +LI  L  +N++  A+ L      KG++ D 
Sbjct: 339 SNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDS 398

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N +I+G+C +G+ ++AF+L  EM    + P + TY +L++  CR+ K  EA  L ++
Sbjct: 399 VTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEK 458

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
           +  +G+KPD +  N                            P  +TYN L++GLC   +
Sbjct: 459 VVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGK 518

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + A EL+ EM  +GI PD  +Y +LI G
Sbjct: 519 FEEARELMGEMKRRGIKPDHISYNTLISG 547



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 147/296 (49%), Gaps = 10/296 (3%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+   ++EA      MKE G  P   T N ++        +E A+ F  +M +  I    
Sbjct: 167 CQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNV 226

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            T+N++I+ L  E K+ +A   L  M   GI P  +TYN L+ GY   G  + A  +  E
Sbjct: 227 YTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISE 286

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M  KG QP + TY  ++  +  + R   A ++       G++PD V +N LI G   NG+
Sbjct: 287 MKSKGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGD 343

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E AF+   EM +  + P   TYNTL+HG   + K+E A  L+ +++ +GI  D +    
Sbjct: 344 LETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSV---- 399

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              TYN +I G C++ +   A  L  EM++ GI P   TY SLI  +   +K  E+
Sbjct: 400 ---TYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREA 452



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 116/200 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++P  +TY S +  +C+  +  EA  + E++   G+ P  V  NTL+DG+C  GN
Sbjct: 424 MMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGN 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AFS   EM +  I P   TYN L+  L  E K  EA +++ EM  +GI PD I+YN 
Sbjct: 484 MDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNT 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY + G+ K AF + DEM+  G  PT+LTY +L+  LSK      A++L     ++G
Sbjct: 544 LISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEG 603

Query: 181 MLPDIVMFNALIDGHCTNGN 200
           ++P+   F ++I+    + N
Sbjct: 604 IVPNDSSFCSVIEAMSKSDN 623



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 10/263 (3%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           + + ++ ++  YC    ++ A      M ++G  P   T N ++  L    ++  A    
Sbjct: 155 STILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFY 214

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            +M    I  +  T+NI+IN  C+ G  KKA      M   GI+PT++TY +L+   S +
Sbjct: 215 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLR 274

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            R+  A  +     +KG  PD+  +N ++   C  G   RA  +L+EM  + + PD V+Y
Sbjct: 275 GRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEG---RASEVLREMKGIGLVPDSVSY 331

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N L+ G    G +E A    D+M ++G+        PT  TYN LI GL    + + AE 
Sbjct: 332 NILIRGCSNNGDLETAFAYRDEMVKQGMV-------PTFYTYNTLIHGLFMENKIEAAEI 384

Query: 284 LLREMVSKGITPDDNTYFSLIEG 306
           L+RE+  KGI  D  TY  +I G
Sbjct: 385 LIREIREKGIVLDSVTYNIVING 407



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 10/195 (5%)

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           +I ++ ++  YC+     +A      M  KG  P   T   ++ +LS+ NR+  A   + 
Sbjct: 156 TILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYA 215

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           +     +  ++  FN +I+  C  G +++A   L  M+   + P  VTYNTL+ G   +G
Sbjct: 216 DMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRG 275

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           ++E AR ++ +MK +G +PD  ++NP       ++  +C   EG  A E+LREM   G+ 
Sbjct: 276 RIEGARMIISEMKSKGFQPDLQTYNP-------ILSWMC--NEGR-ASEVLREMKGIGLV 325

Query: 295 PDDNTYFSLIEGIAS 309
           PD  +Y  LI G ++
Sbjct: 326 PDSVSYNILIRGCSN 340


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 166/344 (48%), Positives = 241/344 (70%), Gaps = 30/344 (8%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNK 58
           M+ RG + P+ YTYG+ +SG CK GR++EA ++ ++M   G V P AV YN LI GYC++
Sbjct: 98  MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 157

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L+ A  +RD MV++G+  T +TYNLL+H L M+ +  EA ++++EMG KG+ PD  TY
Sbjct: 158 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 217

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILING+C+ GN KKA  + + M  +G++ T++TYTSLI+ LSK+ ++ E D+LF+  + 
Sbjct: 218 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVR 277

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ PD+V++NALI+ H T+GNI+RAF ++ EM++ ++ PD+VTYNTLM G C  G+V+E
Sbjct: 278 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 337

Query: 239 ARRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQ 270
           AR+L+D+M +RGI+PD ++                            FNPT LTYNALIQ
Sbjct: 338 ARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 397

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
           GLCKN +GD AE +++EMV  GITPDD+TY SLIEG+ + D+ A
Sbjct: 398 GLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERA 441



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 151/285 (52%), Gaps = 7/285 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV     TY   V  +  +GR  EA  ++E+M   GL P   TYN LI+G+C +GN
Sbjct: 170 MVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGN 229

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M ++G+  T  TY  LI+ L  + ++ E D +  E   +GI PD + YN 
Sbjct: 230 VKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 289

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +   GN  +AF +  EM  K I P  +TY +L+  L    R+ EA +L +    +G
Sbjct: 290 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N LI G+   G+++ A  +  EM     +P  +TYN L+ G C+ G+ ++A 
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
            ++ +M   GI PD         TY +LI+GL    E  + +E L
Sbjct: 410 NMVKEMVENGITPDDS-------TYISLIEGLTTEDERAIDDERL 447



 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 153/325 (47%), Gaps = 69/325 (21%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
           T+N ++   C+ G    A     E+++Q   P A TYN +I       ++  A D+++EM
Sbjct: 43  TFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREM 98

Query: 107 GEKG-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQP---------------- 148
            E+G I P+  TY  +I+G+C+ G   +A  + DEM+ KG ++P                
Sbjct: 99  RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 158

Query: 149 -------------------TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                              T+ TY  L+  L    R  EA +L E    KG+ PD+  +N
Sbjct: 159 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 218

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI+GHC  GN+++A  + + M R  V    VTY +L++   ++G+V+E  +L D+  RR
Sbjct: 219 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRR 278

Query: 250 GIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLA 281
           GI+PD + +N                            P  +TYN L++GLC     D A
Sbjct: 279 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 338

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
            +L+ EM  +GI PD  TY +LI G
Sbjct: 339 RKLIDEMTKRGIQPDLVTYNTLISG 363



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 127/300 (42%), Gaps = 78/300 (26%)

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL------------------------- 121
           +H LL       A  +  +M    +   + T+NI+                         
Sbjct: 13  LHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNA 72

Query: 122 ------INGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
                 I G+C  G  + A  +  EM  + GI P   TY ++I    K  R+ EA ++F+
Sbjct: 73  VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFD 132

Query: 175 NFLAKGML-PDIVMFNALIDGHCTNGN-----------IER------------------- 203
             L KG + P+ VM+NALI G+C  G            +ER                   
Sbjct: 133 EMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMD 192

Query: 204 -----AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
                A+ L++EM    + PD  TYN L++G C++G V++A  + + M RRG++      
Sbjct: 193 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR------ 246

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
             T +TY +LI  L K  +    ++L  E V +GI PD   Y +LI   ++   +D+A E
Sbjct: 247 -ATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 305



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           AF+L  +M R+++     T+N ++   C  GK   A  LL QM R           P  +
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR-----------PNAV 73

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
           TYN +I G C       A +++REM  + GI P+  TY ++I G   V +  E+
Sbjct: 74  TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 127


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/344 (47%), Positives = 240/344 (69%), Gaps = 30/344 (8%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNK 58
           M+ RG + P+ YTYG+ +SG CK GR++EA ++ ++M   G V P AV YN LI GYC++
Sbjct: 171 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 230

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L+ A  +RD MV++G+  T +TYNLL+H L M+ +  EA ++++EMG KG+ PD  TY
Sbjct: 231 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 290

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILING+C+ GN KKA  + + M  +G++ T++TYT+LI+ LSK+ ++ E D+LF+  + 
Sbjct: 291 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR 350

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ PD+V++NALI+ H T+GNI+RAF ++ EM++ ++ PD+VTYNTLM G C  G+V+E
Sbjct: 351 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 410

Query: 239 ARRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQ 270
           AR+L+D+M  RGI+PD ++                            FNPT LTYNALIQ
Sbjct: 411 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 470

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
           GLCKN +GD AE +++EMV  GITPDD+TY SLIEG+ + D+ A
Sbjct: 471 GLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERA 514



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 151/285 (52%), Gaps = 7/285 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV     TY   V  +  +GR  EA  ++E+M   GL P   TYN LI+G+C +GN
Sbjct: 243 MVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGN 302

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M ++G+  T  TY  LI+ L  + ++ E D +  E   +GI PD + YN 
Sbjct: 303 VKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 362

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +   GN  +AF +  EM  K I P  +TY +L+  L    R+ EA +L +    +G
Sbjct: 363 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 422

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N LI G+   G+++ A  +  EM     +P  +TYN L+ G C+ G+ ++A 
Sbjct: 423 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 482

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
            ++ +M   GI PD         TY +LI+GL    E  + +E L
Sbjct: 483 NMVKEMVENGITPDDS-------TYISLIEGLTTEDERAIDDERL 520



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 152/325 (46%), Gaps = 69/325 (21%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
           T+N ++   C+ G    A     E+++Q   P A TYN +I       ++  A D+++EM
Sbjct: 116 TFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREM 171

Query: 107 GEKG-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQP---------------- 148
            E+G I P+  TY  +I+G+C+ G   +A  + DEM+ KG ++P                
Sbjct: 172 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 231

Query: 149 -------------------TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                              T+ TY  L+  L    R  EA +L E    KG+ PD+  +N
Sbjct: 232 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 291

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI+GHC  GN+++A  + + M R  V    VTY  L++   ++G+V+E  +L D+  RR
Sbjct: 292 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRR 351

Query: 250 GIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLA 281
           GI+PD + +N                            P  +TYN L++GLC     D A
Sbjct: 352 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 411

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
            +L+ EM  +GI PD  TY +LI G
Sbjct: 412 RKLIDEMTERGIQPDLVTYNTLISG 436



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 127/300 (42%), Gaps = 78/300 (26%)

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL------------------------- 121
           +H LL       A  +  +M    +   + T+NI+                         
Sbjct: 86  LHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNA 145

Query: 122 ------INGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
                 I G+C  G  + A  +  EM  + GI P   TY ++I    K  R+ EA ++F+
Sbjct: 146 VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFD 205

Query: 175 NFLAKGML-PDIVMFNALIDGHCTNGN-----------IER------------------- 203
             L KG + P+ VM+NALI G+C  G            +ER                   
Sbjct: 206 EMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMD 265

Query: 204 -----AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
                A+ L++EM    + PD  TYN L++G C++G V++A  + + M RRG++      
Sbjct: 266 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR------ 319

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
             T +TY ALI  L K  +    ++L  E V +GI PD   Y +LI   ++   +D+A E
Sbjct: 320 -ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 378



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           AF+L  +M R+++     T+N ++   C  GK   A  LL QM R           P  +
Sbjct: 98  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR-----------PNAV 146

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
           TYN +I G C       A +++REM  + GI P+  TY ++I G   V +  E+
Sbjct: 147 TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 200


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 165/344 (47%), Positives = 240/344 (69%), Gaps = 30/344 (8%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNK 58
           M+ RG + P+ YTYG+ +SG CK GR++EA ++ ++M   G V P AV YN LI GYC++
Sbjct: 545 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 604

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L+ A  +RD MV++G+  T +TYNLL+H L M+ +  EA ++++EMG KG+ PD  TY
Sbjct: 605 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 664

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILING+C+ GN KKA  + + M  +G++ T++TYT+LI+ LSK+ ++ E D+LF+  + 
Sbjct: 665 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR 724

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ PD+V++NALI+ H T+GNI+RAF ++ EM++ ++ PD+VTYNTLM G C  G+V+E
Sbjct: 725 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 784

Query: 239 ARRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQ 270
           AR+L+D+M  RGI+PD ++                            FNPT LTYNALIQ
Sbjct: 785 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 844

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
           GLCKN +GD AE +++EMV  GITPDD+TY SLIEG+ + D+ A
Sbjct: 845 GLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERA 888



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 151/285 (52%), Gaps = 7/285 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV     TY   V  +  +GR  EA  ++E+M   GL P   TYN LI+G+C +GN
Sbjct: 617 MVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGN 676

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M ++G+  T  TY  LI+ L  + ++ E D +  E   +GI PD + YN 
Sbjct: 677 VKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 736

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +   GN  +AF +  EM  K I P  +TY +L+  L    R+ EA +L +    +G
Sbjct: 737 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 796

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N LI G+   G+++ A  +  EM     +P  +TYN L+ G C+ G+ ++A 
Sbjct: 797 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 856

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
            ++ +M   GI PD         TY +LI+GL    E  + +E L
Sbjct: 857 NMVKEMVENGITPDDS-------TYISLIEGLTTEDERAIDDERL 894



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 69/326 (21%)

Query: 46  VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE 105
            T+N ++   C+ G    A     E+++Q   P A TYN +I       ++  A D+++E
Sbjct: 489 TTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMRE 544

Query: 106 MGEKG-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQP--------------- 148
           M E+G I P+  TY  +I+G+C+ G   +A  + DEM+ KG ++P               
Sbjct: 545 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 604

Query: 149 --------------------TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
                               T+ TY  L+  L    R  EA +L E    KG+ PD+  +
Sbjct: 605 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 664

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LI+GHC  GN+++A  + + M R  V    VTY  L++   ++G+V+E  +L D+  R
Sbjct: 665 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR 724

Query: 249 RGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDL 280
           RGI+PD + +N                            P  +TYN L++GLC     D 
Sbjct: 725 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 784

Query: 281 AEELLREMVSKGITPDDNTYFSLIEG 306
           A +L+ EM  +GI PD  TY +LI G
Sbjct: 785 ARKLIDEMTERGIQPDLVTYNTLISG 810



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 127/300 (42%), Gaps = 78/300 (26%)

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL------------------------- 121
           +H LL       A  +  +M    +   + T+NI+                         
Sbjct: 460 LHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNA 519

Query: 122 ------INGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
                 I G+C  G  + A  +  EM  + GI P   TY ++I    K  R+ EA ++F+
Sbjct: 520 VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFD 579

Query: 175 NFLAKGML-PDIVMFNALIDGHCTNGN-----------IER------------------- 203
             L KG + P+ VM+NALI G+C  G            +ER                   
Sbjct: 580 EMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMD 639

Query: 204 -----AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
                A+ L++EM    + PD  TYN L++G C++G V++A  + + M RRG++      
Sbjct: 640 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR------ 693

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
             T +TY ALI  L K  +    ++L  E V +GI PD   Y +LI   ++   +D+A E
Sbjct: 694 -ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 752



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           AF+L  +M R+++     T+N ++   C  GK   A  LL QM R           P  +
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR-----------PNAV 520

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
           TYN +I G C       A +++REM  + GI P+  TY ++I G   V +  E+
Sbjct: 521 TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 574


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 165/344 (47%), Positives = 240/344 (69%), Gaps = 30/344 (8%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNK 58
           M+ RG + P+ YTYG+ +SG CK GR++EA ++ ++M   G V P AV YN LI GYC++
Sbjct: 540 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 599

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L+ A  +RD MV++G+  T +TYNLL+H L M+ +  EA ++++EMG KG+ PD  TY
Sbjct: 600 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 659

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILING+C+ GN KKA  + + M  +G++ T++TYT+LI+ LSK+ ++ E D+LF+  + 
Sbjct: 660 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR 719

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ PD+V++NALI+ H T+GNI+RAF ++ EM++ ++ PD+VTYNTLM G C  G+V+E
Sbjct: 720 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 779

Query: 239 ARRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQ 270
           AR+L+D+M  RGI+PD ++                            FNPT LTYNALIQ
Sbjct: 780 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 839

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
           GLCKN +GD AE +++EMV  GITPDD+TY SLIEG+ + D+ A
Sbjct: 840 GLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERA 883



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 151/285 (52%), Gaps = 7/285 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV     TY   V  +  +GR  EA  ++E+M   GL P   TYN LI+G+C +GN
Sbjct: 612 MVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGN 671

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M ++G+  T  TY  LI+ L  + ++ E D +  E   +GI PD + YN 
Sbjct: 672 VKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 731

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +   GN  +AF +  EM  K I P  +TY +L+  L    R+ EA +L +    +G
Sbjct: 732 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 791

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N LI G+   G+++ A  +  EM     +P  +TYN L+ G C+ G+ ++A 
Sbjct: 792 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 851

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
            ++ +M   GI PD         TY +LI+GL    E  + +E L
Sbjct: 852 NMVKEMVENGITPDDS-------TYISLIEGLTTEDERAIDDERL 889



 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 69/326 (21%)

Query: 46  VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE 105
            T+N ++   C+ G    A     E+++Q   P A TYN +I       ++  A D+++E
Sbjct: 484 TTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMRE 539

Query: 106 MGEKG-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQP--------------- 148
           M E+G I P+  TY  +I+G+C+ G   +A  + DEM+ KG ++P               
Sbjct: 540 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 599

Query: 149 --------------------TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
                               T+ TY  L+  L    R  EA +L E    KG+ PD+  +
Sbjct: 600 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 659

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LI+GHC  GN+++A  + + M R  V    VTY  L++   ++G+V+E  +L D+  R
Sbjct: 660 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR 719

Query: 249 RGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDL 280
           RGI+PD + +N                            P  +TYN L++GLC     D 
Sbjct: 720 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 779

Query: 281 AEELLREMVSKGITPDDNTYFSLIEG 306
           A +L+ EM  +GI PD  TY +LI G
Sbjct: 780 ARKLIDEMTERGIQPDLVTYNTLISG 805



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 127/300 (42%), Gaps = 78/300 (26%)

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL------------------------- 121
           +H LL       A  +  +M    +   + T+NI+                         
Sbjct: 455 LHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNA 514

Query: 122 ------INGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
                 I G+C  G  + A  +  EM  + GI P   TY ++I    K  R+ EA ++F+
Sbjct: 515 VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFD 574

Query: 175 NFLAKGML-PDIVMFNALIDGHCTNGN-----------IER------------------- 203
             L KG + P+ VM+NALI G+C  G            +ER                   
Sbjct: 575 EMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMD 634

Query: 204 -----AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
                A+ L++EM    + PD  TYN L++G C++G V++A  + + M RRG++      
Sbjct: 635 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR------ 688

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
             T +TY ALI  L K  +    ++L  E V +GI PD   Y +LI   ++   +D+A E
Sbjct: 689 -ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 747



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           AF+L  +M R+++     T+N ++   C  GK   A  LL QM R           P  +
Sbjct: 467 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR-----------PNAV 515

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
           TYN +I G C       A +++REM  + GI P+  TY ++I G   V +  E+
Sbjct: 516 TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 569


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 165/344 (47%), Positives = 240/344 (69%), Gaps = 30/344 (8%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNK 58
           M+ RG + P+ YTYG+ +SG CK GR++EA ++ ++M   G V P AV YN LI GYC++
Sbjct: 211 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 270

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L+ A  +RD MV++G+  T +TYNLL+H L M+ +  EA ++++EMG KG+  D  TY
Sbjct: 271 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTY 330

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILING+C+ GN KKA  + + M  +G++ T++TYTSLI+ LSK+ ++ E D+LF+  + 
Sbjct: 331 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVR 390

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ PD+V++NALI+ H T+GNI+RAF ++ EM++ ++ PD+VTYNTLM G C  G+V+E
Sbjct: 391 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDE 450

Query: 239 ARRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQ 270
           AR+L+D+M +RGI+PD ++                            FNPT LTYNALIQ
Sbjct: 451 ARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 510

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
           GLCKN +GD AE +++EMV  GITPDD+TY SLIEG+ + D+ A
Sbjct: 511 GLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERA 554



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 150/285 (52%), Gaps = 7/285 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV     TY   V  +  +GR  EA  ++E+M   GL     TYN LI+G+C +GN
Sbjct: 283 MVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGN 342

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M ++G+  T  TY  LI+ L  + ++ E D +  E   +GI PD + YN 
Sbjct: 343 VKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 402

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +   GN  +AF +  EM  K I P  +TY +L+  L    R+ EA +L +    +G
Sbjct: 403 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 462

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N LI G+   G+++ A  +  EM     +P  +TYN L+ G C+ G+ ++A 
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 522

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
            ++ +M   GI PD         TY +LI+GL    E  + +E L
Sbjct: 523 NMVKEMVENGITPDDS-------TYISLIEGLTTEDERAIDDERL 560



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 152/325 (46%), Gaps = 69/325 (21%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
           T+N ++   C+ G    A     E+++Q   P A TYN +I       ++  A D+++EM
Sbjct: 156 TFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREM 211

Query: 107 GEKG-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQP---------------- 148
            E+G I P+  TY  +I+G+C+ G   +A  + DEM+ KG ++P                
Sbjct: 212 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 271

Query: 149 -------------------TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                              T+ TY  L+  L    R  EA +L E    KG+  D+  +N
Sbjct: 272 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYN 331

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI+GHC  GN+++A  + + M R  V    VTY +L++   ++G+V+E  +L D+  RR
Sbjct: 332 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRR 391

Query: 250 GIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLA 281
           GI+PD + +N                            P  +TYN L++GLC     D A
Sbjct: 392 GIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 451

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
            +L+ EM  +GI PD  TY +LI G
Sbjct: 452 RKLIDEMTKRGIQPDLVTYNTLISG 476



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 126/300 (42%), Gaps = 78/300 (26%)

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL------------------------- 121
           +H LL       A  +  +M    +   + T+NI+                         
Sbjct: 126 LHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNA 185

Query: 122 ------INGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
                 I G+C  G  + A  +  EM  + GI P   TY ++I    K  R+ EA ++F+
Sbjct: 186 VTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFD 245

Query: 175 NFLAKGML-PDIVMFNALIDGHCTNGN-----------IER------------------- 203
             L KG + P+ VM+NALI G+C  G            +ER                   
Sbjct: 246 EMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMD 305

Query: 204 -----AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
                A+ L++EM    +  D  TYN L++G C++G V++A  + + M RRG++      
Sbjct: 306 GRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVR------ 359

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
             T +TY +LI  L K  +    ++L  E V +GI PD   Y +LI   ++   +D+A E
Sbjct: 360 -ATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 418



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 12/114 (10%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           AF+L  +M R+++     T+N ++   C  GK   A  LL QM R           P  +
Sbjct: 138 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR-----------PNAV 186

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
           TYN +I G C       A +++REM  + GI P+  TY ++I G   V +  E+
Sbjct: 187 TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEA 240


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 164/342 (47%), Positives = 238/342 (69%), Gaps = 30/342 (8%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNK 58
           M+ RG + PD YTY + +SG CK GR+E+A ++ ++M   G + P+AV YN LI GYC+ 
Sbjct: 173 MRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDV 232

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L++A  +R++MV++GI  T +TYNLL+H L M+ +  +A  +L+EM + G  PD  TY
Sbjct: 233 GKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTY 292

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILINGYC+ GN KKA  + +EM  KG++ T +TYTSLI+V S++ ++ E D+LF   + 
Sbjct: 293 NILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVK 352

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG+ PD+VM+NALI+ HCT G++ERA+ ++ EM++ ++ PD++TYNTLM G C  G+++E
Sbjct: 353 KGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDE 412

Query: 239 ARRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQ 270
           AR L+D+M +RGI+PD +S                            FNPT +TYNALIQ
Sbjct: 413 ARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQ 472

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           GLCK ++GD AE L++EMV+KGITPDD+TY SLIEG+ + D+
Sbjct: 473 GLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 48/307 (15%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
           T+N ++   C  G    A     E+++Q   P A TYN +I       ++  A ++++EM
Sbjct: 118 TFNIMLRHLCATGKPVRAL----ELLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREM 173

Query: 107 GEK-GIVPDSITYNILINGYCRCGNAKKAFSLHDE------------------------- 140
            E+ GI PD  TY  LI+G+C+ G  + A  + DE                         
Sbjct: 174 RERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVG 233

Query: 141 -----------MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                      M+ +GI  T+ TY  L+  L    R  +A  + E     G  PD+  +N
Sbjct: 234 KLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYN 293

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI+G+C  GN ++A  + +EM +  V    VTY +L++   R+G+V+E  RL +   ++
Sbjct: 294 ILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKK 353

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           GI+PD +        YNALI   C   + + A E++ EM  K I PDD TY +L+ G   
Sbjct: 354 GIRPDVV-------MYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCL 406

Query: 310 VDKAAES 316
           + +  E+
Sbjct: 407 LGRLDEA 413



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 13/243 (5%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF+   ++ +  +    +T+N+++  L    K V A ++L++M      P+++TYN +I 
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIA 155

Query: 124 GYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-M 181
           G+C  G  + A  +  EM  + GI P   TY +LI    K  RM +A ++F+  L KG +
Sbjct: 156 GFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEV 215

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P  VM+NALI G+C  G ++ A    ++M +  +     TYN LMH      +  +A  
Sbjct: 216 APSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYA 275

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +L++M++ G       F+P   TYN LI G CK      A E+  EM  KG+     TY 
Sbjct: 276 VLEEMQKNG-------FSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYT 328

Query: 302 SLI 304
           SLI
Sbjct: 329 SLI 331



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 12/110 (10%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           AF+L  ++ R+++     T+N ++   C  GK   A  LL QM R           P  +
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR-----------PNAV 148

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDK 312
           TYN +I G C       A E++REM  + GI PD  TY +LI G   + +
Sbjct: 149 TYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGR 198


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 163/342 (47%), Positives = 235/342 (68%), Gaps = 30/342 (8%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNK 58
           M+ RG + PD YTY + +SG CK G++E+A+++ ++M   G V P AV YN LI GYC++
Sbjct: 173 MRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQ 232

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           GNLE+A  +R EMV +G+  T +TYNL +H L ME +  EA  +++EMGEKG+ PD+ TY
Sbjct: 233 GNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTY 292

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILINGYC+ G  KKA  + + M+ KGI+ T++TYTSLI  LS +  + E D+LF + + 
Sbjct: 293 NILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVR 352

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ PD+ M+NALI+ HCT G+++RAF ++ EM++ ++ PD+VTYNTLM G C  G+++E
Sbjct: 353 RGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDE 412

Query: 239 ARRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQ 270
           AR L+++M +RGI+PD +S                            FNPT LTYNA+I+
Sbjct: 413 ARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIK 472

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           GLC N +G  AE+L++EMV  GITPDD+TY SLIEG+ + D+
Sbjct: 473 GLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDE 514



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 156/307 (50%), Gaps = 13/307 (4%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           T+   +  +C  G+   A  +L QM      P AVTYNT+I G+C +G ++       EM
Sbjct: 118 TFNIMLRHLCTAGKPVRALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIMREM 173

Query: 72  VKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-PDSITYNILINGYCRCG 129
            ++G I P   TY  +I       K+ +A  +  EM  +G V P+++ YN LI GYC  G
Sbjct: 174 RERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQG 233

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           N + A     EM+ +G+  T+ TY   +  L  + R  EA  L E    KG+ PD   +N
Sbjct: 234 NLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYN 293

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI+G+C  G  ++A  + + M    +    VTY +L+H    +G V+E  RL +   RR
Sbjct: 294 ILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRR 353

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           GI+PD          YNALI   C   + D A E++ EM  K ITPDD TY +L+ G+  
Sbjct: 354 GIRPD-------LFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCL 406

Query: 310 VDKAAES 316
           + +  E+
Sbjct: 407 LGRLDEA 413



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 89/166 (53%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG++PD + Y + ++  C  G ++ A  ++ +M++  + P  VTYNTL+ G C  G L+ 
Sbjct: 353 RGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDE 412

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EM K+GI P   +YN LI    M+  + +A  +  EM  KG  P  +TYN +I 
Sbjct: 413 ARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIK 472

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G C  G    A  L  EM+  GI P   TY SLI  L+ ++  + A
Sbjct: 473 GLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDERLAA 518



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 115/265 (43%), Gaps = 45/265 (16%)

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL--------------- 121
           +PTAS     +H LL       A  +  ++    +   + T+NI+               
Sbjct: 83  IPTAS-----LHPLLSSLPPAPAFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALE 137

Query: 122 ----------------INGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQN 164
                           I G+C  G  +    +  EM  + GI P   TY ++I    K  
Sbjct: 138 LLRQMPSPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVG 197

Query: 165 RMIEADQLFENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
           ++ +A ++F+  L +G + P+ VM+NALI G+C  GN+E A     EM    V     TY
Sbjct: 198 KVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATY 257

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N  +H    +G+  EA  L+++M  +G+ PD         TYN LI G CK  +   A +
Sbjct: 258 NLFVHTLFMEGRAAEAHALVEEMGEKGLAPDA-------FTYNILINGYCKEGKEKKAMK 310

Query: 284 LLREMVSKGITPDDNTYFSLIEGIA 308
           +   MV KGI     TY SLI  ++
Sbjct: 311 MFEVMVGKGIRATVVTYTSLIHALS 335



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 56/104 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+QPD  +Y + +SG   +G +++A ++ ++M   G  PT +TYN +I G C  G 
Sbjct: 420 MTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQ 479

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
              A     EMV  GI P  STY  LI  L  E + + A D +K
Sbjct: 480 GGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDERLAAGDDVK 523


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 152/321 (47%), Positives = 229/321 (71%), Gaps = 17/321 (5%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNK 58
           M+ RG + PD YTY + +SG CK GR+E+A+++ ++M   G + P+AV YN LI GYC++
Sbjct: 173 MRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDR 232

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L++A  +R++MV++G+  T +TYNLL+H L M+ +  +A  +L+EM   G+ PD  TY
Sbjct: 233 GKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTY 292

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILINGYC+ GN KKA  + +EM  KG++ T +TYTSLI+  S++ ++ E D+LF+  + 
Sbjct: 293 NILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVK 352

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG+ PD+VM+NALI+ HC  G++ERAF ++ EM++ ++ PD+VTYNTL+ G C  G+++E
Sbjct: 353 KGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDE 412

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR L+D+M +RGI+PD                GLCKN +GD AE L++EMV KGITPDD+
Sbjct: 413 ARGLIDEMTKRGIQPD---------------LGLCKNGQGDDAENLMKEMVGKGITPDDS 457

Query: 299 TYFSLIEGIASVDKAAESSNS 319
           TY SLIEG+ +VD+   ++++
Sbjct: 458 TYISLIEGLTTVDEQMSAADA 478



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 13/243 (5%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF+   ++ +  +    +T+N+++  L    K V A ++L++M      P+++TYN +I 
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIA 155

Query: 124 GYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-M 181
           G+C  G  + A  +  EM  + GI P   TY +LI    K  RM +A ++F+  L +G +
Sbjct: 156 GFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEV 215

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P  VM+NALI G+C  G ++ A    ++M +  V     TYN L+H     G+  +A  
Sbjct: 216 APSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYA 275

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +L++M+R G+ PD         TYN LI G CK      A E+  EM  KG+     TY 
Sbjct: 276 VLEEMQRNGLSPD-------VFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYT 328

Query: 302 SLI 304
           SLI
Sbjct: 329 SLI 331



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 11/120 (9%)

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FN ++   C  G   RA  LL++M R    P+ VTYNT++ G C +G+V+ A  ++ +M+
Sbjct: 119 FNIMLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVMREMR 174

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-ITPDDNTYFSLIEG 306
            RG         P + TY  LI G CK    + A ++  EM+++G + P    Y +LI G
Sbjct: 175 ERG------GIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGG 228



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           AF+L  ++ R+++     T+N ++   C  GK   A  LL QM R           P  +
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR-----------PNAV 148

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAESSN 318
           TYN +I G C       A E++REM  + GI PD  TY +LI G   + +  +++ 
Sbjct: 149 TYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAK 204



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 27/128 (21%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++PD   Y + ++  C  G +E A  ++ +M++  + P  VTYNTLI G+C  G L+ 
Sbjct: 353 KGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDE 412

Query: 64  AFSFRDEMVK---------------------------QGIMPTASTYNLLIHELLMERKM 96
           A    DEM K                           +GI P  STY  LI  L    + 
Sbjct: 413 ARGLIDEMTKRGIQPDLGLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGLTTVDEQ 472

Query: 97  VEADDMLK 104
           + A D  K
Sbjct: 473 MSAADAAK 480


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 121/334 (36%), Positives = 193/334 (57%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+ YTY S +  +CK G++++A R+L +M   G+VP  V Y TLIDG+C  GN
Sbjct: 36  MQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGN 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+   DEM KQ I+P    Y  +I  L    KM+EAD +  +M  +G+ PD +TY  
Sbjct: 96  IQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTT 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  +KAFSLH++M+  G+ P ++TYT+L   L K  ++  A++L      KG
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKG 215

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I  +N+L++G C +GNI +A  L++EM+   ++PD +T+ TLM   C+ G++ +A 
Sbjct: 216 LQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAH 275

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL +M  RG++P  I+FN                            P   TYN+L++  
Sbjct: 276 ELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQY 335

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C         E+ + M ++G+ PD NTY  LI+G
Sbjct: 336 CIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKG 369



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/271 (37%), Positives = 162/271 (59%), Gaps = 7/271 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           MK  G  P  V+Y+T+I+GYC  G L+       EM  +G+ P   TYN +I  L    K
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           + +A+ +L+EM  +GIVPD++ Y  LI+G+C+ GN + A+ L DEM  + I P  + YT+
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           +I  L +  +M+EAD++F    ++G+ PD V +  LIDG+C +G +E+AFSL  +M +  
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           + P+ VTY  L  G C+ G+V+ A  LL +M  +G++ +         TYN+L+ GLCK+
Sbjct: 181 LTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNIC-------TYNSLVNGLCKS 233

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                A +L+ EM   G+ PD  T+ +L++ 
Sbjct: 234 GNIRQAVKLMEEMEVAGMYPDTITFTTLMDA 264



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 7/302 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + + PD   Y + + G+C+ G++ EA ++  +M   G+ P  VTY TLIDGYC  G 
Sbjct: 106 MEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGE 165

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AFS  ++MV+ G+ P   TY  L   L    ++  A+++L EM  KG+  +  TYN 
Sbjct: 166 MEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNS 225

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ GN ++A  L +EM   G+ P  +T+T+L+    K   M++A +L    L +G
Sbjct: 226 LVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRG 285

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ FN L++G C +G +E    LL  M    + P+  TYN+LM   C +  +    
Sbjct: 286 LQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTT 345

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  RG+ PD         TYN LI+G CK +    A  L +EM  KG     ++Y
Sbjct: 346 EIYKGMCARGVMPDSN-------TYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSY 398

Query: 301 FS 302
            S
Sbjct: 399 NS 400



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 151/294 (51%), Gaps = 35/294 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRGV+PD  TY + + G CK G +E+A  +  QM ++GL P  VTY  L DG C  G 
Sbjct: 141 MFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQ 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL-----------LMER--------------- 94
           ++ A     EM  +G+     TYN L++ L           LME                
Sbjct: 201 VDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTT 260

Query: 95  ---------KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                    +MV+A ++L+EM ++G+ P  IT+N+L+NG+C  G  +    L   M+ KG
Sbjct: 261 LMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKG 320

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P   TY SL+     +N M    ++++   A+G++PD   +N LI GHC   N++ A+
Sbjct: 321 IMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAW 380

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            L KEM     +    +YN+++ G  ++ K+ EAR L ++M+R G+  D   +N
Sbjct: 381 FLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYN 434



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 120/210 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD+ T+ + +   CK G + +A  +L +M + GL PT +T+N L++G+C  G 
Sbjct: 246 MEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGM 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE        M+++GIMP  +TYN L+ +  +   M    ++ K M  +G++PDS TYNI
Sbjct: 306 LEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNI 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A+ LH EM  KG   T  +Y S+I    K+ ++ EA +LFE    +G
Sbjct: 366 LIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           M  D  ++N  +D     GN+E A  L  E
Sbjct: 426 MAADAEIYNLFVDISYGEGNMETALELCDE 455



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 7/138 (5%)

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G  PD+V ++ +I+G+C  G +++   L++EM    + P+  TYN+++   C+ GKV++
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A R+L +M  +GI PD +        Y  LI G CK      A +L  EM  + I PD  
Sbjct: 64  AERVLREMINQGIVPDTV-------VYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFI 116

Query: 299 TYFSLIEGIASVDKAAES 316
            Y ++I G+    K  E+
Sbjct: 117 AYTAVICGLCRCGKMMEA 134



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++ TY S +   C    +   + + + M   G++P + TYN LI G+C   N
Sbjct: 316 MLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARN 375

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EM ++G   TAS+YN +I     ++K+ EA ++ +EM  +G+  D+  YN+
Sbjct: 376 MKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNL 435

Query: 121 LINGYCRCGNAKKAFSLHDEMIH 143
            ++     GN + A  L DE I 
Sbjct: 436 FVDISYGEGNMETALELCDEAIE 458


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/318 (37%), Positives = 184/318 (57%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++SR V P+ YTY   + G C  G L++      +M+ NG +P  VTYNTLID YC  G 
Sbjct: 206 IRSR-VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 264

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF     M  +G+ P   +YN++I+ L  E  M EA ++L+EMG KG  PD +TYN 
Sbjct: 265 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ GN  +A  +H EM+  G+ P+++TYT+LI  + K   +  A + F+    +G
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 384

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +  LIDG    G +  A+ +L EM      P  VTYN  +HG C   ++EEA 
Sbjct: 385 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 444

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M  +G+ PD +S       Y+ +I G C+  E D A ++ +EMV KG++PD  TY
Sbjct: 445 GVVQEMVEKGLAPDVVS-------YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY 497

Query: 301 FSLIEGIASVDKAAESSN 318
            SLI+G+  + +  E+ +
Sbjct: 498 SSLIQGLCEMRRLTEACD 515



 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 174/318 (54%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+QP+  +Y   ++G+C+EG ++EA  +LE+M   G  P  VTYNTL++GYC +GN
Sbjct: 275 MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 334

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EMV+ G+ P+  TY  LI+ +   R +  A +   +M  +G+ P+  TY  
Sbjct: 335 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ R G   +A+ + +EM   G  P+++TY + I       RM EA  + +  + KG
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ +I G C  G ++RAF + +EM    V PD VTY++L+ G C   ++ EA 
Sbjct: 455 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 514

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            L  +M   G+ PD         TY  LI   C   EGDL  A  L  EM+ KG  PD  
Sbjct: 515 DLSQEMLDMGLPPD-------EFTYTTLINAYC--VEGDLNKALHLHDEMIHKGFLPDAV 565

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  LI G+    +  E+
Sbjct: 566 TYSVLINGLNKQARTREA 583



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 166/314 (52%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P   TY + ++ MCK   L  A    +QM+  GL P   TY TLIDG+  +G 
Sbjct: 345 MVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGL 404

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+   +EM + G  P+  TYN  IH   +  +M EA  +++EM EKG+ PD ++Y+ 
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR G   +AF +  EM+ KG+ P  +TY+SLI  L +  R+ EA  L +  L  G
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LI+ +C  G++ +A  L  EM      PD VTY+ L++G  +Q +  EA+
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 584

Query: 241 RLLDQMKRRGIKPDHISF-----NPTRLTYN---ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      P  +++     N + + +    ALI+G C       A+ +   MV + 
Sbjct: 585 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERN 644

Query: 293 ITPDDNTYFSLIEG 306
             P +  Y  +I G
Sbjct: 645 HKPGEAVYNVIIHG 658



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 161/307 (52%), Gaps = 27/307 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY +F+ G C   R+EEA  ++++M E GL P  V+Y+T+I G+C KG 
Sbjct: 415 MTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE 474

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF  + EMV++G+ P A TY+ LI  L   R++ EA D+ +EM + G+ PD  TY  
Sbjct: 475 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 534

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC  G+  KA  LHDEMIHKG  P  +TY+ LI  L+KQ R  EA +L    + + 
Sbjct: 535 LINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEE 594

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  V ++ LI+ +C+N   +   +L+K                   G C +G + EA 
Sbjct: 595 SVPSDVTYDTLIE-NCSNIEFKSVVALIK-------------------GFCMKGLMHEAD 634

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ + M  R  KP           YN +I G C+      A  L +EM+  G  P   T 
Sbjct: 635 RVFESMVERNHKPG-------EAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTV 687

Query: 301 FSLIEGI 307
            +LI+ +
Sbjct: 688 ITLIKAL 694



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 149/267 (55%), Gaps = 9/267 (3%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE--ADD 101
           ++  ++ ++  Y +   ++ A +  +     G MP   +YN ++  ++  R  V+  A++
Sbjct: 141 SSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEE 200

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           + +EM    + P+  TYNILI G+C  G  +K      EM   G  P ++TY +LI    
Sbjct: 201 VYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYC 260

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  R+ EA  L ++  +KGM P+++ +N +I+G C  G+++ A+ +L+EM      PDEV
Sbjct: 261 KMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEV 320

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TYNTL++G C++G   +A  +  +M R G+       +P+ +TY ALI  +CK +  + A
Sbjct: 321 TYNTLLNGYCKEGNFHQALVIHAEMVRNGV-------SPSVVTYTALINSMCKARNLNRA 373

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIA 308
            E   +M  +G+ P++ TY +LI+G +
Sbjct: 374 MEFFDQMRIRGLRPNERTYTTLIDGFS 400



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 126/269 (46%), Gaps = 50/269 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY S + G+C+  RL EA  + ++M + GL P   TY TLI+ YC +G+
Sbjct: 485 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGD 544

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           L  A    DEM+ +G +P A TY++LI+ L                              
Sbjct: 545 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDT 604

Query: 91  --------------------LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                M+  M EAD + + M E+   P    YN++I+G+CR GN
Sbjct: 605 LIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGN 664

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KAF+L+ EMIH G  P  +T  +LI  L K+    E  ++  + L    L +  +   
Sbjct: 665 LPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKV 724

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L++ +   GN+E   ++L +M +  + P+
Sbjct: 725 LVEINHKEGNMEAVLNVLTDMAKDGLLPN 753



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 35/136 (25%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + + G C +G + EA R+ E M E    P    YN +I G+C  GNL  AF+   EM+  
Sbjct: 619 ALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS 678

Query: 75  GIMPTASTYNLLIHELLME-------------------------RKMVEAD--------- 100
           G +P   T   LI  L  E                         + +VE +         
Sbjct: 679 GFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAV 738

Query: 101 -DMLKEMGEKGIVPDS 115
            ++L +M + G++P+S
Sbjct: 739 LNVLTDMAKDGLLPNS 754


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 186/305 (60%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +G++P+ YTY S +S +CK GR+ EA ++L  MK   + P  V Y TLI G+   GN
Sbjct: 313 LQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGN 372

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + + +   DEM ++ I+P   TY  +IH L    K+VEA  +  EM  KG+ PD +TY  
Sbjct: 373 VSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTA 432

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  K+AFSLH++M+ KG+ P ++TYT+L+  L K   +  A++L      KG
Sbjct: 433 LIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKG 492

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +NALI+G C  GNIE+A  L++EMD     PD +TY T+M   C+ G++ +A 
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAH 552

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M  +G++       PT +T+N L+ G C +   +  E L++ M+ KGI P+  T+
Sbjct: 553 ELLRIMLDKGLQ-------PTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTF 605

Query: 301 FSLIE 305
            SL++
Sbjct: 606 NSLMK 610



 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 181/312 (58%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  ++ +Y   +  +C+ G+++EA  +L QM+  G VP  V+Y+ ++DGYC    L   
Sbjct: 247 GVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKV 306

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +E+ ++G+ P   TYN +I  L    ++VEA+ +L+ M  + I PD++ Y  LI+G
Sbjct: 307 LKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISG 366

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + GN    + L DEM  K I P  +TYTS+I  L +  +++EA +LF   L+KG+ PD
Sbjct: 367 FGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPD 426

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V + ALIDG+C  G ++ AFSL  +M    + P+ VTY  L+ G C+ G+V+ A  LL 
Sbjct: 427 EVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLH 486

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  +G++P+         TYNALI GLCK    + A +L+ EM   G  PD  TY +++
Sbjct: 487 EMSEKGLQPN-------VCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIM 539

Query: 305 EGIASVDKAAES 316
           +    + + A++
Sbjct: 540 DAYCKMGEMAKA 551



 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + + PD  TY S + G+C+ G++ EA ++  +M   GL P  VTY  LIDGYC  G 
Sbjct: 383 MKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGE 442

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AFS  ++MV++G+ P   TY  L+  L    ++  A+++L EM EKG+ P+  TYN 
Sbjct: 443 MKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNA 502

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ GN ++A  L +EM   G  P  +TYT+++    K   M +A +L    L KG
Sbjct: 503 LINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKG 562

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV FN L++G C +G +E    L+K M    + P+  T+N+LM   C +  +    
Sbjct: 563 LQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATI 622

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  +G+ PD         TYN LI+G CK +    A  L +EMV KG +    +Y
Sbjct: 623 EIYKGMHAQGVVPD-------TNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASY 675

Query: 301 FSLIEGIASVDKAAES 316
            SLI+G     K  E+
Sbjct: 676 NSLIKGFYKRKKFEEA 691



 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 175/338 (51%), Gaps = 31/338 (9%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN- 60
           K  G  P    +  F   + + G L EA ++ +++   G++ +  + N  +    N  + 
Sbjct: 175 KDWGAHP--LVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDG 232

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF    E  + G+     +YN+++H L    K+ EA  +L +M  +G VPD ++Y++
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYC+     K   L +E+  KG++P   TY S+I  L K  R++EA+Q+      + 
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++  LI G   +GN+   + L  EM R K+ PD VTY +++HG C+ GKV EAR
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEAR 412

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
           +L  +M  +G+KPD +++                             P  +TY AL+ GL
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           CK  E D+A ELL EM  KG+ P+  TY +LI G+  V
Sbjct: 473 CKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKV 510



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 139/251 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  TY + V G+CK G ++ A+ +L +M E GL P   TYN LI+G C  GN
Sbjct: 453 MVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGN 512

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM   G  P   TY  ++       +M +A ++L+ M +KG+ P  +T+N+
Sbjct: 513 IEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNV 572

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L   M+ KGI P   T+ SL+     +N M    ++++   A+G
Sbjct: 573 LMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQG 632

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N LI GHC   N++ A+ L KEM          +YN+L+ G  ++ K EEAR
Sbjct: 633 VVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEAR 692

Query: 241 RLLDQMKRRGI 251
           +L ++M+  G 
Sbjct: 693 KLFEEMRTHGF 703



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 115/210 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+ TY + +   CK G + +A  +L  M + GL PT VT+N L++G+C  G 
Sbjct: 523 MDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGM 582

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE        M+ +GIMP A+T+N L+ +  +   M    ++ K M  +G+VPD+ TYNI
Sbjct: 583 LEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNI 642

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A+ LH EM+ KG   T  +Y SLI    K+ +  EA +LFE     G
Sbjct: 643 LIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            + +  +++  +D +   GN E    L  E
Sbjct: 703 FIAEKEIYDIFVDVNYEEGNWENTLELCDE 732



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 71/144 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++ T+ S +   C    +     + + M   G+VP   TYN LI G+C   N
Sbjct: 593 MLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARN 652

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EMV++G   TA++YN LI      +K  EA  + +EM   G + +   Y+I
Sbjct: 653 MKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDI 712

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK 144
            ++     GN +    L DE I K
Sbjct: 713 FVDVNYEEGNWENTLELCDEAIEK 736


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  240 bits (612), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/318 (37%), Positives = 184/318 (57%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++SR V P+ YTY   + G C  G L++      +M+ NG +P  VTYNTLID YC  G 
Sbjct: 2   IRSR-VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF     M  +G+ P   +YN++I+ L  E  M EA ++L+EMG KG  PD +TYN 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ GN  +A  +H EM+  G+ P+++TYT+LI  + K   +  A + F+    +G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +  LIDG    G +  A+ +L EM      P  VTYN  +HG C   ++EEA 
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M  +G+ PD +S       Y+ +I G C+  E D A ++ +EMV KG++PD  TY
Sbjct: 241 GVVQEMVEKGLAPDVVS-------YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY 293

Query: 301 FSLIEGIASVDKAAESSN 318
            SLI+G+  + +  E+ +
Sbjct: 294 SSLIQGLCEMRRLTEACD 311



 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 174/318 (54%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+QP+  +Y   ++G+C+EG ++EA  +LE+M   G  P  VTYNTL++GYC +GN
Sbjct: 71  MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EMV+ G+ P+  TY  LI+ +   R +  A +   +M  +G+ P+  TY  
Sbjct: 131 FHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 190

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ R G   +A+ + +EM   G  P+++TY + I       RM EA  + +  + KG
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ +I G C  G ++RAF + +EM    V PD VTY++L+ G C   ++ EA 
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 310

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            L  +M   G+ PD         TY  LI   C   EGDL  A  L  EM+ KG  PD  
Sbjct: 311 DLSQEMLDMGLPPDE-------FTYTTLINAYC--VEGDLNKALHLHDEMIHKGFLPDAV 361

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  LI G+    +  E+
Sbjct: 362 TYSVLINGLNKQARTREA 379



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 166/314 (52%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P   TY + ++ MCK   L  A    +QM+  GL P   TY TLIDG+  +G 
Sbjct: 141 MVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGL 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+   +EM + G  P+  TYN  IH   +  +M EA  +++EM EKG+ PD ++Y+ 
Sbjct: 201 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR G   +AF +  EM+ KG+ P  +TY+SLI  L +  R+ EA  L +  L  G
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LI+ +C  G++ +A  L  EM      PD VTY+ L++G  +Q +  EA+
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 380

Query: 241 RLLDQMKRRGIKPDHISF-----NPTRLTYN---ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      P  +++     N + + +    ALI+G C       A+ +   MV + 
Sbjct: 381 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERN 440

Query: 293 ITPDDNTYFSLIEG 306
             P +  Y  +I G
Sbjct: 441 HKPGEAVYNVIIHG 454



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 161/307 (52%), Gaps = 27/307 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY +F+ G C   R+EEA  ++++M E GL P  V+Y+T+I G+C KG 
Sbjct: 211 MTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF  + EMV++G+ P A TY+ LI  L   R++ EA D+ +EM + G+ PD  TY  
Sbjct: 271 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC  G+  KA  LHDEMIHKG  P  +TY+ LI  L+KQ R  EA +L    + + 
Sbjct: 331 LINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEE 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  V ++ LI+ +C+N   +   +L+K                   G C +G + EA 
Sbjct: 391 SVPSDVTYDTLIE-NCSNIEFKSVVALIK-------------------GFCMKGLMHEAD 430

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ + M  R  KP           YN +I G C+      A  L +EM+  G  P   T 
Sbjct: 431 RVFESMVERNHKPGEA-------VYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTV 483

Query: 301 FSLIEGI 307
            +LI+ +
Sbjct: 484 ITLIKAL 490



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 28/265 (10%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M++  + P   TYN+LI       ++ +      EM   G +P+ +TYN LI+ YC+ G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             +AF L   M  KG+QP +++Y  +I  L ++  M EA ++ E    KG  PD V +N 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           L++G+C  GN  +A  +  EM R  V P  VTY  L++  C+   +  A    DQM+ RG
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 251 IKPDHIS----------------------------FNPTRLTYNALIQGLCKNQEGDLAE 282
           ++P+  +                            F+P+ +TYNA I G C  +  + A 
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI 307
            +++EMV KG+ PD  +Y ++I G 
Sbjct: 241 GVVQEMVEKGLAPDVVSYSTIISGF 265



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 124/266 (46%), Gaps = 50/266 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY S + G+C+  RL EA  + ++M + GL P   TY TLI+ YC +G+
Sbjct: 281 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGD 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           L  A    DEM+ +G +P A TY++LI+ L                              
Sbjct: 341 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDT 400

Query: 91  --------------------LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                M+  M EAD + + M E+   P    YN++I+G+CR GN
Sbjct: 401 LIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGN 460

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KAF+L+ EMIH G  P  +T  +LI  L K+    E  ++  + L    L +  +   
Sbjct: 461 LPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKV 520

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKV 216
           L++ +   GN+E   ++ +  +++ +
Sbjct: 521 LVEINHKEGNMEAVLNVSRLYNKLSL 546


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 185/317 (58%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG++PD+ T+G+F+ G  K G++ EA++  ++M ++GL+P    Y  LI+G+   GN
Sbjct: 445 IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGN 504

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S    +   G++P   T +  IH LL   ++ EA  +  E+ EKG+VPD  TY+ 
Sbjct: 505 LMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSS 564

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G  +KAF LHDEM  KGI P +  Y +L+  L K   +  A +LF+    KG
Sbjct: 565 LISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 624

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V ++ +IDG+C + N+  AFSL  EM    V P    YN L+HG C++G +E+A 
Sbjct: 625 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 684

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M ++G          T L++N LI G CK+ +   A +L +EM++K I PD  TY
Sbjct: 685 NLFREMLQKGF--------ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTY 736

Query: 301 FSLIEGIASVDKAAESS 317
            ++I+      K  E++
Sbjct: 737 TTVIDWHCKAGKMEEAN 753



 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 174/316 (55%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + GV PD  T  +F+ G+ K GR++EA ++  ++KE GLVP   TY++LI G+C +G 
Sbjct: 515 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 574

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF   DEM  +GI P    YN L+  L     +  A  +   M EKG+ PDS+TY+ 
Sbjct: 575 VEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYST 634

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+  N  +AFSL  EM  KG+QP    Y +L+    K+  M +A  LF   L KG
Sbjct: 635 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 694

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                + FN LIDG+C +  I+ A  L +EM   ++ PD VTY T++   C+ GK+EEA 
Sbjct: 695 -FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN 753

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M+ R +  D +       TY +L+ G  K  +      L  +MV+KG+ PD+ TY
Sbjct: 754 LLFKEMQERNLIVDTV-------TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTY 806

Query: 301 FSLIEGIASVDKAAES 316
             +I      D   E+
Sbjct: 807 GLVIYAHCKEDNLVEA 822



 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 172/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R + P + +YG+ ++G+C    L  A+++LE+M  +GL P  V Y+TLI GY ++G 
Sbjct: 340 MEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGR 399

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D M   G+ P    YN +I  L    KM EA   L E+  +G+ PD++T+  
Sbjct: 400 IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGA 459

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I GY + G   +A    DEM+  G+ P    YT LI    K   ++EA  +F +  A G
Sbjct: 460 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG 519

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+   +A I G   NG ++ A  +  E+    + PD  TY++L+ G C+QG+VE+A 
Sbjct: 520 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 579

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M  +GI P+          YNAL+ GLCK+ +   A +L   M  KG+ PD  TY
Sbjct: 580 ELHDEMCLKGIAPN-------IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTY 632

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G    +  AE+
Sbjct: 633 STMIDGYCKSENVAEA 648



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 170/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+S T+   + G C+E  +  A  +L++M++  LVP+AV+Y  +I+G C+  +
Sbjct: 305 MITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 364

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A    ++M   G+ P    Y+ LI     E ++ EA  +L  M   G+ PD   YN 
Sbjct: 365 LSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 424

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   + G  ++A +   E+  +G++P  +T+ + I   SK  +M EA + F+  L  G
Sbjct: 425 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 484

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+  ++  LI+GH   GN+  A S+ + +  + V PD  T +  +HG  + G+V+EA 
Sbjct: 485 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 544

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  ++K +G+ PD         TY++LI G CK  E + A EL  EM  KGI P+   Y
Sbjct: 545 KVFSELKEKGLVPD-------VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 597

Query: 301 FSLIEGIA 308
            +L++G+ 
Sbjct: 598 NALVDGLC 605



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 165/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++YTY    +G+C+  R+ EA    E+M++ GL P     + LIDG+  +G+
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++     +D MV  GI     TYN+LIH L    KM +A ++LK M   G  P+S T+ +
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR  N  +A  L DEM  + + P+ ++Y ++I  L     +  A++L E     G
Sbjct: 320 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 379

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V+++ LI G+ + G IE A  LL  M    V PD   YN ++    + GK+EEA 
Sbjct: 380 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 439

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +++ RG+KPD +       T+ A I G  K  +   A +   EM+  G+ P++  Y
Sbjct: 440 TYLLEIQGRGLKPDAV-------TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 492

Query: 301 FSLIEG 306
             LI G
Sbjct: 493 TVLING 498



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 159/289 (55%), Gaps = 8/289 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GVQP S+ Y + V G CKEG +E+A  +  +M + G   T +++NTLIDGYC    
Sbjct: 655 MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCK 713

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM+ + IMP   TY  +I       KM EA+ + KEM E+ ++ D++TY  
Sbjct: 714 IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTS 773

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY + G + + F+L ++M+ KG++P  +TY  +I+   K++ ++EA +L +  + KG
Sbjct: 774 LMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG 833

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ML    + + LI   C   ++  A  LL EM  + + P     +TL+      GK++EA 
Sbjct: 834 MLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEAT 893

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
           R+ + +K  G+ PD         T   L+ G   + + + A  L++++V
Sbjct: 894 RVFEGVKSLGLVPDTT-------TLIDLVNGNLNDTDSEDARNLIKQLV 935



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 142/285 (49%), Gaps = 7/285 (2%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           L  M E GLVP   TY  +  G C    +  A    +EM K G+ P  +  + LI   + 
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           E  + E   +   M   GI  + ITYN+LI+G C+ G  +KA  +   MI  G +P   T
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           +  LI    +++ M  A +L +    + ++P  V + A+I+G C   ++  A  LL++M 
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 376

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              + P+ V Y+TL+ G   +G++EEARRLLD M   G+ PD          YNA+I  L
Sbjct: 377 FSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPD-------IFCYNAIISCL 429

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            K  + + A   L E+  +G+ PD  T+ + I G +   K  E++
Sbjct: 430 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 474


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 179/315 (56%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+ YTY   + G C  G LE       +M+ NG +P  VTYNT+ID YC    
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M  +G+ P   +YN++I+ L  E +M E  ++L+EM ++  VPD +T+N 
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC  GN  +A  LH EM+  G+ P ++TYT+LI  + K   +  A +  +    +G
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRG 373

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +  LIDG    G +++A+ ++KEM      P  +TYN L++G C  G++E+A 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  RG  PD +S       Y+ +I G C+NQE + A +L  EMV+KGI+PD  TY
Sbjct: 434 GLLQEMIERGFIPDVVS-------YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATY 486

Query: 301 FSLIEGIASVDKAAE 315
            SLI+G+    +  E
Sbjct: 487 SSLIQGLCKQRRLGE 501



 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 186/326 (57%), Gaps = 8/326 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  TY + ++ MCK G L  A   L+QM++ GL P   TY TLIDG+  +G 
Sbjct: 334 MVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+    EMV+ G  PT  TYN LI+   +  +M +A  +L+EM E+G +PD ++Y+ 
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYST 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR    +KAF L  EM+ KGI P + TY+SLI  L KQ R+ E   LF+  L+ G
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V + +LI+ +C  G++++A  L  EM +    PD VTYN L++G  +Q + +EA+
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYN--------ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      P+ I++N      N        AL++G C     + A+ +L  M+ KG
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 293 ITPDDNTYFSLIEGIASVDKAAESSN 318
              ++  Y  +I G + V    ++ N
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYN 659



 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  +Y   ++G+C+EG+++E S +LE+M +   VP  VT+NTLI+GYCN GN
Sbjct: 264 MALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGN 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EMVK G+ P   TY  LI+ +     +  A + L +M ++G+ P+  TY  
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G  K+A+ +  EM+  G  PT++TY +LI       RM +A  L +  + +G
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V ++ +I G C N  +E+AF L  EM    + PD  TY++L+ G C+Q ++ E  
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ PD +       TY +LI   C   + D A  L  EM+ KG +PD  TY
Sbjct: 504 DLFQEMLSLGLPPDEV-------TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTY 556

Query: 301 FSLIEGIASVDKAAES 316
             LI G     +  E+
Sbjct: 557 NVLINGFNKQSRTKEA 572



 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 165/349 (47%), Gaps = 65/349 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY + ++G C  GR+E+AS +L++M E G +P  V+Y+T+I G+C    
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF  + EMV +GI P  +TY+ LI  L  +R++ E  D+ +EM   G+ PD +TY  
Sbjct: 464 LEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR--------------- 165
           LIN YC  G+  KA  LHDEMI KG  P ++TY  LI   +KQ+R               
Sbjct: 524 LINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE 583

Query: 166 -----------------------------------MIEADQLFENFLAKGMLPDIVMFNA 190
                                              M EAD++ E+ L KG   +  ++N 
Sbjct: 584 SVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNV 643

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +I GH   GNIE+A++L KEM      P  VT   L      +GK  E  +LLD      
Sbjct: 644 IIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDY----- 698

Query: 251 IKPDHISFNPTRLTYNALIQGL--CKNQEG--DLAEELLREMVSKGITP 295
                 +    R+T  AL + L    ++EG  D    +L++M   G+ P
Sbjct: 699 ------TLKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSGLLP 741



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 177 LAK--GMLPDIVMFNALIDGHC-TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           LAK  G +P ++ +NA++D    T  +++ A  + KEM    V P+  TYN L+ G C  
Sbjct: 157 LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTA 216

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G +E       +M+R G  P+ +       TYN +I   CK ++   A +LLR M  KG+
Sbjct: 217 GNLEMGLXFFGEMERNGCLPNVV-------TYNTIIDAYCKLRKIGEAFKLLRLMALKGL 269

Query: 294 TPDDNTYFSLIEGIASVDKAAESS 317
            P+  +Y  +I G+    +  E+S
Sbjct: 270 NPNLISYNVVINGLCREGQMKETS 293


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 179/315 (56%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+ YTY   + G C  G LE       +M+ NG +P  VTYNT+ID YC    
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M  +G+ P   +YN++I+ L  E +M E  ++L+EM ++  VPD +T+N 
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC  GN  +A  LH EM+  G+ P ++TYT+LI  + K   +  A +  +    +G
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRG 373

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +  LIDG    G +++A+ ++KEM      P  +TYN L++G C  G++E+A 
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  RG  PD +S       Y+ +I G C+NQE + A +L  EMV+KGI+PD  TY
Sbjct: 434 GLLQEMIERGFIPDVVS-------YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATY 486

Query: 301 FSLIEGIASVDKAAE 315
            SLI+G+    +  E
Sbjct: 487 SSLIQGLCKQRRLGE 501



 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 186/326 (57%), Gaps = 8/326 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  TY + ++ MCK G L  A   L+QM++ GL P   TY TLIDG+  +G 
Sbjct: 334 MVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+    EMV+ G  PT  TYN LI+   +  +M +A  +L+EM E+G +PD ++Y+ 
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYST 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR    +KAF L  EM+ KGI P + TY+SLI  L KQ R+ E   LF+  L+ G
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V + +LI+ +C  G++++A  L  EM +    PD VTYN L++G  +Q + +EA+
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYN--------ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      P+ I++N      N        AL++G C     + A+ +L  M+ KG
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 293 ITPDDNTYFSLIEGIASVDKAAESSN 318
              ++  Y  +I G + V    ++ N
Sbjct: 634 YKLNEEVYNVIIHGHSKVGNIEKAYN 659



 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  +Y   ++G+C+EG+++E S +LE+M +   VP  VT+NTLI+GYCN GN
Sbjct: 264 MALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGN 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EMVK G+ P   TY  LI+ +     +  A + L +M ++G+ P+  TY  
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G  K+A+ +  EM+  G  PT++TY +LI       RM +A  L +  + +G
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V ++ +I G C N  +E+AF L  EM    + PD  TY++L+ G C+Q ++ E  
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ PD +       TY +LI   C   + D A  L  EM+ KG +PD  TY
Sbjct: 504 DLFQEMLSLGLPPDEV-------TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTY 556

Query: 301 FSLIEGIASVDKAAES 316
             LI G     +  E+
Sbjct: 557 NVLINGFNKQSRTKEA 572



 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 165/349 (47%), Gaps = 65/349 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY + ++G C  GR+E+AS +L++M E G +P  V+Y+T+I G+C    
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF  + EMV +GI P  +TY+ LI  L  +R++ E  D+ +EM   G+ PD +TY  
Sbjct: 464 LEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR--------------- 165
           LIN YC  G+  KA  LHDEMI KG  P ++TY  LI   +KQ+R               
Sbjct: 524 LINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE 583

Query: 166 -----------------------------------MIEADQLFENFLAKGMLPDIVMFNA 190
                                              M EAD++ E+ L KG   +  ++N 
Sbjct: 584 SVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNV 643

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +I GH   GNIE+A++L KEM      P  VT   L      +GK  E  +LLD      
Sbjct: 644 IIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDY----- 698

Query: 251 IKPDHISFNPTRLTYNALIQGL--CKNQEG--DLAEELLREMVSKGITP 295
                 +    R+T  AL + L    ++EG  D    +L++M   G+ P
Sbjct: 699 ------TLKSCRITEAALAKVLIGINSKEGNMDAVFNVLKDMALSGLLP 741



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 177 LAK--GMLPDIVMFNALIDGHC-TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           LAK  G +P ++ +NA++D    T  +++ A  + KEM    V P+  TYN L+ G C  
Sbjct: 157 LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTA 216

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G +E       +M+R G  P+ +       TYN +I   CK ++   A +LLR M  KG+
Sbjct: 217 GNLEMGLFFFGEMERNGCLPNVV-------TYNTIIDAYCKLRKIGEAFKLLRLMALKGL 269

Query: 294 TPDDNTYFSLIEGIASVDKAAESS 317
            P+  +Y  +I G+    +  E+S
Sbjct: 270 NPNLISYNVVINGLCREGQMKETS 293


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 185/317 (58%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG++PD+ T+G+F+ G  K G++ EA++  ++M ++GL+P    Y  LI+G+   GN
Sbjct: 534 IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGN 593

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S    +   G++P   T +  IH LL   ++ EA  +  E+ EKG+VPD  TY+ 
Sbjct: 594 LMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSS 653

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G  +KAF LHDEM  KGI P +  Y +L+  L K   +  A +LF+    KG
Sbjct: 654 LISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 713

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V ++ +IDG+C + N+  AFSL  EM    V P    YN L+HG C++G +E+A 
Sbjct: 714 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 773

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M ++G          T L++N LI G CK+ +   A +L +EM++K I PD  TY
Sbjct: 774 NLFREMLQKGF--------ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTY 825

Query: 301 FSLIEGIASVDKAAESS 317
            ++I+      K  E++
Sbjct: 826 TTVIDWHCKAGKMEEAN 842



 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 174/316 (55%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + GV PD  T  +F+ G+ K GR++EA ++  ++KE GLVP   TY++LI G+C +G 
Sbjct: 604 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 663

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF   DEM  +GI P    YN L+  L     +  A  +   M EKG+ PDS+TY+ 
Sbjct: 664 VEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYST 723

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+  N  +AFSL  EM  KG+QP    Y +L+    K+  M +A  LF   L KG
Sbjct: 724 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 783

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                + FN LIDG+C +  I+ A  L +EM   ++ PD VTY T++   C+ GK+EEA 
Sbjct: 784 -FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN 842

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M+ R +  D +       TY +L+ G  K  +      L  +MV+KG+ PD+ TY
Sbjct: 843 LLFKEMQERNLIVDTV-------TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTY 895

Query: 301 FSLIEGIASVDKAAES 316
             +I      D   E+
Sbjct: 896 GLVIYAHCKEDNLVEA 911



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R + P + +YG+ ++G+C    L  A+++LE+M  +GL P  V Y+ LI  Y ++G 
Sbjct: 429 MEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGR 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D M   G+ P    YN +I  L    KM EA   L E+  +G+ PD++T+  
Sbjct: 489 IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGA 548

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I GY + G   +A    DEM+  G+ P    YT LI    K   ++EA  +F    A G
Sbjct: 549 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALG 608

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+   +A I G   NG ++ A  +  E+    + PD  TY++L+ G C+QG+VE+A 
Sbjct: 609 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 668

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M  +GI P+          YNAL+ GLCK+ +   A +L   M  KG+ PD  TY
Sbjct: 669 ELHDEMCLKGIAPN-------IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTY 721

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G    +  AE+
Sbjct: 722 STMIDGYCKSENVAEA 737



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 171/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+S T+   + G C+E  +  A  +L++M++  LVP+AV+Y  +I+G C+  +
Sbjct: 394 MVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 453

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A    ++M   G+ P    Y++LI     E ++ EA  +L  M   G+ PD   YN 
Sbjct: 454 LSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 513

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   + G  ++A +   E+  +G++P  +T+ + I   SK  +M EA + F+  L  G
Sbjct: 514 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 573

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+  ++  LI+GH   GN+  A S+ + +  + V PD  T +  +HG  + G+V+EA 
Sbjct: 574 LMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 633

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  ++K +G+ PD         TY++LI G CK  E + A EL  EM  KGI P+   Y
Sbjct: 634 KVFSELKEKGLVPD-------VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 686

Query: 301 FSLIEGIA 308
            +L++G+ 
Sbjct: 687 NALVDGLC 694



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 164/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++YTY    +G+C+  R+ EA    E+M++ GL P     + LIDG+  +G+
Sbjct: 289 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 348

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++     +D MV  GI     TYN+LIH L    KM +A ++LK M   G  P+S T+ +
Sbjct: 349 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCL 408

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR  N  +A  L DEM  + + P+ ++Y ++I  L     +  A++L E     G
Sbjct: 409 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 468

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V+++ LI  + + G IE A  LL  M    V PD   YN ++    + GK+EEA 
Sbjct: 469 LKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 528

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +++ RG+KPD +       T+ A I G  K  +   A +   EM+  G+ P++  Y
Sbjct: 529 TYLLEIQGRGLKPDAV-------TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 581

Query: 301 FSLIEG 306
             LI G
Sbjct: 582 TVLING 587



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 159/289 (55%), Gaps = 8/289 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S+GVQP S+ Y + V G CKEG +E+A  +  +M + G   T +++NTLIDGYC    
Sbjct: 744  MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCK 802

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ A     EM+ + IMP   TY  +I       KM EA+ + KEM E+ ++ D++TY  
Sbjct: 803  IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTS 862

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+ GY + G + + F+L ++M+ KG++P  +TY  +I+   K++ ++EA +L +  + KG
Sbjct: 863  LMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKG 922

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            ML    + + LI   C   ++  A  LL EM  + + P     NTL+      GK++EA 
Sbjct: 923  MLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEAT 982

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            R+ + +K  G+ PD         T   L+ G   + + + A  L++++V
Sbjct: 983  RVFEGVKSLGLVPDTT-------TLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 165/344 (47%), Gaps = 42/344 (12%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D YTY   V  +CK G L  A R+L +M E GL P    Y+ +I+G C  G+++ A   +
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELK 286

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M ++G++P   TY ++   L   ++M EA    +EM + G+ PD    + LI+G+ R 
Sbjct: 287 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 346

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G+  +   + D M+  GI   ++TY  LI  L K  +M +A ++ +  +  G  P+   F
Sbjct: 347 GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTF 406

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR---------------- 232
             LI+G+C   N+ RA  LL EM++  + P  V+Y  +++G C                 
Sbjct: 407 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTF 466

Query: 233 -------------------QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
                              +G++EEARRLLD M   G+ PD          YNA+I  L 
Sbjct: 467 SGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPD-------IFCYNAIISCLS 519

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           K  + + A   L E+  +G+ PD  T+ + I G +   K  E++
Sbjct: 520 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 563



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 152/302 (50%), Gaps = 7/302 (2%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           S +  + K G +E   ++   M +  +     TY  L+   C  G+L  A     EM ++
Sbjct: 198 SLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEK 257

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G+ P    Y+L+I  +     + EA ++ + MGEKG+VP++ TY I+  G CR     +A
Sbjct: 258 GLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEA 317

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
               +EM   G++P     ++LI    ++  + E  ++ +  ++ G+  +++ +N LI G
Sbjct: 318 KLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHG 377

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            C  G +E+A  +LK M  +   P+  T+  L+ G CR+  +  A  LLD+M++R + P 
Sbjct: 378 LCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPS 437

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
            +S       Y A+I GLC  ++  LA +LL +M   G+ P+   Y  LI   AS  +  
Sbjct: 438 AVS-------YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIE 490

Query: 315 ES 316
           E+
Sbjct: 491 EA 492



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 28/237 (11%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA ++        I+   I  N L+    +CG  +  + +++ M+   +   + TYT L+
Sbjct: 176 EAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLV 235

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K   +  A ++      KG+ P+  +++ +I+G C  G+I+ A  L + M    + 
Sbjct: 236 GALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLV 295

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------------ 259
           P+  TY  +  G CR  ++ EA+   ++M++ G+KPD+ + +                  
Sbjct: 296 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 355

Query: 260 ---------PTRL-TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                    P  L TYN LI GLCK  + + A E+L+ MV+ G  P+  T+  LIEG
Sbjct: 356 KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEG 412



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 7/192 (3%)

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + ++ILI+ Y R G   +A ++     +  I  +++   SL+  L K   M    +++  
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNG 218

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            L   M  D+  +  L+   C  G++  A  +L EMD   ++P+E  Y+ ++ G C+ G 
Sbjct: 219 MLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGD 278

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           ++EA  L   M  +G+ P+         TY  +  GLC+ +  + A+    EM   G+ P
Sbjct: 279 IDEAVELKRSMGEKGLVPN-------TYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKP 331

Query: 296 DDNTYFSLIEGI 307
           D N   +LI+G 
Sbjct: 332 DYNACSALIDGF 343


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K +G++PD Y Y + +  +CK G + EA ++L  M++ G+ P  V Y T+I G+C  GN
Sbjct: 303 LKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGN 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    DEM ++ I+P   TY  +IH +    KMVEA +M  EM  KG+ PD +TY  
Sbjct: 363 VSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTA 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  K+AFS+H++M+ KG+ P ++TYT+L   L K   +  A++L      KG
Sbjct: 423 LIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKG 482

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +N +++G C  GNIE+   L++EMD    +PD +TY TLM   C+ G++ +A 
Sbjct: 483 LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAH 542

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M  + ++       PT +T+N L+ G C +   +  E L+  M+ KGI P+  T+
Sbjct: 543 ELLRIMLNKRLQ-------PTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTF 595

Query: 301 FSLIE 305
            SL++
Sbjct: 596 NSLMK 600



 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + + PD  TY S + G+CK G++ EA  M  +M   GL P  VTY  LIDGYC  G 
Sbjct: 373 MRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGE 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AFS  ++MV++G+ P   TY  L   L    ++  A+++L EM  KG+ P+  TYN 
Sbjct: 433 MKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNT 492

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ GN ++   L +EM   G  P  +TYT+L+    K   M +A +L    L K 
Sbjct: 493 IVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKR 552

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V FN L++G C +G +E    L++ M    + P+  T+N+LM   C +  +    
Sbjct: 553 LQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATT 612

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  RG+ PD         TYN LI+G CK +    A  L +EMV KG +    TY
Sbjct: 613 EIYKAMHDRGVMPD-------SNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATY 665

Query: 301 FSLIEGIASVDKAAES 316
            +LI G     K  E+
Sbjct: 666 DALIRGFYKRKKFVEA 681



 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 177/312 (56%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  ++ +    +  +C+ G++ EA  +L QM + G  P  V+Y  ++ GYC  G L+  
Sbjct: 237 GVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKV 296

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DE+  +G+ P    YN +I  L    ++VEA+ +L+ M + G+ PD++ Y  +I+G
Sbjct: 297 LKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISG 356

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ GN   A  L DEM  K I P ++TYTS+I  + K  +M+EA ++F   L KG+ PD
Sbjct: 357 FCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPD 416

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V + ALIDG+C  G ++ AFS+  +M +  + P+ VTY  L  G C+ G+++ A  LL 
Sbjct: 417 EVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLH 476

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R+G++P+         TYN ++ GLCK    +   +L+ EM   G  PD  TY +L+
Sbjct: 477 EMSRKGLQPN-------VYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLM 529

Query: 305 EGIASVDKAAES 316
           +    + + A++
Sbjct: 530 DAYCKMGEMAKA 541



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 175/338 (51%), Gaps = 31/338 (9%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY-CNKGN 60
           K  G  P    +  +   + + G + EA ++  ++   G+V +  + N  +    CN   
Sbjct: 165 KDWGSHP--LVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEG 222

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A    +E  + G+     + N+++H L    K+ EA ++L +M ++G  PD ++Y +
Sbjct: 223 IKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGV 282

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYCR G   K   L DE+  KG++P    Y ++I +L K   ++EA+QL       G
Sbjct: 283 VVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWG 342

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++  +I G C  GN+  A  L  EM R K+ PD VTY +++HG C+ GK+ EAR
Sbjct: 343 VFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAR 402

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            + ++M  +G++PD +++                             P  +TY AL  GL
Sbjct: 403 EMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGL 462

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           CKN E D+A ELL EM  KG+ P+  TY +++ G+  +
Sbjct: 463 CKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKI 500



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 135/251 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  TY +   G+CK G ++ A+ +L +M   GL P   TYNT+++G C  GN
Sbjct: 443 MVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGN 502

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      +EM   G  P   TY  L+       +M +A ++L+ M  K + P  +T+N+
Sbjct: 503 IEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNV 562

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L + M+ KGI P   T+ SL+     +N M    ++++    +G
Sbjct: 563 LMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRG 622

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N LI GHC   N++ A+ L KEM          TY+ L+ G  ++ K  EAR
Sbjct: 623 VMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEAR 682

Query: 241 RLLDQMKRRGI 251
           +L ++M++ G+
Sbjct: 683 KLFEEMRKHGL 693



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 35/246 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+QP+ YTY + V+G+CK G +E+  +++E+M   G  P  +TY TL+D YC  G 
Sbjct: 478 MSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGE 537

Query: 61  LEMAFSFR-----------------------------------DEMVKQGIMPTASTYNL 85
           +  A                                       + M+++GIMP A+T+N 
Sbjct: 538 MAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNS 597

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+ +  ++  M    ++ K M ++G++PDS TYNILI G+C+  N K+A+ LH EM+ KG
Sbjct: 598 LMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKG 657

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
              T  TY +LI    K+ + +EA +LFE     G++ +  +++  +D +   GN E   
Sbjct: 658 YSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITL 717

Query: 206 SLLKEM 211
            L  E 
Sbjct: 718 ELCDEF 723



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 77/142 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++ T+ S +   C +  +   + + + M + G++P + TYN LI G+C   N
Sbjct: 583 MLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARN 642

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EMV++G   TA+TY+ LI      +K VEA  + +EM + G+V +   Y+I
Sbjct: 643 MKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDI 702

Query: 121 LINGYCRCGNAKKAFSLHDEMI 142
            ++     GN +    L DE +
Sbjct: 703 FVDVNYEEGNWEITLELCDEFM 724



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 37/74 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G    + TY + + G  K  +  EA ++ E+M+++GLV     Y+  +D    +GN
Sbjct: 653 MVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGN 712

Query: 61  LEMAFSFRDEMVKQ 74
            E+     DE + +
Sbjct: 713 WEITLELCDEFMTE 726


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 185/317 (58%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG++PD+ T+G+F+ G  K G++ EA++  ++M ++GL+P    Y  LI+G+   GN
Sbjct: 246 IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGN 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S    +   G++P   T +  IH LL   ++ EA  +  E+ EKG+VPD  TY+ 
Sbjct: 306 LMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSS 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G  +KAF LHDEM  KGI P +  Y +L+  L K   +  A +LF+    KG
Sbjct: 366 LISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V ++ +IDG+C + N+  AFSL  EM    V P    YN L+HG C++G +E+A 
Sbjct: 426 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M ++G          T L++N LI G CK+ +   A +L +EM++K I PD  TY
Sbjct: 486 NLFREMLQKGF--------ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTY 537

Query: 301 FSLIEGIASVDKAAESS 317
            ++I+      K  E++
Sbjct: 538 TTVIDWHCKAGKMEEAN 554



 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + GV PD  T  +F+ G+ K GR++EA ++  ++KE GLVP   TY++LI G+C +G 
Sbjct: 316 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 375

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF   DEM  +GI P    YN L+  L     +  A  +   M EKG+ PDS+TY+ 
Sbjct: 376 VEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYST 435

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+  N  +AFSL  EM  KG+QP    Y +L+    K+  M +A  LF   L KG
Sbjct: 436 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 495

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                + FN LIDG+C +  I+ A  L +EM   ++ PD VTY T++   C+ GK+EEA 
Sbjct: 496 -FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN 554

Query: 241 RLLDQMKRRGIKPDHI----------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
            L  +M+ R +  D +             P  +TY  +I   CK      A +L  E+V 
Sbjct: 555 LLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVG 614

Query: 291 KGITPDDNTYFSLIEGIASVDKAAESS 317
           KG+      +  LI  +   +   E+S
Sbjct: 615 KGMLTKGTIHDLLITALCKREDLTEAS 641



 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 172/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R + P + +YG+ ++G+C    L  A+++LE+M  +GL P  V Y+TLI GY ++G 
Sbjct: 141 MEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGR 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D M   G+ P    YN +I  L    KM EA   L E+  +G+ PD++T+  
Sbjct: 201 IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGA 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I GY + G   +A    DEM+  G+ P    YT LI    K   ++EA  +F +  A G
Sbjct: 261 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+   +A I G   NG ++ A  +  E+    + PD  TY++L+ G C+QG+VE+A 
Sbjct: 321 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M  +GI P+          YNAL+ GLCK+ +   A +L   M  KG+ PD  TY
Sbjct: 381 ELHDEMCLKGIAPN-------IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTY 433

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G    +  AE+
Sbjct: 434 STMIDGYCKSENVAEA 449



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 170/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+S T+   + G C+E  +  A  +L++M++  LVP+AV+Y  +I+G C+  +
Sbjct: 106 MITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 165

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A    ++M   G+ P    Y+ LI     E ++ EA  +L  M   G+ PD   YN 
Sbjct: 166 LSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 225

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   + G  ++A +   E+  +G++P  +T+ + I   SK  +M EA + F+  L  G
Sbjct: 226 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 285

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+  ++  LI+GH   GN+  A S+ + +  + V PD  T +  +HG  + G+V+EA 
Sbjct: 286 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 345

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  ++K +G+ PD         TY++LI G CK  E + A EL  EM  KGI P+   Y
Sbjct: 346 KVFSELKEKGLVPD-------VFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 398

Query: 301 FSLIEGIA 308
            +L++G+ 
Sbjct: 399 NALVDGLC 406



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 165/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++YTY    +G+C+  R+ EA    E+M++ GL P     + LIDG+  +G+
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++     +D MV  GI     TYN+LIH L    KM +A ++LK M   G  P+S T+ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR  N  +A  L DEM  + + P+ ++Y ++I  L     +  A++L E     G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V+++ LI G+ + G IE A  LL  M    V PD   YN ++    + GK+EEA 
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +++ RG+KPD +       T+ A I G  K  +   A +   EM+  G+ P++  Y
Sbjct: 241 TYLLEIQGRGLKPDAV-------TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 293

Query: 301 FSLIEG 306
             LI G
Sbjct: 294 TVLING 299



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 164/337 (48%), Gaps = 58/337 (17%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ P+ + Y + V G+CK G ++ A ++ + M E GL P +VTY+T+IDGYC   N+  
Sbjct: 389 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 448

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG------------- 110
           AFS   EM  +G+ P +  YN L+H    E  M +A ++ +EM +KG             
Sbjct: 449 AFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDG 508

Query: 111 ---------------------IVPDSITYNILINGYCRCGNAKKA--------------- 134
                                I+PD +TY  +I+ +C+ G  ++A               
Sbjct: 509 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 568

Query: 135 --FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
             F+L ++M+ KG++P  +TY  +I+   K++ ++EA +L +  + KGML    + + LI
Sbjct: 569 TVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLI 628

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
              C   ++  A  LL EM  + + P     +TL+      GK++EA R+ + +K  G+ 
Sbjct: 629 TALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLV 688

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
           PD         T   L+ G   + + + A  L++++V
Sbjct: 689 PD-------TTTLIDLVNGNLNDTDSEDARNLIKQLV 718



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 131/263 (49%), Gaps = 18/263 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GVQP S+ Y + V G CKEG +E+A  +  +M + G   T +++NTLIDGYC    
Sbjct: 456 MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSCK 514

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE------------ 108
           ++ A     EM+ + IMP   TY  +I       KM EA+ + KEM E            
Sbjct: 515 IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALF 574

Query: 109 -----KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
                KG+ PD +TY ++I  +C+  N  +AF L DE++ KG+      +  LI  L K+
Sbjct: 575 EKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKR 634

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
             + EA +L +     G+ P +   + L+      G ++ A  + + +  + + PD  T 
Sbjct: 635 EDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTL 694

Query: 224 NTLMHGRCRQGKVEEARRLLDQM 246
             L++G       E+AR L+ Q+
Sbjct: 695 IDLVNGNLNDTDSEDARNLIKQL 717



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 16/104 (15%)

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P+  TY  +  G CR  ++ EA+   ++M++ G+KPD+ +        +ALI G  +  E
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNA-------CSALIDGFMR--E 58

Query: 278 GDLAEELLR---EMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
           GD+ +E+LR    MVS GI  +  TY  LI G+     ++KAAE
Sbjct: 59  GDI-DEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAE 101


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/334 (36%), Positives = 183/334 (54%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+ YTY   +  +CK G++ EA R+L +M   G+ P  V Y TLIDG+C  GN
Sbjct: 214 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+   DEM K+ I P   TY  +I  L    +++EAD +  EM  K + PD +TY  
Sbjct: 274 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 333

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  K+AFSLH++M+  G+ P ++TYT+L   L K   +  A++L      KG
Sbjct: 334 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 393

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I  +N+L++G C  GNI++A  L+K+M+    HPD VTY TLM   C+  ++  A 
Sbjct: 394 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 453

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL QM  R ++P  ++FN                            P   TYN+LI+  
Sbjct: 454 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 513

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C         E+ R M +KG+ PD NTY  LI+G
Sbjct: 514 CIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKG 547



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R + PD  TY + + G+C+ GR+ EA ++  +M    L P  VTY  LIDGYC +G 
Sbjct: 284 MQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AFS  ++M++ G+ P   TY  L   L    ++  A+++L EM  KG+  +  TYN 
Sbjct: 344 MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNS 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ GN  +A  L  +M   G  P  +TYT+L+    K   M+ A +L    L + 
Sbjct: 404 LVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRE 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V FN L++G C +G +E    LLK M    + P+  TYN+L+   C +  +    
Sbjct: 464 LQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATT 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  +G+ PD         TYN LI+G CK +    A  L R+MV KG     ++Y
Sbjct: 524 EIYRGMCAKGVVPDGN-------TYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSY 576

Query: 301 FSLIEGIASVDKAAES 316
            +LI+G     K  E+
Sbjct: 577 NALIKGFYKRKKFLEA 592



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 159/285 (55%), Gaps = 14/285 (4%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLI-------DGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           A ++ ++M   GL+ +  + N  I       DG       E      +EM  +G+ P   
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPY 224

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TYN +I  L    K+ EA+ +L+EM  +GI PD + Y  LI+G+C+ GN   A+ L DEM
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             + I P  +TYT++I  L +  R++EAD+LF   + K + PD V + ALIDG+C  G +
Sbjct: 285 QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKM 344

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + AFSL  +M +M + P+ VTY  L  G C+ G+V+ A  LL +M R+G++ +       
Sbjct: 345 KEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNI------ 398

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             TYN+L+ GLCK    D A +L+++M   G  PD  TY +L++ 
Sbjct: 399 -YTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 442



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 151/299 (50%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  TY +   G+CK G ++ A+ +L +M   GL     TYN+L++G C  GN
Sbjct: 354 MLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M   G  P A TY  L+      R+MV A ++L++M ++ + P  +T+N+
Sbjct: 414 IDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNV 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L   M+ KGI P   TY SLI     +N M    +++    AKG
Sbjct: 474 LMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKG 533

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N LI GHC   N++ A+ L ++M     +    +YN L+ G  ++ K  EAR
Sbjct: 534 VVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEAR 593

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L +QM+R G+  D       R  YN          + +L  EL  E + K +  D  T
Sbjct: 594 ELFEQMRREGLVAD-------REIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQT 645



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD+ TY + +   CK   +  A  +L QM +  L PT VT+N L++G+C  G 
Sbjct: 424 MEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGM 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE        M+++GIMP A+TYN LI +  +   M    ++ + M  KG+VPD  TYNI
Sbjct: 484 LEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNI 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A+ LH +M+ KG   T+ +Y +LI    K+ + +EA +LFE    +G
Sbjct: 544 LIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREG 603

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           ++ D  ++N   D +   G +E    L  E     +  D  T NT
Sbjct: 604 LVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKNT 648



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 169 ADQLFENFLAKGMLPDIVMFNALI-------DGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           A +LF+  L  G+L  +   N  I       DG       E    L++EM    + P+  
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPY 224

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TYN ++   C+ GKV EA R+L +M   GI PD +        Y  LI G CK      A
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGV-------IYTTLIDGFCKLGNVSSA 277

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             L  EM  + I+PD  TY ++I G+    +  E+
Sbjct: 278 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEA 312


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/334 (36%), Positives = 183/334 (54%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+ YTY   +  +CK G++ EA R+L +M   G+ P  V Y TLIDG+C  GN
Sbjct: 314 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 373

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+   DEM K+ I P   TY  +I  L    +++EAD +  EM  K + PD +TY  
Sbjct: 374 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 433

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  K+AFSLH++M+  G+ P ++TYT+L   L K   +  A++L      KG
Sbjct: 434 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 493

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I  +N+L++G C  GNI++A  L+K+M+    HPD VTY TLM   C+  ++  A 
Sbjct: 494 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 553

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL QM  R ++P  ++FN                            P   TYN+LI+  
Sbjct: 554 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 613

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C         E+ R M +KG+ PD NTY  LI+G
Sbjct: 614 CIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKG 647



 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 180/302 (59%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  ++ +Y      +C+ GR+ EA ++L QM+  G +P  ++Y+T+I+GYC  G L+  
Sbjct: 248 GVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRV 307

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM  +G+ P   TYN +I  L    K+ EA+ +L+EM  +GI PD + Y  LI+G
Sbjct: 308 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDG 367

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ GN   A+ L DEM  + I P  +TYT++I  L +  R++EAD+LF   + K + PD
Sbjct: 368 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 427

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V + ALIDG+C  G ++ AFSL  +M +M + P+ VTY  L  G C+ G+V+ A  LL 
Sbjct: 428 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 487

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R+G++ +         TYN+L+ GLCK    D A +L+++M   G  PD  TY +L+
Sbjct: 488 EMCRKGLELN-------IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM 540

Query: 305 EG 306
           + 
Sbjct: 541 DA 542



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R + PD  TY + + G+C+ GR+ EA ++  +M    L P  VTY  LIDGYC +G 
Sbjct: 384 MQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AFS  ++M++ G+ P   TY  L   L    ++  A+++L EM  KG+  +  TYN 
Sbjct: 444 MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNS 503

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ GN  +A  L  +M   G  P  +TYT+L+    K   M+ A +L    L + 
Sbjct: 504 LVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRE 563

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V FN L++G C +G +E    LLK M    + P+  TYN+L+   C +  +    
Sbjct: 564 LQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATT 623

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  +G+ PD         TYN LI+G CK +    A  L R+MV KG     ++Y
Sbjct: 624 EIYRGMCAKGVVPDGN-------TYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSY 676

Query: 301 FSLIEGIASVDKAAES 316
            +LI+G     K  E+
Sbjct: 677 NALIKGFYKRKKFLEA 692



 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 178/339 (52%), Gaps = 32/339 (9%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC-NKGNLEMAFSF 67
           D   +  F   + + G L+EA ++ ++M   GL+ +  + N  I     +   +++A   
Sbjct: 181 DPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKV 240

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             E  + G+    ++YN++ H L    ++VEA  +L +M  +G +PD I+Y+ +INGYC+
Sbjct: 241 FVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQ 300

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  ++   L +EM  KG++P   TY  +I +L K  ++ EA+++    +++G+ PD V+
Sbjct: 301 VGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVI 360

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LIDG C  GN+  A+ L  EM + K+ PD +TY  ++ G C+ G+V EA +L  +M 
Sbjct: 361 YTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV 420

Query: 248 RRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQEGD 279
            + ++PD +++                             P  +TY AL  GLCK  E D
Sbjct: 421 CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVD 480

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAE 315
            A ELL EM  KG+  +  TY SL+ G+    ++D+A +
Sbjct: 481 TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVK 519



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 151/299 (50%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  TY +   G+CK G ++ A+ +L +M   GL     TYN+L++G C  GN
Sbjct: 454 MLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN 513

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M   G  P A TY  L+      R+MV A ++L++M ++ + P  +T+N+
Sbjct: 514 IDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNV 573

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L   M+ KGI P   TY SLI     +N M    +++    AKG
Sbjct: 574 LMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKG 633

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N LI GHC   N++ A+ L ++M     +    +YN L+ G  ++ K  EAR
Sbjct: 634 VVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEAR 693

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L +QM+R G+  D       R  YN          + +L  EL  E + K +  D  T
Sbjct: 694 ELFEQMRREGLVAD-------REIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQT 745



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD+ TY + +   CK   +  A  +L QM +  L PT VT+N L++G+C  G 
Sbjct: 524 MEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGM 583

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE        M+++GIMP A+TYN LI +  +   M    ++ + M  KG+VPD  TYNI
Sbjct: 584 LEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNI 643

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A+ LH +M+ KG   T+ +Y +LI    K+ + +EA +LFE    +G
Sbjct: 644 LIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREG 703

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           ++ D  ++N   D +   G +E    L  E     +  D  T NT
Sbjct: 704 LVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKNT 748



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 118/259 (45%), Gaps = 43/259 (16%)

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE-ADDMLKEMGEKGIVPDSIT 117
           G L+ A    D+M+  G++ +  + NL I  L  +   ++ A  +  E  E G+  ++ +
Sbjct: 196 GMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTAS 255

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YNI+ +  C+ G                                   R++EA QL     
Sbjct: 256 YNIITHSLCQLG-----------------------------------RVVEAHQLLLQME 280

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G +PD++ ++ +I+G+C  G ++R   L++EM    + P+  TYN ++   C+ GKV 
Sbjct: 281 LRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVA 340

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA R+L +M   GI PD +        Y  LI G CK      A  L  EM  + I+PD 
Sbjct: 341 EAERVLREMISEGIAPDGV-------IYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDF 393

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY ++I G+    +  E+
Sbjct: 394 ITYTAVICGLCQTGRVMEA 412



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 8/204 (3%)

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE-ADQL 172
           D   ++I        G   +A  L D+M++ G+  ++ +    I  LS+    I+ A ++
Sbjct: 181 DPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKV 240

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           F  F   G+  +   +N +    C  G +  A  LL +M+     PD ++Y+T+++G C+
Sbjct: 241 FVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQ 300

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            G+++   +L+++M+ +G+KP     NP   TYN +I  LCK  +   AE +LREM+S+G
Sbjct: 301 VGELQRVLKLIEEMQIKGLKP-----NP--YTYNGVILLLCKTGKVAEAERVLREMISEG 353

Query: 293 ITPDDNTYFSLIEGIASVDKAAES 316
           I PD   Y +LI+G   +   + +
Sbjct: 354 IAPDGVIYTTLIDGFCKLGNVSSA 377


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 185/305 (60%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+ YTY S +  +CK G++ E  ++L +M + G+ P  V Y TLIDG+C  GN
Sbjct: 171 MQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGN 230

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+    EM  + I+P +  ++ LI  L    K+VEAD +  EM +KG  PD +TY  
Sbjct: 231 TQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTA 290

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  KKAF LH++M+  G+ P ++TYT+L   L K   +  A++L      KG
Sbjct: 291 LIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKG 350

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I  +N +++G C  GNI +A  L++EM    +HPD +TY TLM    + G++ +AR
Sbjct: 351 LQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKAR 410

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  RG++       PT +T+N L+ GLC + + +  E LL+ M+ KGI P+  TY
Sbjct: 411 ELLREMLDRGLQ-------PTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATY 463

Query: 301 FSLIE 305
            S+++
Sbjct: 464 NSIMK 468



 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 179/302 (59%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  ++ +Y   ++ + + G++ EA  +L +M+  G +P  V+Y T+IDGYC+ G L+  
Sbjct: 105 GVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKV 164

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM  +G+ P   TY+ +I  L    K+VE + +L+EM ++G+ PD + Y  LI+G
Sbjct: 165 VQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDG 224

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ GN + A+ L  EM  + I P  + +++LI  LS   +++EAD+LF   + KG  PD
Sbjct: 225 FCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPD 284

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V + ALIDG+C  G +++AF L  +M ++ + P+ VTY  L  G C+ G+++ A  LL 
Sbjct: 285 EVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLH 344

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R+G++ + IS      TYN ++ GLCK      A +L+ EM   G+ PD  TY +L+
Sbjct: 345 EMCRKGLQLN-IS------TYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLM 397

Query: 305 EG 306
           + 
Sbjct: 398 DA 399



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++R + PDS  + + + G+   G++ EA ++  +M + G  P  VTY  LIDGYC  G 
Sbjct: 241 MEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGE 300

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   ++MV+ G+ P   TY  L   L    ++  A+++L EM  KG+  +  TYN 
Sbjct: 301 MKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNT 360

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ GN  +A  L +EM   G+ P  +TYT+L+    K   M++A +L    L +G
Sbjct: 361 IVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRG 420

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V FN L++G C +G +E    LLK M    + P+  TYN++M   C +  +  + 
Sbjct: 421 LQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRIST 480

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  +G+ PD         TYN LI+G CK +    A  L +EMV K      ++Y
Sbjct: 481 EIYRGMCAQGVVPDSN-------TYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSY 533

Query: 301 FSLIEGIASVDKAAES 316
            +LI+G     K  E+
Sbjct: 534 NALIKGFFKRKKLLEA 549



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 170/329 (51%), Gaps = 29/329 (8%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN-LEMAFSF 67
           D + +  F   + + G L EA +  +++   G+  +A + N  +    +K + L M    
Sbjct: 38  DPHVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKV 97

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             E  + G+     +YN+L++ L    K+ EA  +L  M  KG +PD ++Y  +I+GYC 
Sbjct: 98  FSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCH 157

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  +K   L  EM  KG++P + TY+S+I +L K  +++E +++    + +G+ PD V+
Sbjct: 158 VGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVI 217

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LIDG C  GN + A+ L  EM+  ++ PD + ++ L+ G    GKV EA +L ++M 
Sbjct: 218 YTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMI 277

Query: 248 RRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQEGD 279
           ++G +PD +++                             P  +TY AL  GLCK+ E D
Sbjct: 278 KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELD 337

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIA 308
            A ELL EM  KG+  + +TY +++ G+ 
Sbjct: 338 TANELLHEMCRKGLQLNISTYNTIVNGLC 366



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 141/251 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  TY +   G+CK G L+ A+ +L +M   GL     TYNT+++G C  GN
Sbjct: 311 MVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGN 370

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM + G+ P   TY  L+       +MV+A ++L+EM ++G+ P  +T+N+
Sbjct: 371 ILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNV 430

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C  G  +    L   M+ KGI P   TY S++     +N M  + +++    A+G
Sbjct: 431 LMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQG 490

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N LI GHC   N++ A+ L KEM   + +    +YN L+ G  ++ K+ EAR
Sbjct: 491 VVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEAR 550

Query: 241 RLLDQMKRRGI 251
           +L ++M+R G+
Sbjct: 551 QLFEEMRREGL 561



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 121/210 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+ PD+ TY + +    K G + +A  +L +M + GL PT VT+N L++G C  G 
Sbjct: 381 MKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGK 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE        M+++GIMP A+TYN ++ +  +   M  + ++ + M  +G+VPDS TYNI
Sbjct: 441 LEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNI 500

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A+ LH EM+ K    T  +Y +LI    K+ +++EA QLFE    +G
Sbjct: 501 LIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREG 560

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++    ++N  +D +   GN+E    L  E
Sbjct: 561 LVASAEIYNLFVDMNYEEGNMETTLELCDE 590



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 130/289 (44%), Gaps = 49/289 (16%)

Query: 31  RMLEQMKENGLVPTA--VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           R++   K+ G  P    V +  L++     G L  A  F D+++  G+  +A + NL + 
Sbjct: 27  RLIYTYKDWGSDPHVFDVFFQVLVEA----GLLNEARKFFDKLLNYGVALSAGSCNLYLT 82

Query: 89  ELLMERKMVE-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
            L  +R M+     +  E  + G+  ++ +YNIL+N   R G  +               
Sbjct: 83  CLSSKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIR--------------- 127

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
                               EA  L      KG +PD+V +  +IDG+C  G +++   L
Sbjct: 128 --------------------EAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQL 167

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           +KEM    + P+  TY++++   C+ GKV E  ++L +M +RG+ PDH+        Y  
Sbjct: 168 VKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHV-------IYTT 220

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LI G CK      A +L  EM ++ I PD   + +LI G++   K  E+
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEA 269



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           +Y + + G  K  +L EA ++ E+M+  GLV +A  YN  +D    +GN+E      DE 
Sbjct: 532 SYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEA 591

Query: 72  VKQGIMPTASTYN 84
           +++ ++  A   N
Sbjct: 592 IEKCLLDKARNGN 604


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 181/305 (59%), Gaps = 7/305 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            MK +G++P+SY YGS +  +C+  +L EA     +M   G++P  V Y TLIDG+C +G+
Sbjct: 750  MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 809

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A  F  EM  + I P   TY  +I        MVEA  +  EM  KG+ PDS+T+  
Sbjct: 810  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LINGYC+ G+ K AF +H+ MI  G  P ++TYT+LI  L K+  +  A++L       G
Sbjct: 870  LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P+I  +N++++G C +GNIE A  L+ E +   ++ D VTY TLM   C+ G++++A+
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +L +M  +G++       PT +T+N L+ G C +   +  E+LL  M++KGI P+  T+
Sbjct: 990  EILKEMLGKGLQ-------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 1042

Query: 301  FSLIE 305
             SL++
Sbjct: 1043 NSLVK 1047



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 177/314 (56%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  +  +Y   +  +C+ GR++EA  +L  M+  G  P  ++Y+T+++GYC  G L+  
Sbjct: 684 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 743

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +   + M ++G+ P +  Y  +I  L    K+ EA++   EM  +GI+PD++ Y  LI+G
Sbjct: 744 WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDG 803

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+ + A     EM  + I P +LTYT++I    +   M+EA +LF     KG+ PD
Sbjct: 804 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 863

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V F  LI+G+C  G+++ AF +   M +    P+ VTY TL+ G C++G ++ A  LL 
Sbjct: 864 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 923

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M + G++P+         TYN+++ GLCK+   + A +L+ E  + G+  D  TY +L+
Sbjct: 924 EMWKIGLQPN-------IFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 976

Query: 305 EGIAS---VDKAAE 315
           +       +DKA E
Sbjct: 977 DAYCKSGEMDKAQE 990



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M SR + PD  TY + +SG C+ G + EA ++  +M   GL P +VT+  LI+GYC  G+
Sbjct: 820  MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGH 879

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ AF   + M++ G  P   TY  LI  L  E  +  A+++L EM + G+ P+  TYN 
Sbjct: 880  MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 939

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++NG C+ GN ++A  L  E    G+    +TYT+L+    K   M +A ++ +  L KG
Sbjct: 940  IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 999

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P IV FN L++G C +G +E    LL  M    + P+  T+N+L+   C +  ++ A 
Sbjct: 1000 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAAT 1059

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +   M  RG+ PD         TY  L++G CK +    A  L +EM  KG +   +TY
Sbjct: 1060 AIYKDMCSRGVGPDG-------KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTY 1112

Query: 301  FSLIEGIASVDKAAES 316
              LI+G     K  E+
Sbjct: 1113 SVLIKGFLKRKKFLEA 1128



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +G++PDS T+   ++G CK G +++A R+   M + G  P  VTY TLIDG C +G+
Sbjct: 855  MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 914

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L+ A     EM K G+ P   TYN +++ L     + EA  ++ E    G+  D++TY  
Sbjct: 915  LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT 974

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++ YC+ G   KA  +  EM+ KG+QPT++T+  L+        + + ++L    LAKG
Sbjct: 975  LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1034

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P+   FN+L+  +C   N++ A ++ K+M    V PD  TY  L+ G C+   ++EA 
Sbjct: 1035 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 1094

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L  +MK +G       F+ +  TY+ LI+G  K ++   A E+  +M  +G+  D   +
Sbjct: 1095 FLFQEMKGKG-------FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 1147



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 165/331 (49%), Gaps = 33/331 (9%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVT---YNTLIDGYCNKGNLEMAF 65
           D   +  F   +   G L EA R+ E+M   GLV +  +   Y T +   C K    +  
Sbjct: 617 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAI-I 675

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            FR E  + G+    ++YN++IH +    ++ EA  +L  M  KG  PD I+Y+ ++NGY
Sbjct: 676 VFR-EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 734

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR G   K + L + M  KG++P    Y S+I +L +  ++ EA++ F   + +G+LPD 
Sbjct: 735 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 794

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V++  LIDG C  G+I  A     EM    + PD +TY  ++ G C+ G + EA +L  +
Sbjct: 795 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 854

Query: 246 MKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQE 277
           M  +G++PD ++F                            +P  +TY  LI GLCK  +
Sbjct: 855 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 914

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            D A ELL EM   G+ P+  TY S++ G+ 
Sbjct: 915 LDSANELLHEMWKIGLQPNIFTYNSIVNGLC 945



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 139/259 (53%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G  P+  TY + + G+CKEG L+ A+ +L +M + GL P   TYN++++G C  GN
Sbjct: 890  MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 949

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +E A     E    G+     TY  L+       +M +A ++LKEM  KG+ P  +T+N+
Sbjct: 950  IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 1009

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+NG+C  G  +    L + M+ KGI P   T+ SL+     +N +  A  ++++  ++G
Sbjct: 1010 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 1069

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PD   +  L+ GHC   N++ A+ L +EM          TY+ L+ G  ++ K  EAR
Sbjct: 1070 VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAR 1129

Query: 241  RLLDQMKRRGIKPDHISFN 259
             + DQM+R G+  D   F+
Sbjct: 1130 EVFDQMRREGLAADKEIFD 1148



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 109/193 (56%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
             ++ G+  D+ TY + +   CK G +++A  +L++M   GL PT VT+N L++G+C  G 
Sbjct: 960  FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 1019

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            LE      + M+ +GI P A+T+N L+ +  +   +  A  + K+M  +G+ PD  TY  
Sbjct: 1020 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 1079

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+ G+C+  N K+A+ L  EM  KG   ++ TY+ LI    K+ + +EA ++F+    +G
Sbjct: 1080 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 1139

Query: 181  MLPDIVMFNALID 193
            +  D  +F+   D
Sbjct: 1140 LAADKEIFDFFSD 1152



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 8/153 (5%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNG-NIERAFSLLKEMDRMKVHPDEVTYNTL 226
           EA ++FE  L  G++  +   N  +     +      A  + +E   + V  +  +YN +
Sbjct: 636 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 695

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           +H  C+ G+++EA  LL  M+ +G  PD IS       Y+ ++ G C+  E D   +L+ 
Sbjct: 696 IHFVCQLGRIKEAHHLLLLMELKGYTPDVIS-------YSTVVNGYCRFGELDKVWKLIE 748

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
            M  KG+ P+   Y S+I  +  + K AE+  +
Sbjct: 749 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 781


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 181/305 (59%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G++P+SY YGS +  +C+  +L EA     +M   G++P  V Y TLIDG+C +G+
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  EM  + I P   TY  +I        MVEA  +  EM  KG+ PDS+T+  
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G+ K AF +H+ MI  G  P ++TYT+LI  L K+  +  A++L       G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I  +N++++G C +GNIE A  L+ E +   ++ D VTY TLM   C+ G++++A+
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L +M  +G++       PT +T+N L+ G C +   +  E+LL  M++KGI P+  T+
Sbjct: 547 EILKEMLGKGLQ-------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 599

Query: 301 FSLIE 305
            SL++
Sbjct: 600 NSLVK 604



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 177/314 (56%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  +  +Y   +  +C+ GR++EA  +L  M+  G  P  ++Y+T+++GYC  G L+  
Sbjct: 241 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 300

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +   + M ++G+ P +  Y  +I  L    K+ EA++   EM  +GI+PD++ Y  LI+G
Sbjct: 301 WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDG 360

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+ + A     EM  + I P +LTYT++I    +   M+EA +LF     KG+ PD
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V F  LI+G+C  G+++ AF +   M +    P+ VTY TL+ G C++G ++ A  LL 
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M + G++P+         TYN+++ GLCK+   + A +L+ E  + G+  D  TY +L+
Sbjct: 481 EMWKIGLQPN-------IFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533

Query: 305 EGIAS---VDKAAE 315
           +       +DKA E
Sbjct: 534 DAYCKSGEMDKAQE 547



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR + PD  TY + +SG C+ G + EA ++  +M   GL P +VT+  LI+GYC  G+
Sbjct: 377 MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGH 436

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   + M++ G  P   TY  LI  L  E  +  A+++L EM + G+ P+  TYN 
Sbjct: 437 MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ GN ++A  L  E    G+    +TYT+L+    K   M +A ++ +  L KG
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV FN L++G C +G +E    LL  M    + P+  T+N+L+   C +  ++ A 
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAAT 616

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  RG+ PD         TY  L++G CK +    A  L +EM  KG +   +TY
Sbjct: 617 AIYKDMCSRGVGPDG-------KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTY 669

Query: 301 FSLIEGIASVDKAAES 316
             LI+G     K  E+
Sbjct: 670 SVLIKGFLKRKKFLEA 685



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PDS T+   ++G CK G +++A R+   M + G  P  VTY TLIDG C +G+
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM K G+ P   TYN +++ L     + EA  ++ E    G+  D++TY  
Sbjct: 472 LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT 531

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ YC+ G   KA  +  EM+ KG+QPT++T+  L+        + + ++L    LAKG
Sbjct: 532 LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   FN+L+  +C   N++ A ++ K+M    V PD  TY  L+ G C+   ++EA 
Sbjct: 592 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 651

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +MK +G       F+ +  TY+ LI+G  K ++   A E+  +M  +G+  D   +
Sbjct: 652 FLFQEMKGKG-------FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 164/331 (49%), Gaps = 33/331 (9%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV---PTAVTYNTLIDGYCNKGNLEMAF 65
           D   +  F   +   G L EA R+ E+M   GLV    +   Y T +   C K    +  
Sbjct: 174 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAI-I 232

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            FR E  + G+    ++YN++IH +    ++ EA  +L  M  KG  PD I+Y+ ++NGY
Sbjct: 233 VFR-EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 291

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR G   K + L + M  KG++P    Y S+I +L +  ++ EA++ F   + +G+LPD 
Sbjct: 292 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V++  LIDG C  G+I  A     EM    + PD +TY  ++ G C+ G + EA +L  +
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 411

Query: 246 MKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQE 277
           M  +G++PD ++F                            +P  +TY  LI GLCK  +
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 471

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            D A ELL EM   G+ P+  TY S++ G+ 
Sbjct: 472 LDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 139/259 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY + + G+CKEG L+ A+ +L +M + GL P   TYN++++G C  GN
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     E    G+     TY  L+       +M +A ++LKEM  KG+ P  +T+N+
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 566

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L + M+ KGI P   T+ SL+     +N +  A  ++++  ++G
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  L+ GHC   N++ A+ L +EM          TY+ L+ G  ++ K  EAR
Sbjct: 627 VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAR 686

Query: 241 RLLDQMKRRGIKPDHISFN 259
            + DQM+R G+  D   F+
Sbjct: 687 EVFDQMRREGLAADKEIFD 705



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 109/193 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            ++ G+  D+ TY + +   CK G +++A  +L++M   GL PT VT+N L++G+C  G 
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE      + M+ +GI P A+T+N L+ +  +   +  A  + K+M  +G+ PD  TY  
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+C+  N K+A+ L  EM  KG   ++ TY+ LI    K+ + +EA ++F+    +G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696

Query: 181 MLPDIVMFNALID 193
           +  D  +F+   D
Sbjct: 697 LAADKEIFDFFSD 709



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 8/153 (5%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNG-NIERAFSLLKEMDRMKVHPDEVTYNTL 226
           EA ++FE  L  G++  +   N  +     +      A  + +E   + V  +  +YN +
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           +H  C+ G+++EA  LL  M+ +G  PD IS       Y+ ++ G C+  E D   +L+ 
Sbjct: 253 IHFVCQLGRIKEAHHLLLLMELKGYTPDVIS-------YSTVVNGYCRFGELDKVWKLIE 305

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
            M  KG+ P+   Y S+I  +  + K AE+  +
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 338


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 179/318 (56%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  + ++Y   + G C  G LE   R  E+M+ N  +P  VTYNT+I  YC    
Sbjct: 194 MIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKR 253

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF     M  +G+ P   TYN++I+ L    ++ E   +L EM  KG  PD +TYN 
Sbjct: 254 IDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNT 313

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ GN  +A  LH EM+  G+ P ++TYTSLI  + K   +  A + F+    +G
Sbjct: 314 LVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRG 373

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V + +LI+G    G ++ A+ +  EM R    P  VTYN L++G C  G++EEA 
Sbjct: 374 LRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAI 433

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M+ +G+ PD +S       Y+ +I G C+ QE D A ++  EMV KG++PD  TY
Sbjct: 434 GLLRGMEGKGLSPDVVS-------YSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITY 486

Query: 301 FSLIEGIASVDKAAESSN 318
            SLI+G+    +  E+ +
Sbjct: 487 SSLIQGLCEQRRLNEACD 504



 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 116/318 (36%), Positives = 171/318 (53%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+  TY   ++G+C+ GR+EE S +L +M   G  P  VTYNTL++GYC  GN
Sbjct: 264 MGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGN 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM++ G+ P   TY  LI+ +     +  A +   +M  +G+ P+ +TY  
Sbjct: 324 FHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTS 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+ + G   +A+ + DEMI  G  PT++TY +L+       RM EA  L      KG
Sbjct: 384 LINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKG 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ +I G C    ++RAF +  EM    V PD +TY++L+ G C Q ++ EA 
Sbjct: 444 LSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEAC 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L  +M  + + PD         TY +LI G CK  EGDL E   L  EM+ KG  PD  
Sbjct: 504 DLFQEMLNKSLLPDE-------FTYTSLINGYCK--EGDLNEALNLHDEMIKKGFLPDTV 554

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  LI G+    +  E+
Sbjct: 555 TYNVLINGLNKQARTREA 572



 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 177/314 (56%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY S ++ MCK G L  A    +QM   GL P  VTY +LI+G+  KG 
Sbjct: 334 MLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGF 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+   DEM++ G  PT  TYN L++   +  +M EA  +L+ M  KG+ PD ++Y+ 
Sbjct: 394 MDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+CR     +AF ++ EM+ KG+ P  +TY+SLI  L +Q R+ EA  LF+  L K 
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD   + +LI+G+C  G++  A +L  EM +    PD VTYN L++G  +Q +  EA+
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAK 573

Query: 241 RLL-----DQMKRRGIKPDHISFNPTRLTYN---ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL     D+    GI  D +  + + + +    ALI+G C     + A+++   M+ + 
Sbjct: 574 RLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRN 633

Query: 293 ITPDDNTYFSLIEG 306
             P++  Y  +I G
Sbjct: 634 QKPNEAVYNVIIHG 647



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 160/345 (46%), Gaps = 57/345 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY + ++G C  GR+EEA  +L  M+  GL P  V+Y+T+I G+C    
Sbjct: 404 MIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQE 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF    EMV++G+ P A TY+ LI  L  +R++ EA D+ +EM  K ++PD  TY  
Sbjct: 464 LDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTS 523

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR--------------- 165
           LINGYC+ G+  +A +LHDEMI KG  P  +TY  LI  L+KQ R               
Sbjct: 524 LINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDE 583

Query: 166 -----------------------------------MIEADQLFENFLAKGMLPDIVMFNA 190
                                              M EADQ+FE+ + +   P+  ++N 
Sbjct: 584 SIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNV 643

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +I GHC +GN+ +A  L KEM      P  VT   L+     +G  E+   ++  + R  
Sbjct: 644 IIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILRSC 703

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
              D        L+  AL+Q   K    D    LL EM   G  P
Sbjct: 704 KLSD------AELS-KALVQINHKEGNIDAVFNLLTEMAKDGFLP 741


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 6/312 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  T+G  + G+CK   +  A + L  M   G+VP    YN LIDGYC  GN
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S   E+ K  I+P   TY++LI  L    +M EAD +L+EM +KG +P+++TYN 
Sbjct: 349 LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN +KA  +  +M  KGI+P ++T+++LI    K  +M  A  L+   + KG
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V + ALIDGH  +GN + AF L KEM    +HP+  T + L+ G C+ G++ +A 
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAI 528

Query: 241 RLL------DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           +L       D    +  + D    +P  + Y ALIQGLC +     A +   +M   G+ 
Sbjct: 529 KLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLR 588

Query: 295 PDDNTYFSLIEG 306
           PD  T   +I+G
Sbjct: 589 PDVFTCIVIIQG 600



 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 173/307 (56%), Gaps = 7/307 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P        + G+ K+GR +   ++   M   G  P  VTY TLIDG C +G+   AF
Sbjct: 154 VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAF 213

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM+++ I PT   Y +LI  L  E ++ EA+ M + M   G++P+  TYN +++GY
Sbjct: 214 RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+  + KKA  L+ EM+  G+ P ++T+  LI  L K + M+ A +   +  + G++P+I
Sbjct: 274 CKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNI 333

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            ++N LIDG+C  GN+  A SL  E+++ ++ PD  TY+ L+ G C   ++EEA  LL +
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MK++G       F P  +TYN LI G CK    + A E+  +M  KGI P+  T+ +LI+
Sbjct: 394 MKKKG-------FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 306 GIASVDK 312
           G     K
Sbjct: 447 GYCKAGK 453



 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P    Y   + G+C E R+ EA  M   M+ +G++P   TYNT++DGYC   +
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM+  G++P   T+ +LI  L    +MV A   L +M   G+VP+   YN 
Sbjct: 279 VKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN  +A SLH E+    I P + TY+ LI  L   +RM EAD L +    KG
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+ V +N LIDG+C  GN+E+A  +  +M    + P+ +T++TL+ G C+ GK+E A 
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G+ PD ++       Y ALI G  K+     A  L +EM   G+ P+  T 
Sbjct: 459 GLYTEMVIKGLLPDVVA-------YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 301 FSLIEGIA 308
             LI+G+ 
Sbjct: 512 SCLIDGLC 519



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 141/262 (53%), Gaps = 13/262 (4%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + PD +TY   + G+C   R+EEA  +L++MK+ G +P AVTYNTLIDGYC +GN+E A 
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +M ++GI P   T++ LI       KM  A  +  EM  KG++PD + Y  LI+G+
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF------------ 173
            + GN K+AF LH EM   G+ P + T + LI  L K  R+ +A +LF            
Sbjct: 484 FKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSK 543

Query: 174 ENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
            N L + +  P+ VM+ ALI G CT+G I +A     +M    + PD  T   ++ G  R
Sbjct: 544 TNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFR 603

Query: 233 QGKVEEARRLLDQMKRRGIKPD 254
              + +   L   + + GI P+
Sbjct: 604 AMHLRDVMMLQADILKMGIIPN 625



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 149/303 (49%), Gaps = 33/303 (10%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           +L +++ +   P    +  LI  +   G +E A        K  ++P     N+++  L+
Sbjct: 115 VLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWV---YYKMDVLPAMQACNMVLDGLV 169

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            + +      +  +M  +G  P+ +TY  LI+G CR G+  KAF L DEMI K I PT++
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            YT LI  L  ++R+ EA+ +F      GMLP++  +N ++DG+C   ++++A  L +EM
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM 289

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------ 259
               + P+ VT+  L+ G C+  ++  AR+ L  M   G+ P+   +N            
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 260 ----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                           P   TY+ LI+GLC     + A+ LL+EM  KG  P+  TY +L
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTL 409

Query: 304 IEG 306
           I+G
Sbjct: 410 IDG 412



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 43/80 (53%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            P+   Y + + G+C +GR+ +AS+    M+ +GL P   T   +I G+    +L     
Sbjct: 553 SPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMM 612

Query: 67  FRDEMVKQGIMPTASTYNLL 86
            + +++K GI+P +S Y +L
Sbjct: 613 LQADILKMGIIPNSSVYRVL 632



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +F  LI      G +E A  +  +MD   V P     N ++ G  ++G+ +   ++   M
Sbjct: 128 VFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             RG  P+ +       TY  LI G C+  +   A  L  EM+ K I P    Y  LI G
Sbjct: 185 VARGASPNVV-------TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRG 237

Query: 307 IASVDKAAESSN 318
           +    + +E+ +
Sbjct: 238 LCGESRISEAES 249


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 176/312 (56%), Gaps = 6/312 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  T+G  + G+CK   +  A + L  M   G+VP    YN LIDGYC  GN
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S   E+ K  I+P   TY++LI  L    +M EAD +L+EM +KG +P+++TYN 
Sbjct: 349 LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN +KA  +  +M  KGI+P ++T+++LI    K  +M  A  L+   + KG
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V + ALIDGH  +GN + AF L KEM    +HP+  T + L+ G C+ G++ +A 
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAI 528

Query: 241 RLL------DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           +L       D    +  + D    +P  + Y ALIQGLC +     A +   +M   G+ 
Sbjct: 529 KLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLR 588

Query: 295 PDDNTYFSLIEG 306
           PD  T   +I+G
Sbjct: 589 PDVFTCIVIIQG 600



 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 173/307 (56%), Gaps = 7/307 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P        + G+ K+GR +   ++   M   G  P  VTY TLIDG C +G+   AF
Sbjct: 154 VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAF 213

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM+++ I PT   Y +LI  L  E ++ EA+ M + M   G++P+  TYN +++GY
Sbjct: 214 RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+  + KKA  L+ EM+  G+ P ++T+  LI  L K + M+ A +   +  + G++P+I
Sbjct: 274 CKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNI 333

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            ++N LIDG+C  GN+  A SL  E+++ ++ PD  TY+ L+ G C   ++EEA  LL +
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MK++G       F P  +TYN LI G CK    + A E+  +M  KGI P+  T+ +LI+
Sbjct: 394 MKKKG-------FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 306 GIASVDK 312
           G     K
Sbjct: 447 GYCKAGK 453



 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P    Y   + G+C E R+ EA  M   M+ +G++P   TYNT++DGYC   +
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM+  G++P   T+ +LI  L    +MV A   L +M   G+VP+   YN 
Sbjct: 279 VKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN  +A SLH E+    I P + TY+ LI  L   +RM EAD L +    KG
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+ V +N LIDG+C  GN+E+A  +  +M    + P+ +T++TL+ G C+ GK+E A 
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G+ PD ++       Y ALI G  K+     A  L +EM   G+ P+  T 
Sbjct: 459 GLYTEMVIKGLLPDVVA-------YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 301 FSLIEGIA 308
             LI+G+ 
Sbjct: 512 SCLIDGLC 519



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 138/304 (45%), Gaps = 53/304 (17%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + PD +TY   + G+C   R+EEA  +L++MK+ G +P AVTYNTLIDGYC +GN+E A 
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +M ++GI P   T++ LI       KM  A  +  EM  KG++PD + Y  LI+G+
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLT--------------------------------- 152
            + GN K+AF LH EM   G+ P + T                                 
Sbjct: 484 FKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSK 543

Query: 153 ---------------YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
                          YT+LI  L    R+ +A + F +    G+ PD+     +I GH  
Sbjct: 544 TNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFR 603

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP-DHI 256
             ++     L  ++ +M + P+   Y  L  G    G ++ A     +    G++P D +
Sbjct: 604 AMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGE----GVQPLDRV 659

Query: 257 SFNP 260
           +  P
Sbjct: 660 NSEP 663



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 147/287 (51%), Gaps = 16/287 (5%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           +L +++ +   P    +  LI  +   G +E A        K  ++P     N+++  L+
Sbjct: 115 VLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWV---YYKMDVLPAMQACNMVLDGLV 169

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            + +      +  +M  +G  P+ +TY  LI+G CR G+  KAF L DEMI K I PT++
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            YT LI  L  ++R+ EA+ +F      GMLP++  +N ++DG+C   ++++A  L  EM
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEM 289

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
               + P+ VT+  L+ G C+  ++  AR+ L  M   G+ P+          YN LI G
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN-------IFVYNCLIDG 342

Query: 272 LCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            CK   G+L+E   L  E+    I PD  TY  LI+G+  VD+  E+
Sbjct: 343 YCK--AGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/343 (19%), Positives = 122/343 (35%), Gaps = 79/343 (23%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++PD +T    + G  +   L +   +   + + G++P +  Y  L  GY   G 
Sbjct: 582 MRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGY 641

Query: 61  LEMAFSFRDEMVK---------QGIMPTASTYNLLI------------------------ 87
           L+ A SF  E V+          G     S + L +                        
Sbjct: 642 LKSALSFCGEGVQPLDRVNSEPWGSYTIRSRFQLCVVTEKKECHSSYLTAFGIHSFVLLW 701

Query: 88  -----------HELLMERKMV---------EADDMLKEMGEKGIVPDSITYNILINGYCR 127
                      HE+L +   +         +A  + ++M      PD +T  + ++    
Sbjct: 702 YFHTILKPPSPHEILKKVPFIGQKGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSACAD 761

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G       +H  + H+G+   +    SLI + SK   +  A +LF+    K    D+  
Sbjct: 762 LGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRLFDGTQKK----DVTT 817

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMK----------------VHPDEVTYNTLMHGRC 231
           + ++I GH  +G  E A  L  EM                    V P++VT+  ++    
Sbjct: 818 WTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACS 877

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
             G VEE ++    MK      +  S  P    +  ++  LC+
Sbjct: 878 HAGLVEEGKQHFRSMK------EDYSLRPRISHFGCMVDLLCR 914



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +F  LI      G +E A  +  +MD   V P     N ++ G  ++G+ +   ++   M
Sbjct: 128 VFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             RG  P+ +       TY  LI G C+  +   A  L  EM+ K I P    Y  LI G
Sbjct: 185 VARGASPNVV-------TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRG 237

Query: 307 IASVDKAAESSN 318
           +    + +E+ +
Sbjct: 238 LCGESRISEAES 249



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 96/272 (35%), Gaps = 58/272 (21%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           R  +A ++  QM+ +   P  VT    +    + G L+M       +  +G+       N
Sbjct: 729 RPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNN 788

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIV---------PDSITYNILINGYCRCGNAKKAF 135
            LI             +M  + GE G            D  T+  +I G+   G A++A 
Sbjct: 789 SLI-------------NMYSKCGEIGTARRLFDGTQKKDVTTWTSMIVGHALHGQAEEAL 835

Query: 136 SLHDEMIHKG----------------IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L  EM                    + P  +T+  ++   S    + E  Q F +    
Sbjct: 836 QLFTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKED 895

Query: 180 GML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK--- 235
             L P I  F  ++D  C  G +  A+  +    +M V P+ V + TL+     QG    
Sbjct: 896 YSLRPRISHFGCMVDLLCRAGLLTEAYEFIL---KMPVRPNAVVWRTLLGACSLQGDSNG 952

Query: 236 --------VEEARRLLDQMKRRGIKPDHISFN 259
                     EARR L ++     +P H+  N
Sbjct: 953 NGNSNIKIXSEARRQLLEL-----EPSHVGDN 979


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 190/344 (55%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
             SRG++P   TY + + G+CK G+ + A  +L +M + GL P A TYNTL+   C + N
Sbjct: 318 FSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDN 377

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    DEM ++G++P   +++ LI  L     + +A    +EM   GIVPD++ Y I
Sbjct: 378 ILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTI 437

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+CR G    A  + DEM+ +G    ++TY + +  L K+    +AD LF   + +G
Sbjct: 438 LIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD   F  LI G+C +GN+++A +L + M R  + PD+VTYNTL+ G C+ G++  A+
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAK 557

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L D M R+ I PDHIS+                             P  +T N LI+G 
Sbjct: 558 ELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGY 617

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
           C++ +   A E L +M+S GI PD  +Y +LI+G    A+++KA
Sbjct: 618 CRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKA 661



 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 177/344 (51%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PD  ++ S +  + + G L +A     +M+ +G+VP  V Y  LIDG+C  G 
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGA 447

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A   RDEM+ +G      TYN  ++ L  ++   +AD +  EM E+G+VPD  T+  
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC+ GN  KA +L + M+   ++P  +TY +LI    K   M  A +L+++ + K 
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD 567

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +  +++G C++G +  A +L  +M    + P+ VT NTL+ G CR G + +A 
Sbjct: 568 IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAY 627

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
             L +M   GI PD  S+N                               +TYN ++ G 
Sbjct: 628 EYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGF 687

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C   +   AE++LR+M+  GI PD  TY SLI G  S D   E+
Sbjct: 688 CAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEA 731



 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 167/297 (56%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG   D  TY +F++G+CK+    +A  +  +M E G+VP   T+ TLI GYC  GN
Sbjct: 458 MLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGN 517

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  + MV+  + P   TYN LI       +M  A ++  +M  K I+PD I+Y  
Sbjct: 518 MDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGT 577

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG+C  G   +A +L D+M+ KGI+P ++T  +LI    +   M +A +     ++ G
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N LIDG+    N+E+AF L+ EM++  +  + +TYN +++G C +GK++EA 
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           ++L +M   GI PD         TY++LI G         A     EM+ +G+ PDD
Sbjct: 698 QVLRKMIEIGINPDGA-------TYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 161/316 (50%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +GV          + G+ + G ++ A  +  ++   G+     T N +++  C    
Sbjct: 213 LRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRK 272

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E    F  +M  +G+     TYN LI+    E  + EA  +L     +G+ P  +TYN 
Sbjct: 273 FENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNA 332

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+ G   +A  +  EM+  G+ P   TY +L+  + +++ ++EA ++F+    +G
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG 392

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V F++LI     NG++ +A    +EM+R  + PD V Y  L+ G CR G + +A 
Sbjct: 393 VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDAL 452

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D+M  RG   D +       TYN  + GLCK +    A+ L  EMV +G+ PD  T+
Sbjct: 453 KMRDEMLARGCFMDVV-------TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTF 505

Query: 301 FSLIEGI---ASVDKA 313
            +LI G     ++DKA
Sbjct: 506 TTLIRGYCKDGNMDKA 521



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 42/234 (17%)

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y+LL+   +  +K+ E  +  + +  KG+       N L+ G  R G    A+ ++ E++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             GI+  + T   ++  L K       D+ FEN          VMF              
Sbjct: 250 RGGIELNVYTLNIMVNALCK-------DRKFEN----------VMF-------------- 278

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
                L +M+   V  D VTYNTL++  CR+G VEEA +LL+    RG++P         
Sbjct: 279 ----FLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPG-------L 327

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LTYNA++ GLCK  + D A+++L EM+  G+TP+  TY +L+  I   D   E+
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEA 381


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 190/344 (55%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
             SRG++P   TY + + G+CK G+ + A  +L +M + GL P A TYNTL+   C + N
Sbjct: 318 FSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDN 377

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    DEM ++G++P   +++ LI  L     + +A    +EM   GIVPD++ Y I
Sbjct: 378 ILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTI 437

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+CR G    A  + DEM+ +G    ++TY + +  L K+    +AD LF   + +G
Sbjct: 438 LIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD   F  LI G+C +GN+++A +L + M R  + PD+VTYNTL+ G C+ G++  A+
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAK 557

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L D M R+ I PDHIS+                             P  +T N LI+G 
Sbjct: 558 ELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGY 617

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
           C++ +   A E L +M+S GI PD  +Y +LI+G    A+++KA
Sbjct: 618 CRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKA 661



 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 177/344 (51%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PD  ++ S +  + + G L +A     +M+ +G+VP  V Y  LIDG+C  G 
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGA 447

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A   RDEM+ +G      TYN  ++ L  ++   +AD +  EM E+G+VPD  T+  
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC+ GN  KA +L + M+   ++P  +TY +LI    K   M  A +L+++ + K 
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD 567

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +  +++G C++G +  A +L  +M    + P+ VT NTL+ G CR G + +A 
Sbjct: 568 IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAY 627

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
             L +M   GI PD  S+N                               +TYN ++ G 
Sbjct: 628 EYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGF 687

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C   +   AE++LR+M+  GI PD  TY SLI G  S D   E+
Sbjct: 688 CAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEA 731



 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 167/297 (56%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG   D  TY +F++G+CK+    +A  +  +M E G+VP   T+ TLI GYC  GN
Sbjct: 458 MLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGN 517

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  + MV+  + P   TYN LI       +M  A ++  +M  K I+PD I+Y  
Sbjct: 518 MDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGT 577

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG+C  G   +A +L D+M+ KGI+P ++T  +LI    +   M +A +     ++ G
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N LIDG+    N+E+AF L+ EM++  +  + +TYN +++G C +GK++EA 
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           ++L +M   GI PD         TY++LI G         A     EM+ +G+ PDD
Sbjct: 698 QVLRKMIEIGINPDGA-------TYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 161/316 (50%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +GV          + G+ + G ++ A  +  ++   G+     T N +++  C    
Sbjct: 213 LRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRK 272

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E    F  +M  +G+     TYN LI+    E  + EA  +L     +G+ P  +TYN 
Sbjct: 273 FENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNA 332

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+ G   +A  +  EM+  G+ P   TY +L+  + +++ ++EA ++F+    +G
Sbjct: 333 ILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRG 392

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V F++LI     NG++ +A    +EM+R  + PD V Y  L+ G CR G + +A 
Sbjct: 393 VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDAL 452

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D+M  RG   D +       TYN  + GLCK +    A+ L  EMV +G+ PD  T+
Sbjct: 453 KMRDEMLARGCFMDVV-------TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTF 505

Query: 301 FSLIEGI---ASVDKA 313
            +LI G     ++DKA
Sbjct: 506 TTLIRGYCKDGNMDKA 521



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 42/234 (17%)

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y+LL+   +  +K+ E  +  + +  KG+       N L+ G  R G    A+ ++ E++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             GI+  + T   ++  L K       D+ FEN          VMF              
Sbjct: 250 RGGIELNVYTLNIMVNALCK-------DRKFEN----------VMF-------------- 278

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
                L +M+   V  D VTYNTL++  CR+G VEEA +LL+    RG++P         
Sbjct: 279 ----FLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPG-------L 327

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LTYNA++ GLCK  + D A+++L EM+  G+TP+  TY +L+  I   D   E+
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEA 381


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 123/319 (38%), Positives = 176/319 (55%), Gaps = 4/319 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K  GV P  + Y + ++ MCK+G+L+EA  +   M   GL P  VTY+ LID +C +G 
Sbjct: 346 VKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGK 405

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A  F  +M + GI  T   Y+ LI       K+  A  +  EM   G+ P+ + Y  
Sbjct: 406 LDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTS 465

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    AF L+ EM  KGI P   T+T+LI  L   NRM EA++LF   +   
Sbjct: 466 LISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWN 525

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V +N LI+GHC  GN  RAF LL EM    + PD  TY  L+ G C  G+V EAR
Sbjct: 526 VIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAR 585

Query: 241 RLLDQMKRRGIKPDHI-SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             ++ ++    K + I    P  +TY ALI GLCK    D AE L REM++    P+ NT
Sbjct: 586 EFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNT 645

Query: 300 YFSLIEGIAS---VDKAAE 315
           Y   ++ + S   ++KA +
Sbjct: 646 YACFLDYLTSEGNIEKAIQ 664



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +G++ D  TY + V G+CK    E    M+ +M E G VP+    + L+DG   KGN
Sbjct: 276 LSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGN 335

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   +++ K G+ P+   YN LI+ +  + K+ EA+ +   MG KG+ P+ +TY+I
Sbjct: 336 IGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSI 395

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ G    A     +M   GI+ T+  Y+SLI    K  ++  A  LF+  +A G
Sbjct: 396 LIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG 455

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V++ +LI G+C  G +  AF L  EM    + P+  T+  L+ G C   ++ EA 
Sbjct: 456 LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M    + P+ +       TYN LI+G CK      A ELL EMV KG+ PD  TY
Sbjct: 516 KLFGEMVEWNVIPNEV-------TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTY 568

Query: 301 FSLIEGIASVDKAAES 316
             LI G+ S  + +E+
Sbjct: 569 RPLISGLCSTGRVSEA 584



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 181/388 (46%), Gaps = 73/388 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++   Y Y S +SG CK G+L  A  + ++M  NGL P  V Y +LI GYC +G 
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF    EM  +GI P   T+  LI  L    +M EA+ +  EM E  ++P+ +TYN+
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           LI G+C+ GN  +AF L DEM+ KG+ P   TY  LI  L    R+ EA +   +   + 
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 180 -------GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE------------ 220
                  G LP++V + ALI+G C  G +++A  L +EM      P++            
Sbjct: 596 QKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTS 655

Query: 221 ----------------------VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
                                 VTYN L+ G C+ G+++EA  +L  M   GI PD IS+
Sbjct: 656 EGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISY 715

Query: 259 ----------------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
                                       NP  + YN LI G C   E   A EL  +M+ 
Sbjct: 716 STIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR 775

Query: 291 KGITPDDNTYFSLIEG---IASVDKAAE 315
           +G+ P+  TY SLI G   ++SV   A+
Sbjct: 776 RGVKPNRATYNSLIHGTCLMSSVSSTAD 803



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 153/345 (44%), Gaps = 28/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   T    ++G+ +  +   A  + +++  +GL P    Y  ++   C   +
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M   G   + +TYN+ I  L   +++ EA ++   +  KG+  D  TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+    +    + +EMI  G  P+    ++L+  L K+  +  A  L       G
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFG 350

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P + ++NALI+  C +G ++ A SL   M    + P++VTY+ L+   C++GK++ A 
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L +M   GIK     ++                            P  + Y +LI G 
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           CK  E   A  L  EM  KGI+P+  T+ +LI G+   ++ AE++
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 117/275 (42%), Gaps = 29/275 (10%)

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           SF D   K     T   ++LLI   +  R+ ++   +++ M + GI+P   T + ++NG 
Sbjct: 132 SFLDSYRKCNFSTTLG-FDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGL 190

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            R    + A  L DE++  G++P +  YT+++  L +    I A ++     + G    +
Sbjct: 191 IRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSV 250

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +N  I G C N  +  A  +   +    +  D  TY TL+ G C+  + E    ++++
Sbjct: 251 ATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNE 310

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
           M   G  P   + +                            P+   YNALI  +CK+ +
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            D AE L   M  KG+ P+D TY  LI+      K
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGK 405


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 190/344 (55%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P  +TY + ++G+CK+GR   A  +L +M   GL P   TYNTL+   C + N
Sbjct: 179 MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDN 238

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM++QG++P   +++ LI      R + +A    ++M + G+VPD++ Y +
Sbjct: 239 FSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYCR GN  +A  + DEM+ +G    ++ Y +++  L K+  + +AD+LF+  + +G
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD   F  LI GHC +GN+ +A SL   M +  + PD V YNTL+ G C+ G++E+A 
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 418

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            L D M  R I P+HI++                             PT +T N +I+G 
Sbjct: 419 ELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGY 478

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           C++ +   A+E L  M++KG+ PD  +Y +LI G     ++DKA
Sbjct: 479 CRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKA 522



 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 180/344 (52%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD  ++ S ++   +   L++A      MK+ GLVP  V Y  L+ GYC  GN
Sbjct: 249 MLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGN 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEM++QG +     YN +++ L  E+ + +AD +  EM E+G +PD  T+  
Sbjct: 309 MLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTT 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN  KA SL   M  + I+P ++ Y +LI    K   M +A +L++  +++ 
Sbjct: 369 LIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRK 428

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  LI+ +C+ G++  AF L   M    + P  VT NT++ G CR G   +A 
Sbjct: 429 IFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKAD 488

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L +M  +G+ PDHIS+N                            P  +TYN ++ G 
Sbjct: 489 EFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGF 548

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C+      AE +LR+M+ KGI PD +TY +LI G  + D   E+
Sbjct: 549 CRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEA 592



 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 164/297 (55%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   D   Y + ++G+CKE  L +A ++ ++M E G +P   T+ TLI G+C  GN
Sbjct: 319 MLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGN 378

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    M ++ I P    YN LI       +M +A ++   M  + I P+ ITY I
Sbjct: 379 MTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGI 438

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC  G+  +AF L D MI KGI+PT++T  ++I    +     +AD+     +AKG
Sbjct: 439 LINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKG 498

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N LI+G     N+++AF  + +M++  + PD +TYN +M+G CRQG+++EA 
Sbjct: 499 VAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAE 558

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            +L +M  +GI PD       R TY ALI G       + A     EM+ +G  PDD
Sbjct: 559 LVLRKMIEKGINPD-------RSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDD 608



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 175/340 (51%), Gaps = 28/340 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ + YT    V+ +CK+G+ ++    L +M+ NG+    VTYNTLI  YC +G LE A
Sbjct: 113 GIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEA 172

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   + M  +G+ P+  TYN +I+ L  + +   A  +L EM   G+ PD+ TYN L+  
Sbjct: 173 FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVE 232

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR  N  +A  +  EM+ +G+ P +++++SLI V S+   + +A   F +    G++PD
Sbjct: 233 SCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPD 292

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V++  L+ G+C NGN+  A  +  EM       D + YNT+++G C++  + +A +L D
Sbjct: 293 NVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFD 352

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M  RG  PD  +F                             P  + YN LI G CK  
Sbjct: 353 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 412

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E + A EL   M+S+ I P+  TY  LI    SV   +E+
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEA 452



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 139/256 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD YT+ + + G C++G + +A  +   M +  + P  V YNTLIDG+C  G 
Sbjct: 354 MVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D M+ + I P   TY +LI+       + EA  +   M EKGI P  +T N 
Sbjct: 414 MEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNT 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYCR G++ KA      MI KG+ P  ++Y +LI    +++ M +A         +G
Sbjct: 474 VIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEG 533

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPDI+ +N +++G C  G ++ A  +L++M    ++PD  TY  L++G   Q  + EA 
Sbjct: 534 LLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAF 593

Query: 241 RLLDQMKRRGIKPDHI 256
           R  D+M +RG  PD +
Sbjct: 594 RFHDEMLQRGFAPDDV 609



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S+G         S + G+ K   +E A  +  ++  +G+     T N +++  C  G 
Sbjct: 74  LRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGK 133

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   SF  EM   GI     TYN LI     E  + EA +++  M +KG+ P   TYN 
Sbjct: 134 FDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNA 193

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A  +  EM++ G+ P   TY +L+    +++   EA ++F   L +G
Sbjct: 194 IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG 253

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F++LI     N ++++A    ++M +  + PD V Y  LMHG CR G + EA 
Sbjct: 254 VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D+M  +G   D I+       YN ++ GLCK +    A++L  EMV +G  PD  T+
Sbjct: 314 KIRDEMLEQGCVLDVIA-------YNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTF 366

Query: 301 FSLIEG 306
            +LI G
Sbjct: 367 TTLIHG 372



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
            ++LLI   +  RK+ E  +  + +  KG +      N L+ G  +    + A+ +H E+
Sbjct: 50  VFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREV 109

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +  GI+  + T   ++  L K  +  +           G+  D+V +N LI  +C  G +
Sbjct: 110 VRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLL 169

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           E AF ++  M    + P   TYN +++G C++G+   A+ +L +M   G+ PD       
Sbjct: 170 EEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTT----- 224

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
             TYN L+   C+      A+E+  EM+ +G+ PD  ++ SLI
Sbjct: 225 --TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLI 265


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 189/344 (54%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RGV PD  ++   +      G+++ A+  L +MK  GLVP  V Y  +I G+C  G+
Sbjct: 288 MQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEMV  G +P   TYN L++ L  + ++++A+++L EM E+G+ PD  T+  
Sbjct: 348 MSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTT 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR GN +KA  L D ++H+ ++P ++ Y SLI  + ++  + +A++L+++  A+ 
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V ++ LID HC  G +E AF  L EM      P+ +TYN+++ G CR G V++ +
Sbjct: 468 IFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQ 527

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           + L +M +  I PD I+FN                            P  +TYN +I G 
Sbjct: 528 QFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGF 587

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +    + A  + ++M + GI PD  TY SLI G  +   + E+
Sbjct: 588 SEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEA 631



 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 173/306 (56%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++P   T+ S + G+CK  R ++A  +   M +  + P   ++N LI G+C  G 
Sbjct: 218 MANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGE 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F  EM ++G+ P   +++ LI       KM  A   L+EM   G+VPD + Y +
Sbjct: 278 VEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTM 337

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+CR G+  +A  + DEM+  G  P ++TY +L+  L KQ+R+++A++L      +G
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERG 397

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  F  LI G+C +GN E+A  L   +   ++ PD V YN+L+ G CR+G + +A 
Sbjct: 398 VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKAN 457

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M  R I P+H+       TY+ LI   C+  + + A   L EMVSKG  P+  TY
Sbjct: 458 ELWDDMHAREIFPNHV-------TYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTY 510

Query: 301 FSLIEG 306
            S+I+G
Sbjct: 511 NSIIKG 516



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/297 (35%), Positives = 163/297 (54%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY + ++G+CK+ RL +A  +L +MKE G+ P   T+ TLI GYC  GN
Sbjct: 358 MVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGN 417

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    D ++ Q + P    YN LI  +  +  + +A+++  +M  + I P+ +TY+I
Sbjct: 418 FEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSI 477

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C  G  ++AF   DEM+ KG  P ++TY S+I    +   + +  Q  +  +   
Sbjct: 478 LIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDN 537

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ FN LI G+    N+  AF++   M++  V PD VTYN +++G   QG +EEA 
Sbjct: 538 ILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAG 597

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           R+  +M   GI+PD       R TY +LI G         A +L  EM+ +G  PDD
Sbjct: 598 RVFKKMGASGIEPD-------RYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPDD 647



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 163/299 (54%), Gaps = 7/299 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++YT    V   CK    ++A  ++ +M++  + P  VT+N LID     G+++ A +  
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D M  +G+ P   T+N ++  L   R+  +A ++ + M +  + PD  ++NILI G+CR 
Sbjct: 216 DSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRV 275

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  ++A   + EM  +G+ P +++++ LI + S + +M  A          G++PD V++
Sbjct: 276 GEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIY 335

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             +I G C  G++  A  +  EM  +   PD VTYNTL++G C+Q ++ +A  LL++MK 
Sbjct: 336 TMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKE 395

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           RG+ PD         T+  LI G C++   + A +L   ++ + + PD   Y SLI+G+
Sbjct: 396 RGVTPD-------LCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGM 447



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 101/204 (49%), Gaps = 7/204 (3%)

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           P    +++LI  Y +    ++AF     ++   +        +L+  LS+      A++ 
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEA 144

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           +   L+     +    N ++  +C +   ++A +++ EM++  V PD VT+N L+  R R
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFR 204

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            G V+ A  L+D M  +G+KP  +       T+N++++GLCK++  D A+E+ R M    
Sbjct: 205 AGDVDAAIALVDSMANKGLKPGIV-------TFNSVLKGLCKHRRFDKAKEVFRAMDQCS 257

Query: 293 ITPDDNTYFSLIEGIASVDKAAES 316
           + PD  ++  LI G   V +  E+
Sbjct: 258 VAPDVRSFNILIGGFCRVGEVEEA 281



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 7/227 (3%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P    ++LLI      RK  EA +  + + +  +   +   N L+    R G    A   
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEA 144

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
           +  ++    +    T   ++    K     +AD +      + + PD+V  N LID    
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFR 204

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G+++ A +L+  M    + P  VT+N+++ G C+  + ++A+ +   M +  + PD  S
Sbjct: 205 AGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRS 264

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           F       N LI G C+  E + A +  +EM  +G+TPD  ++  LI
Sbjct: 265 F-------NILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLI 304


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+ +TY   + G C  G L+ A R  ++M++ G +P  VTYNTLIDGYC    ++  F
Sbjct: 201 VSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGF 260

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M  +G+ P   +YN++I+ L  E +M E   +L EM ++G   D +TYN LI GY
Sbjct: 261 ELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGY 320

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ GN  +A  +H EM+  G+ P+++TYTSLI  + K   M  A +  +    +G+ P+ 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNE 380

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +  L+DG    G +  A+ +LKEM      P  VTYN L++G C  GK+ +A  +L+ 
Sbjct: 381 RTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLED 440

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MK +G+ PD +S       Y+ ++ G C++ + D A  + R+MV+KGI PD  TY SLI+
Sbjct: 441 MKEKGLTPDVVS-------YSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQ 493

Query: 306 GIASVDKAAESSN 318
           G     +  E+ +
Sbjct: 494 GFCEQRRTKEACD 506



 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 179/318 (56%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P+  +Y   ++G+C+EGR++E S +L +M + G     VTYNTLI GYC +GN
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGN 325

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM++ G+ P+  TY  LIH +     M  A + L +M  +G+ P+  TY  
Sbjct: 326 FHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTT 385

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ + G   +A+ +  EMI  G  P+++TY +LI       +M++A  + E+   KG
Sbjct: 386 LVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKG 445

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ ++ G C + +++ A  + ++M    + PD +TY++L+ G C Q + +EA 
Sbjct: 446 LTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            L D+M R G+ PD         TY ALI   C   EGDL  A +L  EMV KG+ PD  
Sbjct: 506 DLFDEMLRVGLPPD-------EFTYTALINAYC--MEGDLQKAIQLHNEMVEKGVLPDVV 556

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  LI G+    +  E+
Sbjct: 557 TYSVLINGLNKQARTREA 574



 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 173/314 (55%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   TY S +  MCK G +  A+  L+QM+  GL P   TY TL+DG+  KG 
Sbjct: 336 MLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+    EM+  G  P+  TYN LI+   +  KMV+A  +L++M EKG+ PD ++Y+ 
Sbjct: 396 MNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYST 455

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+CR  +  +A  +  +M+ KGI+P  +TY+SLI    +Q R  EA  LF+  L  G
Sbjct: 456 VLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVG 515

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   + ALI+ +C  G++++A  L  EM    V PD VTY+ L++G  +Q +  EA+
Sbjct: 516 LPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAK 575

Query: 241 RLLDQMKRRGIKPDHISF-----NPTRLTYN---ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      P  +++     N + + +    +LI+G C       A+++   M+ K 
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKN 635

Query: 293 ITPDDNTYFSLIEG 306
             PD   Y  +I G
Sbjct: 636 HKPDGTAYNVMIHG 649



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 145/267 (54%), Gaps = 17/267 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY + ++G C  G++ +A  +LE MKE GL P  V+Y+T++ G+C   +
Sbjct: 406 MIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYD 465

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   + +MV +GI P   TY+ LI     +R+  EA D+  EM   G+ PD  TY  
Sbjct: 466 VDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTA 525

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC  G+ +KA  LH+EM+ KG+ P ++TY+ LI  L+KQ R  EA +L      + 
Sbjct: 526 LINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEE 585

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK---------EMDRM------KVH-PDEVTYN 224
            +P  V ++ LI+ +C+N   +   SL+K         E D++      K H PD   YN
Sbjct: 586 SVPSDVTYHTLIE-NCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYN 644

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGI 251
            ++HG CR G + +A  L  +M + G 
Sbjct: 645 VMIHGHCRGGDIRKAYSLYKEMVKSGF 671



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 151/285 (52%), Gaps = 10/285 (3%)

Query: 27  EEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           E+AS +   ++E   +   T+  ++ ++  Y     ++ A S        G MP   +YN
Sbjct: 114 EDASLVFRSLQETYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYN 173

Query: 85  LLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            ++   +  ++ +  A+++ KEM +  + P+  TYNILI G+C  GN   A    D M  
Sbjct: 174 AVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEK 233

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           KG  P ++TY +LI    K  ++ +  +L  +   KG+ P+++ +N +I+G C  G ++ 
Sbjct: 234 KGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKE 293

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              +L EM++     DEVTYNTL+ G C++G   +A  +  +M R G+       +P+ +
Sbjct: 294 ISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL-------SPSVI 346

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           TY +LI  +CK    + A E L +M  +G+ P++ TY +L++G +
Sbjct: 347 TYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFS 391



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 128/269 (47%), Gaps = 50/269 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++PD+ TY S + G C++ R +EA  + ++M   GL P   TY  LI+ YC +G+
Sbjct: 476 MVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGD 535

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI-------------------------------HE 89
           L+ A    +EMV++G++P   TY++LI                               H 
Sbjct: 536 LQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHT 595

Query: 90  LL-------------------MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           L+                   M+  M EAD + + M EK   PD   YN++I+G+CR G+
Sbjct: 596 LIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGD 655

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            +KA+SL+ EM+  G     +T  +L+  L K+ ++ E + +  N L    L +      
Sbjct: 656 IRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKV 715

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L++ +   GN++    +L EM +    P+
Sbjct: 716 LVEINHREGNMDVVLDVLAEMAKDGFLPN 744



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 8/141 (5%)

Query: 178 AKGMLPDIVMFNALIDGHC-TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           A G +P ++ +NA++D    +  NI  A ++ KEM + +V P+  TYN L+ G C  G +
Sbjct: 162 AHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNL 221

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + A R  D+M+++G  P+ +       TYN LI G CK ++ D   ELLR M  KG+ P+
Sbjct: 222 DVALRFFDRMEKKGCLPNVV-------TYNTLIDGYCKLRKIDDGFELLRSMALKGLEPN 274

Query: 297 DNTYFSLIEGIASVDKAAESS 317
             +Y  +I G+    +  E S
Sbjct: 275 LISYNVVINGLCREGRMKEIS 295


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 176/313 (56%), Gaps = 7/313 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+ +TY   + G C  G ++ A  + ++M+  G +P  VTYNTLIDGYC    ++  F
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGF 260

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M  +G+ P   +YN++I+ L  E +M E   +L EM  +G   D +TYN LI GY
Sbjct: 261 KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGY 320

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ GN  +A  +H EM+  G+ P+++TYTSLI  + K   M  A +  +    +G+ P+ 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE 380

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +  L+DG    G +  A+ +L+EM+     P  VTYN L++G C  GK+E+A  +L+ 
Sbjct: 381 RTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED 440

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MK +G+ PD +S       Y+ ++ G C++ + D A  + REMV KGI PD  TY SLI+
Sbjct: 441 MKEKGLSPDVVS-------YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493

Query: 306 GIASVDKAAESSN 318
           G     +  E+ +
Sbjct: 494 GFCEQRRTKEACD 506



 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/318 (34%), Positives = 176/318 (55%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P+  +Y   ++G+C+EGR++E S +L +M   G     VTYNTLI GYC +GN
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM++ G+ P+  TY  LIH +     M  A + L +M  +G+ P+  TY  
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ + G   +A+ +  EM   G  P+++TY +LI       +M +A  + E+   KG
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ ++ G C + +++ A  + +EM    + PD +TY++L+ G C Q + +EA 
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            L ++M R G+ PD         TY ALI   C   EGDL  A +L  EMV KG+ PD  
Sbjct: 506 DLYEEMLRVGLPPD-------EFTYTALINAYC--MEGDLEKALQLHNEMVEKGVLPDVV 556

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  LI G+    +  E+
Sbjct: 557 TYSVLINGLNKQSRTREA 574



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 170/314 (54%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   TY S +  MCK G +  A   L+QM+  GL P   TY TL+DG+  KG 
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+    EM   G  P+  TYN LI+   +  KM +A  +L++M EKG+ PD ++Y+ 
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+CR  +  +A  +  EM+ KGI+P  +TY+SLI    +Q R  EA  L+E  L  G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   + ALI+ +C  G++E+A  L  EM    V PD VTY+ L++G  +Q +  EA+
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575

Query: 241 RLLDQMKRRGIKPDHISF-----NPTRLTYN---ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      P  +++     N + + +    +LI+G C       A+++   M+ K 
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKN 635

Query: 293 ITPDDNTYFSLIEG 306
             PD   Y  +I G
Sbjct: 636 HKPDGTAYNIMIHG 649



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 163/298 (54%), Gaps = 26/298 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY + ++G C  G++E+A  +LE MKE GL P  V+Y+T++ G+C   +
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   + EMV++GI P   TY+ LI     +R+  EA D+ +EM   G+ PD  TY  
Sbjct: 466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTA 525

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC  G+ +KA  LH+EM+ KG+ P ++TY+ LI  L+KQ+R  EA +L      + 
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK---------EMDRM------KVH-PDEVTYN 224
            +P  V ++ LI+ +C+N   +   SL+K         E D++      K H PD   YN
Sbjct: 586 SVPSDVTYHTLIE-NCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYN 644

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
            ++HG CR G + +A  L  +M + G       F    +T  AL++ L  ++EG + E
Sbjct: 645 IMIHGHCRAGDIRKAYTLYKEMVKSG-------FLLHTVTVIALVKAL--HKEGKVNE 693



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 153/285 (53%), Gaps = 10/285 (3%)

Query: 27  EEASRMLEQMKE--NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           E AS + + ++E  +    T+  ++ ++  Y     ++ A S        G MP   +YN
Sbjct: 114 EYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYN 173

Query: 85  LLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            ++   +  ++ +  A+++ KEM E  + P+  TYNILI G+C  GN   A +L D+M  
Sbjct: 174 AVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMET 233

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           KG  P ++TY +LI    K  ++ +  +L  +   KG+ P+++ +N +I+G C  G ++ 
Sbjct: 234 KGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE 293

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              +L EM+R     DEVTYNTL+ G C++G   +A  +  +M R G+        P+ +
Sbjct: 294 VSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL-------TPSVI 346

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           TY +LI  +CK    + A E L +M  +G+ P++ TY +L++G +
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 50/272 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PD+ TY S + G C++ R +EA  + E+M   GL P   TY  LI+ YC +G+
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD 535

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI-------------------------------HE 89
           LE A    +EMV++G++P   TY++LI                               H 
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHT 595

Query: 90  LL-------------------MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           L+                   M+  M EAD + + M  K   PD   YNI+I+G+CR G+
Sbjct: 596 LIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGD 655

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            +KA++L+ EM+  G     +T  +L+  L K+ ++ E + +  + L    L +      
Sbjct: 656 IRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKV 715

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           L++ +   GN++    +L EM +    P+ ++
Sbjct: 716 LVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 178/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+ YTY   + G+  +G LE+    + +M++ G+ P  VTYNTLID  C K  
Sbjct: 198 MVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKK 257

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    M   G+     +YN +I+ L  + +M E  ++++EM  KG+VPD +TYN 
Sbjct: 258 VKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNT 317

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C+ GN  +   L  EM+ KG+ P ++TYT+LI  + K   +  A ++F+    +G
Sbjct: 318 LVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRG 377

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +  LIDG C  G +  A+ +L EM      P  VTYN L+HG C  G+V+EA 
Sbjct: 378 LRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAV 437

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  M  RG+ PD +S       Y+ +I G C+ +E   A ++  EMV KG+ PD  TY
Sbjct: 438 GILRGMVERGLPPDVVS-------YSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTY 490

Query: 301 FSLIEGIASVDKAAES 316
            SLI+G+    K  E+
Sbjct: 491 SSLIQGLCLQQKLVEA 506



 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 173/305 (56%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD  TY + V+G CKEG L +   +L +M   GL P  VTY TLI+  C  GN
Sbjct: 303 MRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGN 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D+M  +G+ P   TY  LI     +  M EA  +L EM   G  P  +TYN 
Sbjct: 363 LSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNA 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  ++A  +   M+ +G+ P +++Y+++I    ++  + +A Q+ E  + KG
Sbjct: 423 LVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKG 482

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD V +++LI G C    +  AF L +EM R  + PDEVTY +L++  C  G++ +A 
Sbjct: 483 VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKAL 542

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL D+M +RG  PD++       TY+ LI GL K     +A+ LL ++  +   PDD TY
Sbjct: 543 RLHDEMVQRGFLPDNV-------TYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTY 595

Query: 301 FSLIE 305
            +LIE
Sbjct: 596 NTLIE 600



 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 171/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  +  +Y S ++G+C +GR+ E   ++E+M+  GLVP  VTYNTL++G+C +GN
Sbjct: 268 MAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGN 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L        EMV +G+ P   TY  LI+ +     +  A ++  +M  +G+ P+  TY  
Sbjct: 328 LHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTT 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G   +A+ +  EMI  G  P+++TY +L+       R+ EA  +    + +G
Sbjct: 388 LIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERG 447

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ +I G C    + +AF + +EM    V PD VTY++L+ G C Q K+ EA 
Sbjct: 448 LPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAF 507

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M RRG+ PD +       TY +LI   C + E   A  L  EMV +G  PD+ TY
Sbjct: 508 DLFREMMRRGLPPDEV-------TYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTY 560

Query: 301 FSLIEGI 307
             LI G+
Sbjct: 561 SVLINGL 567



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 157/304 (51%), Gaps = 22/304 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY + V G C  GR++EA  +L  M E GL P  V+Y+T+I G+C +  
Sbjct: 408 MIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERE 467

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF  ++EMV++G++P   TY+ LI  L +++K+VEA D+ +EM  +G+ PD +TY  
Sbjct: 468 LGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTS 527

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC  G   KA  LHDEM+ +G  P  +TY+ LI  L+K+ R   A +L      + 
Sbjct: 528 LINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEE 587

Query: 181 MLPDIVMFNALID---------------GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
            +PD V +N LI+               G C  G +  A  + K M +    P+   YN 
Sbjct: 588 SVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNL 647

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           ++HG  R G V +A  L  ++       +H SF    +   AL++ L +    D    LL
Sbjct: 648 MIHGHSRGGNVHKAYNLYMEL-------EHSSFACHTVAVIALVKALAREGMNDELSRLL 700

Query: 286 REMV 289
           + ++
Sbjct: 701 QNIL 704



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 145/313 (46%), Gaps = 47/313 (15%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL------------ 91
           ++  ++ ++      G +  A +      + G  PT  +YN ++  LL            
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 92  ----------------------MERKMVEADDM------LKEMGEKGIVPDSITYNILIN 123
                                 + R +V   D+      +++M ++GI P+ +TYN LI+
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLID 250

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             C+    K+A +L   M   G+   +++Y S+I  L  + RM E  +L E    KG++P
Sbjct: 251 ASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVP 310

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +N L++G C  GN+ +   LL EM    + P+ VTY TL++  C+ G +  A  + 
Sbjct: 311 DEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIF 370

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           DQM+ RG++P+         TY  LI G C+    + A ++L EM+  G +P   TY +L
Sbjct: 371 DQMRVRGLRPN-------ERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNAL 423

Query: 304 IEGIASVDKAAES 316
           + G   + +  E+
Sbjct: 424 VHGYCFLGRVQEA 436



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 50/269 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY S + G+C + +L EA  +  +M   GL P  VTY +LI+ YC  G 
Sbjct: 478 MVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGE 537

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           L  A    DEMV++G +P   TY++LI+ L                              
Sbjct: 538 LSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNT 597

Query: 91  --------------------LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                M+  M EAD + K M ++   P++  YN++I+G+ R GN
Sbjct: 598 LIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGN 657

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KA++L+ E+ H       +   +L+  L+++    E  +L +N L    L D  +   
Sbjct: 658 VHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDAKVAKV 717

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L++ +   GN++   ++L EM +  + PD
Sbjct: 718 LVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 180/305 (59%), Gaps = 7/305 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            MK +G++P+SYTYGS +  +C+  +L EA     +M   G++P  + Y TL+DG+C +G+
Sbjct: 730  MKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGD 789

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A  F  EM  + I P   TY  +I        MVEA  +  EM  +G+ PD IT+  
Sbjct: 790  IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTE 849

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+NGYC+ G+ K AF +H+ MI  G  P ++TYT+LI  L K+  +  A++L       G
Sbjct: 850  LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P+I  +N++++G C +GNIE A  L+ E +   ++ D VTY TLM   C+ G++++A+
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +L +M  +G++       PT +T+N L+ G C +   +  E+LL  M++KGI P+  T+
Sbjct: 970  EILTEMLGKGLQ-------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 1022

Query: 301  FSLIE 305
              L++
Sbjct: 1023 NCLVK 1027



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 180/314 (57%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  +  +Y   +  +C+ GR+ EA  +L  M+  G  P  ++Y+T+I+GYC  G L+  
Sbjct: 664 GVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKV 723

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +   ++M ++G+ P + TY  +I  L    K+ EA++   EM  +GI+PD+I Y  L++G
Sbjct: 724 WKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDG 783

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+ + A     EM  + I P +LTYT++I    +   M+EA +LF   L +G+ PD
Sbjct: 784 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPD 843

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ F  L++G+C  G+I+ AF +   M +    P+ VTY TL+ G C++G ++ A  LL 
Sbjct: 844 IITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 903

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M + G++P+         TYN+++ GLCK+   + A +L+ E  + G+  D  TY +L+
Sbjct: 904 EMWKIGLQPN-------IFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 956

Query: 305 EGI---ASVDKAAE 315
           +       +DKA E
Sbjct: 957 DAYCKSGEMDKAQE 970



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 170/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  PD  +Y + ++G C+ G L++  +++E+MK+ GL P + TY ++I   C    
Sbjct: 695 MELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICK 754

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+ QGI+P    Y  L+        +  A     EM  + I PD +TY  
Sbjct: 755 LAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 814

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+ G+  +A  L  EM+ +G++P ++T+T L+    K   + +A ++  + +  G
Sbjct: 815 IISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG 874

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +  LIDG C  G+++ A  LL EM ++ + P+  TYN++++G C+ G +EEA 
Sbjct: 875 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 934

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L+ + +  G+  D +       TY  L+   CK+ E D A+E+L EM+ KG+ P   T+
Sbjct: 935 KLVGEFEAAGLNADTV-------TYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTF 987

Query: 301 FSLIEGIA 308
             L+ G  
Sbjct: 988 NVLMNGFC 995



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M SR + PD  TY + +SG C+ G + EA ++  +M   GL P  +T+  L++GYC  G+
Sbjct: 800  MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGH 859

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ AF   + M++ G  P   TY  LI  L  E  +  A+++L EM + G+ P+  TYN 
Sbjct: 860  IKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 919

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++NG C+ GN ++A  L  E    G+    +TYT+L+    K   M +A ++    L KG
Sbjct: 920  IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKG 979

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P IV FN L++G C +G +E    LL  M    + P+  T+N L+   C +  ++ A 
Sbjct: 980  LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAAT 1039

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +   M  RG++PD         TY  L++G C  +    A  L +EM  KG +   +TY
Sbjct: 1040 AIYKDMCSRGVEPDG-------KTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTY 1092

Query: 301  FSLIEGIASVDKAAES 316
              LI+G     K  E+
Sbjct: 1093 SVLIKGFFKRKKFVEA 1108



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 159/300 (53%), Gaps = 7/300 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  RG++PD  T+   ++G CK G +++A R+   M + G  P  VTY TLIDG C +G+
Sbjct: 835  MLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 894

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L+ A     EM K G+ P   TYN +++ L     + EA  ++ E    G+  D++TY  
Sbjct: 895  LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT 954

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++ YC+ G   KA  +  EM+ KG+QPT++T+  L+        + + ++L    LAKG
Sbjct: 955  LMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1014

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P+   FN L+  +C   N++ A ++ K+M    V PD  TY  L+ G C    ++EA 
Sbjct: 1015 IAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAW 1074

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L  +MK +G       F+ +  TY+ LI+G  K ++   A E+  +M   G+  D   +
Sbjct: 1075 FLFQEMKGKG-------FSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIF 1127



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 168/331 (50%), Gaps = 33/331 (9%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY---CNKGNLEMAF 65
           D   +  F   + + G L EA ++ E+M   GLV +  + N  +      CNK    +  
Sbjct: 597 DPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAI-I 655

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            FR E  + G+    ++YN++IH +    ++ EA  +L  M  KG  PD I+Y+ +INGY
Sbjct: 656 VFR-EFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGY 714

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR G   K + L ++M  KG++P   TY S+I +L +  ++ EA++ F   + +G+LPD 
Sbjct: 715 CRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDT 774

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           +++  L+DG C  G+I  A     EM    + PD +TY  ++ G C+ G + EA +L  +
Sbjct: 775 IVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 834

Query: 246 MKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQE 277
           M  RG++PD I+F                            +P  +TY  LI GLCK  +
Sbjct: 835 MLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 894

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            D A ELL EM   G+ P+  TY S++ G+ 
Sbjct: 895 LDSANELLHEMWKIGLQPNIFTYNSIVNGLC 925



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 137/259 (52%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G  P+  TY + + G+CKEG L+ A+ +L +M + GL P   TYN++++G C  GN
Sbjct: 870  MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 929

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +E A     E    G+     TY  L+       +M +A ++L EM  KG+ P  +T+N+
Sbjct: 930  IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNV 989

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+NG+C  G  +    L + M+ KGI P   T+  L+     +N +  A  ++++  ++G
Sbjct: 990  LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRG 1049

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PD   +  L+ GHC   N++ A+ L +EM          TY+ L+ G  ++ K  EAR
Sbjct: 1050 VEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAR 1109

Query: 241  RLLDQMKRRGIKPDHISFN 259
             + DQM+R G+  D   F+
Sbjct: 1110 EIFDQMRRDGLAADKEIFD 1128



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 106/193 (54%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
             ++ G+  D+ TY + +   CK G +++A  +L +M   GL PT VT+N L++G+C  G 
Sbjct: 940  FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGM 999

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            LE      + M+ +GI P A+T+N L+ +  +   +  A  + K+M  +G+ PD  TY  
Sbjct: 1000 LEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYEN 1059

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+ G+C   N K+A+ L  EM  KG   ++ TY+ LI    K+ + +EA ++F+     G
Sbjct: 1060 LVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDG 1119

Query: 181  MLPDIVMFNALID 193
            +  D  +F+   D
Sbjct: 1120 LAADKEIFDFFSD 1132



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN-IERAFSLLKEMDRMKVH 217
           VL +   + EA ++FE  L  G++  +   N  +     + N    A  + +E   + V 
Sbjct: 607 VLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVC 666

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
            +  +YN ++H  C+ G++ EA  LL  M+ +G  PD IS       Y+ +I G C+  E
Sbjct: 667 WNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVIS-------YSTVINGYCRFGE 719

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
            D   +L+ +M  KG+ P+  TY S+I  +  + K AE+  +
Sbjct: 720 LDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEA 761


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 11/304 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P+ + Y S ++ +CK G+LEEA  +   M E GL P  VTY  LIDG+  +  L++A
Sbjct: 360 GVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVA 419

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F + ++M++ GI  T  +YN +I+      KM  A+ + KEM +KG+ P   TY  LI+G
Sbjct: 420 FYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISG 479

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G   KAF L+ EM  KGI P  +T+T+LI  L + N+M EA +LF+  +   +LP+
Sbjct: 480 YCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPN 539

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N LI+GHC  GN  RAF LL EM +  + PD  TY  L+ G C  G+V EA+  ++
Sbjct: 540 EVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFIN 599

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL--REMVSKGITPDDNTYFS 302
            +  +  + D        L Y AL+QG CK  EG + E L+  +EMV +G+  D  +Y  
Sbjct: 600 DLHHKHQRLDE-------LCYTALLQGFCK--EGRIKEALVARQEMVGRGLQMDLVSYAV 650

Query: 303 LIEG 306
           LI G
Sbjct: 651 LISG 654



 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 174/313 (55%), Gaps = 7/313 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++ D  TY + V G+C+    E    M+++M E G VP+    + LI+G    G++E 
Sbjct: 289 KGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEG 348

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF   +++ K G++P    YN +I+ L    K+ EA+ +   M E+G+ P+ +TY ILI+
Sbjct: 349 AFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILID 408

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+ R      AF   ++MI  GI  T+ +Y S+I    K  +M  A+ LF+  + KG+ P
Sbjct: 409 GFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKP 468

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +  + +LI G+C +G + +AF L  EM    + P+ VT+  L+ G C+  K+ EA +L 
Sbjct: 469 TVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLF 528

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D+M    I P+ +       TYN LI+G C+      A ELL EM+ KG++PD  TY  L
Sbjct: 529 DEMVELKILPNEV-------TYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPL 581

Query: 304 IEGIASVDKAAES 316
           I G+ S  + +E+
Sbjct: 582 IAGLCSTGRVSEA 594



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 155/312 (49%), Gaps = 8/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+    Y+Y S ++  CK G+++ A  + ++M + GL PT  TY +LI GYC  G +  A
Sbjct: 430 GISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKA 489

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EM  +GI P   T+  LI  L    KM EA  +  EM E  I+P+ +TYN+LI G
Sbjct: 490 FKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEG 549

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +CR GN  +AF L DEMI KG+ P   TY  LI  L    R+ EA +   +   K    D
Sbjct: 550 HCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLD 609

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + + AL+ G C  G I+ A    +EM    +  D V+Y  L+ G   Q        LL 
Sbjct: 610 ELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQND-RILFELLR 668

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  +G++PD++        Y  LI G  K+     A E    M+ +G  P+  TY +L+
Sbjct: 669 EMHGKGMQPDNV-------IYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALV 721

Query: 305 EGIASVDKAAES 316
            G+       E+
Sbjct: 722 NGLFKAGYVNEA 733



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 169/336 (50%), Gaps = 30/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD+YTY   ++G+C  GR+ EA   +  +         + Y  L+ G+C +G 
Sbjct: 566 MIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGR 625

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   R EMV +G+     +Y +LI   L +   +   ++L+EM  KG+ PD++ Y I
Sbjct: 626 IKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRI-LFELLREMHGKGMQPDNVIYTI 684

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN KKAF     MI +G  P  +TYT+L+  L K   + EA  LF+  L   
Sbjct: 685 LIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGE 744

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P+ + +   +D     GN+E A  L   M +     + VTYN L+ G C+ GK +EA 
Sbjct: 745 AIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF-ANTVTYNILIRGYCQIGKFQEAA 803

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LLD M   G+ PD I+++                            P R+ +N LI   
Sbjct: 804 KLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHAC 863

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           C N E D A +L  +M+ +G+ P  +TY SL+  +A
Sbjct: 864 CLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLA 899



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 158/345 (45%), Gaps = 28/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+  T  + ++ + +  +  +   + + +   G+ P    Y  ++   C   +
Sbjct: 181 MRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKD 240

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    ++    G   +  TYN+ I+ L   +++ EA ++ + +GEKG+  D +TY  
Sbjct: 241 FNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCT 300

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G CR    +    + DEMI  G  P+    + LI  L K   +  A +L       G
Sbjct: 301 LVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLG 360

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++ ++N++I+  C  G +E A  L   M    ++P++VTY  L+ G  R+ K++ A 
Sbjct: 361 VVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAF 420

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
              ++M   GI     S+N                            PT  TY +LI G 
Sbjct: 421 YYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGY 480

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           CK+     A +L  EM  KGI P+  T+ +LI G+  ++K AE+S
Sbjct: 481 CKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEAS 525



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 138/274 (50%), Gaps = 9/274 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+Q D  +Y   +SG   +        +L +M   G+ P  V Y  LIDG+   GN
Sbjct: 636 MVGRGLQMDLVSYAVLISGALNQND-RILFELLREMHGKGMQPDNVIYTILIDGFIKSGN 694

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF F   M+ +G +P + TY  L++ L     + EA  + K M     +P+ ITY  
Sbjct: 695 LKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGC 754

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++   + GN + A  LH+ M+      T +TY  LI    +  +  EA +L +  +  G
Sbjct: 755 FLDHLTKEGNMENALQLHNAMLQGSFANT-VTYNILIRGYCQIGKFQEAAKLLDVMIGIG 813

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD + ++  I  +C  GN++ A  + + M +  + PD V +N L+H  C  G+++ A 
Sbjct: 814 MVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRAL 873

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           +L + M  RG+K       PT+ TY++L+  L +
Sbjct: 874 QLRNDMMLRGLK-------PTQSTYHSLMVQLAQ 900



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 143/310 (46%), Gaps = 28/310 (9%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           R+ +   ++  M++ GL+P   T + L++               D +V  G+ P    Y 
Sbjct: 170 RVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYT 229

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +++  L   +   +A +++ +    G     +TYN+ ING C+     +A  +   +  K
Sbjct: 230 VVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEK 289

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G++  ++TY +L+  L +        ++ +  +  G +P     + LI+G    G+IE A
Sbjct: 290 GLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGA 349

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
           F LL ++ ++ V P+   YN++++  C+ GK+EEA  L   M  RG+ P+ +++      
Sbjct: 350 FELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDG 409

Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                 + T  +YN++I   CK  +  +AE L +EMV KG+ P 
Sbjct: 410 FGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPT 469

Query: 297 DNTYFSLIEG 306
             TY SLI G
Sbjct: 470 VATYTSLISG 479



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 1/162 (0%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  TYG F+  + KEG +E A ++   M +     T VTYN LI GYC  G  + A   
Sbjct: 747 PNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANT-VTYNILIRGYCQIGKFQEAAKL 805

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            D M+  G++P   TY+  I+E      +  A DM + M ++G+ PD + +N LI+  C 
Sbjct: 806 LDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCL 865

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            G   +A  L ++M+ +G++PT  TY SL+  L+++ R+ + 
Sbjct: 866 NGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQV 907



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 117/267 (43%), Gaps = 28/267 (10%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           E  K+    ++S +++LI   +  +++++   ++  M + G++P+  T + L+N   R  
Sbjct: 145 ESYKKYKFSSSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIR 204

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
             ++   L D +++ G++P    YT ++  L +     +A ++       G    IV +N
Sbjct: 205 KFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYN 264

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
             I+G C +  +  A  + + +    +  D VTY TL+ G CR  + E    ++D+M   
Sbjct: 265 VFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIEL 324

Query: 250 GIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLA 281
           G  P   + +                            P    YN++I  LCK  + + A
Sbjct: 325 GYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEA 384

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIA 308
           E L   M  +G+ P+D TY  LI+G  
Sbjct: 385 ELLFSVMAERGLNPNDVTYTILIDGFG 411



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  TY +F+   CK G ++ A  M E M + GL P  V +N LI   C  G L+ A
Sbjct: 813 GMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRA 872

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99
              R++M+ +G+ PT STY+ L+ +L    ++ + 
Sbjct: 873 LQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQV 907


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 178/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+    +PD  T+ + + G+CK  RL+EA ++LE M++    P  +TY++LIDG C  G 
Sbjct: 208 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 267

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M+ +GI P   TYN LIH   M   +  A  +++EM   G +PD ITYN 
Sbjct: 268 VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 327

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G A +A  L  +M  K   P ++TY+ LI    K  R+  A  LF++ L + 
Sbjct: 328 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 387

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V F+ L++G+C  G ++ A  LL+EM      PD  TY +L+ G C+ G++ EAR
Sbjct: 388 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 447

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+L +M +RG +P+ +       TY ALI   C+  +  +A +LL EMV  G+ P+  TY
Sbjct: 448 RVLKRMAKRGCQPNVV-------TYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITY 500

Query: 301 FSLIEGIASVDKAAES 316
            SLI G        E+
Sbjct: 501 RSLIGGFCGTGDLEEA 516



 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G  P+ +TY   ++G CK  ++  A  +L++MKE+GL P  VTY+T+I G+C +  
Sbjct: 33  MKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTK 92

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    +MV+ G MP   TYN L+  L     M EA ++L EM E+G+ PD  +Y+ 
Sbjct: 93  VDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDT 152

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+ G    A  + ++  +    P ++ Y++LI  L K  R+ EA +LFE      
Sbjct: 153 LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENS 212

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V F AL+DG C    ++ A  +L+ M+     P+ +TY++L+ G C+ G+V +A+
Sbjct: 213 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 272

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M  RGI+P+ +       TYN+LI G C     D A  L+ EM + G  PD  TY
Sbjct: 273 EVFKRMIVRGIEPNVV-------TYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 325

Query: 301 FSLIEGIASVDKAAESS 317
            +LI+G+    +A E++
Sbjct: 326 NTLIDGLCKTGRAPEAN 342



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+QPD ++Y + ++G+CK G+++ A ++ E        P  V Y+TLI G C  G 
Sbjct: 138 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGR 197

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M +    P   T+  L+  L    ++ EA  +L+ M ++   P+ ITY+ 
Sbjct: 198 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 257

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  + A  +   MI +GI+P ++TY SLI      N +  A  L E   A G
Sbjct: 258 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 317

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPDI+ +N LIDG C  G    A  L  +M     +PD +TY+ L+ G C+  +++ AR
Sbjct: 318 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMAR 377

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M ++ + PD ++F       + L++G C     D AE LL EMV+   +PD  TY
Sbjct: 378 TLFDDMLKQAVLPDVVTF-------STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTY 430

Query: 301 FSLIEGIASVDKAAES 316
            SL++G   V +  E+
Sbjct: 431 TSLVDGFCKVGRMVEA 446



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 170/305 (55%), Gaps = 10/305 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           T+   + G+CK  RL EA+    +MK+ G VP   TYN LI+G+C    +  A+    EM
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
            + G+ P   TY+ +IH    + K+  A  + ++M E G +P+ +TYN L++G CR G  
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 128

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A+ L DEM  +G+QP   +Y +L+  L K  ++  A ++FE+       PD+V ++ L
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTL 188

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I G C  G ++ A  L ++M      PD VT+  LM G C+  +++EA+++L+ M+ R  
Sbjct: 189 IAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNC 248

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA--- 308
            P+ I       TY++LI GLCK  +   A+E+ + M+ +GI P+  TY SLI G     
Sbjct: 249 TPNVI-------TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTN 301

Query: 309 SVDKA 313
            VD A
Sbjct: 302 GVDSA 306



 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 172/319 (53%), Gaps = 9/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY + + G+CK GR  EA+R+   MK     P  +TY+ LI G+C    
Sbjct: 313 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 372

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++MA +  D+M+KQ ++P   T++ L+        + +A+ +L+EM      PD  TY  
Sbjct: 373 IDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTS 432

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G   +A  +   M  +G QP ++TYT+LI    +  +   A +L E  +  G
Sbjct: 433 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNG 492

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEA 239
           + P+++ + +LI G C  G++E A  +L+ ++R +    D   Y  +M G CR G++  A
Sbjct: 493 VQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAA 552

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM-VSKGITPDDN 298
             LL+ +K+ G  P H         Y ALI+GLC+ +E   A E+L EM +S+   P+  
Sbjct: 553 LELLEAIKQSGTPPRHD-------IYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAE 605

Query: 299 TYFSLIEGIASVDKAAESS 317
            Y ++I+ +A   +  E++
Sbjct: 606 AYEAVIQELAREGRHEEAN 624



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++P+  TY S + G C    ++ A  ++E+M   G +P  +TYNTLIDG C  G 
Sbjct: 278 MIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 337

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M  +   P   TY+ LI       ++  A  +  +M ++ ++PD +T++ 
Sbjct: 338 APEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFST 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC  G    A  L +EM+     P + TYTSL+    K  RM+EA ++ +    +G
Sbjct: 398 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V + ALID  C  G    A+ LL+EM    V P+ +TY +L+ G C  G +EEAR
Sbjct: 458 CQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEAR 517

Query: 241 RLLDQMKR-RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           ++L++++R    K D  +       Y  ++ GLC+      A ELL  +   G  P  + 
Sbjct: 518 KMLERLERDENCKADMFA-------YRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDI 570

Query: 300 YFSLIEGIA 308
           Y +LI G+ 
Sbjct: 571 YVALIRGLC 579



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 133/283 (46%), Gaps = 37/283 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++   PD  TY   + G CK  R++ A  + + M +  ++P  VT++TL++GYCN G 
Sbjct: 348 MKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGL 407

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EMV     P   TY  L+       +MVEA  +LK M ++G  P+ +TY  
Sbjct: 408 VDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTA 467

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI----------------------- 157
           LI+ +CR G    A+ L +EM+  G+QP ++TY SLI                       
Sbjct: 468 LIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDE 527

Query: 158 ------FV-------LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
                 F        L +  RM  A +L E     G  P   ++ ALI G C    + +A
Sbjct: 528 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKA 587

Query: 205 FSLLKEMD-RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
             +L+EM    K  P+   Y  ++    R+G+ EEA  L D++
Sbjct: 588 MEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADEL 630



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 7/166 (4%)

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           +  ++T+T +I  L K NR+ EA   F     KG +P+   +N LI+G C    + RA+ 
Sbjct: 4   EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 63

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           LLKEM    + P+ VTY+T++HG CRQ KV+ A +L  QM   G  P+ +       TYN
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV-------TYN 116

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            L+ GLC+N   D A ELL EM  +G+ PD  +Y +L+ G+    K
Sbjct: 117 TLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 162



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
           M+   + +T+  ++ G C+  ++ EA     +MK++G  P+         TYN LI G C
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNE-------WTYNVLINGFC 53

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           K  +   A  LL+EM   G+ P+  TY ++I G     K 
Sbjct: 54  KVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKV 93


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 120/314 (38%), Positives = 180/314 (57%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  T+ S +   CK G LE+A  ++ QM+E GL    VT+  LIDG+C KG 
Sbjct: 284 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM K GI P+   YN LI+      +M  A ++++EM  K + PD +TY+ 
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ GN   AF L+ +M+ KG+ P  +TY+SLI  L ++ R+ +A +LFEN L  G
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LIDGHC  GN+E+A SL  EM R  V PD VTY+ L++G  +  + +EA 
Sbjct: 464 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYN--------ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      PD+I ++   L  +        AL++G C       A+++ + M+ + 
Sbjct: 524 RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRN 583

Query: 293 ITPDDNTYFSLIEG 306
              D + Y  LI G
Sbjct: 584 WKLDGSVYSILIHG 597



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+ YTY   V  +C  GRLEEA  ++  M+  G  P AVTYNTL+  +C  G 
Sbjct: 143 MLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 61  LEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A      M ++G   P   T+N +++ L    +M  A  +  EM  +G+ PD ++YN
Sbjct: 203 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 262

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYC+ G   ++ ++  EM  +G+ P ++T+TSLI    K   + +A  L      +
Sbjct: 263 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 322

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  + V F ALIDG C  G ++ A   ++EM +  + P  V YN L++G C+ G+++ A
Sbjct: 323 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 382

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R L+ +M+ + +KPD +       TY+ +I G CK    D A +L ++M+ KG+ PD  T
Sbjct: 383 RELIREMEAKRVKPDVV-------TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435

Query: 300 YFSLIEGI 307
           Y SLI G+
Sbjct: 436 YSSLIRGL 443



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 175/310 (56%), Gaps = 7/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  T+ S V+G+CK GR+E A ++ ++M   GL P  V+YNTL+ GYC  G L  + +
Sbjct: 220 KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 279

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EM ++G++P   T+  LIH       + +A  ++ +M E+G+  + +T+  LI+G+C
Sbjct: 280 VFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC 339

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G    A    +EM   GIQP+++ Y +LI    K  RM  A +L     AK + PD+V
Sbjct: 340 KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 399

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ +I G+C  GN++ AF L ++M +  V PD +TY++L+ G C + ++ +A  L + M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + G++PD         TY  LI G CK    + A  L  EM+ KG+ PD  TY  LI G
Sbjct: 460 LQLGVQPDE-------FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLING 512

Query: 307 IASVDKAAES 316
           ++   +  E+
Sbjct: 513 LSKSARTKEA 522



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 151/272 (55%), Gaps = 15/272 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+QP    Y + ++G CK GR++ A  ++ +M+   + P  VTY+T+I GYC  GN
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF    +M+K+G++P A TY+ LI  L  E+++ +A ++ + M + G+ PD  TY  
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN +KA SLHDEMI KG+ P ++TY+ LI  LSK  R  EA +L      + 
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 181 MLPDIVMFNAL---------------IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
            +PD + ++AL               + G C  G ++ A  + + M       D   Y+ 
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 593

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           L+HG CR G V +A     QM R G  P+  S
Sbjct: 594 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 165/307 (53%), Gaps = 9/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P    Y + +  +  +  L  A R L  M  +G+ P   TYN L+   C +G LE A
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-PDSITYNILIN 123
                +M   G  P A TYN L+       ++  A+ ++  M E+G   P+ +T+N ++N
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G  + A  + DEM+ +G+ P +++Y +L+    K   + E+  +F     +G++P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V F +LI   C  GN+E+A +L+ +M    +  +EVT+  L+ G C++G +++A   +
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M++ GI+P  +        YNALI G CK    DLA EL+REM +K + PD  TY ++
Sbjct: 352 EEMRKCGIQPSVV-------CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404

Query: 304 IEGIASV 310
           I G   V
Sbjct: 405 ISGYCKV 411



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 128/268 (47%), Gaps = 50/268 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY S + G+C+E RL +A  + E M + G+ P   TY TLIDG+C +GN
Sbjct: 424 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGN 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------HELL----------------- 91
           +E A S  DEM+++G++P   TY++LI            H LL                 
Sbjct: 484 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 543

Query: 92  ---------------------MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                M+  M EAD + + M ++    D   Y+ILI+G+CR GN
Sbjct: 544 LMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGN 603

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            +KA S H +M+  G  P   +  SL+  L ++  ++EAD   ++ L    L D     A
Sbjct: 604 VRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKA 663

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHP 218
           LID +   GN++    +L  M R  + P
Sbjct: 664 LIDLNRKEGNVDALIDVLCGMARDGLLP 691



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 7/172 (4%)

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G  P++  Y +++  LS  + +  A +   + L  G+ P++  +N L+   C  G +E A
Sbjct: 113 GYAPSVPAYNAVLLALSDAS-LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             ++ +M      P+ VTYNTL+   CR G+++ A R++  M+  G      +  P  +T
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG------NAKPNLVT 225

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +N+++ GLCK    + A ++  EMV +G+ PD  +Y +L+ G   V    ES
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 277



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + + G C +G ++EA ++ + M +         Y+ LI G+C  GN+  A SF  +M++ 
Sbjct: 558 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G  P +++   L+  L  E  +VEAD+ ++++     + D+     LI+   + GN    
Sbjct: 618 GFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDAL 677

Query: 135 FSLHDEMIHKGIQPT 149
             +   M   G+ P+
Sbjct: 678 IDVLCGMARDGLLPS 692


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 120/314 (38%), Positives = 180/314 (57%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  T+ S +   CK G LE+A  ++ QM+E GL    VT+  LIDG+C KG 
Sbjct: 284 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM K GI P+   YN LI+      +M  A ++++EM  K + PD +TY+ 
Sbjct: 344 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ GN   AF L+ +M+ KG+ P  +TY+SLI  L ++ R+ +A +LFEN L  G
Sbjct: 404 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LIDGHC  GN+E+A SL  EM R  V PD VTY+ L++G  +  + +EA 
Sbjct: 464 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYN--------ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      PD+I ++   L  +        AL++G C       A+++ + M+ + 
Sbjct: 524 RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRN 583

Query: 293 ITPDDNTYFSLIEG 306
              D + Y  LI G
Sbjct: 584 WKLDGSVYSILIHG 597



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 178/317 (56%), Gaps = 8/317 (2%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M+  G  +P+  T+ S V+G+CK GR+E A ++ ++M   GL P  V+YNTL+ GYC  G
Sbjct: 213 MREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG 272

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  + +   EM ++G++P   T+  LIH       + +A  ++ +M E+G+  + +T+ 
Sbjct: 273 CLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT 332

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G+C+ G    A    +EM   GIQP+++ Y +LI    K  RM  A +L     AK
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + PD+V ++ +I G+C  GN++ AF L ++M +  V PD +TY++L+ G C + ++ +A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L + M + G++PD         TY  LI G CK    + A  L  EM+ KG+ PD  T
Sbjct: 453 CELFENMLQLGVQPDE-------FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 505

Query: 300 YFSLIEGIASVDKAAES 316
           Y  LI G++   +  E+
Sbjct: 506 YSVLINGLSKSARTKEA 522



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+ YTY   V  +C  GRLEEA  ++  M+  G  P AVTYNTL+  +C  G 
Sbjct: 143 MLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 61  LEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A      M ++G   P   T+N +++ L    +M  A  +  EM  +G+ PD ++YN
Sbjct: 203 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 262

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYC+ G   ++ ++  EM  +G+ P ++T+TSLI    K   + +A  L      +
Sbjct: 263 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 322

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  + V F ALIDG C  G ++ A   ++EM +  + P  V YN L++G C+ G+++ A
Sbjct: 323 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 382

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R L+ +M+ + +KPD +       TY+ +I G CK    D A +L ++M+ KG+ PD  T
Sbjct: 383 RELIREMEAKRVKPDVV-------TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435

Query: 300 YFSLIEGI 307
           Y SLI G+
Sbjct: 436 YSSLIRGL 443



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 151/272 (55%), Gaps = 15/272 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+QP    Y + ++G CK GR++ A  ++ +M+   + P  VTY+T+I GYC  GN
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF    +M+K+G++P A TY+ LI  L  E+++ +A ++ + M + G+ PD  TY  
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN +KA SLHDEMI KG+ P ++TY+ LI  LSK  R  EA +L      + 
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 181 MLPDIVMFNAL---------------IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
            +PD + ++AL               + G C  G ++ A  + + M       D   Y+ 
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 593

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           L+HG CR G V +A     QM R G  P+  S
Sbjct: 594 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 165/307 (53%), Gaps = 9/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P    Y + +  +  +  L  A R L  M  +G+ P   TYN L+   C +G LE A
Sbjct: 113 GYAPSVPAYNAVLLAL-SDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILIN 123
                +M   G  P A TYN L+       ++  A+ ++  M E+G   P+ +T+N ++N
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G  + A  + DEM+ +G+ P +++Y +L+    K   + E+  +F     +G++P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V F +LI   C  GN+E+A +L+ +M    +  +EVT+  L+ G C++G +++A   +
Sbjct: 292 DVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M++ GI+P  +        YNALI G CK    DLA EL+REM +K + PD  TY ++
Sbjct: 352 EEMRKCGIQPSVV-------CYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404

Query: 304 IEGIASV 310
           I G   V
Sbjct: 405 ISGYCKV 411



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 50/243 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY S + G+C+E RL +A  + E M + G+ P   TY TLIDG+C +GN
Sbjct: 424 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGN 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------HELL----------------- 91
           +E A S  DEM+++G++P   TY++LI            H LL                 
Sbjct: 484 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 543

Query: 92  ---------------------MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                M+  M EAD + + M ++    D   Y+ILI+G+CR GN
Sbjct: 544 LMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGN 603

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            +KA S H +M+  G  P   +  SL+  L ++  ++EAD   ++ L    L D     A
Sbjct: 604 VRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKA 663

Query: 191 LID 193
           LID
Sbjct: 664 LID 666



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 7/172 (4%)

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G  P++  Y +++  LS  + +  A +   + L  G+ P++  +N L+   C  G +E A
Sbjct: 113 GYAPSVPAYNAVLLALSDAS-LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             ++ +M      P+ VTYNTL+   CR G+++ A R++  M+  G      +  P  +T
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG------NAKPNLVT 225

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +N+++ GLCK    + A ++  EMV +G+ PD  +Y +L+ G   V    ES
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 277


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  223 bits (568), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 177/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+    +PD  T+ + + G+CK  RL+EA ++LE M++    P  +TY++LIDG C  G 
Sbjct: 327 MRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M+ +GI P   TYN LIH   M   +  A  +++EM   G +PD ITYN 
Sbjct: 387 VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNT 446

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G A +A  L  +M  K   P ++TY+ LI    K  R+  A  LF++ L + 
Sbjct: 447 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 506

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V F+ L++G+C  G ++ A  LL+EM      PD  TY +L+ G C+ G++ EAR
Sbjct: 507 VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 566

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+L +M +RG +P+ +       TY ALI   C+  +  +A  LL EMV  G+ P+  TY
Sbjct: 567 RVLKRMAKRGCQPNVV-------TYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITY 619

Query: 301 FSLIEGIASVDKAAES 316
            SLI G        E+
Sbjct: 620 RSLIGGFCGTGDLEEA 635



 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G  P+ +TY   ++G CK  ++  A  +L++MKE+GL P  VTY+T+I G+C +  
Sbjct: 152 MKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTK 211

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    +MV+ G MP   TYN L+  L     M EA ++L EM E+G+ PD  +Y+ 
Sbjct: 212 VDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDT 271

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+ G    A  + ++  +    P ++ Y++LI  L K  R+ EA +LFE      
Sbjct: 272 LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENS 331

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V F AL+DG C    ++ A  +L+ M+     P+ +TY++L+ G C+ G+V +A+
Sbjct: 332 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 391

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M  RGI+P+ +       TYN+LI G C     D A  L+ EM + G  PD  TY
Sbjct: 392 EVFKRMIVRGIEPNVV-------TYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 444

Query: 301 FSLIEGIASVDKAAESS 317
            +LI+G+    +A E++
Sbjct: 445 NTLIDGLCKTGRAPEAN 461



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+QPD ++Y + ++G+CK G+++ A ++ E        P  V Y+TLI G C  G 
Sbjct: 257 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGR 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M +    P   T+  L+  L    ++ EA  +L+ M ++   P+ ITY+ 
Sbjct: 317 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  + A  +   MI +GI+P ++TY SLI      N +  A  L E   A G
Sbjct: 377 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPDI+ +N LIDG C  G    A  L  +M     +PD +TY+ L+ G C+  +++ AR
Sbjct: 437 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMAR 496

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M ++ + PD ++F       + L++G C     D AE LL EMV+   +PD  TY
Sbjct: 497 TLFDDMLKQAVLPDVVTF-------STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTY 549

Query: 301 FSLIEGIASVDKAAES 316
            SL++G   V +  E+
Sbjct: 550 TSLVDGFCKVGRMVEA 565



 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            +S   + +  T+   + G+CK  RL EA+    +MK+ G VP   TYN LI+G+C    
Sbjct: 117 FRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK 176

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+    EM + G+ P   TY+ +IH    + K+  A  + ++M E G +P+ +TYN 
Sbjct: 177 VHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNT 236

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G CR G   +A+ L DEM  +G+QP   +Y +L+  L K  ++  A ++FE+     
Sbjct: 237 LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGD 296

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V ++ LI G C  G ++ A  L ++M      PD VT+  LM G C+  +++EA+
Sbjct: 297 CPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ 356

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++L+ M+ R   P+ I       TY++LI GLCK  +   A+E+ + M+ +GI P+  TY
Sbjct: 357 QVLETMEDRNCTPNVI-------TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTY 409

Query: 301 FSLIEGIA---SVDKA 313
            SLI G      VD A
Sbjct: 410 NSLIHGFCMTNGVDSA 425



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 170/347 (48%), Gaps = 39/347 (11%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K +G   + YTY      + +  R++E   +L+     G+ P   TY  +I G C  G+L
Sbjct: 16  KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDL 75

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMER--------------------------- 94
           + A    +EM + G +P A+ YN +IH L   R                           
Sbjct: 76  DKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDG 135

Query: 95  -----KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
                ++ EA     +M +KG VP+  TYN+LING+C+     +A+ L  EM   G+ P 
Sbjct: 136 LCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPN 195

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           ++TY+++I    +Q ++  A +LF   +  G +P++V +N L+ G C NG ++ A+ LL 
Sbjct: 196 VVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLD 255

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM    + PD+ +Y+TLM G C+ GK++ A ++ +        PD ++       Y+ LI
Sbjct: 256 EMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVA-------YSTLI 308

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            GLCK    D A +L  +M      PD  T+ +L++G+   D+  E+
Sbjct: 309 AGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEA 355



 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 172/319 (53%), Gaps = 9/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY + + G+CK GR  EA+R+   MK     P  +TY+ LI G+C    
Sbjct: 432 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 491

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++MA +  D+M+KQ ++P   T++ L+        + +A+ +L+EM      PD  TY  
Sbjct: 492 IDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTS 551

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G   +A  +   M  +G QP ++TYT+LI    +  +   A +L E  +  G
Sbjct: 552 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNG 611

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEA 239
           + P+++ + +LI G C  G++E A  +L+ ++R +    D   Y  +M G CR G++  A
Sbjct: 612 VQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAA 671

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM-VSKGITPDDN 298
             LL+ +K+ G  P H         Y ALI+GLC+ +E   A E+L EM +S+   P+  
Sbjct: 672 LELLEAIKQSGTPPRHD-------IYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAE 724

Query: 299 TYFSLIEGIASVDKAAESS 317
            Y ++I+ +A   +  E++
Sbjct: 725 AYEAVIQELAREGRHEEAN 743



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++P+  TY S + G C    ++ A  ++E+M   G +P  +TYNTLIDG C  G 
Sbjct: 397 MIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 456

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M  +   P   TY+ LI       ++  A  +  +M ++ ++PD +T++ 
Sbjct: 457 APEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFST 516

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC  G    A  L +EM+     P + TYTSL+    K  RM+EA ++ +    +G
Sbjct: 517 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 576

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V + ALID  C  G    A+ LL+EM    V P+ +TY +L+ G C  G +EEAR
Sbjct: 577 CQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEAR 636

Query: 241 RLLDQMKR-RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           ++L++++R    K D  +       Y  ++ GLC+      A ELL  +   G  P  + 
Sbjct: 637 KILERLERDENCKADMFA-------YRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDI 689

Query: 300 YFSLIEGIA 308
           Y +LI G+ 
Sbjct: 690 YVALIRGLC 698



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 133/283 (46%), Gaps = 37/283 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++   PD  TY   + G CK  R++ A  + + M +  ++P  VT++TL++GYCN G 
Sbjct: 467 MKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGL 526

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EMV     P   TY  L+       +MVEA  +LK M ++G  P+ +TY  
Sbjct: 527 VDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTA 586

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI----------------------- 157
           LI+ +CR G    A+ L +EM+  G+QP ++TY SLI                       
Sbjct: 587 LIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDE 646

Query: 158 ------FV-------LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
                 F        L +  RM  A +L E     G  P   ++ ALI G C    + +A
Sbjct: 647 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKA 706

Query: 205 FSLLKEMD-RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
             +L+EM    K  P+   Y  ++    R+G+ EEA  L D++
Sbjct: 707 MEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADEL 749


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 120/314 (38%), Positives = 180/314 (57%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  T+ S +   CK G LE+A  ++ QM+E GL    VT+  LIDG+C KG 
Sbjct: 142 MTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 201

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM K GI P+   YN LI+      +M  A ++++EM  K + PD +TY+ 
Sbjct: 202 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 261

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ GN   AF L+ +M+ KG+ P  +TY+SLI  L ++ R+ +A +LFEN L  G
Sbjct: 262 IISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLG 321

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LIDGHC  GN+E+A SL  EM R  V PD VTY+ L++G  +  + +EA 
Sbjct: 322 VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAH 381

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYN--------ALIQGLCKNQEGDLAEELLREMVSKG 292
           RLL ++      PD+I ++   L  +        AL++G C       A+++ + M+ + 
Sbjct: 382 RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRN 441

Query: 293 ITPDDNTYFSLIEG 306
              D + Y  LI G
Sbjct: 442 WKLDGSVYSILIHG 455



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 172/309 (55%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+ YTY   V  +C  GRLEEA  ++  M+  G  P AVTYNTL+  +C  G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 61  LEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A      M ++G   P   T+N +++ L    +M  A  +  EM  +G+ PD ++YN
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYC+ G   ++ ++  EM  +G+ P ++T+TSLI    K   + +A  L      +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  + V F ALIDG C  G ++ A   ++EM +  + P  V YN L++G C+ G+++ A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R L+ +M+ + +KPD +       TY+ +I G CK    D A +L ++M+ KG+ PD  T
Sbjct: 241 RELIREMEAKRVKPDVV-------TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 293

Query: 300 YFSLIEGIA 308
           Y SLI G+ 
Sbjct: 294 YSSLIRGLC 302



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 175/310 (56%), Gaps = 7/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  T+ S V+G+CK GR+E A ++ ++M   GL P  V+YNTL+ GYC  G L  + +
Sbjct: 78  KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLA 137

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EM ++G++P   T+  LIH       + +A  ++ +M E+G+  + +T+  LI+G+C
Sbjct: 138 VFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC 197

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G    A    +EM   GIQP+++ Y +LI    K  RM  A +L     AK + PD+V
Sbjct: 198 KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 257

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ +I G+C  GN++ AF L ++M +  V PD +TY++L+ G C + ++ +A  L + M
Sbjct: 258 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 317

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + G++PD         TY  LI G CK    + A  L  EM+ KG+ PD  TY  LI G
Sbjct: 318 LQLGVQPDE-------FTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLING 370

Query: 307 IASVDKAAES 316
           ++   +  E+
Sbjct: 371 LSKSARTKEA 380



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 151/272 (55%), Gaps = 15/272 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+QP    Y + ++G CK GR++ A  ++ +M+   + P  VTY+T+I GYC  GN
Sbjct: 212 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF    +M+K+G++P A TY+ LI  L  E+++ +A ++ + M + G+ PD  TY  
Sbjct: 272 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN +KA SLHDEMI KG+ P ++TY+ LI  LSK  R  EA +L      + 
Sbjct: 332 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 391

Query: 181 MLPDIVMFNAL---------------IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
            +PD + ++AL               + G C  G ++ A  + + M       D   Y+ 
Sbjct: 392 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSI 451

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           L+HG CR G V +A     QM R G  P+  S
Sbjct: 452 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 483



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 128/268 (47%), Gaps = 50/268 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY S + G+C+E RL +A  + E M + G+ P   TY TLIDG+C +GN
Sbjct: 282 MLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGN 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------HELL----------------- 91
           +E A S  DEM+++G++P   TY++LI            H LL                 
Sbjct: 342 VEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 401

Query: 92  ---------------------MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                M+  M EAD + + M ++    D   Y+ILI+G+CR GN
Sbjct: 402 LMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGN 461

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            +KA S H +M+  G  P   +  SL+  L ++  ++EAD   ++ L    L D     A
Sbjct: 462 VRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKA 521

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHP 218
           LID +   GN++    +L  M R  + P
Sbjct: 522 LIDLNRKEGNVDALIDVLCGMARDGLLP 549



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + + G C +G ++EA ++ + M +         Y+ LI G+C  GN+  A SF  +M++ 
Sbjct: 416 ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 475

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G  P +++   L+  L  E  +VEAD+ ++++     + D+     LI+   + GN    
Sbjct: 476 GFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDAL 535

Query: 135 FSLHDEMIHKGIQPT 149
             +   M   G+ P+
Sbjct: 536 IDVLCGMARDGLLPS 550


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 183/309 (59%), Gaps = 10/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R +  +  T+  F++G+C+ G+L +A   +E MK  G+ P  VTYNTL+DGYC +G+
Sbjct: 191 MIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGS 250

Query: 61  ---LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
              +  A +F  EM+   I P   T+N LI     +  +  A    +EM ++G+ P+ +T
Sbjct: 251 AGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVT 310

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LING C  G  ++A  L D+M+  G++P ++TY +LI    K+  M EA ++F++  
Sbjct: 311 YNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVS 370

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            + ++P+++ FN +ID +C  G +E  FSL   M    + P+  TYN L+ G CR+  ++
Sbjct: 371 KQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQ 430

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A+ LL++M+ +G+K D +       TYN LI GLCKN +   AE+LL EM + G+ P+ 
Sbjct: 431 AAKELLNEMENKGLKGDVV-------TYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNH 483

Query: 298 NTYFSLIEG 306
            TY +L++G
Sbjct: 484 VTYNTLMDG 492



 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 171/300 (57%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + P+  T+ + + G CK+  +  A +  E+M++ GL P  VTYN+LI+G CN G 
Sbjct: 264 MLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGK 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    D+MV  G+ P   TYN LI+    ++ M EA  +  ++ ++ +VP+ IT+N 
Sbjct: 324 LEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNT 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YC+ G  ++ FSL   M+ +GI P + TY  LI  L ++  +  A +L      KG
Sbjct: 384 MIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKG 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+V +N LIDG C N     A  LL EM  + + P+ VTYNTLM G C +GK++ A 
Sbjct: 444 LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAAL 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M++   +P+ +       TYN LI+G CK  + + A  LL EM+ KG+ P+  TY
Sbjct: 504 NVRTRMEKERKQPNVV-------TYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTY 556



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 163/296 (55%), Gaps = 23/296 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+  TY S ++G+C  G+LEEA  + ++M   GL P  VTYN LI+G+C K  
Sbjct: 299 MQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKM 358

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D++ KQ ++P   T+N +I     E  M E   +   M ++GI+P+  TYN 
Sbjct: 359 MKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNC 418

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G CR  + + A  L +EM +KG++  ++TY  LI  L K ++   A++L       G
Sbjct: 419 LIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLG 478

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +N L+DG+C  G ++ A ++   M++ +  P+ VTYN L+ G C+  K+E A 
Sbjct: 479 LKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAAN 538

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            LL++M  +G+ P+  +++  RL                       EM+ KG +PD
Sbjct: 539 GLLNEMLEKGLNPNRTTYDIVRL-----------------------EMLEKGFSPD 571



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 170/332 (51%), Gaps = 37/332 (11%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK---GNLEMAFSFRDEMV 72
            V    K   L  A     + K+ G   +  + N L+     +   G++E  +    EM+
Sbjct: 136 LVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYK---EMI 192

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           K+ I    +T+N+ I+ L    K+ +A+D +++M   GI P+ +TYN L++GYC+ G+A 
Sbjct: 193 KRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAG 252

Query: 133 KAF---SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           K +   +   EM+   I P  +T+ +LI    K   +  A + FE    +G+ P+IV +N
Sbjct: 253 KMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYN 312

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           +LI+G C NG +E A  L  +M  + + P+ VTYN L++G C++  ++EA ++ D + ++
Sbjct: 313 SLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ 372

Query: 250 GIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLA 281
            + P+ I+FN                            P   TYN LI GLC+ Q+   A
Sbjct: 373 ELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAA 432

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           +ELL EM +KG+  D  TY  LI+G+   DK+
Sbjct: 433 KELLNEMENKGLKGDVVTYNILIDGLCKNDKS 464



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 146/298 (48%), Gaps = 35/298 (11%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           TA+  + L+  Y     L  A+         G   + ++ N L+  L+ E K+ + + + 
Sbjct: 129 TALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVY 188

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           KEM ++ I  +  T+NI ING CR G   KA    ++M   GI P ++TY +L+    K+
Sbjct: 189 KEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKR 248

Query: 164 ---NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
               +M +A+   +  LA  + P+ V FN LIDG C + N+  A    +EM +  + P+ 
Sbjct: 249 GSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNI 308

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------------------- 259
           VTYN+L++G C  GK+EEA  L D+M   G+KP+ +++N                     
Sbjct: 309 VTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDD 368

Query: 260 -------PTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIA 308
                  P  +T+N +I   CK  EG + E   L   M+ +GI P+ +TY  LI G+ 
Sbjct: 369 VSKQELVPNVITFNTMIDAYCK--EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLC 424



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 19/126 (15%)

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
           G++E  +   KEM + ++H +  T+N  ++G CR GK+ +A   ++ MK  GI P+ +  
Sbjct: 182 GDVEYVY---KEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVV-- 236

Query: 259 NPTRLTYNALIQGLCK-NQEGDL--AEELLREMVSKGITPDDNTYFSLIEG------IAS 309
                TYN L+ G CK    G +  AE  ++EM++  I P++ T+ +LI+G      +A+
Sbjct: 237 -----TYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAA 291

Query: 310 VDKAAE 315
             KA E
Sbjct: 292 AKKAFE 297


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 180/319 (56%), Gaps = 8/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  P+  TY S + G+CK G+L+EA+ +L++M  +G  P  VTYNT+IDG+C  G 
Sbjct: 246 MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGR 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+   +EMV  G  P   TY +L+       K  +A  +++ M EKG VP+  TYN 
Sbjct: 306 IDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNS 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+    ++A  L   MI KG  P +++Y ++I  L K  ++ E   L E  L+  
Sbjct: 366 LLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNN 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PDIV FN +ID  C    ++ A+ L   +      P+ VTYN+L+HG C+  + ++A 
Sbjct: 426 CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE 485

Query: 241 RLLDQMKRR-GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            LL +M R+ G  PD I       TYN +I GLCK++  D A +L  +M+S G+ PDD T
Sbjct: 486 YLLREMTRKQGCSPDII-------TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 538

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y  +I  +       E++N
Sbjct: 539 YSIVISSLCKWRFMDEANN 557



 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  +Y + ++G+CK  +++EA R++++M + G  P  +TY TL+DG+C  G+
Sbjct: 105 MVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGD 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-PDSITYN 119
           L+ A     +M ++G  P A TYN ++H L   RK+  A  + KEM E G   PD  TY+
Sbjct: 165 LDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYS 224

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +++   + G    A  L + M+ KG  P ++TY+SL+  L K  ++ EA  L +     
Sbjct: 225 TIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS 284

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+IV +N +IDGHC  G I+ A+ LL+EM      P+ VTY  L+   C+ GK E+A
Sbjct: 285 GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDA 344

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L++ M  +G       + P   TYN+L+   CK  E + A +LL  M+ KG  P+  +
Sbjct: 345 IGLVEVMVEKG-------YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS 397

Query: 300 YFSLIEGIASVDKAAE 315
           Y ++I G+    K  E
Sbjct: 398 YNTVIAGLCKATKVHE 413



 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 187/346 (54%), Gaps = 33/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV-TYNTLIDGYCNKG 59
           M  RG +P++ TY + + G+C   +L+ A ++ ++M+E+G  P  V TY+T++D     G
Sbjct: 175 MTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSG 234

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A    + MV +G  P   TY+ L+H L    K+ EA  +L+ M   G  P+ +TYN
Sbjct: 235 KVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYN 294

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G+C+ G   +A+ L +EM+  G QP ++TYT L+    K  +  +A  L E  + K
Sbjct: 295 TIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK 354

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G +P++  +N+L+D  C    +ERA  LL  M +    P+ V+YNT++ G C+  KV E 
Sbjct: 355 GYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEG 414

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             LL+QM      PD ++FN                            P  +TYN+L+ G
Sbjct: 415 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 474

Query: 272 LCKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIAS---VDKA 313
           LCK++  D AE LLREM  K G +PD  TY ++I+G+     VD+A
Sbjct: 475 LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRA 520



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 173/315 (54%), Gaps = 8/315 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+   PDS TY + ++G+ K  RL++A R+LE+M +NG  P   +YNT++ G+C    +E
Sbjct: 37  SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVE 96

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++MV +G  P   +Y  +I+ L    ++ EA  ++ +M ++G  P+ ITY  L+
Sbjct: 97  NALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 156

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+CR G+   A  L  +M  +G +P  +TY +++  L    ++  A QLF+     G  
Sbjct: 157 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSC 216

Query: 183 -PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD+  ++ ++D    +G ++ A  L++ M      P+ VTY++L+HG C+ GK++EA  
Sbjct: 217 PPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATA 276

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL +M R G  P+ +       TYN +I G CK    D A  LL EMV  G  P+  TY 
Sbjct: 277 LLQRMTRSGCSPNIV-------TYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYT 329

Query: 302 SLIEGIASVDKAAES 316
            L++      KA ++
Sbjct: 330 VLLDAFCKCGKAEDA 344



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 166/305 (54%), Gaps = 8/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  +Y + ++G+CK  ++ E   +LEQM  N  VP  VT+NT+ID  C    
Sbjct: 386 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYR 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
           +++A+   + + + G  P   TYN L+H L   R+  +A+ +L+EM  K G  PD ITYN
Sbjct: 446 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 505

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+     +A+ L  +M+  G+ P  +TY+ +I  L K   M EA+ + E  L  
Sbjct: 506 TVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 565

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P  + +  LIDG C  GN+++A  +L+ +     +PD VT++  +    ++G++ +A
Sbjct: 566 GFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQA 625

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL+ M R G+ PD +       TYN L++G C     + A +L   M   G  PD+ T
Sbjct: 626 GELLETMLRAGLVPDTV-------TYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNAT 678

Query: 300 YFSLI 304
           Y +L+
Sbjct: 679 YTTLV 683



 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 154/282 (54%), Gaps = 7/282 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           M   GL   A  + +++ G C+ G    A     EM K    P + TYN +I+ L    +
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDR 59

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           + +A  +L+EM + G  P+  +YN +++G+C+    + A  L ++M+ +G  P +++YT+
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           +I  L K +++ EA ++ +  + +G  P+++ +  L+DG C  G+++ A  L+++M    
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
             P+ +TYN +MHG C   K++ A +L  +M+  G  P      P   TY+ ++  L K+
Sbjct: 180 YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCP------PDVFTYSTIVDSLVKS 233

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            + D A  L+  MVSKG +P+  TY SL+ G+    K  E++
Sbjct: 234 GKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEAT 275


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 180/319 (56%), Gaps = 8/319 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S+G  P+  TY S + G+CK G+L+EA+ +L++M  +G  P  VTYNT+IDG+C  G 
Sbjct: 974  MVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGR 1033

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ A+   +EMV  G  P   TY +L+       K  +A  +++ M EKG VP+  TYN 
Sbjct: 1034 IDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNS 1093

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++ +C+    ++A  L   MI KG  P +++Y ++I  L K  ++ E   L E  L+  
Sbjct: 1094 LLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNN 1153

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             +PDIV FN +ID  C    ++ A+ L   +      P+ VTYN+L+HG C+  + ++A 
Sbjct: 1154 CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE 1213

Query: 241  RLLDQMKRR-GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL +M R+ G  PD I       TYN +I GLCK++  D A +L  +M+S G+ PDD T
Sbjct: 1214 YLLREMTRKQGCSPDII-------TYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 1266

Query: 300  YFSLIEGIASVDKAAESSN 318
            Y  +I  +       E++N
Sbjct: 1267 YSIVISSLCKWRFMDEANN 1285



 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 177/316 (56%), Gaps = 11/316 (3%)

Query: 2    KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
            +S    PD +TY + V  + K G++++A R++E M   G  P  VTY++L+ G C  G L
Sbjct: 940  ESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKL 999

Query: 62   EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
            + A +    M + G  P   TYN +I       ++ EA  +L+EM + G  P+ +TY +L
Sbjct: 1000 DEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVL 1059

Query: 122  INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            ++ +C+CG A+ A  L + M+ KG  P + TY SL+ +  K++ +  A QL  + + KG 
Sbjct: 1060 LDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGC 1119

Query: 182  LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            +P++V +N +I G C    +     LL++M      PD VT+NT++   C+  +V+ A  
Sbjct: 1120 VPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYE 1179

Query: 242  LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTY 300
            L + ++  G  P+ +       TYN+L+ GLCK++  D AE LLREM  K G +PD  TY
Sbjct: 1180 LFNLIQESGCTPNLV-------TYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITY 1232

Query: 301  FSLIEGIAS---VDKA 313
             ++I+G+     VD+A
Sbjct: 1233 NTVIDGLCKSKRVDRA 1248



 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 186/345 (53%), Gaps = 28/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  PD  +Y + ++G+CK  +++EA R++++M + G  P  +TY TL+DG+C  G+
Sbjct: 291 MVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGD 350

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     +M ++G  P A TYN ++H       M  A  +L+ M + G  PD+I Y+ 
Sbjct: 351 LDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYST 410

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+ G  ++A  L ++MI +G +P +   ++LI  L K   +  A +L    +   
Sbjct: 411 IISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMD 470

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V ++ LI   C    +  A S L  M + + +PD VTYN+++ G C+  ++ +A 
Sbjct: 471 CAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAF 530

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L D+M+  G+ PD ++++                            P  +TY+ALI GL
Sbjct: 531 LLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGL 590

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           CK    D A ++ +EM+  G  P+  TY +LI+G+  ++K  +++
Sbjct: 591 CKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAA 635



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 159/307 (51%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+  Y + +SG CK G+L EA  +LEQM   G  P     +TLID  C    
Sbjct: 396 MIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAA 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A       +     P    Y++LIH L   +++ EA+  L  M +    PD +TYN 
Sbjct: 456 IDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNS 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C+      AF L D M   G+ P ++TY+ +I    K N +  A ++ E      
Sbjct: 516 VVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAK 575

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V ++ALI+G C  G +++AF + +EM      P+ VTYNTL+ G C+  KVE+A 
Sbjct: 576 CVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAA 635

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L+ M+++   PD I       TY  LI GLC     + A  +LREM  KG  PD  TY
Sbjct: 636 EMLEIMRKQSCTPDSI-------TYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTY 688

Query: 301 FSLIEGI 307
            +L+  +
Sbjct: 689 GTLLRAL 695



 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 166/305 (54%), Gaps = 8/305 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +G  P+  +Y + ++G+CK  ++ E   +LEQM  N  VP  VT+NT+ID  C    
Sbjct: 1114 MIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYR 1173

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
            +++A+   + + + G  P   TYN L+H L   R+  +A+ +L+EM  K G  PD ITYN
Sbjct: 1174 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 1233

Query: 120  ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
             +I+G C+     +A+ L  +M+  G+ P  +TY+ +I  L K   M EA+ + E  L  
Sbjct: 1234 TVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 1293

Query: 180  GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            G  P  + +  LIDG C  GN+++A  +L+ +     +PD VT++  +    ++G++ +A
Sbjct: 1294 GFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQA 1353

Query: 240  RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
              LL+ M R G+ PD +       TYN L++G C     + A +L   M   G  PD+ T
Sbjct: 1354 GELLETMLRAGLVPDTV-------TYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNAT 1406

Query: 300  YFSLI 304
            Y +L+
Sbjct: 1407 YTTLV 1411



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 162/306 (52%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+   PDS TY + ++G+ K  RL++A R+LE+M +NG  P   +YNT++ G+C    +E
Sbjct: 223 SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVE 282

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++MV +G  P   +Y  +I+ L    ++ EA  ++ +M ++G  P+ ITY  L+
Sbjct: 283 NALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 342

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+CR G+   A  L  +M  +G +P  +TY +++ V  ++N M  A Q+ +  +  G  
Sbjct: 343 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCP 402

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD + ++ +I G C  G +  A  LL++M R    PD    +TL+   C+   ++ A+ L
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL 462

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L         PD ++       Y+ LI  LCK +    AE  L  MV     PD  TY S
Sbjct: 463 LRMSIGMDCAPDVVA-------YSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNS 515

Query: 303 LIEGIA 308
           +++G+ 
Sbjct: 516 VVDGLC 521



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 170/310 (54%), Gaps = 11/310 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+ TY + +SG  + G++  A  + ++M   GL   A  + +++ G C+ G    A    
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF 219

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM K    P + TYN +I+ L    ++ +A  +L+EM + G  P+  +YN +++G+C+ 
Sbjct: 220 REMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKA 278

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
              + A  L ++M+ +G  P +++YT++I  L K +++ EA ++ +  + +G  P+++ +
Sbjct: 279 NRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITY 338

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             L+DG C  G+++ A  L+++M      P+ +TYN +MH  CR+  +E A ++L  M +
Sbjct: 339 GTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQ 398

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI- 307
            G  PD I+       Y+ +I G CK  +   A +LL +M+ +G  PD     +LI+ + 
Sbjct: 399 TGCPPDAIN-------YSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALC 451

Query: 308 --ASVDKAAE 315
             A++D A E
Sbjct: 452 KAAAIDSAQE 461



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 160/318 (50%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++  +  + S + G+C  G+  +A     +M +    P +VTYNT+I+G      
Sbjct: 187 MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EMV  G  P   +YN ++H      ++  A  +L++M  +G  PD ++Y  
Sbjct: 246 LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTT 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     +A  + D+MI +G QP ++TY +L+    +   +  A +L      +G
Sbjct: 306 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ + +N ++   C   ++ERA  +L+ M +    PD + Y+T++ G C+ GK+ EA 
Sbjct: 366 YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAH 425

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+QM RRG +PD    +        LI  LCK    D A+ELLR  +     PD   Y
Sbjct: 426 DLLEQMIRRGCRPDVACLS-------TLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAY 478

Query: 301 FSLIEGIASVDKAAESSN 318
             LI  +    +  E+ +
Sbjct: 479 SILIHALCKAKRLPEAES 496



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 159/314 (50%), Gaps = 14/314 (4%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
            G   D+YT    +  + +  R ++A     Q+  N L   P   T+  LI G C  G++ 
Sbjct: 839  GYNHDTYTCNCLLQALLRLKRPKDAL----QVYRNKLCCSPNMFTFTILIHGLCRAGDIG 894

Query: 63   MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-PDSITYNIL 121
             A+    EM + G+      +N++I  L   RK+  A ++ KEM E G   PD  TY+ +
Sbjct: 895  TAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTI 954

Query: 122  INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            ++   + G    A  L ++M+ KG  P ++TY+SL+  L K  ++ EA  L +     G 
Sbjct: 955  VDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGC 1014

Query: 182  LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             P+IV +N +IDGHC  G I+ A+ LL+EM      P+ VTY  L+   C+ GK E+A  
Sbjct: 1015 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 1074

Query: 242  LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
            L++ M  +G       + P   TYN+L+   CK  E + A +LL  M+ KG  P+  +Y 
Sbjct: 1075 LVEVMVEKG-------YVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYN 1127

Query: 302  SLIEGIASVDKAAE 315
            ++I G+    K  E
Sbjct: 1128 TVIAGLCKATKVHE 1141



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 127/240 (52%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD   Y   +  +CK  RL EA   L+ M +N   P  VTYN+++DG C    +  AF  
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLL 532

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            D M   G+MP   TY+++IH    +  +  A  ML+ M E   VPD +TY+ LING C+
Sbjct: 533 FDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCK 592

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   KAF +  EM+  G  P ++TY +LI  L K N++ +A ++ E    +   PD + 
Sbjct: 593 AGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSIT 652

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI+G C    +E A+ +L+EM      PD +TY TL+    +   +E   +LL +M+
Sbjct: 653 YTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 97/174 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GV PD  TY   +   CK+  L+ A +MLE+MKE   VP  VTY+ LI+G C  G 
Sbjct: 536 MRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGT 595

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF    EM+  G  P   TYN LI  L    K+ +A +ML+ M ++   PDSITY  
Sbjct: 596 VDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTC 655

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           LING C     ++A+ +  EM  KG  P  +TY +L+  L K N +   +QL +
Sbjct: 656 LINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLK 709



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 51/308 (16%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S G+ PD  TY   +S +CK   ++EA+ +LE M +NG  P A+TY TLIDG+C  GN
Sbjct: 1255 MLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGN 1314

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L+ A      ++ +G  P   T+++ I  L    ++ +A ++L+ M   G+VPD++TYN 
Sbjct: 1315 LDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNT 1374

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM-------------- 166
            L+ G+C     + A  L + M   G +P   TYT+L+  L  +                 
Sbjct: 1375 LLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDT 1434

Query: 167  -----------------IEAD-----QLFENFLAKGMLPD------------IVMFNALI 192
                             +EAD      + + F   G   D            +V+++A++
Sbjct: 1435 GFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAML 1494

Query: 193  DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR-RGI 251
              +  +   E+AF L + M    V PD VT+ +L+   C  G ++ A      + R  G+
Sbjct: 1495 GVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGL 1554

Query: 252  KP--DHIS 257
            +P  DH S
Sbjct: 1555 EPGVDHFS 1562



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 41/251 (16%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N L++ L+   +  +A D+ +   E     D++TY+ LI+G+ R G    A+ L DEM  
Sbjct: 130 NCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNR 189

Query: 144 KGIQ----------------------------------PTMLTYTSLIFVLSKQNRMIEA 169
           KG++                                  P  +TY ++I  LSK +R+ +A
Sbjct: 190 KGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDA 249

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +L E  +  G  P++  +N ++ G C    +E A  LL++M      PD V+Y T+++G
Sbjct: 250 IRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVING 309

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+  +V+EA R++D+M +RG +P+ I       TY  L+ G C+  + D A EL+R+M 
Sbjct: 310 LCKLDQVDEACRVMDKMIQRGCQPNVI-------TYGTLVDGFCRVGDLDGAVELVRKMT 362

Query: 290 SKGITPDDNTY 300
            +G  P+  TY
Sbjct: 363 ERGYRPNAITY 373



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 8/198 (4%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N L+N   +     +A  L    I        +TY++LI    +  +++ A +LF+    
Sbjct: 130 NCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNR 189

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG+     +  +++ G C  G    A    +EM +    PD VTYNT+++G  +  ++++
Sbjct: 190 KGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSK-TCPPDSVTYNTMINGLSKSDRLDD 248

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A RLL++M   G       F P   +YN ++ G CK    + A  LL +MV++G  PD  
Sbjct: 249 AIRLLEEMVDNG-------FAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVV 301

Query: 299 TYFSLIEGIASVDKAAES 316
           +Y ++I G+  +D+  E+
Sbjct: 302 SYTTVINGLCKLDQVDEA 319



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 147/341 (43%), Gaps = 37/341 (10%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK--ENGLVPT--AVTYNTLIDG-- 54
            MK +G  PD  TYG+ +  + K   LE   ++L++M+  E G      A  +  +I G  
Sbjct: 676  MKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEEGQWNANGARLHRFVIRGDV 735

Query: 55   -----------------YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
                               +  + +  FS R    +   + T   ++  I  +L  R   
Sbjct: 736  LMMAMAVPMAALTSQTRVLDSKDQQGQFSPRPHQYRVTAVATQGGFHHKIVRILNSRFAW 795

Query: 98   E-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
            E A+  L+     G +  ++   +L     R G+A   F        +G      T   L
Sbjct: 796  EYAETALERF--TGKLTTTVVGKVLQG--VRNGDAALGF-FDWATSQEGYNHDTYTCNCL 850

Query: 157  IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
            +  L +  R  +A Q++ N L     P++  F  LI G C  G+I  A+ LLKEM R  V
Sbjct: 851  LQALLRLKRPKDALQVYRNKLCCS--PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGV 908

Query: 217  HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
              + + +N ++ G C   K++ A  L  +M+  G  P      P   TY+ ++  L K+ 
Sbjct: 909  PQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCP------PDVFTYSTIVDSLVKSG 962

Query: 277  EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            + D A  L+ +MVSKG +P+  TY SL+ G+    K  E++
Sbjct: 963  KVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEAT 1003



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 18/135 (13%)

Query: 27   EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK----QGIMPTAST 82
            E+A  +   M   G+ P AVT+ +L+   C+ G L+ A    DE V      G+ P    
Sbjct: 1504 EQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAV---DEFVSISRDYGLEPGVDH 1560

Query: 83   YNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
            ++ +I +LL    +V EA+D++  M  K   P + T+N L++ Y  CG+ ++A  + +  
Sbjct: 1561 FSCVI-DLLGRLGLVNEAEDLMLGMPCK---PSAATWNCLLSAYKICGDFERALRVAE-- 1614

Query: 142  IHKGIQPTMLTYTSL 156
                + PT  +Y  L
Sbjct: 1615 ----LNPTQASYLLL 1625


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 184/332 (55%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P  +TY + ++G+CK+GR   A  +L +M   GL P   TYNTL+   C + N
Sbjct: 27  MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDN 86

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM++QG++P   +++ L+      R + +A    ++M + G+VPD++ Y +
Sbjct: 87  FSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 146

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYCR GN  +A  + DEM+ +G    ++ Y +++  L K+  + +AD+LF+  + +G
Sbjct: 147 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 206

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD   F  LI GHC +GN+ +A SL   M +  + PD V YNTL+ G C+ G++E+A 
Sbjct: 207 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKAS 266

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L D M  R I P+HI++                             PT +T N +I+G 
Sbjct: 267 ELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGY 326

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           C++ +   A+E L  M++KG+ PD  +Y +LI
Sbjct: 327 CRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 157/305 (51%), Gaps = 7/305 (2%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY + +   C+EG LEEA  ++  M + GL P+  TYN +I+G C KG    A     EM
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           +  G+ P  +TYN L+ E        EA ++  EM  +G+VPD ++++ L+  + R  + 
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A     +M   G+ P  + YT L+    +   M+EA ++ +  L +G + D++ +N +
Sbjct: 123 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTI 182

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G C    +  A  L  EM      PD  T+ TL+HG C+ G + +A  L   M +R I
Sbjct: 183 LNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNI 242

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           KPD ++       YN LI G CK  E + A EL   M+S+ I P+  TY  LI    SV 
Sbjct: 243 KPDIVA-------YNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVG 295

Query: 312 KAAES 316
             +E+
Sbjct: 296 HVSEA 300



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 125/228 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+ PD+  Y   + G C+ G + EA ++ ++M E G V   + YNT+++G C +  
Sbjct: 132 MKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKM 191

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEMV++G +P   T+  LIH    +  M +A  +   M ++ I PD + YN 
Sbjct: 192 LTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNT 251

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G  +KA  L D MI + I P  +TY  LI        + EA +L++  + KG
Sbjct: 252 LIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           + P +V  N +I G+C +G+  +A   L  M    V PD ++YNTL++
Sbjct: 312 IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 7/157 (4%)

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           M+TY +LI    ++  + EA ++  +   KG+ P +  +NA+I+G C  G   RA  +L 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM  + + PD  TYNTL+   CR+    EA+ +  +M R+G+ PD +SF       ++L+
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSF-------SSLM 113

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               +N+  D A    R+M   G+ PD+  Y  L+ G
Sbjct: 114 AVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHG 150



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 51/89 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR + P+  TYG  ++  C  G + EA R+ + M E G+ PT VT NT+I GYC  G+
Sbjct: 272 MISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGD 331

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHE 89
              A  F   M+ +G+ P   +YN LI++
Sbjct: 332 SSKADEFLGRMIAKGVAPDHISYNTLIND 360


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/317 (36%), Positives = 179/317 (56%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD YTY + +  +C E RL EA + LE+M    L P  VTY  LIDG C  G 
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +M K+ + PTA TYN LI  L    +  EA D+L+EM   G +PD  TY  
Sbjct: 97  VDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+   +  A  + ++++ +G +P ++TY+ LI  L K+ R+ EA  LF   +  G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 181 -MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             +P+ V +N+LI G C  G ++ A +LL+ M      PD VTY TLM+G C+  ++++A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL+QM R+G+ PD ++F        +L+ GLC+      A  +L EM  K  +P   T
Sbjct: 276 YDLLNQMTRKGLTPDVVTF-------TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 328

Query: 300 YFSLIEGIASVDKAAES 316
           Y ++++G    ++  E+
Sbjct: 329 YNTILDGYCRANQLEEA 345



 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/317 (35%), Positives = 174/317 (54%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + +     D  TY S + G+CK  RLE+A   L +M   G  P   TY  +I   C +  
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A  F +EM  + + P   TY +LI  L    ++ EA  +L +M +K  VP ++TYN 
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNS 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+   A +A+ L +EM++ G  P + TYT+LI    K  +  +A ++FE  +A+G
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEA 239
             PD+V ++ LIDG C  G ++ A  L   M +     P+ VTYN+L+ G CR GK++EA
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL++M   G  PD +       TY  L+ G CK    D A +LL +M  KG+TPD  T
Sbjct: 241 MNLLERMAETGSSPDVV-------TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT 293

Query: 300 YFSLIEGIASVDKAAES 316
           + SL++G+   ++ +++
Sbjct: 294 FTSLMDGLCRENRLSDA 310



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 166/310 (53%), Gaps = 10/310 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P + TY S +SG+CK  R  EA  +LE+M  +G +P   TY TLI G+C     + A   
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 172

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILINGYC 126
            +++V +G  P   TY+ LI  L  E ++ EA D+   M + G  +P+++TYN LI+G+C
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 232

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G   +A +L + M   G  P ++TYT+L+    K  R+ +A  L      KG+ PD+V
Sbjct: 233 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVV 292

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F +L+DG C    +  A  +L EM R    P   TYNT++ G CR  ++EEAR+ +  +
Sbjct: 293 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--L 350

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +     P+ +SF       N +I+GLCK      A EL+ E   +   PD   Y ++I+G
Sbjct: 351 EEMDCPPNVVSF-------NIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDG 403

Query: 307 IASVDKAAES 316
           +    K  E+
Sbjct: 404 LCREKKVDEA 413



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 153/294 (52%), Gaps = 14/294 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS    P++ TY S +SG C+ G+++EA  +LE+M E G  P  VTY TL++G+C    
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+   ++M ++G+ P   T+  L+  L  E ++ +A  +L EM  K   P   TYN 
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYCR    ++A     E +     P ++++  +I  L K NR  EA +L E    + 
Sbjct: 332 ILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             PD+VM+  +IDG C    ++ A  + ++M +     P+ +TY+TL+ G C  G ++ A
Sbjct: 390 CNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRA 449

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           R  +++              P   TYN LI    K    + A ELL +MV +G 
Sbjct: 450 RGYIEK-----------GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/317 (36%), Positives = 179/317 (56%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD YTY + +  +C E RL EA + LE+M    L P  VTY  LIDG C  G 
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +M K+ + PTA TYN LI  L    +  EA D+L+EM   G +PD  TY  
Sbjct: 97  VDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+   +  A  + ++++ +G +P ++TY+ LI  L K+ R+ EA  LF   +  G
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 181 -MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             +P+ V +N+LI G C  G ++ A +LL+ M      PD VTY TLM+G C+  ++++A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL+QM R+G+ PD ++F        +L+ GLC+      A  +L EM  K  +P   T
Sbjct: 276 YDLLNQMTRKGLTPDVVTF-------TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 328

Query: 300 YFSLIEGIASVDKAAES 316
           Y ++++G    ++  E+
Sbjct: 329 YNTILDGYCRANQLEEA 345



 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/317 (35%), Positives = 174/317 (54%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + +     D  TY S + G+CK  RLE+A   L +M   G  P   TY  +I   C +  
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A  F +EM  + + P   TY +LI  L    ++ EA  +L +M +K  VP ++TYN 
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNS 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+   A +A+ L +EM++ G  P + TYT+LI    K  +  +A ++FE  +A+G
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEA 239
             PD+V ++ LIDG C  G ++ A  L   M +     P+ VTYN+L+ G CR GK++EA
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL++M   G  PD +       TY  L+ G CK    D A +LL +M  KG+TPD  T
Sbjct: 241 MNLLERMAETGSSPDVV-------TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT 293

Query: 300 YFSLIEGIASVDKAAES 316
           + SL++G+   ++ +++
Sbjct: 294 FTSLMDGLCRENRLSDA 310



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 166/310 (53%), Gaps = 10/310 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P + TY S +SG+CK  R  EA  +LE+M  +G +P   TY TLI G+C     + A   
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 172

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILINGYC 126
            +++V +G  P   TY+ LI  L  E ++ EA D+   M + G  +P+++TYN LI+G+C
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 232

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G   +A +L + M   G  P ++TYT+L+    K  R+ +A  L      KG+ PD+V
Sbjct: 233 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVV 292

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F +L+DG C    +  A  +L EM R    P   TYNT++ G CR  ++EEAR+ +  +
Sbjct: 293 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--L 350

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +     P+ +SF       N +I+GLCK      A EL+ E   +   PD   Y ++I+G
Sbjct: 351 EEMDCPPNVVSF-------NIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDG 403

Query: 307 IASVDKAAES 316
           +    K  E+
Sbjct: 404 LCREKKVDEA 413



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 153/294 (52%), Gaps = 14/294 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS    P++ TY S +SG C+ G+++EA  +LE+M E G  P  VTY TL++G+C    
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+   ++M ++G+ P   T+  L+  L  E ++ +A  +L EM  K   P   TYN 
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYCR    ++A     E +     P ++++  +I  L K NR  EA +L E    + 
Sbjct: 332 ILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             PD+VM+  +IDG C    ++ A  + ++M +     P+ +TY+TL+ G C  G ++ A
Sbjct: 390 CNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRA 449

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           R  +++              P   TYN LI    K    + A ELL +MV +G 
Sbjct: 450 RGYIEK-----------GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 186/344 (54%), Gaps = 34/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   PD  TY S + G C+   L+EA +++E+MKE+GL P  V YN L++G C +  
Sbjct: 153 MLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQ 212

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE      +EMV+ G  P   +YN ++  L    K  EA  +L++M EK   PD +TYN 
Sbjct: 213 LEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNS 272

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A  L ++M+ +   PT++TYT+LI   S+ +R+ +A ++ E+    G
Sbjct: 273 LMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAG 332

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N L+DG C  G +E A  LL+ M      PD VTY+ L++G C+ GKV++AR
Sbjct: 333 ISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDAR 392

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL+ M  RG +P+ ++FN                            P  +TY+ LI G 
Sbjct: 393 LLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGY 452

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK      A  +L      GI+PD  +Y S++EG+ S  K  E+
Sbjct: 453 CKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEA 490



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 171/318 (53%), Gaps = 13/318 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   PD  TY S + G CK  +++EA R+LE M      PT +TY TLI G+     
Sbjct: 258 MIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADR 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+   ++M K GI P   TYN L+  L    K+ EA ++L+ M EK   PD +TY+I
Sbjct: 318 LADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSI 377

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G    A  L + M+ +G QP ++T+ ++I    K  ++ E  ++ E      
Sbjct: 378 LVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS 437

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V ++ LIDG+C    ++ AF++L       + PD+ +Y++++ G C  GKVEEA+
Sbjct: 438 CTPDVVTYSTLIDGYCKANRMQDAFAILG------ISPDKASYSSMLEGLCSTGKVEEAQ 491

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++D M ++G  P       T   Y  +I GLC  + GD A ++L+ M  +G  P+  TY
Sbjct: 492 EVMDLMTKQGCPP-------TSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTY 544

Query: 301 FSLIEGIASVDKAAESSN 318
             LI G+    +  ++ N
Sbjct: 545 SILINGLCKTKRVEDAIN 562



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 183/369 (49%), Gaps = 57/369 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+++Y + V+ +C+ G+ EEA ++LE+M E    P  VTYN+L+DG+C    
Sbjct: 223 MVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSK 282

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++MV +   PT  TY  LI       ++ +A  ++++M + GI PD +TYN 
Sbjct: 283 MDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNC 342

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  ++A  L + M+ K   P ++TY+ L+  L K  ++ +A  L E  L +G
Sbjct: 343 LLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERG 402

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ------- 233
             P++V FN +IDG C  G ++    +L+ M  +   PD VTY+TL+ G C+        
Sbjct: 403 CQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAF 462

Query: 234 ----------------------GKVEEARRLLDQMKRRGIKPDHISF------------- 258
                                 GKVEEA+ ++D M ++G  P    +             
Sbjct: 463 AILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERG 522

Query: 259 ---------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                           P   TY+ LI GLCK +  + A  +L  M+ KG  PD  TY SL
Sbjct: 523 DEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSL 582

Query: 304 IEGIASVDK 312
           I+G   ++K
Sbjct: 583 IDGFCKINK 591



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 11/311 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P + TYG+ ++G  + G  +    +  +M      P  +T+NT++  YC  G+L+ A S
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALS 80

Query: 67  -FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            FR +M      PTA TY +LIH L   +++ EA  +L EM +K   PD+  YN LI G 
Sbjct: 81  HFRGKM---WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGL 137

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G    A ++   M+ +   P ++TYTSLI    + N + EA +L E     G+ PD 
Sbjct: 138 CKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDT 197

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +NAL++G C    +E    LL+EM      PD  +YNT++   C  GK EEA ++L++
Sbjct: 198 VAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEK 257

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +   PD +       TYN+L+ G CK  + D AE LL +MV +   P   TY +LI 
Sbjct: 258 MIEKKCGPDVV-------TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIG 310

Query: 306 GIASVDKAAES 316
           G +  D+ A++
Sbjct: 311 GFSRADRLADA 321



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 170/315 (53%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   PD+  Y   ++G+CK G+++ A  +L+ M E   VP  +TY +LI G C    
Sbjct: 118 MIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNA 177

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M + G+ P    YN L++ L  + ++ E   +L+EM E G  PD+ +YN 
Sbjct: 178 LDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT 237

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C  G  ++A  + ++MI K   P ++TY SL+    K ++M EA++L E+ + + 
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +  LI G      +  A+ ++++M +  + PD VTYN L+ G C+ GK+EEA 
Sbjct: 298 CAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAH 357

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M  +   PD +       TY+ L+ GLCK  + D A  LL  M+ +G  P+  T+
Sbjct: 358 ELLEVMVEKDCAPDVV-------TYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTF 410

Query: 301 FSLIEGIASVDKAAE 315
            ++I+G     K  E
Sbjct: 411 NTMIDGFCKAGKVDE 425



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 168/311 (54%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
             P ++TY   + G+C+  R++EA ++L++M +    P A  YN LI G C  G ++ A 
Sbjct: 88  CSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAAR 147

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +    M+++  +P   TY  LI        + EA  ++++M E G+ PD++ YN L+NG 
Sbjct: 148 NVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGL 207

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+    ++   L +EM+  G +P   +Y +++  L +  +  EA ++ E  + K   PD+
Sbjct: 208 CKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDV 267

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N+L+DG C    ++ A  LL++M   +  P  +TY TL+ G  R  ++ +A R+++ 
Sbjct: 268 VTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMED 327

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M + GI PD +       TYN L+ GLCK  + + A ELL  MV K   PD  TY  L+ 
Sbjct: 328 MFKAGISPDLV-------TYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVN 380

Query: 306 GIASVDKAAES 316
           G+  + K  ++
Sbjct: 381 GLCKLGKVDDA 391



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 161/338 (47%), Gaps = 36/338 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY   + G+CK G+LEEA  +LE M E    P  VTY+ L++G C  G 
Sbjct: 328 MFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGK 387

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M+++G  P   T+N +I       K+ E   +L+ M E    PD +TY+ 
Sbjct: 388 VDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYST 447

Query: 121 LINGYCRCGNAKKAFSL-----------------------------HDEMIHKGIQPTML 151
           LI+GYC+    + AF++                              D M  +G  PT  
Sbjct: 448 LIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSS 507

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            Y  +I  L    R  EA ++ +    +G  P++  ++ LI+G C    +E A ++L  M
Sbjct: 508 HYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVM 567

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                 PD  TY +L+ G C+  K++ A +    M+  G +PD       +L YN LI G
Sbjct: 568 LEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPD-------KLAYNILISG 620

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            C++   + A E+++ M+ KG  PD  TYFSL+  + +
Sbjct: 621 FCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTT 658



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 11/206 (5%)

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           P + TY  LI G+ R GN+K    + +EM+ +   P ++T+ +   +L    ++ + D+ 
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNT---ILKAYCQIGDLDRA 78

Query: 173 FENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
             +F  K    P    +  LI G C    I+ A+ LL EM +   HPD   YN L+ G C
Sbjct: 79  LSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLC 138

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + GK++ AR +L  M  R   PD I       TY +LI G C+    D A +L+ +M   
Sbjct: 139 KMGKIDAARNVLKMMLERSCVPDVI-------TYTSLIVGCCQTNALDEARKLMEKMKES 191

Query: 292 GITPDDNTYFSLIEGIASVDKAAESS 317
           G+TPD   Y +L+ G+   ++  E S
Sbjct: 192 GLTPDTVAYNALLNGLCKQNQLEEVS 217



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 86/163 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P S  Y   + G+C   R +EA +ML+ M E G  P   TY+ LI+G C    
Sbjct: 497 MTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKR 556

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A +  D M+++G +P  +TY  LI       KM  A    K M + G  PD + YNI
Sbjct: 557 VEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNI 616

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           LI+G+C+ GN +KA  +   M+ KG  P   TY SL+  L+ +
Sbjct: 617 LISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           R +E    F    +    P    + ALI G    GN +    +  EM   +  PD +T+N
Sbjct: 4   RPLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHN 63

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           T++   C+ G ++   R L   + +      +  +PT  TY  LI GLC+ Q  D A +L
Sbjct: 64  TILKAYCQIGDLD---RALSHFRGK------MWCSPTAFTYCILIHGLCQCQRIDEAYQL 114

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           L EM+ K   PD   Y  LI G+  + K   + N
Sbjct: 115 LDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARN 148


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 119/315 (37%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G +PD +TY + V+G+CK G  + A  +++ M   GL P   TYN+LI G C  G +E
Sbjct: 301 SEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIE 360

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    D+MV +   P A TYN +I  L  E ++ EA ++ + +  KGI+PD  T+N LI
Sbjct: 361 EAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLI 420

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G C   N K A  L +EM  KG +P   TY  LI  L    ++ EA  L +     G  
Sbjct: 421 QGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCA 480

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            ++V++N LIDG C N  IE A  +  EM+   V  D VTYNTL+ G C+  +VE+A +L
Sbjct: 481 RNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQL 540

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +DQM   G++PD       + TYN+L+   CK  +   A ++++ M S G  PD  TY +
Sbjct: 541 MDQMIMEGLRPD-------KFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYAT 593

Query: 303 LIEGIASVDKAAESS 317
           LI G+    +   +S
Sbjct: 594 LISGLCKAGRVQVAS 608



 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 175/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD  T+ + + G  + G L+ A R+ EQM E G   T VT N LI+G+C +G 
Sbjct: 229 MPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGR 288

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A SF  E V +G  P   TYN L++ L        A +++  M   G+ PD  TYN 
Sbjct: 289 IDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNS 348

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  ++A  + D+M+ +   P  +TY ++I  L K+NR+ EA ++     +KG
Sbjct: 349 LISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKG 408

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+  FN+LI G C + N + A  L +EM      PDE TYN L+   C   K+EEA 
Sbjct: 409 ILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEAL 468

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M+  G   + +        YN LI G CKN+  + AEE+  EM  +G++ D  TY
Sbjct: 469 NLLKEMELNGCARNVV-------IYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTY 521

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI+G+    +  +++ 
Sbjct: 522 NTLIDGLCKSKRVEDAAQ 539



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR   P++ TY + +S +CKE R++EA+ +   +   G++P   T+N+LI G C   N
Sbjct: 369 MVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSN 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EM  +G  P   TYN+LI  L   RK+ EA ++LKEM   G   + + YN 
Sbjct: 429 HKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNT 488

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+    ++A  + DEM  +G+    +TY +LI  L K  R+ +A QL +  + +G
Sbjct: 489 LIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG 548

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +N+L+   C  G+I++A  +++ M     +PD VTY TL+ G C+ G+V+ A 
Sbjct: 549 LRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVAS 608

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL  ++ +G+         T   YN +IQ L K      A  L REM+ K   PD  TY
Sbjct: 609 RLLRSIQMKGMV-------LTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITY 661

Query: 301 FSLIEGIAS 309
             +  G+ +
Sbjct: 662 KIVYRGLCN 670



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 150/318 (47%), Gaps = 42/318 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R ++ D  T+   +  +CK  ++  A  M+E+M   GL P   T+ T++ GY   GN
Sbjct: 194 MVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGN 253

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A   +++MV+ G   T                                    +T N+
Sbjct: 254 LDGALRIKEQMVEYGCPCT-----------------------------------DVTVNV 278

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+ G   +A S   E + +G +P   TY +L+  L K      A ++ +  L  G
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGG 338

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N+LI G C  G IE A  +L +M      P+ VTYN ++   C++ +V+EA 
Sbjct: 339 LDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEAT 398

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   +  +GI PD         T+N+LIQGLC +     A +L  EM  KG  PD+ TY
Sbjct: 399 EIARLLTSKGILPD-------VCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTY 451

Query: 301 FSLIEGIASVDKAAESSN 318
             LI+ + S  K  E+ N
Sbjct: 452 NMLIDSLCSSRKLEEALN 469



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK-ENGLVPTAVTYNTLIDGYCNKG 59
           MK  G + D   +  FV    K    +E   +++ M+ E  + P    YN L++   +  
Sbjct: 123 MKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDAN 182

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L++  S    MV++ I    ST+N+LI  L    ++  A  M++EM   G+ PD  T+ 
Sbjct: 183 KLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFT 242

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            ++ GY   GN   A  + ++M+  G   T +T   LI    KQ R+ +A    +  +++
Sbjct: 243 TIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSE 302

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD   +N L++G C  G+ + A  ++  M    + PD  TYN+L+ G C+ G++EEA
Sbjct: 303 GFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEA 362

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            ++LDQM  R   P+ +       TYNA+I  LCK    D A E+ R + SKGI PD  T
Sbjct: 363 VKILDQMVSRDCSPNAV-------TYNAIISSLCKENRVDEATEIARLLTSKGILPDVCT 415

Query: 300 YFSLIEGIA 308
           + SLI+G+ 
Sbjct: 416 FNSLIQGLC 424



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 143/293 (48%), Gaps = 8/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G +PD +TY   +  +C   +LEEA  +L++M+ NG     V YNTLIDG+C    
Sbjct: 439 MKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKR 498

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM  QG+   + TYN LI  L   +++ +A  ++ +M  +G+ PD  TYN 
Sbjct: 499 IEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNS 558

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  +C+ G+ KKA  +   M   G  P ++TY +LI  L K  R+  A +L  +   KG
Sbjct: 559 LLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKG 618

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M+     +N +I           A  L +EM      PD +TY  +  G C   G + EA
Sbjct: 619 MVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEA 678

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
                +M  RG  P+  SF         L +GLC     D   +L+  ++ K 
Sbjct: 679 VDFTVEMIERGNIPEFSSF-------VMLAEGLCTLSMDDTLVKLVDMIMEKA 724


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G +P+ +TY   + G+CKE +++EA +ML +M E GL+P+ VTYN LIDGYC +G 
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM 384

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   D M      P   TYN LI  L  +RK+ +A  +L +M E+ + P  ITYN 
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + + A+ L   M   G+ P   TY+  I  L K+ R+ EA  LF++  AKG
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++ ALIDG+C  G I+ A+SLL+ M      P+  TYN L+ G C++ K++EA 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M   G+K       PT +TY  LI  + K+   D A ++   MVS G  PD  TY
Sbjct: 565 SLVAKMLTMGVK-------PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 301 FSLIEGIAS 309
            + +    S
Sbjct: 618 TAFLHAYFS 626



 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G Q +  +Y + + G+C+ GR+ EA ++   M E+   PT  TY  LI      G 
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR 314

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  +EM ++G  P   TY +LI  L  E KM EA  ML EM EKG++P  +TYN 
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    AF + D M      P   TY  LI  L K+ ++ +A  L    L + 
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ +N+LI G C   ++E A+ LL  M+   + PD+ TY+  +   C++G+VEEA 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D +K +G+K + +        Y ALI G CK  + D+A  LL  M++    P+  TY
Sbjct: 495 TLFDSVKAKGVKANEV-------IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY 547

Query: 301 FSLIEGIASVDKAAESSN 318
             LIEG+    K  E+S+
Sbjct: 548 NVLIEGLCKEKKMKEASS 565



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 163/311 (52%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+ YT+ + V+G CK G + EA     ++ + GL P   TY +LI G+C    ++ A+
Sbjct: 190 ISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAY 249

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M ++G      +Y  LIH L    ++ EA  +  +M E    P   TY +LI   
Sbjct: 250 EVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYAL 309

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
              G   +A +L +EM  KG +P + TYT LI  L K+N+M EA ++      KG++P +
Sbjct: 310 SGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSV 369

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +NALIDG+C  G I+ AF +L  M+     P+  TYN L+ G C++ KV +A  LL++
Sbjct: 370 VTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNK 429

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  R         +P+ +TYN+LI G CK  + + A  LL  M   G+ PD  TY   I+
Sbjct: 430 MLER-------KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFID 482

Query: 306 GIASVDKAAES 316
            +    +  E+
Sbjct: 483 TLCKEGRVEEA 493



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 164/345 (47%), Gaps = 36/345 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD +TY  F+  +CKEGR+EEA  + + +K  G+    V Y  LIDGYC  G 
Sbjct: 465 MNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK 524

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A+S  + M+    +P + TYN+LI  L  E+KM EA  ++ +M   G+ P  +TY I
Sbjct: 525 IDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTI 584

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI    + G    A  + + M+  G QP + TYT+ +     Q  + E D +      +G
Sbjct: 585 LIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG 644

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V +  LIDG+   G   RAF  LK M      P     + L+     + +++E R
Sbjct: 645 ILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR 704

Query: 241 -----------------------------RLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                                        +L ++M   G   D +S       Y ALI G
Sbjct: 705 SEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTID-VSI------YGALIAG 757

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            C+ +  + A+ L+  M  +G++P ++ Y SL++    +   AE+
Sbjct: 758 FCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEA 802



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S    P++ TY   + G+CK+ ++ +A  +L +M E  L P+ +TYN+LI G C   +
Sbjct: 395 MESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVND 454

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A+     M + G++P   TY++ I  L  E ++ EA  +   +  KG+  + + Y  
Sbjct: 455 LESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTA 514

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    A+SL + M++    P   TY  LI  L K+ +M EA  L    L  G
Sbjct: 515 LIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMG 574

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +  LI     +G  + A  +   M  +   PD  TY   +H    QG +EE  
Sbjct: 575 VKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVD 634

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M   GI PD +       TY  LI G  +      A + L+ MV  G  P     
Sbjct: 635 DVIAKMNEEGILPDLV-------TYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIV 687

Query: 301 FSLIEGIASVDKAAES 316
             LI+ ++  ++  E+
Sbjct: 688 SILIKNLSHENRMKET 703



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 155/305 (50%), Gaps = 7/305 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P    Y + +  + K   ++E   +  ++  N + P   T+N +++GYC  GN+  A  
Sbjct: 156 KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAEL 215

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           +  ++V+ G+ P   TY  LI      + +  A ++   M +KG   + ++Y  LI+G C
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G   +A  L  +M      PT+ TYT LI+ LS   R +EA  LF     KG  P++ 
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LIDG C    ++ A  +L EM    + P  VTYN L+ G C++G +++A  +LD M
Sbjct: 336 TYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM 395

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +     P+      TR TYN LI GLCK ++   A  LL +M+ + ++P   TY SLI G
Sbjct: 396 ESNSCGPN------TR-TYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448

Query: 307 IASVD 311
              V+
Sbjct: 449 QCKVN 453



 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 149/301 (49%), Gaps = 15/301 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+SYTY   + G+CKE +++EAS ++ +M   G+ PT VTY  LI      G  + A   
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKV 601

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            + MV  G  P   TY   +H    +  + E DD++ +M E+GI+PD +TY +LI+GY R
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +AF     M+  G +P++   + LI  LS +NRM E         ++  +  +  
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR-------SEIGIDSVSN 714

Query: 188 FNAL-IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            N++ I         E A  L ++M       D   Y  L+ G C+Q ++EEA+ L+  M
Sbjct: 715 VNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHM 774

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           K RG+       +P+   YN+L+   CK      A  L+  MV  G+ P   +Y  L+ G
Sbjct: 775 KERGM-------SPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCG 827

Query: 307 I 307
           +
Sbjct: 828 L 828



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 129/294 (43%), Gaps = 13/294 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G QPD  TY +F+     +G LEE   ++ +M E G++P  VTY  LIDGY   G 
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF F   MV  G  P+    ++LI  L  E +M E         E GI   S   ++
Sbjct: 665 THRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR------SEIGIDSVSNVNSV 718

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I    +    + A  L ++M+  G    +  Y +LI    +Q R+ EA  L  +   +G
Sbjct: 719 DIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERG 778

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M P   ++N+L+D  C  G    A  L+  M    + P   +Y  L+ G   +G  E+A+
Sbjct: 779 MSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAK 838

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +   +   G       +N   + +  LI GL K    D   EL+  M  K  T
Sbjct: 839 AVFHGLLSCG-------YNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDAT 885


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 176/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+    T+   V G+C+EG+LEEA   LE M E GL P  +TYNTLID  C  GN
Sbjct: 376 MREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGN 435

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   DEMV+ G+     T N L++ L  E++  EA+++L+   ++G VPD ++Y  
Sbjct: 436 VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGT 495

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  Y +    + A  L DEMI + + P++ TY +LI  LS   ++ EA       +  G
Sbjct: 496 VMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMG 555

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N +I  +C  G++E+AF    +M      PD VT NTLM+G C  G++E+A 
Sbjct: 556 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAM 615

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G K D I       TYN LIQ LCK+ + D A     +M  +G+ PD  TY
Sbjct: 616 KLFESWVEKGKKVDVI-------TYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTY 668

Query: 301 FSLIEGIASVDKAAES 316
             L+  ++   ++ E+
Sbjct: 669 NVLLSALSEAGRSVEA 684



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 177/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD+ TY + ++  C++G L EA  +L +MK+ G+VPT  TYNTL+  Y   G 
Sbjct: 235 MQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGW 294

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-PDSITYN 119
           ++ A    + M   G  P   TYN+L   L    K+ EA  +  EM + GIV PD +TYN
Sbjct: 295 IKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYN 354

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++   +C  +  A +L +EM  KG++ +++T+  ++  L ++ ++ EA    E    +
Sbjct: 355 TLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEE 414

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD++ +N LID  C  GN+ +AF L+ EM R  +  D  T NTL++  C++ + EEA
Sbjct: 415 GLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEA 474

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL    +RG  PD +S       Y  ++    K  + + A  L  EM+ + +TP  +T
Sbjct: 475 EELLRAPPQRGFVPDEVS-------YGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSIST 527

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI+G++++ K  E+
Sbjct: 528 YNTLIKGLSTMGKLTEA 544



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 161/302 (53%), Gaps = 8/302 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+ YT+   V   C +G L +A   L +M+  GL P AVTYNTL++ +C KG L  A 
Sbjct: 205 LHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEAR 264

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +    M K+GI+PT +TYN L+        + +A D+++ M   G  PD  TYN+L  G 
Sbjct: 265 TLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGL 324

Query: 126 CRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           C+ G   +AF L DEM   GI  P ++TY +L+    K  R  +A  L E    KG+   
Sbjct: 325 CQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSS 384

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V  N ++ G C  G +E A   L+ M    + PD +TYNTL+   C+ G V +A  L+D
Sbjct: 385 LVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMD 444

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R G+K D         T N L+  LCK +  + AEELLR    +G  PD+ +Y +++
Sbjct: 445 EMVRSGLKMD-------TFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVM 497

Query: 305 EG 306
             
Sbjct: 498 AA 499



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 178/336 (52%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++ D++T  + +  +CKE R EEA  +L    + G VP  V+Y T++  Y  +  
Sbjct: 446 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYK 505

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    DEM+K+ + P+ STYN LI  L    K+ EA D L E+ E G+VPD  TYNI
Sbjct: 506 PEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNI 565

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YC+ G+ +KAF  H++M+    +P ++T  +L+  L    R+ +A +LFE+++ KG
Sbjct: 566 IIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKG 625

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D++ +N LI   C + +++ A     +M+   + PD  TYN L+      G+  EA+
Sbjct: 626 KKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQ 685

Query: 241 RLLDQMKRRG-------------------------IKPDHISFNPTR----LTYNALIQG 271
           ++L ++   G                         +K D  S   T+     +YN  I+ 
Sbjct: 686 KMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKE 745

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LC   +   A+ +L EM+ KG++ D++TY +L+EG+
Sbjct: 746 LCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGL 781



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 138/279 (49%), Gaps = 10/279 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P   TY + + G+   G+L EA   L ++ E GLVP   TYN +I  YC +G+
Sbjct: 516 MIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGD 575

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF F ++MV+    P   T N L++ L +  ++ +A  + +   EKG   D ITYN 
Sbjct: 576 LEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNT 635

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+  +   A     +M  +G+QP + TY  L+  LS+  R +EA ++       G
Sbjct: 636 LIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESG 695

Query: 181 MLPDIVMFNALIDG--HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            L     + ++         G      S ++ +   +   D+ +YN  +   C  G+++E
Sbjct: 696 KLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQ-GDDQESYNKYIKELCIGGQLKE 754

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           A+ +LD+M ++G+  D+        TY  L++GL K Q+
Sbjct: 755 AKAVLDEMMQKGMSVDNS-------TYITLMEGLIKRQK 786



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 32/238 (13%)

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQ 171
           P S   +  ++ Y R      A  L      +G ++P++    +++  L++         
Sbjct: 134 PTSALADAALSTYARLRLPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQAS 193

Query: 172 L--FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           L  F + +A  + P+   FN L+  HC+ G +  A S L +M    + PD VTYNTL++ 
Sbjct: 194 LDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNA 253

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PT 261
            CR+G + EAR LL +MK+ GI P   ++N                            P 
Sbjct: 254 HCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPD 313

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGI-TPDDNTYFSLIEGIASVDKAAESSN 318
             TYN L  GLC+  + D A +L  EM   GI +PD  TY +L++      +++++ N
Sbjct: 314 LWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALN 371


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 179/318 (56%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+P   T+   V  +CKEG+LEEA   LE++ E GL P  +TYNTLID YC  GN
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF+  DEMV +G+     T N +++ L   ++  +A+++L    ++G VPD ++Y  
Sbjct: 435 VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGT 494

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  Y +  N + A  L D+MI + + P++ TY +LI  L +  R+ EA      F+ KG
Sbjct: 495 VMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKG 554

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N +I  +C  G++E AF    +M      PD VT NTLM+G C  GK+++A 
Sbjct: 555 LVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKAL 614

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G K D I       TYN LIQ +CK  + D A     +M  KG+ PD  TY
Sbjct: 615 KLFESWVEKGKKVDVI-------TYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTY 667

Query: 301 FSLIEGIASVDKAAESSN 318
             ++  ++   ++ E+ N
Sbjct: 668 NVVLSALSEAGRSEEAHN 685



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 172/335 (51%), Gaps = 29/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD+ TY + ++  C++G L EA  +L +MK +G+ PT  TYNTL+  +   G 
Sbjct: 234 MQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGW 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI-VPDSITYN 119
           ++ A    + M   G  P   TYN+L   L    K+ EA  +  EM   G  +PD +TYN
Sbjct: 294 IKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYN 353

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++   +   +  A  L +EM  KG++PT++T+  ++  L K+ ++ EA    E    +
Sbjct: 354 TLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEE 413

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD++ +N LID +C  GN+ +AF+L+ EM    +  D  T NT+++  C+  + E+A
Sbjct: 414 GLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDA 473

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             LL    +RG  PD +S+                             P+  TYN LI+G
Sbjct: 474 EELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKG 533

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LC+ +    A + L E V KG+ PD+ TY  +I  
Sbjct: 534 LCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHA 568



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 173/336 (51%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ D++T  + +  +CK  R E+A  +L    + G VP  V+Y T++  Y  + N
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    D+M+++ ++P+ STYN LI  L    ++ EA D L E  EKG+VPD  TYNI
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNI 564

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YC+ G+ + AF  H++M+    +P ++T  +L+  L    ++ +A +LFE+++ KG
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D++ +N LI   C  G+++ A     +M+   + PD  TYN ++      G+ EEA 
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAH 684

Query: 241 RLLDQMKRRG----------IKPDHISFNPTRL-------------------TYNALIQG 271
            +L ++   G          +KP        +                    TY   + G
Sbjct: 685 NMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNG 744

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LC   +   A+ +L EM+ KG+  D +TY +L+EG+
Sbjct: 745 LCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEGL 780



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 137/253 (54%), Gaps = 13/253 (5%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           FR  +++  + P   T+NLL+H    +  + +A   L  M   G+ PD++TYN L+N +C
Sbjct: 196 FR-SLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHC 254

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G   +A +L   M   GI PT  TY +L+   ++   + +A ++ E+  A G  PD+ 
Sbjct: 255 RKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLR 314

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            +N L  G C  G ++ AF L  EM+R+    PD VTYNTL+    +     +A RLL++
Sbjct: 315 TYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDNTYFSL 303
           M+ +G+K       PT +T+N +++ LCK  EG L E L  L ++  +G+ PD  TY +L
Sbjct: 375 MRDKGVK-------PTLVTHNIVVKSLCK--EGKLEEALGKLEKIAEEGLAPDVITYNTL 425

Query: 304 IEGIASVDKAAES 316
           I+        A++
Sbjct: 426 IDAYCKAGNVAKA 438



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 135/278 (48%), Gaps = 8/278 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P   TY + + G+C+  RL+EA   L +  E GLVP   TYN +I  YC +G+
Sbjct: 515 MIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGD 574

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF F ++MV+    P   T N L++ L +  K+ +A  + +   EKG   D ITYN 
Sbjct: 575 LENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNT 634

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ G+   A    D+M  KG+QP   TY  ++  LS+  R  EA  +       G
Sbjct: 635 LIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV-TYNTLMHGRCRQGKVEEA 239
            L        L        +++      +     K   + + TY   ++G C  G+++EA
Sbjct: 695 KLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEA 754

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           + +LD+M ++G+  D         TY  L++GL K Q+
Sbjct: 755 KAVLDEMMQKGMPVDCS-------TYITLMEGLIKRQK 785


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 175/304 (57%), Gaps = 8/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRML-EQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           GV P+ YTY   V  +C  G+ EEA  ++ + M+  G  P  VTYNTL+  +C  G ++ 
Sbjct: 149 GVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDA 208

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A      M + G+ P+  T+N +++ L    +M +A  M  EM  +G+ PD ++YN L++
Sbjct: 209 AERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVS 268

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+ G   +A ++  EM  KG+ P ++T+TSLI  + +   +  A  L      +G+  
Sbjct: 269 GYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRM 328

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +   F ALIDG C NG ++ A   +KEM   ++ P  V YN L++G C+ G+++EAR L+
Sbjct: 329 NEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELI 388

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M+ +G+KPD +       TY+ ++ G CK  + D A EL R+M+ KG+ PD  TY SL
Sbjct: 389 HEMEAKGMKPDVV-------TYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSL 441

Query: 304 IEGI 307
           I G+
Sbjct: 442 IRGL 445



 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 177/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P   T+ + V+G+CK GR+E+A +M ++M   GL P  V+YNTL+ GYC  G 
Sbjct: 216 MREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGC 275

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +   EM ++G++P   T+  LIH +     +  A  ++ +M E+G+  +  T+  
Sbjct: 276 LHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTA 335

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+CR G    A     EM    IQP+++ Y  LI    K  RM EA +L     AKG
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD+V ++ ++ G+C  G+ + AF L ++M +  V PD +TY++L+ G C + ++ +A 
Sbjct: 396 MKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDAC 455

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M + G++PD         TY  LI G CK      A  L  EM+ KG+ PD  TY
Sbjct: 456 ELFEKMLQLGLQPDE-------FTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTY 508

Query: 301 FSLIEGIASVDKAAES 316
             LI+G++   +  E+
Sbjct: 509 SVLIDGLSKSARTKEA 524



 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 115/317 (36%), Positives = 176/317 (55%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD  T+ S +  MC+ G LE A  ++ QM+E GL     T+  LIDG+C  G 
Sbjct: 286 MAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGF 345

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM +  I P+   YN+LI+      +M EA +++ EM  KG+ PD +TY+ 
Sbjct: 346 LDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYST 405

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYC+ G+   AF L+ +M+ KG+ P  +TY+SLI  L ++ R+ +A +LFE  L  G
Sbjct: 406 ILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLG 465

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LIDGHC  GN+++A SL  EM +  V PD VTY+ L+ G  +  + +EA+
Sbjct: 466 LQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQ 525

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI-TPDDNT 299
           RLL ++      PD+I        Y AL+   C+  E      LL+    KG+    D  
Sbjct: 526 RLLFKLYYEDPVPDNIK-------YEALMH-CCRTAEFKSVVALLKGFSMKGLMNQADKV 577

Query: 300 YFSLIEGIASVDKAAES 316
           Y S+++    +D +  S
Sbjct: 578 YQSMLDRHWKLDGSVYS 594



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 174/321 (54%), Gaps = 24/321 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   +QP    Y   ++G CK GR++EA  ++ +M+  G+ P  VTY+T++ GYC  G+
Sbjct: 356 MRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGD 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    +M+K+G++P A TY+ LI  L  ER++ +A ++ ++M + G+ PD  TY  
Sbjct: 416 TDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTT 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN +KA SLHDEMI KG+ P ++TY+ LI  LSK  R  EA +L      + 
Sbjct: 476 LIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYED 535

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK--EMDRMKVHPDEV--------------TYN 224
            +PD + + AL+   C     +   +LLK   M  +    D+V               Y+
Sbjct: 536 PVPDNIKYEALMHC-CRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYS 594

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L+HG CR G + +A     Q+ R G       F+P   +  +L++GL +      A+ +
Sbjct: 595 VLIHGHCRGGNIMKALSFHKQLLRCG-------FSPNSTSTISLVRGLFEEGMTVEADNV 647

Query: 285 LREMVSKGITPDDNTYFSLIE 305
           ++E+++     D  T  +LI+
Sbjct: 648 IQELLNCCSLADAETSKALID 668



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P ++ +NA++    ++ ++  A  LL  M R  V P+  TYN L+   C +G+ EEA
Sbjct: 115 GYAPSLLAYNAVLLA-LSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 240 RRLL-DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
             ++ D M+  G  P+ +       TYN L+   C+  E D AE L+  M   G+ P   
Sbjct: 174 LGVVGDDMRGAGCAPNVV-------TYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLV 226

Query: 299 TYFSLIEGIASVDK 312
           T+ +++ G+    +
Sbjct: 227 TFNTVVNGLCKAGR 240


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G +P+ +TY   + G+CKE +++EA +ML +M E GL+P+ VTYN LIDGYC +G 
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM 384

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   D M      P   TYN LI  L  +RK+ +A  +L +M E+ + P  ITYN 
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + + A+ L   M   G+ P   TY+  I  L K+ R+ EA  LF++  AKG
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++ ALIDG+C  G I+ A+SLL+ M      P+  TYN L+ G C++ K++EA 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M   G+K       PT +TY  LI  + K+   D A ++   MVS G  PD  TY
Sbjct: 565 SLVAKMLTMGVK-------PTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 301 FSLIEGIAS 309
            + +    S
Sbjct: 618 TAFLHAYFS 626



 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G Q +  +Y + + G+C+ GR+ EA ++   M E+   PT  TY  LI      G 
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR 314

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  +EM ++G  P   TY +LI  L  E KM EA  ML EM EKG++P  +TYN 
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    AF + D M      P   TY  LI  L K+ ++ +A  L    L + 
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ +N+LI G C   ++E A+ LL  M+   + PD+ TY+  +   C++G+VEEA 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D +K +G+K + +        Y ALI G CK  + D+A  LL  M++    P+  TY
Sbjct: 495 TLFDSVKAKGVKANEV-------IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY 547

Query: 301 FSLIEGIASVDKAAESSN 318
             LIEG+    K  E+S+
Sbjct: 548 NVLIEGLCKEKKMKEASS 565



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 163/311 (52%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+ YT+ + V+G CK G + EA     ++ + GL P   TY +LI G+C    ++ A+
Sbjct: 190 ISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAY 249

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M ++G      +Y  LIH L    ++ EA  +  +M E    P   TY +LI   
Sbjct: 250 EVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYAL 309

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
              G   +A +L +EM  KG +P + TYT LI  L K+N+M EA ++      KG++P +
Sbjct: 310 SGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSV 369

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +NALIDG+C  G I+ AF +L  M+     P+  TYN L+ G C++ KV +A  LL++
Sbjct: 370 VTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNK 429

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  R         +P+ +TYN+LI G CK  + + A  LL  M   G+ PD  TY   I+
Sbjct: 430 MLER-------KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFID 482

Query: 306 GIASVDKAAES 316
            +    +  E+
Sbjct: 483 TLCKEGRVEEA 493



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 164/334 (49%), Gaps = 25/334 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD +TY  F+  +CKEGR+EEA  + + +K  G+    V Y  LIDGYC  G 
Sbjct: 465 MNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK 524

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A+S  + M+    +P + TYN+LI  L  E+KM EA  ++ +M   G+ P  +TY I
Sbjct: 525 IDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTI 584

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI    + G    A  + + M+  G QP + TYT+ +     Q  + E D +      +G
Sbjct: 585 LIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG 644

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V +  LIDG+   G   RAF  LK M      P     + L+     + +++E R
Sbjct: 645 ILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETR 704

Query: 241 ------------------RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
                             +L ++M   G   D +S       Y ALI G C+ +  + A+
Sbjct: 705 SEIGIDSVSNTLEYEIALKLFEKMVEHGCTID-VSI------YGALIAGFCQQERLEEAQ 757

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            L+  M  +G++P ++ Y SL++    +   AE+
Sbjct: 758 GLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEA 791



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S    P++ TY   + G+CK+ ++ +A  +L +M E  L P+ +TYN+LI G C   +
Sbjct: 395 MESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVND 454

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A+     M + G++P   TY++ I  L  E ++ EA  +   +  KG+  + + Y  
Sbjct: 455 LESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTA 514

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    A+SL + M++    P   TY  LI  L K+ +M EA  L    L  G
Sbjct: 515 LIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMG 574

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +  LI     +G  + A  +   M  +   PD  TY   +H    QG +EE  
Sbjct: 575 VKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVD 634

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M   GI PD +       TY  LI G  +      A + L+ MV  G  P     
Sbjct: 635 DVIAKMNEEGILPDLV-------TYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIV 687

Query: 301 FSLIEGIASVDKAAES 316
             LI+ ++  ++  E+
Sbjct: 688 SILIKNLSHENRMKET 703



 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 155/305 (50%), Gaps = 7/305 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P    Y + +  + K   ++E   +  ++  N + P   T+N +++GYC  GN+  A  
Sbjct: 156 KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAEL 215

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           +  ++V+ G+ P   TY  LI      + +  A ++   M +KG   + ++Y  LI+G C
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G   +A  L  +M      PT+ TYT LI+ LS   R +EA  LF     KG  P++ 
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LIDG C    ++ A  +L EM    + P  VTYN L+ G C++G +++A  +LD M
Sbjct: 336 TYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM 395

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +     P+      TR TYN LI GLCK ++   A  LL +M+ + ++P   TY SLI G
Sbjct: 396 ESNSCGPN------TR-TYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448

Query: 307 IASVD 311
              V+
Sbjct: 449 QCKVN 453



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 137/290 (47%), Gaps = 25/290 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G QPD  TY +F+     +G LEE   ++ +M E G++P  VTY  LIDGY   G 
Sbjct: 605 MVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE------------------ADDM 102
              AF F   MV  G  P+    ++LI  L  E +M E                  A  +
Sbjct: 665 THRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKL 724

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
            ++M E G   D   Y  LI G+C+    ++A  L   M  +G+ P+   Y SL+    K
Sbjct: 725 FEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCK 784

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
                EA +L +  +  G+LP +  +  L+ G    G+ E+A ++   +     + DEV 
Sbjct: 785 LGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVA 844

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
           +  L+ G  ++  V+E   L+D M+ +G +P     NP  LTY+ LI+GL
Sbjct: 845 WKVLIDGLLKRDLVDECSELIDIMEEKGCQP-----NP--LTYSLLIEGL 887


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 181/341 (53%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+R + P  +TY   +SG+C    L++A+ +L+QM  NG+ P    Y TLI  Y  +  
Sbjct: 442 MKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESR 501

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI--------- 111
            EMA      M+  G++P    YN LI  L   +K+ EA  +L +MGEKGI         
Sbjct: 502 YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561

Query: 112 --------------------------VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                     VP+++ Y ILI G+C  GN  +A S    M+ KG
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG 621

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P +  Y+++I  LSK  +  EA  +F  FL  G++PD+ ++N+LI G C  G+IE+A 
Sbjct: 622 LIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKAS 681

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  EM    ++P+ V YNTL++G C+ G+V +AR L D+++ + + PD +       TY
Sbjct: 682 QLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVV-------TY 734

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + +I G CK+     A +L  EM+SKGI+PD   Y  LI+G
Sbjct: 735 STIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDG 775



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 178/316 (56%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P+++TYG+F++   K G ++ A R  + M  +G+VP  V Y  LI G+C+ GN
Sbjct: 547 MGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGN 606

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A S    M+++G++P    Y+ +IH L    K  EA  +  +  + G+VPD   YN 
Sbjct: 607 TVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNS 666

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G+ +KA  L+DEM+H GI P ++ Y +LI  L K   + +A +LF+    K 
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKD 726

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V ++ +IDG+C +GN+  AF L  EM    + PD   Y  L+ G  ++G +E+A 
Sbjct: 727 LVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKAL 786

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  + +++ +         +   +N+LI   CK+ +   A EL  +MV K +TP+  TY
Sbjct: 787 SLFHEAQQKSVG--------SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTY 838

Query: 301 FSLIEGIASVDKAAES 316
             LI+     +   E+
Sbjct: 839 TILIDAYGKAEMMEEA 854



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD +TY   V G CK+ R +EA  + E M  +GL P   TY  LIDG+  +GN
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   +DEM+ +G+     TYN +I  +    +M +A  +  EM   G+ PD+ TYN+
Sbjct: 362 IEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNL 421

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY +  +  KA  L  EM  + + P+  TY+ LI  L   + + +A+++ +  +  G
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNG 481

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++ M+  LI  +      E A  LLK M    V PD   YN L+ G CR  KVEEA+
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAK 541

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M  +GIKP+         TY A I    K+ E  +AE   ++M+S GI P++  Y
Sbjct: 542 MLLVDMGEKGIKPN-------AHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIY 594

Query: 301 FSLIEGIASVDKAAES 316
             LI+G   V    E+
Sbjct: 595 TILIKGHCDVGNTVEA 610



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 166/337 (49%), Gaps = 42/337 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++PD++TY   + G  K   + +A  +L +MK   L P+  TY+ LI G C+  +L+ A
Sbjct: 411 GLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKA 470

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M++ G+ P    Y  LI   + E +   A ++LK M   G++PD   YN LI G
Sbjct: 471 NEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIG 530

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR    ++A  L  +M  KGI+P   TY + I + SK   +  A++ F++ L+ G++P+
Sbjct: 531 LCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPN 590

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEM--------------------------------- 211
            V++  LI GHC  GN   A S  K M                                 
Sbjct: 591 NVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFL 650

Query: 212 --DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
              +  V PD   YN+L+ G C++G +E+A +L D+M   GI       NP  + YN LI
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGI-------NPNIVVYNTLI 703

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            GLCK  E   A EL  E+  K + PD  TY ++I+G
Sbjct: 704 NGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDG 740



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 164/311 (52%), Gaps = 8/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + PD YTY + +   CK G + +   +L +M E    P   TYN  I G C  G ++ A 
Sbjct: 238 IVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEAL 296

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
             +  M+++G+ P   TY LL+     +++  EA  + + M   G+ P+  TY  LI+G+
Sbjct: 297 EVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGF 356

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + GN ++A  + DEMI +G++  ++TY ++I  ++K   M +A  LF   L  G+ PD 
Sbjct: 357 IKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDT 416

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +N LIDG+  + ++ +A  LL EM   K+ P   TY+ L+ G C    +++A  +LDQ
Sbjct: 417 WTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQ 476

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M R G+KP+          Y  LI+   +    ++A ELL+ M++ G+ PD   Y  LI 
Sbjct: 477 MIRNGVKPN-------VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLII 529

Query: 306 GIASVDKAAES 316
           G+    K  E+
Sbjct: 530 GLCRAKKVEEA 540



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 166/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+   Y + ++G+CK G + +A  + ++++E  LVP  VTY+T+IDGYC  GN
Sbjct: 687 MLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGN 746

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF   DEM+ +GI P    Y +LI     E  + +A  +  E  +K +   S  +N 
Sbjct: 747 LTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS-AFNS 805

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ G   +A  L D+M+ K + P ++TYT LI    K   M EA+QLF +   + 
Sbjct: 806 LIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN 865

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ + + +L+  +   GN  +  SL K+M+   +  D + Y  +    C++GK  EA 
Sbjct: 866 IIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEAL 925

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL++    GIK +   F+       ALI  LCK ++     ELL EM  + ++    T 
Sbjct: 926 KLLNKSLVEGIKLEDDVFD-------ALIFHLCKEKQISTVLELLSEMGKEELSLSSKTC 978

Query: 301 FSLIEGIASVDKAAESS 317
            +L+ G        E+S
Sbjct: 979 NTLLLGFYKSGNEDEAS 995



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 167/338 (49%), Gaps = 41/338 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD   Y + +  + K G+ +EA  +  +  + G+VP    YN+LI G+C +G+
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM+  GI P    YN LI+ L    ++ +A ++  E+ EK +VPD +TY+ 
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYST 736

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQP-------------------------------- 148
           +I+GYC+ GN  +AF L DEMI KGI P                                
Sbjct: 737 IIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS 796

Query: 149 --TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
             ++  + SLI    K  ++IEA +LF++ + K + P+IV +  LID +     +E A  
Sbjct: 797 VGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQ 856

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L  +M+   + P+ +TY +L+    + G   +   L   M+ RGI  D I+       Y 
Sbjct: 857 LFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIA-------YG 909

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +    CK  +   A +LL + + +GI  +D+ + +LI
Sbjct: 910 VMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALI 947



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 1/258 (0%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S+G+ PD Y Y   + G  KEG LE+A  +  + ++   V +   +N+LID +C  G 
Sbjct: 757  MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS-VGSLSAFNSLIDSFCKHGK 815

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A    D+MV + + P   TY +LI        M EA+ +  +M  + I+P+++TY  
Sbjct: 816  VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 875

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+  Y + GN  K  SL  +M  +GI    + Y  +     K+ + +EA +L    L +G
Sbjct: 876  LLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 935

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +  +  +F+ALI   C    I     LL EM + ++     T NTL+ G  + G  +EA 
Sbjct: 936  IKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEAS 995

Query: 241  RLLDQMKRRGIKPDHISF 258
            ++L  M+R G  P  +S 
Sbjct: 996  KVLGVMQRLGWVPTSLSL 1013



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV-----------------TYNTLID 53
           ++Y      +C  G + +A  MLE++ +    P  +                  ++  ID
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 54  GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
            +   G L  A S     + +G  PT    N L+ +LL    M     +   M E  IVP
Sbjct: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  TY  +I  +C+ G+  K   +  EM  K  +P + TY + I  L +   + EA ++ 
Sbjct: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVK 299

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           +  + KG+ PD   +  L+DG C     + A  + + M    ++P+  TY  L+ G  ++
Sbjct: 300 KLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE 359

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G +EEA R+ D+M  RG+K + +       TYNA+I G+ K  E   A  L  EM+  G+
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVV-------TYNAMIGGIAKAGEMAKAMSLFNEMLMAGL 412

Query: 294 TPDDNTYFSLIEG 306
            PD  TY  LI+G
Sbjct: 413 EPDTWTYNLLIDG 425



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M++R + P++ TY S +    + G   +   + + M+  G+   A+ Y  +   YC +G 
Sbjct: 861  METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGK 920

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               A    ++ + +GI      ++ LI  L  E+++    ++L EMG++ +   S T N 
Sbjct: 921  SLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 980

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
            L+ G+ + GN  +A  +   M   G  PT L+ T  I
Sbjct: 981  LLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTDSI 1017


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 177/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+    T+   V G+C+EG+LEEA   L+ M E GL P  +TYNTLID YC   N
Sbjct: 377 MRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARN 436

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   DEMV+ G+     T N L++ L  E++  EA+++L+   ++G VPD ++Y  
Sbjct: 437 VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGT 496

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  Y +    + A  L DEM  + + P++ TY +LI  L    ++ EA       + KG
Sbjct: 497 VMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKG 556

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N +I  +C  G++E+AF    +M      PD VT NTLM+G C  GK+E+A 
Sbjct: 557 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAI 616

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G K D I       TYN LIQ LCK+ + D A     +M ++G+ PD  TY
Sbjct: 617 KLFESWAEKGKKVDVI-------TYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTY 669

Query: 301 FSLIEGIASVDKAAESSN 318
             ++  ++   ++ E+ N
Sbjct: 670 NVVLSALSEAGRSEEAQN 687



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 176/336 (52%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++ D++T  + +  +CKE R EEA  +L    + G VP  V+Y T++  Y  +  
Sbjct: 447 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENK 506

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    DEM K+ + P+  TYN LI  L    K+ EA D L E+ +KG+VPD  TYNI
Sbjct: 507 PEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNI 566

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YC+ G+ +KAF  H++M+    +P ++T  +L+  L    ++ +A +LFE++  KG
Sbjct: 567 IIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKG 626

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D++ +N LI   C +G+++ A     +M+   + PD  TYN ++      G+ EEA+
Sbjct: 627 KKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQ 686

Query: 241 RLLDQMKRRGIKPDHISF--------------NPT---------------RLTYNALIQG 271
            +L ++   G   +  S+              +P                + +YN  ++ 
Sbjct: 687 NMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKE 746

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LC   +   A+ +L EM+ KG++ D +TY +L+EG+
Sbjct: 747 LCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGL 782



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 156/302 (51%), Gaps = 8/302 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+ YT+   V   C +G L +A   L  M+  GL P  VTYNTL+  +C KG L  A 
Sbjct: 206 LHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEAR 265

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +    M K+GI PT +TYN L+        + +A ++++ M   G  PD  TYN+L  G 
Sbjct: 266 TLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGL 325

Query: 126 CRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           C+ G   +AF L DEM H  I  P ++TY +L+    K  R  +A  L E    KG+   
Sbjct: 326 CQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSS 385

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V  N ++ G C  G +E A   LK M    + PD +TYNTL+   C+   V +A  L+D
Sbjct: 386 LVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMD 445

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R G+K D         T N L+  LCK +  + AEELLR    +G  PD+ +Y +++
Sbjct: 446 EMVRSGLKMD-------TFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVM 498

Query: 305 EG 306
             
Sbjct: 499 AA 500



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 171/335 (51%), Gaps = 29/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD  TY + +   C++G L EA  +L +MK+ G+ PT  TYNTL+  Y   G 
Sbjct: 236 MQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGW 295

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-PDSITYN 119
           ++ A +  + M   G  P   TYN+L   L    K+ EA  +  EM    IV PD +TYN
Sbjct: 296 IKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYN 355

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++   +   +  A +L +EM  KG++ +++T+  ++  L ++ ++ EA    +    +
Sbjct: 356 TLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEE 415

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD++ +N LID +C   N+ +AF L+ EM R  +  D  T NTL++  C++ + EEA
Sbjct: 416 GLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEA 475

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
             LL    +RG  PD +S+                             P+  TYN LI+G
Sbjct: 476 EELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKG 535

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LC   +   A + L E++ KG+ PDD TY  +I  
Sbjct: 536 LCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHA 570



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 12/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M + G +PD +TY    +G+C+ G+++EA ++ ++M+   +V P  VTYNTL+D      
Sbjct: 306 MTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQ 365

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +  +EM  +G+  +  T+N+++  L  E ++ EA   LK M E+G+ PD ITYN
Sbjct: 366 RSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYN 425

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+ YC+  N  KAF L DEM+  G++    T  +L++ L K+ R  EA++L  +   +
Sbjct: 426 TLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQR 485

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G +PD V +  ++  +      E A  L  EM + K+ P   TYNTL+ G C  GK+ EA
Sbjct: 486 GFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEA 545

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDD 297
              L+++ ++G+ PD         TYN +I   CK  EGDL  A +   +M+     PD 
Sbjct: 546 IDKLNELMKKGLVPDDT-------TYNIIIHAYCK--EGDLEKAFQFHNKMLENYFKPDV 596

Query: 298 NTYFSLIEGI 307
            T  +L+ G+
Sbjct: 597 VTCNTLMNGL 606



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 33/247 (13%)

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
           D+ + +    + P+  T+N+L++ +C  G    A S    M   G+ P ++TY +L+   
Sbjct: 196 DVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAH 255

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            ++  + EA  L      +G+ P    +N L+  +   G I++A ++++ M      PD 
Sbjct: 256 CRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDL 315

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGI-KPDHISFN-------------------- 259
            TYN L  G C+ GKV+EA +L D+M+   I  PD +++N                    
Sbjct: 316 WTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLE 375

Query: 260 --------PTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEGIAS 309
                    + +T+N +++GLC+  EG L E L  L+ M  +G+ PD  TY +LI+    
Sbjct: 376 EMRDKGVKSSLVTHNIVVKGLCR--EGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCK 433

Query: 310 VDKAAES 316
               A++
Sbjct: 434 ARNVAKA 440



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 169 ADQLFENFLAKGML-PDIVMFNALIDG--HCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           A QL  +F  +G + P +   NA++       + + + +  + + +  +++HP+  T+N 
Sbjct: 156 AAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNL 215

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+H  C +G + +A   L  M+  G+ PD +       TYN L++  C+      A  LL
Sbjct: 216 LVHTHCSKGTLADALSTLSTMQGFGLSPDVV-------TYNTLLKAHCRKGMLGEARTLL 268

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             M  +GI P   TY +L+   A +    +++N
Sbjct: 269 ARMKKEGIAPTRATYNTLVSAYARLGWIKQATN 301



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 6/170 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G + D  TY + +  +CK+G ++ A      M+  GL P A TYN ++      G  E 
Sbjct: 625 KGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEE 684

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK---EMGEKGIVPDSITYNI 120
           A +   ++ + G +    +Y L+      E      D  +K   E G      D  +YN 
Sbjct: 685 AQNMLHKLDESGKLSERFSYPLIKSS--AEEVKTGKDPEVKSDCESGGNAKGGDQESYNK 742

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-FVLSKQNRMIEA 169
            +   C  G  K+A ++ DEM+ KG+     TY +L+  ++ +Q R   A
Sbjct: 743 SVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQKRQTHA 792


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 180/344 (52%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PD  ++ S +    + G L++A      MK +GLVP  V Y  LI+GYC  G 
Sbjct: 316 MLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGM 375

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RD+M++QG       YN +++ L  ++ + +A+ +  EM E+G+VPD  T+  
Sbjct: 376 MSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTT 435

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN  KA SL   M  K I+P ++TY  LI    K   M +A++L+   +++ 
Sbjct: 436 LIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRK 495

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  L++G+C  G +  AF L  EM R  + P  VT NT++ G CR G + +A 
Sbjct: 496 IFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKAD 555

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L +M   G+ PD I++N                            P  +TYN ++ G 
Sbjct: 556 EFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGF 615

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C+      AE +LR+M+ +GI PD +TY +LI G  S D   E+
Sbjct: 616 CRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEA 659



 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 170/298 (57%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   D   Y + ++G+CK+  L +A+ + ++M E G+VP   T+ TLI G+C +GN
Sbjct: 386 MLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGN 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    M ++ I P   TYN+LI       +M +A+++  EM  + I P+ I+Y I
Sbjct: 446 MGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAI 505

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC  G   +AF L DEMI KGI+PT++T  ++I    +   + +AD+     +++G
Sbjct: 506 LVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEG 565

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N LI+G      +++AF L+ +M+   + PD VTYN +++G CRQG+++EA 
Sbjct: 566 VGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAE 625

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            +L +M  RGI PD       R TY  LI G         A     EM+ +G  PDD+
Sbjct: 626 LILRKMIERGIDPD-------RSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDDD 676



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 187/379 (49%), Gaps = 66/379 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+  D  TY + ++  C+EG L EA  ++  M   GL PT  TYN +I+G C KG 
Sbjct: 211 MEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGR 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI--------- 111
              A    +EM+  G+ P  +TYN L+ E       +EA D+  +M  +G+         
Sbjct: 271 YVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSS 330

Query: 112 --------------------------VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                     VPD++ Y ILINGYCR G   +A  + D+M+ +G
Sbjct: 331 LIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQG 390

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               ++ Y +++  L K+  + +A+ LF+  + +G++PD   F  LI GHC  GN+ +A 
Sbjct: 391 CALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKAL 450

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
           SL   M +  + PD VTYN L+ G C+  ++E+A  L ++M  R I P+HIS+       
Sbjct: 451 SLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGY 510

Query: 259 ---------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 PT +T N +I+G C++ +   A+E L +M+S+G+ PD 
Sbjct: 511 CNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDS 570

Query: 298 NTYFSLIEGIAS---VDKA 313
            TY +LI G      +DKA
Sbjct: 571 ITYNTLINGFVKGEYMDKA 589



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 178/340 (52%), Gaps = 28/340 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ + YT    V+ +CK+ ++++    L  M++ G+    VTYNTLI+ YC +G L  A
Sbjct: 180 GIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEA 239

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   + M  +G+ PT  TYN +I+ L  + + V A  +  EM   G+ PD+ TYN L+  
Sbjct: 240 FEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVE 299

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR  N  +A  +  +M+H+G+ P +++++SLI V S+   + +A   F +    G++PD
Sbjct: 300 SCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPD 359

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V++  LI+G+C NG +  A  +  +M       D V YNT+++G C++  + +A  L D
Sbjct: 360 NVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFD 419

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M  RG+ PD  +F                             P  +TYN LI G CK  
Sbjct: 420 EMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTT 479

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E + A EL  EM+S+ I P+  +Y  L+ G  ++   +E+
Sbjct: 480 EMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEA 519



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 153/292 (52%), Gaps = 7/292 (2%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           S + G+ K G ++ A  +  ++  +G+     T N +++  C    ++    F  +M ++
Sbjct: 155 SLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQK 214

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           GI     TYN LI+    E  + EA +++  M  KG+ P   TYN +ING C+ G   +A
Sbjct: 215 GIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRA 274

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
             + +EM+  G+ P   TY +L+    + N  +EA  +F + L +G+ PD++ F++LI  
Sbjct: 275 KGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGV 334

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
              NG++++A    ++M    + PD V Y  L++G CR G + EA  + D+M  +G   D
Sbjct: 335 SSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALD 394

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            ++       YN ++ GLCK +    A  L  EMV +G+ PD  T+ +LI G
Sbjct: 395 VVA-------YNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHG 439


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 177/309 (57%), Gaps = 10/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P+  T+ + ++G+CK G+L +A  +++ MK  G  P  VTYNTLIDGYC  G 
Sbjct: 221 MIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGR 280

Query: 61  LEMAF---SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +   +   +   EMV+  + P + T+N+LI     +  +  A  + +EM  +G+ P  +T
Sbjct: 281 VGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVT 340

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN L+NG C  G   +A  L DEM+   ++P ++TY +LI    K+  + EA +LF+N  
Sbjct: 341 YNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIG 400

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ P+++ FN L+ G+C  G +E AF L K M      P+  TYN L+ G CR+GK+E
Sbjct: 401 KQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKME 460

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           E + LL++M+ RG+K D +       TYN LI   C+ +E   A  L+ EM+ KG+ P  
Sbjct: 461 EVKNLLNEMQCRGVKADTV-------TYNILISAWCEKKEPKKAARLIDEMLDKGLKPSH 513

Query: 298 NTYFSLIEG 306
            TY  L+ G
Sbjct: 514 LTYNILLNG 522



 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 177/331 (53%), Gaps = 31/331 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGR---LEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           MK  G  P+  TY + + G CK GR   + +A  +L++M EN + P +VT+N LIDG+C 
Sbjct: 256 MKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCK 315

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
             NL  A    +EM  QG+ PT  TYN L++ L  E K+ EA  +L EM    + P+ IT
Sbjct: 316 DENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVIT 375

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LINGYC+    ++A  L D +  +G+ P ++T+ +L+    K  +M EA  L +  L
Sbjct: 376 YNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVML 435

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG LP+   +N LI G C  G +E   +LL EM    V  D VTYN L+   C + + +
Sbjct: 436 EKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPK 495

Query: 238 EARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALI 269
           +A RL+D+M  +G+KP H+++N                               +TYN LI
Sbjct: 496 KAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLI 555

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           QG C+  + + A  LL EM+ KG+ P+  TY
Sbjct: 556 QGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 168/296 (56%), Gaps = 23/296 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S+G++P   TY S V+G+C EG+L EA  +L++M  + L P  +TYN LI+GYC K  
Sbjct: 329 MQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKL 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    D + KQG+ P   T+N L+H      KM EA  + K M EKG +P++ TYN 
Sbjct: 389 LEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNC 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+CR G  ++  +L +EM  +G++   +TY  LI    ++    +A +L +  L KG
Sbjct: 449 LIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKG 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + +N L++G+C  GN+  A +L K+M++     + VTYN L+ G CR+GK+E+A 
Sbjct: 509 LKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDAN 568

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            LL++M  +G+ P+       R TY                E +  EM+ KG  PD
Sbjct: 569 GLLNEMLEKGLIPN-------RTTY----------------EIIKEEMMEKGFLPD 601



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 142/263 (53%), Gaps = 13/263 (4%)

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +E  +    EM+++ I P   T+N +I+ L    K+ +A D++ +M   G  P+ +TY
Sbjct: 212 GGVEFVYK---EMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTY 268

Query: 119 NILINGYC---RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           N LI+GYC   R G   KA ++  EM+   + P  +T+  LI    K   +  A ++FE 
Sbjct: 269 NTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEE 328

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
             ++G+ P +V +N+L++G C  G +  A  LL EM    + P+ +TYN L++G C++  
Sbjct: 329 MQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKL 388

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +EEAR L D + ++G+ P+ I       T+N L+ G CK  + + A  L + M+ KG  P
Sbjct: 389 LEEARELFDNIGKQGLTPNVI-------TFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLP 441

Query: 296 DDNTYFSLIEGIASVDKAAESSN 318
           + +TY  LI G     K  E  N
Sbjct: 442 NASTYNCLIVGFCREGKMEEVKN 464



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 10/236 (4%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N L+  L+ E +    + + KEM  + I P+ IT+N +ING C+ G   KA  + D+M  
Sbjct: 199 NPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKV 258

Query: 144 KGIQPTMLTYTSLIFVLSKQNR---MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
            G  P ++TY +LI    K  R   M +AD + +  +   + P+ V FN LIDG C + N
Sbjct: 259 WGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDEN 318

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +  A  + +EM    + P  VTYN+L++G C +GK+ EA+ LLD+M    +KP+ I    
Sbjct: 319 LSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVI---- 374

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              TYNALI G CK +  + A EL   +  +G+TP+  T+ +L+ G     K  E+
Sbjct: 375 ---TYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEA 427



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 10/171 (5%)

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           ++L+   L+  L K+N     + +++  + + + P+++ FN +I+G C  G + +A  ++
Sbjct: 194 SVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVV 253

Query: 209 KEMDRMKVHPDEVTYNTLMHGRC---RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +M      P+ VTYNTL+ G C   R GK+ +A  +L +M    + P+ +       T+
Sbjct: 254 DDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSV-------TF 306

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N LI G CK++    A ++  EM S+G+ P   TY SL+ G+ +  K  E+
Sbjct: 307 NVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEA 357


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 172/306 (56%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++P   TY S + G+ + GR ++A  +   M   G+ P   ++N LI G+C  G 
Sbjct: 220 MVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGE 279

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A  F  EM  + + P   +++ LI       +M  A + L+EM E G++PD + Y +
Sbjct: 280 LEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTM 339

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+CR G   +A  + DEM+  G  P ++TY +L+  L K+ R+ +A++L      +G
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  F  LI G+C +GNIE+A      +   ++ PD VTYNTL+ G CRQG + +A 
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKAN 459

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M  R I P+H+       TY+ LI   C+  + D A   L EMV+KGI P+  TY
Sbjct: 460 ELWDDMHSREIFPNHV-------TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTY 512

Query: 301 FSLIEG 306
            S+I+G
Sbjct: 513 NSIIKG 518



 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 184/334 (55%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R V PD  ++   +    + G ++ A+  L +M+E GL+P  V Y  +I G+C  G 
Sbjct: 290 MRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGL 349

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEMV  G +P   TYN L++ L  ER++ +A+++L EM E+G+ PD  T+  
Sbjct: 350 MLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTT 409

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR GN +KA    D +  + ++P ++TY +LI  + +Q  + +A++L+++  ++ 
Sbjct: 410 LIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSRE 469

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V ++ LID HC  G ++ AF+ L EM    + P+ +TYN+++ G CR G V + +
Sbjct: 470 IFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQ 529

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           + L +M+   + PD I++N                            P  +TYN +I G 
Sbjct: 530 QFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGF 589

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +     A+ + ++M ++GI PD  TY S+I G
Sbjct: 590 SVHGNMQEADWVYKKMGARGIEPDRYTYMSMING 623



 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 165/297 (55%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY + ++G+CKE RL +A  +L +MKE G+ P   T+ TLI GYC  GN
Sbjct: 360 MVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGN 419

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F D +  Q + P   TYN LI  +  +  + +A+++  +M  + I P+ +TY+I
Sbjct: 420 IEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSI 479

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C  G    AF+  DEM++KGI P ++TY S+I    +   + +  Q         
Sbjct: 480 LIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDK 539

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD++ +N LI G+   G +  AF+LLK M+   V PD VTYN ++ G    G ++EA 
Sbjct: 540 VMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEAD 599

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            +  +M  RGI+PD       R TY ++I G         + +L  EM+ KG+ PDD
Sbjct: 600 WVYKKMGARGIEPD-------RYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDD 649



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 168/327 (51%), Gaps = 32/327 (9%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++YT    V   CK  +  E   ++ +M++  + P  VT+N ++D     G++E A +  
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALI 217

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D MV +GI P   TYN ++  LL   +  +A ++ + M   G+ PD  ++N+LI G+CR 
Sbjct: 218 DSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRA 277

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  ++A   + EM  + + P +++++ LI + +++  M  A +        G++PD V++
Sbjct: 278 GELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIY 337

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             +I G C  G +  A  +  EM      PD VTYNTL++G C++ ++ +A  LL++MK 
Sbjct: 338 TMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKE 397

Query: 249 RGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDL 280
           RG+ PD  +F                             P  +TYN LI G+C+  +GDL
Sbjct: 398 RGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCR--QGDL 455

Query: 281 --AEELLREMVSKGITPDDNTYFSLIE 305
             A EL  +M S+ I P+  TY  LI+
Sbjct: 456 GKANELWDDMHSREIFPNHVTYSILID 482



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 9/217 (4%)

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFV 159
           D++  +      P    +++LI  Y +    ++AF     ++ H+   P   +   L  +
Sbjct: 75  DIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAAL 134

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
                  + AD  +   L+     +    N ++  +C         +++ EM++  V PD
Sbjct: 135 SRAGWPHLTADA-YRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPD 193

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            VT+N ++  R R G VE A  L+D M  +GIKP  +       TYN++++GL +N   D
Sbjct: 194 VVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLV-------TYNSVLKGLLRNGRWD 246

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A E+ R M + G+ PD  ++  LI G     +  E+
Sbjct: 247 KAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEA 283


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/322 (36%), Positives = 176/322 (54%), Gaps = 14/322 (4%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGL--VPTAVTYNTLIDGYCNKG 59
           KS  V P+  TY SF+ G+CK+    EA  ++  +++  L   P  VT++TLIDG C  G
Sbjct: 136 KSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCG 195

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A S  D+M+  G +P   TYN L++ L    KM  A  M++ M +KG+ PD ITY+
Sbjct: 196 QIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 255

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTML-----TYTSLIFVLSKQNRMIEADQLFE 174
           +L++ +C+     +A  L   M  +G  P +L     T+  LI    K     +A  LFE
Sbjct: 256 VLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFE 315

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             +AK + PD++ F ALIDG C  G +E A  +L  M  + V P+ VTYN L+HG C+ G
Sbjct: 316 EMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 375

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           ++EEA + L++M   G  PD I       TY +L+  LC+    D A +L+ E+ S G  
Sbjct: 376 RIEEACQFLEEMVSSGCVPDSI-------TYGSLVYALCRASRTDDALQLVSELKSFGWD 428

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           PD  TY  L++G+    K  ++
Sbjct: 429 PDTVTYNILVDGLWKSGKTEQA 450



 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 183/338 (54%), Gaps = 37/338 (10%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD+ T+ + + G+CK G+++EA  + + M   G VP  +TYN L++G C    +E A 
Sbjct: 177 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 236

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-----IVPDSITYNI 120
           +  + MV +G+ P   TY++L+       ++ EA ++L  M  +G     +VPD +T+NI
Sbjct: 237 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNI 296

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+ GN ++A +L +EM+ K +QP ++T+ +LI  L K  ++  A  + +     G
Sbjct: 297 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 356

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +NAL+ G C +G IE A   L+EM      PD +TY +L++  CR  + ++A 
Sbjct: 357 VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDAL 416

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +L+ ++K  G  PD +++N                            P   T+ A   GL
Sbjct: 417 QLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGL 476

Query: 273 CKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIA 308
             ++ G+LA   ELLR +++KG+ PD  T  S+++ + 
Sbjct: 477 --HRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVC 512



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 183/388 (47%), Gaps = 72/388 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P   TY + ++G+CK   L     + E++ E G  P  VTYNTLID  C  G+
Sbjct: 28  MARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGD 87

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---------- 110
           LE A     +M  +G +P   TY++LI+ L    ++ EA ++++EM  K           
Sbjct: 88  LEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 147

Query: 111 -----------------------------IVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
                                        + PD++T++ LI+G C+CG   +A S+ D+M
Sbjct: 148 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDM 207

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           I  G  P ++TY +L+  L K ++M  A  + E+ + KG+ PD++ ++ L+D  C    +
Sbjct: 208 IAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRV 267

Query: 202 ERAFSLLKEMDRMKVH-----PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
           + A  LL  M           PD+VT+N L+ G C+ G  E+A  L ++M  + ++PD +
Sbjct: 268 DEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVM 327

Query: 257 SFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREM 288
           +F                             P  +TYNAL+ GLCK+   + A + L EM
Sbjct: 328 TFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEM 387

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAES 316
           VS G  PD  TY SL+  +    +  ++
Sbjct: 388 VSSGCVPDSITYGSLVYALCRASRTDDA 415



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 48/339 (14%)

Query: 13  YGSFVSGMCKEGRLEEASRMLE----QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           Y   +  +C+ G   + +R LE    +M  +G+ PT VTYNT+I+G C   +L       
Sbjct: 4   YNIVLQSLCRAG---DTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           +E+V++G  P   TYN LI  L     + EA  +  +M  +G VP+ +TY++LING C+ 
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 129 GNAKKAFSLHDEMIHKG---------------------------------------IQPT 149
           G   +A  L  EM  K                                        + P 
Sbjct: 121 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPD 180

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
            +T+++LI  L K  ++ EA  +F++ +A G +P+++ +NAL++G C    +ERA ++++
Sbjct: 181 TVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIE 240

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M    V PD +TY+ L+   C+  +V+EA  LL  M  RG  P+ +   P ++T+N LI
Sbjct: 241 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLV--PDKVTFNILI 298

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G CK    + A  L  EMV+K + PD  T+ +LI+G+ 
Sbjct: 299 AGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLC 337



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 132/282 (46%), Gaps = 5/282 (1%)

Query: 1   MKSRGVQP-----DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY 55
           M SRG  P     D  T+   ++G CK G  E+AS + E+M    L P  +T+  LIDG 
Sbjct: 277 MASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 336

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           C  G +E A    D M   G+ P   TYN L+H L    ++ EA   L+EM   G VPDS
Sbjct: 337 CKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDS 396

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           ITY  L+   CR      A  L  E+   G  P  +TY  L+  L K  +  +A  + E 
Sbjct: 397 ITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEE 456

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            + KG  PD   F A   G   +GN+     LL+ +    + PD  T ++++   CR GK
Sbjct: 457 MVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGK 516

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           +++ + ++ + +        +S    R+   +L    C ++E
Sbjct: 517 LDDVKAMIKEFEASSPAAAALSLCAARVEEVSLAGKTCTDEE 558



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 33/228 (14%)

Query: 118 YNILINGYCRCGNAKKAFSL-HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           YNI++   CR G+  +A  +   EM   G+ PT++TY ++I  L K N +    +LFE  
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           + +G  PD+V +N LID  C  G++E A  L  +M      P+ VTY+ L++G C+ G++
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 237 EEARRLLDQMKRRG--IKPDHISFN------------------------------PTRLT 264
           +EAR L+ +M R+   + P+ I++N                              P  +T
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 183

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           ++ LI GLCK  + D A  +  +M++ G  P+  TY +L+ G+   DK
Sbjct: 184 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADK 231


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G+ PD +TY S + G+CK  R +EAS +L +M    ++P  VT+N L+D +C +G 
Sbjct: 259 MKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGK 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P   TY+ L++   +   +VEA  +   M  KG  P+  +YNI
Sbjct: 319 VSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A  L +EMIH+G+ P  ++Y +LI    +  ++ EA  LF N    G
Sbjct: 379 LINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+  ++ L+DG C  G + +AF L + M    + P+ V Y  L+H  C+ G  ++AR
Sbjct: 439 NLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDAR 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  ++  +G++P H+        Y  +I GLCK    D A E  R M + G  PD+ +Y
Sbjct: 499 KLFSELFVQGLQP-HVQL------YTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISY 551

Query: 301 FSLIEGI 307
             +I G+
Sbjct: 552 NVIIRGL 558



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 171/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+ YT   F++  C+  R++    +L ++ + GL PT VT+ TLI+G C  G 
Sbjct: 119 MELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGE 178

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+MV +G  P   TYN +I+ L    +   A  +LK+M E G  P+ +TY+ 
Sbjct: 179 FAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYST 238

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR     +A  +   M  KGI P + TYTSLI  L K +R  EA  L     +  
Sbjct: 239 LIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLN 298

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PDIV FN L+D  C  G +  A  +LK M  M V P+ VTY++LM+G      V EAR
Sbjct: 299 IMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEAR 358

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   M  +G KP+  S       YN LI G CK +  D A +L  EM+ +G+TP++ +Y
Sbjct: 359 KLFHVMITKGCKPNIFS-------YNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSY 411

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI G   + K  E+ +
Sbjct: 412 NTLIHGFCQLGKLREAQD 429



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 176/347 (50%), Gaps = 31/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G QPD YTY + ++G+CK G    A+ +L++M+E G  P  VTY+TLID  C    
Sbjct: 189 MVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRL 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +GI P   TY  LI  L    +  EA  +L EM    I+PD +T+N+
Sbjct: 249 VNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNV 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+ G   +A  +   M   G++P ++TY+SL++  S    ++EA +LF   + KG
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  +N LI+G+C    I+ A  L  EM    + P+ V+YNTL+HG C+ GK+ EA+
Sbjct: 369 CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQ 428

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L   M   G  PD  +++                            P  + Y  L+  +
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAM 488

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAES 316
           CK+     A +L  E+  +G+ P    Y ++I G+     +D+A E+
Sbjct: 489 CKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEA 535



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 129/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+P+  TY S + G      + EA ++   M   G  P   +YN LI+GYC    
Sbjct: 329 MTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKR 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM+ QG+ P   +YN LIH      K+ EA D+ + M   G +PD  TY+I
Sbjct: 389 IDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSI 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G   KAF L   M    ++P ++ YT L+  + K     +A +LF     +G
Sbjct: 449 LLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQG 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P + ++  +I+G C  G ++ A    + M+     PDE++YN ++ G  +      A 
Sbjct: 509 LQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRAL 568

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+ RG   D
Sbjct: 569 LLVGEMRDRGFIAD 582



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 84/185 (45%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++ +Y + + G C+ G+L EA  +   M  NG +P   TY+ L+DG+C +G 
Sbjct: 399 MIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGY 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF     M    + P    Y +L+H +       +A  +  E+  +G+ P    Y  
Sbjct: 459 LGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTT 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A      M   G  P  ++Y  +I  L +      A  L      +G
Sbjct: 519 IINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRG 578

Query: 181 MLPDI 185
            + D+
Sbjct: 579 FIADV 583


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 184/334 (55%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+ YTY S +  +CK G+  EA ++L +M    ++P  V Y TLI G+   G+
Sbjct: 319 MQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGH 378

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  + DEM+ + I P   TY  LI       K++E  ++  EM  +G+ PD +TY  
Sbjct: 379 VRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTT 438

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ G    AFSLH+EM+  G+ P ++TY +LI  L K   +  A++L +    KG
Sbjct: 439 LIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  ++ ++N++++G C  GNIE+A  L+KEM+   + PD +TY T++   CR G +++A 
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LL +M  RG++P  ++FN                            P  +TYN L++  
Sbjct: 559 KLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C     +   ++ + M ++G+ PD NTY  LI+G
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG 652



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 183/312 (58%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+  ++ +Y   +  +C+ G+++EA R+L QM      P  V+Y+T+IDGYC+ G L+ A
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKA 312

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M  +G+ P   TYN +I  L    K  EA+ +L+EM  + I+PD++ Y  LI+G
Sbjct: 313 LKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHG 372

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G+ + A    DEM+ K I P  +TYT+LI    +  ++IE   LF   +++G+ PD
Sbjct: 373 FFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +  LID +C  G +  AFSL  EM +M + P+ VTY  L+ G C+ G+++ A  LLD
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLD 492

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M+++G++ +          YN+++ G+CK    + A +L++EM   GI PD  TY ++I
Sbjct: 493 EMRKKGLQLN-------VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545

Query: 305 EG---IASVDKA 313
           +    +  +DKA
Sbjct: 546 DAYCRLGDIDKA 557



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ + PD  TY + + G  + G++ E   +  +M   GL P  VTY TLID YC  G 
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE 448

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AFS  +EMV+ G+ P   TY  LI  L    ++  A+++L EM +KG+  +   YN 
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNS 508

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ GN ++A  L  EM   GI P  +TYT++I    +   + +A +L +  L +G
Sbjct: 509 MVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRG 568

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V FN L++G C  G +E    LL  M    + PD +TYNTLM   C +  +    
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTT 628

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M+ +G+ PD         TYN LI+G CK +    A  L +EM+ KG  P   +Y
Sbjct: 629 KIYKRMRNQGVAPD-------SNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSY 681

Query: 301 FSLIEGIASVDKAAES 316
            +LI+      K  E+
Sbjct: 682 NALIKRFYKKKKILEA 697



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 157/300 (52%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG++PD  TY + +   CK G +  A  +  +M + G+ P  VTY  LIDG C  G 
Sbjct: 424 MISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    DEM K+G+      YN +++ +     + +A  ++KEM   GI PD+ITY  
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YCR G+  KA  L  EM+ +G+QPT++T+  L+        + + D+L    L KG
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N L+  HC   ++     + K M    V PD  TYN L+ G C+   ++EA 
Sbjct: 604 IVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAW 663

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G       + PT  +YNALI+   K ++   A EL  EM   G+  D   Y
Sbjct: 664 FLYKEMIEKG-------YVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIY 716



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 141/259 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  TYG+ + G+CK G L+ A+ +L++M++ GL      YN++++G C  GN
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM   GI P A TY  +I        + +A  +L+EM ++G+ P  +T+N+
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNV 578

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L   M+ KGI P  +TY +L+     +N M    ++++    +G
Sbjct: 579 LMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG 638

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +N LI GHC   N++ A+ L KEM      P   +YN L+    ++ K+ EAR
Sbjct: 639 VAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEAR 698

Query: 241 RLLDQMKRRGIKPDHISFN 259
            L ++M+  G+  D   +N
Sbjct: 699 ELFEEMRGHGLVADGEIYN 717



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 162/337 (48%), Gaps = 46/337 (13%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG-NLEMAFS 66
           P+   +  F   + + G L EA ++L+++   GLV T  + N  +    N    +EMA  
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIK 247

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
                 + GI    ++YN++I+ L    K+ EA  +L +M  +   PD ++Y+ +I+GYC
Sbjct: 248 V---FCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYC 304

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G  KKA  L D+M  KG++P   TY S+I +L K  +  EA+++    +++ ++PD V
Sbjct: 305 HLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNV 364

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKV------------------------------ 216
           ++  LI G    G++  A     EM   K+                              
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 217 -----HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                 PDEVTY TL+   C+ G++  A  L ++M + G+ P+ +       TY ALI G
Sbjct: 425 ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIV-------TYGALIDG 477

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           LCK+ E D A ELL EM  KG+  +   Y S++ GI 
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGIC 514



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 125/210 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD+ TY + +   C+ G +++A ++L++M + GL PT VT+N L++G+C  G 
Sbjct: 529 MEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGM 588

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE        M+++GI+P A TYN L+ +  +   M     + K M  +G+ PDS TYNI
Sbjct: 589 LEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A+ L+ EMI KG  PT+ +Y +LI    K+ +++EA +LFE     G
Sbjct: 649 LIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHG 708

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++ D  ++N  +D     G++E   +L  E
Sbjct: 709 LVADGEIYNFFVDMCYEEGDVEITLNLCDE 738



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 11/242 (4%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P    +++    L+    + EA  +L ++   G+V    + N  ++   R  N  +   +
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLS---RIANNSEGIEM 244

Query: 138 HDEMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
             ++    GI     +Y  +I+ L +  ++ EA +L      +   PD+V ++ +IDG+C
Sbjct: 245 AIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYC 304

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G +++A  L+ +M    + P+  TYN+++   C+ GK  EA ++L +M  + I PD++
Sbjct: 305 HLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNV 364

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                   Y  LI G  K      A +   EM+SK I+PD  TY +LI+G     K  E 
Sbjct: 365 -------VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 317 SN 318
            N
Sbjct: 418 QN 419



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 81/144 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD+ TY + +   C    +   +++ ++M+  G+ P + TYN LI G+C   N
Sbjct: 599 MLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARN 658

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+    EM+++G +PT ++YN LI     ++K++EA ++ +EM   G+V D   YN 
Sbjct: 659 LKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNF 718

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK 144
            ++     G+ +   +L DE I K
Sbjct: 719 FVDMCYEEGDVEITLNLCDEAIEK 742



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 41/77 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   +Y + +    K+ ++ EA  + E+M+ +GLV     YN  +D    +G+
Sbjct: 669 MIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGD 728

Query: 61  LEMAFSFRDEMVKQGIM 77
           +E+  +  DE +++ ++
Sbjct: 729 VEITLNLCDEAIEKCLL 745


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 184/334 (55%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+ YTY S +  +CK G+  EA ++L +M    ++P  V Y TLI G+   G+
Sbjct: 319 MQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGH 378

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  + DEM+ + I P   TY  LI       K++E  ++  EM  +G+ PD +TY  
Sbjct: 379 VRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTT 438

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ G    AFSLH+EM+  G+ P ++TY +LI  L K   +  A++L +    KG
Sbjct: 439 LIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  ++ ++N++++G C  GNIE+A  L+KEM+   + PD +TY T++   CR G +++A 
Sbjct: 499 LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LL +M  RG++P  ++FN                            P  +TYN L++  
Sbjct: 559 KLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C     +   ++ + M ++G+ PD NTY  LI+G
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKG 652



 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 183/312 (58%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+  ++ +Y   +  +C+ G+++EA R+L QM      P  V+Y+T+IDGYC+ G L+ A
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKA 312

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M  +G+ P   TYN +I  L    K  EA+ +L+EM  + I+PD++ Y  LI+G
Sbjct: 313 LKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHG 372

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G+ + A    DEM+ K I P  +TYT+LI    +  ++IE   LF   +++G+ PD
Sbjct: 373 FFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +  LID +C  G +  AFSL  EM +M + P+ VTY  L+ G C+ G+++ A  LLD
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLD 492

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M+++G++ +          YN+++ G+CK    + A +L++EM   GI PD  TY ++I
Sbjct: 493 EMRKKGLQLN-------VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545

Query: 305 EG---IASVDKA 313
           +    +  +DKA
Sbjct: 546 DAYCRLGDIDKA 557



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ + PD  TY + + G  + G++ E   +  +M   GL P  VTY TLID YC  G 
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGE 448

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AFS  +EMV+ G+ P   TY  LI  L    ++  A+++L EM +KG+  +   YN 
Sbjct: 449 MVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNS 508

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ GN ++A  L  EM   GI P  +TYT++I    +   + +A +L +  L +G
Sbjct: 509 MVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRG 568

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V FN L++G C  G +E    LL  M    + PD +TYNTLM   C +  +    
Sbjct: 569 LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTT 628

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M+ +G+ PD         TYN LI+G CK +    A  L +EM+ KG  P   +Y
Sbjct: 629 KIYKRMRNQGVAPD-------SNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSY 681

Query: 301 FSLIEGIASVDKAAES 316
            +LI+      K  E+
Sbjct: 682 NALIKRFYKKRKFXEA 697



 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 157/300 (52%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG++PD  TY + +   CK G +  A  +  +M + G+ P  VTY  LIDG C  G 
Sbjct: 424 MISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    DEM K+G+      YN +++ +     + +A  ++KEM   GI PD+ITY  
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YCR G+  KA  L  EM+ +G+QPT++T+  L+        + + D+L    L KG
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N L+  HC   ++     + K M    V PD  TYN L+ G C+   ++EA 
Sbjct: 604 IVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAW 663

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G       + PT  +YNALI+   K ++   A EL  EM   G+  D   Y
Sbjct: 664 FLYKEMIEKG-------YVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIY 716



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 140/259 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  TYG+ + G+CK G L+ A+ +L++M++ GL      YN++++G C  GN
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM   GI P A TY  +I        + +A  +L+EM ++G+ P  +T+N+
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNV 578

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L   M+ KGI P  +TY +L+     +N M    ++++    +G
Sbjct: 579 LMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG 638

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +N LI GHC   N++ A+ L KEM      P   +YN L+    ++ K  EAR
Sbjct: 639 VAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEAR 698

Query: 241 RLLDQMKRRGIKPDHISFN 259
            L ++M+  G+  D   +N
Sbjct: 699 ELFEEMRGHGLVADGEIYN 717



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 161/337 (47%), Gaps = 46/337 (13%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG-NLEMAFS 66
           P+   +  F   + + G L EA ++L+++   GLV T  + N  +    N    +EMA  
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIK 247

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
                 + GI    ++YN++I+ L    K+ EA  +L +M  +   PD ++Y+ +I+GYC
Sbjct: 248 V---FCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYC 304

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-------------- 172
             G  KKA  L D+M  KG++P   TY S+I +L K  +  EA+++              
Sbjct: 305 HLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNV 364

Query: 173 ---------------------FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
                                F+  L+K + PD + +  LI G    G +    +L  EM
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
               + PDEVTY TL+   C+ G++  A  L ++M + G+ P+ +       TY ALI G
Sbjct: 425 ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIV-------TYGALIDG 477

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           LCK+ E D A ELL EM  KG+  +   Y S++ GI 
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGIC 514



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 123/210 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD+ TY + +   C+ G +++A ++L++M + GL PT VT+N L++G+C  G 
Sbjct: 529 MEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGM 588

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE        M+++GI+P A TYN L+ +  +   M     + K M  +G+ PDS TYNI
Sbjct: 589 LEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A+ L+ EMI KG  PT+ +Y +LI    K+ +  EA +LFE     G
Sbjct: 649 LIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHG 708

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++ D  ++N  +D     G++E   +L  E
Sbjct: 709 LVADGEIYNFFVDMCYEEGDVEITLNLCDE 738



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 11/242 (4%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P    +++    L+    + EA  +L ++   G+V    + N  ++   R  N  +   +
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLS---RIANNSEGIEM 244

Query: 138 HDEMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
             ++    GI     +Y  +I+ L +  ++ EA +L      +   PD+V ++ +IDG+C
Sbjct: 245 AIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYC 304

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G +++A  L+ +M    + P+  TYN+++   C+ GK  EA ++L +M  + I PD++
Sbjct: 305 HLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNV 364

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                   Y  LI G  K      A +   EM+SK I+PD  TY +LI+G     K  E 
Sbjct: 365 -------VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 317 SN 318
            N
Sbjct: 418 QN 419



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 79/144 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD+ TY + +   C    +   +++ ++M+  G+ P + TYN LI G+C   N
Sbjct: 599 MLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARN 658

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+    EM+++G +PT ++YN LI     +RK  EA ++ +EM   G+V D   YN 
Sbjct: 659 LKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNF 718

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK 144
            ++     G+ +   +L DE I K
Sbjct: 719 FVDMCYEEGDVEITLNLCDEAIEK 742



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 40/77 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   +Y + +    K+ +  EA  + E+M+ +GLV     YN  +D    +G+
Sbjct: 669 MIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGD 728

Query: 61  LEMAFSFRDEMVKQGIM 77
           +E+  +  DE +++ ++
Sbjct: 729 VEITLNLCDEAIEKCLL 745


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 180/344 (52%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P   TY   +   CK G LEEA  ++++M E+G VP  VTYNT++DG C  G 
Sbjct: 71  MNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGR 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM + G  P   ++N +I  L  + K+ +A  +  EM  + I PDS +Y I
Sbjct: 131 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGI 190

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G   +A+ L   M+  GI P+ +TY  +I  +     + EA +LF++  +KG
Sbjct: 191 LIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P    FN LID HC  G ++ AF LLK M      PD VTY+TL+ G C   +V++AR
Sbjct: 251 CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL+ M +R  KP  ++ N                            P  +TYN L+ G 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C+  + + A ELL +MV++G+ P+  TY +L+ G+   ++  E+
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414



 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 172/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++R + PDS++YG  + G+ K G+L EA ++  +M ++G+ P+AVTYN +I G C    
Sbjct: 176 MEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M  +G  P+  T+N+LI       KM EA  +LK M + G VPD +TY+ 
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C       A  L ++M+ +  +PT++T  +LI  L K  R+ EA ++ +  ++ G
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N L+ GHC  G  ERA  LL +M    + P+ VTY  L+ G C+  ++ EA 
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEAC 415

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  QMK  G  P+         TY ALI G C   + D   +L  EMV  GI+PD   Y
Sbjct: 416 GVFAQMKSSGCAPN-------LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVY 468

Query: 301 FSLIEGIASVDKAAES 316
            +L   +    ++A +
Sbjct: 469 GTLAAELCKSGRSARA 484



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 166/312 (53%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+  ++ + + G+C++ ++++A ++  +M+   + P + +Y  LIDG    G 
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGK 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+     M+  GI P+A TYN++IH + +   + EA ++ K M  KG  P   T+NI
Sbjct: 201 LNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNI 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ G   +AF L   M   G  P ++TY++LI  L    R+ +A  L E+ + + 
Sbjct: 261 LIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V  N LI G C  G I+ A  +L  M      PD VTYNTL+HG CR G+ E AR
Sbjct: 321 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M  RG+ P+ +       TY AL+ GLCK      A  +  +M S G  P+  TY
Sbjct: 381 ELLSDMVARGLAPNVV-------TYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 301 FSLIEGIASVDK 312
            +LI G  S  +
Sbjct: 434 TALILGFCSAGQ 445



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PDS++YG  + G+ K G+L +A  + +++  +G+ P+ V Y +LI G C   +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +M ++G  P+  TYN++I        + EA D++K+M E G VPD +TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C+ G  ++A  L +EM   G  P   ++ ++I  L +Q+++ +A Q+F    A+ 
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LIDG    G +  A+ L + M    + P  VTYN ++HG C    ++EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M+ +G +       P+R T+N LI   CK  + D A  LL+ M   G  PD  TY
Sbjct: 241 ELFKSMRSKGCR-------PSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTY 293

Query: 301 FSLIEGIASVDKAAES 316
            +LI G+ S+ +  ++
Sbjct: 294 STLISGLCSIARVDDA 309



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 168/316 (53%), Gaps = 5/316 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S+G +P  +T+   +   CK G+++EA R+L++M ++G VP  VTY+TLI G C+   
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++MVK+   PT  T N LIH L    ++ EA ++L  M   G  PD +TYN 
Sbjct: 306 VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+CR G  ++A  L  +M+ +G+ P ++TYT+L+  L K NR+ EA  +F    + G
Sbjct: 366 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  + ALI G C+ G ++    L  EM    + PD V Y TL    C+ G+   A 
Sbjct: 426 CAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARAL 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L +  R  ++ +          Y   + GL    + ++A   +R+MV  G  P     
Sbjct: 486 EILRE-GRESLRSEAWGDE----VYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERC 540

Query: 301 FSLIEGIASVDKAAES 316
            SL+ G+    +  E+
Sbjct: 541 ASLVAGLCKSGQGGEA 556



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV---TYNTLIDGYCN 57
           M   G+ PD   YG+  + +CK GR   A  +L + +E+ L   A     Y   +DG  +
Sbjct: 456 MVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES-LRSEAWGDEVYRFAVDGLLD 514

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            G +EMA  F  +MV+ G +P       L+  L    +  EA  +L+E+
Sbjct: 515 AGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 178/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+P   T+   V  +CKEG+LEEA   LE++ E GL P  +TYNTLID YC  GN
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF+  DEMV +G+     T N +++ L   ++  +A+++L    ++G VPD ++Y  
Sbjct: 435 VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGT 494

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  Y +  N + A  L D+MI + + P++ TY +LI  L +  R+ EA       + KG
Sbjct: 495 VMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKG 554

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N +I  +C  G++E AF    +M      PD VT NTLM+G C  GK+++A 
Sbjct: 555 LVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKAL 614

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G K D I       TYN LIQ +CK  + D A     +M  KG+ PD  TY
Sbjct: 615 KLFESWVEKGKKVDVI-------TYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTY 667

Query: 301 FSLIEGIASVDKAAESSN 318
             ++  ++   ++ E+ N
Sbjct: 668 NVVLSALSEAGRSEEAHN 685



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 29/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD+ TY + ++  C++G L EA  +L +MK +G+ PT  TYNTL+  +   G 
Sbjct: 234 MQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGW 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIVPDSITYN 119
           ++ A    + M   G  P   TYN+L   L    K+ EA  +  EM      +PD +TYN
Sbjct: 294 IKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYN 353

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++   +   +  A  L +EM  KG++PT++T+  ++  L K+ ++ EA    E    +
Sbjct: 354 TLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEE 413

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD++ +N LID +C  GN+ +AF+L+ EM    +  D  T NT+++  C+  + E+A
Sbjct: 414 GLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDA 473

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             LL    +RG  PD +S+                             P+  TYN LI+G
Sbjct: 474 EELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKG 533

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LC+ +    A + L E+V KG+ PD+ TY  +I  
Sbjct: 534 LCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHA 568



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 174/336 (51%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ D++T  + +  +CK  R E+A  +L    + G VP  V+Y T++  Y  + N
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    D+M+++ ++P+ STYN LI  L    ++ EA D L E+ EKG+VPD  TYNI
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNI 564

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YC+ G+ + AF  H++M+    +P ++T  +L+  L    ++ +A +LFE+++ KG
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D++ +N LI   C  G+++ A     +M+   + PD  TYN ++      G+ EEA 
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAH 684

Query: 241 RLLDQMKRRG----------IKPDHISFNPTRL-------------------TYNALIQG 271
            +L ++   G          +KP        +                    TY   + G
Sbjct: 685 NMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNG 744

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LC   +   A+ +L EM+ KG+  D +TY +L+EG+
Sbjct: 745 LCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGL 780



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 137/253 (54%), Gaps = 13/253 (5%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           FR  +++  + P   T+NLL+H    +  + +A   L  M   G+ PD++TYN L+N +C
Sbjct: 196 FRS-LIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHC 254

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G   +A +L   M   GI PT  TY +L+   ++   + +A ++ E+  A G  PD+ 
Sbjct: 255 RKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLR 314

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            +N L  G C  G ++ AF L  EM+R+    PD VTYNTL+    +     +A RLL++
Sbjct: 315 TYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDNTYFSL 303
           M+ +G+K       PT +T+N +++ LCK  EG L E L  L ++  +G+ PD  TY +L
Sbjct: 375 MRDKGVK-------PTLVTHNIVVKSLCK--EGKLEEALGKLEKIAEEGLAPDVITYNTL 425

Query: 304 IEGIASVDKAAES 316
           I+        A++
Sbjct: 426 IDAYCKAGNVAKA 438



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 8/278 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P   TY + + G+C+  RL+EA   L ++ E GLVP   TYN +I  YC +G+
Sbjct: 515 MIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGD 574

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF F ++MV+    P   T N L++ L +  K+ +A  + +   EKG   D ITYN 
Sbjct: 575 LENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNT 634

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ G+   A    D+M  KG+QP   TY  ++  LS+  R  EA  +       G
Sbjct: 635 LIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV-TYNTLMHGRCRQGKVEEA 239
            L        L        +++      +     K   + + TY   ++G C  G+++EA
Sbjct: 695 KLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEA 754

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           + +LD+M ++G+  D         TY  L++GL K Q+
Sbjct: 755 KAVLDEMMQKGMPVDSS-------TYITLMEGLIKRQK 785


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  218 bits (554), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 183/334 (54%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV P+ YTY   V  +C  G  +EA  +L  M+  G  P AVTYNTL+  +C  G 
Sbjct: 148 MLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGE 207

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M + G+ P   T+N +++ +    +M +A  +  EM ++G+ PD ++YN 
Sbjct: 208 VDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNT 267

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC+ G + +A S+  EM  KGI P ++T+TSLI V+ K   +  A  L      +G
Sbjct: 268 LVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERG 327

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + F ALIDG C  G ++ A   ++EM + ++ P  V YN L++G C  G+++EAR
Sbjct: 328 LQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEAR 387

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M+ +G+KPD ++++                            P  +TY++LI+ L
Sbjct: 388 ELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVL 447

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C+ +    A  L + M+S G+ PD+ TY SLI+G
Sbjct: 448 CEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDG 481



 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 185/317 (58%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  T+ S +  MCK G LE A  ++ +M+E GL    +T+  LIDG+C KG 
Sbjct: 288 MTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGF 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM +  I P+   YN LI+   M  +M EA ++++EM  KG+ PD +TY+ 
Sbjct: 348 LDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYST 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++ YC+ G+   AF L+ +M+  G+ P  +TY+SLI VL ++ R+ +A  LF+N ++ G
Sbjct: 408 ILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLG 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V + +LIDGHC  GN+ERA SL  EM +  V PD VTY+ L++G  +  + +EA+
Sbjct: 468 LQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQ 527

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD-DNT 299
           RLL        K  H    P  + Y+AL++  C+N E      LL+    KG+  + D  
Sbjct: 528 RLL-------FKLYHEEPVPANIKYDALMR-CCRNAELKSVLALLKGFCMKGLMNEADKV 579

Query: 300 YFSLIEGIASVDKAAES 316
           Y S+++   ++D +  S
Sbjct: 580 YQSILDRNWNLDGSVYS 596



 Score =  207 bits (526), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 175/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++P+  T+ S V+G+CK GR+E+A ++ ++M + GL P  V+YNTL+ GYC  G 
Sbjct: 218 MREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGC 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A S   EM ++GIMP   T+  LIH +     +  A  +++EM E+G+  + IT+  
Sbjct: 278 SHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTA 337

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G    A     EM    IQP+++ Y +LI       RM EA +L     AKG
Sbjct: 338 LIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKG 397

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ ++  +C NG+   AF L ++M    V PD +TY++L+   C + ++ +A 
Sbjct: 398 VKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAH 457

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   G++PD +       TY +LI G CK    + A  L  EMV  G+ PD  TY
Sbjct: 458 VLFKNMISLGLQPDEV-------TYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTY 510

Query: 301 FSLIEGIASVDKAAES 316
             LI G++   +  E+
Sbjct: 511 SVLINGLSKSARTKEA 526



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 159/302 (52%), Gaps = 8/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P    Y + +  +  +  L  A R  + M  +G+ P   TYN L+   C +G+ + A
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   +M   G  P A TYN L+       ++  A+ ++  M E G+ P+ +T+N ++NG
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  + A  + DEM+ +G+ P  ++Y +L+    K     EA  +F     KG++PD
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPD 296

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F +LI   C  GN+ERA  L++EM    +  +E+T+  L+ G C++G +++A   + 
Sbjct: 297 VVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVR 356

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M++  I+P  +        YNALI G C     D A EL+REM +KG+ PD  TY +++
Sbjct: 357 EMRQCRIQPSVV-------CYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTIL 409

Query: 305 EG 306
             
Sbjct: 410 SA 411



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 171/321 (53%), Gaps = 24/321 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   +QP    Y + ++G C  GR++EA  ++ +M+  G+ P  VTY+T++  YC  G+
Sbjct: 358 MRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGD 417

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF    +M++ G++P A TY+ LI  L  E+++ +A  + K M   G+ PD +TY  
Sbjct: 418 THSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTS 477

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN ++A SLHDEM+  G+ P ++TY+ LI  LSK  R  EA +L      + 
Sbjct: 478 LIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEE 537

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK---------EMDRM-------KVHPDEVTYN 224
            +P  + ++AL+   C N  ++   +LLK         E D++         + D   Y+
Sbjct: 538 PVPANIKYDALMRC-CRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYS 596

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L+HG CR+G V +A     QM + G       F P   +  +LI+GL +      A+++
Sbjct: 597 VLIHGHCREGNVMKALSFHKQMLQCG-------FAPNSTSTISLIRGLFEKGMVVEADQV 649

Query: 285 LREMVSKGITPDDNTYFSLIE 305
           ++++++     D     +LI+
Sbjct: 650 IQQLLNCCSLADAEASKALID 670



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 124/268 (46%), Gaps = 50/268 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD+ TY S +  +C+E RL +A  + + M   GL P  VTY +LIDG+C +GN
Sbjct: 428 MLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGN 487

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI--------------------HE----------- 89
           +E A S  DEMVK G++P   TY++LI                    HE           
Sbjct: 488 VERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDA 547

Query: 90  -------------------LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                M+  M EAD + + + ++    D   Y++LI+G+CR GN
Sbjct: 548 LMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGN 607

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KA S H +M+  G  P   +  SLI  L ++  ++EADQ+ +  L    L D     A
Sbjct: 608 VMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKA 667

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHP 218
           LID +   GN++    +L  M R  + P
Sbjct: 668 LIDLNLKEGNVDAVLDVLHGMARDGLLP 695



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P ++ +NA++    ++ ++  A      M    V P+  TYN L+   C +G  +EA
Sbjct: 118 GYAPSVLAYNAVLLA-LSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L  M+  G  P+ +       TYN L+   C+  E D AE L+  M   G+ P+  T
Sbjct: 177 LSVLRDMRGAGCDPNAV-------TYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVT 229

Query: 300 YFSLIEGIASVDK 312
           + S++ GI    +
Sbjct: 230 FNSVVNGICKAGR 242



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 66/135 (48%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + + G C +G + EA ++ + + +         Y+ LI G+C +GN+  A SF  +M++ 
Sbjct: 562 ALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQC 621

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G  P +++   LI  L  +  +VEAD +++++     + D+     LI+   + GN    
Sbjct: 622 GFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAV 681

Query: 135 FSLHDEMIHKGIQPT 149
             +   M   G+ P+
Sbjct: 682 LDVLHGMARDGLLPS 696


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 179/344 (52%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P   TY   +   CK G LEEA  ++++M E+G VP  VTYNT++DG C    
Sbjct: 71  MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM + G  P   ++N +I  L  + K+ +A  +  EM  K I PDS +Y I
Sbjct: 131 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGI 190

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G   +A+ L   M+  GI P+ +TY  +I  +     + EA +LF++  +KG
Sbjct: 191 LIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P    FN LID HC  G ++ AF LLK M      PD VTY+TL+ G C   +V++AR
Sbjct: 251 CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL+ M +R  KP  ++ N                            P  +TYN L+ G 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C+  + + A ELL +MV++G+ P+  TY +L+ G+   ++  E+
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414



 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 173/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++ + PDS++YG  + G+ K G+L EA ++ ++M ++G+ P+AVTYN +I G C    
Sbjct: 176 MEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M  +G  P+  T+N+LI       K+ EA  +LK M + G VPD +TY+ 
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C       A  L ++M+ +  +PT++T  +LI  L K  R+ EA ++ +  ++ G
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N L+ GHC  G  ERA  LL +M    + P+ VTY  L+ G C+  ++ EA 
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEAC 415

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  QMK  G  P+         TY ALI G C   + D   +L  EMV  GI+PD   Y
Sbjct: 416 GVFAQMKSSGCAPN-------LFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVY 468

Query: 301 FSLIEGIASVDKAAES 316
            +L   +    ++A +
Sbjct: 469 GTLAAELCKSGRSARA 484



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 166/312 (53%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+  ++ + + G+C++ ++++A ++  +M+   + P + +Y  LIDG    G 
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGK 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+     M+  GI P+A TYN++IH + +   + EA ++ K M  KG  P   T+NI
Sbjct: 201 LNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNI 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ G   +AF L   M   G  P ++TY++LI  L    R+ +A  L E+ + + 
Sbjct: 261 LIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V  N LI G C  G I+ A  +L  M      PD VTYNTL+HG CR G+ E AR
Sbjct: 321 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M  RG+ P+ +       TY AL+ GLCK      A  +  +M S G  P+  TY
Sbjct: 381 ELLSDMVARGLAPNVV-------TYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 301 FSLIEGIASVDK 312
            +LI G  S  +
Sbjct: 434 TALILGFCSAGQ 445



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PDS++YG  + G+ K G+L +A  + +++  +G+ P+ V Y +LI G C   +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +M ++G  P+  TYN++I        + EA D++K+M E G VPD +TYN 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C+    ++A  L +EM   G  P   ++ ++I  L +Q+++ +A Q+F    AK 
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LIDG    G +  A+ L + M    + P  VTYN ++HG C    ++EA 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M+ +G +       P+R T+N LI   CK  + D A  LL+ M   G  PD  TY
Sbjct: 241 ELFKSMRSKGCR-------PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTY 293

Query: 301 FSLIEGIASVDKAAES 316
            +LI G+ S+ +  ++
Sbjct: 294 STLISGLCSIARVDDA 309



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 169/316 (53%), Gaps = 5/316 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S+G +P  +T+   +   CK G+L+EA R+L++M ++G VP  VTY+TLI G C+   
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++MVK+   PT  T N LIH L    ++ EA ++L  M   G  PD +TYN 
Sbjct: 306 VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+CR G  ++A  L  +M+ +G+ P ++TYT+L+  L K NR+ EA  +F    + G
Sbjct: 366 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  + ALI G C+ G ++    L  EM    + PD V Y TL    C+ G+   A 
Sbjct: 426 CAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARAL 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L +  R  ++ +          Y   + GL +  + ++A   +R+MV  G  P     
Sbjct: 486 EILRE-GRESLRSEAWGDE----VYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERC 540

Query: 301 FSLIEGIASVDKAAES 316
            SL+ G+    +  E+
Sbjct: 541 ASLVAGLCKSGQGGEA 556



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV---TYNTLIDGYCN 57
           M   G+ PD   YG+  + +CK GR   A  +L + +E+ L   A     Y   +DG   
Sbjct: 456 MVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES-LRSEAWGDEVYRFAVDGLLE 514

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            G +EMA  F  +MV+ G +P       L+  L    +  EA  +L+E+
Sbjct: 515 AGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 180/308 (58%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +PD  TY   ++G+CKEGRL+EA + L  M   G  P  +T+N ++   C+ G 
Sbjct: 269 MRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGR 328

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++G  P+  T+N+LI+ L  +R +  A D+L++M + G VP+S++YN 
Sbjct: 329 WMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNP 388

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A    + M+ +G  P ++TY +L+  L K  ++  A ++     +KG
Sbjct: 389 LLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKG 448

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  E A  LL+EM R  + PD +TY+TL+ G  R+GKV+EA 
Sbjct: 449 CSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAI 508

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   M       + +S  P+ +TYNA++ GLCK Q+   A + L  MV KG  P + TY
Sbjct: 509 KIFHDM-------EGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATY 561

Query: 301 FSLIEGIA 308
             LIEGIA
Sbjct: 562 TILIEGIA 569



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 172/312 (55%), Gaps = 10/312 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++ G  PD  TY   + G CK G +++A  +LE+M    + P  VTYNT++   C+ G 
Sbjct: 167 LENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGK 223

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D  +++   P   TY +LI     +  + +A  +L EM +KG  PD +TYN+
Sbjct: 224 LKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNV 283

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G   +A    + M   G +P ++T+  ++  +    R ++A++L  + L KG
Sbjct: 284 LINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKG 343

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V FN LI+  C    + RA  +L++M +    P+ ++YN L+HG C++ K++ A 
Sbjct: 344 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAI 403

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L+ M  RG  PD +       TYN L+  LCK+ + D A E+L ++ SKG +P   TY
Sbjct: 404 EYLEIMVSRGCYPDIV-------TYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITY 456

Query: 301 FSLIEGIASVDK 312
            ++I+G+  V K
Sbjct: 457 NTVIDGLTKVGK 468



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 163/311 (52%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD  TY + +  +C  G+L+EA  +L++  +    P  +TY  LI+  CN   +  A 
Sbjct: 204 VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAM 263

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM K+G  P   TYN+LI+ +  E ++ EA   L  M   G  P+ IT+NI++   
Sbjct: 264 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSM 323

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G    A  L  +M+ KG  P+++T+  LI  L ++  +  A  + E     G +P+ 
Sbjct: 324 CSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNS 383

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N L+ G C    ++RA   L+ M     +PD VTYNTL+   C+ GKV+ A  +L+Q
Sbjct: 384 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQ 443

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +  +G        +P  +TYN +I GL K  + + A ELL EM  KG+ PD  TY +L+ 
Sbjct: 444 LSSKGC-------SPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLR 496

Query: 306 GIASVDKAAES 316
           G+    K  E+
Sbjct: 497 GLGREGKVDEA 507



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 152/330 (46%), Gaps = 34/330 (10%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + + G LEE  + LE+M   G +P  +   +LI G+C  G  + A    + +   G +P 
Sbjct: 116 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPD 175

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TYN+LI       K  E D  L+ +    + PD +TYN ++   C  G  K+A  + D
Sbjct: 176 VITYNVLIGGYC---KSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 232

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
             + +   P ++TYT LI      + + +A +L +    KG  PD+V +N LI+G C  G
Sbjct: 233 RQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 292

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A   L  M      P+ +T+N ++   C  G+  +A RLL  M R+G  P  ++FN
Sbjct: 293 RLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFN 352

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P  L+YN L+ G C+ ++ D A E L  MVS+
Sbjct: 353 ILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 412

Query: 292 GITPDDNTYFSLIEGIA---SVDKAAESSN 318
           G  PD  TY +L+  +     VD A E  N
Sbjct: 413 GCYPDIVTYNTLLTALCKDGKVDAAVEILN 442



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 10/233 (4%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N+ + +L+   ++ E    L+ M  +G +PD I    LI G+CR G  KKA  + + + +
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P ++TY  LI    K     E D+  E      + PD+V +N ++   C +G ++ 
Sbjct: 170 SGAVPDVITYNVLIGGYCKSG---EIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKE 226

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  +L    + + +PD +TY  L+   C    V +A +LLD+M+++G KPD +       
Sbjct: 227 AMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVV------- 279

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           TYN LI G+CK    D A + L  M S G  P+  T+  ++  + S  +  ++
Sbjct: 280 TYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDA 332



 Score = 41.6 bits (96), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 31/126 (24%)

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------------- 259
           +E   N  +    R G++EE  + L++M  +G  PD I+                     
Sbjct: 105 EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIM 164

Query: 260 ---------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                    P  +TYN LI G CK+ E D A E+L  M    + PD  TY +++  +   
Sbjct: 165 EILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDS 221

Query: 311 DKAAES 316
            K  E+
Sbjct: 222 GKLKEA 227


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 180/336 (53%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+RG  PD  TY   V G+CKE ++  A  +L +M + G VP  VTYN+L+ G C    
Sbjct: 139 MKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARR 198

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M  +G  P   TY  LI  L    ++ +A  ML +M +KG  PD + YN+
Sbjct: 199 VSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNM 258

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     ++ +L    +  GI+P ++TY+S+I+ L + NR+ EA +L     ++G
Sbjct: 259 LINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG 318

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+++++ LIDG C  G ++ AF L + M       D VTY+TL+ G C+ G+V+EA 
Sbjct: 319 CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAH 378

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL +M R G  P  +++N                            P+ +TYN LI G+
Sbjct: 379 LLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGM 438

Query: 273 CKNQEGDLAE-ELLREMVSKGITPDDNTYFSLIEGI 307
           C+ +  D A  +  +EM+  G+ PD  TY  L+EG+
Sbjct: 439 CRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGL 474



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 171/316 (54%), Gaps = 9/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +P+  TY S + G+CK    + A  + E MK     P+ VTYNTL+DG    G 
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +   EM+ +      S +N+L+  L    K+  A +  ++M ++   P+ ITY++
Sbjct: 61  LERAMALFQEMLDRRSHDVIS-FNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSV 118

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+     +A  L + M  +G  P ++TYT L+  L K++++  A ++    L  G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++V +N+L+ G C    +  A +L+++M      P+ VTY TL+ G C+ G+V++A 
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 238

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  M  +G  PD        + YN LI GLCK  + D +  LLR  VS GI PD  TY
Sbjct: 239 AMLADMIDKGGTPD-------LMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTY 291

Query: 301 FSLIEGIASVDKAAES 316
            S+I G+   ++  E+
Sbjct: 292 SSVIYGLCRSNRLDEA 307



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 158/294 (53%), Gaps = 9/294 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+  TYG+ + G+CK GR+++A  ML  M + G  P  + YN LI+G C    
Sbjct: 209 MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ + +     V  GI P   TY+ +I+ L    ++ EA  +L  +  +G  PD I Y+ 
Sbjct: 269 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYST 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G   +AF L++ M   G    ++TY++LI  L K  R+ EA  L    +  G
Sbjct: 329 LIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 388

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  + +N+LI G C   +++ A  L++EM+R    P  VTYN L+HG CR  +V+ A 
Sbjct: 389 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAA 448

Query: 241 -RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE-GDLAEELLREMVSKG 292
                +M   G+ PDHI       TY+ L++GL K+++  +L   +L +MV  G
Sbjct: 449 LDYFQEMIDNGVIPDHI-------TYSILLEGLKKSKDLHELRHLVLDQMVQLG 495


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  217 bits (552), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 180/312 (57%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  TY + ++G+CK G    A ++L++M+E G  P  V Y+T+ID  C    
Sbjct: 73  MVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKL 132

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  EMV +GI P   TY+ ++H      +  EA  + K+M E+ ++PD++T+NI
Sbjct: 133 ITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNI 192

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G  + G   +A  + + MI KG++P + TY +L+     Q++M EA +LF   + KG
Sbjct: 193 LVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG 252

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +  +N LI GHC +G I+ A  LL EM    + PD VTY+TLM G C+ G+ ++A+
Sbjct: 253 CAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQ 312

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL++M+  G+ PD        +TY+ ++ GLCK    D A ELL+ M    I P+   Y
Sbjct: 313 KLLEEMRSYGLLPD-------LMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIY 365

Query: 301 FSLIEGIASVDK 312
             LI+G+ +  K
Sbjct: 366 TILIQGMCNFGK 377



 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 168/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P+  TY S + G C  GR  EA+ + +QM E  ++P  VT+N L+DG   +G 
Sbjct: 143 MVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGM 202

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M+++G+ P  +TYN L+     + +M EA  +   M  KG  P   +YNI
Sbjct: 203 ILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNI 262

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ G   +A  L  EM HK + P  +TY++L+    +  R  +A +L E   + G
Sbjct: 263 LIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYG 322

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ ++ ++DG C  G+++ AF LLK M   K+ P+   Y  L+ G C  GK+E AR
Sbjct: 323 LLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAR 382

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +GI+PD +       TY  +I GL K    + A EL R+M   G  P+  TY
Sbjct: 383 ELFSNLFVKGIQPDVV-------TYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTY 435

Query: 301 FSLIEGI 307
             +I+G 
Sbjct: 436 NVIIQGF 442



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 184/314 (58%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+QP+  T+ + ++G+  + ++ +A ++ ++M + G  P  +TY+T+I+G C  G+  MA
Sbjct: 42  GLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMA 101

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M ++G  P    Y+ +I  L  ++ + EA + L EM  +GI P+ +TY+ +++G
Sbjct: 102 IQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG 161

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G + +A SL  +M+ + + P  +T+  L+  LSK+  ++EA  +FE  + KG+ P+
Sbjct: 162 FCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPN 221

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +NAL+DG+C+   ++ A  L   M R    P   +YN L+ G C+ G+++EA+ LL 
Sbjct: 222 VNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLA 281

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  + + PD +       TY+ L++G C++     A++LL EM S G+ PD  TY  ++
Sbjct: 282 EMSHKALTPDTV-------TYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVL 334

Query: 305 EGIAS---VDKAAE 315
           +G+     +D+A E
Sbjct: 335 DGLCKQGHLDEAFE 348



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 162/310 (52%), Gaps = 9/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGR--LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           M    ++PD YT    ++  C         A  +L  M + GL P  VT++TL++G  +K
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
             +  A    DEMVK G  P   TY+ +I+ L        A  +LK+M EKG  P+ + Y
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVY 120

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + +I+  C+     +A     EM+++GI P ++TY+S++       R  EA  LF+  + 
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE 180

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           + ++PD V FN L+DG    G I  A  + + M    V P+  TYN LM G C Q +++E
Sbjct: 181 RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDE 240

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A++L + M R+G         P+  +YN LI+G CK+   D A+ LL EM  K +TPD  
Sbjct: 241 AQKLFNIMVRKGCA-------PSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTV 293

Query: 299 TYFSLIEGIA 308
           TY +L++G  
Sbjct: 294 TYSTLMKGFC 303



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 134/258 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P+  TY + + G C + +++EA ++   M   G  P+  +YN LI G+C  G 
Sbjct: 213 MIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGR 272

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM  + + P   TY+ L+     + +  +A  +L+EM   G++PD +TY+I
Sbjct: 273 IDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSI 332

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C+ G+  +AF L   M    I+P +  YT LI  +    ++  A +LF N   KG
Sbjct: 333 VLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKG 392

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +  +I G    G    A  L ++M      P+  TYN ++ G  R G    A 
Sbjct: 393 IQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAG 452

Query: 241 RLLDQMKRRGIKPDHISF 258
           RL+++M  RG   D  +F
Sbjct: 453 RLIEEMVGRGFSADSSTF 470



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 115/226 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   +Y   + G CK GR++EA  +L +M    L P  VTY+TL+ G+C  G 
Sbjct: 248 MVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGR 307

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EM   G++P   TY++++  L  +  + EA ++LK M E  I P+   Y I
Sbjct: 308 PQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTI 367

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G  + A  L   +  KGIQP ++TYT +I  L K     EA +LF +    G
Sbjct: 368 LIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHG 427

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            LP+   +N +I G   NG+   A  L++EM       D  T+  L
Sbjct: 428 CLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 7/218 (3%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A  +L  M + G+ P+ +T++ L+NG         A  L DEM+  G +P ++TY+++I 
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L K      A QL +    KG  P++V+++ +ID  C +  I  A   L EM    + P
Sbjct: 91  GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISP 150

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           + VTY++++HG C  G+  EA  L  QM  R + PD +       T+N L+ GL K    
Sbjct: 151 NVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTV-------TFNILVDGLSKEGMI 203

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             A+ +   M+ KG+ P+ NTY +L++G  S  +  E+
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 100/193 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+ TY + + G C++GR ++A ++LE+M+  GL+P  +TY+ ++DG C +G+
Sbjct: 283 MSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGH 342

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF     M +  I P    Y +LI  +    K+  A ++   +  KGI PD +TY +
Sbjct: 343 LDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTV 402

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G + +A  L  +M   G  P   TY  +I    +      A +L E  + +G
Sbjct: 403 MISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRG 462

Query: 181 MLPDIVMFNALID 193
              D   F  L D
Sbjct: 463 FSADSSTFQMLSD 475



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 9/175 (5%)

Query: 146 IQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           I+P + T T LI  F  S  +    A  +  N    G+ P+ V F+ L++G  +   I  
Sbjct: 6   IRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIID 65

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  L  EM +M   PD +TY+T+++G C+ G    A +LL +M+ +G KP+ +       
Sbjct: 66  AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVV------- 118

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            Y+ +I  LCK++    A E L EMV++GI+P+  TY S++ G  ++ ++ E+++
Sbjct: 119 VYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATS 173


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 172/305 (56%), Gaps = 8/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++P+ YTYG+ + G CK G ++ A R  ++M   G+ P  V    LIDGYC +G+
Sbjct: 542 MIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGS 601

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A S    M+ + + P   TY+ LIH LL   K+  A ++L E  EKG+VPD  TYN 
Sbjct: 602 TTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNS 661

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+ G   KAF LH+ M  KGI P ++TY +LI  L K   +  A +LF+    KG
Sbjct: 662 IISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKG 721

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V +  +IDG+C +GN+ +AF L  EM    V PD   Y+ L+ G  ++G  E+A 
Sbjct: 722 LAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKAL 781

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +  ++G       F  T  + NAL+ G CK+ +   A +LL +MV K + PD  TY
Sbjct: 782 SLFLESVQKG-------FASTS-SLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTY 833

Query: 301 FSLIE 305
             LI+
Sbjct: 834 TILID 838



 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 172/306 (56%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+P++  Y + + G  +EGR +EA R+L+ M + G+ P  + YN++I G C    
Sbjct: 472 MVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRK 531

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  +  EM+++G+ P   TY  LIH      +M  AD   KEM   GI P+ +    
Sbjct: 532 MEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTA 591

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G+  +A S+   M+ + + P + TY++LI  L +  ++  A +L   FL KG
Sbjct: 592 LIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKG 651

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+  +N++I G C  G I +AF L + M +  + P+ +TYN L++G C+ G++E AR
Sbjct: 652 LVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAR 711

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D +  +G+  + +       TY  +I G CK+     A  L  EM  KG+ PD   Y
Sbjct: 712 ELFDGIPGKGLAHNAV-------TYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVY 764

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 765 SALIDG 770



 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 169/306 (55%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   + P +YT G  ++G+C+ G +E+ASR+ E M   G+ P AV Y TLI G+  +G 
Sbjct: 437 MKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGR 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A      M K+G+ P    YN +I  L   RKM EA D L EM E+G+ P+  TY  
Sbjct: 497 FQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGA 556

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  + A     EM+  GI P  +  T+LI    K+    EA  +F   L + 
Sbjct: 557 LIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRS 616

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  ++ALI G   NG ++ A  LL E     + PD  TYN+++ G C+QG + +A 
Sbjct: 617 VHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAF 676

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L + M ++GI P+ I       TYNALI GLCK  E + A EL   +  KG+  +  TY
Sbjct: 677 QLHEYMCQKGISPNII-------TYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTY 729

Query: 301 FSLIEG 306
            ++I+G
Sbjct: 730 ATIIDG 735



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 170/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D +TY   + G  K+ R  EA  MLE+M   GL P  V Y  LIDG+  +G+
Sbjct: 297 MDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGD 356

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF  ++EM+ +G+     TYN L+  +     M +AD +L EM   GI PD+ TYN 
Sbjct: 357 SGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNN 416

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GY +  N  +   L  EM    + PT  T   +I  L +   + +A ++FE  ++ G
Sbjct: 417 MIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLG 476

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++  LI GH   G  + A  +LK MD+  V PD + YN+++ G C+  K+EEA+
Sbjct: 477 VKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAK 536

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M  RG+KP+         TY ALI G CK+ E  +A+   +EM+  GI P+D   
Sbjct: 537 DYLVEMIERGLKPN-------VYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVC 589

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI+G        E+++
Sbjct: 590 TALIDGYCKEGSTTEATS 607



 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 165/308 (53%), Gaps = 12/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD  TY + + G+ + G+L+ A  +L +  E GLVP   TYN++I G+C +G 
Sbjct: 612 MLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGG 671

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   + M ++GI P   TYN LI+ L    ++  A ++   +  KG+  +++TY  
Sbjct: 672 IGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYAT 731

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ GN  KAF L DEM  KG+ P    Y++LI    K+    +A  LF   + KG
Sbjct: 732 IIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKG 791

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                   NAL+DG C +G +  A  LL++M    V PD VTY  L+   C+ G ++EA 
Sbjct: 792 -FASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAE 850

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           +    M++R + P+        LTY AL+ G   N  G  +E   L  EM++K I PD  
Sbjct: 851 QFFVDMQKRNLMPN-------ALTYTALLSGY--NMAGRRSEMFALFDEMIAKDIEPDGV 901

Query: 299 TYFSLIEG 306
           T+  +I+ 
Sbjct: 902 TWSVMIDA 909



 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 174/329 (52%), Gaps = 28/329 (8%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V  D YTY   ++   + G  +E  R+L +M+E G  P+ VTYN +I G C  G ++ AF
Sbjct: 232 VLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAF 291

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
             +  M K+G++    TY++LI     +++  EA  ML+EM  KG+ P  + Y  LI+G+
Sbjct: 292 ELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGF 351

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            R G++ +AF + +EM+ +G++  + TY +L+  + K   M +AD L    +  G+ PD 
Sbjct: 352 MRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDT 411

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +N +I+G+    N  R   LL EM +  + P   T   +++G CR G +E+A R+ + 
Sbjct: 412 QTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEI 471

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
           M   G+KP+ + +                             P  L YN++I GLCK+++
Sbjct: 472 MVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRK 531

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + A++ L EM+ +G+ P+  TY +LI G
Sbjct: 532 MEEAKDYLVEMIERGLKPNVYTYGALIHG 560



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 147/319 (46%), Gaps = 28/319 (8%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            + G  K+G  +EA       K NG V   +  N L+        LE+ + F + M++  
Sbjct: 172 LIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEAN 231

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           ++    TY  LI+         E   +L EM EKG  P  +TYN++I G CR G   +AF
Sbjct: 232 VLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAF 291

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            L   M  KG+   + TY+ LI    KQ R  EA  + E   +KG+ P  V + ALIDG 
Sbjct: 292 ELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGF 351

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
              G+   AF + +EM    V  +  TYN L+ G C+ G +E+A  LL++M   GIKPD 
Sbjct: 352 MRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDT 411

Query: 256 ISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLRE 287
            ++N                            PT  T   +I GLC++   + A  +   
Sbjct: 412 QTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEI 471

Query: 288 MVSKGITPDDNTYFSLIEG 306
           MVS G+ P+   Y +LI+G
Sbjct: 472 MVSLGVKPNAVIYTTLIKG 490



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 133/259 (51%), Gaps = 1/259 (0%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +GV PDS+ Y + + G  KEG  E+A  +  +  + G   T+ + N L+DG+C  G 
Sbjct: 752  MTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTS-SLNALMDGFCKSGK 810

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A    ++MV + + P   TY +LI        + EA+    +M ++ ++P+++TY  
Sbjct: 811  VIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTA 870

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++GY   G   + F+L DEMI K I+P  +T++ +I    K+   ++  +L ++ L KG
Sbjct: 871  LLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKG 930

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                  + + LID  C   ++     +L++++   ++    T +TL+    + GK++ A 
Sbjct: 931  GNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAA 990

Query: 241  RLLDQMKRRGIKPDHISFN 259
            R+L  M R    PD    N
Sbjct: 991  RVLKSMVRFKWVPDSTELN 1009



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 123/290 (42%), Gaps = 63/290 (21%)

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
            V +  LIDGY  KG  + A SF     + G +      N L+ +LL   K+        
Sbjct: 166 GVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYN 225

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
            M E  ++ D  TY  LIN + R GNAK                                
Sbjct: 226 GMLEANVLHDVYTYTHLINAHFRAGNAK-------------------------------- 253

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
              E  +L      KG  P +V +N +I G C  G ++ AF L K MD+  +  D  TY+
Sbjct: 254 ---EGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYS 310

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP------------------------ 260
            L+ G  +Q +  EA+ +L++M  +G+KP H+++                          
Sbjct: 311 ILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLAR 370

Query: 261 ----TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                  TYNAL++G+CK  + + A+ LL EM+  GI PD  TY ++IEG
Sbjct: 371 GVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEG 420



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 115/253 (45%), Gaps = 10/253 (3%)

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD-SITYNILIN 123
           FS  D +V Q IM ++  Y+ ++  L+   K  E D       E     D  + + +LI+
Sbjct: 117 FSRADSVVNQMIMMSSGGYSEILDSLIKSCK--EFDLNNVNGNENSNNNDRGVVFELLID 174

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY + G   +A S        G    +L    L+  L K N++    + +   L   +L 
Sbjct: 175 GYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLH 234

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+  +  LI+ H   GN +    LL EM+     P  VTYN ++ G CR G+V+EA  L 
Sbjct: 235 DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELK 294

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M ++G+  D         TY+ LI G  K +    A+ +L EM SKG+ P    Y +L
Sbjct: 295 KLMDKKGLVAD-------VFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTAL 347

Query: 304 IEGIASVDKAAES 316
           I+G      + E+
Sbjct: 348 IDGFMRQGDSGEA 360



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 105/211 (49%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  + V+PD  TY   +   CK G L+EA +    M++  L+P A+TY  L+ GY   G 
Sbjct: 821  MVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGR 880

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                F+  DEM+ + I P   T++++I   L E   V+   ++ +M +KG        ++
Sbjct: 881  RSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHV 940

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+  CR  +  +   + +++  +G+  ++ T ++L+    K  +M  A ++ ++ +   
Sbjct: 941  LIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFK 1000

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
             +PD    N LI+    + + E A   LK+M
Sbjct: 1001 WVPDSTELNDLINVEQDSTDSENAGDFLKQM 1031


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  216 bits (551), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 178/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD YTY + +   CK   LE A +++E+M+E G     VTYNTLI G C  G 
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF ++ EM   G++P   TY  +I+ L    +  +A  +L EM   G++P+ + Y+ 
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ R GNA +AF +  EM   G+QP  +TY +LI  L K  RM  A ++ +     G
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + D + +N +I+GH    N E AF LL EM +  + P+  TY+ +++G C+ G+ E A 
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERAS 473

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+QM   G+KP+   + P       LI G C+     LA E L++M  + +TPD   Y
Sbjct: 474 GLLEQMIADGLKPNAFVYAP-------LISGYCREGSFSLACETLKKMTRENLTPDLYCY 526

Query: 301 FSLIEGIASVDKAAES 316
            SLI G+++V K  E+
Sbjct: 527 NSLIIGLSNVGKMDEA 542



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 176/319 (55%), Gaps = 7/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD +TYG+ ++G+CK GR ++A  +L++M   GL+P  V Y+TLIDG+  +GN
Sbjct: 304 MEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGN 363

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    EM   G+ P   TY+ LI  L    +M  A  +LK+M + G + D++TYN+
Sbjct: 364 ADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNL 423

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+ R  N ++AF L +EM   GI P + TY+ +I  L +      A  L E  +A G
Sbjct: 424 VIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADG 483

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++  LI G+C  G+   A   LK+M R  + PD   YN+L+ G    GK++EA 
Sbjct: 484 LKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAI 543

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              D+M  +G       F P   TY  LI G       + AE+LL +M++ G+ P+D  Y
Sbjct: 544 EYYDEMLEKG-------FQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIY 596

Query: 301 FSLIEGIASVDKAAESSNS 319
             ++EG    D   + S++
Sbjct: 597 AQILEGYFKSDNLEKVSST 615



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 170/306 (55%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+ YTY   ++G+C+ G  E AS +LEQM  +GL P A  Y  LI GYC +G+
Sbjct: 444 MRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGS 503

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A     +M ++ + P    YN LI  L    KM EA +   EM EKG  P+  TY  
Sbjct: 504 FSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGG 563

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY   GN +KA  L  +M++ G+ P    Y  ++    K + + +     ++ L KG
Sbjct: 564 LIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKG 623

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD  ++  +I    ++G+++ A S+L  +++  + PD + Y +L+ G C+   +E+A 
Sbjct: 624 LMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAV 683

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD+M ++GI+P  IS       YNALI G CK+ +   A  +   ++ KG+ P+  TY
Sbjct: 684 GLLDEMAKKGIEPG-IS------CYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTY 736

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 737 TTLIDG 742



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 173/346 (50%), Gaps = 28/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQP+  TY + + G+CK GR+  ASR+L+QM + G +   +TYN +I+G+  + N
Sbjct: 374 MSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHN 433

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E AF   +EM K GI P   TY+++I+ L    +   A  +L++M   G+ P++  Y  
Sbjct: 434 KEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAP 493

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR G+   A     +M  + + P +  Y SLI  LS   +M EA + ++  L KG
Sbjct: 494 LISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKG 553

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +  LI G+   GN+E+A  LL +M    ++P++  Y  ++ G  +   +E+  
Sbjct: 554 FQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVS 613

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L  M  +G+ PD+  +                             P  L Y +LI G 
Sbjct: 614 STLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGF 673

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           CK  + + A  LL EM  KGI P  + Y +LI+G    D  + + N
Sbjct: 674 CKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARN 719



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 163/316 (51%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QP+ +TYG  + G    G LE+A ++L QM  +GL P    Y  +++GY    N
Sbjct: 549 MLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDN 608

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE   S    M+++G+MP    Y ++IH L     M  A  +L  + + G+VPDS+ Y  
Sbjct: 609 LEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGS 668

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+  + +KA  L DEM  KGI+P +  Y +LI    K + +  A  +F + + KG
Sbjct: 669 LISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKG 728

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  LIDG+C  G+I  A  L  EM    V PD   Y+ L  G    G +++A 
Sbjct: 729 LPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQAL 788

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + ++M  RG     IS      ++N L+ G CK  +     + L  M+ K I P   T 
Sbjct: 789 FITEEMIARGYA--IIS------SFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTV 840

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+    K +E+
Sbjct: 841 ENIVIGLGEAGKLSEA 856



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 155/313 (49%), Gaps = 28/313 (8%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           K GR+ + + ++  MK+ GL P+    N L+        L++ +  R  M   GI P   
Sbjct: 185 KTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVY 244

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TY+ LI      R +  A  +++EM E G   + +TYN LI G CR G  ++AF    EM
Sbjct: 245 TYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEM 304

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
              G+ P   TY ++I  L K+ R  +A  L +     G++P++V+++ LIDG    GN 
Sbjct: 305 EDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNA 364

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-- 259
           + AF ++KEM    V P+++TY+ L+ G C+ G++  A R+L QM + G   D +++N  
Sbjct: 365 DEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLV 424

Query: 260 --------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
                                     P   TY+ +I GLC+  E + A  LL +M++ G+
Sbjct: 425 IEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGL 484

Query: 294 TPDDNTYFSLIEG 306
            P+   Y  LI G
Sbjct: 485 KPNAFVYAPLISG 497



 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 163/353 (46%), Gaps = 47/353 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++P+++ Y   +SG C+EG    A   L++M    L P    YN+LI G  N G 
Sbjct: 479 MIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGK 538

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML----------------- 103
           ++ A  + DEM+++G  P   TY  LIH   M   + +A+ +L                 
Sbjct: 539 MDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQ 598

Query: 104 ------------------KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                             K M EKG++PD+  Y I+I+     G+ + A S+   +   G
Sbjct: 599 ILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNG 658

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  L Y SLI    K   M +A  L +    KG+ P I  +NALIDG C + +I  A 
Sbjct: 659 LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHAR 718

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           ++   +    + P+ VTY TL+ G C+ G + +A  L ++M   G+ PD          Y
Sbjct: 719 NIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPD-------AFVY 771

Query: 266 NALIQGLCKNQEGDLAEELL--REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + L  G C N  GDL + L    EM+++G     +++ +L+ G     K  E+
Sbjct: 772 SVLAAG-CSNS-GDLQQALFITEEMIARGYA-IISSFNTLVHGFCKRGKLQET 821



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 15/305 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD+  YG  +  +   G ++ A  +L  +++NGLVP ++ Y +LI G+C   +
Sbjct: 619 MLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAAD 678

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM K+GI P  S YN LI        +  A ++   +  KG+ P+ +TY  
Sbjct: 679 MEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTT 738

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G+ + A  L++EM+ +G+ P    Y+ L    S    + +A  + E  +A+G
Sbjct: 739 LIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARG 798

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I  FN L+ G C  G ++     L  M    + P  +T   ++ G    GK+ EA 
Sbjct: 799 Y-AIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAH 857

Query: 241 RLLDQMKRRGIK---PDHIS----------FNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
            +  +++++       DH+S            P  + +N +IQ  CK    D A  L   
Sbjct: 858 TIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLDVIHN-MIQSHCKQGYLDKALMLHDA 916

Query: 288 MVSKG 292
           +V+KG
Sbjct: 917 LVAKG 921


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 173/342 (50%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ PD  TY S ++G CK G L+EA  +   +K  GL P+ +TYN L+DGYC  G+
Sbjct: 363 MRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLL------IHELLMERKMV----------------- 97
           LE A  F+ EMV+QG  P  STY +L      +  L M R+                   
Sbjct: 423 LEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNT 482

Query: 98  ------------EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                       EA  + + M  +GI  D++TYNI ++G C+ GN K A+ L  +M+  G
Sbjct: 483 RISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDG 542

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +QP  +TYT LI    ++ R+ EA  +F+  L  G+ P  V +   I  +C  GN+  A+
Sbjct: 543 LQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAY 602

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
              ++M    V P+EVTYN L+H  CR G+   A +   +M  RG+ P+       + TY
Sbjct: 603 GWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPN-------KYTY 655

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             LI G CK    + A  L  EM   GI PD  T+ +L +G 
Sbjct: 656 TLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGF 697



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 168/334 (50%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P   TY + + GM + G +E A     +M+  GL+P  +TYN+LI+GYC  GN
Sbjct: 328 MENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGN 387

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     ++ + G+ P+  TYN+L+        + EA    +EM E+G  PD  TY I
Sbjct: 388 LKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTI 447

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG  +  N        DEM+ KG+QP    Y + I          EA QL E  +++G
Sbjct: 448 LMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRG 507

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V +N  +DG C +GN++ A+ L  +M    + PD +TY  L+H  C +G++ EAR
Sbjct: 508 ISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREAR 567

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            + D M   G+ P  +++                             P  +TYN LI  L
Sbjct: 568 DIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHAL 627

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C+    +LA +   EM+ +G++P+  TY  LI+G
Sbjct: 628 CRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDG 661



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P        +  +  E R ++   +  +M + G+ P+ VTYNTL+D +  +G 
Sbjct: 187 MAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGR 246

Query: 61  LEMAFSFRDEMVKQ--GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           ++ A     EM  +  G +P+  TYN++I+ L  + ++ +A  ++  M        + T+
Sbjct: 247 VDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAFTF 305

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N LI GY   G+ +KA +L  EM ++GI PT++TY ++I  + +   +  A   F    A
Sbjct: 306 NPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRA 365

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+LPD++ +N+LI+G+C  GN++ A  L  ++ R  + P  +TYN L+ G CR G +EE
Sbjct: 366 MGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEE 425

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           ARR   +M  +G +PD +S      TY  L+ G  K +   +  E   EM+SKG+ PD  
Sbjct: 426 ARRFKQEMVEQGCQPD-VS------TYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCF 478

Query: 299 TYFSLIEG 306
            Y + I  
Sbjct: 479 AYNTRISA 486



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 144/284 (50%), Gaps = 10/284 (3%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
             +M  +G+ P     N ++    ++   +   S   EM++ GI P+  TYN L+     
Sbjct: 184 FREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFR 243

Query: 93  ERKMVEADDMLKEMGEK--GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
           E ++ +A  +L+EM  +  G +P  +TYN++ING  R G  +KA  L D M     + + 
Sbjct: 244 EGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKASA 302

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            T+  LI     +  + +A  L      +G++P +V +N +I G   +GN+E A     E
Sbjct: 303 FTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVE 362

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M  M + PD +TYN+L++G C+ G ++EA  L   +KR G+ P       + LTYN L+ 
Sbjct: 363 MRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAP-------SVLTYNILLD 415

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
           G C+  + + A    +EMV +G  PD +TY  L+ G   V   A
Sbjct: 416 GYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLA 459



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+ YTY   + G CKEG  EEA R+  +M ++G+ P   T+N L  G+ ++G 
Sbjct: 643 MLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGF-DEGQ 701

Query: 61  LEMAFSFRDEMV 72
            + A  + + +V
Sbjct: 702 SKHAIQYMENVV 713


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 188/343 (54%), Gaps = 31/343 (9%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RGV P+ +T+  F+ G+C++G ++EA+R+LE +   GL P  ++YNTLI G+C    L  
Sbjct: 245 RGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVE 304

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +  +MV  G+ P   TYN +I+       M  AD +L++   KG +PD  TY+ LIN
Sbjct: 305 AECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G+  +A ++  E + KG + +++ Y +L+  LSKQ  +++A QL ++ +  G  P
Sbjct: 365 GLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSP 424

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +++G C  G +  A  +L +       PD  T+NTL+ G C+Q  +++A  +L
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
           D M   GI PD I++N                            P  +TYN LI+  CK+
Sbjct: 485 DTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKD 544

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           ++   A EL +EM ++G+TPD  T  +LI G+ S   +DKA E
Sbjct: 545 RKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 164/312 (52%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  T+   +  +CK+G ++E+ ++  ++ + G+ P   T+N  I G C KG 
Sbjct: 207 MLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGA 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + +V +G+ P   +YN LI       K+VEA+  L +M   G+ P+  TYN 
Sbjct: 267 IDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNT 326

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G  + A  +  + + KG  P   TY+SLI  L     M  A  +F   + KG
Sbjct: 327 IINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKG 386

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I+++N L+ G    G + +A  L+K+M      PD  TYN +++G C+ G + +A 
Sbjct: 387 FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDAN 446

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L+    +G  PD         T+N LI G CK +  D A E+L  M+S GITPD  TY
Sbjct: 447 GILNDAIAKGCIPD-------IFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 301 FSLIEGIASVDK 312
            +L+ G+    K
Sbjct: 500 NTLLNGLCKARK 511



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 154/285 (54%), Gaps = 7/285 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV+P+ +TY + ++G CK G ++ A ++L      G +P   TY++LI+G CN G+
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGD 371

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   E +++G   +   YN L+  L  +  +++A  ++K+M E G  PD  TYN+
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G    A  + ++ I KG  P + T+ +LI    KQ  M +A ++ +  L+ G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N L++G C    ++      K M      P+ +TYN L+   C+  KV EA 
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
            L  +MK RG+ PD +       T   LI GLC N E D A EL 
Sbjct: 552 ELFKEMKTRGLTPDIV-------TLCTLICGLCSNGELDKAYELF 589



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 154/314 (49%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G +     Y + V G+ K+G + +A ++++ M E+G  P   TYN +++G C  G L  
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSD 444

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    ++ + +G +P   T+N LI     +R M +A ++L  M   GI PD ITYN L+N
Sbjct: 445 ANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLN 504

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+             M+ KG  P ++TY  LI    K  ++ EA +LF+    +G+ P
Sbjct: 505 GLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTP 564

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDR-MKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           DIV    LI G C+NG +++A+ L   +++  K       +N +++  C +  V  A +L
Sbjct: 565 DIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKL 624

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M      PD+        TY  +I   CK    DLA   L E +SKG+ P   T   
Sbjct: 625 FHKMGGSDCAPDN-------YTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGK 677

Query: 303 LIEGIASVDKAAES 316
           ++  +    + +E+
Sbjct: 678 VLNCLCVTHRLSEA 691



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 146/303 (48%), Gaps = 9/303 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD +TY   V+G+CK G L +A+ +L      G +P   T+NTLIDGYC + N
Sbjct: 417 MMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M+  GI P   TYN L++ L   RK+    D  K M EKG  P+ ITYNI
Sbjct: 477 MDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNI 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+     +A  L  EM  +G+ P ++T  +LI  L     + +A +LF     + 
Sbjct: 537 LIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEY 596

Query: 181 MLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
                  +FN +I+  C   N+  A  L  +M      PD  TY  ++   C+ G ++ A
Sbjct: 597 KFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLA 656

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD-N 298
              L +   +G+ P   SF     T   ++  LC       A  ++  MV  GI P++ N
Sbjct: 657 HTFLLENISKGLVP---SFT----TCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVN 709

Query: 299 TYF 301
           + F
Sbjct: 710 SIF 712



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 152/288 (52%), Gaps = 7/288 (2%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           ++G+++EA  + E+M      P+  +YN +++     G    A      M   GI P   
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVY 147

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           T+ + +    +  +   A  +L  M  +G   ++++Y  +I+G+ +     +A+ L DEM
Sbjct: 148 THTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEM 207

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           + +GI P +LT+  LI VL K+  + E+++LF   + +G+ P++  FN  I G C  G I
Sbjct: 208 LKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAI 267

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  LL+ +    + PD ++YNTL+ G C+  K+ EA   L +M   G++P+       
Sbjct: 268 DEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPN------- 320

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
             TYN +I G CK      A+++LR+ + KG  PD+ TY SLI G+ +
Sbjct: 321 EFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 158/302 (52%), Gaps = 7/302 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P   +Y + ++ + + G   +A ++  +MK+ G+ P   T+   +  +C  G    A  
Sbjct: 108 EPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALR 167

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             + M  QG    A +Y  +I     E   +EA  +  EM ++GI PD +T+N LI+  C
Sbjct: 168 LLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLC 227

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + GN +++  L  +++ +G+ P + T+   I  L ++  + EA +L E+ +++G+ PD++
Sbjct: 228 KKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVI 287

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N LI G C +  +  A   L +M    V P+E TYNT+++G C+ G ++ A ++L   
Sbjct: 288 SYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDA 347

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G  PD         TY++LI GLC + + + A  +  E + KG       Y +L++G
Sbjct: 348 MFKGFIPD-------EFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400

Query: 307 IA 308
           ++
Sbjct: 401 LS 402



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 9/177 (5%)

Query: 142 IHKGIQPTML--TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           + K +   ML   Y  ++    ++ ++ EA  +FE        P +  +NA+++     G
Sbjct: 66  MRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYG 125

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
              +A  +   M  + ++PD  T+   M   C  G+   A RLL+ M  +G + + +S  
Sbjct: 126 YFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVS-- 183

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                Y A+I G  K      A  L  EM+ +GI PD  T+  LI  +       ES
Sbjct: 184 -----YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQES 235


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 188/343 (54%), Gaps = 31/343 (9%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RGV P+ +T+  F+ G+C++G ++EA+R+LE +   GL P  ++YNTLI G+C    L  
Sbjct: 245 RGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVE 304

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +  +MV  G+ P   TYN +I+       M  AD +L++   KG +PD  TY+ LIN
Sbjct: 305 AECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN 364

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G+  +A ++  E + KG + +++ Y +L+  LSKQ  +++A QL ++ +  G  P
Sbjct: 365 GLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSP 424

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +++G C  G +  A  +L +       PD  T+NTL+ G C+Q  +++A  +L
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEIL 484

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
           D M   GI PD I++N                            P  +TYN LI+  CK+
Sbjct: 485 DTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKD 544

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           ++   A EL +EM ++G+TPD  T  +LI G+ S   +DKA E
Sbjct: 545 RKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYE 587



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 164/312 (52%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  T+   +  +CK+G ++E+ ++  ++ + G+ P   T+N  I G C KG 
Sbjct: 207 MLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGA 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + +V +G+ P   +YN LI       K+VEA+  L +M   G+ P+  TYN 
Sbjct: 267 IDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNT 326

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G  + A  +  + + KG  P   TY+SLI  L     M  A  +F   + KG
Sbjct: 327 IINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKG 386

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I+++N L+ G    G + +A  L+K+M      PD  TYN +++G C+ G + +A 
Sbjct: 387 FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDAN 446

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L+    +G  PD         T+N LI G CK +  D A E+L  M+S GITPD  TY
Sbjct: 447 GILNDAIAKGCIPD-------IFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITY 499

Query: 301 FSLIEGIASVDK 312
            +L+ G+    K
Sbjct: 500 NTLLNGLCKARK 511



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 154/285 (54%), Gaps = 7/285 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV+P+ +TY + ++G CK G ++ A ++L      G +P   TY++LI+G CN G+
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGD 371

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   E +++G   +   YN L+  L  +  +++A  ++K+M E G  PD  TYN+
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G    A  + ++ I KG  P + T+ +LI    KQ  M +A ++ +  L+ G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N L++G C    ++      K M      P+ +TYN L+   C+  KV EA 
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
            L  +MK RG+ PD +       T   LI GLC N E D A EL 
Sbjct: 552 ELFKEMKTRGLTPDIV-------TLCTLICGLCSNGELDKAYELF 589



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 154/314 (49%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G +     Y + V G+ K+G + +A ++++ M E+G  P   TYN +++G C  G L  
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSD 444

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    ++ + +G +P   T+N LI     +R M +A ++L  M   GI PD ITYN L+N
Sbjct: 445 ANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLN 504

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+             M+ KG  P ++TY  LI    K  ++ EA +LF+    +G+ P
Sbjct: 505 GLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTP 564

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDR-MKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           DIV    LI G C+NG +++A+ L   +++  K       +N +++  C +  V  A +L
Sbjct: 565 DIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKL 624

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M      PD+        TY  +I   CK    DLA   L E +SKG+ P   T   
Sbjct: 625 FHKMGGSDCAPDN-------YTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGK 677

Query: 303 LIEGIASVDKAAES 316
           ++  +    + +E+
Sbjct: 678 VLNCLCVTHRLSEA 691



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 146/303 (48%), Gaps = 9/303 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD +TY   V+G+CK G L +A+ +L      G +P   T+NTLIDGYC + N
Sbjct: 417 MMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M+  GI P   TYN L++ L   RK+    D  K M EKG  P+ ITYNI
Sbjct: 477 MDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNI 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+     +A  L  EM  +G+ P ++T  +LI  L     + +A +LF     + 
Sbjct: 537 LIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEY 596

Query: 181 MLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
                  +FN +I+  C   N+  A  L  +M      PD  TY  ++   C+ G ++ A
Sbjct: 597 KFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLA 656

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD-N 298
              L +   +G+ P   SF     T   ++  LC       A  ++  MV  GI P++ N
Sbjct: 657 HTFLLENISKGLVP---SFT----TCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVN 709

Query: 299 TYF 301
           + F
Sbjct: 710 SIF 712



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 152/288 (52%), Gaps = 7/288 (2%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           ++G+++EA  + E+M      P+  +YN +++     G    A      M   GI P   
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVY 147

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           T+ + +    +  +   A  +L  M  +G   ++++Y  +I+G+ +     +A+ L DEM
Sbjct: 148 THTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEM 207

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           + +GI P +LT+  LI VL K+  + E+++LF   + +G+ P++  FN  I G C  G I
Sbjct: 208 LKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAI 267

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  LL+ +    + PD ++YNTL+ G C+  K+ EA   L +M   G++P+       
Sbjct: 268 DEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPN------- 320

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
             TYN +I G CK      A+++LR+ + KG  PD+ TY SLI G+ +
Sbjct: 321 EFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368



 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 158/302 (52%), Gaps = 7/302 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P   +Y + ++ + + G   +A ++  +MK+ G+ P   T+   +  +C  G    A  
Sbjct: 108 EPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALR 167

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             + M  QG    A +Y  +I     E   +EA  +  EM ++GI PD +T+N LI+  C
Sbjct: 168 LLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLC 227

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + GN +++  L  +++ +G+ P + T+   I  L ++  + EA +L E+ +++G+ PD++
Sbjct: 228 KKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVI 287

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N LI G C +  +  A   L +M    V P+E TYNT+++G C+ G ++ A ++L   
Sbjct: 288 SYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDA 347

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G  PD         TY++LI GLC + + + A  +  E + KG       Y +L++G
Sbjct: 348 MFKGFIPD-------EFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKG 400

Query: 307 IA 308
           ++
Sbjct: 401 LS 402



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 7/253 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY   +   CK+ ++ EA  + ++MK  GL P  VT  TLI G C+ G 
Sbjct: 522 MLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGE 581

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A+     + K+     + + +N++I+    +  +  A+ +  +MG     PD+ TY 
Sbjct: 582 LDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYR 641

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ++I+ YC+ GN   A +   E I KG+ P+  T   ++  L   +R+ EA  +    +  
Sbjct: 642 VMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQN 701

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V  N++ +    +     A  ++ E    K H    +Y  L  G  R  KV EA
Sbjct: 702 GIVPEEV--NSIFEA---DKKEVAAPKIVVEYLLKKSHITYYSYELLYDG-IRNRKVVEA 755

Query: 240 RRLLDQMKRRGIK 252
           R LL ++  +  K
Sbjct: 756 RPLLYKVAYQKAK 768



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 9/177 (5%)

Query: 142 IHKGIQPTML--TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           + K +   ML   Y  ++    ++ ++ EA  +FE        P +  +NA+++     G
Sbjct: 66  MRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYG 125

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
              +A  +   M  + ++PD  T+   M   C  G+   A RLL+ M  +G + + +S  
Sbjct: 126 YFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVS-- 183

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                Y A+I G  K      A  L  EM+ +GI PD  T+  LI  +       ES
Sbjct: 184 -----YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQES 235


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 185/334 (55%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV P  + Y   + G+CKE R+++A ++ ++M +  + P  +TYNTLIDGYC  G 
Sbjct: 208 MKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQ 267

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF+ R+ M  + + PT  T+N L++ L   + M EA  +L+EM   G VPD  TY  
Sbjct: 268 LEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTT 327

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +G+ +CGN   + +L +E + KG+Q    T + L+  L K+  M +A+++ + FL  G
Sbjct: 328 LFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENG 387

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V FN +++G+C  G+I +A++ +++M+ + + P+ VTYN+L+   C    +EEA 
Sbjct: 388 LAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAE 447

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           + + +M  +G+ P+  ++N                            P  ++Y  LI  L
Sbjct: 448 KCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCL 507

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           CK+     AE +L +MV +G+ P+   Y  LI+G
Sbjct: 508 CKDANILEAEVILGDMVHRGVVPNAQIYNMLIDG 541



 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 185/307 (60%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+  +YG  ++ +CK+  + EA  +L  M   G+VP A  YN LIDG C  G 
Sbjct: 488 MEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGK 547

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF F DEMV + I+PT  TYN+LI+ L  + K++EA+++  E+  KG+  D ITYN 
Sbjct: 548 LKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNS 607

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY   GN +KA  L++ M   GI+PT+ TY  LI    K+  ++  +++++  L   
Sbjct: 608 LISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG-LVLVEKIYQEMLQMN 666

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V++NALI  +  +G++++A SL   M+   + PD++TYN L+ G  ++G++ + +
Sbjct: 667 LVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVK 726

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L++ MK RG+ P          TY+ LI G CK ++ D A    REM   G TP  +  
Sbjct: 727 NLVNDMKIRGLIPK-------TETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSIC 779

Query: 301 FSLIEGI 307
            +LI G+
Sbjct: 780 DNLITGL 786



 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 175/303 (57%), Gaps = 7/303 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GVQ   YT    ++ +CKEG +E+A  +L++  ENGL P  V +NT+++GYC  G++  
Sbjct: 351 KGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINK 410

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A++  ++M   G+ P   TYN L+ +    + M EA+  +K+M EKG++P+  TYN LI+
Sbjct: 411 AYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLID 470

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY R     + F + +EM  KG++P +++Y  LI  L K   ++EA+ +  + + +G++P
Sbjct: 471 GYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVP 530

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +  ++N LIDG C  G ++ AF    EM   ++ P  VTYN L++G C++GKV EA  L 
Sbjct: 531 NAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLA 590

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            ++ R+G+  D I       TYN+LI G         A EL   M   GI P  NTY  L
Sbjct: 591 SEITRKGLSFDVI-------TYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRL 643

Query: 304 IEG 306
           I G
Sbjct: 644 IAG 646



 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 190/346 (54%), Gaps = 31/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V+P   T+ S ++G+C+   +EEA R+LE+M+  G VP   TY TL DG+   GN
Sbjct: 278 MKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGN 337

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ + +  +E V++G+     T ++L++ L  E  M +A+++LK+  E G+ P  + +N 
Sbjct: 338 VDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNT 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NGYC+ G+  KA++  ++M   G++P  +TY SL+    +   M EA++  +  + KG
Sbjct: 398 IVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKG 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++  +N LIDG+  +   +R F +L+EM++  + P+ ++Y  L++  C+   + EA 
Sbjct: 458 VLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAE 517

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +L  M  RG+ P+   +N                            PT +TYN LI GL
Sbjct: 518 VILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGL 577

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           CK  +   AE L  E+  KG++ D  TY SLI G +S   V KA E
Sbjct: 578 CKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALE 623



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 170/334 (50%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV P   +   F+  +    R E+  ++  ++ E+GL P    Y   I      G+
Sbjct: 138 MKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGD 197

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M + G+ P    YN++I  L  E++M +A+ +  EM ++ + P+ ITYN 
Sbjct: 198 LKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNT 257

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  ++AF++ + M  + ++PT++T+ SL+  L +   M EA ++ E     G
Sbjct: 258 LIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYG 317

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD   +  L DGH   GN++ + +L +E  R  V   + T + L++  C++G +E+A 
Sbjct: 318 FVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAE 377

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +L +    G+ P  + FN                            P  +TYN+L++  
Sbjct: 378 EVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKF 437

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C+ +  + AE+ +++MV KG+ P+  TY +LI+G
Sbjct: 438 CEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDG 471



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 132/250 (52%), Gaps = 1/250 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R + P   TY   ++G+CK+G++ EA  +  ++   GL    +TYN+LI GY + GN
Sbjct: 558 MVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGN 617

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M K GI PT +TY+ LI     E  +V  + + +EM +  +VPD + YN 
Sbjct: 618 VQKALELYETMKKSGIKPTLNTYHRLIAGCGKE-GLVLVEKIYQEMLQMNLVPDRVIYNA 676

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y   G+ +KA SLH  M  +GIQP  +TY  LI    K+ RM +   L  +   +G
Sbjct: 677 LIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRG 736

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    ++ LI GHC   + + A+   +EM      P     + L+ G   +G+  +A 
Sbjct: 737 LIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDAD 796

Query: 241 RLLDQMKRRG 250
            +  +M  +G
Sbjct: 797 VICSEMNMKG 806



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 148 PTMLTYTSLIFVLSKQNRMI-EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           P    ++ ++  +  +++M+ E+ +L+      G+LP +   N  ++   +    E    
Sbjct: 109 PMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQ 168

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L  E+    + PD+  Y   +    + G ++ A  L+  MKR G+       +P    YN
Sbjct: 169 LFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGV-------SPGVFVYN 221

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            +I GLCK +    AE+L  EM+ + + P+  TY +LI+G   V +  E+ N
Sbjct: 222 VVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFN 273


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 184/344 (53%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++PD  ++   +    + G+++ A   L +M+  GLVP  V Y  +I G+C  G 
Sbjct: 226 MRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGL 285

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEMV  G +P   TYN L++ L  ER++++A+ +L EM E+G+ PD  T+  
Sbjct: 286 MSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT 345

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC  G   KA  L D M+++ ++P ++TY +LI  + +Q  + +A+ L+++  ++ 
Sbjct: 346 LIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE 405

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V ++ LID HC  G +E AF  L EM    + P+ +TYN+++ G CR G V + +
Sbjct: 406 IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQ 465

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           + L +M    + PD I++N                            P  +TYN LI G 
Sbjct: 466 KFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 525

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             +     A  +  +M +KGI PD  TY S+I G  +   + E+
Sbjct: 526 SVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEA 569



 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 171/306 (55%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++P   TY S + G+C+ G  ++A  + ++M + G+ P   ++  LI G+C  G 
Sbjct: 156 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 215

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM  +GI P   +++ LI       KM  A   L+EM   G+VPD + Y +
Sbjct: 216 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 275

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+CR G    A  + DEM+  G  P ++TY +L+  L K+ R+++A+ L      +G
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  F  LI G+C  G +++A  L   M   ++ PD VTYNTL+ G CRQG +++A 
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 395

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M  R I P+H+       TY+ LI   C+  + + A   L EM++KGI P+  TY
Sbjct: 396 DLWDDMHSREIFPNHV-------TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTY 448

Query: 301 FSLIEG 306
            S+I+G
Sbjct: 449 NSIIKG 454



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 161/288 (55%), Gaps = 7/288 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD  TY + ++G+CKE RL +A  +L +M+E G+ P   T+ TLI GYC +G L+ A
Sbjct: 300 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 359

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D M+ Q + P   TYN LI  +  +  + +A+D+  +M  + I P+ +TY+ILI+ 
Sbjct: 360 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 419

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G  + AF   DEMI+KGI P ++TY S+I    +   + +  +  +  +   + PD
Sbjct: 420 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 479

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +N LI G+     +  AF LL  M++ KV PD VTYN L++G    G V+EA  + +
Sbjct: 480 LITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 539

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +M  +GI+PD       R TY ++I G         A +L  EM+ +G
Sbjct: 540 KMCAKGIEPD-------RYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 168/325 (51%), Gaps = 28/325 (8%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++YT    V   CK    ++   ++ +M++  + P  VT+N ++D     G+ E A +  
Sbjct: 94  NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D MV +G+ P   TYN ++  L       +A ++ KEM + G+ PD  ++ ILI G+CR 
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 213

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  ++A  ++ EM H+GI+P +++++ LI + +++ +M  A          G++PD V++
Sbjct: 214 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 273

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             +I G C  G +  A  +  EM      PD VTYNTL++G C++ ++ +A  LL++M+ 
Sbjct: 274 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 333

Query: 249 RGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDL 280
           RG+ PD  +F                             P  +TYN LI G+C+  + D 
Sbjct: 334 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDK 393

Query: 281 AEELLREMVSKGITPDDNTYFSLIE 305
           A +L  +M S+ I P+  TY  LI+
Sbjct: 394 ANDLWDDMHSREIFPNHVTYSILID 418



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 146/250 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RGV PD  T+ + + G C EG+L++A ++ + M    L P  VTYNTLIDG C +G+
Sbjct: 331 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 390

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D+M  + I P   TY++LI     + ++ +A   L EM  KGI+P+ +TYN 
Sbjct: 391 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 450

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYCR GN  K      +M+   + P ++TY +LI    K+++M +A +L      + 
Sbjct: 451 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 510

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N LI+G   +GN++ A  + ++M    + PD  TY ++++G    G  +EA 
Sbjct: 511 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAF 570

Query: 241 RLLDQMKRRG 250
           +L D+M +RG
Sbjct: 571 QLHDEMLQRG 580



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 7/129 (5%)

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            N ++  +C     ++  +++ EM++  V PD VT+N ++  R R G  E A  L+D M 
Sbjct: 98  LNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMV 157

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G+KP  +       TYN++++GLC++   D A E+ +EM   G+ PD  ++  LI G 
Sbjct: 158 SKGLKPGIV-------TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 210

Query: 308 ASVDKAAES 316
             V +  E+
Sbjct: 211 CRVGEIEEA 219



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 7/227 (3%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P    ++LLI      RK  EA +  + + +  +   +   N L+    R G    A   
Sbjct: 23  PQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADA 82

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
           +  +     +    T   ++    K     + D +      + + PD+V  N ++D    
Sbjct: 83  YRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 142

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G+ E A +L+  M    + P  VTYN+++ G CR G  ++A  +  +M   G+ PD  S
Sbjct: 143 AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRS 202

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           F         LI G C+  E + A ++ +EM  +GI PD  ++  LI
Sbjct: 203 F-------TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLI 242


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 184/344 (53%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++PD  ++   +    + G+++ A   L +M+  GLVP  V Y  +I G+C  G 
Sbjct: 287 MRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGL 346

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEMV  G +P   TYN L++ L  ER++++A+ +L EM E+G+ PD  T+  
Sbjct: 347 MSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT 406

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC  G   KA  L D M+++ ++P ++TY +LI  + +Q  + +A+ L+++  ++ 
Sbjct: 407 LIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE 466

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V ++ LID HC  G +E AF  L EM    + P+ +TYN+++ G CR G V + +
Sbjct: 467 IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQ 526

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           + L +M    + PD I++N                            P  +TYN LI G 
Sbjct: 527 KFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGF 586

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             +     A  +  +M +KGI PD  TY S+I G  +   + E+
Sbjct: 587 SVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEA 630



 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 171/306 (55%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++P   TY S + G+C+ G  ++A  + ++M + G+ P   ++  LI G+C  G 
Sbjct: 217 MVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE 276

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM  +GI P   +++ LI       KM  A   L+EM   G+VPD + Y +
Sbjct: 277 IEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 336

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+CR G    A  + DEM+  G  P ++TY +L+  L K+ R+++A+ L      +G
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  F  LI G+C  G +++A  L   M   ++ PD VTYNTL+ G CRQG +++A 
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 456

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M  R I P+H+       TY+ LI   C+  + + A   L EM++KGI P+  TY
Sbjct: 457 DLWDDMHSREIFPNHV-------TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTY 509

Query: 301 FSLIEG 306
            S+I+G
Sbjct: 510 NSIIKG 515



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 164/293 (55%), Gaps = 7/293 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD  TY + ++G+CKE RL +A  +L +M+E G+ P   T+ TLI GYC +G L+ A
Sbjct: 361 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 420

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D M+ Q + P   TYN LI  +  +  + +A+D+  +M  + I P+ +TY+ILI+ 
Sbjct: 421 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 480

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G  + AF   DEMI+KGI P ++TY S+I    +   + +  +  +  +   + PD
Sbjct: 481 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 540

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +N LI G+     +  AF LL  M++ KV PD VTYN L++G    G V+EA  + +
Sbjct: 541 LITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 600

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +M  +GI+PD       R TY ++I G         A +L  EM+ +G  PDD
Sbjct: 601 KMCAKGIEPD-------RYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 646



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 168/325 (51%), Gaps = 28/325 (8%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++YT    V   CK    ++   ++ +M++  + P  VT+N ++D     G+ E A +  
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D MV +G+ P   TYN ++  L       +A ++ KEM + G+ PD  ++ ILI G+CR 
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 274

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  ++A  ++ EM H+GI+P +++++ LI + +++ +M  A          G++PD V++
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 334

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             +I G C  G +  A  +  EM      PD VTYNTL++G C++ ++ +A  LL++M+ 
Sbjct: 335 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 394

Query: 249 RGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDL 280
           RG+ PD  +F                             P  +TYN LI G+C+  + D 
Sbjct: 395 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDK 454

Query: 281 AEELLREMVSKGITPDDNTYFSLIE 305
           A +L  +M S+ I P+  TY  LI+
Sbjct: 455 ANDLWDDMHSREIFPNHVTYSILID 479



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/254 (36%), Positives = 148/254 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RGV PD  T+ + + G C EG+L++A ++ + M    L P  VTYNTLIDG C +G+
Sbjct: 392 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D+M  + I P   TY++LI     + ++ +A   L EM  KGI+P+ +TYN 
Sbjct: 452 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 511

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYCR GN  K      +M+   + P ++TY +LI    K+++M +A +L      + 
Sbjct: 512 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 571

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N LI+G   +GN++ A  + ++M    + PD  TY ++++G    G  +EA 
Sbjct: 572 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAF 631

Query: 241 RLLDQMKRRGIKPD 254
           +L D+M +RG  PD
Sbjct: 632 QLHDEMLQRGFAPD 645



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 124/220 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ ++PD  TY + + GMC++G L++A+ + + M    + P  VTY+ LID +C KG 
Sbjct: 427 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ 486

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F DEM+ +GI+P   TYN +I        + +    L++M    + PD ITYN 
Sbjct: 487 VEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 546

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY +      AF L + M  + +QP ++TY  LI   S    + EA  +FE   AKG
Sbjct: 547 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 606

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
           + PD   + ++I+GH T GN + AF L  EM +    PD+
Sbjct: 607 IEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 646



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 7/129 (5%)

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            N ++  +C     ++  +++ EM++  V PD VT+N ++  R R G  E A  L+D M 
Sbjct: 159 LNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMV 218

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G+KP  +       TYN++++GLC++   D A E+ +EM   G+ PD  ++  LI G 
Sbjct: 219 SKGLKPGIV-------TYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 271

Query: 308 ASVDKAAES 316
             V +  E+
Sbjct: 272 CRVGEIEEA 280



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 7/227 (3%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P    ++LLI      RK  EA +  + + +  +   +   N L+    R G    A   
Sbjct: 84  PQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADA 143

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
           +  +     +    T   ++    K     + D +      + + PD+V  N ++D    
Sbjct: 144 YRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFR 203

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G+ E A +L+  M    + P  VTYN+++ G CR G  ++A  +  +M   G+ PD  S
Sbjct: 204 AGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRS 263

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           F         LI G C+  E + A ++ +EM  +GI PD  ++  LI
Sbjct: 264 F-------TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLI 303


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 10/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PD YTYG+ + G C+ GR+E A +M  +M++ G+ P AV + TLID +C +GN
Sbjct: 246 MSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGN 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +        +M  +G+MP    YN L++ L   R +  A+ +++EM   G+ PD +TY  
Sbjct: 306 VNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTT 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  +  +M  K +    +TYT+LI  LSK  R ++A+++    +   
Sbjct: 366 LIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAA 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  +ID  C  G+++  F LLKEM      P  VTYN +M+G C+ G+++ A 
Sbjct: 426 LEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNAD 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M   G+ PD I       TYN L+ G CK+ +   +EEL     SKG+ PD   Y
Sbjct: 486 MLLHAMLNIGVSPDDI-------TYNILLDGQCKHGKVANSEELES---SKGMVPDFAVY 535

Query: 301 FSLIEGIA 308
            SLI  +A
Sbjct: 536 TSLISELA 543



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 149/280 (53%), Gaps = 8/280 (2%)

Query: 28  EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
           EA     Q+ + G+ P    +N L+  +   G L  A    DEM ++ + PT  T+N LI
Sbjct: 169 EAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEM-RRSVQPTVVTFNTLI 227

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
             +   R +   D + KEM + G+ PD  TY  LI G+CR G  + A  + +EM   G+ 
Sbjct: 228 SGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVN 287

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P  + +T+LI    K+  +     L+++   +G++PD+V +NAL++G C   N++ A S+
Sbjct: 288 PNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESI 347

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           ++EM    + PD+VTY TL+ G C+ GK++ A  +  +M  + +  D +       TY A
Sbjct: 348 VEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEV-------TYTA 400

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LI GL K      AE +LREM+   + PD+ TY  +I+  
Sbjct: 401 LISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAF 440



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V  D  TY + +SG+ K GR  +A R+L +M E  L P   TY  +ID +C KG+
Sbjct: 386 MAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGD 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++  F    EM  +G  P   TYN++++ L    +M  AD +L  M   G+ PD ITYNI
Sbjct: 446 VKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNI 505

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           L++G C+ G    +  L      KG+ P    YTSLI  L+K+
Sbjct: 506 LLDGQCKHGKVANSEELESS---KGMVPDFAVYTSLISELAKK 545


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 176/343 (51%), Gaps = 32/343 (9%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K RG +P+   Y       CK GRL++A  +   +      P A+ YN +I G+C K + 
Sbjct: 187 KVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHCRKNDC 242

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A  F  EM ++ + P   TYN+LI  L    K  +A +ML EM ++G+ PD++T+N +
Sbjct: 243 DGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSI 302

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++G C+ G  ++A SL   M  +  +P+  TY +LI  L KQ  +  A  L + F++ G 
Sbjct: 303 MDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGF 362

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD+V ++ L DG C  G I+ AF L+KEM      P+ VTYNTL+ G C+  K E+A  
Sbjct: 363 VPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYE 422

Query: 242 LLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLC 273
           LL+ +   G  PD +++                             P+ +TY AL++GLC
Sbjct: 423 LLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLC 482

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +    D A  + +EMVSK  T D   Y SL+ G     +  E+
Sbjct: 483 RTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA 525



 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 174/341 (51%), Gaps = 25/341 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD +TY   + G+CK  + ++AS ML +M + G+ P  VT+N+++DG C  G 
Sbjct: 252 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 311

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A S    M ++   P+  TYN LI  L  ++ +  A D++ E    G VPD +TY+I
Sbjct: 312 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI 371

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +G C+ G   +AF L  EM  KG  P ++TY +LI  L K ++  +A +L E+ ++ G
Sbjct: 372 LADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSG 431

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  ++DG C  G +++A  +++ M +    P  +TY  LM G CR G+V+EA 
Sbjct: 432 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 491

Query: 241 RLLDQMKRRGIKPDHISF-------------------------NPTRLTYNALIQGLCKN 275
            +  +M  +    D +++                          P    YNAL+ G CK 
Sbjct: 492 HIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKE 551

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              D    +  +M  +G  P+  TY  +++G+    K  E+
Sbjct: 552 GRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 592



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 159/313 (50%), Gaps = 11/313 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG +  ++T   F+  + + G  +    M E+M + G  P + TY+ +I   C    ++ 
Sbjct: 119 RGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDK 178

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF+  D+   +G  P  S Y +L        ++ +A ++ + +      PD+I YN +I+
Sbjct: 179 AFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIH 234

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+CR  +   A     EM  + + P + TY  LI  L K ++  +A ++    + +G+ P
Sbjct: 235 GHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTP 294

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V FN+++DG C  G  ERA SLL  M      P   TYNTL+ G C+Q  V+ A+ L+
Sbjct: 295 DTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLV 354

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D+    G  PD +       TY+ L  GLCK    D A EL++EM  KG TP+  TY +L
Sbjct: 355 DEFVSSGFVPDVV-------TYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTL 407

Query: 304 IEGIASVDKAAES 316
           I+G+    K  ++
Sbjct: 408 IDGLCKASKTEKA 420



 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 164/316 (51%), Gaps = 14/316 (4%)

Query: 5   GVQPDSY--TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           G++   Y   Y + + G CKEGRL+E   + E M   G VP   TYN ++DG C  G ++
Sbjct: 531 GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVD 590

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF F + M   G +P   +YN++I  L    K  EA  +L +M + GI PD++TYN L+
Sbjct: 591 EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLM 650

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-M 181
             +C+      A  +   MI  G+ P  +TY +LI  LS+ NR+ +A +L    L  G +
Sbjct: 651 AQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 710

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +     +N +ID  C  G +++A  L+  M    V  + VTYN  +   C++G+++EA  
Sbjct: 711 VSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASS 770

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS-KGITPDDNTY 300
           LL +M       D +S       Y  +I GLCK ++ D A +L REMV+ KG+    +T+
Sbjct: 771 LLSEMD---TLRDEVS-------YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTF 820

Query: 301 FSLIEGIASVDKAAES 316
             LI+      +  E+
Sbjct: 821 NLLIDAFTKTKRLDEA 836



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 170/346 (49%), Gaps = 33/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+  TY   + G+CK G+++EA   LE M   G VP  V+YN +IDG      
Sbjct: 564 MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 623

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D+M++ GI P A TYN L+ +   E +  +A  +LK M + G+ PD++TYN 
Sbjct: 624 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 683

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G  +      A+ L  EM+  G +     TY ++I  L K+  + +A  L ++    
Sbjct: 684 LISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH 743

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  + V +N  ID  C  G ++ A SLL EMD ++   DEV+Y T++ G C+  +++ A
Sbjct: 744 GVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---DEVSYTTVIIGLCKAEQLDRA 800

Query: 240 RRLLDQM-KRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
            +L  +M   +G+     +FN                            P+ +TYN +I 
Sbjct: 801 SKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVIT 860

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            LCK  + D A EL  EM  +GI     +Y  LI G+    +  E+
Sbjct: 861 CLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEA 906



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 179/386 (46%), Gaps = 75/386 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY + + G+CK  + E+A  +LE +  +G VP  VTY  ++DG C +G 
Sbjct: 392 MSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGR 451

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M+K+G  P+  TY  L+  L    ++ EA  + KEM  K    D++ Y  
Sbjct: 452 LDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVS 511

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ--PTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           L+NGYC+    K+A  + D     GI+  P +  Y +L+    K+ R+ E   +FE+   
Sbjct: 512 LVNGYCKSSRTKEAQKVVD-----GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMAC 566

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--------------------------- 211
           +G +P+I  +N ++DG C +G ++ AF  L+ M                           
Sbjct: 567 RGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 626

Query: 212 -----DRM---KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP--- 260
                D+M    + PD VTYNTLM   C++ + ++A  +L  M + G+ PD++++N    
Sbjct: 627 ARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS 686

Query: 261 -----TRL---------------------TYNALIQGLCKNQEGDLAEELL--REMVSKG 292
                 RL                     TYN +I  LCK  EG L + LL    M   G
Sbjct: 687 GLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCK--EGCLKQALLLMDHMTGHG 744

Query: 293 ITPDDNTYFSLIEGIASVDKAAESSN 318
           +  +  TY   I+ +    +  E+S+
Sbjct: 745 VEANTVTYNIFIDRLCKEGRLDEASS 770



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 134/260 (51%), Gaps = 5/260 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA-VTYNTLIDGYCNKG 59
           M   GV PD+ TY + +SG+ +  RL +A  ++ +M  NG V +A  TYNT+ID  C +G
Sbjct: 669 MIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 728

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L+ A    D M   G+     TYN+ I  L  E ++ EA  +L EM     + D ++Y 
Sbjct: 729 CLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMD---TLRDEVSYT 785

Query: 120 ILINGYCRCGNAKKAFSLHDEMIH-KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            +I G C+     +A  L  EM+  KG+  T  T+  LI   +K  R+ EA  L    + 
Sbjct: 786 TVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQ 845

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G  P ++ +N +I   C    +++A+ L  EM    +    V+Y  L++G C QG+ +E
Sbjct: 846 RGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKE 905

Query: 239 ARRLLDQMKRRGIKPDHISF 258
           A ++L++M     + D + +
Sbjct: 906 ALQVLEEMASSDCEIDDLKW 925



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 11/174 (6%)

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           +G + +  T    +  L +         +FE  L  G  PD   ++ +I   C    I++
Sbjct: 119 RGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDK 178

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           AF++L +       P+   Y  L    C+ G++++A  +   +            +P  +
Sbjct: 179 AFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIP-----------SPDAI 227

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            YNA+I G C+  + D A E L+EM  + + PD  TY  LI+G+    K  ++S
Sbjct: 228 AYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKAS 281


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 179/338 (52%), Gaps = 42/338 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G   +  T  + + G+CK G ++EA R+L++M E G V   +TYNTLI G C +G +E 
Sbjct: 485 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEE 544

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP---------- 113
            F  R EMVKQGI P   TYNLLIH +    K+ EA ++  E   + +VP          
Sbjct: 545 GFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMID 604

Query: 114 -------------------------DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                    +S+ YN LI  YCR GN  +AF LHD+M  KGI P
Sbjct: 605 GYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP 664

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T  TY+SLI  +    RM +A  L +    +G+LP++V + ALI G+C  G +++  ++L
Sbjct: 665 TTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVL 724

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           +EM    +HP+++TY  ++ G  + G ++ A +LL +M  +GI PD +       TYN L
Sbjct: 725 QEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV-------TYNVL 777

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             G CK  + +   ++   M  +G+  D+ TY +L+ G
Sbjct: 778 TNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHG 815



 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 181/350 (51%), Gaps = 42/350 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD Y + + ++  CK G++E+A ++   M++ G+ P  VTYN LI G C  GNL+ 
Sbjct: 240 QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDE 299

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F+++MVK G+  T  TY++LI+ L+   K  EA+ +LKE  EKG  P+ + YN LI+
Sbjct: 300 AFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLID 359

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+ GN   A  +  +M+ KGI P  +T  S+I    K  +M +A+ + E  L++G   
Sbjct: 360 GYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSI 419

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE----------------------- 220
           +   F  +I   C N   E A   L+EM    + P++                       
Sbjct: 420 NPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELW 479

Query: 221 ------------VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
                       VT N L+HG C+ G ++EA RLL +M  RG   D       ++TYN L
Sbjct: 480 FRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD-------KITYNTL 532

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           I G CK  + +   +L  EMV +GI PD  TY  LI G+  + K  E+ N
Sbjct: 533 ISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVN 582



 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 175/343 (51%), Gaps = 28/343 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R ++P+     + V G+CKEG+  +A  +  ++ E G     VT N LI G C  GN
Sbjct: 447 MLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGN 506

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M+++G +    TYN LI     E K+ E   +  EM ++GI PD+ TYN+
Sbjct: 507 MQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNL 566

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR G   +A +L +E   + + P + TY  +I    K +++ E ++LF   L + 
Sbjct: 567 LIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 626

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++N LI  +C NGN   AF L  +M    + P   TY++L+HG C  G++E+A+
Sbjct: 627 LELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAK 686

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            L+D+M++ G+ P+ + +                            +P ++TY  +I G 
Sbjct: 687 CLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGY 746

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            K+ +   A +LL EMV KGI PD  TY  L  G     K  E
Sbjct: 747 SKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEE 789



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 172/350 (49%), Gaps = 42/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK----------------------- 37
           M+  GV P+  TY + + G+CK G L+EA R  E+M                        
Sbjct: 272 MEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEK 331

Query: 38  ------------ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                       E G  P  V YNTLIDGYC  GNL  A   R +MV +GI P + T N 
Sbjct: 332 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 391

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I       +M +A+ +L+EM  +G   +   +  +I+  C     + A     EM+ + 
Sbjct: 392 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 451

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P     T+L+  L K+ +  +A +L+   L KG   ++V  NALI G C  GN++ A 
Sbjct: 452 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAV 511

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            LLK+M       D++TYNTL+ G C++GKVEE  +L  +M ++GI+PD         TY
Sbjct: 512 RLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD-------TFTY 564

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           N LI G+C+  + D A  L  E  S+ + P+  TY  +I+G    DK  E
Sbjct: 565 NLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 614



 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 151/281 (53%), Gaps = 8/281 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           +   G+ PT  T   L+        LE ++ +  E ++QG+ P    ++  I+      K
Sbjct: 203 LANKGVFPTVKTCTFLLSSLVKANELEKSY-WVFETMRQGVSPDVYLFSTAINAFCKGGK 261

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           + +A  +  +M + G+ P+ +TYN LI+G C+ GN  +AF   ++M+  G+  T++TY+ 
Sbjct: 262 VEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSV 321

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           LI  L K  +  EA+ + +  L KG  P+ V++N LIDG+C  GN+  A  +  +M    
Sbjct: 322 LINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKG 381

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           ++P+ VT N+++ G C+ G++E+A  +L++M  RG      S NP   T   +I  LC N
Sbjct: 382 INPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRG-----FSINPGAFT--TIIHWLCMN 434

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              + A   LREM+ + + P+D    +L+ G+    K +++
Sbjct: 435 SRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDA 475



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 121/207 (58%), Gaps = 13/207 (6%)

Query: 103 LKEMGEKGIVPDSITYNILINGYC---RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
           L E+GE G+   ++  ++LI+ YC   R    + A  +   + +KG+ PT+ T T L+  
Sbjct: 164 LNEVGESGVAVAAV--DLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSS 221

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K N + ++  +FE  + +G+ PD+ +F+  I+  C  G +E A  L  +M+++ V P+
Sbjct: 222 LVKANELEKSYWVFET-MRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPN 280

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            VTYN L+HG C+ G ++EA R  ++M + G+       N T +TY+ LI GL K ++ +
Sbjct: 281 VVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV-------NATLITYSVLINGLMKLEKFN 333

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG 306
            A  +L+E + KG TP++  Y +LI+G
Sbjct: 334 EANSVLKETLEKGFTPNEVVYNTLIDG 360



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 35/160 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV-------------- 46
           M+S+G+ P + TY S + GMC  GR+E+A  ++++M++ GL+P  V              
Sbjct: 657 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQ 716

Query: 47  ---------------------TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                TY  +IDGY   G+++ A     EMV +GI+P   TYN+
Sbjct: 717 MDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNV 776

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           L +    E K+ E   +   M ++G+  D ITY  L++G+
Sbjct: 777 LTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGW 816


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 174/312 (55%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+RG  PD  TY   V G+CKE ++  A  +L +M + G VP  VTYN+L+ G C    
Sbjct: 217 MKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARR 276

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M  +G  P   TY  LI  L    ++ +A  ML +M +KG  PD + YN+
Sbjct: 277 VSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNM 336

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     ++ +L    +  GI+P ++TY+S+I+ L + NR+ EA +L     ++G
Sbjct: 337 LINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG 396

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+++++ LIDG C  G ++ AF L + M       D VTY+TL+ G C+ G+V+EA 
Sbjct: 397 CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAH 456

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M R G         P+ +TYN+LI+GLC     D A EL+ EM      P   TY
Sbjct: 457 LLLARMVRMGTP-------PSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTY 509

Query: 301 FSLIEGIASVDK 312
             LI G+  +++
Sbjct: 510 NILIHGMCRMER 521



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 169/309 (54%), Gaps = 6/309 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+  TYG+ + G+CK GR+++A  ML  M + G  P  + YN LI+G C    
Sbjct: 287 MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 346

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ + +     V  GI P   TY+ +I+ L    ++ EA  +L  +  +G  PD I Y+ 
Sbjct: 347 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYST 406

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G   +AF L++ M   G    ++TY++LI  L K  R+ EA  L    +  G
Sbjct: 407 LIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 466

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  + +N+LI G C   +++ A  L++EM+R    P  VTYN L+HG CR  +V+ A 
Sbjct: 467 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAV 526

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDN 298
            LL+Q K R +     + +   + Y++LI GLCK   G +AE L   +EM+  G+ PD  
Sbjct: 527 VLLEQAKARCVAAGGTALDT--IAYSSLIDGLCK--AGRVAEALDYFQEMIDNGVIPDHI 582

Query: 299 TYFSLIEGI 307
           TY  L+EG+
Sbjct: 583 TYSILLEGL 591



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 178/382 (46%), Gaps = 72/382 (18%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN-KGNLEMAF 65
           QPD YTY + + G C+ G +++A R  ++M+   LVP     + LIDG C  K +++   
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            FR  M   GI+     Y  L+  L  E+++ +A  +L EM + G  P+ +TYN LI+G 
Sbjct: 66  CFR-AMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 126 C-----------------------------------RCGNAKKAFSLHDEMIHK------ 144
           C                                   R G  ++A +L  EM+ +      
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 145 -GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
               P ++TY+ LI  L K NR+ +A +L E+  A+G  PD++ +  L+DG C    +  
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF----- 258
           A+ +L+EM      P+ VTYN+L+HG CR  +V +A  L+  M  RG  P+ +++     
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID 304

Query: 259 -----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
                                   P  + YN LI GLCK  + D +  LLR  VS GI P
Sbjct: 305 GLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKP 364

Query: 296 DDNTYFSLIEGIASVDKAAESS 317
           D  TY S+I G+   ++  E+ 
Sbjct: 365 DVVTYSSVIYGLCRSNRLDEAC 386



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 129/256 (50%), Gaps = 6/256 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G++PD  TY S + G+C+  RL+EA R+L  +K  G  P  + Y+TLIDG C  G ++
Sbjct: 359 SGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVD 418

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF   + M   G      TY+ LI  L    ++ EA  +L  M   G  P ++TYN LI
Sbjct: 419 EAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLI 478

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK--- 179
            G C   +  +A  L +EM      P+ +TY  LI  + +  R+  A  L E   A+   
Sbjct: 479 KGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVA 538

Query: 180 --GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G   D + +++LIDG C  G +  A    +EM    V PD +TY+ L+ G  +   + 
Sbjct: 539 AGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLH 598

Query: 238 EARRL-LDQMKRRGIK 252
           E R L LDQM + G +
Sbjct: 599 ELRHLVLDQMVQLGYR 614


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 175/309 (56%), Gaps = 11/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN--- 57
           M  R +QP+ +T+   ++ +CK G++ +A  ++E MK  G  P  V+YNTLIDGYC    
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGG 273

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
            G +  A +   EMV+  + P  +T+N+LI     +  +  +  + KEM ++ ++P+ IT
Sbjct: 274 NGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVIT 333

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LING C  G   +A  + D+M+  G+QP ++TY SLI    K   M EA  +F++  
Sbjct: 334 YNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVK 393

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G  P   M+N LID +C  G I+  F+L +EM+R  + PD  TYN L+ G CR G +E
Sbjct: 394 GQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE 453

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A++L DQ+  +G+        P  +T++ L++G C   E   A  LL+EM   G+ P  
Sbjct: 454 AAKKLFDQLTNKGL--------PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRH 505

Query: 298 NTYFSLIEG 306
            TY  +++G
Sbjct: 506 LTYNIMMKG 514



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/296 (35%), Positives = 164/296 (55%), Gaps = 9/296 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+  T+   + G  K+  L  + ++ ++M +  ++P  +TYN+LI+G CN G +  A 
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAI 351

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
             RD+MV  G+ P   TY+ LI+       M EA DM   +  +G  P +  YN+LI+ Y
Sbjct: 352 GMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAY 411

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G     F+L +EM  +GI P + TY  LI  L +   +  A +LF+    KG LPD+
Sbjct: 412 CKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG-LPDL 470

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V F+ L++G+C+ G   +A  LLKEM +M + P  +TYN +M G C++G ++ A  +  Q
Sbjct: 471 VTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQ 530

Query: 246 M-KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           M K R ++ +  S       YN L+QG  +  + + A  LL EM+ KG+ P+  TY
Sbjct: 531 MEKERRLRMNVAS-------YNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 32/325 (9%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73
           SF+ G  + G   +   +   +   + +   ++  + L+  Y N    E+ F        
Sbjct: 122 SFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGY 181

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
            G   +A +   L+  LL + +  + + + KEM  + I P+  T+N++IN  C+ G   K
Sbjct: 182 YGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNK 241

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
           A  + ++M   G  P +++Y +LI     L    +M +AD + +  +   + P++  FN 
Sbjct: 242 ARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNI 301

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LIDG   + N+  +  + KEM    V P+ +TYN+L++G C  GK+ EA  + D+M   G
Sbjct: 302 LIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAG 361

Query: 251 IKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAE 282
           ++P+ I+++                            PT   YN LI   CK  + D   
Sbjct: 362 VQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGF 421

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI 307
            L  EM  +GI PD  TY  LI G+
Sbjct: 422 ALKEEMEREGIVPDVGTYNCLIAGL 446



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 17/142 (11%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  T+   + G C  G   +A+ +L++M + GL P  +TYN ++ GYC +GNL+ A + 
Sbjct: 468 PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNM 527

Query: 68  RDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           R +M K+  +    ++YN+L+     + K+ +A+ +L EM EKG+VP+ ITY I      
Sbjct: 528 RTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEI------ 581

Query: 127 RCGNAKKAFSLHDEMIHKGIQP 148
                     + +EM+ KG  P
Sbjct: 582 ----------VKEEMVDKGFVP 593



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 17/115 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
           M   G++P   TY   + G CKEG L+ A+ M  QM KE  L     +YN L+ GY  KG
Sbjct: 496 MSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
            LE A    +EM+++G++P   TY     E++ E           EM +KG VPD
Sbjct: 556 KLEDANMLLNEMLEKGLVPNRITY-----EIVKE-----------EMVDKGFVPD 594


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 166/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K  GV P  + Y + ++ MCK+G+L+EA  +   M   GL P  VTY+ LID +C +G 
Sbjct: 346 VKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGK 405

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A  F  +M + GI  T   Y+ LI       K+  A  +  EM   G+ P+ + Y  
Sbjct: 406 LDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTS 465

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    AF L+ EM  KGI P   T+T+LI  L   NRM EA++LF   +   
Sbjct: 466 LISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWN 525

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V +N LI+GHC  GN  RAF LL EM    + PD  TY  L+ G C  G+V EAR
Sbjct: 526 VIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAR 585

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             ++ ++    K + + F       +AL+ G CK    D A +  REM+ +G+  D   Y
Sbjct: 586 EFMNDLQGEQQKLNEMCF-------SALLHGYCKEGRLDDALDACREMLGRGVAMDLVCY 638

Query: 301 FSLIEGI 307
             LI GI
Sbjct: 639 SVLIYGI 645



 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +G++ D  TY + V G+CK    E    M+ +M E G VP+    + L+DG   KGN
Sbjct: 276 LSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGN 335

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   +++ K G+ P+   YN LI+ +  + K+ EA+ +   MG KG+ P+ +TY+I
Sbjct: 336 IGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSI 395

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ G    A     +M   GI+ T+  Y+SLI    K  ++  A  LF+  +A G
Sbjct: 396 LIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG 455

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V++ +LI G+C  G +  AF L  EM    + P+  T+  L+ G C   ++ EA 
Sbjct: 456 LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M    + P+ +       TYN LI+G CK      A ELL EMV KG+ PD  TY
Sbjct: 516 KLFGEMVEWNVIPNEV-------TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTY 568

Query: 301 FSLIEGIASVDKAAES 316
             LI G+ S  + +E+
Sbjct: 569 RPLISGLCSTGRVSEA 584



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 173/346 (50%), Gaps = 31/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++   Y Y S +SG CK G+L  A  + ++M  NGL P  V Y +LI GYC +G 
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF    EM  +GI P   T+  LI  L    +M EA+ +  EM E  ++P+ +TYN+
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ GN  +AF L DEM+ KG+ P   TY  LI  L    R+ EA +   +   + 
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              + + F+AL+ G+C  G ++ A    +EM    V  D V Y+ L++G  RQ       
Sbjct: 596 QKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSII 655

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL QM  +G++PD++ +                             P  +TY ALI GL
Sbjct: 656 DLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGL 715

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           CK    D AE L REM++    P+ NTY   ++ + S   ++KA +
Sbjct: 716 CKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ 761



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 187/422 (44%), Gaps = 111/422 (26%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++YT+ + +SG+C   R+ EA+++  +M E  ++P  VTYN LI+G+C +GN
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 61  LEMAFSFRDEMVKQGIMPTASTY-----------------------------------NL 85
              AF   DEMV++G++P   TY                                   + 
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSA 605

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR------------------ 127
           L+H    E ++ +A D  +EM  +G+  D + Y++LI G  R                  
Sbjct: 606 LLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQG 665

Query: 128 -----------------CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
                             GN K AF L D M+ +G  P ++TYT+LI  L K   M +A+
Sbjct: 666 LRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAE 725

Query: 171 QLFENFLA----------------------------------KGMLPDIVMFNALIDGHC 196
            L    LA                                  +G L + V +N LI G C
Sbjct: 726 LLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFC 785

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G I+ A  +L  M    + PD ++Y+T+++  CR+G ++EA +L + M  RG+ PD +
Sbjct: 786 KLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTV 845

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +       YN LI G C   E   A EL  +M+ +G+ P+  TY SLI G   +   + +
Sbjct: 846 A-------YNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSST 898

Query: 317 SN 318
           ++
Sbjct: 899 AD 900



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 153/345 (44%), Gaps = 28/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   T    ++G+ +  +   A  + +++  +GL P    Y  ++   C   +
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M   G   + +TYN+ I  L   +++ EA ++   +  KG+  D  TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+    +    + +EMI  G  P+    ++L+  L K+  +  A  L       G
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFG 350

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P + ++NALI+  C +G ++ A SL   M    + P++VTY+ L+   C++GK++ A 
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L +M   GIK     ++                            P  + Y +LI G 
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           CK  E   A  L  EM  KGI+P+  T+ +LI G+   ++ AE++
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 117/275 (42%), Gaps = 29/275 (10%)

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           SF D   K     T   ++LLI   +  R+ ++   +++ M + GI+P   T + ++NG 
Sbjct: 132 SFLDSYRKCNFSTTLG-FDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGL 190

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            R    + A  L DE++  G++P +  YT+++  L +    I A ++     + G    +
Sbjct: 191 IRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSV 250

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +N  I G C N  +  A  +   +    +  D  TY TL+ G C+  + E    ++++
Sbjct: 251 ATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNE 310

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
           M   G  P   + +                            P+   YNALI  +CK+ +
Sbjct: 311 MIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK 370

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            D AE L   M  KG+ P+D TY  LI+      K
Sbjct: 371 LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGK 405


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 173/307 (56%), Gaps = 7/307 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P        + G+ K+GR +   ++   M   G  P  VTY TLIDG C +G+   AF
Sbjct: 154 VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAF 213

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM+++ I PT   Y +LI  L  E ++ EA+ M + M   G++P+  TYN +++GY
Sbjct: 214 RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGY 273

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+  + KKA  L+ EM+  G+ P ++T+  LI  L K + M+ A +   +  + G++P+I
Sbjct: 274 CKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNI 333

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            ++N LIDG+C  GN+  A SL  E+++ ++ PD  TY+ L+ G C   ++EEA  LL +
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MK++G       F P  +TYN LI G CK    + A E+  +M  KGI P+  T+ +LI+
Sbjct: 394 MKKKG-------FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLID 446

Query: 306 GIASVDK 312
           G     K
Sbjct: 447 GYCKAGK 453



 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P    Y   + G+C E R+ EA  M   M+ +G++P   TYNT++DGYC   +
Sbjct: 219 MIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM+  G++P   T+ +LI  L    +MV A   L +M   G+VP+   YN 
Sbjct: 279 VKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNC 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN  +A SLH E+    I P + TY+ LI  L   +RM EAD L +    KG
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+ V +N LIDG+C  GN+E+A  +  +M    + P+ +T++TL+ G C+ GK+E A 
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G+ PD ++       Y ALI G  K+     A  L +EM   G+ P+  T 
Sbjct: 459 GLYTEMVIKGLLPDVVA-------YTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTL 511

Query: 301 FSLIEGIA 308
             LI+G+ 
Sbjct: 512 SCLIDGLC 519



 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 147/243 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  T+G  + G+CK   +  A + L  M   G+VP    YN LIDGYC  GN
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S   E+ K  I+P   TY++LI  L    +M EAD +L+EM +KG +P+++TYN 
Sbjct: 349 LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN +KA  +  +M  KGI+P ++T+++LI    K  +M  A  L+   + KG
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKG 468

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V + ALIDGH  +GN + AF L KEM    +HP+  T + L+ G C+ G++ +A 
Sbjct: 469 LLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAI 528

Query: 241 RLL 243
           +L 
Sbjct: 529 KLF 531



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 149/287 (51%), Gaps = 16/287 (5%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           +L +++ +   P    +  LI  +   G +E A     +M    ++P     N+++  L+
Sbjct: 115 VLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVLDGLV 169

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            + +      +  +M  +G  P+ +TY  LI+G CR G+  KAF L DEMI K I PT++
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            YT LI  L  ++R+ EA+ +F      GMLP++  +N ++DG+C   ++++A  L +EM
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM 289

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
               + P+ VT+  L+ G C+  ++  AR+ L  M   G+ P+          YN LI G
Sbjct: 290 LGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN-------IFVYNCLIDG 342

Query: 272 LCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            CK   G+L+E   L  E+    I PD  TY  LI+G+  VD+  E+
Sbjct: 343 YCK--AGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 34/256 (13%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P  +   S +S     G + +A  M +++    L+    ++ ++I  Y +      A
Sbjct: 661 GFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNLI----SWTSVISAYVDNQRPNKA 716

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE--------KGIVPDSI 116
                +M    + P   T  + +           AD    +MGE        +G+  D  
Sbjct: 717 LQLFRQMQMDDVQPDIVTVTVALSAC--------ADLGALDMGEWIHAYIRHRGLDTDLC 768

Query: 117 TYNILINGYCRCGNAKKA--FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             N LIN Y +CG    A  FSL        + P  +T+  ++   S    + E  Q F 
Sbjct: 769 LNNSLINMYSKCGEIGTARRFSL--------VLPNDVTFMGVLMACSHAGLVEEGKQHFR 820

Query: 175 NFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           +      L P I  F  ++D  C  G +  A+  +    +M V P+ V + TL+     Q
Sbjct: 821 SMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFIL---KMPVRPNAVVWRTLLGACSLQ 877

Query: 234 GKVEEARRLLDQMKRR 249
           G  ++   + +Q+K+R
Sbjct: 878 GMWDKKMLVRNQIKQR 893



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +F  LI      G +E A  +  +MD   V P     N ++ G  ++G+ +   ++   M
Sbjct: 128 VFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             RG  P+ +       TY  LI G C+  +   A  L  EM+ K I P    Y  LI G
Sbjct: 185 VARGASPNVV-------TYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRG 237

Query: 307 IASVDKAAESSN 318
           +    + +E+ +
Sbjct: 238 LCGESRISEAES 249



 Score = 44.7 bits (104), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           +H  +I+ G +P +   TSLI + S    + +A  +F+   +K    +++ + ++I  + 
Sbjct: 653 MHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSK----NLISWTSVISAYV 708

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            N    +A  L ++M    V PD VT    +      G ++    +   ++ RG+  D
Sbjct: 709 DNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTD 766


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 185/376 (49%), Gaps = 64/376 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+  TY + +SG+C  GR+ +A  + E+M + G  P  VTYNTL+ G+C  G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D  VK+G +P   TYN LI+      K+ EA  +L+ M  + +VPD +TYN 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 121 LINGYCRCG---------------------------------NAKKAFSLHDEMIHKGIQ 147
           L+NG C+ G                                    +A  L   ++ +G +
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE 180

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P + TY  LI  L K++R+ EA +LF   +  G+ PD + +   IDG C  G +E A  +
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------- 259
           LK+MD     PD V++N +++G C++ +V+EA  LL  M+ +G  P+ ISFN        
Sbjct: 241 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 300

Query: 260 --------------------PTRLTYNALIQGLCK-NQEGDLAEE--LLREMVSKGITPD 296
                               PT +TYN L+ GLCK  QEG + E   L   M+ KG  PD
Sbjct: 301 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPD 360

Query: 297 DNTYFSLIEGIASVDK 312
             TY +LI+G+    K
Sbjct: 361 VVTYSALIDGLGKAGK 376



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/320 (37%), Positives = 180/320 (56%), Gaps = 14/320 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK-G 59
           M S  + PD  TY S V+G+CK GR++EA RML  + + G  P  +TY+TLI G C +  
Sbjct: 106 MVSENLVPDVVTYNSLVNGLCKNGRVDEA-RML--IVDKGFSPNVITYSTLISGLCRELR 162

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  A      ++KQG  P   TYN+LI  LL E ++ EA ++   + + G+ PD+ITY 
Sbjct: 163 GVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYT 222

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           + I+G C+ G  + A  +  +M  KG  P ++++ ++I  L K+ R+ EA+ L     AK
Sbjct: 223 VFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAK 282

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR---QGKV 236
           G  P+ + FN LI G C  G  ++A +  KEM +  V P  VTYN L+ G C+   +G++
Sbjct: 283 GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRI 342

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +EA  L D M  +G  PD +       TY+ALI GL K  + D A  LL  M +KG  P+
Sbjct: 343 KEAITLFDAMIEKGRVPDVV-------TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 395

Query: 297 DNTYFSLIEGIASVDKAAES 316
             TY SLI G+  ++K  E+
Sbjct: 396 VYTYNSLISGLCGLEKVDEA 415



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 95/258 (36%), Positives = 150/258 (58%), Gaps = 3/258 (1%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G +P+  TY   + G+ KE R+ EA  +   + ++GL P A+TY   IDG C  G +E 
Sbjct: 177 QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVED 236

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M ++G +P   ++N +I+ L  E+++ EA+ +L  M  KG  P++I++N LI 
Sbjct: 237 ALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLIC 296

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK---QNRMIEADQLFENFLAKG 180
           G CR G  KKA +   EM+ +G++PT++TY  L+  L K   + R+ EA  LF+  + KG
Sbjct: 297 GQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKG 356

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V ++ALIDG    G ++ A  LL  M+     P+  TYN+L+ G C   KV+EA 
Sbjct: 357 RVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEAL 416

Query: 241 RLLDQMKRRGIKPDHISF 258
            L   M  +G  PD I++
Sbjct: 417 ELFVAMVEKGCVPDTITY 434



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 3/226 (1%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++PD+ TY  F+ G+CK GR+E+A  ML+ M E G VP  V++N +I+G C +  ++ A
Sbjct: 213 GLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA 272

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M  +G  P A ++N LI       K  +A    KEM ++G+ P  +TYNIL++G
Sbjct: 273 EVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDG 332

Query: 125 YCRC---GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            C+    G  K+A +L D MI KG  P ++TY++LI  L K  ++ +A +L     AKG 
Sbjct: 333 LCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGC 392

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           +P++  +N+LI G C    ++ A  L   M      PD +TY T++
Sbjct: 393 IPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 7/137 (5%)

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+ + +NAL+ G C  G +  A +L + M +    PD VTYNTL+HG C+ G+++EA
Sbjct: 5   GFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEA 64

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            ++ D   +RG  PD +       TYNALI G CK  + D A+ +L+ MVS+ + PD  T
Sbjct: 65  LKIFDGAVKRGFVPDVV-------TYNALINGFCKADKLDEAQRILQRMVSENLVPDVVT 117

Query: 300 YFSLIEGIASVDKAAES 316
           Y SL+ G+    +  E+
Sbjct: 118 YNSLVNGLCKNGRVDEA 134



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 3/126 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK---EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           M  RGV+P   TY   V G+CK   EGR++EA  + + M E G VP  VTY+ LIDG   
Sbjct: 314 MLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGK 373

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
            G L+ A      M  +G +P   TYN LI  L    K+ EA ++   M EKG VPD+IT
Sbjct: 374 AGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTIT 433

Query: 118 YNILIN 123
           Y  +I+
Sbjct: 434 YGTIIS 439


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 180/334 (53%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R V PD  ++   +    + G ++ A   L +MK  GLVP  V Y  +I G+C  G+
Sbjct: 288 MQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEMV  G +P   TYN L++ L  + ++++A+ +L EM E+G+ PD  T+  
Sbjct: 348 MSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTT 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR GN + A  L D ++ + ++P ++TY SLI  + ++  + +A++L+++  A+ 
Sbjct: 408 LIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ + ++ LID HC  G +E AF  L EM +    P+  TYN+++ G CR G V++ +
Sbjct: 468 ILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQ 527

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           + L +M++  + PD I+FN                            P  +TYN +I G 
Sbjct: 528 QFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGF 587

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +      A  + + M   GI PD  TY SLI G
Sbjct: 588 SEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLING 621



 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 170/306 (55%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++P   TY S + G+CK  R ++A  +   M +  + P   ++N LI G+C  G 
Sbjct: 218 MANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGE 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F  EM  + + P   +++ LI       +M  A   L+EM   G+VPD + Y +
Sbjct: 278 VKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTM 337

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+CR G+  +A  + DEM+  G  P ++TY +L+  L KQ+R+++A++L      +G
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERG 397

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  F  LI G+C  GN E A  L   + R ++ PD VTYN+L+ G CR+G + +A 
Sbjct: 398 VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKAN 457

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M  R I P+HI       TY+ LI   C+  + + A   L EMV KG  P+  TY
Sbjct: 458 ELWDDMHAREILPNHI-------TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTY 510

Query: 301 FSLIEG 306
            S+I+G
Sbjct: 511 NSIIKG 516



 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 163/297 (54%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY + ++G+CK+ RL +A ++L +M+E G+ P   T+ TLI GYC +GN
Sbjct: 358 MVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGN 417

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    D +++Q + P   TYN LI  +  +  + +A+++  +M  + I+P+ ITY+I
Sbjct: 418 FENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSI 477

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C  G  + AF   DEM+ KG  P + TY S+I    +   + +  Q  +      
Sbjct: 478 LIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDN 537

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ FN LI G+    N+  AF++   M++  V PD VTYN +++G   QG +++A 
Sbjct: 538 VFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAG 597

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           R+   M   GI+PD       R TY +LI G         A +L  EM+ +G  PDD
Sbjct: 598 RVFKGMGDSGIEPD-------RYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPDD 647



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 171/327 (52%), Gaps = 32/327 (9%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++YT    V   CK    + A  ++ +M++  + P  VT+N LID     G+++ A +  
Sbjct: 156 NAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D M  +G+ P   TYN ++  L   R+  +A ++ + M +  + PD  ++NILI G+CR 
Sbjct: 216 DSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRV 275

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  K+A   + EM H+ + P +++++ LI + S++  M  A          G++PD V++
Sbjct: 276 GEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIY 335

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             +I G C  G++  A  +  EM      PD VTYNTL++G C+Q ++ +A +LL++M+ 
Sbjct: 336 TMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEE 395

Query: 249 RGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDL 280
           RG+ PD  +F                             P  +TYN+LI G+C+  +GDL
Sbjct: 396 RGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCR--KGDL 453

Query: 281 AE--ELLREMVSKGITPDDNTYFSLIE 305
           A+  EL  +M ++ I P+  TY  LI+
Sbjct: 454 AKANELWDDMHAREILPNHITYSILID 480



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           P    +++LI  Y +    ++AF     ++   +        +L+ VLS+      A + 
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEA 144

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           +   L+     +    N ++  +C     + A +++ EM++  V PD VT+N L+  R R
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFR 204

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            G V+ A  L+D M  RG+KP  +       TYN++++GLCK++  D A+E+ R M    
Sbjct: 205 AGDVDAAIALVDSMANRGLKPGIV-------TYNSVLKGLCKHRRFDKAKEVFRTMDQCS 257

Query: 293 ITPDDNTYFSLIEGIASVDKAAES 316
           + PD  ++  LI G   V +  E+
Sbjct: 258 VAPDVRSFNILIGGFCRVGEVKEA 281


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 182/314 (57%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+QP   T+ + +SG+C + ++ +A ++ ++M + G  P  +TY+T+I+G C  GN  MA
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M ++G  P    YN +I  L  +R + EA D   EM ++GI PD  TY+ +++G
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G   +A SL  +M+ + + P  +T+T LI  L K+  + EA  +FE    KG+ PD
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPD 184

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +NAL+DG+C+   ++ A  L   MDR    P+  +YN L++G C+ G+++EA+ LL 
Sbjct: 185 VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLA 244

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  + + PD         TY+ L++G C+      A+ELL+EM S G+ P+  TY  ++
Sbjct: 245 EMSHKSLTPDI-------FTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVL 297

Query: 305 EGIAS---VDKAAE 315
           +G+     +D+A E
Sbjct: 298 DGLCKHGHLDEAFE 311



 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 168/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD +TY S + G C  GR+ EA+ + +QM E  ++P  VT+  LIDG C K  
Sbjct: 106 MVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRM 165

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+   + M ++G+ P   TYN L+       +M EA  +   M  KG  P+  +YNI
Sbjct: 166 ISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNI 225

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+ G   +A  L  EM HK + P + TY++L+    +  R  EA +L +   + G
Sbjct: 226 LINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG 285

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+++ ++ ++DG C +G+++ AF LLK M   K+ P+   Y  L+ G C  GK+E AR
Sbjct: 286 LLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAAR 345

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +GI+       PT +TY  +I GL K    + A EL REM   G  P+  TY
Sbjct: 346 ELFSNLFVKGIQ-------PTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTY 398

Query: 301 FSLIEGI 307
             +I+G 
Sbjct: 399 NVIIQGF 405



 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 178/312 (57%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  TY + ++G+CK G    A ++L++M+E G  P  V YNT+ID  C    
Sbjct: 36  MVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRL 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  EMVK+GI P   TY+ ++H      ++ EA  + K+M E+ ++P+ +T+ I
Sbjct: 96  VTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTI 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+     +A+ + + M  KG++P + TY +L+     +++M EA +LF     KG
Sbjct: 156 LIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKG 215

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  +N LI+GHC +G I+ A  LL EM    + PD  TY+TLM G C+ G+ +EA+
Sbjct: 216 CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQ 275

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M   G+ P+ I       TY+ ++ GLCK+   D A ELL+ M    I P+   Y
Sbjct: 276 ELLKEMCSYGLLPNLI-------TYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIY 328

Query: 301 FSLIEGIASVDK 312
             LIEG+ +  K
Sbjct: 329 TILIEGMCTFGK 340



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/277 (36%), Positives = 149/277 (53%), Gaps = 7/277 (2%)

Query: 40  GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99
           GL PT VT+NTL+ G C+K  +  A    DEMVK G  P   TY+ +I+ L        A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
             +LK+M EKG  P+ + YN +I+  C+     +A     EM+ +GI P + TY+S++  
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
                R+ EA  LF+  + + ++P+ V F  LIDG C    I  A+ + + M    + PD
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPD 184

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             TYN L+ G C + +++EA++L + M R+G  P+  S       YN LI G CK+   D
Sbjct: 185 VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRS-------YNILINGHCKSGRID 237

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A+ LL EM  K +TPD  TY +L+ G   V +  E+
Sbjct: 238 EAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEA 274



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 133/258 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PD YTY + V G C   +++EA ++   M   G  P   +YN LI+G+C  G 
Sbjct: 176 MTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGR 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM  + + P   TY+ L+       +  EA ++LKEM   G++P+ ITY+I
Sbjct: 236 IDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSI 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C+ G+  +AF L   M    I+P +  YT LI  +    ++  A +LF N   KG
Sbjct: 296 VLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKG 355

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +  +I G    G    A  L +EM      P+  TYN ++ G  R G    A 
Sbjct: 356 IQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAV 415

Query: 241 RLLDQMKRRGIKPDHISF 258
           RL+++M  +G   D  +F
Sbjct: 416 RLIEEMVGKGFSADSSTF 433



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 114/226 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  +Y   ++G CK GR++EA  +L +M    L P   TY+TL+ G+C  G 
Sbjct: 211 MDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGR 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM   G++P   TY++++  L     + EA ++LK M E  I P+   Y I
Sbjct: 271 PQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTI 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G  + A  L   +  KGIQPT++TYT +I  L K     EA +LF      G
Sbjct: 331 LIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNG 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            LP+   +N +I G   NG+   A  L++EM       D  T+  L
Sbjct: 391 CLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRML 436



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 95/193 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD +TY + + G C+ GR +EA  +L++M   GL+P  +TY+ ++DG C  G+
Sbjct: 246 MSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGH 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF     M +  I P    Y +LI  +    K+  A ++   +  KGI P  +TY +
Sbjct: 306 LDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTV 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G + +A  L  EM   G  P   TY  +I    +      A +L E  + KG
Sbjct: 366 MISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKG 425

Query: 181 MLPDIVMFNALID 193
              D   F  L D
Sbjct: 426 FSADSSTFRMLSD 438



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 7/139 (5%)

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P +V FN L+ G C+   I  A  L  EM +M   PD +TY+T+++G C+ G    A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +LL +M+ +G KP+ ++       YN +I  LCK++    A +   EMV +GI PD  T
Sbjct: 65  LQLLKKMEEKGCKPNVVA-------YNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFT 117

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y S++ G  ++ +  E+++
Sbjct: 118 YSSILHGFCNLGRVNEATS 136



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +   PT +T+N L+ GLC   +   A +L  EMV  G  PD  TY ++I G+ 
Sbjct: 4   LGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLC 56


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/288 (37%), Positives = 167/288 (57%), Gaps = 7/288 (2%)

Query: 31  RMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
           R  ++M+ NG +P  VTYNT+IDGYC     + AF F   M  +G+ P   T+N++I+ L
Sbjct: 4   RFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGL 63

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
             + ++ E  ++L EM  KG VPD +TYN L+NGYC+ GN  +A  LH EM+  G+ P +
Sbjct: 64  CRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNV 123

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           +TYTSLI  + K   +  A + F+    +G+ P+   +  +I+G    G ++ A+ +L E
Sbjct: 124 VTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNE 183

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M R    P  VTYN L++G C  G++EEA  LL  M  +G+ PD +S       Y+ +I 
Sbjct: 184 MTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVS-------YSTIIS 236

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           G  +NQE D A ++  EM+ K + PD  TY SLI+G+    +  E+ +
Sbjct: 237 GFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACD 284



 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 175/318 (55%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P+  T+   ++G+C++GRL+E S +L +M   G VP  VTYNTL++GYC +GN
Sbjct: 44  MGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGN 103

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EMV+ G+ P   TY  LI+ +     +  A +   +M  +G+ P+  TY  
Sbjct: 104 FHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTT 163

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G   +A+ + +EM   G  P+++TY +LI       RM EA  L ++ + KG
Sbjct: 164 IINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V ++ +I G   N  ++RAF +  EM    V PD VTY++L+ G C Q ++ EA 
Sbjct: 224 VLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEAC 283

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            +  +M    + PD         TY  LI   CK  EGDL  A  L  EM+ KG  PD  
Sbjct: 284 DMFQEMLTIKLPPD-------EFTYTTLINAYCK--EGDLNKALHLHDEMIQKGFLPDAV 334

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  LI G+    ++ E+
Sbjct: 335 TYNVLINGLNKQARSKEA 352



 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 168/311 (54%), Gaps = 7/311 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD  TY + V+G CKEG   +A  +  +M  NGL P  VTY +LI+  C  GN
Sbjct: 79  MSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGN 138

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A  F D+M  +G+ P   TY  +I+    +  + EA  +L EM   G +P  +TYN 
Sbjct: 139 LNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNA 198

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C  G  ++A  L  +M+ KG+ P +++Y+++I   ++   +  A Q+    + K 
Sbjct: 199 LINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKS 258

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD V +++LI G C    +  A  + +EM  +K+ PDE TY TL++  C++G + +A 
Sbjct: 259 VLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKAL 318

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M ++G  PD +       TYN LI GL K      A  LL ++      P   TY
Sbjct: 319 HLHDEMIQKGFLPDAV-------TYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTY 371

Query: 301 FSLIEGIASVD 311
            +LIE   +++
Sbjct: 372 NTLIENCCNIE 382



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 171/350 (48%), Gaps = 43/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+  TY S ++ MCK G L  A    +QM   GL P   TY T+I+G+  +G 
Sbjct: 114 MVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGL 173

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+   +EM + G +P+  TYN LI+   +  +M EA  +L++M  KG++PD ++Y+ 
Sbjct: 174 LDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYST 233

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ R     +AF +  EMI K + P  +TY+SLI  L +Q R+ EA  +F+  L   
Sbjct: 234 IISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIK 293

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LI+ +C  G++ +A  L  EM +    PD VTYN L++G  +Q + +EAR
Sbjct: 294 LPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEAR 353

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------------------- 259
           RLL ++      P  +++N                                         
Sbjct: 354 RLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKN 413

Query: 260 --PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             P    YN +I G C+      A +L +EMV     P   T  +L++ +
Sbjct: 414 HKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKAL 463



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 161/353 (45%), Gaps = 65/353 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   TY + ++G C  GR+EEA  +L+ M   G++P  V+Y+T+I G+     
Sbjct: 184 MTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQE 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF  + EM+ + ++P A TY+ LI  L  +R++ EA DM +EM    + PD  TY  
Sbjct: 244 LDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTT 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR--------------- 165
           LIN YC+ G+  KA  LHDEMI KG  P  +TY  LI  L+KQ R               
Sbjct: 304 LINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDD 363

Query: 166 -----------------------------------MIEADQLFENFLAKGMLPDIVMFNA 190
                                              M EADQ+FE+ + K   P+  ++N 
Sbjct: 364 SIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNV 423

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +I GHC  GN+ +A+ L KEM  +   P  VT   L+     +G   E   ++  + R  
Sbjct: 424 IIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILR-- 481

Query: 251 IKPDHISFNPTRLTYNALIQGLCK--NQEG--DLAEELLREMVSKGITPDDNT 299
                      +LT   L + L +   +EG  D+   LL EM   G+ P   T
Sbjct: 482 ---------SCKLTDAELSKVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGT 525



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + V G C +G ++EA ++ E M      P    YN +I G+C  GN+  A+    EMV  
Sbjct: 388 ALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHV 447

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
             +P   T   L+  L  E    E ++++ ++     + D+    +L+    + GN    
Sbjct: 448 DFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEINQKEGNMDMV 507

Query: 135 FSLHDEMIHKGIQPTMLTYTSLI 157
           F+L  EM   G+ P+  T T+ I
Sbjct: 508 FNLLTEMAKDGLIPSTGTPTNAI 530


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 184/342 (53%), Gaps = 28/342 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+ YT+   ++ +CKEG++++A  + +++++ GL PTAV++NTLI+GYC  GNLE  
Sbjct: 227 GYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEG 286

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M +  + P   TY+ LI  L  E ++ +A+ + KEM ++G+VP+ +T+  LING
Sbjct: 287 FRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLING 346

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A  ++ +M  KG++  ++ Y +LI  L K     EA +       +G++PD
Sbjct: 347 QCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPD 406

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  L+DG C  G++E A  + KEM +  +  D V +  ++ G CR GK+ +A R L 
Sbjct: 407 KFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLR 466

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M R G+KPD  ++                             P  +TYN L+ GLCK  
Sbjct: 467 EMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQG 526

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +   A+ LL  M++ G+ PDD TY  L++G     K  +  N
Sbjct: 527 QVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQN 568



 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 174/312 (55%), Gaps = 10/312 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   V PD +TY + + G+CKE +LE+A+ + ++M + GLVP  VT+ TLI+G C  G 
Sbjct: 293 MEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGR 352

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M  +G+      YN LI  L       EA   + EM ++G++PD  TY  
Sbjct: 353 VDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTT 412

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G+ + A  +  EM+ +GIQ   + +T++I  L +  ++++A++     L  G
Sbjct: 413 LLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAG 472

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  ++DG C  G+++  F LLKEM      P  +TYN LM+G C+QG+V+ A 
Sbjct: 473 LKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNAD 532

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M   G+ PD I       TYN L+QG CK+ +    + +  EM   G+  D  +Y
Sbjct: 533 MLLNAMLNLGVVPDDI-------TYNILLQGHCKHGKLGDFQNVKTEM---GLVSDYASY 582

Query: 301 FSLIEGIASVDK 312
            SL+  ++   K
Sbjct: 583 RSLLHELSKASK 594



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 172/319 (53%), Gaps = 7/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++++G    S+ + + +S   + G + +A +     K++ L         L++      +
Sbjct: 153 LETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSS 212

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A  F  E++  G  P   T+N+L++ L  E K+ +A  +  E+ + G+ P ++++N 
Sbjct: 213 PMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNT 272

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ GN ++ F L   M    + P + TY++LI  L K+ ++ +A+ LF+    +G
Sbjct: 273 LINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRG 332

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V F  LI+G C NG ++ A  + ++M    +  D V YNTL+ G C+ G   EAR
Sbjct: 333 LVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREAR 392

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + + +M +RG+ PD       + TY  L+ G CK  + +LA E+ +EMV +GI  D+  +
Sbjct: 393 KFVGEMTKRGLIPD-------KFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAF 445

Query: 301 FSLIEGIASVDKAAESSNS 319
            ++I G+    K  ++  +
Sbjct: 446 TAIISGLCRDGKIVDAERT 464



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 150/274 (54%), Gaps = 7/274 (2%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
           ++ ++G  P   T+N L++  C +G ++ A    DE+ K G+ PTA ++N LI+      
Sbjct: 222 EILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSG 281

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
            + E   +   M E  + PD  TY+ LI+G C+    + A  L  EM  +G+ P  +T+T
Sbjct: 282 NLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFT 341

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           +LI    K  R+  A ++++    KG+  D+V++N LIDG C  G    A   + EM + 
Sbjct: 342 TLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKR 401

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + PD+ TY TL+ G C++G +E A  +  +M + GI+ D+++F        A+I GLC+
Sbjct: 402 GLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAF-------TAIISGLCR 454

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + +   AE  LREM+  G+ PDD TY  +++G  
Sbjct: 455 DGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFC 488


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 188/338 (55%), Gaps = 42/338 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G   ++ T  + + G+C+ G  EEA+++L++M E GLV  +++YNTLI   C +G +E 
Sbjct: 436 KGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEE 495

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
            F  ++EMV++GI P   TYN+L+H L    K+ EA  +  E  + G  PD+ TY I+I+
Sbjct: 496 GFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMID 555

Query: 124 GYCRC-----------------------------------GNAKKAFSLHDEMIHKGIQP 148
           GYC+                                    GN ++AF L D+M  +GI  
Sbjct: 556 GYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQ 615

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T  TY+SLI  LS    +  A+QL +    +G+ P++V + ALI G+C  G + +  S+L
Sbjct: 616 TSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSIL 675

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           +EM    VHP+++TY  +++G C+ G ++ A +LL++M ++GI PD +       TYNAL
Sbjct: 676 QEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAV-------TYNAL 728

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             G CK  + + A ++   M + GI+ DD TY +LI+G
Sbjct: 729 TNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDG 766



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 173/347 (49%), Gaps = 42/347 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV PD Y + + V+  C  GR+++A  +  +M++ G+ P  VTYN +I G C  G L+ A
Sbjct: 192 GVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEA 251

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F F+++M K+ + P+  TY +LI+ L+   +  EA+ +LKEM ++G  P+++ YN LI+G
Sbjct: 252 FQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDG 311

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG---- 180
           YCR GN   A  + D+MI  GI P  +T  SLI    K N+M  A+ L E  L  G    
Sbjct: 312 YCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVIN 371

Query: 181 --------------------------ML-----PDIVMFNALIDGHCTNGNIERAFSLLK 209
                                     ML     P+  +   L+ G C NG    A  L  
Sbjct: 372 QGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWY 431

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            +       + VT N L+HG C  G  EEA +LL +M  RG+  D IS       YN LI
Sbjct: 432 RLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSIS-------YNTLI 484

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              CK  + +   +L  EMV +GI PD  TY  L+ G+ ++ K  E+
Sbjct: 485 LACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEA 531



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 163/315 (51%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   V+P   TYG  ++G+ K  R +EA+ +L++M + G  P  V YNTLIDGYC  GN
Sbjct: 258 MEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGN 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RD+M+  GI P + T N LI       +M  A+ +L+EM   G V +  T+  
Sbjct: 318 ISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTS 377

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C       A     EM+ +  +P     T L+  L +  +  EA +L+   L KG
Sbjct: 378 VIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKG 437

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              + V  NALI G C  G+ E A  LLKEM    +  D ++YNTL+   C++GKVEE  
Sbjct: 438 FAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGF 497

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L ++M RRGI+PD         TYN L+ GLC   + + A  L  E    G  PD  TY
Sbjct: 498 KLKEEMVRRGIQPD-------MYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTY 550

Query: 301 FSLIEGIASVDKAAE 315
             +I+G    ++  E
Sbjct: 551 GIMIDGYCKANRVEE 565



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 157/341 (46%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNT---------- 50
           M S G+ P+S T  S + G CK  ++E A  +LE+M   G V    T+ +          
Sbjct: 328 MISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCR 387

Query: 51  -------------------------LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                    L+ G C  G    A      ++++G      T N 
Sbjct: 388 FDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNA 447

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LIH L       EA  +LKEM E+G+V DSI+YN LI   C+ G  ++ F L +EM+ +G
Sbjct: 448 LIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRG 507

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           IQP M TY  L+  L    ++ EA  L+      G  PD   +  +IDG+C    +E   
Sbjct: 508 IQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGE 567

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L +EM  MK+  + V Y TL+   C  G + EA RL D M+ RGI         T  TY
Sbjct: 568 KLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIP-------QTSATY 620

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           ++LI GL      D A +LL EM  +G++P+   Y +LI G
Sbjct: 621 SSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGG 661



 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 165/344 (47%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R  +P+       VSG+C+ G+  EA  +  ++ E G     VT N LI G C  G+
Sbjct: 398 MLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGS 457

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EM+++G++  + +YN LI     E K+ E   + +EM  +GI PD  TYN+
Sbjct: 458 KEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNM 517

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  ++A  L  E    G  P   TY  +I    K NR+ E ++LF+  +   
Sbjct: 518 LLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMK 577

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++  LI  +C NGN+  AF L  +M    +     TY++L+HG    G V+ A 
Sbjct: 578 IEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSAN 637

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
           +LLD+M++ G+ P+ + +                            +P ++TY  +I G 
Sbjct: 638 QLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGH 697

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK      A +LL EM  KGI PD  TY +L  G     K  E+
Sbjct: 698 CKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEA 741



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 145/285 (50%), Gaps = 7/285 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           +   +   GL P+  T N L+        ++M++   D M   G+ P    ++ +++   
Sbjct: 149 LFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFC 208

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
              ++ +A ++ ++M + G+ P+ +TYN +I+G C+ G   +AF   ++M  + ++P+++
Sbjct: 209 TGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLV 268

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY  LI  L K  R  EA+ + +    +G  P+ V++N LIDG+C  GNI  A  +  +M
Sbjct: 269 TYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDM 328

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
               + P+ VT N+L+ G C+  ++E A  LL++M   G   +       + T+ ++I  
Sbjct: 329 ISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVIN-------QGTFTSVIHR 381

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LC     D A   + EM+ +   P+D     L+ G+    K +E+
Sbjct: 382 LCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEA 426



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 7/243 (2%)

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           + F     +  +G+ P+  T N L+  L+   ++  +  +   M   G+ PD   ++ ++
Sbjct: 145 VVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMV 204

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           N +C  G    A  L  +M   G+ P ++TY ++I  L K  R+ EA Q  E    + + 
Sbjct: 205 NAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVK 264

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P +V +  LI+G       + A  +LKEM      P+ V YNTL+ G CR G +  A ++
Sbjct: 265 PSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQI 324

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D M   GI P+ +       T N+LIQG CK+ + + AE LL EM++ G   +  T+ S
Sbjct: 325 RDDMISNGISPNSV-------TCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTS 377

Query: 303 LIE 305
           +I 
Sbjct: 378 VIH 380



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+   Y + + G CK G++ +   +L++M  N + P  +TY  +I+G+C  GN
Sbjct: 643 MRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGN 702

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM ++GI+P A TYN L +    E KM EA  +   M   GI  D ITY  
Sbjct: 703 MKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTT 762

Query: 121 LINGY 125
           LI+G+
Sbjct: 763 LIDGW 767


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 181/316 (57%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG +PD  TY   V+GMCKEGRL+EA + L  M   G  P  +T+N ++   C+ G 
Sbjct: 42  MGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGR 101

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EMV++G  P+  T+N+LI+ L  +  +  A D+L++M   G  P+S++YN 
Sbjct: 102 WMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNP 161

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A    + M+ +G  P ++TY +++  L K  ++  A +L     +KG
Sbjct: 162 LLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKG 221

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  ++A  LL EM    + PD +TY++L+ G  R+GKVEEA 
Sbjct: 222 CSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAI 281

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +    ++  G+KP+         TYN+++ GLCK Q+ D A + L  M+SKG  P + +Y
Sbjct: 282 KFFHDVEGFGVKPNA-------FTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSY 334

Query: 301 FSLIEGIASVDKAAES 316
             LIEGIA+   A E+
Sbjct: 335 TILIEGIANEGLAKEA 350



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 147/285 (51%), Gaps = 7/285 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           +L++  E    P  +TY  LI+  C +  +  A    DEM  +G  P   TYN+L++ + 
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            E ++ EA   L  M   G  P+ IT+NI++   C  G    A  L  EM+ KG  P+++
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVV 122

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           T+  LI  L ++  +  A  + E     G  P+ + +N L+ G C    ++RA   L+ M
Sbjct: 123 TFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIM 182

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                +PD VTYNT++   C+ GKV+ A  LL+Q+  +G        +P  +TYN +I G
Sbjct: 183 VSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGC-------SPVLITYNTVIDG 235

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L K  + D A ELL EM  KG+ PD  TY SLI G++   K  E+
Sbjct: 236 LSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEA 280



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 138/251 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+   ++ +C++G L  A  +LE+M  +G  P +++YN L+ G+C +  
Sbjct: 112 MVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKK 171

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + + MV +G  P   TYN ++  L  + K+  A ++L ++  KG  P  ITYN 
Sbjct: 172 MDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNT 231

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G   +A  L  EM  KG++P ++TY+SLI  LS++ ++ EA + F +    G
Sbjct: 232 VIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFG 291

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +N+++ G C     +RA   L  M      P EV+Y  L+ G   +G  +EA 
Sbjct: 292 VKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEAL 351

Query: 241 RLLDQMKRRGI 251
            LL+++  RG+
Sbjct: 352 ELLNELCSRGV 362



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 97/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY + ++ +CK+G+++ A  +L Q+   G  P  +TYNT+IDG    G 
Sbjct: 182 MVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGK 241

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM  +G+ P   TY+ LI  L  E K+ EA     ++   G+ P++ TYN 
Sbjct: 242 TDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNS 301

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+     +A      MI KG +PT ++YT LI  ++ +    EA +L     ++G
Sbjct: 302 IMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361

Query: 181 ML 182
           ++
Sbjct: 362 VV 363



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 69/122 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PD  TY S ++G+ +EG++EEA +    ++  G+ P A TYN+++ G C    
Sbjct: 252 MRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQ 311

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F   M+ +G  PT  +Y +LI  +  E    EA ++L E+  +G+V  S    +
Sbjct: 312 TDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQV 371

Query: 121 LI 122
           ++
Sbjct: 372 VV 373


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 175/306 (57%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD++TYG+ ++G+CK  RL+EA  +L++M  +GL P  V Y TL+DG+  +G 
Sbjct: 304 MVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGK 363

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF    EM+  G+ P    Y+ LI  L    ++  A  +LKEM + G+ PD+ TYN 
Sbjct: 364 TAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNP 423

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+ +  +   AF L +EM + GI P + +Y  +I  L +     EA  L E  +++G
Sbjct: 424 LMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEG 483

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  M+  LI GH   GNI  A   L++M +  VHPD   YN+L+ G    G++EEA 
Sbjct: 484 LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAE 543

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               Q+++RG+ PD         TY+ LI G CK    + A++LLR+M++ G+ P+ +TY
Sbjct: 544 EYYAQVQKRGLVPDE-------FTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTY 596

Query: 301 FSLIEG 306
             L+EG
Sbjct: 597 TDLLEG 602



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD YTY +F+   CK    + A ++ E+M+        VTYN +I G C  G 
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F++EMV  G+ P A TY  L++ L    ++ EA  +L EM   G+ P+ + Y  
Sbjct: 294 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGT 353

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ + G   +AF +  EMI  G+QP  + Y +LI  L K  ++  A +L +  +  G
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVG 413

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +N L+ GH    + + AF LL EM    + P+  +Y  +++G C+ G+ +EA 
Sbjct: 414 LRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAG 473

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M   G+KP+   + P       LI G  K     LA E L +M    + PD   Y
Sbjct: 474 NLLEEMISEGLKPNAFMYAP-------LIIGHSKEGNISLACEALEKMTKANVHPDLFCY 526

Query: 301 FSLIEGIASVDKAAES 316
            SLI+G+++V +  E+
Sbjct: 527 NSLIKGLSTVGRMEEA 542



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 176/343 (51%), Gaps = 42/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P+ Y+YG  ++G+C+ G  +EA  +LE+M   GL P A  Y  LI G+  +GN
Sbjct: 444 MRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGN 503

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    ++M K  + P    YN LI  L    +M EA++   ++ ++G+VPD  TY+ 
Sbjct: 504 ISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSG 563

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           LI+GYC+ GN +KA  L  +M++ G++P   TYT L+    K N   +   + ++ L   
Sbjct: 564 LIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSG 623

Query: 180 ----------------------------------GMLPDIVMFNALIDGHCTNGNIERAF 205
                                             G++PD+ ++++LI G C   ++E+A 
Sbjct: 624 DKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAV 683

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            LL EM +  + P  V YN L+ G CR G +  AR + D +  +G+ P+ +       TY
Sbjct: 684 GLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCV-------TY 736

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            ALI G CKN +   A +L +EM+ +GI PD   Y  L  G +
Sbjct: 737 TALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCS 779



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 165/316 (52%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG+ PD +TY   + G CK G LE+A ++L QM  +GL P A TY  L++GY    +
Sbjct: 549 VQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSND 608

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E   S    M+  G  P    Y ++I  L     M  A  +L E+ + G+VPD   Y+ 
Sbjct: 609 YEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSS 668

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + +KA  L DEM  +G++P ++ Y +LI    +   +  A  +F++ LAKG
Sbjct: 669 LISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKG 728

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V + ALIDG+C NG+I  AF L KEM    + PD   YN L  G      +E+A 
Sbjct: 729 LVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQAL 788

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M  RG    ++S       +N L+ G CK  +    E+LL  M+ + I P+  T 
Sbjct: 789 FLTEEMFNRGYA--NVSL------FNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTV 840

Query: 301 FSLIEGIASVDKAAES 316
             ++       K  E+
Sbjct: 841 EKVVSEFGKAGKLGEA 856



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 173/317 (54%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GVQP+   Y + + G+CK G+L  AS++L++M + GL P   TYN L+ G+  + +
Sbjct: 374 MISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHD 433

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   +EM   GI+P   +Y ++I+ L    +  EA ++L+EM  +G+ P++  Y  
Sbjct: 434 KDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 493

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+ + GN   A    ++M    + P +  Y SLI  LS   RM EA++ +     +G
Sbjct: 494 LIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRG 553

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   ++ LI G+C  GN+E+A  LL++M    + P+  TY  L+ G  +    E+  
Sbjct: 554 LVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVS 613

Query: 241 RLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L  M   G KPD HI        Y  +I+ L +++  ++A  +L E+   G+ PD + 
Sbjct: 614 SILQSMLGSGDKPDNHI--------YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHI 665

Query: 300 YFSLIEG---IASVDKA 313
           Y SLI G   IA ++KA
Sbjct: 666 YSSLISGLCKIADMEKA 682



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 7/317 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +SR   P +      V    K G +  A++++  M + GL PT    N L+        +
Sbjct: 165 RSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAM 224

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           E+ +  +  M   GI+P   TY+  I      R    A  + +EM  +    + +TYN++
Sbjct: 225 ELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVM 284

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G CR G  ++AF   +EM+  G+ P   TY +L+  L K +R+ EA  L +     G+
Sbjct: 285 ISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGL 344

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P+IV++  L+DG    G    AF +LKEM    V P+++ Y+ L+ G C+ G++  A +
Sbjct: 345 KPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASK 404

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL +M + G++PD  ++NP       L+QG  +  + D A ELL EM + GI P+  +Y 
Sbjct: 405 LLKEMIKVGLRPDTFTYNP-------LMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYG 457

Query: 302 SLIEGIASVDKAAESSN 318
            +I G+    ++ E+ N
Sbjct: 458 IMINGLCQNGESKEAGN 474



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P        +  + +   +E   ++   M+  G++P   TY+T I+ +C   +
Sbjct: 199 MADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARD 258

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EM ++       TYN++I  L     + EA    +EM + G+ PD+ TY  
Sbjct: 259 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 318

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+    K+A +L DEM   G++P ++ Y +L+    K+ +  EA  + +  ++ G
Sbjct: 319 LMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG 378

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ +M++ LI G C  G + RA  LLKEM ++ + PD  TYN LM G  +Q   + A 
Sbjct: 379 VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAF 438

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M+  GI P+  S       Y  +I GLC+N E   A  LL EM+S+G+ P+   Y
Sbjct: 439 ELLNEMRNSGILPNVYS-------YGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 491

Query: 301 FSLIEG 306
             LI G
Sbjct: 492 APLIIG 497



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD++ Y    +G      LE+A  + E+M   G    ++ +NTL+ G+C +G 
Sbjct: 759 MLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSL-FNTLVHGFCKRGK 817

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+        M+ + I+P A T   ++ E     K+ EA  +  E+ +K
Sbjct: 818 LQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQK 866


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 179/318 (56%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+    T+   + G+CK+G LE A   L +M ++GL P  +TYNTLI  +C  GN
Sbjct: 371 MREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGN 430

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A++  DEMV++G+     T N +++ L  E++  EA  +L+   ++G +PD ++Y  
Sbjct: 431 IAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGT 490

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  Y +  N++ A  L DEMI K + P++ TY +LI  LS+  R+ EA       + KG
Sbjct: 491 VMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKG 550

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N +I  +C  G++E AF    +M      PD VT NTLM+G C  GK+++A 
Sbjct: 551 LVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKAL 610

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G K D I       TYN LIQ +CK+ + D A     +M ++G+ PD  TY
Sbjct: 611 KLFESWVEKGKKVDVI-------TYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTY 663

Query: 301 FSLIEGIASVDKAAESSN 318
             ++  ++   +  E+ N
Sbjct: 664 NVVLSALSEAGRTEEAQN 681



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 182/340 (53%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++ D++T  + +  +CKE R EEA  +L+   + G +P  V+Y T++  Y  + N
Sbjct: 441 MVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYN 500

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    DEM+++ + P+ STYN LI  L    ++ EA D L E+ EKG+VPD  TYNI
Sbjct: 501 SEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNI 560

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YC+ G+ + AF  H++M+    +P ++T  +L+  L    ++ +A +LFE+++ KG
Sbjct: 561 IIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKG 620

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D++ +N LI   C +G+++ A     +M+   + PD  TYN ++      G+ EEA+
Sbjct: 621 KKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQ 680

Query: 241 RLLDQMKRRG----------IKPDHIS---------------FNP---TRLTYNALIQGL 272
            +L ++   G          +KP  +                 NP       Y  L+ GL
Sbjct: 681 NMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGL 740

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           C + +   A+ +L EM+ KG++ D +TY +L+EG+    K
Sbjct: 741 CTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGLVKRQK 780



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 169/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD+ TY + ++  C++G L EA  +L +MK++G+ PT  TYNTL+  Y   G 
Sbjct: 230 MQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGW 289

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYN 119
           ++ A    + M   G  P   TYN+L   L    K+ EA  +  EM   G ++PD +TYN
Sbjct: 290 IKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYN 349

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L +   +C  +  A  L +EM  KG++ T++T+  +I  L K   +  A          
Sbjct: 350 TLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADD 409

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD++ +N LI  HC  GNI +A++L+ EM R  +  D  T NT+++  C++ + EEA
Sbjct: 410 GLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEA 469

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + LL    +RG  PD +S       Y  ++    K    + A  L  EM+ K +TP  +T
Sbjct: 470 QGLLQSPPQRGFMPDEVS-------YGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSIST 522

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI+G++ + +  E+
Sbjct: 523 YNTLIKGLSRMGRLKEA 539



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 10/210 (4%)

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSL-HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           G +P +   +  ++ Y R      A  L H       ++P++    +++  L++      
Sbjct: 126 GNLPSTPLADAALSAYSRLRLPHLAAQLLHSLRRRVRVRPSLQAANAVLSALARSPSTSP 185

Query: 169 ADQL--FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
              L  F + +A  + P+   FN L+  HC+ G +  A S L  M    + PD VTYNTL
Sbjct: 186 QASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTL 245

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           ++  CR+G + EAR LL +MK+ G+        PTR TYN L+    +      A +++ 
Sbjct: 246 LNAHCRKGMLGEARALLARMKKDGVA-------PTRPTYNTLVSAYARLGWIKQATKVVE 298

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            M + G  PD  TY  L  G+    K  E+
Sbjct: 299 AMTANGFEPDLWTYNVLAAGLCQAGKVDEA 328



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 36/205 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M     +PD  T  + ++G+C  G+L++A ++ E   E G     +TYNTLI   C  G+
Sbjct: 581 MVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGD 640

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-------- 112
           ++ A  F  +M  +G+ P A TYN+++  L    +  EA +ML ++ E G +        
Sbjct: 641 VDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPL 700

Query: 113 --PDSI-------------------------TYNILINGYCRCGNAKKAFSLHDEMIHKG 145
             P S+                          Y  L+NG C  G  K+A ++ DEM+ KG
Sbjct: 701 LKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKG 760

Query: 146 IQPTMLTYTSLI-FVLSKQNRMIEA 169
           +     TY +L+  ++ +Q R+  A
Sbjct: 761 MSVDSSTYITLMEGLVKRQKRLTHA 785


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 177/315 (56%), Gaps = 7/315 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+  +YT    ++G+CK+G++ +A  +L+ +  +GL+ T V YNTLI+GYC  G+LE 
Sbjct: 322 KGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEG 381

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AFS   +M  + I P   TYN LI+ L    ++ EA D++ EM + G+ P   T+N LI+
Sbjct: 382 AFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLID 441

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            Y R G  +K F +  +M  KG++P +++Y S++    K  +++EA  + ++   K +LP
Sbjct: 442 AYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLP 501

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
              ++NA+ID +   G+ ++AF L ++M    V P  VTYN L+ G C+Q ++ EA  LL
Sbjct: 502 GAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELL 561

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D ++  G+ PD IS       YN LI   C     D A EL +EM   GI P   TY  L
Sbjct: 562 DSLRNYGLAPDVIS-------YNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRML 614

Query: 304 IEGIASVDKAAESSN 318
              +    +  E  N
Sbjct: 615 FSSLGGAGRVHEMEN 629



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 178/309 (57%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++++Y   ++G+ K G   +A ++ ++M E  +VP  +TYNT+IDG+  KG+LE  F  
Sbjct: 186 PNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRL 245

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M++ G+ P   TYN+L+  L    +M E   +L EM  + +VPD  TY+IL +G+ R
Sbjct: 246 WSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSR 305

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+++   SL +E + KG++    T + L+  L K  ++ +A+++ +  +  G+L   V+
Sbjct: 306 TGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVI 365

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C  G++E AFS+ ++M    + PD +TYN L++G  +  ++ EA  L+ +M+
Sbjct: 366 YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEME 425

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G+       NP+  T+N LI    +  + +    +L +M  KG+ P+  +Y S++   
Sbjct: 426 KNGV-------NPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAF 478

Query: 308 ASVDKAAES 316
               K  E+
Sbjct: 479 CKNGKILEA 487



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 185/346 (53%), Gaps = 31/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+  TY   +SG+C+ GR+ E + +L++M    +VP   TY+ L DG+   G+
Sbjct: 249 MLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGD 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   S  +E VK+G+   A T ++L++ L  + K+ +A+++L+ +   G++  ++ YN 
Sbjct: 309 SQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNT 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G+ + AFS+  +M  + I+P  +TY +LI  L K  R+ EA  L       G
Sbjct: 369 LINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNG 428

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  FN LID +   G +E+ F +L +M    + P+ V+Y ++++  C+ GK+ EA 
Sbjct: 429 VNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAV 488

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LD M  + + P    +N                            P+ +TYN LI+GL
Sbjct: 489 AILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGL 548

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
           CK  +   AEELL  + + G+ PD  +Y +LI      ++ D+A E
Sbjct: 549 CKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALE 594



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+ K  R+ EA  ++ +M++NG+ P+  T+NTLID Y   G 
Sbjct: 389 MKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQ 448

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F    +M ++G+ P   +Y  +++      K++EA  +L +M  K ++P +  YN 
Sbjct: 449 LEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNA 508

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y  CG+  +AF L ++M   G+ P+++TY  LI  L KQ+++ EA++L ++    G
Sbjct: 509 IIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYG 568

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N LI   C   N +RA  L KEM +  + P   TY  L       G+V E  
Sbjct: 569 LAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEME 628

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L  QM  + +        P    YN ++    K  E    E L +EM  KGI   D T
Sbjct: 629 NLYQQMLDKDVV-------PCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGIAVGDYT 680



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           + ++  AF LL      +  PD  T+N  +      G ++EA  +L +M   G       
Sbjct: 133 HADVRGAFELLVAA---RARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPA---- 185

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             P   +YN +I GL K      A +L  EM  K + P+  TY ++I+G
Sbjct: 186 --PNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDG 232


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 177/309 (57%), Gaps = 11/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN--- 57
           M  R +QP+ +T+   ++ +CK G++ +A  ++E MK  G  P  V+YNTLIDGYC    
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGG 273

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
            G +  A +   EMV+  + P  +T+N+LI     +  +  +  + KEM ++ + P+ I+
Sbjct: 274 NGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVIS 333

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LING C  G   +A S+ D+M+  G+QP ++TY +LI    K + + EA  +F +  
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G +P   M+N LID +C  G I+  F+L +EM+R  + PD  TYN L+ G CR G +E
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE 453

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A++L DQ+  +G+        P  +T++ L++G C+  E   A  LL+EM   G+ P  
Sbjct: 454 AAKKLFDQLTSKGL--------PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRH 505

Query: 298 NTYFSLIEG 306
            TY  +++G
Sbjct: 506 LTYNIVMKG 514



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 165/296 (55%), Gaps = 9/296 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+  T+   + G  K+  L  + ++ ++M +  + P  ++YN+LI+G CN G +  A 
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAI 351

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S RD+MV  G+ P   TYN LI+       + EA DM   +  +G VP +  YN+LI+ Y
Sbjct: 352 SMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G     F+L +EM  +GI P + TY  LI  L +   +  A +LF+   +KG LPD+
Sbjct: 412 CKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDL 470

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V F+ L++G+C  G   +A  LLKEM +M + P  +TYN +M G C++G ++ A  +  Q
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530

Query: 246 M-KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           M K R ++ +  S       YN L+QG  +  + + A  LL EM+ KG+ P+  TY
Sbjct: 531 MEKERRLRMNVAS-------YNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 148/326 (45%), Gaps = 32/326 (9%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73
           SF+ G  + G   +   +   +   + +   ++  + L+  Y N    E+ F        
Sbjct: 122 SFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGY 181

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
            G   +A +   L+  LL E +  + + + KEM  + I P+  T+N++IN  C+ G   K
Sbjct: 182 YGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNK 241

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
           A  + ++M   G  P +++Y +LI     L    +M +AD + +  +   + P++  FN 
Sbjct: 242 ARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNI 301

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LIDG   + N+  +  + KEM    V P+ ++YN+L++G C  GK+ EA  + D+M   G
Sbjct: 302 LIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAG 361

Query: 251 IKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAE 282
           ++P+ I++N                            PT   YN LI   CK  + D   
Sbjct: 362 VQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGF 421

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIA 308
            L  EM  +GI PD  TY  LI G+ 
Sbjct: 422 ALKEEMEREGIVPDVGTYNCLIAGLC 447



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 31/237 (13%)

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           +  +SI  ++L+  Y      +  F       + G + + L+   L+  L K+NR  + +
Sbjct: 149 VCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVE 208

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            +++  + + + P++  FN +I+  C  G + +A  ++++M      P+ V+YNTL+ G 
Sbjct: 209 YVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGY 268

Query: 231 CR---QGKVEEARRLLDQMKRRGIKPDHISFN---------------------------- 259
           C+    GK+ +A  +L +M    + P+  +FN                            
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVK 328

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           P  ++YN+LI GLC   +   A  +  +MVS G+ P+  TY +LI G    D   E+
Sbjct: 329 PNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEA 385



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 78/122 (63%), Gaps = 2/122 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G+ PD  T+   + G C++G   +A+ +L++M + GL P  +TYN ++ GYC +GN
Sbjct: 462 LTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGN 520

Query: 61  LEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A + R +M K+  +    ++YN+L+     + K+ +A+ +L EM EKG+VP+ ITY 
Sbjct: 521 LKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYE 580

Query: 120 IL 121
           I+
Sbjct: 581 IV 582



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 17/115 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
           M   G++P   TY   + G CKEG L+ A+ M  QM KE  L     +YN L+ GY  KG
Sbjct: 496 MSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
            LE A    +EM+++G++P   TY     E++ E           EM ++G VPD
Sbjct: 556 KLEDANMLLNEMLEKGLVPNRITY-----EIVKE-----------EMVDQGFVPD 594


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 120/331 (36%), Positives = 180/331 (54%), Gaps = 31/331 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEE---ASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           MK RGV  +  TY + + G CK G++ +   A  +L++M+ +G+ P  VT+N LIDG+C 
Sbjct: 189 MKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCK 248

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
             N+  A     EM +QG+ P   TYN LI+ L    K+ EA  +  +M    + P+ IT
Sbjct: 249 DKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIIT 308

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N L+NG+C+    K+A  L D+M  +GI P + TY  LI    K   M +A  L+   L
Sbjct: 309 HNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIML 368

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N LI G C  G++E A +L+ EMD   +  D +TYN L+   C +G+++
Sbjct: 369 GKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMK 428

Query: 238 EARRLLDQMKRRGIKPDHISFNPT------------------------RL----TYNALI 269
           +A RLLD+M R+G+KP  +++N                          RL    TYN LI
Sbjct: 429 KALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLI 488

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +G CK  + + A  LL EM+ KG+ P+  TY
Sbjct: 489 KGFCKKDKLEDANGLLNEMLEKGLIPNRMTY 519



 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 174/309 (56%), Gaps = 10/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R ++P   ++   ++G+CK G+L +A  ++E MK  G+    +TYNTLIDGYC  G 
Sbjct: 154 MIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGK 213

Query: 61  LEMAF---SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +   +   +   EM   GI P   T+N+LI     ++ +  A  +  EM  +G+ P+ +T
Sbjct: 214 IGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVT 273

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LING C  G   +A +L D+M++  ++P ++T+ +L+    K   + +A +LF++  
Sbjct: 274 YNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMP 333

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ P++  +N LID +C + N+E AF+L + M    V PD  TYN L+ G CR+G +E
Sbjct: 334 KQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLE 393

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            AR L+ +M  + +K D I       TYN LI  LC   E   A  LL EM  KG+ P  
Sbjct: 394 AARNLVSEMDTKHLKADLI-------TYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQ 446

Query: 298 NTYFSLIEG 306
            TY ++I+G
Sbjct: 447 LTYNTMIDG 455



 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/296 (33%), Positives = 163/296 (55%), Gaps = 23/296 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P+  TY S ++G+C  G++ EA+ + +QM  + L P  +T+N L++G+C    
Sbjct: 262 MNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKM 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D+M KQGI P  +TYN+LI     +  M +A  + + M  KG+ PD  TYN 
Sbjct: 322 VKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNC 381

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G CR G+ + A +L  EM  K ++  ++TY  LI  L  +  M +A +L +    KG
Sbjct: 382 LIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG 441

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + +N +IDG+C  GN+  A +L  +M+++    +  TYN L+ G C++ K+E+A 
Sbjct: 442 LKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDAN 501

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            LL++M  +G+ P+       R+TY                E +  EM+ KG  PD
Sbjct: 502 GLLNEMLEKGLIPN-------RMTY----------------EIVTEEMMEKGFVPD 534



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 150/283 (53%), Gaps = 10/283 (3%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           +E +++L  +  +     ++  + L+  Y       + F         G+  + ++ N L
Sbjct: 75  QEQTQILLSVSGDSFCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPL 134

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           +  L+   ++ + + + KEM  + I P  I++NI+ING C+ G   KA  + ++M  +G+
Sbjct: 135 MSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGV 194

Query: 147 QPTMLTYTSLI---FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
              ++TY +LI     + K  +M +AD + +   A G+ P+ V FN LIDG C + N+  
Sbjct: 195 SANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSA 254

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  +  EM+R  V P+ VTYN+L++G C  GKV EA  L DQM    +KP+ I       
Sbjct: 255 AMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNII------- 307

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           T+NAL+ G CKN+    A EL  +M  +GITP+  TY  LI+ 
Sbjct: 308 THNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDA 350



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 164/312 (52%), Gaps = 17/312 (5%)

Query: 6   VQPDSYTYGS-----FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           V  DS+   S      V    K  R        ++  + GL  +  + N L+ G    G 
Sbjct: 84  VSGDSFCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGE 143

Query: 61  L-EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           + +M F ++ EM+++ I PT  ++N++I+ L    K+ +A D++++M  +G+  + ITYN
Sbjct: 144 IGDMEFVYK-EMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYN 202

Query: 120 ILINGYCRCGNAKKAF---SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            LI+GYC+ G   K +   ++  EM   GI P  +T+  LI    K   +  A ++F   
Sbjct: 203 TLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEM 262

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +G+ P++V +N+LI+G C NG +  A +L  +M    + P+ +T+N L++G C+   V
Sbjct: 263 NRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMV 322

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           ++A  L D M ++GI P+         TYN LI   CK++  + A  L R M+ KG+ PD
Sbjct: 323 KQAGELFDDMPKQGITPNVT-------TYNILIDAYCKDENMEDAFALYRIMLGKGVCPD 375

Query: 297 DNTYFSLIEGIA 308
            +TY  LI G+ 
Sbjct: 376 VSTYNCLIAGLC 387



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           E   +L  +       +SI  +IL+  Y +    +  F         G++ ++ +   L+
Sbjct: 76  EQTQILLSVSGDSFCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLM 135

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K   + + + +++  + + + P ++ FN +I+G C  G + +A  ++++M    V 
Sbjct: 136 SGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVS 195

Query: 218 PDEVTYNTLMHGRCRQGKVE---EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + +TYNTL+ G C+ GK+    +A  +L +M+  GI P+ ++F       N LI G CK
Sbjct: 196 ANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTF-------NILIDGFCK 248

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           ++    A ++  EM  +G+ P+  TY SLI G+ +  K  E++
Sbjct: 249 DKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEAT 291


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 178/330 (53%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD   +   +  +CKE ++ EA  +  ++ + GL PT V++NTLI+GYC  GNL+  
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M++  + P   TY++LI+ L  E ++ +A+ +  EM ++G+VP+ +T+  LING
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G A     ++ +M+ KG++P ++TY +LI  L K   + EA +L      +G+ PD
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G++E A  + KEM +  +  D V +  L+ G CR+G+V EA R L 
Sbjct: 400 KFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLR 459

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M   GIKPD  ++                             P  +TYN L+ GLCK  
Sbjct: 460 EMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQG 519

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   A  LL  M++ G+ PDD TY  L+EG
Sbjct: 520 QMKNANMLLDAMLNLGVVPDDITYNILLEG 549



 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 176/299 (58%), Gaps = 10/299 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD +TY   ++G+CKEG+L++A+++  +M + GLVP  VT+ TLI+G+C  G  ++  
Sbjct: 291 VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGM 350

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +M+++G+ P   TYN LI+ L     + EA  ++ EM ++G+ PD  TY +LI+G 
Sbjct: 351 EIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGC 410

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G+ + A  +  EM+ +GI+   + +T+LI    ++ ++IEA++     L  G+ PD 
Sbjct: 411 CKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD 470

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +  +I G C  G+++  F LLKEM      P  VTYN L++G C+QG+++ A  LLD 
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDA 530

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           M   G+ PD I       TYN L++G CK+   +  ++L  E   KG+  D  +Y SLI
Sbjct: 531 MLNLGVVPDDI-------TYNILLEGHCKHGNREDFDKLQSE---KGLVQDYGSYTSLI 579



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 174/321 (54%), Gaps = 11/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++RG    +  +   ++     G   +A +    ++++ L     +   L D       
Sbjct: 146 LEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNL 205

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++F +E++  G  P    +N+L+H L  E K+ EA  +  E+G++G+ P  +++N 
Sbjct: 206 TSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNT 265

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ GN  + F L   M+   + P + TY+ LI  L K+ ++ +A++LF     +G
Sbjct: 266 LINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRG 325

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V F  LI+GHC  G  +    + ++M R  V PD +TYNTL++G C+ G + EA+
Sbjct: 326 LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAK 385

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
           +L+ +M +RG+KPD       + TY  LI G CK  EGDL  A E+ +EMV +GI  D+ 
Sbjct: 386 KLVIEMTQRGLKPD-------KFTYTMLIDGCCK--EGDLESALEIRKEMVKEGIELDNV 436

Query: 299 TYFSLIEGIASVDKAAESSNS 319
            + +LI G     +  E+  +
Sbjct: 437 AFTALISGFCREGQVIEAERT 457


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   TY SF+ G+CK GR+ +A + L  M  N L+P  V+YNTLI GYC  GN
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF   DE+    + PT  TYN L+  L  + ++  A  +  EM  +GI PD +TY I
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G+   A    DEM+H+G++     Y + I    K      A  L E  LAKG
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 509

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++++N ++DG C  GN+E A  LL++M    V PD VTY +++H     G++ + R
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGR 569

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +  +M  +G+ P  +++                             P  +TYN+LI GL
Sbjct: 570 EIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           CK +  D A     EMV KGI P+  +Y  LI
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILI 661



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 177/343 (51%), Gaps = 42/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P+  TY   ++G+ K+G  E+A  ++ +M + GL  +A TYN LI GY NKG 
Sbjct: 260 MQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGM 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S ++EMV +G  PT +TYN  I+ L    +M +A   L +M    ++PD ++YN 
Sbjct: 320 LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNT 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR GN  KAF L DE+    + PT++TY +L+  L +Q  +  A QL    + +G
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 439

Query: 181 MLPDIVMFNALIDGHCTNGNI-----------------------------------ERAF 205
           + PDIV +  L++G C  G++                                    RAF
Sbjct: 440 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF 499

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           SL +EM      PD + YN ++ G C+ G +EEA  LL +M   G+ PD++       TY
Sbjct: 500 SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYV-------TY 552

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            ++I    +N       E+  EM+SKG+TP   TY  LI G A
Sbjct: 553 TSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHA 595



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR + PD       +  +  +  + +A  +   M E G+ PT VTYNTL+D YC  G 
Sbjct: 191 IKSR-LSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G  P   TYN+LI+ L  + +  +A  ++ EM + G+   + TYN 
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY   G   +A SL +EM+ KG  PT+ TY S I+ L K  RM +A Q   + LA  
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 369

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V +N LI G+C  GN+ +AF L  E+  + + P  VTYNTL+ G CRQG++E A+
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 429

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   GI PD +       TY  L+ G CK     +A+E   EM+ +G+  D   Y
Sbjct: 430 QLKVEMINEGIAPDIV-------TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAY 482

Query: 301 FSLIEG 306
            + I G
Sbjct: 483 ATRIVG 488



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 177/343 (51%), Gaps = 42/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + PD  +Y + + G C+ G L +A  + ++++   L PT VTYNTL+DG C +G 
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIH----------------ELLME----------R 94
           LE+A   + EM+ +GI P   TY +L++                E+L E           
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484

Query: 95  KMV---------EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           ++V          A  + +EM  KG  PD I YN++++G C+ GN ++A  L  +M+  G
Sbjct: 485 RIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +TYTS+I    +  R+ +  ++F   L+KG+ P +V +  LI GH   G +ERAF
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAF 604

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
               EM    + P+ +TYN+L++G C+  ++++A     +M  +GI P+       + +Y
Sbjct: 605 IYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPN-------KYSY 657

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             LI   C       A  L ++M+ +G+ PD  T+ +L++ + 
Sbjct: 658 TILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLG 700



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 152/288 (52%), Gaps = 10/288 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ PD  TY   V+G CK G L  A    ++M   GL   +  Y T I G    G+
Sbjct: 435 MINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGD 494

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AFS ++EM+ +G  P    YN+++  L     + EA ++L++M   G++PD +TY  
Sbjct: 495 TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +   G  +K   +  EM+ KG+ P+++TYT LI   + + R+  A   F     KG
Sbjct: 555 IIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKG 614

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+++ +N+LI+G C    +++A++   EM    + P++ +Y  L++  C  G  +EA 
Sbjct: 615 ILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEAL 674

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGL---CKNQEGDLAEELL 285
            L  QM  RG++PD         T++AL++ L   CK Q     E LL
Sbjct: 675 SLYKQMLDRGVQPDSC-------THSALLKQLGKDCKLQAVRQLESLL 715



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 28/286 (9%)

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           + LI  Y  K  +E   S  D+M+K  + P     N ++  L  +  M +A ++ + MGE
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
            GI P  +TYN L++ YC+ G  ++   L  EM  +G  P  +TY  LI  LSK+    +
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQ 287

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  L    L  G+      +N LI G+   G +  A SL +EM      P   TYN+ ++
Sbjct: 288 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIY 347

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------P 260
           G C+ G++ +A + L  M    + PD +S+N                            P
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 407

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           T +TYN L+ GLC+  E ++A++L  EM+++GI PD  TY  L+ G
Sbjct: 408 TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNG 453



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-DMLKEMGEKGIVPDSITYNIL---IN 123
           R E V   I+   +  NL+     +  +++ A+   + ++   G V   ++  IL   I 
Sbjct: 113 RSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIW 172

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            Y +    ++  S+ D+MI   + P +     ++ +L  ++ M +A +++      G+ P
Sbjct: 173 VYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKP 232

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            IV +N L+D +C  G +++   LL EM R    P++VTYN L++G  ++G+ E+A+ L+
Sbjct: 233 TIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLI 292

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M + G+K    ++NP  L Y    +G+        A  L  EMV KG +P   TY S 
Sbjct: 293 GEMLKTGLKVSAYTYNP--LIYGYFNKGMLAE-----ALSLQEEMVLKGASPTVATYNSF 345

Query: 304 IEGIASVDKAAES 316
           I G+  + + +++
Sbjct: 346 IYGLCKLGRMSDA 358


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 183/316 (57%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G +PD  TY   ++G+CKEGRL+EA + L  M   G  P  +T+N ++   C+ G 
Sbjct: 277 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++G  P+  T+N+LI+ L  +  +  A D+L++M   G  P+S++YN 
Sbjct: 337 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A    D M+ +G  P ++TY +L+  L K  ++  A ++     +KG
Sbjct: 397 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  ERA  LL EM R  + PD +TY++L+ G  R+GKV+EA 
Sbjct: 457 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAI 516

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +    ++  GI+P+ I       TYN+++ GLCK+++ D A + L  M+SK   P + TY
Sbjct: 517 KFFHDLEGLGIRPNAI-------TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATY 569

Query: 301 FSLIEGIASVDKAAES 316
             LIEGIA    A E+
Sbjct: 570 TILIEGIAYEGLAKEA 585



 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G  PD  TY   +SG CK G ++ A ++L++M    + P  VTYNT++   C+ G 
Sbjct: 175 LEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGK 231

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D  +++   P   TY +LI     E  + +A  +L EM  KG  PD +TYN+
Sbjct: 232 LKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNV 291

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G   +A    + M   G QP ++T+  ++  +    R ++A++L  + L KG
Sbjct: 292 LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 351

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V FN LI+  C  G + RA  +L++M      P+ ++YN L+HG C++ K++ A 
Sbjct: 352 CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 411

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             LD M  RG  PD +       TYN L+  LCK+ + D+A E+L ++ SKG +P   TY
Sbjct: 412 EYLDIMVSRGCYPDIV-------TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY 464

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G++ V K   +
Sbjct: 465 NTVIDGLSKVGKTERA 480



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 155/330 (46%), Gaps = 34/330 (10%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + + G LE+  + LE M   G +P  +   +LI G+C  G  + A    + + + G +P 
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TYN+LI       K  E D+ L+ +    + PD +TYN ++   C  G  K+A  + D
Sbjct: 184 VITYNVLISGYC---KSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
             + K   P ++TYT LI    K++ + +A +L +    KG  PD+V +N LI+G C  G
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 300

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A   L  M      P+ +T+N ++   C  G+  +A +LL  M R+G  P  ++FN
Sbjct: 301 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 360

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P  L+YN L+ G CK ++ D A E L  MVS+
Sbjct: 361 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 420

Query: 292 GITPDDNTYFSLIEGI---ASVDKAAESSN 318
           G  PD  TY +L+  +     VD A E  N
Sbjct: 421 GCYPDIVTYNTLLTALCKDGKVDVAVEILN 450



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 142/251 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+   ++ +C++G L  A  +LE+M  +G  P +++YN L+ G+C +  
Sbjct: 347 MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKK 406

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + D MV +G  P   TYN L+  L  + K+  A ++L ++  KG  P  ITYN 
Sbjct: 407 MDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 466

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L DEM  KG++P ++TY+SL+  LS++ ++ EA + F +    G
Sbjct: 467 VIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG 526

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +N+++ G C +   +RA   L  M   +  P E TY  L+ G   +G  +EA 
Sbjct: 527 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 586

Query: 241 RLLDQMKRRGI 251
            LL+++  RG+
Sbjct: 587 DLLNELCSRGL 597



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 97/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY + ++ +CK+G+++ A  +L Q+   G  P  +TYNT+IDG    G 
Sbjct: 417 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    DEM ++G+ P   TY+ L+  L  E K+ EA     ++   GI P++ITYN 
Sbjct: 477 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+     +A      MI K  +PT  TYT LI  ++ +    EA  L     ++G
Sbjct: 537 IMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 596

Query: 181 ML 182
           ++
Sbjct: 597 LV 598



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 67/115 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PD  TY S VSG+ +EG+++EA +    ++  G+ P A+TYN+++ G C    
Sbjct: 487 MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 546

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            + A  F   M+ +   PT +TY +LI  +  E    EA D+L E+  +G+V  S
Sbjct: 547 TDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKS 601


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 183/316 (57%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G +PD  TY   ++G+CKEGRL+EA + L  M   G  P  +T+N ++   C+ G 
Sbjct: 220 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++G  P+  T+N+LI+ L  +  +  A D+L++M   G  P+S++YN 
Sbjct: 280 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 339

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A    D M+ +G  P ++TY +L+  L K  ++  A ++     +KG
Sbjct: 340 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 399

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  ERA  LL EM R  + PD +TY++L+ G  R+GKV+EA 
Sbjct: 400 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAI 459

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +    ++  GI+P+ I       TYN+++ GLCK+++ D A + L  M+SK   P + TY
Sbjct: 460 KFFHDLEGLGIRPNAI-------TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATY 512

Query: 301 FSLIEGIASVDKAAES 316
             LIEGIA    A E+
Sbjct: 513 TILIEGIAYEGLAKEA 528



 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G  PD  TY   +SG CK G ++ A ++L++M    + P  VTYNT++   C+ G 
Sbjct: 118 LEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGK 174

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D  +++   P   TY +LI     E  + +A  +L EM  KG  PD +TYN+
Sbjct: 175 LKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNV 234

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G   +A    + M   G QP ++T+  ++  +    R ++A++L  + L KG
Sbjct: 235 LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 294

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V FN LI+  C  G + RA  +L++M      P+ ++YN L+HG C++ K++ A 
Sbjct: 295 CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI 354

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             LD M  RG  PD +       TYN L+  LCK+ + D+A E+L ++ SKG +P   TY
Sbjct: 355 EYLDIMVSRGCYPDIV-------TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY 407

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G++ V K   +
Sbjct: 408 NTVIDGLSKVGKTERA 423



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 155/330 (46%), Gaps = 34/330 (10%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + + G LE+  + LE M   G +P  +   +LI G+C  G  + A    + + + G +P 
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TYN+LI       K  E D+ L+ +    + PD +TYN ++   C  G  K+A  + D
Sbjct: 127 VITYNVLISGYC---KSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
             + K   P ++TYT LI    K++ + +A +L +    KG  PD+V +N LI+G C  G
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 243

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A   L  M      P+ +T+N ++   C  G+  +A +LL  M R+G  P  ++FN
Sbjct: 244 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 303

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P  L+YN L+ G CK ++ D A E L  MVS+
Sbjct: 304 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 363

Query: 292 GITPDDNTYFSLIEGIA---SVDKAAESSN 318
           G  PD  TY +L+  +     VD A E  N
Sbjct: 364 GCYPDIVTYNTLLTALCKDGKVDVAVEILN 393



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 142/251 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+   ++ +C++G L  A  +LE+M  +G  P +++YN L+ G+C +  
Sbjct: 290 MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKK 349

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + D MV +G  P   TYN L+  L  + K+  A ++L ++  KG  P  ITYN 
Sbjct: 350 MDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 409

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L DEM  KG++P ++TY+SL+  LS++ ++ EA + F +    G
Sbjct: 410 VIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG 469

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +N+++ G C +   +RA   L  M   +  P E TY  L+ G   +G  +EA 
Sbjct: 470 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 529

Query: 241 RLLDQMKRRGI 251
            LL+++  RG+
Sbjct: 530 DLLNELCSRGL 540



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 97/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY + ++ +CK+G+++ A  +L Q+   G  P  +TYNT+IDG    G 
Sbjct: 360 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 419

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    DEM ++G+ P   TY+ L+  L  E K+ EA     ++   GI P++ITYN 
Sbjct: 420 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 479

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+     +A      MI K  +PT  TYT LI  ++ +    EA  L     ++G
Sbjct: 480 IMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 539

Query: 181 ML 182
           ++
Sbjct: 540 LV 541



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 67/115 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PD  TY S VSG+ +EG+++EA +    ++  G+ P A+TYN+++ G C    
Sbjct: 430 MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 489

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            + A  F   M+ +   PT +TY +LI  +  E    EA D+L E+  +G+V  S
Sbjct: 490 TDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKS 544


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++PD +TY S +S +C  GR  +ASR+L  M E  + P  VT+N+LID +  +G 
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+++ I P   TYN LI+   M  ++ EA  +   M  K  +PD +TYN 
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 385

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+         L  +M  +G+    +TYT+LI    + +    A  +F+  ++ G
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N L+DG C NG +E+A  + + + + K+ PD  TYN +  G C+ GKVE+  
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGW 505

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD I+       YN +I G CK    + A  L  +M   G  PD  TY
Sbjct: 506 DLFCSLSLKGVKPDVIA-------YNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 559 NTLIRAHLRDGDKAASA 575



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD+ T+ + V G+ +  +  EA  ++E+M   G  P  VTY  +I+G C +G 
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A +  ++M K  I      Y+ +I  L   R + +A ++  EM  KGI PD  TY+ 
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L  +M+ + I P ++T+ SLI   +K+ ++IEA++LF+  + + 
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +N+LI+G C +  ++ A  +   M      PD VTYNTL++G C+  KV +  
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGM 400

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M RRG+  + +       TY  LI G  +  + D A+ + ++MVS G+ P+  TY
Sbjct: 401 ELFRDMSRRGLVGNTV-------TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453

Query: 301 FSLIEGIA 308
            +L++G+ 
Sbjct: 454 NTLLDGLC 461



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 170/315 (53%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV  + YTY   ++ +C+  +L  A  +L +M + G  P+ VT N+L++G+C+   
Sbjct: 91  MEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNR 150

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+  L+H L    K  EA  +++ M  KG  PD +TY  
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 210

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G    A +L ++M    I+  ++ Y+++I  L K   + +A  LF     KG
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +++LI   C  G    A  LL +M   K++P+ VT+N+L+    ++GK+ EA 
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M +R I P+ +       TYN+LI G C +   D A+++   MVSK   PD  TY
Sbjct: 331 KLFDEMIQRSIDPNIV-------TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383

Query: 301 FSLIEGIASVDKAAE 315
            +LI G     K  +
Sbjct: 384 NTLINGFCKAKKVVD 398



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 167/315 (53%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QPD  TYG+ ++G+CK G  + A  +L +M++  +    V Y+T+ID  C   +
Sbjct: 196 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRH 255

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M E+ I P+ +T+N 
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNS 315

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L DEMI + I P ++TY SLI      +R+ EA Q+F   ++K 
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+V +N LI+G C    +     L ++M R  +  + VTY TL+HG  +    + A+
Sbjct: 376 CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQ 435

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  QM   G+       +P  +TYN L+ GLCKN + + A  +   +    + PD  TY
Sbjct: 436 MVFKQMVSDGV-------HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTY 488

Query: 301 FSLIEGIASVDKAAE 315
             + EG+    K  +
Sbjct: 489 NIMSEGMCKAGKVED 503



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 172/356 (48%), Gaps = 45/356 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEG-------------RLEEASRMLEQMKENGLVPTAVTYNT 50
           R   P     G + SG+  +G             +L+EA  +  +M ++   P+ V ++ 
Sbjct: 11  RKASPSFCLRGIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSK 70

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           L+         ++  SF ++M   G+     TYN++I+ L    ++  A  +L +M + G
Sbjct: 71  LLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLG 130

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
             P  +T N L+NG+C      +A +L D+M+  G QP  +T+T+L+  L + N+  EA 
Sbjct: 131 YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV 190

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            L E  + KG  PD+V + A+I+G C  G  + A +LL +M++ K+  D V Y+T++   
Sbjct: 191 ALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSL 250

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISF----------------------------NPTR 262
           C+   V++A  L  +M  +GI+PD  ++                            NP  
Sbjct: 251 CKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNV 310

Query: 263 LTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +T+N+LI    K  EG L  AE+L  EM+ + I P+  TY SLI G    D+  E+
Sbjct: 311 VTFNSLIDAFAK--EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 364



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 124/247 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P+  TY S ++G C   RL+EA ++   M     +P  VTYNTLI+G+C    
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +        +M ++G++    TY  LIH          A  + K+M   G+ P+ +TYN 
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  +KA  + + +    ++P + TY  +   + K  ++ +   LF +   KG
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N +I G C  G  E A++L  +M      PD  TYNTL+    R G    + 
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 575

Query: 241 RLLDQMK 247
            L+ +M+
Sbjct: 576 ELIKEMR 582



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 4/241 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+   PD  TY + ++G CK  ++ +   +   M   GLV   VTY TLI G+    +
Sbjct: 371 MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASD 430

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +MV  G+ P   TYN L+  L    K+ +A  + + + +  + PD  TYNI
Sbjct: 431 CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNI 490

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +  G C+ G  +  + L   +  KG++P ++ Y ++I    K+    EA  LF      G
Sbjct: 491 MSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDG 550

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY----NTLMHGRCRQGKV 236
            LPD   +N LI  H  +G+   +  L+KEM   +   D  TY    + L  GR  +G +
Sbjct: 551 PLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFL 610

Query: 237 E 237
           E
Sbjct: 611 E 611



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 7/228 (3%)

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
           L+  K+ EA D+  EM +    P  + ++ L++   +        S  ++M   G+   +
Sbjct: 41  LLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNL 100

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            TY  +I  L +++++  A  +    +  G  P IV  N+L++G C    I  A +L+ +
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M  M   PD VT+ TL+HG  +  K  EA  L+++M  +G +PD +       TY A+I 
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV-------TYGAVIN 213

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           GLCK  E DLA  LL +M    I  D   Y ++I+ +       ++ N
Sbjct: 214 GLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/291 (37%), Positives = 170/291 (58%), Gaps = 7/291 (2%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + K GR E   R+ E+M  NGL P+ +T+ TLIDG C +G+L  A    DEM  +GI+PT
Sbjct: 157 LVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPT 216

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
              Y +LI  L  + K+ EA+ M + M E G+ P+  TYN L++GYC+  NAK+A  L+ 
Sbjct: 217 VIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQ 276

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           +M+ +G+ P ++T+  LI  L K   M  A  LF N +   + P+I ++N+LID +C  G
Sbjct: 277 DMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVG 336

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
           ++  A +L  E++R +V PD  TY+ L+ G C   + EEA  + ++M + GI  + +   
Sbjct: 337 DVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSV--- 393

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
               TYN+LI G CK  + D A E+  +M   G+ P+  T+ +LI+G   +
Sbjct: 394 ----TYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKI 440



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P    Y   + G+C + ++EEA  M   M+E G+ P   TYNTL+DGYC   N
Sbjct: 208 MRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLAN 267

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +M+ +G++P   T+ +LI  L    +M  A ++   M +  + P+   YN 
Sbjct: 268 AKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNS 327

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ G+  +A +L  E+    + P + TY+ LI  L   +R  EA  +FE    +G
Sbjct: 328 LIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEG 387

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +L + V +N+LIDG C  G +++A  +  +M    V P+ +T++TL+ G C+   ++ A 
Sbjct: 388 ILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAM 447

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M  + + PD +       TY A+I G CK      A +L  +M+  GITP+  T 
Sbjct: 448 GIYSEMVIKSLSPDVV-------TYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTI 500

Query: 301 FSLIEGIASVDKAAES 316
             L++G+    K +++
Sbjct: 501 SCLLDGLCKDGKISDA 516



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 167/320 (52%), Gaps = 14/320 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  T+G  + G+CK G ++ A  +   M +  + P    YN+LID YC  G+
Sbjct: 278 MLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGD 337

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   E+ +  + P   TY++LI  L    +  EA ++ ++M ++GI+ +S+TYN 
Sbjct: 338 VSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNS 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G   KA  +  +M   G++P ++T+++LI    K   +  A  ++   + K 
Sbjct: 398 LIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKS 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V + A+IDGHC  G+++ A  L  +M    + P+  T + L+ G C+ GK+ +A 
Sbjct: 458 LSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDAL 517

Query: 241 RLLDQ----------MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
            L  +          +   G KP   +     + Y ALI GLC++ +   A +L  +M  
Sbjct: 518 ELFTEKIEFQTPRCNVDAGGSKPSLTN----HVAYTALIHGLCQDGQFSKAVKLFSDMRR 573

Query: 291 KGITPDDNTYFSLIEGIASV 310
            G+ PD+  Y  ++ G+  V
Sbjct: 574 YGLQPDEVIYVVMLRGLFQV 593



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 158/318 (49%), Gaps = 15/318 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS    P+   YG  +  +CK   +EEA  M  ++   G   T    N L+      G 
Sbjct: 108 LKSSKFTPN--VYGELIIVLCKMELVEEALSMYHKV---GAALTIQACNVLLYVLVKTGR 162

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E+ +   +EM+  G+ P+  T+  LI     +  ++ A +M  EM  KGIVP  I Y I
Sbjct: 163 FELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTI 222

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C     ++A S+H  M   G+ P + TY +L+    K     +A +L+++ L +G
Sbjct: 223 LIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEG 282

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F  LIDG C  G ++ A +L   M +  V P+   YN+L+   C+ G V EA 
Sbjct: 283 LVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAM 342

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++R  + PD         TY+ LI+GLC     + A  +  +M  +GI  +  TY
Sbjct: 343 ALFLELERFEVSPD-------VFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTY 395

Query: 301 FSLIEGIA---SVDKAAE 315
            SLI+G      +DKA E
Sbjct: 396 NSLIDGCCKEGKMDKALE 413



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 139/286 (48%), Gaps = 12/286 (4%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           L ++K +   P    Y  LI   C    +E A S      K G   T    N+L++ L+ 
Sbjct: 105 LSRLKSSKFTPN--VYGELIIVLCKMELVEEALSMYH---KVGAALTIQACNVLLYVLVK 159

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
             +      + +EM   G+ P  IT+  LI+G CR G+  +A  + DEM  KGI PT++ 
Sbjct: 160 TGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIV 219

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           YT LI  L   N++ EA+ +       G+ P++  +N L+DG+C   N ++A  L ++M 
Sbjct: 220 YTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDML 279

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              + PD VT+  L+ G C+ G+++ AR L   M +        S  P    YN+LI   
Sbjct: 280 GEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIK-------FSVTPNIAVYNSLIDAY 332

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           CK  +   A  L  E+    ++PD  TY  LI G+ SV +  E+ N
Sbjct: 333 CKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGN 378



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 19/149 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE----------NGLVPTA---VT 47
           M   G+ P+ YT    + G+CK+G++ +A  +  +  E           G  P+    V 
Sbjct: 488 MLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVA 547

Query: 48  YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK--MVEADDMLKE 105
           Y  LI G C  G    A     +M + G+ P    Y +++  L   +   M+   DMLK 
Sbjct: 548 YTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYILMMLHADMLK- 606

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKA 134
               G++P+S  + IL   Y   G  K A
Sbjct: 607 ---FGVIPNSAVHVILCECYQESGFLKSA 632



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 97/244 (39%), Gaps = 51/244 (20%)

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           ML+ +    + PDS+   +L      C +  KA    +    K IQ     Y+++I VL 
Sbjct: 19  MLQVVSLSSLTPDSLITTVL-----NCRSPWKALEFFNAAPEKNIQ----LYSAIIHVLV 69

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
               +  A  L  + +             L+  H      + AFS L  +   K  P+  
Sbjct: 70  GSKLLSHARYLLNDLVQN-----------LVKSHKPYHACQLAFSELSRLKSSKFTPN-- 116

Query: 222 TYNTLMHGRCRQGKVEEARR----------------LLDQMKRRG-------IKPDHIS- 257
            Y  L+   C+   VEEA                  LL  + + G       I  + IS 
Sbjct: 117 VYGELIIVLCKMELVEEALSMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISN 176

Query: 258 -FNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
             +P+ +T+  LI G C+  +GDL  A+E+  EM  KGI P    Y  LI G+ S +K  
Sbjct: 177 GLSPSVITFGTLIDGCCR--QGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIE 234

Query: 315 ESSN 318
           E+ +
Sbjct: 235 EAES 238


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 183/316 (57%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G +PD  TY   ++G+CKEGRL+EA + L  M   G  P  +T+N ++   C+ G 
Sbjct: 108 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 167

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++G  P+  T+N+LI+ L  +  +  A D+L++M   G  P+S++YN 
Sbjct: 168 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 227

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A    D M+ +G  P ++TY +L+  L K  ++  A ++     +KG
Sbjct: 228 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 287

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  ERA  LL EM R  + PD +TY++L+ G  R+GKV+EA 
Sbjct: 288 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAI 347

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +    ++  GI+P+ I       TYN+++ GLCK+++ D A + L  M+SK   P + TY
Sbjct: 348 KFFHDLEGLGIRPNAI-------TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATY 400

Query: 301 FSLIEGIASVDKAAES 316
             LIEGIA    A E+
Sbjct: 401 TILIEGIAYEGLAKEA 416



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 142/251 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+   ++ +C++G L  A  +LE+M  +G  P +++YN L+ G+C +  
Sbjct: 178 MLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKK 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + D MV +G  P   TYN L+  L  + K+  A ++L ++  KG  P  ITYN 
Sbjct: 238 MDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 297

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L DEM  KG++P ++TY+SL+  LS++ ++ EA + F +    G
Sbjct: 298 VIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG 357

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +N+++ G C +   +RA   L  M   +  P E TY  L+ G   +G  +EA 
Sbjct: 358 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 417

Query: 241 RLLDQMKRRGI 251
            LL+++  RG+
Sbjct: 418 DLLNELCSRGL 428



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 9/243 (3%)

Query: 73  KQGIMP--TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           +Q + P  + S ++  +     E  + +A  +L EM  KG  PD +TYN+LING C+ G 
Sbjct: 73  QQTLFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGR 132

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             +A    + M   G QP ++T+  ++  +    R ++A++L  + L KG  P +V FN 
Sbjct: 133 LDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNI 192

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LI+  C  G + RA  +L++M      P+ ++YN L+HG C++ K++ A   LD M  RG
Sbjct: 193 LINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG 252

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
             PD +       TYN L+  LCK+ + D+A E+L ++ SKG +P   TY ++I+G++ V
Sbjct: 253 CYPDIV-------TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKV 305

Query: 311 DKA 313
            K 
Sbjct: 306 GKT 308



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 97/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY + ++ +CK+G+++ A  +L Q+   G  P  +TYNT+IDG    G 
Sbjct: 248 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 307

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    DEM ++G+ P   TY+ L+  L  E K+ EA     ++   GI P++ITYN 
Sbjct: 308 TERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNS 367

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+     +A      MI K  +PT  TYT LI  ++ +    EA  L     ++G
Sbjct: 368 IMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 427

Query: 181 ML 182
           ++
Sbjct: 428 LV 429



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 67/115 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PD  TY S VSG+ +EG+++EA +    ++  G+ P A+TYN+++ G C    
Sbjct: 318 MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 377

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            + A  F   M+ +   PT +TY +LI  +  E    EA D+L E+  +G+V  S
Sbjct: 378 TDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKS 432



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P++ TY S + G+CK  + + A   L  M      PT  TY  LI+G   +G  + A
Sbjct: 357 GIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 416

Query: 65  FSFRDEMVKQGIMPTAST 82
               +E+  +G++  +S 
Sbjct: 417 LDLLNELCSRGLVKKSSA 434


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 176/317 (55%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD  T+ + + G  +EG +  A R+ EQM   G   + VT N L+ GYC +G 
Sbjct: 237 MGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGR 296

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   SF DEM  +G  P   T+N L++ L     +  A ++L  M ++G  PD  TYN 
Sbjct: 297 IEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNS 356

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+ G  ++A  + ++MI +   P  +TY +LI  L K+N++ EA +L     +KG
Sbjct: 357 LIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 416

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+  FN+LI G C   N   A  L +EM     HPDE TYN L+   C +G++EEA 
Sbjct: 417 ILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEAL 476

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M+  G   + +       TYN LI G CKN+  + AEE+  EM  +GI+ +  TY
Sbjct: 477 SLLKEMESSGCSRNVV-------TYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTY 529

Query: 301 FSLIEGIASVDKAAESS 317
            +LI+G+    +  E++
Sbjct: 530 NTLIDGLCKNRRVEEAA 546



 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/317 (36%), Positives = 174/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +PD +T+ S V+G+C+ G ++ A  +L+ M + G  P   TYN+LI G C  G 
Sbjct: 307 MSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGE 366

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    ++M+ +   P   TYN LI  L  E ++ EA ++ + +  KGI+PD  T+N 
Sbjct: 367 VEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 426

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C   N + A  L +EM  KG  P   TY  LI  L  + R+ EA  L +   + G
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              ++V +N LIDG C N  IE A  +  EM+   +  + VTYNTL+ G C+  +VEEA 
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAA 546

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L+DQM   G+KPD       + TYN+L+   C+  +   A ++++ M S G  PD  TY
Sbjct: 547 QLMDQMLMEGLKPD-------KFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTY 599

Query: 301 FSLIEGIASVDKAAESS 317
            +LI G++   +   +S
Sbjct: 600 GTLILGLSKAGRVELAS 616



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 168/306 (54%), Gaps = 7/306 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   P++ TY + +S +CKE ++EEA+ +   +   G++P   T+N+LI G C   N  +
Sbjct: 380 RDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRL 439

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EM  +G  P   TYN+LI  L    ++ EA  +LKEM   G   + +TYN LI+
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+    ++A  + DEM  +GI   ++TY +LI  L K  R+ EA QL +  L +G+ P
Sbjct: 500 GFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKP 559

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +N+L+   C  G+I++A  +++ M      PD VTY TL+ G  + G+VE A RLL
Sbjct: 560 DKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLL 619

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             ++ +G     +   P   TYN +I+ L + +    A  L REM+ KG  PD  TY  +
Sbjct: 620 RTVQLKG-----MVLAPQ--TYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVV 672

Query: 304 IEGIAS 309
             G+ S
Sbjct: 673 FRGLCS 678



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 152/313 (48%), Gaps = 10/313 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G  PD +TY   +  +C  GRLEEA  +L++M+ +G     VTYNTLIDG+C    
Sbjct: 447 MKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKR 506

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM  QGI     TYN LI  L   R++ EA  ++ +M  +G+ PD  TYN 
Sbjct: 507 IEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNS 566

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  +CR G+ KKA  +   M   G +P  +TY +LI  LSK  R+  A +L      KG
Sbjct: 567 LLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKG 626

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M+     +N +I           A  L +EM      PD VTY  +  G C   G + EA
Sbjct: 627 MVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEA 686

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
              L +M  +G  PD  SF         L +GLC     D   +L+  ++ +    D   
Sbjct: 687 VDFLVEMTDKGFLPDFSSF-------LMLAEGLCALSMEDTLIKLVNRVMKQANFSDSEV 739

Query: 300 YFSLIEGIASVDK 312
             S+I G   + K
Sbjct: 740 --SMIMGFLKIRK 750



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ D++TY   ++ +    +L+    +  +M   G+ P   T+N LI   C    +  A
Sbjct: 171 GLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPA 230

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM   G+ P   T+  L+   + E  M  A  + ++M   G    ++T N+L++G
Sbjct: 231 ILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHG 290

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G  ++  S  DEM ++G +P   T+ SL+  L +   +  A ++ +  L +G  PD
Sbjct: 291 YCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPD 350

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I  +N+LI G C  G +E A  +L +M      P+ VTYNTL+   C++ +VEEA  L  
Sbjct: 351 IFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELAR 410

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +  +GI PD         T+N+LIQGLC      LA EL  EM +KG  PD+ TY  LI
Sbjct: 411 VLTSKGILPDVC-------TFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLI 463

Query: 305 EGIASVDKAAES 316
           + + S  +  E+
Sbjct: 464 DSLCSRGRLEEA 475



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 159/314 (50%), Gaps = 14/314 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G+ PD  T+ S + G+C       A  + E+MK  G  P   TYN LID  C++G 
Sbjct: 412 LTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGR 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A S   EM   G      TYN LI      +++ EA+++  EM  +GI  + +TYN 
Sbjct: 472 LEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNT 531

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+    ++A  L D+M+ +G++P   TY SL+    +   + +A  + +   + G
Sbjct: 532 LIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG 591

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK--EMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
             PD V +  LI G    G +E A  LL+  ++  M + P   TYN ++    R+ +  E
Sbjct: 592 CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQ--TYNPVIKALFREKRTSE 649

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPD 296
           A RL  +M  +G  PD +       TY  + +GLC    G + E  + L EM  KG  PD
Sbjct: 650 AVRLFREMMEKGDPPDAV-------TYKVVFRGLCSGG-GPIGEAVDFLVEMTDKGFLPD 701

Query: 297 DNTYFSLIEGIASV 310
            +++  L EG+ ++
Sbjct: 702 FSSFLMLAEGLCAL 715



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 160/309 (51%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           MK  G +    T+   +    K    +EA  +++ M+E  GL   A TYN L++   +  
Sbjct: 131 MKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGN 190

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L++       MV +GI P  +T+N+LI  L    ++  A  M++EMG  G+ PD  T+ 
Sbjct: 191 KLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFT 250

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+ G+   GN   A  + ++M+  G   + +T   L+    K+ R+ E     +    +
Sbjct: 251 TLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNE 310

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD   FN+L++G C  G+++ A  +L  M +    PD  TYN+L+ G C+ G+VEEA
Sbjct: 311 GFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEA 370

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L+QM  R        F+P  +TYN LI  LCK  + + A EL R + SKGI PD  T
Sbjct: 371 VEILNQMILR-------DFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT 423

Query: 300 YFSLIEGIA 308
           + SLI+G+ 
Sbjct: 424 FNSLIQGLC 432


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  213 bits (543), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 172/308 (55%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K  G  P  + Y + ++ +CK+G+ +EA  + ++M E GL    VTY+ LID +C +G 
Sbjct: 357 VKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGK 416

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A  F  +M+  GI  T   YN LI+       +  A     EM +KG+ P  ++Y  
Sbjct: 417 LDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTS 476

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC  G   +AF L+ EM  KGI P   T+T+LI  L + NRM +A +LF+  L + 
Sbjct: 477 LISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQN 536

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+P+ V +N +I+GHC  GN  +AF LL +M +  + PD  TY  L+   C  G+V EA+
Sbjct: 537 MMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAK 596

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDN 298
           + +D + R     +H   N   + Y+AL+ G CK  EG L + L   REMV +G+  D  
Sbjct: 597 KFIDDLHR-----EHFKLN--EMCYSALLHGYCK--EGRLRDALGVCREMVKRGVDMDLV 647

Query: 299 TYFSLIEG 306
            Y  LI+G
Sbjct: 648 CYAVLIDG 655



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+     TY + V G+CK    E  + ++++M E G VPT    ++L++G   KG +  
Sbjct: 290 KGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVD 349

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF   + + K G MP+   YN LI+ L  + K  EA+ + KEMGEKG+  + +TY+ILI+
Sbjct: 350 AFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILID 409

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +CR G    A     +MI  GI+ T+  Y SLI    K   +  A   F+  + KG+ P
Sbjct: 410 SFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKP 469

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +V + +LI G+C  G +  AF L  EM    + P+  T+ TL+    R  ++ +A RL 
Sbjct: 470 TVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLF 529

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D+M  + + P+ +       TYN +I+G CK      A ELL +MV KG+ PD  TY  L
Sbjct: 530 DEMLEQNMMPNEV-------TYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPL 582

Query: 304 IEGIASVDKAAES 316
           I  + S  +  E+
Sbjct: 583 ISSLCSTGRVCEA 595



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 171/352 (48%), Gaps = 45/352 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++   Y Y S ++G CK G L  A    ++M + GL PT V+Y +LI GYCNKG L  A
Sbjct: 431 GIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEA 490

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EM  +GI P   T+  LI  L    +M +A  +  EM E+ ++P+ +TYN++I G
Sbjct: 491 FRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEG 550

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF-------- 176
           +C+ GN  KAF L ++M+ KG+ P   TY  LI  L    R+ EA +  ++         
Sbjct: 551 HCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLN 610

Query: 177 ---------------------------LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
                                      + +G+  D+V +  LIDG     +    F LLK
Sbjct: 611 EMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLK 670

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M   ++ PD+V Y +++ G  + G V++A  + D M   G  P+ +       TY  LI
Sbjct: 671 NMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIV-------TYTTLI 723

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAESSN 318
             LCK    D AE L +EM+    TP+  TY   ++ +A   S++KA +  N
Sbjct: 724 NELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHN 775



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 167/340 (49%), Gaps = 41/340 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD+YTY   +S +C  GR+ EA + ++ +         + Y+ L+ GYC +G 
Sbjct: 567 MVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGR 626

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EMVK+G+      Y +LI   + E+       +LK M ++ + PD + Y  
Sbjct: 627 LRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTS 686

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-- 178
           +I+GY + G+ KKAF + D MI +G  P ++TYT+LI  L K   M +A+ L++  L   
Sbjct: 687 MIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSN 746

Query: 179 --------------------------------KGMLPDIVMFNALIDGHCTNGNIERAFS 206
                                           KG+L + V +N L+ G C  G +E A  
Sbjct: 747 STPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATK 806

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           LL EM    + PD +TY+T+++  CR+G ++ A    D M  +G+KPD        L YN
Sbjct: 807 LLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPD-------TLAYN 859

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            LI G C   E   A EL  +M+ +G+ P+  T+ SL  G
Sbjct: 860 FLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHG 899



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 170/331 (51%), Gaps = 27/331 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++YT+ + +S + +  R+ +A R+ ++M E  ++P  VTYN +I+G+C +GN
Sbjct: 497 MTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGN 556

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF   ++MV++G++P   TY  LI  L    ++ EA   + ++  +    + + Y+ 
Sbjct: 557 TVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSA 616

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC+ G  + A  +  EM+ +G+   ++ Y  LI    K+        L +N   + 
Sbjct: 617 LLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQR 676

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++ ++IDG+   G++++AF +   M      P+ VTY TL++  C+ G +++A 
Sbjct: 677 LRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAE 736

Query: 241 RLLDQMKRRGIKPDHISFN---------------------------PTRLTYNALIQGLC 273
            L  +M      P+H+++                               ++YN L++G C
Sbjct: 737 LLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFC 796

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           K    + A +LL EM+   I PD  TY ++I
Sbjct: 797 KLGRVEEATKLLDEMIDNAIFPDCITYSTII 827



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 131/270 (48%), Gaps = 34/270 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV  D   Y   + G  KE        +L+ M +  L P  V Y ++IDGY   G+
Sbjct: 637 MVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGS 696

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
           ++ AF   D M+ +G  P   TY  LI+EL     M +A+ + KEM              
Sbjct: 697 VKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCC 756

Query: 107 --------GE------------KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
                   G             KG++ ++++YNIL+ G+C+ G  ++A  L DEMI   I
Sbjct: 757 FLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAI 816

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P  +TY+++I+   ++  +  A + ++  L KG+ PD + +N LI G C  G + +AF 
Sbjct: 817 FPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFE 876

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           L  +M R  V P++ T+ +L HG  R+  +
Sbjct: 877 LRDDMIRRGVKPNQATHKSLSHGASRKFSI 906



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 13/267 (4%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           +++ ++ LI  Y  +  +  +      M +  +MP   T   +++ L   R++     + 
Sbjct: 157 SSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLF 216

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK--GIQPTMLTYTSLIFVLS 161
            E+   GI PD   Y  +I  +C   N  KA     EMI +       ++ Y  LI  L 
Sbjct: 217 GEILSMGIRPDIYIYVAVIRSFCELKNFAKA----KEMIQRMESSDLNVVVYNVLIHGLC 272

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  R+ EA ++    + KG+    V +  L+ G C     E    ++ EM  +   P E 
Sbjct: 273 KNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEA 332

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
             ++L+ G  R+GKV +A  L++++K+ G         P+   YNALI  LCK+ + D A
Sbjct: 333 ALSSLVEGLRRKGKVVDAFDLVNRVKKVGAM-------PSLFVYNALINSLCKDGKFDEA 385

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIA 308
           E L +EM  KG+  +D TY  LI+   
Sbjct: 386 ELLFKEMGEKGLCANDVTYSILIDSFC 412



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 59/269 (21%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL-HDE 140
           ++ +LIH L+       A  +L+ +  +G +     +  L++ + +C       SL  D 
Sbjct: 107 SFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFIS---SLGFDL 163

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           +I   +Q   +  + LIF L +Q  +               +P +     +++G      
Sbjct: 164 LIQSYVQEKRMFDSVLIFRLMRQCEL---------------MPQVRTLGEVLNGLAKIRR 208

Query: 201 IERAFSLLKEMDRMKVHPD---------------------------------EVTYNTLM 227
           ++    L  E+  M + PD                                  V YN L+
Sbjct: 209 VDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLI 268

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           HG C+  +V EA  + + + ++G+         + +TY  L+ GLCK QE ++   ++ E
Sbjct: 269 HGLCKNKRVWEAVEIKNGLIQKGL-------TASEVTYCTLVLGLCKVQEFEVGAGVMDE 321

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAES 316
           M+  G  P +    SL+EG+    K  ++
Sbjct: 322 MIELGFVPTEAALSSLVEGLRRKGKVVDA 350


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 180/344 (52%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PD  ++ S V    + G L  A    E+MK  GLVP  V Y  LI+GYC   +
Sbjct: 355 MLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDD 414

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   R+EMV++G +    TYN L++ L   + + +AD++ KEM E+G+ PD  T   
Sbjct: 415 VSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTT 474

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN  KA SL + M  + ++P ++TY +L+    K   M +A +L+ + +++ 
Sbjct: 475 LIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISRE 534

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + F+ LI+G C+ G +  AF L  EM    + P  VT NT++ G  R G + +A 
Sbjct: 535 IFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKAN 594

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L+ M   G+ PD I++N                            P  +TYNA++ G 
Sbjct: 595 DFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGF 654

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            ++     AE +L +M+ KGI PD +TY SLI G  S D   E+
Sbjct: 655 SRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEA 698



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 180/332 (54%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P  +TY + ++G+CKEG  E A R+L++M   GL P A T+N ++   C K +
Sbjct: 285 MAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKED 344

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM+++G++P   +++ ++       ++  A    ++M   G+VPD++ Y I
Sbjct: 345 VWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTI 404

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCR  +   A  + +EM+ +G    ++TY +L+  L +   + +AD+LF+  + +G
Sbjct: 405 LINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERG 464

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD      LI G+C +GN+ +A SL + M    + PD VTYNTLM G C+ G++E+A+
Sbjct: 465 VFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAK 524

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L   M  R I P +ISF+                            PT +T N +I+G 
Sbjct: 525 ELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGY 584

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +      A + L  M+S+G+ PD  TY +LI
Sbjct: 585 LRAGNLSKANDFLNTMISEGVPPDCITYNTLI 616



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 171/334 (51%), Gaps = 28/334 (8%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           YT    V+ +CK+G+L+     L +M+E G+    VTYNTL++ YC +G +  AF   D 
Sbjct: 225 YTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDC 284

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M  +G+ P   TYN LI+ L  E     A  +L EM   G+ P++ T+N ++   CR  +
Sbjct: 285 MAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKED 344

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             +A  + +EM+ +G+ P +++++S++ V S+   +  A   FE     G++PD V++  
Sbjct: 345 VWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTI 404

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LI+G+C N ++  A  +  EM       D VTYNTL++G CR   +++A  L  +M  RG
Sbjct: 405 LINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERG 464

Query: 251 IKPDHI----------------------------SFNPTRLTYNALIQGLCKNQEGDLAE 282
           + PD                              S  P  +TYN L+ G CK  E + A+
Sbjct: 465 VFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAK 524

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           EL  +M+S+ I P   ++  LI G  S+   +E+
Sbjct: 525 ELWYDMISREIFPSYISFSILINGFCSLGLVSEA 558



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   D  TY + ++G+C+   L++A  + ++M E G+ P   T  TLI GYC  GN
Sbjct: 425 MVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGN 484

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  + M  + + P   TYN L+       +M +A ++  +M  + I P  I+++I
Sbjct: 485 MTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSI 544

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C  G   +AF L DEM  KGI+PT++T  ++I    +   + +A+      +++G
Sbjct: 545 LINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N LI+      N +RAF L+  M+   + P+ VTYN ++ G  R G+++EA 
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            +L +M  +GI PD       + TY +LI G         A  +  EM+ +G  PDD
Sbjct: 665 MVLHKMIDKGINPD-------KSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDD 714



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 161/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG         + +  + K G ++ A ++ E   ++G +    T N +++  C  G 
Sbjct: 180 LRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGK 239

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+    +  EM ++G+     TYN L++       + EA  ++  M  KG+ P   TYN 
Sbjct: 240 LDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNA 299

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G+ ++A  + DEM+  G+ P   T+  ++    ++  + EA+++F   L +G
Sbjct: 300 LINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRG 359

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD++ F++++     NG + RA +  ++M  + + PD V Y  L++G CR   V  A 
Sbjct: 360 VVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGAL 419

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ ++M  RG   D +       TYN L+ GLC+ +  D A+EL +EMV +G+ PD  T 
Sbjct: 420 KMRNEMVERGCVMDVV-------TYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTL 472

Query: 301 FSLIEG 306
            +LI G
Sbjct: 473 TTLIHG 478



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 28/292 (9%)

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
            V ++ LI  Y     L         + K+G   + +  N L+  ++    +  A  + +
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           +  + G + +  T NI++N  C+ G          EM  KG+   ++TY +L+    ++ 
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            + EA  L +    KG+ P +  +NALI+G C  G+ ERA  +L EM  + + P+  T+N
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFN 333

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------------------- 259
            ++   CR+  V EA R+ ++M +RG+ PD ISF+                         
Sbjct: 334 PMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGV 393

Query: 260 ---PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
              P  + Y  LI G C+N +   A ++  EMV +G   D  TY +L+ G+ 
Sbjct: 394 GLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLC 445



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 101/251 (40%), Gaps = 43/251 (17%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P  S    LIH L+  +K+ EA  +L  +  K  V      + LI+      N+ +   +
Sbjct: 97  PNPSIIATLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVVV 156

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
            D +I   +Q                 ++ E  + F+    +G    I   NAL+     
Sbjct: 157 FDLLIRTYVQ---------------ARKLREGSEAFQLLRKRGFCVSINACNALLGAIVK 201

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G ++ A+ + ++  +     +  T N +++  C+ GK++     L +M+ +G+  D ++
Sbjct: 202 VGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVT 261

Query: 258 FN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMV 289
           +N                            P   TYNALI GLCK    + A+ +L EM+
Sbjct: 262 YNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEML 321

Query: 290 SKGITPDDNTY 300
             G+ P+  T+
Sbjct: 322 GVGLCPNAATF 332


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 179/346 (51%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+SR V PD   + S +S   + G L++A      +KE GL+P  V Y  LI GYC KG 
Sbjct: 356 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A + R+EM++QG      TYN ++H L   + + EAD +  EM E+G+ PDS T  I
Sbjct: 416 ISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN + A  L  +M  K I+  ++TY +L+    K   +  A +++ + ++K 
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 535

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP  + F+ L++  C+ G++  AF +  EM    + P  +  N+++ G CR G   +  
Sbjct: 536 ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGE 595

Query: 241 RLLDQMKRRGIKPDHISFN------------------------------PTRLTYNALIQ 270
             L++M   G  PD IS+N                              P   TYN+++ 
Sbjct: 596 IFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILH 655

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           G C+  +   AE +LR+M+ +G+ PD +TY SLI G  S D   E+
Sbjct: 656 GFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEA 701



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 175/371 (47%), Gaps = 63/371 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +GV PD  TY + +S    +G +EEA  ++  M   G  P   TYNT+I+G C  G 
Sbjct: 251 VQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGK 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
            E A     EM++ G+ P ++TY  L+ E   +   VE +++  +M              
Sbjct: 311 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSS 370

Query: 107 ---------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                 E G++PD++ Y ILI GYCR G   +A +L +EM+ +G
Sbjct: 371 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQG 430

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               ++TY +++  L K+  + EAD+LF     +G+ PD      LIDGHC  GN++ A 
Sbjct: 431 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAM 490

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
            L K+M   ++  D VTYNTL+ G  + G ++ A+ +   M  + I P  ISF+      
Sbjct: 491 ELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNAL 550

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 PT +  N++I+G C++      E  L +M+S+G  PD 
Sbjct: 551 CSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDC 610

Query: 298 NTYFSLIEGIA 308
            +Y +LI G  
Sbjct: 611 ISYNTLIYGFV 621



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 159/299 (53%), Gaps = 9/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   D  TY + + G+CK   L EA ++  +M E GL P + T   LIDG+C  GN
Sbjct: 426 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGN 485

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     +M ++ I     TYN L+        +  A ++  +M  K I+P  I+++I
Sbjct: 486 LQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSI 545

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+N  C  G+  +AF + DEMI K I+PT++   S+I    +     + +   E  +++G
Sbjct: 546 LVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEG 605

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK--VHPDEVTYNTLMHGRCRQGKVEE 238
            +PD + +N LI G     N+ +AF L+K+M+  +  + PD  TYN+++HG CR+ +++E
Sbjct: 606 FVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKE 665

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           A  +L +M  RG+ PD       R TY +LI G         A     EM+ +G +PDD
Sbjct: 666 AEAVLRKMIERGVNPD-------RSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDD 717



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 167/314 (53%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  + YT    V+ +CK+G++E+    L +++E G+ P  VTYNTLI  Y ++G +E A
Sbjct: 220 GVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEA 279

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F     M  +G  P   TYN +I+ L    K   A ++  EM   G+ PDS TY  L+  
Sbjct: 280 FELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 339

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+A +  ++  +M  + + P ++ ++S++ + ++   + +A   F +    G++PD
Sbjct: 340 ACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 399

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V++  LI G+C  G I  A +L  EM +     D VTYNT++HG C++  + EA +L +
Sbjct: 400 NVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 459

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  RG+ PD         T   LI G CK      A EL ++M  K I  D  TY +L+
Sbjct: 460 EMTERGLFPDS-------YTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLL 512

Query: 305 EG---IASVDKAAE 315
           +G   +  +D A E
Sbjct: 513 DGFGKVGDIDTAKE 526



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S+G         + +  + + G +E A R+ +++  +G+     T N +++  C  G 
Sbjct: 181 LRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGK 240

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   +F  E+ ++G+ P   TYN LI     +  M EA +++  M  KG  P   TYN 
Sbjct: 241 MEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNT 300

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G  ++A  +  EM+  G+ P   TY SL+    K+   +E + +F +  ++ 
Sbjct: 301 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRD 360

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F++++     +GN+++A      +    + PD V Y  L+ G CR+G + EA 
Sbjct: 361 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAM 420

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M ++G   D +       TYN ++ GLCK +    A++L  EM  +G+ PD  T 
Sbjct: 421 NLRNEMLQQGCAMDVV-------TYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTL 473

Query: 301 FSLIEG 306
             LI+G
Sbjct: 474 TILIDG 479



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 144/344 (41%), Gaps = 45/344 (13%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN--------- 60
           S +  + +  + + GRL +A   + +M     V      N+L+  Y N G+         
Sbjct: 103 SLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFDLLI 162

Query: 61  --------LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
                   L  A+     +  +G   +    N LI  L+    +  A  + +E+   G+ 
Sbjct: 163 RTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVG 222

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
            +  T NI++N  C+ G  +K  +   E+  KG+ P ++TY +LI   S Q  M EA +L
Sbjct: 223 VNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFEL 282

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
                +KG  P +  +N +I+G C +G  ERA  +  EM R  + PD  TY +L+   C+
Sbjct: 283 MHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 342

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLT 264
           +G   E   +   M+ R + PD + F+                            P  + 
Sbjct: 343 KGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVI 402

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           Y  LIQG C+      A  L  EM+ +G   D  TY +++ G+ 
Sbjct: 403 YTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLC 446


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 171/332 (51%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   TY SF+ G+CK GR+ +A + L  M  N L+P  V+YNTLI GYC  GN
Sbjct: 330 MVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF   DE+    + PT  TYN L+  L  + ++  A  +  EM  +GI PD +TY I
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G+   A    DEM+H+G++     Y + I    K      A  L E  LAKG
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 509

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++++N ++DG C  GN+E A  LL++M    V PD VTY +++H     G++ + R
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGR 569

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +  +M  +G+ P  +++                             P  +TYN+LI GL
Sbjct: 570 EIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           CK +  D A     EMV KGI P+  +Y  LI
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILI 661



 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 177/343 (51%), Gaps = 42/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P+  TY   ++G+ K+G  E+A  ++ +M + GL  +A TYN LI GY NKG 
Sbjct: 260 MQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGM 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S ++EMV +G  PT +TYN  I+ L    +M +A   L +M    ++PD ++YN 
Sbjct: 320 LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNT 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR GN  KAF L DE+    + PT++TY +L+  L +Q  +  A QL    + +G
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 439

Query: 181 MLPDIVMFNALIDGHCTNGNI-----------------------------------ERAF 205
           + PDIV +  L++G C  G++                                    RAF
Sbjct: 440 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF 499

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           SL +EM      PD + YN ++ G C+ G +EEA  LL +M   G+ PD++       TY
Sbjct: 500 SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYV-------TY 552

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            ++I    +N       E+  EM+SKG+TP   TY  LI G A
Sbjct: 553 TSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHA 595



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR + PD       +  +  +  + +A  +   M E G+ PT VTYNTL+D YC  G 
Sbjct: 191 IKSR-LSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 249

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G  P   TYN+LI+ L  + +  +A  ++ EM + G+   + TYN 
Sbjct: 250 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 309

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY   G   +A SL +EM+ KG  PT+ TY S I+ L K  RM +A Q   + LA  
Sbjct: 310 LIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 369

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V +N LI G+C  GN+ +AF L  E+  + + P  VTYNTL+ G CRQG++E A+
Sbjct: 370 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 429

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   GI PD +       TY  L+ G CK     +A+E   EM+ +G+  D   Y
Sbjct: 430 QLKVEMINEGIAPDIV-------TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAY 482

Query: 301 FSLIEG 306
            + I G
Sbjct: 483 ATRIVG 488



 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 176/340 (51%), Gaps = 42/340 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + PD  +Y + + G C+ G L +A  + ++++   L PT VTYNTL+DG C +G 
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIH----------------ELLME----------R 94
           LE+A   + EM+ +GI P   TY +L++                E+L E           
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484

Query: 95  KMV---------EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           ++V          A  + +EM  KG  PD I YN++++G C+ GN ++A  L  +M+  G
Sbjct: 485 RIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +TYTS+I    +  R+ +  ++F   L+KG+ P +V +  LI GH   G +ERAF
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAF 604

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
               EM    + P+ +TYN+L++G C+  ++++A     +M  +GI P+       + +Y
Sbjct: 605 IYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPN-------KYSY 657

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
             LI   C       A  L ++M+ +G+ PD  T+ +L++
Sbjct: 658 TILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 148/275 (53%), Gaps = 7/275 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ PD  TY   V+G CK G L  A    ++M   GL   +  Y T I G    G+
Sbjct: 435 MINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGD 494

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AFS ++EM+ +G  P    YN+++  L     + EA ++L++M   G++PD +TY  
Sbjct: 495 TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTS 554

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +   G  +K   +  EM+ KG+ P+++TYT LI   + + R+  A   F     KG
Sbjct: 555 IIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKG 614

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+++ +N+LI+G C    +++A++   EM    + P++ +Y  L++  C  G  +EA 
Sbjct: 615 ILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEAL 674

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
            L  QM  RG++PD         T++AL++ L K+
Sbjct: 675 SLYKQMLDRGVQPDSC-------THSALLKQLGKD 702



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 137/284 (48%), Gaps = 28/284 (9%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           LI  Y  K  +E   S  D+M+K  + P     N ++  L  +  M +A ++ + MGE G
Sbjct: 170 LIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFG 229

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           I P  +TYN L++ YC+ G  ++   L  EM  +G  P  +TY  LI  LSK+    +A 
Sbjct: 230 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAK 289

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            L    L  G+      +N LI G+   G +  A SL +EM      P   TYN+ ++G 
Sbjct: 290 GLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGL 349

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PTR 262
           C+ G++ +A + L  M    + PD +S+N                            PT 
Sbjct: 350 CKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +TYN L+ GLC+  E ++A++L  EM+++GI PD  TY  L+ G
Sbjct: 410 VTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNG 453



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 98/166 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV PD  TY S +    + GRL +   +  +M   GL P+ VTY  LI G+  KG 
Sbjct: 540 MVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGR 599

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF +  EM ++GI+P   TYN LI+ L   R+M +A +   EM EKGI P+  +Y I
Sbjct: 600 LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTI 659

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           LIN  C  GN ++A SL+ +M+ +G+QP   T+++L+  L K  ++
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKL 705



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-DMLKEMGEKGIVPDSITYNIL---IN 123
           R E V   I+   +  NL+     +  +++ A+   + ++   G V   ++  IL   I 
Sbjct: 113 RSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIW 172

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            Y +    ++  S+ D+MI   + P +     ++ +L  ++ M +A +++      G+ P
Sbjct: 173 VYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKP 232

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            IV +N L+D +C  G +++   LL EM R    P++VTYN L++G  ++G+ E+A+ L+
Sbjct: 233 TIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLI 292

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M + G+K    ++NP  L Y    +G+        A  L  EMV KG +P   TY S 
Sbjct: 293 GEMLKTGLKVSAYTYNP--LIYGYFNKGMLAE-----ALSLQEEMVLKGASPTVATYNSF 345

Query: 304 IEGIASVDKAAES 316
           I G+  + + +++
Sbjct: 346 IYGLCKLGRMSDA 358


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R  +P+ +TY   V  MCKE +L+E+ R+L +M E GLVP+ VTYN LI GYC +G 
Sbjct: 345 MRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGR 404

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      M      P   TYN LI      + + +A  +L +M E  + P  +TYN 
Sbjct: 405 IEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNS 464

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G+   A+ L D +   G+ P   TY+  I  L K  RM EA  LF +   KG
Sbjct: 465 LIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKG 524

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + VM+ ALIDGHC  G I+ A SLL+ M      P+  TYN+L++G C++GKV+E  
Sbjct: 525 IKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGL 584

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +++ M + G+K       PT  TY  LI+ + +  + D A  +  +MVS G  PD  TY
Sbjct: 585 SMVENMSKMGVK-------PTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTY 637

Query: 301 FSLIEGIASVDKAAES 316
            + I    +     E+
Sbjct: 638 TAFIHTYCTSGNVKEA 653



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 157/318 (49%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P   TY + + G C+EGR+E A  +L  M+ N   P   TYN LI G+  + +
Sbjct: 380 MMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKH 439

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M++  + P+  TYN LIH          A  +L  + E G+VPD  TY++
Sbjct: 440 VHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSV 499

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I+  C+    ++A  L + +  KGI+   + YT+LI    K  ++ EA  L E   ++ 
Sbjct: 500 FIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSED 559

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+   +N+LI G C  G ++   S+++ M +M V P   TY  L+    R+G  + A 
Sbjct: 560 CLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHAN 619

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ +QM   G KPD         TY A I   C +     AE ++  M+  G+ PD  TY
Sbjct: 620 RVFNQMVSFGHKPD-------VYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTY 672

Query: 301 FSLIEGIASVDKAAESSN 318
             LI     +  A ++ N
Sbjct: 673 TLLISAYERLGLAYDAFN 690



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 161/312 (51%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PDS+TY S + G C+   +  A ++   M   G     V+Y T+I G C  G ++  
Sbjct: 244 GLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEG 303

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   +M +    PT  TY ++IH L    + +E  D+  EM E+   P+  TY ++++ 
Sbjct: 304 ISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDA 363

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     ++  + +EM+ KG+ P+++TY +LI    ++ R+  A ++     +    P+
Sbjct: 364 MCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPN 423

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +N LI G     ++ +A +LL +M   K+ P  VTYN+L+H +C+ G  + A +LLD
Sbjct: 424 ERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLD 483

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +K  G+ PD       + TY+  I  LCK++  + A +L   +  KGI  ++  Y +LI
Sbjct: 484 LLKENGLVPD-------QWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536

Query: 305 EGIASVDKAAES 316
           +G     K  E+
Sbjct: 537 DGHCKAGKIDEA 548



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 165/343 (48%), Gaps = 48/343 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG-YCNKG 59
           M ++G + +  +Y + + G+C+ GR++E   + ++M+E+   PT  TY  +I   + N  
Sbjct: 275 MPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDR 334

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           NLE      +EM ++   P   TY +++  +  ERK+ E+  +L EM EKG+VP  +TYN
Sbjct: 335 NLE-GMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYN 393

Query: 120 ILINGYCR------------------------------CGNAK-----KAFSLHDEMIHK 144
            LI GYC                               CG +K     KA +L  +M+  
Sbjct: 394 ALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLES 453

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + P+++TY SLI V  K      A +L +     G++PD   ++  ID  C +  +E A
Sbjct: 454 KLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEA 513

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L   +    +  +EV Y  L+ G C+ GK++EA  LL++M      P+         T
Sbjct: 514 CDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPN-------SST 566

Query: 265 YNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIE 305
           YN+LI G+CK  EG + E L  +  M   G+ P   TY  LIE
Sbjct: 567 YNSLIYGVCK--EGKVQEGLSMVENMSKMGVKPTVATYTILIE 607



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S   +P+  TY   + G  K   + +A  +L +M E+ L P+ VTYN+LI   C  G+
Sbjct: 415 MESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGH 474

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+   D + + G++P   TY++ I  L   ++M EA D+   + EKGI  + + Y  
Sbjct: 475 FDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTA 534

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G   +A SL + M  +   P   TY SLI+ + K+ ++ E   + EN    G
Sbjct: 535 LIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMG 594

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +  LI+     G+ + A  +  +M      PD  TY   +H  C  G V+EA 
Sbjct: 595 VKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAE 654

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M   G+ PD        LTY  LI    +      A  +L+ M+  G  P    +
Sbjct: 655 GMMARMIEAGVMPD-------SLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIW 707

Query: 301 FSLIEGIAS 309
            +LI   AS
Sbjct: 708 NNLIWYKAS 716



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 147/335 (43%), Gaps = 28/335 (8%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           +Y   +  + +   ++E  R+  +M  + +VP   T NT+++ Y   GN+  A  +  ++
Sbjct: 181 SYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKI 240

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
            + G+ P + TY  LI        +  A  +   M  KG   + ++Y  +I+G C  G  
Sbjct: 241 FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRI 300

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +  SL  +M      PT+ TYT +I  L   +R +E   LF     +   P++  +  +
Sbjct: 301 DEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVM 360

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           +D  C    ++ +  +L EM    + P  VTYN L+ G C +G++E A  +L  M+    
Sbjct: 361 VDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNC 420

Query: 252 KPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEE 283
           +P+  ++N                            P+ +TYN+LI   CK    D A +
Sbjct: 421 RPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYK 480

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LL  +   G+ PD  TY   I+ +    +  E+ +
Sbjct: 481 LLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACD 515


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 172/342 (50%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+QPD  TY S ++G CK G L+EA  +   ++  GL PT +TYN LIDGYC  G+
Sbjct: 369 MRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP------- 113
           LE A   ++EMV+QG +P   TY +L+        +  A +   EM  KG+ P       
Sbjct: 429 LEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNT 488

Query: 114 ----------------------------DSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                       D++TYNILI+G C+ GN   A  L  +M+H G
Sbjct: 489 RIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNG 548

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +QP  +TYT LI    ++  + EA + F++ ++ G+ P  V +   I  +C  GN+  A+
Sbjct: 549 LQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAY 608

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
              ++M    V P+E+TYN L+H  CR G+ + A R   +M  RG+ P+       + TY
Sbjct: 609 GWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPN-------KYTY 661

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             LI G CK    + A     EM   GI PD  T+ +L +G 
Sbjct: 662 TLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGF 703



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 161/334 (48%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P   TY + + G+ + G++E A     +M+  GL P  +TYN+L++GYC  G+
Sbjct: 334 MENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGS 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     ++   G+ PT  TYN+LI        + EA  + +EM E+G +PD  TY I
Sbjct: 394 LKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTI 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G     +   A    DEM+ KG+QP    Y + I        + +A +L E  + +G
Sbjct: 454 LMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V +N LIDG C  GN+  A  L  +M    + PD +TY  L+H  C +G + EAR
Sbjct: 514 ISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREAR 573

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +    M   G+ P  +++                             P  +TYN LI  L
Sbjct: 574 KFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 633

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C+     LA     EM+ +G+ P+  TY  LI+G
Sbjct: 634 CRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDG 667



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 160/305 (52%), Gaps = 8/305 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +  G  P+  T+   ++G+ ++G LEEA+ M+E M+ +    ++ TYN LI G   KG +
Sbjct: 266 RGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKA-SSFTYNPLITGLLAKGFV 324

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A   + EM  +GIMPT  TYN +IH LL   ++  A     EM   G+ PD ITYN L
Sbjct: 325 KKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSL 384

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +NGYC+ G+ K+A  L  ++ H G+ PT+LTY  LI    +   + EA +L E  + +G 
Sbjct: 385 LNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGC 444

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           LPD+  +  L+ G     ++  A     EM    + PD   YNT +      G + +A R
Sbjct: 445 LPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFR 504

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L + M   GI  D +       TYN LI GLCK    + A++L  +MV  G+ PD  TY 
Sbjct: 505 LREVMMLEGISSDTV-------TYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYT 557

Query: 302 SLIEG 306
            LI  
Sbjct: 558 CLIHA 562



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 14/320 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG- 59
           M S GV PD       +  +    R ++   +  +M + G+ P+ VTYNTL+D +  +G 
Sbjct: 193 MASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGR 252

Query: 60  NLEMAFSFRD-EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSI 116
           N ++A   ++ E    G +P   T+N++I  L  +  + EA +M++ M   +K     S 
Sbjct: 253 NDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKA---SSF 309

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN LI G    G  KKA  L  EM ++GI PT++TY ++I  L +  ++  A   F   
Sbjct: 310 TYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEM 369

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
            A G+ PD++ +N+L++G+C  G+++ A  L  ++    + P  +TYN L+ G CR G +
Sbjct: 370 RAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDL 429

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           EEARRL ++M  +G  PD         TY  L++G        +A E   EM+SKG+ PD
Sbjct: 430 EEARRLKEEMVEQGCLPD-------VCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPD 482

Query: 297 DNTYFSLIEGIASVDKAAES 316
              Y + I    ++   A++
Sbjct: 483 CFAYNTRIRAELTLGAIAKA 502



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 10/216 (4%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
             EM   G+ PD    N ++             ++H EM+  GI+P+++TY +L+    K
Sbjct: 190 FHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLK 249

Query: 163 QNRMIEADQLFENFLAKG--MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
           + R  +   L +    +G   LP+ V  N +I G    G++E A  +++ M R+      
Sbjct: 250 EGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGM-RLSKKASS 308

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TYN L+ G   +G V++A  L  +M+  GI P       T +TYNA+I GL ++ + + 
Sbjct: 309 FTYNPLITGLLAKGFVKKADDLQLEMENEGIMP-------TVVTYNAMIHGLLQSGQVEA 361

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           A+    EM + G+ PD  TY SL+ G        E+
Sbjct: 362 AQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEA 397



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 10/175 (5%)

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
            S   EM   G+ P +     ++ VLS   R  +   +    L  G+ P IV +N L+D 
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 195 HCTNGNIERAFSLLKEMDRM--KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
               G  ++   LLKEM+       P++VT+N ++ G  R+G +EEA  +++ M+     
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMR----- 301

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              +S   +  TYN LI GL        A++L  EM ++GI P   TY ++I G+
Sbjct: 302 ---LSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGL 353


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 178/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+PDS TY   + G C+   +  A  +L++MK+  L PT +TY+ +I+G C  GN
Sbjct: 381 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+   +   EMV  G+ P A  Y  L+     E ++ E+  +L+ M E+GI+PD   YN 
Sbjct: 441 LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNS 500

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++A +   EM+ + ++P   TY + I   SK   M  AD+ F   L+ G
Sbjct: 501 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 560

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++ ++ ALI+GHC  GN+  AFS+ + +   +V  D  TY+ L+HG  R GK+ EA 
Sbjct: 561 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAF 620

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +++ +G+ P+         TYN+LI G CK    D A +LL EM  KGI PD  TY
Sbjct: 621 GIFSELQEKGLLPN-------AFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 673

Query: 301 FSLIEGIASVDKAAESSN 318
             LI+G+    +   + N
Sbjct: 674 NILIDGLCKAGEIERAKN 691



 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 188/341 (55%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  V PD YTY + +S  CK G +++A R+L +M E G  P  VTYN +I G C    
Sbjct: 206 MCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARL 265

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A   +  MV +G++P   TY++LI+   ME++  EA  ML EM + G+ P+ ITYN 
Sbjct: 266 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 325

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ R G+ ++AF + DEM+  GI+  ++ + +L+  + K  +M +A ++ +  + KG
Sbjct: 326 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 385

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-------- 232
           + PD   ++ LI+GHC   N+ RAF LL EM + K+ P  +TY+ +++G CR        
Sbjct: 386 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 445

Query: 233 ---------------------------QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                                      +G+VEE+R +L++M+ +GI PD          Y
Sbjct: 446 AILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPD-------VFCY 498

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           N+LI G CK +  + A   L EM+ + + P+ +TY + I+G
Sbjct: 499 NSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDG 539



 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 8/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R ++P+++TYG+F+ G  K G +E A R   +M   G++P    Y  LI+G+C +GN
Sbjct: 521 MLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGN 580

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AFS    ++ + ++    TY++LIH L    KM EA  +  E+ EKG++P++ TYN 
Sbjct: 581 VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNS 640

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ GN  KA  L +EM  KGI P ++TY  LI  L K   +  A  LF++   +G
Sbjct: 641 LISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRG 700

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V + A++DG+C + N   AF LL+EM    V PD   YN +++  C++ K E+A 
Sbjct: 701 LTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKAL 760

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G          + +++N LI+G CK+ +   A  LL EM+ K   P+  TY
Sbjct: 761 DLFQEMLEKGF--------ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTY 812

Query: 301 FSLIE 305
            SLI+
Sbjct: 813 TSLID 817



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 174/306 (56%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD YTY   ++G C E R  EA  ML +M + GL P  +TYN LIDG+  +G+
Sbjct: 276 MVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGD 335

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF  +DEMV  GI      +N L++ +    KM +A ++++EM EKG+ PDS TY++
Sbjct: 336 IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSL 395

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+CR  N  +AF L DEM  + + PT+LTY+ +I  L +   +   + +    +  G
Sbjct: 396 LIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG 455

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++  L+  H   G +E +  +L+ M    + PD   YN+L+ G C+  ++EEAR
Sbjct: 456 LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEAR 515

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M  R ++P+         TY A I G  K  E ++A+    EM+S G+ P+   Y
Sbjct: 516 TYLMEMLERRLRPN-------AHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIY 568

Query: 301 FSLIEG 306
            +LIEG
Sbjct: 569 TALIEG 574



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 174/300 (58%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P++  Y + ++   KEGR+EE+  +LE+M+E G++P    YN+LI G+C    
Sbjct: 451 MVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKR 510

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A ++  EM+++ + P A TY   I       +M  AD    EM   G++P+   Y  
Sbjct: 511 MEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTA 570

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ GN  +AFS+   ++ + +   + TY+ LI  LS+  +M EA  +F     KG
Sbjct: 571 LIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG 630

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+   +N+LI G C  GN+++A  LL+EM    ++PD VTYN L+ G C+ G++E A+
Sbjct: 631 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 690

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D ++ RG+ P+ +       TY A++ G CK++    A +LL EM+ +G+ PD   Y
Sbjct: 691 NLFDDIEGRGLTPNCV-------TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY 743



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 171/318 (53%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  TY   + G+CK G +E A  + + ++  GL P  VTY  ++DGYC   N
Sbjct: 661 MCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKN 720

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF   +EM+ +G+ P A  YN++++    E K  +A D+ +EM EKG    ++++N 
Sbjct: 721 PTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNT 779

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC+ G  ++A  L +EMI K   P  +TYTSLI    K   M EA +L+     + 
Sbjct: 780 LIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERN 839

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + +L+ G+   GN+    +L +EM    + PD++TY  ++   CR+G V EA 
Sbjct: 840 VMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEAC 899

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D++  +G+ P  ++       Y+ALIQ LCK +E     +LL E+   G      T 
Sbjct: 900 KLKDEILVKGM-PMSVA------AYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTC 952

Query: 301 FSLIEGI---ASVDKAAE 315
             +  G     ++D+AAE
Sbjct: 953 SVIARGFQIAGNMDEAAE 970



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 170/310 (54%), Gaps = 7/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P   +  S +  + K  ++E   ++ + M  + ++P   TY  +I  +C  GN++ A  
Sbjct: 177 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EM ++G  P   TYN++I  L   R + EA ++ + M +KG+VPD  TY+ILING+C
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFC 296

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
               +++A  +  EMI  G++P  +TY +LI    +Q  + +A ++ +  +A G+  +++
Sbjct: 297 MEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLI 356

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           ++N L++G C  G +E+A  +++EM    V PD  TY+ L+ G CR   +  A  LLD+M
Sbjct: 357 IWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEM 416

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           K+R +        PT LTY+ +I GLC+         +LREMV  G+ P+   Y +L+  
Sbjct: 417 KKRKLA-------PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 469

Query: 307 IASVDKAAES 316
            A   +  ES
Sbjct: 470 HAKEGRVEES 479



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 130/258 (50%), Gaps = 1/258 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PD++ Y   ++  CKE + E+A  + ++M E G   T V++NTLI+GYC  G 
Sbjct: 731 MLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST-VSFNTLIEGYCKSGK 789

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM+++  +P   TY  LI        M EA  +  EM E+ ++P + TY  
Sbjct: 790 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 849

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY   GN  +  +L +EM+ KGI+P  +TY  +I    ++  ++EA +L +  L KG
Sbjct: 850 LLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG 909

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M   +  ++ALI   C          LL E+          T + +  G    G ++EA 
Sbjct: 910 MPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAA 969

Query: 241 RLLDQMKRRGIKPDHISF 258
            +L  M + G   +  S 
Sbjct: 970 EVLRSMVKFGWVSNTTSL 987



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%)

Query: 10   SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
            + ++ + + G CK G+L+EA+ +LE+M E   +P  VTY +LID  C  G +  A     
Sbjct: 774  TVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWL 833

Query: 70   EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
            EM ++ +MPTA TY  L+H       M E   + +EM  KGI PD +TY ++I+ YCR G
Sbjct: 834  EMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREG 893

Query: 130  NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
            N  +A  L DE++ KG+  ++  Y +LI  L K+    E  +L       G    +   +
Sbjct: 894  NVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCS 953

Query: 190  ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
             +  G    GN++ A  +L+ M +     +  +   L+ G       E++  LL QM
Sbjct: 954  VIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 178/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+PDS TY   + G C+   +  A  +L++MK+  L PT +TY+ +I+G C  GN
Sbjct: 372 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 431

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+   +   EMV  G+ P A  Y  L+     E ++ E+  +L+ M E+GI+PD   YN 
Sbjct: 432 LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNS 491

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++A +   EM+ + ++P   TY + I   SK   M  AD+ F   L+ G
Sbjct: 492 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 551

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++ ++ ALI+GHC  GN+  AFS+ + +   +V  D  TY+ L+HG  R GK+ EA 
Sbjct: 552 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAF 611

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +++ +G+ P+         TYN+LI G CK    D A +LL EM  KGI PD  TY
Sbjct: 612 GIFSELQEKGLLPNA-------FTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 664

Query: 301 FSLIEGIASVDKAAESSN 318
             LI+G+    +   + N
Sbjct: 665 NILIDGLCKAGEIERAKN 682



 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 8/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R ++P+++TYG+F+ G  K G +E A R   +M   G++P    Y  LI+G+C +GN
Sbjct: 512 MLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGN 571

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AFS    ++ + ++    TY++LIH L    KM EA  +  E+ EKG++P++ TYN 
Sbjct: 572 VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNS 631

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ GN  KA  L +EM  KGI P ++TY  LI  L K   +  A  LF++   +G
Sbjct: 632 LISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRG 691

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V + A++DG+C + N   AF LL+EM    V PD   YN +++  C++ K E+A 
Sbjct: 692 LTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKAL 751

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G          + +++N LI+G CK+ +   A  LL EM+ K   P+  TY
Sbjct: 752 DLFQEMLEKGF--------ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTY 803

Query: 301 FSLIE 305
            SLI+
Sbjct: 804 TSLID 808



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 174/306 (56%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD YTY   ++G C E R  EA  ML +M + GL P  +TYN LIDG+  +G+
Sbjct: 267 MVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGD 326

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF  +DEMV  GI      +N L++ +    KM +A ++++EM EKG+ PDS TY++
Sbjct: 327 IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSL 386

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+CR  N  +AF L DEM  + + PT+LTY+ +I  L +   +   + +    +  G
Sbjct: 387 LIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNG 446

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++  L+  H   G +E +  +L+ M    + PD   YN+L+ G C+  ++EEAR
Sbjct: 447 LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEAR 506

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M  R ++P+         TY A I G  K  E ++A+    EM+S G+ P+   Y
Sbjct: 507 TYLMEMLERRLRPNA-------HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIY 559

Query: 301 FSLIEG 306
            +LIEG
Sbjct: 560 TALIEG 565



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 174/300 (58%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P++  Y + ++   KEGR+EE+  +LE+M+E G++P    YN+LI G+C    
Sbjct: 442 MVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKR 501

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A ++  EM+++ + P A TY   I       +M  AD    EM   G++P+   Y  
Sbjct: 502 MEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTA 561

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ GN  +AFS+   ++ + +   + TY+ LI  LS+  +M EA  +F     KG
Sbjct: 562 LIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKG 621

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+   +N+LI G C  GN+++A  LL+EM    ++PD VTYN L+ G C+ G++E A+
Sbjct: 622 LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 681

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D ++ RG+ P+ +       TY A++ G CK++    A +LL EM+ +G+ PD   Y
Sbjct: 682 NLFDDIEGRGLTPNCV-------TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY 734



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 167/315 (53%), Gaps = 2/315 (0%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ PD  TY   + G+CK G +E A  + + ++  GL P  VTY  ++DGYC   N   
Sbjct: 655 KGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTA 714

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF   +EM+ +G+ P A  YN++++    E K  +A D+ +EM EKG    ++++N LI 
Sbjct: 715 AFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIE 773

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+ G  ++A  L +EMI K   P  +TYTSLI    K   M EA +L+     + ++P
Sbjct: 774 GYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 833

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
               + +L+ G+   GN+    +L +EM    + PD++TY  ++   CR+G V EA +L 
Sbjct: 834 TAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLK 893

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D++  +G+ P    F     T + + +G       D A E+LR MV  G   +  +   L
Sbjct: 894 DEILVKGM-PMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDL 952

Query: 304 IEGIASVDKAAESSN 318
           ++G  +   + +S N
Sbjct: 953 VDGNQNGANSEDSDN 967



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 170/323 (52%), Gaps = 24/323 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-----------------GLVP 43
           M +  V PD YTY + +S  CK G +++A R+L +M E                  GLVP
Sbjct: 215 MCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVP 274

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
              TY+ LI+G+C +     A     EM+  G+ P   TYN LI   + +  + +A  + 
Sbjct: 275 DLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIK 334

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            EM   GI  + I +N L+NG C+ G  +KA  +  EM+ KG++P   TY+ LI    + 
Sbjct: 335 DEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRG 394

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
             M  A +L +    + + P ++ ++ +I+G C  GN++   ++L+EM    + P+ V Y
Sbjct: 395 QNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVY 454

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
            TLM    ++G+VEE+R +L++M+ +GI PD          YN+LI G CK +  + A  
Sbjct: 455 TTLMTAHAKEGRVEESRMILERMREQGILPD-------VFCYNSLIIGFCKAKRMEEART 507

Query: 284 LLREMVSKGITPDDNTYFSLIEG 306
            L EM+ + + P+ +TY + I+G
Sbjct: 508 YLMEMLERRLRPNAHTYGAFIDG 530



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 161/326 (49%), Gaps = 24/326 (7%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+S  +   +    K G L EA  +    K     P+ ++ N+L+        +E+ +  
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-----------------KG 110
            D M    ++P   TY  +I        + +A  +L EMGE                 KG
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           +VPD  TY+ILING+C    +++A  +  EMI  G++P  +TY +LI    +Q  + +A 
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAF 331

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           ++ +  +A G+  +++++N L++G C  G +E+A  +++EM    V PD  TY+ L+ G 
Sbjct: 332 RIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGH 391

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           CR   +  A  LLD+MK+R +        PT LTY+ +I GLC+         +LREMV 
Sbjct: 392 CRGQNMARAFELLDEMKKRKLA-------PTVLTYSVIINGLCRCGNLQGTNAILREMVM 444

Query: 291 KGITPDDNTYFSLIEGIASVDKAAES 316
            G+ P+   Y +L+   A   +  ES
Sbjct: 445 NGLKPNAVVYTTLMTAHAKEGRVEES 470



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 129/252 (51%), Gaps = 13/252 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RGV PD++ Y   ++  CKE + E+A  + ++M E G   T V++NTLI+GYC  G L+ 
Sbjct: 725 RGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST-VSFNTLIEGYCKSGKLQE 783

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EM+++  +P   TY  LI        M EA  +  EM E+ ++P + TY  L++
Sbjct: 784 ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH 843

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM-- 181
           GY   GN  +  +L +EM+ KGI+P  +TY  +I    ++  ++EA +L +  L KGM  
Sbjct: 844 GYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPM 903

Query: 182 -------LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
                  LP     + +  G    GN++ A  +L+ M +     +  +   L+ G     
Sbjct: 904 KSGFRLGLPTC---SVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGA 960

Query: 235 KVEEARRLLDQM 246
             E++  LL QM
Sbjct: 961 NSEDSDNLLKQM 972


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 181/350 (51%), Gaps = 42/350 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD Y + + ++  CK G++E+A ++   M++ G+ P  VTYN LI G C  GNL+ 
Sbjct: 307 QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDE 366

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F+++MVK G+  T  TY++LI+ L+   K  EA+ +LKE  EKG  P+ + YN LI+
Sbjct: 367 AFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLID 426

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+ GN   A  +  +M+ KGI P  +T  S+I    K  +M +A+ + E  L++G   
Sbjct: 427 GYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSI 486

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE----------------------- 220
           +   F  +I   C N   E A   L+EM    + P++                       
Sbjct: 487 NPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELW 546

Query: 221 ------------VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
                       VT N L+HG C+ G ++EA RLL +M  RG   D       ++TYN L
Sbjct: 547 FRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD-------KITYNTL 599

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           I G CK  + +   +L  EMV +GI PD  TY  LI G+  + K  E+ N
Sbjct: 600 ISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVN 649



 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 168/318 (52%), Gaps = 45/318 (14%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G   +  T  + + G+CK G ++EA R+L++M E G V   +TYNTLI G C +G +E 
Sbjct: 552 KGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEE 611

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP---------- 113
            F  R EMVKQGI P   TYNLLIH +    K+ EA ++  E   + +VP          
Sbjct: 612 GFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMID 671

Query: 114 -------------------------DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                    +S+ YN LI  YCR GN  +AF LHD+M  KGI P
Sbjct: 672 GYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP 731

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T  TY+SLI  +    RM +A  L +    +G+LP++V + ALI G+C  G +++  ++L
Sbjct: 732 TTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVL 791

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           +EM    +HP+++TY  ++ G  + G ++ A +LL +M  +GI PD +       TYN L
Sbjct: 792 QEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV-------TYNVL 844

Query: 269 IQGLCKN---QEGDLAEE 283
             G CK    +EG L  E
Sbjct: 845 TNGFCKEGKIEEGKLLAE 862



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 175/343 (51%), Gaps = 28/343 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R ++P+     + V G+CKEG+  +A  +  ++ E G     VT N LI G C  GN
Sbjct: 514 MLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGN 573

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M+++G +    TYN LI     E K+ E   +  EM ++GI PD+ TYN+
Sbjct: 574 MQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNL 633

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR G   +A +L +E   + + P + TY  +I    K +++ E ++LF   L + 
Sbjct: 634 LIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 693

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++N LI  +C NGN   AF L  +M    + P   TY++L+HG C  G++E+A+
Sbjct: 694 LELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAK 753

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            L+D+M++ G+ P+ + +                            +P ++TY  +I G 
Sbjct: 754 CLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGY 813

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            K+ +   A +LL EMV KGI PD  TY  L  G     K  E
Sbjct: 814 SKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEE 856



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 172/350 (49%), Gaps = 42/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK----------------------- 37
           M+  GV P+  TY + + G+CK G L+EA R  E+M                        
Sbjct: 339 MEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEK 398

Query: 38  ------------ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                       E G  P  V YNTLIDGYC  GNL  A   R +MV +GI P + T N 
Sbjct: 399 FNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNS 458

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I       +M +A+ +L+EM  +G   +   +  +I+  C     + A     EM+ + 
Sbjct: 459 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRN 518

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P     T+L+  L K+ +  +A +L+   L KG   ++V  NALI G C  GN++ A 
Sbjct: 519 MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAV 578

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            LLK+M       D++TYNTL+ G C++GKVEE  +L  +M ++GI+PD         TY
Sbjct: 579 RLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD-------TFTY 631

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           N LI G+C+  + D A  L  E  S+ + P+  TY  +I+G    DK  E
Sbjct: 632 NLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 681



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 151/281 (53%), Gaps = 8/281 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           +   G+ PT  T   L+        LE ++ +  E ++QG+ P    ++  I+      K
Sbjct: 270 LANKGVFPTVKTCTFLLSSLVKANELEKSY-WVFETMRQGVSPDVYLFSTAINAFCKGGK 328

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           + +A  +  +M + G+ P+ +TYN LI+G C+ GN  +AF   ++M+  G+  T++TY+ 
Sbjct: 329 VEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSV 388

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           LI  L K  +  EA+ + +  L KG  P+ V++N LIDG+C  GN+  A  +  +M    
Sbjct: 389 LINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKG 448

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           ++P+ VT N+++ G C+ G++E+A  +L++M  RG      S NP   T   +I  LC N
Sbjct: 449 INPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRG-----FSINPGAFT--TIIHWLCMN 501

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              + A   LREM+ + + P+D    +L+ G+    K +++
Sbjct: 502 SRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDA 542



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 121/207 (58%), Gaps = 13/207 (6%)

Query: 103 LKEMGEKGIVPDSITYNILINGYC---RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
           L E+GE G+   ++  ++LI+ YC   R    + A  +   + +KG+ PT+ T T L+  
Sbjct: 231 LNEVGESGVAVAAV--DLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSS 288

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K N + ++  +FE  + +G+ PD+ +F+  I+  C  G +E A  L  +M+++ V P+
Sbjct: 289 LVKANELEKSYWVFET-MRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPN 347

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            VTYN L+HG C+ G ++EA R  ++M + G+       N T +TY+ LI GL K ++ +
Sbjct: 348 VVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGV-------NATLITYSVLINGLMKLEKFN 400

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG 306
            A  +L+E + KG TP++  Y +LI+G
Sbjct: 401 EANSVLKETLEKGFTPNEVVYNTLIDG 427


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/318 (36%), Positives = 180/318 (56%), Gaps = 15/318 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   D  TY + + G+C + R+ EA+++   MK+ G  P A+ Y TL+ G C  G 
Sbjct: 36  MVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGK 95

Query: 61  LEMAFSFRDEMV----KQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           + +A     EM+    + GI   PT  +Y+++I  L  +R+  EA ++ KEM  +G++PD
Sbjct: 96  INIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPD 155

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            I+Y  LI+G+CR G  +KA  L +EM+  GI+  + T + LI +L K+ ++IEA++L E
Sbjct: 156 VISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLE 215

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G + DIV ++ LI G C    I  A  L   M ++   PD + Y TLM G C+ G
Sbjct: 216 VMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTG 275

Query: 235 KVEEARRL----LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
            +  A +L    L+   R GIK       PT ++Y+ +I GLCK++  D A EL +EM +
Sbjct: 276 NINTALQLHQEMLNDTGRYGIK-----CKPTLISYSIIIDGLCKDRREDEARELFKEMKA 330

Query: 291 KGITPDDNTYFSLIEGIA 308
           +GI PD  +Y +LI G  
Sbjct: 331 QGIMPDVISYTTLIHGFC 348



 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 178/322 (55%), Gaps = 7/322 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   D  TY + + G+C + R+ EA+R+   M++ G  P A+ Y TL+ G C  GN
Sbjct: 217 MIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGN 276

Query: 61  LEMAFSFRDEMV----KQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           +  A     EM+    + GI   PT  +Y+++I  L  +R+  EA ++ KEM  +GI+PD
Sbjct: 277 INTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPD 336

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            I+Y  LI+G+C  G  +KA  L +EM+  GIQP + T + LI +L K+ ++IEA++L E
Sbjct: 337 VISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLE 396

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G +PD+V    L+ G C    I +A  L  +M ++   P+ VT  TLM G C+ G
Sbjct: 397 VVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSG 456

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            ++ A  L   M      P  I+  P  ++Y+ +I GLCK    D A EL +EM + G+ 
Sbjct: 457 NIKIALELHKNM-LSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVI 515

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           PD  +Y SLI G     K  ++
Sbjct: 516 PDVISYTSLIHGFCRSGKWKDA 537



 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 182/325 (56%), Gaps = 15/325 (4%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD  T  + V G+C + R+ +A+++  +M++ G +P  VT  TL+ G C  GN+++
Sbjct: 401 RGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKI 460

Query: 64  AFSFRDEMVKQ----GI--MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           A      M+      GI   P A +Y+++I  L    +  EA ++ KEM   G++PD I+
Sbjct: 461 ALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVIS 520

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI+G+CR G  K A  L +EM+  G+QP + T++ LI +L K+ ++IEA++L E  +
Sbjct: 521 YTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMI 580

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G +P+ V +  L+ G C N  I  A  L  +M ++   PD VTY TLM G C+ G ++
Sbjct: 581 QRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIK 640

Query: 238 EA----RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            A    +++L    + G      +F P  ++Y+ +I GLCK+   D A EL +EM + G+
Sbjct: 641 TALELHKKMLSDTGQYG-----TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 695

Query: 294 TPDDNTYFSLIEGIASVDKAAESSN 318
            P+  +Y SLI G     K  ++ +
Sbjct: 696 IPNVISYTSLIHGFCRSGKLEDAKH 720



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 167/288 (57%), Gaps = 15/288 (5%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P++ +Y   + G+CK GR +EA  + ++MK  G++P  ++Y +LI G+C  G  + A  
Sbjct: 480 KPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY 539

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +EMV  G+ P  +T+++LI  L  E K++EA+++L+ M ++G +P+++TY  L+ G C
Sbjct: 540 LFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLC 599

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA------KG 180
                 +A  L  +M   G  P ++TY +L+  L +   +  A +L +  L+        
Sbjct: 600 MNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN 659

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ ++ +IDG C +G  + A  L KEM  + V P+ ++Y +L+HG CR GK+E+A+
Sbjct: 660 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 719

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
            L ++M  +G++ + +       TY+ +I G CK  EG + + L ++M
Sbjct: 720 HLFNEMVDQGVQLNAV-------TYSVMIHGFCK--EGQIDKALFQKM 758



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 139/245 (56%), Gaps = 6/245 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ GV PD  +Y S + G C+ G+ ++A  +  +M + G+ P   T++ LID  C +G 
Sbjct: 509 MKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGK 568

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M+++G +P   TY  L+  L M  ++ EA  +  +M + G +PD +TY  
Sbjct: 569 VIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGT 628

Query: 121 LINGYCRCGNAKKAFSLHDEMIH------KGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           L+ G C+ GN K A  LH +M+          +P +++Y+ +I  L K  R  EA +LF+
Sbjct: 629 LMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFK 688

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
              A G++P+++ + +LI G C +G +E A  L  EM    V  + VTY+ ++HG C++G
Sbjct: 689 EMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEG 748

Query: 235 KVEEA 239
           ++++A
Sbjct: 749 QIDKA 753



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+H GIQP + T   LI +  K+ ++IEA++L E  + +G + DIV ++ LI G C    
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA----RRLLDQMKRRGIKPDHI 256
           I  A  L   M ++   PD + Y TLM G C+ GK+  A    + +L+   + GIK    
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIK---- 116

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              PT ++Y+ +I GLCK++  D A EL +EM ++G+ PD  +Y SLI G     K  ++
Sbjct: 117 -CKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKA 175


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 169/304 (55%), Gaps = 10/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD YTYG+F+ G+CK GR+++A  M E+M+E G+ P  V + TLID +C +GN
Sbjct: 305 MAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGN 364

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +        EM  +GI      YN L + L   R +  A+D+++EM   G+ PD +TY  
Sbjct: 365 VAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTT 424

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G    A  +  EM  +G+    +TYT+LI  LSK  R ++++++    +  G
Sbjct: 425 LIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAG 484

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  +ID  C N +++  F LLKEM      P  VTYN +M+G C  G+++ A 
Sbjct: 485 LEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNAD 544

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M   G+ PD I       TYN L+ G CK+ +   AEEL     +KG+  D   Y
Sbjct: 545 MLLNAMLNIGVCPDDI-------TYNILLDGHCKHGKVRDAEEL---KSAKGMVSDFGLY 594

Query: 301 FSLI 304
            SLI
Sbjct: 595 TSLI 598



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 158/303 (52%), Gaps = 7/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P++  +   +  M + G+L  A  M ++M   G+ PT VT+NTL+ G C   +L  A
Sbjct: 239 GVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSA 298

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            + R  M K G+ P   TY   +  L    ++ +A +M +EM E+G+ P+++ +  LI+ 
Sbjct: 299 NALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDA 358

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ GN      LH EM  +GI+  ++ Y +L   L +   +  A+ + E     G+ PD
Sbjct: 359 HCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPD 418

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +  LIDG C  G ++ A  + +EM    V  DEVTY TL+ G  + G+  ++ R+L 
Sbjct: 419 KVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILC 478

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G++PD+        TY  +I   CKN +     +LL+EM +KG  P   TY  ++
Sbjct: 479 EMMEAGLEPDNT-------TYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVM 531

Query: 305 EGI 307
            G 
Sbjct: 532 NGF 534



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 142/253 (56%), Gaps = 7/253 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A++F  +++  G+ P A  +N+L+ +++   K+  A +M  EM  +G+ P  +T+N L++
Sbjct: 228 AYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMS 287

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+  +   A +L   M   G+ P + TY + +  L K  R+ +A ++FE    +G+ P
Sbjct: 288 GMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNP 347

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + V+F  LID HC  GN+     L +EM    +  D V YN L +G CR   ++ A  ++
Sbjct: 348 NTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIV 407

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M+  G+KPD       ++TY  LI G CK  E D+A E+ +EM  +G+  D+ TY +L
Sbjct: 408 EEMRNNGLKPD-------KVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTL 460

Query: 304 IEGIASVDKAAES 316
           I G++   ++ +S
Sbjct: 461 ISGLSKSGRSVDS 473



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           + EA     Q+ + G+ P A  +N L+      G L  A +  DEM+++G+ PT  T+N 
Sbjct: 225 VPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNT 284

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+  +     +  A+ +   M + G+ PD  TY   + G C+ G  + A  + +EM  +G
Sbjct: 285 LMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERG 344

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  + +T+LI    K+  +    +L      +G+  D+V +NAL +G C   +++ A 
Sbjct: 345 VNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAAN 404

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +++EM    + PD+VTY TL+ G C++G+++ A  +  +M   G+  D +       TY
Sbjct: 405 DIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEV-------TY 457

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             LI GL K+     +E +L EM+  G+ PD+ TY  +I+  
Sbjct: 458 TTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAF 499



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 28/209 (13%)

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R  +  +A++ + +++  G+ P    +  L+  + +  ++  A  +F+  L +G+ P +V
Sbjct: 221 RLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVV 280

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN L+ G C   ++  A +L   M +  V PD  TY   M G C+ G++++A  + ++M
Sbjct: 281 TFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEM 340

Query: 247 KRRGIKPDHISFN----------------------PTR------LTYNALIQGLCKNQEG 278
           + RG+ P+ + F                        TR      + YNAL  GLC+ ++ 
Sbjct: 341 RERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDL 400

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGI 307
             A +++ EM + G+ PD  TY +LI+G 
Sbjct: 401 KAANDIVEEMRNNGLKPDKVTYTTLIDGF 429


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 176/344 (51%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P++YTY   + G    G+ +E  +MLE+M   GL P   TY +L++  C  G 
Sbjct: 260 MIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGR 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  F D M+++GI P  STY +LIH    +  + E    L  M E G+ PD   +NI
Sbjct: 320 CREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNI 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
             + Y +CG   KA  + ++M   G+ P ++ Y +LI  L K  R+ +A+  F   + +G
Sbjct: 380 FFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEG 439

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV+FN+L+ G CT    ERA  L+ EM    + P+ V +NTL+   C  G+V E R
Sbjct: 440 VTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGR 499

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
           RL+D M+  G++PD  S+                            +PT +TYN L+ G 
Sbjct: 500 RLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGY 559

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C     D A  L REM+ KG+TP   TY +++ G+    + +E+
Sbjct: 560 CSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEA 603



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 167/351 (47%), Gaps = 45/351 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++PD YTYGS ++ +CK GR  EA    + M   G+ P   TY  LI GY  KG 
Sbjct: 295 MSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGA 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    SF D MV+ G+ P    +N+          + +A D+  +M + G+ P+ + Y  
Sbjct: 355 LSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGA 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++MI++G+ P ++ + SL++ L   ++   A++L    L +G
Sbjct: 415 LIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG 474

Query: 181 MLPDIVMFNALI-----------------------------------DGHCTNGNIERAF 205
           + P+ V FN LI                                    G+C  G  + A 
Sbjct: 475 ICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAE 534

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +   M  + + P EVTYNTL+HG C   ++++A  L  +M R+G+ P  +       TY
Sbjct: 535 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVV-------TY 587

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           N ++ GL + +    A+EL   M++ G   D  TY  ++ G+     VD+A
Sbjct: 588 NTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEA 638



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD + +  F S   K G +++A  +  +M+++GL P  V Y  LID  C  G 
Sbjct: 365 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G+ P    +N L++ L    K   A++++ EM ++GI P+++ +N 
Sbjct: 425 VDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNT 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C  G   +   L D M H G++P   +YT LI       R  EA+++F+  ++ G
Sbjct: 485 LICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIG 544

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +N L+ G+C+   I+ A+ L +EM R  V P  VTYNT++HG  +  +  EA+
Sbjct: 545 LSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAK 604

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   G K D         TYN ++ GLCK+   D A ++ + + SKG+  +  T+
Sbjct: 605 ELYLNMINSGTKCD-------IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 657

Query: 301 FSLIEGI 307
             +I  +
Sbjct: 658 TIMIGAL 664



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 158/312 (50%), Gaps = 7/312 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   P+  +Y   ++G   EG++++   +  +M + G+ P  VTY T+IDG C     + 
Sbjct: 193 RRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDR 252

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M+  G  P   TYN LIH  L   K  E   ML+EM  +G+ PD  TY  L+N
Sbjct: 253 AEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLN 312

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             C+ G  ++A    D MI KGI+P + TY  LI   + +  + E     +  +  G+ P
Sbjct: 313 YLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSP 372

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D  +FN     +   G I++A  +  +M +  + P+ V Y  L+   C+ G+V++A    
Sbjct: 373 DHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKF 432

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           +QM   G+ P+ + F       N+L+ GLC   + + AEEL+ EM+ +GI P+   + +L
Sbjct: 433 NQMINEGVTPNIVVF-------NSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTL 485

Query: 304 IEGIASVDKAAE 315
           I  + +V +  E
Sbjct: 486 ICNLCNVGRVME 497



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 164/315 (52%), Gaps = 10/315 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG---LVPTAVTYNTLIDGYCN 57
           M   G  PD+ +Y   + G+C E R EEA  +L  M ++      P  V+Y+ +I+G+  
Sbjct: 152 MPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFT 211

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++  ++   EM+ +GI P   TY  +I  L   +    A+ + ++M + G  P++ T
Sbjct: 212 EGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYT 271

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LI+GY   G  K+   + +EM  +G++P   TY SL+  L K  R  EA   F++ +
Sbjct: 272 YNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMI 331

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P +  +  LI G+ T G +    S L  M    + PD   +N       + G ++
Sbjct: 332 RKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMID 391

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  + ++M++ G+ P+ ++       Y ALI  LCK    D AE    +M+++G+TP+ 
Sbjct: 392 KAMDIFNKMRQHGLSPNVVN-------YGALIDALCKLGRVDDAEVKFNQMINEGVTPNI 444

Query: 298 NTYFSLIEGIASVDK 312
             + SL+ G+ +VDK
Sbjct: 445 VVFNSLVYGLCTVDK 459



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 133/249 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD+++Y   +SG C  GR +EA ++ + M   GL PT VTYNTL+ GYC+   
Sbjct: 505 MEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASR 564

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EM+++G+ P   TYN ++H L   ++  EA ++   M   G   D  TYNI
Sbjct: 565 IDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNI 624

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+     +AF +   +  KG+Q  ++T+T +I  L K  R  +A  LF    A G
Sbjct: 625 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANG 684

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V +  + +     G++E   SL   M++    P+    N L+     +G +  A 
Sbjct: 685 LVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAG 744

Query: 241 RLLDQMKRR 249
             L ++  R
Sbjct: 745 AYLSKLDER 753



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 148/306 (48%), Gaps = 11/306 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+   + S V G+C   + E A  ++ +M + G+ P AV +NTLI   CN G 
Sbjct: 435 MINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGR 494

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       D M   G+ P A +Y  LI    +  +  EA+ +   M   G+ P  +TYN 
Sbjct: 495 VMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNT 554

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC       A+ L  EM+ KG+ P ++TY +++  L +  R  EA +L+ N +  G
Sbjct: 555 LLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 614

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              DI  +N +++G C +  ++ AF + + +    +  + +T+  ++    + G+ E+A 
Sbjct: 615 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 674

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   +   G+ P+ +++   RL    LI      +EG L E   L   M   G  P+  
Sbjct: 675 DLFAAIPANGLVPNVVTY---RLVAENLI------EEGSLEEFDSLFSAMEKNGTAPNSQ 725

Query: 299 TYFSLI 304
              +L+
Sbjct: 726 MLNALV 731



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 30  SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89
           +RM+ +  +  + P   TY+ LI  +C  G+LE  F+    ++K G        N L+  
Sbjct: 76  NRMVRECSDK-VAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKG 134

Query: 90  LLMERKMVEA-DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH---KG 145
           L   +++ EA D +L+ M E G +PD+++Y IL+ G C    A++A  L   M     + 
Sbjct: 135 LCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRR 194

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P +++Y+ +I     + ++ +   LF   + +G+ PD+V +  +IDG C     +RA 
Sbjct: 195 CPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAE 254

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + ++M      P+  TYN L+HG    GK +E  ++L++M  RG+KPD         TY
Sbjct: 255 GVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDC-------YTY 307

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            +L+  LCKN     A      M+ KGI P  +TY  LI G A+    +E
Sbjct: 308 GSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSE 357



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D YTY   ++G+CK   ++EA +M + +   GL    +T+  +I      G 
Sbjct: 610 MINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGR 669

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      +   G++P   TY L+   L+ E  + E D +   M + G  P+S   N 
Sbjct: 670 KEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNA 729

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           L+      G+  +A +   ++  +       T + L+ + +       A  L E +
Sbjct: 730 LVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLPEKY 785


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 174/316 (55%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++P+ YTYG+F+ G C+ G ++ A R   +M ++G+ P  V    LIDGYC  GN
Sbjct: 538 MIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGN 597

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF+    M+ QG++P   T+++LIH L    K+ EA  +  E+ +KG+VPD  TY  
Sbjct: 598 TTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTS 657

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G+ K AF LHD+M  KGI P ++TY +LI  L K   + +A +LF+    KG
Sbjct: 658 LISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKG 717

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V ++ +I G+C + N+  AF L   M  + V PD   Y  L+ G C+ G  E+A 
Sbjct: 718 LARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKAL 777

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   GI         +   +NALI G  K  +   A +L+ +MV   ITP+  TY
Sbjct: 778 SLFLGMVEEGI--------ASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTY 829

Query: 301 FSLIEGIASVDKAAES 316
             LIE   +V    E+
Sbjct: 830 TILIEYHCTVGNIKEA 845



 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 172/306 (56%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   Y + V G+ KEGR EEA ++L  MK+ GL P    YNT+I G+C  G 
Sbjct: 468 MISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGK 527

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   S+  EM+ +G+ P   TY   IH      +M  A+    EM + GI P+ +    
Sbjct: 528 MEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTD 587

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN  KAF+    M+ +G+ P + T++ LI  LSK  ++ EA  +F   L KG
Sbjct: 588 LIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKG 647

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+  + +LI   C  G+++ AF L  +M +  ++P+ VTYN L++G C+ G++ +AR
Sbjct: 648 LVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAR 707

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D +  +G+  + +       TY+ +I G CK+     A +L   M   G+ PD   Y
Sbjct: 708 ELFDGIPEKGLARNSV-------TYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVY 760

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 761 CALIDG 766



 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 174/349 (49%), Gaps = 41/349 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD  T+   + G+ K G+L+EA  +  ++ + GLVP   TY +LI   C +G+
Sbjct: 608 MLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGD 667

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF   D+M K+GI P   TYN LI+ L    ++ +A ++   + EKG+  +S+TY+ 
Sbjct: 668 LKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYST 727

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---------------FV------ 159
           +I GYC+  N  +AF L   M   G+ P    Y +LI               F+      
Sbjct: 728 IIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG 787

Query: 160 -------------LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
                          K  ++IEA QL E+ +   + P+ V +  LI+ HCT GNI+ A  
Sbjct: 788 IASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQ 847

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L  EM +  V P+ +TY +L+HG  R G+  E   L D+M  RGIKPD        L ++
Sbjct: 848 LFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDD-------LAWS 900

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            ++    K      A +L+ +M+S+G+    N Y  LI+ +   +  +E
Sbjct: 901 VMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSE 949



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ PD+Y Y + + G C++ R  E   ML++M   GL P  V Y  LI+G+  + +
Sbjct: 293 MANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSD 352

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF  ++EM  + I     TY  LIH L     + +A+D+  EM   GI PD  TYN 
Sbjct: 353 IGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNC 412

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY +  N +KA+ L  E+  + +        +++  L     +  A++LF+  ++ G
Sbjct: 413 LIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWG 472

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV++  ++ G    G  E A  +L  M    + PD   YNT++ G C+ GK+EE +
Sbjct: 473 LKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGK 532

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M  +G+KP+         TY A I G C+  E   AE    EM+  GI P+D   
Sbjct: 533 SYLVEMIAKGLKPN-------VYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVIC 585

Query: 301 FSLIEG 306
             LI+G
Sbjct: 586 TDLIDG 591



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 44/350 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            + PD YTY + ++  C+ G++EE   +L  M+E G +P  VTY+ +I G C  G+++ A
Sbjct: 227 AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEA 286

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              +  M  +G++P    Y  LI     +++  E   ML EM   G+ PD + Y  LING
Sbjct: 287 LELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALING 346

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + +  +   AF + +EM  + I+    TY +LI  L K   + +A+ LF      G+ PD
Sbjct: 347 FVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPD 406

Query: 185 IVMFNALIDGH-----------------------------------CTNGNIERAFSLLK 209
           I  +N LI+G+                                   C  G++ RA  L +
Sbjct: 407 IQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQ 466

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM    + P+ V Y T++ G  ++G+ EEA ++L  MK +G+ PD          YN +I
Sbjct: 467 EMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPD-------VFCYNTVI 519

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD--KAAESS 317
            G CK  + +  +  L EM++KG+ P+  TY + I G       +AAE S
Sbjct: 520 IGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERS 569



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++PD  TY   + G  K   +E+A  +L ++K+  L   A     +++G C+ G+
Sbjct: 398 MTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGD 457

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+  G+ P    Y  ++  L+ E +  EA  +L  M ++G+ PD   YN 
Sbjct: 458 LTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNT 517

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+C+ G  ++  S   EMI KG++P + TY + I    +   M  A++ F   L  G
Sbjct: 518 VIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSG 577

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V+   LIDG+C +GN  +AF+  + M    V PD  T++ L+HG  + GK++EA 
Sbjct: 578 IAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAM 637

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            +  ++  +G+ PD         TY +LI  LCK  EGDL  A EL  +M  KGI P+  
Sbjct: 638 GVFSELLDKGLVPD-------VFTYTSLISNLCK--EGDLKAAFELHDDMCKKGINPNIV 688

Query: 299 TYFSLIEGIASVDKAAES 316
           TY +LI G+  + + A++
Sbjct: 689 TYNALINGLCKLGEIAKA 706



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 138/249 (55%), Gaps = 1/249 (0%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+  +S TY + ++G CK   L EA ++   MK  G+ P +  Y  LIDG C  GN E 
Sbjct: 716 KGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEK 775

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A S    MV++GI  T + +N LI       K++EA  ++++M +  I P+ +TY ILI 
Sbjct: 776 ALSLFLGMVEEGIASTPA-FNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIE 834

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +C  GN K+A  L  EM  + + P +LTYTSL+   ++  R  E   LF+  +A+G+ P
Sbjct: 835 YHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKP 894

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D + ++ ++D H   GN  +A  L+ +M    V+  +  Y  L+   C+   + E  ++L
Sbjct: 895 DDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVL 954

Query: 244 DQMKRRGIK 252
           D+++++G K
Sbjct: 955 DEVEKQGSK 963



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 132/248 (53%), Gaps = 1/248 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV PDS+ Y + + G CK G  E+A  +   M E G+  T   +N LIDG+   G 
Sbjct: 748 MKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTP-AFNALIDGFFKLGK 806

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+   ++MV   I P   TY +LI        + EA+ +  EM ++ ++P+ +TY  
Sbjct: 807 LIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTS 866

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY R G   + FSL DEM+ +GI+P  L ++ ++    K+   I+A +L ++ L++G
Sbjct: 867 LLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEG 926

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +     ++  LID  C + N+     +L E+++        T  TL+    R G+ +EA 
Sbjct: 927 VNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEAL 986

Query: 241 RLLDQMKR 248
           R+L+ M R
Sbjct: 987 RVLESMVR 994


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 184/305 (60%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++ +   Y S ++ +C EG++ +A R++E M  +G+V  A  + T++ G+C KG+
Sbjct: 311 MAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGD 370

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A ++ DEM K+G+     TY  LI+ L    ++ EA+ +L+EM +KG+  D++TY +
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G   +AF +H++M+ K + P ++TYT+L   L KQ  +  A++L     +KG
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I  +N+LI+G C  GN+E+A   + +MD   + PD  TY T++   C+  +++ A 
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAH 550

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  +GIK       PT +TYN L+ G C +   +  + LL  M+ K I P+  TY
Sbjct: 551 SLLQEMLDKGIK-------PTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 301 FSLIE 305
            SL++
Sbjct: 604 NSLMK 608



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 166/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+  D  TY + ++G+C+ G L+EA R+L++M++ GL   AVTY  LIDGYC  G 
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   ++MV++ + P   TY  L   L  +  +  A+++L EM  KG+  +  TYN 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ GN ++A     +M   G++P + TYT++I  L +   +  A  L +  L KG
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV +N L++G C +G +E    LL+ M    +HP+  TYN+LM   C +  ++   
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  + + P+         TYN LI+G CK +    A     EM+ KG     ++Y
Sbjct: 621 EIYKGMLSQEVVPNEN-------TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY 673

Query: 301 FSLI 304
            +LI
Sbjct: 674 NALI 677



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 156/300 (52%), Gaps = 7/300 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TYG  V G C    LE A ++L +M   GL    V Y ++I   C++G +  A   
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            ++MV  G++  A+ +  ++     +  +  A +   EM ++G+  D +TY  LING CR
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K+A  +  EM  KG+    +TYT LI    K  +M EA  +    + K + P++V 
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + AL DG C  G++  A  LL EM    +  +  TYN+L++G C+ G +E+A R +  M 
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD 522

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G+KPD         TY  +I  LC+++E D A  LL+EM+ KGI P   TY  L+ G 
Sbjct: 523 EAGLKPD-------VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 155/304 (50%), Gaps = 11/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V P+  TY +   G+CK+G +  A+ +L +M   GL     TYN+LI+G C  GN
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     +M + G+ P   TY  +I  L   +++  A  +L+EM +KGI P  +TYN+
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNV 570

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L + M+ K I P   TY SL+     +  M    ++++  L++ 
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   +N LI GHC   N++ A     EM          +YN L+    ++ K  EAR
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690

Query: 241 RLLDQMKRRGI--KPDHISFNPTRLTYNALIQGLCKNQEGDLA--EELLREMVSKGITPD 296
           RL ++M++  +  +PD  +F    L++N        N E  LA  +EL+   + K I   
Sbjct: 691 RLFEKMRKERLTAEPDVYNFY-IDLSFNE------DNLESTLALCDELVEVTLVKSIADT 743

Query: 297 DNTY 300
           D+ +
Sbjct: 744 DDDF 747



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 68/293 (23%)

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           GI P+  + N ++  L ++    EA  + +E+ EK    ++ +YNIL+   C  G  K A
Sbjct: 221 GISPSPESCNAVLCRLPLD----EAVQLFQELPEK----NTCSYNILLKALCTAGRIKDA 272

Query: 135 FSLHDE------------MIH--------------------KGIQPTMLTYTSLIFVLSK 162
             L DE            M+H                    +G++   + YTS+I +L  
Sbjct: 273 HQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCD 332

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + ++ +A ++ E+ +  G++ D  +F  ++ G C  G++  A +   EM +  +  D VT
Sbjct: 333 EGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVT 392

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------------------------ 258
           Y  L++G CR G+++EA R+L +M+ +G+  D +++                        
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 259 ----NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                P  +TY AL  GLCK  +   A ELL EM SKG+  +  TY SLI G+
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           EA QLF+    K    +   +N L+   CT G I+ A  L    D M   PD VTY  ++
Sbjct: 240 EAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLF---DEMASPPDVVTYGIMV 292

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           HG C   ++E A +LL +M  RG++      NP  + Y ++I  LC   +   A  ++ +
Sbjct: 293 HGYCTLSELETAIKLLSEMAARGLE-----LNP--VAYTSVIALLCDEGQVSDAVRVVED 345

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           MV  G+  D   + +++ G       A + N
Sbjct: 346 MVMHGVVLDAAVFTTVMSGFCRKGDLAAARN 376


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 184/305 (60%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++ +   Y S ++ +C EG++ +A R++E M  +G+V  A  + T++ G+C KG+
Sbjct: 311 MAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGD 370

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A ++ DEM K+G+     TY  LI+ L    ++ EA+ +L+EM +KG+  D++TY +
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G   +AF +H++M+ K + P ++TYT+L   L KQ  +  A++L     +KG
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I  +N+LI+G C  GN+E+A   + +MD   + PD  TY T++   C+  +++ A 
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAH 550

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  +GIK       PT +TYN L+ G C +   +  + LL  M+ K I P+  TY
Sbjct: 551 SLLQEMLDKGIK-------PTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 301 FSLIE 305
            SL++
Sbjct: 604 NSLMK 608



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+  D  TY + ++G+C+ G L+EA R+L++M++ GL   AVTY  LIDGYC  G 
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   ++MV++ + P   TY  L   L  +  +  A+++L EM  KG+  +  TYN 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ GN ++A     +M   G++P + TYT++I  L +   +  A  L +  L KG
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV +N L++G C +G +E    LL+ M    +HP+  TYN+LM   C +  ++   
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  + + P+         TYN LI+G CK +    A     EM+ KG     ++Y
Sbjct: 621 EIYKGMLSQEVVPNEN-------TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY 673

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +    K  E+
Sbjct: 674 NALIRLLNKKKKFTEA 689



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 156/300 (52%), Gaps = 7/300 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TYG  V G C    LE A ++L +M   GL    V Y ++I   C++G +  A   
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            ++MV  G++  A+ +  ++     +  +  A +   EM ++G+  D +TY  LING CR
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K+A  +  EM  KG+    +TYT LI    K  +M EA  +    + K + P++V 
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + AL DG C  G++  A  LL EM    +  +  TYN+L++G C+ G +E+A R +  M 
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD 522

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G+KPD         TY  +I  LC+++E D A  LL+EM+ KGI P   TY  L+ G 
Sbjct: 523 EAGLKPD-------VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 154/304 (50%), Gaps = 11/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V P+  TY +   G+CK+G +  A+ +L +M   GL     TYN+LI+G C  GN
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     +M + G+ P   TY  +I  L   +++  A  +L+EM +KGI P  +TYN+
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNV 570

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L + M+ K I P   TY SL+     +  M    ++++  L++ 
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   +N LI GHC   N++ A     EM          +YN L+    ++ K  EAR
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690

Query: 241 RLLDQMK--RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA--EELLREMVSKGITPD 296
           RL ++M+  R   +PD  +F    L++N        N E  LA  +EL+   + K I   
Sbjct: 691 RLFEKMRKERLTAEPDVYNFY-IDLSFNE------DNLESTLALCDELVEVTLVKSIADT 743

Query: 297 DNTY 300
           D+ +
Sbjct: 744 DDDF 747



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 18/244 (7%)

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           + GI P+  + N ++  L ++    EA  + +E+ EK    ++ +YNIL+   C  G  K
Sbjct: 219 QYGISPSPESCNAVLCRLPLD----EAVQLFQELPEK----NTCSYNILLKALCTAGRIK 270

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A  L DEM      P ++TY  ++      + +  A +L     A+G+  + V + ++I
Sbjct: 271 DAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVI 327

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
              C  G +  A  ++++M    V  D   + T+M G CR+G +  AR   D+M++RG+ 
Sbjct: 328 ALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLA 387

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            D +       TY ALI GLC+  E   AE +L+EM  KG+  D  TY  LI+G   V K
Sbjct: 388 ADGV-------TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 313 AAES 316
             E+
Sbjct: 441 MTEA 444



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           EA QLF+    K    +   +N L+   CT G I+ A  L    D M   PD VTY  ++
Sbjct: 240 EAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLF---DEMASPPDVVTYGIMV 292

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           HG C   ++E A +LL +M  RG++      NP  + Y ++I  LC   +   A  ++ +
Sbjct: 293 HGYCTLSELETAIKLLSEMAARGLE-----LNP--VAYTSVIALLCDEGQVSDAVRVVED 345

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           MV  G+  D   + +++ G       A + N
Sbjct: 346 MVMHGVVLDAAVFTTVMSGFCRKGDLAAARN 376


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 31/331 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRL---EEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           MK  GV P+  TY + + G CK GR+    +A  +L++M   G+ P  VTYN LIDG+C 
Sbjct: 181 MKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCK 240

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
             N+  A     EM +QG+ P   TYN+LI+ L  + K+ EA  +  +M    + P+ +T
Sbjct: 241 DENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVT 300

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N+LING+C+     +A +L ++M  +G+ P  +TYT+LI    K  RM +A  L+   +
Sbjct: 301 HNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMI 360

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ P++  +N LI G C  G+++ A SL+ EM   K+  D VTYN L+   C++G+  
Sbjct: 361 DRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESR 420

Query: 238 EARRLLDQMKRRGIKPDHISFNP------------------TRL----------TYNALI 269
           +A +LLD+M  +G+ P H+++N                   TR+          T+N LI
Sbjct: 421 KAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLI 480

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +G C     + A  LL EM+ +G+ P+  TY
Sbjct: 481 KGFCLKGRLEDANGLLNEMLERGLVPNRTTY 511



 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 172/309 (55%), Gaps = 10/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R ++ +  ++   V+G+CK G+L  A  ++E MK  G+ P  +TYNTLIDGYC  G 
Sbjct: 146 MIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGR 205

Query: 61  LEMAF---SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +   +   +   EMV +GI P   TYN+LI     +  +  A  +  EM  +G+ P+ +T
Sbjct: 206 IGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVT 265

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YNILING C  G   +A +L D+M+   ++P ++T+  LI    K   + EA  LF +  
Sbjct: 266 YNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDME 325

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ P+ + +  LID +C +G +E AF+L   M    + P+  TYN L+ G CR+G V+
Sbjct: 326 KQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVK 385

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            AR L+++M  + +  D +       TYN LI  LCK  E   A +LL EM  KG+ P  
Sbjct: 386 AARSLMNEMVSKKLSADVV-------TYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSH 438

Query: 298 NTYFSLIEG 306
            TY +L++G
Sbjct: 439 VTYNTLMDG 447



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 157/301 (52%), Gaps = 33/301 (10%)

Query: 40  GLVPTAVTYNTLIDGYCNKG-NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE 98
           G   + ++ N L+ G   +  N +M F +R EM+K+ I     ++N++++ L    K+  
Sbjct: 115 GFKLSLISCNPLLSGLVKESENGDMEFVYR-EMIKRKIELNVISFNIVVNGLCKVGKLNR 173

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYC---RCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           A D++++M   G+ P+ ITYN LI+GYC   R G   KA ++  EM+ KGI P  +TY  
Sbjct: 174 AGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNI 233

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           LI    K   +  A ++F     +G+ P++V +N LI+G C++G ++ A +L  +M    
Sbjct: 234 LIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSD 293

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------------- 259
           + P+ VT+N L++G C+   V EA  L + M+++G+ P+ +++                 
Sbjct: 294 LEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAF 353

Query: 260 ------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                       P   TYN LI GLC+  +   A  L+ EMVSK ++ D  TY  LI+ +
Sbjct: 354 ALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSL 413

Query: 308 A 308
            
Sbjct: 414 C 414



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 122/226 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  ++P+  T+   ++G CK   + EA  +   M++ G+ P A+TY TLID YC  G 
Sbjct: 289 MVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGR 348

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF+  + M+ +GI P  STYN LI  L  +  +  A  ++ EM  K +  D +TYNI
Sbjct: 349 MEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNI 408

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G ++KA  L DEM  KG+ P+ +TY +L+    ++  +  A  +      KG
Sbjct: 409 LIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKG 468

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
              ++V  N LI G C  G +E A  LL EM    + P+  TY  +
Sbjct: 469 KQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 126/254 (49%), Gaps = 31/254 (12%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           ++L+   +   K++   +  K  G+ G     I+ N L++G  +         ++ EMI 
Sbjct: 89  DMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIK 148

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           + I+  ++++  ++  L K  ++  A  + E+    G+ P+++ +N LIDG+C  G I +
Sbjct: 149 RKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGK 208

Query: 204 AF---SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN- 259
            +   ++LKEM    + P+EVTYN L+ G C+   V  A R+  +M+R+G++P+ +++N 
Sbjct: 209 MYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNI 268

Query: 260 ---------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
                                      P  +T+N LI G CKN+  + A  L  +M  +G
Sbjct: 269 LINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQG 328

Query: 293 ITPDDNTYFSLIEG 306
           + P+  TY +LI+ 
Sbjct: 329 VDPNAMTYTTLIDA 342



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 16/148 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ +  D  TY   +  +CK+G   +A ++L++M E GL P+ VTYNTL+DGYC +GN
Sbjct: 394 MVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGN 453

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A   R  M ++G      T+N+LI    ++ ++ +A+ +L EM E+G+VP+  TY I
Sbjct: 454 LRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEI 513

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                           + +EM+ KG  P
Sbjct: 514 ----------------IKEEMMEKGFVP 525



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 10/206 (4%)

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           +SI  ++L+  + R     + F         G + ++++   L+  L K++   + + ++
Sbjct: 84  NSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVY 143

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-- 231
              + + +  +++ FN +++G C  G + RA  ++++M    V P+ +TYNTL+ G C  
Sbjct: 144 REMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKM 203

Query: 232 -RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
            R GK+ +A  +L +M  +GI P+ +       TYN LI G CK++    A  +  EM  
Sbjct: 204 GRIGKMYKADAILKEMVAKGICPNEV-------TYNILIDGFCKDENVSGAMRVFGEMQR 256

Query: 291 KGITPDDNTYFSLIEGIASVDKAAES 316
           +G+ P+  TY  LI G+ S  K  E+
Sbjct: 257 QGLRPNVVTYNILINGLCSDGKVDEA 282


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 184/305 (60%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++ +   Y S ++ +C EG++ +A R++E M  +G+V  A  + T++ G+C KG+
Sbjct: 311 MAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGD 370

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A ++ DEM K+G+     TY  LI+ L    ++ EA+ +L+EM +KG+  D++TY +
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G   +AF +H++M+ K + P ++TYT+L   L KQ  +  A++L     +KG
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I  +N+LI+G C  GN+E+A   + +MD   + PD  TY T++   C+  +++ A 
Sbjct: 491 LELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAH 550

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  +GIK       PT +TYN L+ G C +   +  + LL  M+ K I P+  TY
Sbjct: 551 SLLQEMLDKGIK-------PTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTY 603

Query: 301 FSLIE 305
            SL++
Sbjct: 604 NSLMK 608



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+  D  TY + ++G+C+ G L+EA R+L++M++ GL   AVTY  LIDGYC  G 
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   ++MV++ + P   TY  L   L  +  +  A+++L EM  KG+  +  TYN 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ GN ++A     +M   G++P + TYT++I  L +   +  A  L +  L KG
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV +N L++G C +G +E    LL+ M    +HP+  TYN+LM   C +  ++   
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  + + P+         TYN LI+G CK +    A     EM+ KG     ++Y
Sbjct: 621 EIYKGMLSQEVVPNEN-------TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY 673

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +    K  E+
Sbjct: 674 NALIRLLNKKKKFTEA 689



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 156/300 (52%), Gaps = 7/300 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TYG  V G C    LE A ++L +M   GL    V Y ++I   C++G +  A   
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            ++MV  G++  A+ +  ++     +  +  A +   EM ++G+  D +TY  LING CR
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K+A  +  EM  KG+    +TYT LI    K  +M EA  +    + K + P++V 
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + AL DG C  G++  A  LL EM    +  +  TYN+L++G C+ G +E+A R +  M 
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD 522

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G+KPD         TY  +I  LC+++E D A  LL+EM+ KGI P   TY  L+ G 
Sbjct: 523 EAGLKPD-------VYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 154/304 (50%), Gaps = 11/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V P+  TY +   G+CK+G +  A+ +L +M   GL     TYN+LI+G C  GN
Sbjct: 451 MVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGN 510

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     +M + G+ P   TY  +I  L   +++  A  +L+EM +KGI P  +TYN+
Sbjct: 511 LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNV 570

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L + M+ K I P   TY SL+     +  M    ++++  L++ 
Sbjct: 571 LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE 630

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   +N LI GHC   N++ A     EM          +YN L+    ++ K  EAR
Sbjct: 631 VVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEAR 690

Query: 241 RLLDQMK--RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA--EELLREMVSKGITPD 296
           RL ++M+  R   +PD  +F    L++N        N E  LA  +EL+   + K I   
Sbjct: 691 RLFEKMRKDRLTAEPDVYNFY-IDLSFNE------DNLESTLALCDELVEVTLVKSIADT 743

Query: 297 DNTY 300
           D+ +
Sbjct: 744 DDDF 747



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 18/244 (7%)

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           + GI P+  + N ++  L ++    EA  + +E+ EK    ++ +YNIL+   C  G  K
Sbjct: 219 QYGISPSPESCNAVLCRLPLD----EAVQLFQELPEK----NTCSYNILLKALCTAGRIK 270

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A  L DEM      P ++TY  ++      + +  A +L     A+G+  + V + ++I
Sbjct: 271 DAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVI 327

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
              C  G +  A  ++++M    V  D   + T+M G CR+G +  AR   D+M++RG+ 
Sbjct: 328 ALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLA 387

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            D +       TY ALI GLC+  E   AE +L+EM  KG+  D  TY  LI+G   V K
Sbjct: 388 ADGV-------TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 313 AAES 316
             E+
Sbjct: 441 MTEA 444



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           EA QLF+    K    +   +N L+   CT G I+ A  L    D M   PD VTY  ++
Sbjct: 240 EAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQLF---DEMASPPDVVTYGIMV 292

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           HG C   ++E A +LL +M  RG++      NP  + Y ++I  LC   +   A  ++ +
Sbjct: 293 HGYCTLSELETAIKLLSEMAARGLE-----LNP--VAYTSVIALLCDEGQVSDAVRVVED 345

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           MV  G+  D   + +++ G       A + N
Sbjct: 346 MVMHGVVLDAAVFTTVMSGFCRKGDLAAARN 376


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 172/307 (56%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G+ P+ +TY S + G+C   R  EAS ML +M    ++P  VT++ LI+ +C +GN
Sbjct: 288 MKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGN 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P   TY+ L++   ++ ++VEA  +   M  KG  PD  +YNI
Sbjct: 348 VFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNI 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A  L +EMIH+G+ P +++Y +LI  L +  R+ EA  LF+N L  G
Sbjct: 408 LINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+  ++ L+DG C  G + +AF L + M    + P+ V YN L+   C+   ++EAR
Sbjct: 468 NLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEAR 527

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  ++  +G++P+          Y  +I GLCK    D A E  R M   G  P++ +Y
Sbjct: 528 KLFSELFVQGLQPN-------VQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSY 580

Query: 301 FSLIEGI 307
             +I G 
Sbjct: 581 NVIIRGF 587



 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 169/319 (52%), Gaps = 10/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TY + +  +CK+ R+ EA  +   MK  G+ P   TYN+LI G CN   
Sbjct: 253 MGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSR 312

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  +EM+   IMP   T++LLI+    E  + EA  +LK M E G+ P+ +TY+ 
Sbjct: 313 WREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSS 372

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGY       +A  L D MI KG +P + +Y  LI    K  R+ EA QLF   + +G
Sbjct: 373 LMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 432

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N LIDG C  G +  A  L K M      PD  TY+ L+ G C+QG + +A 
Sbjct: 433 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 492

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL   M+   +KP+ +        YN LI  +CK++    A +L  E+  +G+ P+   Y
Sbjct: 493 RLFRAMQSTYLKPNMV-------MYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIY 545

Query: 301 FSLIEGIAS---VDKAAES 316
            ++I G+     +D+A E+
Sbjct: 546 TTIINGLCKEGLLDEALEA 564



 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 174/318 (54%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD+YT    ++   +  R++    +L ++ + GL  T VT+NTLI+G C  G 
Sbjct: 148 MELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGK 207

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+MV +G  P   TY  +I+ L    + V A  + ++MGE G  PD +TY+ 
Sbjct: 208 FGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYST 267

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +A  +   M  KGI P + TY SLI  L   +R  EA  +    ++  
Sbjct: 268 IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN 327

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+IV F+ LI+  C  GN+  A  +LK M  M V P+ VTY++LM+G   Q +V EAR
Sbjct: 328 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEAR 387

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D M  +G KPD  S       YN LI G CK +    A++L  EM+ +G+TPD  +Y
Sbjct: 388 KLFDVMITKGCKPDVFS-------YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSY 440

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI+G+  + +  E+ +
Sbjct: 441 NTLIDGLCQLGRLREAHD 458



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+P+  TY S ++G   +  + EA ++ + M   G  P   +YN LI+GYC    
Sbjct: 358 MTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 417

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM+ QG+ P   +YN LI  L    ++ EA D+ K M   G +PD  TY+I
Sbjct: 418 IGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSI 477

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G   KAF L   M    ++P M+ Y  LI  + K   + EA +LF     +G
Sbjct: 478 LLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQG 537

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++ ++  +I+G C  G ++ A    + M+     P+E +YN ++ G  +      A 
Sbjct: 538 LQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAV 597

Query: 241 RLLDQMKRRGIKPD 254
           +L+ +M+ +G   D
Sbjct: 598 QLIGEMREKGFVAD 611



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 87/185 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  +Y + + G+C+ GRL EA  + + M  NG +P   TY+ L+DG+C +G 
Sbjct: 428 MIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGY 487

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF     M    + P    YN+LI  +   R + EA  +  E+  +G+ P+   Y  
Sbjct: 488 LAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTT 547

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A      M   G  P   +Y  +I    +      A QL      KG
Sbjct: 548 IINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKG 607

Query: 181 MLPDI 185
            + D+
Sbjct: 608 FVADV 612



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 43/259 (16%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML-KEMGEKGIVPDSITY 118
           N++ A ++ + M+ +   P    +N L+  ++  R   +A   L K+M   G+ PD+ T 
Sbjct: 101 NIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTL 160

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           ++LIN + +       FS+  ++I  G+Q T                             
Sbjct: 161 HMLINCFFQLQRVDLGFSVLAKIIKLGLQLT----------------------------- 191

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
                 IV FN LI+G C  G   +A  L  +M      PD  TY T+++G C+ G+   
Sbjct: 192 ------IVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVA 245

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L  +M   G +PD +       TY+ +I  LCK++  + A ++   M +KGI+P+  
Sbjct: 246 AAGLFRKMGEAGCQPDVV-------TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIF 298

Query: 299 TYFSLIEGIASVDKAAESS 317
           TY SLI+G+ +  +  E+S
Sbjct: 299 TYNSLIQGLCNFSRWREAS 317



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 74/152 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY   + G CK+G L +A R+   M+   L P  V YN LID  C   N
Sbjct: 463 MLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRN 522

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     E+  QG+ P    Y  +I+ L  E  + EA +  + M E G  P+  +YN+
Sbjct: 523 LKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNV 582

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +I G+ +  +  +A  L  EM  KG    + T
Sbjct: 583 IIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 179/342 (52%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G+ PD  TY S ++G CK G L++A  +   +K  GL PT +TYN LIDGYC  G+
Sbjct: 361 MRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGD 420

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM----VEADDML------------- 103
           LE A   ++EM ++  +P   TY +L++   M R +    +  D+ML             
Sbjct: 421 LEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNT 480

Query: 104 ------------------KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                             +EM  +GI  D++TYN+LI+G C+ G+ K A+ L  +M+  G
Sbjct: 481 RISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDG 540

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++   +TYT LI    ++ R+IEA  +F+  +A G+ P +V +   I  +C  GN+  A+
Sbjct: 541 LRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAY 600

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
              ++M    V P+EVTYN LMH  CR G+ E A +   +M  RG+ P+       + TY
Sbjct: 601 GWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPN-------KYTY 653

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             LI G CK      A  L  EM  KGI PD  T+ +L +G 
Sbjct: 654 TLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGF 695



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 164/334 (49%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P   TY + + G+ K G  E A    ++M+  GL+P  +TYN+LI+GYC  GN
Sbjct: 326 MENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGN 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     ++ + G+ PT  TYN+LI        +  A  + +EM E+  +PD  TY I
Sbjct: 386 LKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTI 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C   N        DEM+ KG++P    Y + I        +  A QL E  + +G
Sbjct: 446 LMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRG 505

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V +N LIDG C  G+++ A+ L  +M    +  D VTY  L+H  C +G++ EA+
Sbjct: 506 ISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAK 565

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            + D M   G+ P  +++                             P  +TYN L+  L
Sbjct: 566 NIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHAL 625

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C+    + A +   EM+ +G+ P+  TY  LI+G
Sbjct: 626 CRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDG 659



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/354 (32%), Positives = 159/354 (44%), Gaps = 43/354 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M   GV+P  +TY + +   CK GR+++A  +L+ M  +  G +P  VTYN +I+G   K
Sbjct: 220 MLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARK 279

Query: 59  GNLEMAFSFRD----------------------------------EMVKQGIMPTASTYN 84
           G LE A    D                                  EM  +GI+PT  TYN
Sbjct: 280 GELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYN 339

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            LI  L        A     EM  KG++PD ITYN LINGYC+ GN K+A  L  ++   
Sbjct: 340 TLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRA 399

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+ PT+LTY  LI    +   +  A +L E    +  LPD+  +  L++G C   N+   
Sbjct: 400 GLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMV 459

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
                EM    + PD   YNT +      G +  A +L ++M  RGI  D +       T
Sbjct: 460 RIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTV-------T 512

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           YN LI GLCK      A  L  +MV+ G+  D  TY  LI       +  E+ N
Sbjct: 513 YNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKN 566



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 128/284 (45%), Gaps = 49/284 (17%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDM---LKEMGEKGIVPDSITYNILINGYC 126
           EM + G+ P     N ++  L   R     DDM     +M + G+ P   TYN L++ +C
Sbjct: 184 EMARHGVAPFVKECNCVLRVL---RDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFC 240

Query: 127 RCGNAKKAFSLHDEMIHK--GIQPTMLTYTSLIFVLSKQNRMIEADQLFE---------- 174
           + G   +A +L  +M  +  G  P  +TY  +I  L+++  + +A QL +          
Sbjct: 241 KAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASA 300

Query: 175 -------------NFLAK-----------GMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
                        +F+ K           G++P +V +N LIDG    GN E A     E
Sbjct: 301 FTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDE 360

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M    + PD +TYN+L++G C+ G +++A  L   +KR G+        PT LTYN LI 
Sbjct: 361 MRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGL-------GPTVLTYNILID 413

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
           G C+  + + A  L  EM  +   PD  TY  L+ G   V   A
Sbjct: 414 GYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLA 457



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 10/185 (5%)

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
           + +  S   EM   G+ P +     ++ VL    R  +   ++ + L  G+ P I  +N 
Sbjct: 175 STQCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNT 234

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVH--PDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           L+D  C  G +++A +LLK+M+       P++VTYN +++G  R+G++E+A +L+D M+ 
Sbjct: 235 LLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMR- 293

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                  +S   +  TYN LI GL      + A  LL EM ++GI P   TY +LI+G+ 
Sbjct: 294 -------LSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLF 346

Query: 309 SVDKA 313
               A
Sbjct: 347 KTGNA 351


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 177/329 (53%), Gaps = 28/329 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD   +   +  +CKE ++ EA  +  ++ + GL PT V++NTLI+GYC  GNL+  
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M++  + P   TY++LI+ L  E ++ +A+ +  EM ++G+VP+ +T+  LING
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G A     ++ +M+ KG++P ++TY +LI  L K   + EA +L      +G+ PD
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G++E A  + KEM +  +  D V +  L+ G CR+G+V EA R L 
Sbjct: 400 KFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLR 459

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M   GIKPD  ++                             P  +TYN L+ GLCK  
Sbjct: 460 EMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQG 519

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +   A  LL  M++ G+ PDD TY  L+E
Sbjct: 520 QMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 174/321 (54%), Gaps = 11/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++RG    +  +   ++     G   +A +    ++++ L     +   L D       
Sbjct: 146 LEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNL 205

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++F +E++  G  P    +N+L+H L  E K+ EA  +  E+G++G+ P  +++N 
Sbjct: 206 TSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNT 265

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ GN  + F L   M+   + P + TY+ LI  L K+ ++ +A++LF     +G
Sbjct: 266 LINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRG 325

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V F  LI+GHC  G  +    + ++M R  V PD +TYNTL++G C+ G + EA+
Sbjct: 326 LVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAK 385

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
           +L+ +M +RG+KPD       + TY  LI G CK  EGDL  A E+ +EMV +GI  D+ 
Sbjct: 386 KLVIEMTQRGLKPD-------KFTYTMLIDGCCK--EGDLESALEIRKEMVKEGIELDNV 436

Query: 299 TYFSLIEGIASVDKAAESSNS 319
            + +LI G     +  E+  +
Sbjct: 437 AFTALISGFCREGQVIEAERT 457



 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 115/193 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+PD  TY + ++G+CK G L EA +++ +M + GL P   TY  LIDG C +G+
Sbjct: 356 MLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGD 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A   R EMVK+GI      +  LI     E +++EA+  L+EM E GI PD  TY +
Sbjct: 416 LESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTM 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+ G+ K  F L  EM   G  P ++TY  L+  L KQ +M  A+ L +  L  G
Sbjct: 476 VIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLG 535

Query: 181 MLPDIVMFNALID 193
           ++PD + +N L++
Sbjct: 536 VVPDDITYNILLE 548



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 123/227 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  T+ + ++G C  GR +    + +QM   G+ P  +TYNTLI+G C  G+
Sbjct: 321 MCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGD 380

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM ++G+ P   TY +LI     E  +  A ++ KEM ++GI  D++ +  
Sbjct: 381 LREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTA 440

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+CR G   +A     EM+  GI+P   TYT +I    K+  +    +L +     G
Sbjct: 441 LISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDG 500

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            +P +V +N L++G C  G ++ A  LL  M  + V PD++TYN L+
Sbjct: 501 HVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILL 547



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 56/95 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++PD  TY   + G CK+G ++   ++L++M+ +G VP  VTYN L++G C +G 
Sbjct: 461 MLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQ 520

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           ++ A    D M+  G++P   TYN+L+   L   K
Sbjct: 521 MKNANMLLDAMLNLGVVPDDITYNILLERTLQAWK 555


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 170/308 (55%), Gaps = 13/308 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P      + ++G+ K+   +    +   M    L PT VTYN L+D  C +G++  A
Sbjct: 146 GAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRA 205

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EMVK+GI PT   Y  LIH L  E K++EA+ M ++M + G+ P+  TYN+L++G
Sbjct: 206 KSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDG 265

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+  N K+A  L+  M+  G+QP ++T+  LI  L K   ++ A + F      G++P+
Sbjct: 266 YCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPN 325

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V+FN+LIDG+   GN   A  LL EM++ K+ PD  TY+ L+   CR G VEEA  +L 
Sbjct: 326 VVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILK 385

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCK--NQEGDL----AEELLREMVSKGITPDDN 298
           +M++ G+  + +        YN+LI G CK  N E  L    A +   +M   G+ PD  
Sbjct: 386 RMEKEGVPANSV-------VYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDAL 438

Query: 299 TYFSLIEG 306
            Y  +++G
Sbjct: 439 AYAVMLQG 446



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 141/271 (52%), Gaps = 6/271 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P    Y + + G+C E +L EA  M  QMK++G+ P   TYN L+DGYC   N
Sbjct: 212 MVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTAN 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M+  G+ P   T+ +LI  L   R+++ A     +M + G+VP+ + +N 
Sbjct: 272 VKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNS 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY + GN  +A  L  EM    I P + TY+ LI    +   + EAD + +    +G
Sbjct: 332 LIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEG 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK------EMDRMKVHPDEVTYNTLMHGRCRQG 234
           +  + V++N+LIDG+C  GN+E+A  + K      +M R  + PD + Y  ++ G     
Sbjct: 392 VPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAK 451

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + +   L   M + GI P+ ++    R  Y
Sbjct: 452 HMADVMMLHADMIKMGIVPNEVTSQVVRRGY 482



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 13/305 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR + P   TY   V   C++G +  A  ++ +M + G+ PT V Y TLI G C++  
Sbjct: 177 MVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESK 236

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S   +M   G+ P   TYN+L+        + +A  + + M + G+ P+ +T+ I
Sbjct: 237 LMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGI 296

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+      A     +M   G+ P ++ + SLI   SK     EA  L        
Sbjct: 297 LIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFK 356

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE--- 237
           + PD+  ++ LI   C  G +E A  +LK M++  V  + V YN+L+ G C++G +E   
Sbjct: 357 ISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKAL 416

Query: 238 ---EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
              +A +    M+R G++PD        L Y  ++QG    +       L  +M+  GI 
Sbjct: 417 EIFKATKFFSDMRRNGLRPD-------ALAYAVMLQGHLNAKHMADVMMLHADMIKMGIV 469

Query: 295 PDDNT 299
           P++ T
Sbjct: 470 PNEVT 474



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 145/286 (50%), Gaps = 12/286 (4%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           L Q++ +   P+   +  LI  +   G ++ A       +K G  P     N L++ LL 
Sbjct: 109 LSQLRGSKFNPS--VFGVLIIAFSEVGLVDEALRV---YLKVGAFPAVQACNALLNGLLK 163

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +       ++   M  + + P  +TYN+L++  CR G+  +A SL  EM+ KGI+PT++ 
Sbjct: 164 KSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVI 223

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           YT+LI  L  +++++EA+ +F      G+ P++  +N L+DG+C   N+++A  L + M 
Sbjct: 224 YTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGML 283

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              + P+ VT+  L+   C+  ++  ARR   QM + G+ P+ + F       N+LI G 
Sbjct: 284 DDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVF-------NSLIDGY 336

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            K      A +LL EM    I+PD  TY  LI+    +    E+ +
Sbjct: 337 SKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADD 382


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 179/309 (57%), Gaps = 10/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R +QP+  T+  F++G+CK G+L +A  ++E +K  G  P  VTYNTLIDG+C KG+
Sbjct: 191 MIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGS 250

Query: 61  ---LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
              +  A +   EM+   I P   T+N LI     +  ++ A +  +EM  +G+ P+ +T
Sbjct: 251 AGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVT 310

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LING    G   +A +L D+M+  G++P ++T+ +LI    K+  + EA +LF++  
Sbjct: 311 YNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIA 370

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            + ++P+ + FN +ID  C  G +E  F+L   M    + P+  TYN L+ G CR   V 
Sbjct: 371 EQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVR 430

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A++LL++M+   +K D +       TYN LI G CK+ E   AE+LL EM++ G+ P+ 
Sbjct: 431 AAKKLLNEMENYELKADVV-------TYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNH 483

Query: 298 NTYFSLIEG 306
            TY +L++G
Sbjct: 484 VTYNTLMDG 492



 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 170/300 (56%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + P+  T+ + + G CK+  +  A    E+M+  GL P  VTYN+LI+G  N G 
Sbjct: 264 MLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGK 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +  D+MV  G+ P   T+N LI+    ++ + EA  +  ++ E+ +VP++IT+N 
Sbjct: 324 LDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G  ++ F+LH+ M+ +GI P + TY  LI  L +   +  A +L        
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+V +N LI G C +G   +A  LL EM  + V P+ VTYNTLM G C +G ++ A 
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAAL 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  QM++ G + + +       TYN LI+G CK  + + A  LL EM+ KG+ P+  TY
Sbjct: 504 KVRTQMEKEGKRANVV-------TYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTY 556



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 159/280 (56%), Gaps = 2/280 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+  TY S ++G+   G+L+EA  + ++M   GL P  VT+N LI+G+C K  
Sbjct: 299 MQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKM 358

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D++ +Q ++P A T+N +I        M E   +   M ++GI P+  TYN 
Sbjct: 359 IKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNC 418

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G CR  N + A  L +EM +  ++  ++TY  LI    K     +A++L    L  G
Sbjct: 419 LIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVG 478

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +N L+DG+C  GN++ A  +  +M++     + VTYN L+ G C+ GK+E+A 
Sbjct: 479 VKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDAN 538

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           RLL++M  +G+ P+  +++  RL    L +G   + EG L
Sbjct: 539 RLLNEMLEKGLNPNRTTYDVVRL--EMLEKGFIPDIEGHL 576



 Score =  154 bits (390), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 167/314 (53%), Gaps = 35/314 (11%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL--EMAFSFRDEMVKQGIMPTASTY 83
           +  A  +  ++++ G   +  + N L+     KGN   EM + ++ EM+K+ I P  +T+
Sbjct: 146 IHSACEVFRRVQDYGFKLSLNSCNPLLSALV-KGNETGEMQYVYK-EMIKRRIQPNLTTF 203

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF---SLHDE 140
           N+ I+ L    K+ +A+D+++++   G  P+ +TYN LI+G+C+ G+A K +   ++  E
Sbjct: 204 NIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKE 263

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+   I P  +T+ +LI    K   ++ A   FE    +G+ P+IV +N+LI+G   NG 
Sbjct: 264 MLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGK 323

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN- 259
           ++ A +L  +M  + + P+ VT+N L++G C++  ++EAR+L D +  + + P+ I+FN 
Sbjct: 324 LDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383

Query: 260 ---------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
                                      P   TYN LI GLC+NQ    A++LL EM +  
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 293 ITPDDNTYFSLIEG 306
           +  D  TY  LI G
Sbjct: 444 LKADVVTYNILIGG 457



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 128/236 (54%), Gaps = 10/236 (4%)

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G   + ++ N L+  L+   +  E   + KEM ++ I P+  T+NI ING C+ G   KA
Sbjct: 160 GFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKA 219

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQ---NRMIEADQLFENFLAKGMLPDIVMFNAL 191
             + +++   G  P ++TY +LI    K+    +M  AD + +  LA  + P+ + FN L
Sbjct: 220 EDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTL 279

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           IDG C + N+  A +  +EM R  + P+ VTYN+L++G    GK++EA  L D+M   G+
Sbjct: 280 IDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGL 339

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           KP+ +       T+NALI G CK +    A +L  ++  + + P+  T+ ++I+  
Sbjct: 340 KPNIV-------TFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAF 388



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 77/136 (56%), Gaps = 14/136 (10%)

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           + +AL+ G+ T G ++  +   KEM + ++ P+  T+N  ++G C+ GK+ +A  +++ +
Sbjct: 171 LLSALVKGNET-GEMQYVY---KEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDI 226

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKN-QEGDL--AEELLREMVSKGITPDDNTYFSL 303
           K  G       F+P  +TYN LI G CK    G +  A+ +L+EM++  I P++ T+ +L
Sbjct: 227 KAWG-------FSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTL 279

Query: 304 IEGIASVDKAAESSNS 319
           I+G    +    + N+
Sbjct: 280 IDGFCKDENVLAAKNA 295


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 185/316 (58%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  PD  TY   V+G+CKEGRL+EA + L  M  +G  P  +T+N ++   C+ G 
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++G  P+  T+N+LI+ L  +  +  A D+L++M + G  P+S++YN 
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A    + M+ +G  P ++TY +++  L K  ++ +A ++     +KG
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G   +A  LL EM    + PD +TY++L+ G  R+GKV+EA 
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +   + +R GI+P+ +       T+N+++ GLCK+++ D A + L  M+++G  P++ +Y
Sbjct: 505 KFFHEFERMGIRPNAV-------TFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSY 557

Query: 301 FSLIEGIASVDKAAES 316
             LIEG+A    A E+
Sbjct: 558 TILIEGLAYEGMAKEA 573



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 175/316 (55%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G  PD  TY   +SG CK G +  A  +L++M    + P  VTYNT++   C+ G 
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGK 219

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D M+++   P   TY +LI     +  +  A  +L EM ++G  PD +TYN+
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G   +A    ++M   G QP ++T+  ++  +    R ++A++L  + L KG
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V FN LI+  C  G + RA  +L++M +    P+ ++YN L+HG C++ K++ A 
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI 399

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L++M  RG  PD +       TYN ++  LCK+ + + A E+L ++ SKG +P   TY
Sbjct: 400 EYLERMVSRGCYPDIV-------TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY 452

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G+A   K  ++
Sbjct: 453 NTVIDGLAKAGKTGKA 468



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 31/325 (9%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           M + G LEE  + LE M  +G VP  +   TLI G+C  G    A    + +   G +P 
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TYN++I       K  E ++ L  +    + PD +TYN ++   C  G  K+A  + D
Sbjct: 172 VITYNVMISGYC---KAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
            M+ +   P ++TYT LI    + + +  A +L +    +G  PD+V +N L++G C  G
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A   L +M      P+ +T+N ++   C  G+  +A +LL  M R+G  P  ++FN
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P  L+YN L+ G CK ++ D A E L  MVS+
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G  PD  TY +++  +    K  ++
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDA 433



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 141/251 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+   ++ +C++G L  A  +LE+M ++G  P +++YN L+ G+C +  
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + + MV +G  P   TYN ++  L  + K+ +A ++L ++  KG  P  ITYN 
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G   KA  L DEM  K ++P  +TY+SL+  LS++ ++ EA + F  F   G
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V FN+++ G C +   +RA   L  M      P+E +Y  L+ G   +G  +EA 
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574

Query: 241 RLLDQMKRRGI 251
            LL+++  +G+
Sbjct: 575 ELLNELCNKGL 585



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 27/288 (9%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNK-GN-----LEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           +++ +GL   A  + TL  GY N  GN     +  +F+  D              N  + 
Sbjct: 62  KVESSGLNGRAQKFETLSSGYSNSNGNGHYSSVNSSFALED-----------VESNNHLR 110

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
           +++   ++ E    L+ M   G VPD I    LI G+CR G  +KA  + + +   G  P
Sbjct: 111 QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
            ++TY  +I    K   +  A  + +      + PD+V +N ++   C +G +++A  +L
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
             M +   +PD +TY  L+   CR   V  A +LLD+M+ RG  PD +       TYN L
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVV-------TYNVL 280

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + G+CK    D A + L +M S G  P+  T+  ++  + S  +  ++
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 95/182 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY + ++ +CK+G++E+A  +L Q+   G  P  +TYNT+IDG    G 
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM  + + P   TY+ L+  L  E K+ EA     E    GI P+++T+N 
Sbjct: 465 TGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNS 524

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+     +A      MI++G +P   +YT LI  L+ +    EA +L      KG
Sbjct: 525 IMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584

Query: 181 ML 182
           ++
Sbjct: 585 LM 586



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 67/115 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++ ++PD+ TY S V G+ +EG+++EA +   + +  G+ P AVT+N+++ G C    
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQ 534

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            + A  F   M+ +G  P  ++Y +LI  L  E    EA ++L E+  KG++  S
Sbjct: 535 TDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKS 589



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P++ T+ S + G+CK  + + A   L  M   G  P   +Y  LI+G   +G  + A
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573

Query: 65  FSFRDEMVKQGIMPTAST 82
               +E+  +G+M  +S 
Sbjct: 574 LELLNELCNKGLMKKSSA 591


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 172/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD YTY + +   CK    + A ++L +M+E G     VTYN LI G C  G 
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 167

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F+ +M   G++P   TY  LI+ L   R+  EA  +L EM    + P+ + Y  
Sbjct: 168 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 227

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ R GNA +AF +  EM+  G+QP  +TY +L+  L K  +M  A  L +  +   
Sbjct: 228 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 287

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +N +I+GH  + N + AF LL EM+   + P+  TY+ ++HG C+ G+ E+A 
Sbjct: 288 HRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 347

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M  +G+KP+   + P       LI G C+     LA E+  +M    + PD   Y
Sbjct: 348 DLLEEMTTKGLKPNAFVYAP-------LISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 400

Query: 301 FSLIEGIASVDKAAESS 317
            SLI G++ V +  ES+
Sbjct: 401 NSLIFGLSKVGRVEEST 417



 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 174/319 (54%), Gaps = 7/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD +TYG+ ++G+CK  R  EA  +L++M    L P  V Y  LIDG+  +GN
Sbjct: 178 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    EMV  G+ P   TY+ L+  L    +M  A  +LK+M      PD+ITYN+
Sbjct: 238 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 297

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+ R  N K AF L  EM + GI P + TY+ +I  L +     +A  L E    KG
Sbjct: 298 IIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG 357

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++  LI G+C  GN+  A  +  +M ++ V PD   YN+L+ G  + G+VEE+ 
Sbjct: 358 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 417

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +   QM+ RG+ P+         TY+ LI G  KN + + AE+L++ M+  G+ P+D  Y
Sbjct: 418 KYFAQMQERGLLPN-------EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 470

Query: 301 FSLIEGIASVDKAAESSNS 319
             L+E     D   + S++
Sbjct: 471 IDLLESYFKSDDIEKVSST 489



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 175/310 (56%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P+ YTY   + G+C+ G  E+AS +LE+M   GL P A  Y  LI GYC +GN
Sbjct: 318 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 377

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    D+M K  ++P    YN LI  L    ++ E+     +M E+G++P+  TY+ 
Sbjct: 378 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 437

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY + G+ + A  L   M+  G++P  + Y  L+    K + + +    F++ L +G
Sbjct: 438 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 497

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D  ++  LI    ++GN+E AF +L E+++    PD   Y++L+ G C+    E+A 
Sbjct: 498 VMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAF 557

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LD+M ++G+ P+ +        YNALI GLCK+ +   A  +   +++KG+ P+  TY
Sbjct: 558 GILDEMSKKGVDPNIV-------CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 610

Query: 301 FSLIEGIASV 310
            SLI+G   V
Sbjct: 611 TSLIDGSCKV 620



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 176/343 (51%), Gaps = 44/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQP+  TY + V G+CK G+++ AS +L+QM  +   P  +TYN +I+G+    N
Sbjct: 248 MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHN 307

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    EM   GI P   TY+++IH L    +  +A D+L+EM  KG+ P++  Y  
Sbjct: 308 KKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAP 367

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR GN   A  + D+M    + P +  Y SLIF LSK  R+ E+ + F     +G
Sbjct: 368 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 427

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV------------------- 221
           +LP+   ++ LI G+  NG++E A  L++ M    + P++V                   
Sbjct: 428 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 487

Query: 222 ----------------TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLT 264
                            Y  L+H     G +E A R+L ++++ G  PD H+        
Sbjct: 488 STFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHV-------- 539

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           Y++LI GLCK  + + A  +L EM  KG+ P+   Y +LI+G+
Sbjct: 540 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 582



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 169/315 (53%), Gaps = 8/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ P+ +TY   + G  K G LE A +++++M + GL P  V Y  L++ Y    +
Sbjct: 423 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 482

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   S    M+ QG+M     Y +LIH L     M  A  +L E+ + G VPD   Y+ 
Sbjct: 483 IEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSS 542

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + +KAF + DEM  KG+ P ++ Y +LI  L K   +  A  +F + LAKG
Sbjct: 543 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 602

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V + +LIDG C  G+I  AF L  EM    + PD   Y+ L  G    G +E+A 
Sbjct: 603 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 662

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+++M  RG    H S +    ++N L+ G CK  +     +LL  ++ +G+ P+  T 
Sbjct: 663 FLIEEMFLRG----HASIS----SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 714

Query: 301 FSLIEGIASVDKAAE 315
            ++I G++   K +E
Sbjct: 715 ENIISGLSEAGKLSE 729



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 159/313 (50%), Gaps = 28/313 (8%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           K GR+++A+ ++  M++ GL P+    N L+        + + +  R+ MV  GI P   
Sbjct: 59  KSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVY 118

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TY+ LI      R+   A  +L EM E+G   +++TYN+LI G CR G  ++AF    +M
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
              G+ P   TY +LI  L K  R  EA  L +      + P++V++  LIDG    GN 
Sbjct: 179 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 238

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-- 259
           + AF ++KEM    V P+++TY+ L+ G C+ G+++ A  LL QM R   +PD I++N  
Sbjct: 239 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 298

Query: 260 --------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
                                     P   TY+ +I GLC++ E + A +LL EM +KG+
Sbjct: 299 IEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 358

Query: 294 TPDDNTYFSLIEG 306
            P+   Y  LI G
Sbjct: 359 KPNAFVYAPLISG 371



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 155/329 (47%), Gaps = 12/329 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV  D+  YG  +  +   G +E A R+L ++++NG VP    Y++LI G C   +
Sbjct: 493 MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTAD 552

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E AF   DEM K+G+ P    YN LI  L     +  A ++   +  KG+VP+ +TY  
Sbjct: 553 REKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 612

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF L++EM+  GI P    Y+ L    S    + +A  L E    +G
Sbjct: 613 LIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG 672

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I  FN L+DG C  G ++    LL  +    + P+ +T   ++ G    GK+ E  
Sbjct: 673 H-ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 731

Query: 241 RLLDQMKRRGIKPDHISFNPTRL-----------TYNALIQGLCKNQEGDLAEELLREMV 289
            +  +++++  +     F+   +             + +I+  CK    D A  L   +V
Sbjct: 732 TIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIV 791

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +K      ++Y ++++ +    K +E+ N
Sbjct: 792 AKSAPMGCSSYLAIVDNLCRKGKLSEALN 820



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 143/280 (51%), Gaps = 26/280 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P+   Y + + G+CK G +  A  +   +   GLVP  VTY +LIDG C  G+
Sbjct: 563 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 622

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   +EM+  GI P A  Y++L         + +A  +++EM  +G    S ++N 
Sbjct: 623 ISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASIS-SFNN 681

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA----------- 169
           L++G+C+ G  ++   L   ++ +G+ P  LT  ++I  LS+  ++ E            
Sbjct: 682 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 741

Query: 170 --------DQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
                     LF + + +G +P D+V  + +I  HC  GN+++A  +L+++   K  P  
Sbjct: 742 SESAARHFSSLFMDMINQGKIPLDVV--DDMIRDHCKEGNLDKAL-MLRDVIVAKSAPMG 798

Query: 221 VT-YNTLMHGRCRQGKVEEARRLLDQMKRRG-IKPDHISF 258
            + Y  ++   CR+GK+ EA  LL +M +RG ++P  ++ 
Sbjct: 799 CSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVAL 838



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 18/142 (12%)

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  LF   LA G+L  I M  A         +I RA S          H      + L+ 
Sbjct: 7   AGSLFN--LANGLL--IKMIRAYPSPPVVLASIHRALS-------DSGHRSPAVLDVLVD 55

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
              + G+V++A  ++  M+ RG+        P+    NAL++ L +     L  ++   M
Sbjct: 56  TYKKSGRVQDAAEVVLMMRDRGLA-------PSIRCCNALLKDLLRADAMALLWKVREFM 108

Query: 289 VSKGITPDDNTYFSLIEGIASV 310
           V  GI+PD  TY +LIE    V
Sbjct: 109 VGAGISPDVYTYSTLIEAYCKV 130


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P++YTYG  +  +C+  R EEA  +   M   G  P   +Y+ LI G C    
Sbjct: 43  MLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM+  G  P   TY  L+  L    K+ EA D+   M  +G  PD + YN+
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G+  +A+ L +EM+ KG  PT+ TY SL+   S++        LF++ L +G
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P+I  FN L+DG C  G++  A  L  EM  +   PD V+YNTLM G C +GK  EA+
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQ 282

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL +M R G+ PD +S       YN LI G  K+   D A +L  E+   G+ PD  +Y
Sbjct: 283 RLLREMIRSGVGPDIVS-------YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335

Query: 301 FSLIEGIASVDKAAES 316
            ++I+ +    K   +
Sbjct: 336 STIIDCLCRAGKVGAA 351



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 163/320 (50%), Gaps = 28/320 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QP+  TYGS +SG+CK G+L+EA  +  +M   G  P  V YN LIDG+  KG++  A
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +   +EM+++G +PT  TYN L+     + +      + K+M  +G VP+  T+N L++G
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+  +A  L  EM   G  P +++Y +L+  +  + +  EA +L    +  G+ PD
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPD 296

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +N LIDG+  +G ++ A  L  E+ +  + PD  +Y+T++   CR GKV  A  +  
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 245 QMKRRGIKPDHISFNPT--------RLT--------------------YNALIQGLCKNQ 276
            M   G  PD     P         RLT                    YN L+  LCK +
Sbjct: 357 DMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAK 416

Query: 277 EGDLAEELLREMVSKGITPD 296
             D   E+  E+  +G +PD
Sbjct: 417 RSDDVCEIFHELTERGFSPD 436



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 151/297 (50%), Gaps = 7/297 (2%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           +Y   +  + K GR +        M   G VP   TY  L+   C     E A S    M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             QG  P   +Y++LI  L   +K+ EA ++L EM + G  P+ +TY  L++G C+ G  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           K+A  L   M+++G  P  + Y  LI   SK+  M EA +LFE  L KG +P +  +N+L
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           + G    G   R  SL K+M R    P+  T+N L+ G C+ G + EA RL  +M+  G 
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            PD +S       YN L++G+C   +   A+ LLREM+  G+ PD  +Y  LI+G +
Sbjct: 259 PPDVVS-------YNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYS 308



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           +++YN L+    + G     +  +++M+  G  P   TY  L+  L +  R  EA  +F 
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
              A+G  P++  ++ LI G C    ++ A  LL EM      P+ VTY +L+ G C+ G
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           K++EA  L  +M  RG  PD +        YN LI G  K  +   A  L  EM+ KG  
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGV-------VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI 189

Query: 295 PDDNTYFSLIEGIA 308
           P   TY SL+ G +
Sbjct: 190 PTVFTYNSLLSGFS 203



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           ++YN L+    + G+ +      + M   G  P+         TY  L++ LC+ Q  + 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPN-------TYTYGYLLRSLCQAQRFEE 70

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAESSN 318
           A  + R M ++G +P+  +Y  LI G+     VD+AAE  N
Sbjct: 71  ARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLN 111


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 172/306 (56%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R +  +  T+   ++G+CK G+ ++A  ++E MK  G  P+ +TYNT+IDGYC  G 
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGK 279

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   EMV + I P   T+N+LI     +  +  A  + +EM  +G+ P+ +TYN 
Sbjct: 280 MFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS 339

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C  G   +A  L D+M   G++P ++TY +LI    K+  + EA ++ ++   +G
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ FN LID +   G ++ AF L   M    V P+  TYN L+ G CR+G V+EAR
Sbjct: 400 LAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEAR 459

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M+  G+K D +       TYN L+  LCK  E   A  LL EM   G+ P   TY
Sbjct: 460 KLAKEMEGNGLKADLV-------TYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTY 512

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 513 NALIDG 518



 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 173/328 (52%), Gaps = 28/328 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  P   TY + + G CK G++ +A  +L++M    + P  +T+N LIDG+C   N
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDEN 314

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM +QG+ P   TYN LI+ L    K+ EA  +  +M   G+ P+ +TYN 
Sbjct: 315 VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNA 374

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+    K+A  + D++  +G+ P ++T+ +LI    K  RM +A  L    L  G
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +N LI G C  GN++ A  L KEM+   +  D VTYN L+   C++G+  +A 
Sbjct: 435 VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAV 494

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           RLLD+M   G+ P H+++N                               +TYN LI+G 
Sbjct: 495 RLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGF 554

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTY 300
           C   + + A  LL EM+ KG+ P+  TY
Sbjct: 555 CNKGKLEEANRLLNEMLEKGLIPNRTTY 582



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 152/262 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+QP+  TY S ++G+C  G+L+EA  + ++M   GL P  VTYN LI+G+C K  
Sbjct: 325 MQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKM 384

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D++ K+G+ P   T+N LI       +M +A  +   M + G+ P+  TYN 
Sbjct: 385 LKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNC 444

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+CR GN K+A  L  EM   G++  ++TY  L+  L K+    +A +L +     G
Sbjct: 445 LIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVG 504

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + +NALIDG+   GN   A ++   M++     + VTYN L+ G C +GK+EEA 
Sbjct: 505 LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEAN 564

Query: 241 RLLDQMKRRGIKPDHISFNPTR 262
           RLL++M  +G+ P+  +++  R
Sbjct: 565 RLLNEMLEKGLIPNRTTYDILR 586



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 163/320 (50%), Gaps = 28/320 (8%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            V    K G ++ A    ++  + G   +A++ N ++     +G + +  S   EM+++ 
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR 224

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I     T++++I+ L    K  +A D++++M   G  P  ITYN +I+GYC+ G   KA 
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
           +L  EM+ K I P  +T+  LI    +   +  A ++FE    +G+ P++V +N+LI+G 
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C+NG ++ A  L  +M  M + P+ VTYN L++G C++  ++EAR +LD + +RG+ P+ 
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV 404

Query: 256 ISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLRE 287
           I+FN                            P   TYN LI G C+      A +L +E
Sbjct: 405 ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKE 464

Query: 288 MVSKGITPDDNTYFSLIEGI 307
           M   G+  D  TY  L++ +
Sbjct: 465 MEGNGLKADLVTYNILVDAL 484



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 148/262 (56%), Gaps = 7/262 (2%)

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
           ++  + L+  Y   G +++A    D     G   +A + N ++  L+ E ++   + + K
Sbjct: 159 SIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYK 218

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           EM  + I  + +T++++ING C+ G  +KA  + ++M   G  P+++TY ++I    K  
Sbjct: 219 EMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAG 278

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           +M +AD L +  +AK + P+ + FN LIDG C + N+  A  + +EM R  + P+ VTYN
Sbjct: 279 KMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYN 338

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           +L++G C  GK++EA  L D+M   G+KP+ +       TYNALI G CK +    A E+
Sbjct: 339 SLINGLCSNGKLDEALGLQDKMSGMGLKPNVV-------TYNALINGFCKKKMLKEAREM 391

Query: 285 LREMVSKGITPDDNTYFSLIEG 306
           L ++  +G+ P+  T+ +LI+ 
Sbjct: 392 LDDIGKRGLAPNVITFNTLIDA 413



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 111/214 (51%), Gaps = 8/214 (3%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           L  +G  G   +SI  ++L+  Y + G    A    D     G + + L+   ++  L K
Sbjct: 148 LSVLGSWGCA-NSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVK 206

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + R+   + +++  + + +  ++V F+ +I+G C  G  ++A  ++++M      P  +T
Sbjct: 207 EGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVIT 266

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           YNT++ G C+ GK+ +A  LL +M  + I P+ I       T+N LI G C+++    A+
Sbjct: 267 YNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEI-------TFNILIDGFCRDENVTAAK 319

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           ++  EM  +G+ P+  TY SLI G+ S  K  E+
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 51/149 (34%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT---------------- 44
           M+  G++ D  TY   V  +CK+G   +A R+L++M E GL P+                
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGN 524

Query: 45  -------------------AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                               VTYN LI G+CNKG LE A    +EM+++G++P  +TY++
Sbjct: 525 STAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDI 584

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPD 114
           L  E++                EKG +PD
Sbjct: 585 LRDEMM----------------EKGFIPD 597


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 186/349 (53%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD+ TY + + G+CK+GRL EA  +L  MK  GL P   T+N L+ G C  G 
Sbjct: 223 MRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGW 282

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +  + M +  ++P A TYN++I     + ++ EA  + +EM    + PD +TYN 
Sbjct: 283 LKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNT 342

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING    G++++ F L +EM  +G++P  +TY  ++    K+ +M E D+        G
Sbjct: 343 LINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESG 402

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPDIV +N LI  HC  G ++ AF L+ EM R  +  D+VT NT++   CR+ K++EA 
Sbjct: 403 CLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAH 462

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL   +RRG   D +S+                             P+ +TYN++I GL
Sbjct: 463 DLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGL 522

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAESSN 318
           C+  + + A + L E++  G+ PD+ TY ++I G      V+KA +  N
Sbjct: 523 CQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHN 571



 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++P+S TY   V    K+G+++E  + + +M+E+G +P  VTYNTLI  +C  G 
Sbjct: 363 MEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGK 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   DEM ++G+     T N ++  L  ERK+ EA D+L     +G   D ++Y  
Sbjct: 423 MDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGT 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY +   A +A  L DEM  K I P+++TY S+I  L +  +  +A    +  L  G
Sbjct: 483 LIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESG 542

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N +I G+C  G +E+AF    +M      PD VT NTL+ G C++G +E+A 
Sbjct: 543 LVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKAL 602

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G   D +S       YN +I  LCK +    A +LL EM  K + PD  TY
Sbjct: 603 KLFNTWISKGKDVDAVS-------YNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTY 655

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+    +  ++
Sbjct: 656 NAILGGLTDAGRMKDA 671



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 169/308 (54%), Gaps = 14/308 (4%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG---YCNKGNLEMAFSFR 68
           + G++V+  C  GR  +A+++  +MK  G+ PT +T NTL++    + +  ++ ++ +  
Sbjct: 130 SIGAYVA--C--GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVF 185

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            + +K G+    +++N+LIH   ME +  EA  +L +M + G  PD+ITYN +++G C+ 
Sbjct: 186 TDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKK 245

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G   +A  L  +M +KG+ P   T+  L+    +   + EA  + E      ++PD   +
Sbjct: 246 GRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTY 305

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N +I G C  G I  A  L +EM+ +K+ PD VTYNTL++G    G  EE  +L+++M+ 
Sbjct: 306 NVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEG 365

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           RG+KP+ +       TYN +++   K  + D  ++ +R+M   G  PD  TY +LI    
Sbjct: 366 RGMKPNSV-------TYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHC 418

Query: 309 SVDKAAES 316
            V K  E+
Sbjct: 419 KVGKMDEA 426



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 139/250 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ D  T  + +  +C+E +L+EA  +L   +  G     V+Y TLI GY     
Sbjct: 433 MGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEK 492

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM ++ I+P+  TYN +I  L    K  +A D L E+ E G+VPD ITYN 
Sbjct: 493 ASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNT 552

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G  +KAF  H++M+ K  +P ++T  +L+  L K+  + +A +LF  +++KG
Sbjct: 553 IIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKG 612

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D V +N +I   C       AF LL+EM+  K+ PD  TYN ++ G    G++++A 
Sbjct: 613 KDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAE 672

Query: 241 RLLDQMKRRG 250
             + ++  +G
Sbjct: 673 EFISKIAEKG 682



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 39/223 (17%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-----FVLSKQNRMIEADQLF 173
           +I I  Y  CG   +A  + + M   G+QPT+LT  +L+     F  S   R+ +A  +F
Sbjct: 128 DISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKA--VF 185

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
            +F+  G+  +   FN LI G C       A  +L +M      PD +TYNT++ G C++
Sbjct: 186 TDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKK 245

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTY 265
           G++ EAR LL  MK +G+ P+  +FN                            P   TY
Sbjct: 246 GRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTY 305

Query: 266 NALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEG 306
           N +I G CK  +G +AE   L  EM +  ++PD  TY +LI G
Sbjct: 306 NVMISGFCK--QGRIAEAMRLREEMENLKLSPDVVTYNTLING 346


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 170/305 (55%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV P+ YTY   V  +C  G  +EA  +L  M+  G  P  VTYNTL+  +   G 
Sbjct: 181 MLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 240

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M + G+ P   T+N +++ +    KM +A  +  EM  +G+ PD ++YN 
Sbjct: 241 VDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNT 300

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC+ G + +A S+  EM  KGI P ++T+TSLI V+ K   +  A  L      +G
Sbjct: 301 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERG 360

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V F ALIDG C  G ++ A   ++ M + ++ P  V YN L++G C  G+++EAR
Sbjct: 361 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEAR 420

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M+ +G+KPD +       TY+ +I   CKN +   A EL ++M+ KG+ PD  TY
Sbjct: 421 ELLHEMEAKGLKPDVV-------TYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITY 473

Query: 301 FSLIE 305
            SLI 
Sbjct: 474 SSLIR 478



 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 174/314 (55%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  T+ S +  MCK G LE A  ++ QM+E GL    VT+  LIDG+C KG 
Sbjct: 321 MTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGF 380

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M +  I P+   YN LI+   M  +M EA ++L EM  KG+ PD +TY+ 
Sbjct: 381 LDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYST 440

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YC+  +   AF L+ +M+ KG+ P  +TY+SLI VL  + R+ +A  LF+N +  G
Sbjct: 441 IISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLG 500

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   + +LIDGHC  GN+E A SL  +M +  V PD VTY+ L++G  +  +  EA+
Sbjct: 501 LQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQ 560

Query: 241 RLLDQMKRRGIKPDHISFNPTR--------LTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +LL ++      P +  ++            +  AL++G C     + A+++ + M+ + 
Sbjct: 561 QLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRN 620

Query: 293 ITPDDNTYFSLIEG 306
              D + Y  LI G
Sbjct: 621 WNLDGSVYSVLIHG 634



 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 173/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++P+  T+ S V+GMCK G++E+A ++ ++M   GL P  V+YNTL+ GYC  G 
Sbjct: 251 MREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGC 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A S   EM ++GIMP   T+  LIH +     +  A  ++++M E+G+  + +T+  
Sbjct: 311 SHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTA 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G    A      M    I+P+++ Y +LI       RM EA +L     AKG
Sbjct: 371 LIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKG 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ +I  +C N +   AF L ++M    V PD +TY++L+   C + ++ +A 
Sbjct: 431 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAH 490

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M + G++PD         TY +LI G CK    + A  L  +MV  G+ PD  TY
Sbjct: 491 VLFKNMIKLGLQPD-------EFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTY 543

Query: 301 FSLIEGIASVDKAAES 316
             LI G++   +A E+
Sbjct: 544 SVLINGLSKSARAMEA 559



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 166/320 (51%), Gaps = 22/320 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   ++P    Y + ++G C  GR++EA  +L +M+  GL P  VTY+T+I  YC   +
Sbjct: 391 MKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCD 450

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF    +M+++G++P A TY+ LI  L  E+++ +A  + K M + G+ PD  TY  
Sbjct: 451 THSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTS 510

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN + A SLHD+M+  G+ P ++TY+ LI  LSK  R +EA QL      + 
Sbjct: 511 LIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHED 570

Query: 181 MLPDIVMFNAL---------------IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
            +P    ++AL               + G C  G +  A  + + M     + D   Y+ 
Sbjct: 571 PIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSV 630

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+HG CR G V +A     QM + G       F P   +  +LI+GL +N     A++++
Sbjct: 631 LIHGHCRAGNVMKALSFHKQMLQGG-------FAPNSTSTISLIRGLFENGMVVEADQVI 683

Query: 286 REMVSKGITPDDNTYFSLIE 305
           +++++     D     +LI+
Sbjct: 684 QQLLNYCSLADAEASKALID 703



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 123/268 (45%), Gaps = 50/268 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY S +  +C E RL +A  + + M + GL P   TY +LIDG+C +GN
Sbjct: 461 MLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGN 520

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP------- 113
           +E A S  D+MVK G++P   TY++LI+ L    + +EA  +L ++  +  +P       
Sbjct: 521 VESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDA 580

Query: 114 -------------------------------------------DSITYNILINGYCRCGN 130
                                                      D   Y++LI+G+CR GN
Sbjct: 581 LMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGN 640

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KA S H +M+  G  P   +  SLI  L +   ++EADQ+ +  L    L D     A
Sbjct: 641 VMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKA 700

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHP 218
           LID +   GN++    +L  M +  + P
Sbjct: 701 LIDLNLNEGNVDAVLDVLHGMAKDGLLP 728



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + + G C +G + EA ++ + M +         Y+ LI G+C  GN+  A SF  +M++ 
Sbjct: 595 ALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQG 654

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G  P +++   LI  L     +VEAD +++++     + D+     LI+     GN    
Sbjct: 655 GFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAV 714

Query: 135 FSLHDEMIHKGIQPT 149
             +   M   G+ P+
Sbjct: 715 LDVLHGMAKDGLLPS 729



 Score = 38.1 bits (87), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 38/75 (50%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+S +  S + G+ + G + EA ++++Q+     +  A     LID   N+GN++  
Sbjct: 655 GFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAV 714

Query: 65  FSFRDEMVKQGIMPT 79
                 M K G++P+
Sbjct: 715 LDVLHGMAKDGLLPS 729


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 173/342 (50%), Gaps = 42/342 (12%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M++ G+ PD  TY S ++G CK G L+EA  +   ++  GL PT +TYN LIDGYC  G+
Sbjct: 1251 MRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 1310

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD------ 114
            LE A   ++EM +QG +P   TY +L+   L  R +  A +   EM  KG+ PD      
Sbjct: 1311 LEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNT 1370

Query: 115  -----------------------------SITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                         ++TYNILI+G C+ GN K A  L  +M+  G
Sbjct: 1371 RICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNG 1430

Query: 146  IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +QP  +TYT LI    ++  + EA ++F N ++ G+LP  V F  +I  +C  GN+  A+
Sbjct: 1431 LQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAY 1490

Query: 206  SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
               ++M    V P+E+TYN L+H  CR G+ + A     +M  RG+  +       + TY
Sbjct: 1491 GWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVAN-------KYTY 1543

Query: 266  NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              LI G CK    + A     EM   GI PD  T+ +L++G 
Sbjct: 1544 TLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGF 1585



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 164/338 (48%), Gaps = 28/338 (8%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M++ G+ P   TY + + G+ + G +E A     +M+  GL+P  +TYN+L++GYC  GN
Sbjct: 1216 MENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGN 1275

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L+ A     ++ + G+ PT  TYN+LI        + EA  + +EMGE+G +P+  TY I
Sbjct: 1276 LKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTI 1335

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+ G     +   A    DEM+ KG+QP    Y + I        +  A +L E  + +G
Sbjct: 1336 LMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEG 1395

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +  D V +N LI G C  GN++ A  L  +M    + PD +TY  L+H  C +G + EAR
Sbjct: 1396 ISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREAR 1455

Query: 241  RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            ++ + M   G+ P  ++F                             P  +TYN LI  L
Sbjct: 1456 KIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 1515

Query: 273  CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            C+     LA     EM+ +G+  +  TY  LI+G   V
Sbjct: 1516 CRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKV 1553



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 179/380 (47%), Gaps = 64/380 (16%)

Query: 2    KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
            +  G  P+  TY   ++G+ ++G LEEA+ ++E M+ +    ++ TYN LI G   +G +
Sbjct: 1148 RGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA-SSFTYNPLITGLLARGCV 1206

Query: 62   EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
            +  +  + EM  +GIMPT  TYN +IH LL    +  A     EM   G++PD ITYN L
Sbjct: 1207 KKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSL 1266

Query: 122  INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI------------------------ 157
            +NGYC+ GN K+A  L  ++   G+ PT+LTY  LI                        
Sbjct: 1267 LNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGC 1326

Query: 158  -------FVLSKQNRMIE----ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
                    +L K +  +     A + F+  L+KG+ PD   +N  I      G+I RAF 
Sbjct: 1327 LPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFE 1386

Query: 207  LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------- 259
            L + +    +  D VTYN L+HG C+ G +++A+ L  +M   G++PD I++        
Sbjct: 1387 LREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHC 1446

Query: 260  ---------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                                 P+ +T+  +I   C+      A    R+M+ +G+ P++ 
Sbjct: 1447 ERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEI 1506

Query: 299  TYFSLIEGIASVDKAAESSN 318
            TY  LI  +  + +   +S+
Sbjct: 1507 TYNVLIHALCRMGRTQLASH 1526



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 164/305 (53%), Gaps = 16/305 (5%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S GV PD       +  +    R ++   + E+M E G+ P+ VTYNTL+D +  +G 
Sbjct: 1075 MASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGR 1134

Query: 61   LEMAFSFRDEMVKQ--GIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSI 116
             +       EM  +  G +P   TYN++I  L  +  + EA ++++ M   +K     S 
Sbjct: 1135 KDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA---SSF 1191

Query: 117  TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-FEN 175
            TYN LI G    G  KK + L  EM ++GI PT++TY ++I  L  Q+ ++EA Q+ F  
Sbjct: 1192 TYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGL-LQSGLVEAAQVKFAE 1250

Query: 176  FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
              A G+LPD++ +N+L++G+C  GN++ A  L  ++ R  + P  +TYN L+ G CR G 
Sbjct: 1251 MRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 1310

Query: 236  VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +EEAR L ++M  +G  P+         TY  L++G    +   +A E   EM+SKG+ P
Sbjct: 1311 LEEARILKEEMGEQGCLPN-------VCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQP 1363

Query: 296  DDNTY 300
            D   Y
Sbjct: 1364 DCFAY 1368



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 133/288 (46%), Gaps = 50/288 (17%)

Query: 66   SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML---KEMGEKGIVPDSITYNILI 122
            +FR EM   G+ P     N ++  L   R     DD+    +EM E GI P  +TYN L+
Sbjct: 1071 AFR-EMASHGVAPDVKDCNRVLRVL---RDAARWDDICAVHEEMLELGIEPSIVTYNTLL 1126

Query: 123  NGYCRCGNAKKAFSLHDEMIHK--GIQPTMLTYTSLIFVLSKQNRMIEADQLFE------ 174
            + + + G   K   L  EM  +  G  P  +TY  +I  L+++  + EA +L E      
Sbjct: 1127 DSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK 1186

Query: 175  ------------NFLAK----------------GMLPDIVMFNALIDGHCTNGNIERAFS 206
                          LA+                G++P +V +NA+I G   +G +E A  
Sbjct: 1187 KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQV 1246

Query: 207  LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
               EM  M + PD +TYN+L++G C+ G ++EA  L   ++R G+        PT LTYN
Sbjct: 1247 KFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLA-------PTVLTYN 1299

Query: 267  ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
             LI G C+  + + A  L  EM  +G  P+  TY  L++G  +V   A
Sbjct: 1300 ILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLA 1347



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  RG+  + YTY   + G CK G  E+A R   +M +NG+ P  +T+  L+ G+   G+
Sbjct: 1531 MLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGF--DGH 1588

Query: 61   LEMAFSFRDEMV 72
            +     + D ++
Sbjct: 1589 VHHTIEYLDNVI 1600


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  P++YTYG  +  +C+  R EEA  +   M   G  P   +Y+ LI G C    
Sbjct: 43  MLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQK 102

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM+  G  P   TY  L+  L    K+ EA D+   M  +G  PD + YN+
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G+  +A+ L +EM+ KG  PT+ TY SL+   S++        LF++ L +G
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P+I  FN L+DG C  G++  A  L  EM  +   PD V+YNTL+ G C +GK  EA+
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQ 282

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL +M R G+ PD +S       YN LI G  K+   D A +L  E+   G+ PD  +Y
Sbjct: 283 RLLREMIRSGVGPDIVS-------YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335

Query: 301 FSLIEGIASVDKAAES 316
            ++I+ +    K   +
Sbjct: 336 STIIDCLCRAGKVGAA 351



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 163/320 (50%), Gaps = 28/320 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QP+  TYGS +SG+CK G+L+EA  +  +M   G  P  V YN LIDG+  KG++  A
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +   +EM+++G +PT  TYN L+     + +      + K+M  +G VP+  T+N L++G
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+  +A  L  EM   G  P +++Y +LI  +  + +  EA +L    +  G+ PD
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPD 296

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +N LIDG+  +G ++ A  L  E+ +  + PD  +Y+T++   CR GKV  A  +  
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 245 QMKRRGIKPDHISFNPT--------RLT--------------------YNALIQGLCKNQ 276
            M   G  PD     P         RLT                    YN L+  LCK +
Sbjct: 357 DMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAK 416

Query: 277 EGDLAEELLREMVSKGITPD 296
             D   E+  E+  +G +PD
Sbjct: 417 RSDDVCEIFHELTERGFSPD 436



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 150/295 (50%), Gaps = 7/295 (2%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           +Y   +  + K GR +        M   G VP   TY  L+   C     E A S    M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             QG  P   +Y++LI  L   +K+ EA ++L EM + G  P+ +TY  L++G C+ G  
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           K+A  L   M+++G  P  + Y  LI   SK+  M EA +LFE  L KG +P +  +N+L
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           + G    G   R  SL K+M R    P+  T+N L+ G C+ G + EA RL  +M+  G 
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            PD +S       YN LI+G+C   +   A+ LLREM+  G+ PD  +Y  LI+G
Sbjct: 259 PPDVVS-------YNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDG 306



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           +++YN L+    + G     +  +++M+  G  P   TY  L+  L +  R  EA  +F 
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
              A+G  P++  ++ LI G C    ++ A  LL EM      P+ VTY +L+ G C+ G
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           K++EA  L  +M  RG  PD +        YN LI G  K  +   A  L  EM+ KG  
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGV-------VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI 189

Query: 295 PDDNTYFSLIEGIA 308
           P   TY SL+ G +
Sbjct: 190 PTVFTYNSLLSGFS 203



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 92/185 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G  PD  +Y + + GMC +G+  EA R+L +M  +G+ P  V+YN LIDGY   G 
Sbjct: 253 MRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGA 312

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     E+ K G+ P A +Y+ +I  L    K+  A  + K+M   G  PD+     
Sbjct: 313 LDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIP 372

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G CR     ++  L   M+     P +  Y  L++ L K  R  +  ++F     +G
Sbjct: 373 LVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERG 432

Query: 181 MLPDI 185
             PD+
Sbjct: 433 FSPDV 437



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           ++YN L+    + G+ +      + M   G  P+         TY  L++ LC+ Q  + 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPN-------TYTYGYLLRSLCQAQRFEE 70

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAESSN 318
           A  + R M ++G +P+  +Y  LI G+     VD+AAE  N
Sbjct: 71  ARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLN 111


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 170/304 (55%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV P+ YTY   +  +C  G  +EA  +L  M+  G  P  VTYNTL+  +   G 
Sbjct: 141 MLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M+  G+ P   T+N +++ +    KM +A  +  EM  +G+ PD ++YN 
Sbjct: 201 VDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNT 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC+ G + +A S+  EM  KGI P ++T+TSLI V+ K   +  A  L      +G
Sbjct: 261 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERG 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V F ALIDG C  G ++ A   ++ M + ++ P  V YN L++G C  G+++EAR
Sbjct: 321 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEAR 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M+ +G+KPD +       TY+ +I   CKN +   A EL ++M+ KG+ PD  TY
Sbjct: 381 ELLHEMEAKGLKPDVV-------TYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITY 433

Query: 301 FSLI 304
            SLI
Sbjct: 434 SSLI 437



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 176/314 (56%), Gaps = 8/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  T+ S +  MCK G LE A  ++ QM+E GL    VT+  LIDG+C KG 
Sbjct: 281 MTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGF 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M +  I P+   YN LI+   M  +M EA ++L EM  KG+ PD +TY+ 
Sbjct: 341 LDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYST 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ YC+  +   AF L+ +M+ KG+ P  +TY+SLI VL ++ R+ +A  LF+N +  G
Sbjct: 401 IISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   + +LIDGHC  GN+ERA SL  +M +  V PD VTY+ L++G  +  +  EA+
Sbjct: 461 LQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQ 520

Query: 241 RLLDQMKRRGIKPDHISFNPTR--------LTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +LL ++      P +  ++            +  AL++G C     + A+++ + M+ + 
Sbjct: 521 QLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRN 580

Query: 293 ITPDDNTYFSLIEG 306
              D + Y  LI G
Sbjct: 581 WNLDGSVYSVLIHG 594



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 171/312 (54%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P+  T+ S V+GMCK G++E+A ++ ++M   GL P  V+YNTL+ GYC  G    A
Sbjct: 215 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEA 274

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM ++GIMP   T+  LIH +     +  A  ++++M E+G+  + +T+  LI+G
Sbjct: 275 LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDG 334

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A      M    I+P+++ Y +LI       RM EA +L     AKG+ PD
Sbjct: 335 FCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 394

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ +I  +C N +   AF L ++M    V PD +TY++L+   C + ++ +A  L  
Sbjct: 395 VVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFK 454

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M + G++PD         TY +LI G CK    + A  L  +MV  G+ PD  TY  LI
Sbjct: 455 NMIKLGLQPD-------EFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLI 507

Query: 305 EGIASVDKAAES 316
            G++   +A E+
Sbjct: 508 NGLSKSARAMEA 519



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 168/320 (52%), Gaps = 22/320 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++P    Y + ++G C  GR++EA  +L +M+  GL P  VTY+T+I  YC   +
Sbjct: 351 MRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCD 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF    +M+++G++P A TY+ LI  L  E+++ +A  + K M + G+ PD  TY  
Sbjct: 411 THSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTS 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN ++A SLHD+M+  G+ P ++TY+ LI  LSK  R +EA QL      + 
Sbjct: 471 LIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEE 530

Query: 181 MLPDIVMFNAL---------------IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
            +P    ++AL               + G C  G +  A  + + M     + D   Y+ 
Sbjct: 531 PIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSV 590

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+HG CR G V +A     QM +RG       F P   +  +LI+GL +N     A++++
Sbjct: 591 LIHGHCRAGNVMKALSFHKQMLQRG-------FAPNSTSTISLIRGLFENGMVVEADQVI 643

Query: 286 REMVSKGITPDDNTYFSLIE 305
           +++++     D     +LI+
Sbjct: 644 QQLLNCCSLADAEASKALID 663



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 125/268 (46%), Gaps = 50/268 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY S +  +C+E RL +A  + + M + GL P   TY +LIDG+C +GN
Sbjct: 421 MLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGN 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI--------------------HE----------- 89
           +E A S  D+MVK G++P   TY++LI                    HE           
Sbjct: 481 VERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDA 540

Query: 90  -------------------LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                M+  M EAD + + M ++    D   Y++LI+G+CR GN
Sbjct: 541 LMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGN 600

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KA S H +M+ +G  P   +  SLI  L +   ++EADQ+ +  L    L D     A
Sbjct: 601 VMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKA 660

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHP 218
           LID +   GN++    +L  M +  + P
Sbjct: 661 LIDLNLNEGNVDAVLDVLHGMAKDGLLP 688



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 64/135 (47%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + + G C +G + EA ++ + M +         Y+ LI G+C  GN+  A SF  +M+++
Sbjct: 555 ALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQR 614

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G  P +++   LI  L     +VEAD +++++     + D+     LI+     GN    
Sbjct: 615 GFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAV 674

Query: 135 FSLHDEMIHKGIQPT 149
             +   M   G+ P+
Sbjct: 675 LDVLHGMAKDGLLPS 689



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+S +  S + G+ + G + EA ++++Q+     +  A     LID   N+GN
Sbjct: 611 MLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGN 670

Query: 61  LEMAFSFRDEMVKQGIMPT 79
           ++        M K G++P+
Sbjct: 671 VDAVLDVLHGMAKDGLLPS 689


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 181/340 (53%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   VQP+   Y + + G+CK+G + +A  +  Q+ E G++  AVTYN+LIDG C+ G 
Sbjct: 186 MEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       +MV++ + P   T+N+LI  L  E +++EA  +L  M ++G  PD +TYN 
Sbjct: 246 WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNA 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC   N  +A  L + M+ +G++P +L Y  LI    K   + EA  LF+    K 
Sbjct: 306 LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKN 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P I  +N+LIDG C +G I     LL EM      PD VTYN L+   C++G++ EA 
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +L  M ++G+KP+ +++N                            P  L YN LI G 
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           CK +  D A  L +EM  K + PD  +Y SLI+G+ ++ +
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGR 525



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 166/316 (52%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V PD YT+   +  +CKEGR+ EA  +L  M + G  P  VTYN L++GYC++ N
Sbjct: 256 MVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + MVK+G+ P    YN+LI      + + EA  + KE+  K +VP   +YN 
Sbjct: 316 VHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G       L DEM      P ++TY  LI  L K+ R++EA  +    + KG
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +NA++DG+C   N+  A  +   M +  + PD + YN L++G C+   V+EA 
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAI 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M+ + + PD  S       YN+LI GLC        +ELL EM   G +PD  TY
Sbjct: 496 VLFKEMRHKNLIPDIAS-------YNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITY 548

Query: 301 FSLIEGIASV---DKA 313
             L++        DKA
Sbjct: 549 NILLDAFCKTQPFDKA 564



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 161/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD   Y   + G CK   ++EA  + +++    LVPT  +YN+LIDG CN G 
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       DEM      P   TYN+LI  L  E +++EA  +L  M +KG+ P+ +TYN 
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYC   N   A  + + M+  G++P +L Y  LI    K   + EA  LF+    K 
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKN 505

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PDI  +N+LIDG C  G I     LL EM      PD +TYN L+   C+    ++A 
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  Q+   GI PD         T +A++  LCK ++  +AE+ L+ ++  G +P+  TY
Sbjct: 566 SLFRQIV-EGIWPDF-------YTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617

Query: 301 FSLIEGIA 308
             LI  + 
Sbjct: 618 TILINALC 625



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 156/309 (50%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   +  + + G    A  +  Q++  G+ P+  T+  LI+ Y ++ +   AFS 
Sbjct: 53  PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K G  P   T+N +I+   +   + +A D  + +  +G + D  TY  LING  +
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K A  L  EM    +QP ++ Y++LI  L K   + +A  L      +G+L D V 
Sbjct: 173 NGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVT 232

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LIDG C+ G  +    LL +M R  V PD+ T+N L+   C++G++ EA+ +L  M 
Sbjct: 233 YNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMS 292

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +RG KPD +       TYNAL++G C  +    A EL   MV +G+ PD   Y  LI+G 
Sbjct: 293 KRGEKPDIV-------TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGY 345

Query: 308 ASVDKAAES 316
                  E+
Sbjct: 346 CKTKMVDEA 354



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 157/309 (50%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S+G+ P   T+   ++    +     A  +L  + ++G  P  VT+NT+I+G+C  G 
Sbjct: 81  LQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGM 140

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F   ++ QG +    TY  LI+ L    ++  A  +L+EM +  + P+ + Y+ 
Sbjct: 141 IFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSA 200

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L  ++  +GI    +TY SLI       R  E  QL    + + 
Sbjct: 201 LIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVREN 260

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   FN LID  C  G I  A  +L  M +    PD VTYN LM G C +  V EAR
Sbjct: 261 VDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAR 320

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M +RG++PD        L YN LI G CK +  D A  L +E+ +K + P   +Y
Sbjct: 321 ELFNRMVKRGLEPD-------VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASY 373

Query: 301 FSLIEGIAS 309
            SLI+G+ +
Sbjct: 374 NSLIDGLCN 382



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 158/312 (50%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QP+  T+ + ++G C  G + +A    + +   G +    TY TLI+G    G ++ A
Sbjct: 120 GYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAA 179

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM K  + P    Y+ LI  L  +  + +A  +  ++GE+GI+ D++TYN LI+G
Sbjct: 180 LHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDG 239

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G  ++   L  +M+ + + P   T+  LI  L K+ R++EA  +      +G  PD
Sbjct: 240 CCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD 299

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +NAL++G+C+  N+  A  L   M +  + PD + YN L+ G C+   V+EA  L  
Sbjct: 300 IVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFK 359

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++  + +        PT  +YN+LI GLC +      ++LL EM      PD  TY  LI
Sbjct: 360 ELCNKNLV-------PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILI 412

Query: 305 EGIASVDKAAES 316
           + +    +  E+
Sbjct: 413 DALCKEGRILEA 424



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 145/294 (49%), Gaps = 8/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      PD  TY   +  +CKEGR+ EA  +L  M + G+ P  VTYN ++DGYC + N
Sbjct: 396 MHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNN 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    + MVK G+ P    YN+LI+       + EA  + KEM  K ++PD  +YN 
Sbjct: 456 VNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNS 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G       L DEM   G  P ++TY  L+    K     +A  LF   + +G
Sbjct: 516 LIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQ-IVEG 574

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD    +A++D  C    ++ A   LK +      P+  TY  L++  C+ G   EA 
Sbjct: 575 IWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAM 634

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            LL +M+     PD I       T+  +I  L +  E D AE+L  EM+++G+ 
Sbjct: 635 LLLSKMEDNDRPPDAI-------TFEIIIGVLLQRNETDKAEKLREEMIARGLV 681


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 7/314 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +R   PD+ TYG  V  +CK  R+++A   +E+M   G+ P A  YN ++ G C +  +E
Sbjct: 2   ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVE 61

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++MVKQ I P   TYN LI+ L    ++  A ++ KEM  KG VP  ++YN LI
Sbjct: 62  EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 121

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+C+  +   A  + D+M+     P ++TYT+LI  LSK  ++  A ++ +  + KG+ 
Sbjct: 122 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 181

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  ++ LIDG C    ++ A  LL++M    + P  VTYN L++  CR  K+E+A +L
Sbjct: 182 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 241

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              M +R         +PT +TYN L++ LC +++ D A  L  EM++KG  PD  TY +
Sbjct: 242 FRGMAQR-------RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDT 294

Query: 303 LIEGIASVDKAAES 316
           L  G+    K  E+
Sbjct: 295 LAWGLTRAGKVHEA 308



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 161/288 (55%), Gaps = 7/288 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++PD++ Y   +SG+C+E ++EEA  + E+M +  + P  VTYNTLI+G C    
Sbjct: 35  MATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWR 94

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+    EM  +G +PT  +YN LI     ++ +V A D+  +M     VP+ +TY  
Sbjct: 95  IETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTT 154

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G  + A  + D M+ KG+ P + TY+ LI    K  R+ EA +L E  + +G
Sbjct: 155 LIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 214

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +N L++  C    +E AF L + M + + HP  VTYNTL+   C   +++ A 
Sbjct: 215 IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAH 274

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           RL  +M  +G  PD I       TY+ L  GL +  +   A+EL+ +M
Sbjct: 275 RLYAEMIAKGCPPDAI-------TYDTLAWGLTRAGKVHEAQELMEKM 315



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/247 (35%), Positives = 142/247 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  TY + ++G+CK  R+E A  + ++M   G VPT V+YNTLIDG+C K +
Sbjct: 70  MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 129

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D+MV+   +P   TY  LI  L    K+  A ++L  M +KG+ P+  TY+ 
Sbjct: 130 LVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSC 189

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+     +A  L ++M+ +GI PT++TY  L+  L + +++ +A +LF     + 
Sbjct: 190 LIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRR 249

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N L+   C +  ++ A  L  EM      PD +TY+TL  G  R GKV EA+
Sbjct: 250 CHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQ 309

Query: 241 RLLDQMK 247
            L+++MK
Sbjct: 310 ELMEKMK 316



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +A+   PD + +  +++  C    I+ A + ++EM    + PD   YN ++ G C++ KV
Sbjct: 1   MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           EEAR L ++M ++ I       NP  +TYN LI GLCK    + A EL +EM  KG  P 
Sbjct: 61  EEARLLFEKMVKQRI-------NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPT 113

Query: 297 DNTYFSLIEGI 307
           + +Y +LI+G 
Sbjct: 114 EVSYNTLIDGF 124


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 181/316 (57%), Gaps = 9/316 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++   PD  TY + V  +CK G+ +EA  ML +M   G  P  VT++TLIDG C  G+ E
Sbjct: 71  AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEE 130

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYNIL 121
            AF   ++++++G+  + + +  +I  L  +   VE A  +L  +  KG  P  + +N++
Sbjct: 131 QAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLV 190

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+C+  +   A+ L + MI KG  P + T+T LI  L K NR+ EA QL E  +  G 
Sbjct: 191 INGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGC 250

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P++V ++ +I+G C  G ++ A+ L + M+R    P+ VT+N L+ G C+  ++EEAR+
Sbjct: 251 SPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQ 310

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN-TY 300
           L  +M+  G  PD I       TYN+LI GLCK+ + D A +L + +   G++  +  TY
Sbjct: 311 LYHRMRETGCAPDII-------TYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTY 363

Query: 301 FSLIEGIASVDKAAES 316
            +L  G A++ + A++
Sbjct: 364 STLFHGYAALGRMADA 379



 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 176/343 (51%), Gaps = 33/343 (9%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +R   P+ +TYG  + G    G L+ A ++LE+MK NG    AV + TL+ G C+ G + 
Sbjct: 2   ARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVV 61

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M K    P   TY  L+H L    K  EA  ML+EM  +G  PD++T++ LI
Sbjct: 62  EALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLI 120

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE-ADQLFENFLAKGM 181
           +G C+ G+ ++AF + +++I +G+  +   + ++I  L  +   +E A ++    +AKG 
Sbjct: 121 DGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGF 180

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P ++MFN +I+G C   +++ A+ LL+ M      P+  T+  L+ G C+  +V EA++
Sbjct: 181 TPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQ 240

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           LL++M   G  P+ ++++                            P  +T+N LI GLC
Sbjct: 241 LLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLC 300

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           K +  + A +L   M   G  PD  TY SLI+G+     VD+A
Sbjct: 301 KAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEA 343



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 160/305 (52%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  PD+ T+ + + G+CK G  E+A R+LE + + G+  +   + T+I   CNK N
Sbjct: 104 MIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYN 163

Query: 61  -LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +E+A      ++ +G  PT   +NL+I+     + +  A  +L+ M EKG VP+  T+ 
Sbjct: 164 SVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFT 223

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ILI G C+     +A  L ++M+  G  P ++TY+++I  L KQ ++ +A +LF+    +
Sbjct: 224 ILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERR 283

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
              P++V  N LIDG C    IE A  L   M      PD +TYN+L+ G C+  +V+EA
Sbjct: 284 NCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEA 343

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L   +   G+   +       +TY+ L  G         A  +   +V KG +PD  T
Sbjct: 344 FQLFQTIPESGVSAAN------AVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLAT 397

Query: 300 YFSLI 304
           Y SLI
Sbjct: 398 YTSLI 402



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 166/354 (46%), Gaps = 40/354 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+ +T+   ++G+CK  R+ EA ++LE+M   G  P  VTY+T+I+G C +G 
Sbjct: 210 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQ 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+     M ++   P   T+N+LI  L   +++ EA  +   M E G  PD ITYN 
Sbjct: 270 VDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPT-MLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C+     +AF L   +   G+     +TY++L    +   RM +A ++F   + K
Sbjct: 330 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 389

Query: 180 GMLPDIVMFNALIDGHCTN----------------------------------GN-IERA 204
           G  PD+  + +LI  +C                                    GN  ERA
Sbjct: 390 GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 449

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L   M       D + YN ++ G  R  K  +A  +L+Q+    I      FNP+   
Sbjct: 450 IQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQV----IDKRDRKFNPSSSA 505

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            +AL++ LC+    D A++LL +M  +G     ++Y  L+ G++ + +  E++ 
Sbjct: 506 VDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQ 559



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 161/317 (50%), Gaps = 13/317 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R   P+  T+   + G+CK  R+EEA ++  +M+E G  P  +TYN+LIDG C    
Sbjct: 280 MERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQ 339

Query: 61  LEMAFSFRDEMVKQGI-MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           ++ AF     + + G+    A TY+ L H      +M +A  +   + +KG  PD  TY 
Sbjct: 340 VDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYT 399

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI  YC+   A +   L +EM  KG  P + T ++++  L + N    A QLF++  A+
Sbjct: 400 SLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAAR 459

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEM----DRMKVHPDEVTYNTLMHGRCRQGK 235
           G   D +++N +++G        +A ++L+++    DR K +P     + L+   C+ G+
Sbjct: 460 GCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDR-KFNPSSSAVDALVESLCQVGR 518

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            ++A++LL +M  RG       F     +YN L+ GL + Q  D A ++   MVS G  P
Sbjct: 519 TDDAKQLLHKMSERG-------FAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAP 571

Query: 296 DDNTYFSLIEGIASVDK 312
           + +T   +I  + S  K
Sbjct: 572 EISTVNVVISWLCSAAK 588



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 151/311 (48%), Gaps = 8/311 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G  P    +   ++G CK   L+ A ++LE M E G VP   T+  LI G C    + 
Sbjct: 177 AKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVG 236

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++MV  G  P   TY+ +I+ L  + ++ +A ++ + M  +   P+ +T+NILI
Sbjct: 237 EAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 296

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM- 181
           +G C+    ++A  L+  M   G  P ++TY SLI  L K  ++ EA QLF+     G+ 
Sbjct: 297 DGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS 356

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             + V ++ L  G+   G +  A  +   +      PD  TY +L+   C+  +  E   
Sbjct: 357 AANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVE 416

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L+++M  +G       F P   T +A++ GL +    + A +L   M ++G T D   Y 
Sbjct: 417 LVEEMASKG-------FPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYN 469

Query: 302 SLIEGIASVDK 312
            ++EG+A   K
Sbjct: 470 LVVEGMARASK 480



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 74/328 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGL-VPTAVTYNTLIDGYCNKG 59
           M+  G  PD  TY S + G+CK  +++EA ++ + + E+G+    AVTY+TL  GY   G
Sbjct: 315 MRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALG 374

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHEL----------------------------- 90
            +  A      +V +G  P  +TY  LI E                              
Sbjct: 375 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLS 434

Query: 91  -----LMERKMVE-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                L E    E A  +   M  +G   D++ YN+++ G  R     KA ++ +++I K
Sbjct: 435 AVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDK 494

Query: 145 --------------------------------------GIQPTMLTYTSLIFVLSKQNRM 166
                                                 G    + +Y  L+  LS+  R 
Sbjct: 495 RDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRW 554

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            EA Q+FE  ++ G  P+I   N +I   C+   ++ A+ L++ M ++   PD  T NTL
Sbjct: 555 DEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTL 614

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           + G C+ G+ + AR+LL++M   G++P+
Sbjct: 615 IGGYCKSGRADLARKLLEEMTEAGLEPN 642



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 9/241 (3%)

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           MP   TY +LI        +  A  +L+EM   G   +++ +  L+ G C  G   +A  
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
            H   + K   P ++TYT+L+  L K  +  EA  +    +A+G  PD V F+ LIDG C
Sbjct: 66  -HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLC 124

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-RQGKVEEARRLLDQMKRRGIKPDH 255
             G+ E+AF +L+++ +  +   +  + T++   C +   VE A ++L  +  +G     
Sbjct: 125 KFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKG----- 179

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
             F PT L +N +I G CK ++ D A +LL  M+ KG  P+  T+  LI G+   ++  E
Sbjct: 180 --FTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGE 237

Query: 316 S 316
           +
Sbjct: 238 A 238



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 106/229 (46%), Gaps = 3/229 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  P   T  + + G+ +    E A ++ + M   G    A+ YN +++G      
Sbjct: 421 MASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASK 480

Query: 61  LEMAFSFRDEMVKQ---GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
              A +  ++++ +      P++S  + L+  L    +  +A  +L +M E+G      +
Sbjct: 481 HNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSS 540

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN L++G  R     +A  + + M+  G  P + T   +I  L    ++ +A +L +   
Sbjct: 541 YNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMS 600

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             G  PDI   N LI G+C +G  + A  LL+EM    + P++ T++ L
Sbjct: 601 KLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 8/131 (6%)

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +A+  +P+   +  LI G  + G+++ A  LL+EM       + V + TLM G C  G+V
Sbjct: 1   MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRV 60

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA      M +           P  +TY AL+  LCK  + D A+ +LREM+++G  PD
Sbjct: 61  VEALEHFRAMAK--------DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPD 112

Query: 297 DNTYFSLIEGI 307
             T+ +LI+G+
Sbjct: 113 TVTFSTLIDGL 123


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 168/304 (55%), Gaps = 10/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD YTYG+F+ G+CK GR+++A  M E+M E GL P  V   TLID +C +G+
Sbjct: 175 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 234

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +      R EM  +G+      YN L++     R M  A+D+++EM + G+ PD +TY  
Sbjct: 235 VTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 294

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  +  EM  +G+    +TYT+LI  LSK  R ++A+++    +  G
Sbjct: 295 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 354

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  +ID  C NG+++  F  LKEM     +P  VTYN +M+G C  G+++ A 
Sbjct: 355 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNAD 414

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M   G+ P+ I       TYN L+ G CK+ +    EEL     +KG+  D   Y
Sbjct: 415 MLLNAMLNIGVCPNDI-------TYNILLDGHCKHGKVRDTEELKS---AKGMVSDFGVY 464

Query: 301 FSLI 304
            SLI
Sbjct: 465 TSLI 468



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 163/330 (49%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P++  +   +  M + G+L  A  + ++M   G+ PT VT+NTL+ G C   +L  A
Sbjct: 109 GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNA 168

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            + R  M K GI P   TY   I  L    ++ +A +M +EM E+G+ P+++    LI+ 
Sbjct: 169 NALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDA 228

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+      L  EM  +G++  ++ Y +L+    +   M  A+ + E     G+ PD
Sbjct: 229 HCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPD 288

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +  LIDG C  G ++ A  + +EM    V  D+VTY  L+ G  + G+  +A R+L 
Sbjct: 289 KVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILC 348

Query: 245 QMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQ 276
           +M   G++PD+ ++                            NP  +TYN ++ G C   
Sbjct: 349 EMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLG 408

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   A+ LL  M++ G+ P+D TY  L++G
Sbjct: 409 QMKNADMLLNAMLNIGVCPNDITYNILLDG 438



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 140/253 (55%), Gaps = 7/253 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A++F   ++  G+ P A  +N+L+ +++   K+  A ++  EM  +G+ P  +T+N L++
Sbjct: 98  AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 157

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+  +   A +L   M   GI P + TY + I  L K  R+ +A ++FE    +G+ P
Sbjct: 158 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 217

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + V+   LID HC  G++     L  EM    V  D V YN L++G CR   ++ A  ++
Sbjct: 218 NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIV 277

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M++ G+KPD       ++TY  LI G CK  E D A E+ +EM  +G+  DD TY +L
Sbjct: 278 EEMRKDGLKPD-------KVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTAL 330

Query: 304 IEGIASVDKAAES 316
           I G++   ++ ++
Sbjct: 331 ISGLSKAGRSVDA 343



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           + EA      + + G+ P A  +N L+      G L  A +  DEM+++G+ PT  T+N 
Sbjct: 95  VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 154

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+  +     +  A+ +   M + GI PD  TY   I G C+ G  + A  + +EM  +G
Sbjct: 155 LMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERG 214

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +  T+LI    K+  +    +L      +G+  D+V +NAL++G C   +++ A 
Sbjct: 215 LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAAN 274

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +++EM +  + PD+VTY TL+ G C++G+++ A  +  +M   G+  D +       TY
Sbjct: 275 DIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDV-------TY 327

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            ALI GL K      AE +L EM+  G+ PD+ TY  +I+  
Sbjct: 328 TALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAF 369



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 106/226 (46%), Gaps = 31/226 (13%)

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           +GI      ++ L+N   R  +  +A++ +  ++  G+ P    +  L+  + +  ++  
Sbjct: 76  RGIRVPMPAWSDLMN---RLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLAS 132

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  +F+  L +G+ P +V FN L+ G C   ++  A +L   M +  + PD  TY   + 
Sbjct: 133 ARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQ 192

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------PTR---- 262
           G C+ G++++A  + ++M  RG+ P+ +                          TR    
Sbjct: 193 GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKA 252

Query: 263 --LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             + YNAL+ G C+ ++   A +++ EM   G+ PD  TY +LI+G
Sbjct: 253 DLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDG 298



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 6/139 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD+ TY   +   CK G ++   + L++M+  G  P  VTYN +++G+C+ G 
Sbjct: 350 MMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 409

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M+  G+ P   TYN+L+       K+ + +++      KG+V D   Y  
Sbjct: 410 MKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVSDFGVYTS 466

Query: 121 LINGYCRCGNAKKAFSLHD 139
           LIN + +    K A S HD
Sbjct: 467 LINEFVK---KKSAKSYHD 482


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 181/340 (53%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   VQP+   Y + + G+CK+G + +A  +  Q+ E G++  AVTYN+LIDG C+ G 
Sbjct: 186 MEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       +MV++ + P   T+N+LI  L  E +++EA  +L  M ++G  PD +TYN 
Sbjct: 246 WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNA 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC   N  +A  L + M+ +G++P +L Y  LI    K   + EA  LF+    K 
Sbjct: 306 LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKN 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P I  +N+LIDG C +G I     LL EM      PD VTYN L+   C++G++ EA 
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +L  M ++G+KP+ +++N                            P  L YN LI G 
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           CK +  D A  L +EM  K + PD  +Y SLI+G+ ++ +
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGR 525



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 166/316 (52%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V PD YT+   +  +CKEGR+ EA  +L  M + G  P  VTYN L++GYC++ N
Sbjct: 256 MVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + MVK+G+ P    YN+LI      + + EA  + KE+  K +VP   +YN 
Sbjct: 316 VHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G       L DEM      P ++TY  LI  L K+ R++EA  +    + KG
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +NA++DG+C   N+  A  +   M +  + PD + YN L++G C+   V+EA 
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAI 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M+ + + PD  S       YN+LI GLC        +ELL EM   G +PD  TY
Sbjct: 496 VLFKEMRHKNLIPDIAS-------YNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITY 548

Query: 301 FSLIEGIASV---DKA 313
             L++        DKA
Sbjct: 549 NILLDAFCKTQPFDKA 564



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 161/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD   Y   + G CK   ++EA  + +++    LVPT  +YN+LIDG CN G 
Sbjct: 326 MVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       DEM      P   TYN+LI  L  E +++EA  +L  M +KG+ P+ +TYN 
Sbjct: 386 ISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNA 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYC   N   A  + + M+  G++P +L Y  LI    K   + EA  LF+    K 
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKN 505

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PDI  +N+LIDG C  G I     LL EM      PD +TYN L+   C+    ++A 
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  Q+   GI PD         T +A++  LCK ++  +AE+ L+ ++  G +P+  TY
Sbjct: 566 SLFRQIV-EGIWPDF-------YTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617

Query: 301 FSLIEGIA 308
             LI  + 
Sbjct: 618 TILINALC 625



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 156/309 (50%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   +  + + G    A  +  Q++  G+ P+  T+  LI+ Y ++ +   AFS 
Sbjct: 53  PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K G  P   T+N +I+   +   + +A D  + +  +G + D  TY  LING  +
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K A  L  EM    +QP ++ Y++LI  L K   + +A  L      +G+L D V 
Sbjct: 173 NGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVT 232

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LIDG C+ G  +    LL +M R  V PD+ T+N L+   C++G++ EA+ +L  M 
Sbjct: 233 YNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMS 292

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +RG KPD +       TYNAL++G C  +    A EL   MV +G+ PD   Y  LI+G 
Sbjct: 293 KRGEKPDIV-------TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGY 345

Query: 308 ASVDKAAES 316
                  E+
Sbjct: 346 CKTKMVDEA 354



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 157/309 (50%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S+G+ P   T+   ++    +     A  +L  + ++G  P  VT+NT+I+G+C  G 
Sbjct: 81  LQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGM 140

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F   ++ QG +    TY  LI+ L    ++  A  +L+EM +  + P+ + Y+ 
Sbjct: 141 IFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSA 200

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L  ++  +GI    +TY SLI       R  E  QL    + + 
Sbjct: 201 LIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVREN 260

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   FN LID  C  G I  A  +L  M +    PD VTYN LM G C +  V EAR
Sbjct: 261 VDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAR 320

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M +RG++PD        L YN LI G CK +  D A  L +E+ +K + P   +Y
Sbjct: 321 ELFNRMVKRGLEPD-------VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASY 373

Query: 301 FSLIEGIAS 309
            SLI+G+ +
Sbjct: 374 NSLIDGLCN 382



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 158/312 (50%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QP+  T+ + ++G C  G + +A    + +   G +    TY TLI+G    G ++ A
Sbjct: 120 GYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAA 179

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM K  + P    Y+ LI  L  +  + +A  +  ++GE+GI+ D++TYN LI+G
Sbjct: 180 LHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDG 239

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G  ++   L  +M+ + + P   T+  LI  L K+ R++EA  +      +G  PD
Sbjct: 240 CCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD 299

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +NAL++G+C+  N+  A  L   M +  + PD + YN L+ G C+   V+EA  L  
Sbjct: 300 IVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFK 359

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++  + +        PT  +YN+LI GLC +      ++LL EM      PD  TY  LI
Sbjct: 360 ELCNKNLV-------PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILI 412

Query: 305 EGIASVDKAAES 316
           + +    +  E+
Sbjct: 413 DALCKEGRILEA 424



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 151/317 (47%), Gaps = 15/317 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      PD  TY   +  +CKEGR+ EA  +L  M + G+ P  VTYN ++DGYC + N
Sbjct: 396 MHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNN 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    + MVK G+ P    YN+LI+       + EA  + KEM  K ++PD  +YN 
Sbjct: 456 VNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNS 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G       L DEM   G  P ++TY  L+    K     +A  LF   + +G
Sbjct: 516 LIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQ-IVEG 574

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD    +A++D  C    ++ A   LK +      P+  TY  L++  C+ G   EA 
Sbjct: 575 IWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAM 634

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT------ 294
            LL +M+     PD I       T+  +I  L +  E D AE+L  EM+++G+       
Sbjct: 635 LLLSKMEDNDRPPDAI-------TFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEKSL 687

Query: 295 -PDDNTYFSLIEGIASV 310
               N +F    G  SV
Sbjct: 688 NQSHNVFFPASSGFQSV 704


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 168/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ R  +P+   Y + + G+CK+  + EA  +  +M   G+ P A+TY TLI G+C  G 
Sbjct: 141 IEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQ 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AFS  DEM+ + I P    YN+LI+ L  E  + EA ++L  M ++GI P  +TY+ 
Sbjct: 201 LMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYST 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  + A  +   M+  G+ P + +Y  +I  L K  R+ EA  L    L K 
Sbjct: 261 LMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKN 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD V +N+LIDG C +G I  A +L+ EM       D VTY +L+   C+   +++A 
Sbjct: 321 MVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKAT 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +MK RGI+       PT  TY ALI GLCK      A+EL + ++ KG   D  TY
Sbjct: 381 ALFMKMKERGIQ-------PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTY 433

Query: 301 FSLIEGIA 308
             +I G+ 
Sbjct: 434 TVMISGLC 441



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 169/306 (55%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q D  +YG+ ++G+CK G    A ++L  +++    P  V YNT+IDG C    + 
Sbjct: 108 AQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVN 167

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+    EM  +GI P A TY  LI+   +  +++ A  +L EM  K I P    YNILI
Sbjct: 168 EAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILI 227

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           N  C+ GN K+A +L   M  +GI+P ++TY++L+        +  A Q+F   +  G+ 
Sbjct: 228 NALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVN 287

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +N +I+G C    ++ A +LL+EM    + PD VTYN+L+ G C+ G++  A  L
Sbjct: 288 PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNL 347

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +++M  RG   D +       TY +L+  LCKNQ  D A  L  +M  +GI P   TY +
Sbjct: 348 MNEMHHRGQPADVV-------TYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTA 400

Query: 303 LIEGIA 308
           LI+G+ 
Sbjct: 401 LIDGLC 406



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 172/318 (54%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++ +  T    ++  C  G++  +  +L ++ + G  P  +T NTL+ G C KG 
Sbjct: 36  MEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGE 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ +  F D++V QG      +Y  L++ L    +   A  +L+ + ++   P+ + YN 
Sbjct: 96  VKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNT 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+     +A+ L+ EM  +GI P  +TYT+LI+      +++ A  L +  + K 
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKN 215

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P + ++N LI+  C  GN++ A +LL  M +  + P  VTY+TLM G C  G+V+ A+
Sbjct: 216 INPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAK 275

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   M + G+       NP   +YN +I GLCK +  D A  LLREM+ K + PD  TY
Sbjct: 276 QIFHAMVQMGV-------NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTY 328

Query: 301 FSLIEGIASVDKAAESSN 318
            SLI+G+    +   + N
Sbjct: 329 NSLIDGLCKSGRITSALN 346



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 167/328 (50%), Gaps = 46/328 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P  Y Y   ++ +CKEG ++EA  +L  M + G+ P  VTY+TL+DGYC  G 
Sbjct: 211 MILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGE 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV+ G+ P   +YN++I+ L   +++ EA ++L+EM  K +VPD++TYN 
Sbjct: 271 VQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNS 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG----------------------------------- 145
           LI+G C+ G    A +L +EM H+G                                   
Sbjct: 331 LIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 390

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           IQPTM TYT+LI  L K  R+  A +LF++ L KG   D+  +  +I G C  G  + A 
Sbjct: 391 IQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEAL 450

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           ++  +M+     P+ VT+  ++     + + ++A +LL +M  +G+           L  
Sbjct: 451 AIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL-----------LVL 499

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGI 293
           +  +  +    E D AE+LL EM++KG+
Sbjct: 500 DFKVADVFVQNENDKAEKLLHEMIAKGL 527



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 31/213 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+ TY S + G+CK GR+  A  ++ +M   G     VTY +L+D  C   N
Sbjct: 316 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 375

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   +M ++GI PT  TY  LI  L    ++  A ++ + +  KG   D  TY +
Sbjct: 376 LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTV 435

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK------------------ 162
           +I+G C+ G   +A ++  +M   G  P  +T+  +I  L +                  
Sbjct: 436 MISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 495

Query: 163 -------------QNRMIEADQLFENFLAKGML 182
                        QN   +A++L    +AKG+L
Sbjct: 496 LLVLDFKVADVFVQNENDKAEKLLHEMIAKGLL 528


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++PD +TY S +S +C  GR  +ASR+L  M E  + P  VT+N+LID +  +G 
Sbjct: 282 METKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGK 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+++ I P   TYN LI+   M  ++ EA  +   M  K  +PD +TYN 
Sbjct: 342 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++   L  EM  +G+    +TY +LI  L +      A ++F+  ++ G
Sbjct: 402 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C  G +E+A  + + + + K+ P+  TYN ++ G C+ GKVE+  
Sbjct: 462 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGW 521

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ I        Y  +I G C+    + A+ L REM   G  PD   Y
Sbjct: 522 DLFCSLSLKGVKPNVI-------IYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCY 574

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 575 NTLIRARLRDGDKAASA 591



 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 175/312 (56%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ T+ + + G+    +  EA  ++++M   G  P   TY T+++G C +G+
Sbjct: 177 MVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGD 236

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A S   +M K  I      YN +I  L   + M +A D+  +M  KGI PD  TYN 
Sbjct: 237 IDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNS 296

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L  +MI + I P ++T+ SLI   +K+ ++IEA++LF+  + + 
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 356

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +N+LI+G C +  ++ A  +   M      PD VTYNTL+ G C+  +VEE  
Sbjct: 357 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGM 416

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RG+  + +       TYN LIQGL +  + D+A+++ ++MVS G+ PD  TY
Sbjct: 417 ELFREMSQRGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITY 469

Query: 301 FSLIEGIASVDK 312
             L++G+    K
Sbjct: 470 SILLDGLCKYGK 481



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 178/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG QPD +TYG+ V+G+CK G ++ A  +L++M++  +    V YNT+IDG C   +
Sbjct: 212 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKH 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   ++M  +GI P   TYN LI  L    +  +A  +L +M E+ I P+ +T+N 
Sbjct: 272 MDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNS 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L DEMI + I P ++TY SLI      +R+ EA Q+F   ++K 
Sbjct: 332 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+V +N LI G C    +E    L +EM +  +  + VTYNTL+ G  + G  + A+
Sbjct: 392 CLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 451

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           ++  +M   G+ PD I+++                            P   TYN +I+G+
Sbjct: 452 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGM 511

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + +   +L   +  KG+ P+   Y ++I G  
Sbjct: 512 CKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 547



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 169/315 (53%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  + YTY   ++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 107 MQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+N LIH L +  K  EA  ++  M  +G  PD  TY  
Sbjct: 167 ISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   A SL  +M    I+  ++ Y ++I  L K   M +A  LF     KG
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N+LI   C  G    A  LL +M   K++P+ VT+N+L+    ++GK+ EA 
Sbjct: 287 IKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAE 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M +R I P+ +       TYN+LI G C +   D A+++   MVSK   PD  TY
Sbjct: 347 KLFDEMIQRSIDPNIV-------TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 399

Query: 301 FSLIEGIASVDKAAE 315
            +LI+G     +  E
Sbjct: 400 NTLIKGFCKAKRVEE 414



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 158/294 (53%), Gaps = 7/294 (2%)

Query: 23  EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST 82
           E +L++A  +  +M ++   P+ + ++ L+         ++  S  ++M   GI     T
Sbjct: 59  ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 118

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y++L++      ++  A  +L +M + G  PD +T + L+NGYC      +A +L D+M+
Sbjct: 119 YSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMV 178

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             G +P  +T+ +LI  L   N+  EA  L +  +A+G  PD+  +  +++G C  G+I+
Sbjct: 179 EMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 238

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A SLLK+M++ K+  + V YNT++ G C+   +++A  L ++M+ +GIKPD        
Sbjct: 239 LALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD-------V 291

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TYN+LI  LC       A  LL +M+ + I P+  T+ SLI+  A   K  E+
Sbjct: 292 FTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEA 345



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 129/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P+  TY S ++G C   RL+EA ++   M     +P  VTYNTLI G+C    
Sbjct: 352 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKR 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM ++G++    TYN LI  L        A  + K+M   G+ PD ITY+I
Sbjct: 412 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 471

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  +KA  + + +    ++P + TY  +I  + K  ++ +   LF +   KG
Sbjct: 472 LLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++++  +I G C  G  E A +L +EM      PD   YNTL+  R R G    + 
Sbjct: 532 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 591

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+  G   D
Sbjct: 592 ELIKEMRSCGFVGD 605



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 7/257 (2%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   EMVK    P+   ++ L+  +    K      + ++M   GI  +  TY+I
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+N +CR      A ++  +M+  G +P ++T +SL+       R+ EA  L +  +  G
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMG 181

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V FN LI G   +     A +L+  M      PD  TY T+++G C++G ++ A 
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 241

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M++  I+ + +        YN +I GLCK +  D A +L  +M +KGI PD  TY
Sbjct: 242 SLLKKMEKGKIEANVV-------IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 294

Query: 301 FSLIEGIASVDKAAESS 317
            SLI  + +  + +++S
Sbjct: 295 NSLISCLCNYGRWSDAS 311



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + + G+ + G  + A ++ ++M  +G+ P  +TY+ L+DG C  G 
Sbjct: 422 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 481

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    + + K  + P   TYN++I  +    K+ +  D+   +  KG+ P+ I Y  
Sbjct: 482 LEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 541

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR G  ++A +L  EM   G  P    Y +LI    +      + +L +   + G
Sbjct: 542 MISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCG 601

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
            + D    + +I+    +G +E+++
Sbjct: 602 FVGDASTISMVIN-MLHDGRLEKSY 625


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++ D  TY S + G+C +G+ ++ ++ML +M    ++P  VT++ LID +  +G 
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM+ +GI P   TYN LI     E  + EA+ M   M  KG  PD +TY+I
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+         L  E+  KG+ P  +TY +L+    +  ++  A +LF+  +++G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +  L+DG C NG + +A  + ++M + ++      YN ++HG C   KV++A 
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD +       TYN +I GLCK      A+ L R+M   G TPDD TY
Sbjct: 511 SLFCSLSDKGVKPDVV-------TYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY 563

Query: 301 FSLIEG 306
             LI  
Sbjct: 564 NILIRA 569



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 181/342 (52%), Gaps = 31/342 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + V+G C EGR+ EA  ++++M E    P  VT +TLI+G C KG +  A
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV+ G  P   TY  +++ L        A D+ ++M E+ I    + Y+I+I+ 
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   A SL +EM  KGI+  ++TY+SLI  L    +  +  ++    + + ++PD
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ALID     G +  A  L  EM    + PD +TYN+L+ G C++  + EA ++ D
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 374

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  +G +PD ++++                            P  +TYN L+ G C++ 
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSG 434

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           + + A+EL +EMVS+G+ P   TY  L++G+     ++KA E
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 177/344 (51%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TYG  ++ +CK G    A  +  +M+E  +  + V Y+ +ID  C  G+
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  +EM  +GI     TY+ LI  L  + K  +   ML+EM  + I+PD +T++ 
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L++EMI +GI P  +TY SLI    K+N + EA+Q+F+  ++KG
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV ++ LI+ +C    ++    L +E+    + P+ +TYNTL+ G C+ GK+  A+
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440

Query: 241 RLLDQMKRRGIKPDHISF-----------------------NPTRLT-----YNALIQGL 272
            L  +M  RG+ P  +++                         +R+T     YN +I G+
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C   + D A  L   +  KG+ PD  TY  +I G+      +E+
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 164/304 (53%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++ D YT    ++  C++ +L  A  +L +  + G  P  +T++TL++G+C +G 
Sbjct: 96  MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D MV+    P   T + LI+ L ++ ++ EA  ++  M E G  PD +TY  
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ GN+  A  L  +M  + I+ +++ Y+ +I  L K     +A  LF     KG
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+V +++LI G C +G  +    +L+EM    + PD VT++ L+    ++GK+ EA+
Sbjct: 276 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAK 335

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M  RGI PD I       TYN+LI G CK      A ++   MVSKG  PD  TY
Sbjct: 336 ELYNEMITRGIAPDTI-------TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTY 388

Query: 301 FSLI 304
             LI
Sbjct: 389 SILI 392



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 130/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ PD+ TY S + G CKE  L EA++M + M   G  P  VTY+ LI+ YC    
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       E+  +G++P   TYN L+       K+  A ++ +EM  +G+ P  +TY I
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G   KA  + ++M    +   +  Y  +I  +   +++ +A  LF +   KG
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I G C  G++  A  L ++M      PD+ TYN L+        +  + 
Sbjct: 521 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSV 580

Query: 241 RLLDQMKRRGIKPD 254
            L+++MK  G   D
Sbjct: 581 ELIEEMKVCGFSAD 594



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 148/303 (48%), Gaps = 11/303 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +    S + +  + +      + M+ NG+     T   +I+ YC K  L  AFS 
Sbjct: 68  PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 127

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
                K G  P   T++ L++   +E ++ EA  ++  M E    PD +T + LING C 
Sbjct: 128 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCL 187

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  L D M+  G QP  +TY  ++  L K      A  LF     + +   +V 
Sbjct: 188 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ +ID  C +G+ + A SL  EM+   +  D VTY++L+ G C  GK ++  ++L +M 
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIE 305
            R I PD +       T++ALI    K  EG L  A+EL  EM+++GI PD  TY SLI+
Sbjct: 308 GRNIIPDVV-------TFSALIDVFVK--EGKLLEAKELYNEMITRGIAPDTITYNSLID 358

Query: 306 GIA 308
           G  
Sbjct: 359 GFC 361



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 149/292 (51%), Gaps = 7/292 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           ++ +A  + E M ++  +PT + +N L          ++   F   M   GI     T  
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           ++I+    ++K++ A  +L    + G  PD+IT++ L+NG+C  G   +A +L D M+  
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
             +P ++T ++LI  L  + R+ EA  L +  +  G  PD V +  +++  C +GN   A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L ++M+   +    V Y+ ++   C+ G  ++A  L ++M+ +GIK D +       T
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV-------T 282

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           Y++LI GLC + + D   ++LREM+ + I PD  T+ +LI+      K  E+
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G+ P++ TY + V G C+ G+L  A  + ++M   G+ P+ VTY  L+DG C+ G 
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 470

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    ++M K  +      YN++IH +    K+ +A  +   + +KG+ PD +TYN+
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 530

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C+ G+  +A  L  +M   G  P   TY  LI      + +I + +L E     G
Sbjct: 531 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 590

Query: 181 MLPDIVMFNALID 193
              D      +ID
Sbjct: 591 FSADSSTIKMVID 603



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 28/247 (11%)

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
           +++ K+ +A D+ + M +   +P  I +N L +   R             M   GI+  M
Sbjct: 46  IVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDM 105

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            T T +I    ++ +++ A  +       G  PD + F+ L++G C  G +  A +L+  
Sbjct: 106 YTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDR 165

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP---------- 260
           M  MK  PD VT +TL++G C +G+V EA  L+D+M   G +PD +++ P          
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225

Query: 261 ------------------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
                             + + Y+ +I  LCK+   D A  L  EM  KGI  D  TY S
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 285

Query: 303 LIEGIAS 309
           LI G+ +
Sbjct: 286 LIGGLCN 292



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 82/163 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRGV P   TYG  + G+C  G L +A  + E+M+++ +      YN +I G CN   
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+S    +  +G+ P   TYN++I  L  +  + EAD + ++M E G  PD  TYNI
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 565

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           LI  +        +  L +EM   G      T   +I +LS +
Sbjct: 566 LIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDR 608



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +GV+PD  TY   + G+CK+G L EA  +  +MKE+G  P   TYN LI  +     
Sbjct: 516 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 575

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           L  +    +EM   G    +ST  ++I ++L +R++
Sbjct: 576 LISSVELIEEMKVCGFSADSSTIKMVI-DMLSDRRL 610


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 176/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+P+  TY S ++ +CK GR  EA ++ + M + GL P   TY TL+ GY  KG 
Sbjct: 297 MRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGA 356

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    +  D MV+ GI P    +N+LI     + K+ +A  +  +M + G+ P+ + Y  
Sbjct: 357 LVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGT 416

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+ G+   A    ++MI +G+ P ++ YTSLI  L   ++  +A++L    L +G
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG 476

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + FN++ID HC  G +  +  L   M R+ V PD +TYNTL+ G C  GK++EA 
Sbjct: 477 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 536

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TY  LI G C+    D A  L +EMVS G++P+  TY
Sbjct: 537 KLLASMVSVGVKPDIV-------TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 589

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 590 NIILQGLFHTRRTAAA 605



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 177/315 (56%), Gaps = 10/315 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M   G  PD ++Y + + G+C E R +EA  +L  M ++   G  P  V+YNT+++G+  
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G+ + A+S   EM+ +GI+P   TY+ +I  L   + M +A ++L  M + G++PD +T
Sbjct: 214 EGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN +++GYC  G  K+A     +M   G++P ++TY+SL+  L K  R  EA ++F++  
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ PDI  +  L+ G+ T G +    +LL  M R  + PD   +N L+    +Q KV+
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  +  +M++ G+       NP  + Y  +I  LCK+   D A     +M+ +G+TP+ 
Sbjct: 394 QAMLVFSKMRQHGL-------NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446

Query: 298 NTYFSLIEGIASVDK 312
             Y SLI G+ + DK
Sbjct: 447 IVYTSLIHGLCTCDK 461



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 173/347 (49%), Gaps = 42/347 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY S ++ +CK   +++A  +L  M +NG++P  +TYN+++ GYC+ G 
Sbjct: 227 MLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 286

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +M   G+ P   TY+ L++ L    +  EA  +   M ++G+ PD  TY  
Sbjct: 287 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 346

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ--------------------------------- 147
           L+ GY   G   +  +L D M+  GIQ                                 
Sbjct: 347 LLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHG 406

Query: 148 --PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P ++ Y ++I VL K   + +A   FE  + +G+ P+I+++ +LI G CT    ++A 
Sbjct: 407 LNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAE 466

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+ EM    +  + + +N+++   C++G+V E+ +L D M R G+KPD I       TY
Sbjct: 467 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII-------TY 519

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           N LI G C   + D A +LL  MVS G+ PD  TY +LI G   V +
Sbjct: 520 NTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSR 566



 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 171/318 (53%), Gaps = 17/318 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P  +TY   +   C+ GRL+     L  + + G    A+T+  L+ G C   + +  M
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
               R  M + G +P   +YN L+  L  E +  EA ++L  M +    G  PD ++YN 
Sbjct: 148 DIVLR-RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG+ + G++ KA+S + EM+ +GI P ++TY+S+I  L K   M +A ++    +  G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N+++ G+C++G  + A   LK+M    V P+ VTY++LM+  C+ G+  EAR
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           ++ D M +RG++PD         TY  L+QG     +G L E   LL  MV  GI PD +
Sbjct: 327 KIFDSMTKRGLEPDIA-------TYRTLLQGYA--TKGALVEMHALLDLMVRNGIQPDHH 377

Query: 299 TYFSLIEGIASVDKAAES 316
            +  LI   A  +K  ++
Sbjct: 378 VFNILICAYAKQEKVDQA 395



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD + +   +    K+ ++++A  +  +M+++GL P  V Y T+ID  C  G+
Sbjct: 367 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGS 426

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + ++M+ +G+ P    Y  LIH L    K  +A++++ EM ++GI  ++I +N 
Sbjct: 427 VDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY +LI       +M EA +L  + ++ G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +  LI+G+C    ++ A +L KEM    V P+ +TYN ++ G     +   A+
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   + + G + +         TYN ++ GLCKN   D A  + + +    +  +  T+
Sbjct: 607 ELYVSITKSGTQLE-------LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 659

Query: 301 FSLIEGIASVDKAAESSN 318
             +I  +    +  E+ +
Sbjct: 660 NIMIGALLKCGRMDEAKD 677



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+   Y S + G+C   + ++A  ++ +M + G+    + +N++ID +C +G 
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  +    D MV+ G+ P   TYN LI    +  KM EA  +L  M   G+ PD +TY  
Sbjct: 497 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGT 556

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCR      A +L  EM+  G+ P ++TY  ++  L    R   A +L+ +    G
Sbjct: 557 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              ++  +N ++ G C N   + A  + + +    +  +  T+N ++    + G+++EA+
Sbjct: 617 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L       G+ PD         TY+ + + L +    +  ++L   M   G + D    
Sbjct: 677 DLFAAHSANGLVPD-------VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRML 729

Query: 301 FSLI 304
            S++
Sbjct: 730 NSIV 733



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 117/235 (49%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA+++L  M   G+ P  VTY TLI+GYC    ++ A
Sbjct: 511 GVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDA 570

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EMV  G+ P   TYN+++  L   R+   A ++   + + G   +  TYNI+++G
Sbjct: 571 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 630

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  RM EA  LF    A G++PD
Sbjct: 631 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 690

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  ++ + +     G++E    L   M+      D    N+++    ++G +  A
Sbjct: 691 VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 104/214 (48%), Gaps = 11/214 (5%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + P   TY ILI   CR G     F+    ++ KG +   +T+T L+  L    R 
Sbjct: 84  GAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRT 143

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DR-MKVHPDEVT 222
            +A D +       G +PD+  +N L+ G C     + A  LL  M  DR     PD V+
Sbjct: 144 SDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 203

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           YNT+++G  ++G  ++A     +M  RGI PD +       TY+++I  LCK Q  D A 
Sbjct: 204 YNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV-------TYSSIIAALCKAQAMDKAM 256

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E+L  MV  G+ PD  TY S++ G  S  +  E+
Sbjct: 257 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 290



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 103/212 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TYG+ ++G C+  R+++A  + ++M  +G+ P  +TYN ++ G  +   
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 601

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      + K G     STYN+++H L       EA  M + +    +  ++ T+NI
Sbjct: 602 TAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 661

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    +CG   +A  L       G+ P + TY+ +   L +Q  + E D LF +    G
Sbjct: 662 MIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG 721

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
              D  M N+++      G+I RA + L  +D
Sbjct: 722 CSADSRMLNSIVRKLLQRGDITRAGTYLFMID 753



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +Q ++ T+   +  + K GR++EA  +      NGLVP   TY+ + +    +G+LE   
Sbjct: 652 LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELD 711

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                M + G    +   N ++ +LL    +  A   L  + EK    ++ T + L+
Sbjct: 712 DLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLL 768


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 181/316 (57%), Gaps = 9/316 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++   PD  TY + V  +CK G+ +EA  ML +M   G  P  VT++TLIDG C  G+ E
Sbjct: 119 AKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEE 178

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYNIL 121
            AF   ++++++G+  + + +  +I  L  +   VE A  +L  +  KG  P  + +N++
Sbjct: 179 QAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLV 238

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+C+  +   A+ L + MI KG  P + T+T LI  L K NR+ EA QL E  +  G 
Sbjct: 239 INGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGC 298

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P++V ++ +I+G C  G ++ A+ L + M+R    P+ VT+N L+ G C+  ++EEAR+
Sbjct: 299 SPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQ 358

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN-TY 300
           L  +M+  G  PD I       TYN+LI GLCK+ + D A +L + +   G++  +  TY
Sbjct: 359 LYHRMRETGCAPDII-------TYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTY 411

Query: 301 FSLIEGIASVDKAAES 316
            +L  G A++ + A++
Sbjct: 412 STLFHGYAALGRMADA 427



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 176/343 (51%), Gaps = 33/343 (9%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +R   P+ +TYG  + G    G L+ A ++LE+MK +G    AV + TL+ G C+ G + 
Sbjct: 50  ARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVV 109

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M K    P   TY  L+H L    K  EA  ML+EM  +G  PD++T++ LI
Sbjct: 110 EALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLI 168

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE-ADQLFENFLAKGM 181
           +G C+ G+ ++AF + +++I +G+  +   + ++I  L  +   +E A ++    +AKG 
Sbjct: 169 DGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGF 228

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P ++MFN +I+G C   +++ A+ LL+ M      P+  T+  L+ G C+  +V EA++
Sbjct: 229 TPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQ 288

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           LL++M   G  P+ ++++                            P  +T+N LI GLC
Sbjct: 289 LLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLC 348

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           K +  + A +L   M   G  PD  TY SLI+G+     VD+A
Sbjct: 349 KAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEA 391



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD+ T+ + + G+CK G  E+A R+LE + + G+  +   + T+I   CNK N
Sbjct: 152 MVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYN 211

Query: 61  -LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +E+A      ++ +G  PT   +NL+I+     + +  A  +L+ M EKG VP+  T+ 
Sbjct: 212 SVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFT 271

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ILI G C+     +A  L ++M+  G  P ++TY+++I  L KQ ++ +A +LF+    +
Sbjct: 272 ILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERR 331

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
              P++V  N LIDG C    IE A  L   M      PD +TYN+L+ G C+  +V+EA
Sbjct: 332 NCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEA 391

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L   +   G+           +TY+ L  G         A  +   +V KG +PD  T
Sbjct: 392 FQLFQTIPESGVSA------ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLAT 445

Query: 300 YFSLI 304
           Y SLI
Sbjct: 446 YTSLI 450



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 168/354 (47%), Gaps = 40/354 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+ +T+   ++G+CK  R+ EA ++LE+M   G  P  VTY+T+I+G C +G 
Sbjct: 258 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQ 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+     M ++   P   T+N+LI  L   +++ EA  +   M E G  PD ITYN 
Sbjct: 318 VDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 377

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPT-MLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C+     +AF L   +   G+     +TY++L    +   RM +A ++F   + K
Sbjct: 378 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 437

Query: 180 GMLPDIVMFNALIDGHCTN----------------------------------GN-IERA 204
           G  PD+  + +LI  +C                                    GN  ERA
Sbjct: 438 GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 497

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L   M       D + YN ++ G  R  K ++A  +L+Q+    I      FNP+   
Sbjct: 498 IQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQV----IDKRDRKFNPSSSA 553

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            +AL++ LC+  + D A++LL +M  +G     ++Y  L+ G++ + +  E++ 
Sbjct: 554 VDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQ 607



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 164/321 (51%), Gaps = 13/321 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R   P+  T+   + G+CK  R+EEA ++  +M+E G  P  +TYN+LIDG C    
Sbjct: 328 MERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQ 387

Query: 61  LEMAFSFRDEMVKQGI-MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           ++ AF     + + G+    A TY+ L H      +M +A  +   + +KG  PD  TY 
Sbjct: 388 VDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYT 447

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI  YC+   A +   L +EM  KG  P + T ++++  L + N    A QLF++  A+
Sbjct: 448 SLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAAR 507

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEM----DRMKVHPDEVTYNTLMHGRCRQGK 235
           G   D +++N +++G       ++A ++L+++    DR K +P     + L+   C+ GK
Sbjct: 508 GCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDR-KFNPSSSAVDALVESLCQVGK 566

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            ++A++LL +M  RG       F     +YN L+ GL + Q  D A ++   MVS G  P
Sbjct: 567 TDDAKQLLHKMSERG-------FAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAP 619

Query: 296 DDNTYFSLIEGIASVDKAAES 316
           + +T   +I  + S  K  ++
Sbjct: 620 EISTVNVVISWLCSAAKVDDA 640



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 151/311 (48%), Gaps = 8/311 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G  P    +   ++G CK   L+ A ++LE M E G VP   T+  LI G C    + 
Sbjct: 225 AKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVG 284

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++MV  G  P   TY+ +I+ L  + ++ +A ++ + M  +   P+ +T+NILI
Sbjct: 285 EAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 344

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM- 181
           +G C+    ++A  L+  M   G  P ++TY SLI  L K  ++ EA QLF+     G+ 
Sbjct: 345 DGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS 404

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             + V ++ L  G+   G +  A  +   +      PD  TY +L+   C+  +  E   
Sbjct: 405 AANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVE 464

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L+++M  +G       F P   T +A++ GL +    + A +L   M ++G T D   Y 
Sbjct: 465 LVEEMASKG-------FPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYN 517

Query: 302 SLIEGIASVDK 312
            ++EG+A   K
Sbjct: 518 LVVEGMARASK 528



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 133/270 (49%), Gaps = 11/270 (4%)

Query: 49  NTLIDGYCNKGNLEMAFS-FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
           N  +D  C     + A + FR+ M +   MP   TY +LI        +  A  +L+EM 
Sbjct: 26  NCALDMLCRLNRRQEALALFRNAMARI-CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMK 84

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
             G   +++ +  L+ G C  G   +A   H   + K   P ++TYT+L+  L K  +  
Sbjct: 85  SSGFEGNAVVHTTLMKGLCDAGRVVEALE-HFRAMAKDCAPDVMTYTALVHALCKAGKFD 143

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           EA  +    +A+G  PD V F+ LIDG C  G+ E+AF +L+++ +  +   +  + T++
Sbjct: 144 EAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETII 203

Query: 228 HGRC-RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
              C +   VE A ++L  +  +G       F PT L +N +I G CK ++ D A +LL 
Sbjct: 204 QRLCNKYNSVELASKVLGVVIAKG-------FTPTVLMFNLVINGFCKAKDLDSAYKLLE 256

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            M+ KG  P+  T+  LI G+   ++  E+
Sbjct: 257 VMIEKGCVPNVFTFTILITGLCKANRVGEA 286



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 74/328 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGL-VPTAVTYNTLIDGYCNKG 59
           M+  G  PD  TY S + G+CK  +++EA ++ + + E+G+    AVTY+TL  GY   G
Sbjct: 363 MRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALG 422

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHEL----------------------------- 90
            +  A      +V +G  P  +TY  LI E                              
Sbjct: 423 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLS 482

Query: 91  -----LMERKMVE-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                L E    E A  +   M  +G   D++ YN+++ G  R     KA ++ +++I K
Sbjct: 483 AVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDK 542

Query: 145 --------------------------------------GIQPTMLTYTSLIFVLSKQNRM 166
                                                 G    + +Y  L+  LS+  R 
Sbjct: 543 RDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRW 602

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            EA Q+FE  ++ G  P+I   N +I   C+   ++ A+ L++ M ++   PD  T NTL
Sbjct: 603 DEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTL 662

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           + G C+ G+ + AR+LL++M   G++P+
Sbjct: 663 IGGYCKSGRADLARKLLEEMTEAGLEPN 690



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 3/229 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  P   T  + + G+ +    E A ++ + M   G    A+ YN +++G      
Sbjct: 469 MASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASK 528

Query: 61  LEMAFSFRDEMVKQ---GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
            + A +  ++++ +      P++S  + L+  L    K  +A  +L +M E+G      +
Sbjct: 529 HDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSS 588

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN L++G  R     +A  + + M+  G  P + T   +I  L    ++ +A +L +   
Sbjct: 589 YNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMS 648

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             G  PDI   N LI G+C +G  + A  LL+EM    + P++ T++ L
Sbjct: 649 KLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++ D  TY S + G+C +G+ ++ ++ML +M    ++P  VT++ LID +  +G 
Sbjct: 300 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 359

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM+ +GI P   TYN LI     E  + EA+ M   M  KG  PD +TY+I
Sbjct: 360 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 419

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+         L  E+  KG+ P  +TY +L+    +  ++  A +LF+  +++G
Sbjct: 420 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 479

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +  L+DG C NG + +A  + ++M + ++      YN ++HG C   KV++A 
Sbjct: 480 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 539

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD +       TYN +I GLCK      A+ L R+M   G TPDD TY
Sbjct: 540 SLFCSLSDKGVKPDVV-------TYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY 592

Query: 301 FSLIEG 306
             LI  
Sbjct: 593 NILIRA 598



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 181/342 (52%), Gaps = 31/342 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + V+G C EGR+ EA  ++++M E    P  VT +TLI+G C KG +  A
Sbjct: 164 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 223

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV+ G  P   TY  +++ L        A D+ ++M E+ I    + Y+I+I+ 
Sbjct: 224 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 283

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   A SL +EM  KGI+  ++TY+SLI  L    +  +  ++    + + ++PD
Sbjct: 284 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 343

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ALID     G +  A  L  EM    + PD +TYN+L+ G C++  + EA ++ D
Sbjct: 344 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 403

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  +G +PD ++++                            P  +TYN L+ G C++ 
Sbjct: 404 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSG 463

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           + + A+EL +EMVS+G+ P   TY  L++G+     ++KA E
Sbjct: 464 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 505



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 177/344 (51%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TYG  ++ +CK G    A  +  +M+E  +  + V Y+ +ID  C  G+
Sbjct: 230 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 289

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  +EM  +GI     TY+ LI  L  + K  +   ML+EM  + I+PD +T++ 
Sbjct: 290 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 349

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L++EMI +GI P  +TY SLI    K+N + EA+Q+F+  ++KG
Sbjct: 350 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 409

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV ++ LI+ +C    ++    L +E+    + P+ +TYNTL+ G C+ GK+  A+
Sbjct: 410 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 469

Query: 241 RLLDQMKRRGIKPDHISF-----------------------NPTRLT-----YNALIQGL 272
            L  +M  RG+ P  +++                         +R+T     YN +I G+
Sbjct: 470 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 529

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C   + D A  L   +  KG+ PD  TY  +I G+      +E+
Sbjct: 530 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 573



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 164/304 (53%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++ D YT    ++  C++ +L  A  +L +  + G  P  +T++TL++G+C +G 
Sbjct: 125 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 184

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D MV+    P   T + LI+ L ++ ++ EA  ++  M E G  PD +TY  
Sbjct: 185 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 244

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ GN+  A  L  +M  + I+ +++ Y+ +I  L K     +A  LF     KG
Sbjct: 245 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 304

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+V +++LI G C +G  +    +L+EM    + PD VT++ L+    ++GK+ EA+
Sbjct: 305 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAK 364

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M  RGI PD I       TYN+LI G CK      A ++   MVSKG  PD  TY
Sbjct: 365 ELYNEMITRGIAPDTI-------TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTY 417

Query: 301 FSLI 304
             LI
Sbjct: 418 SILI 421



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 130/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ PD+ TY S + G CKE  L EA++M + M   G  P  VTY+ LI+ YC    
Sbjct: 370 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 429

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       E+  +G++P   TYN L+       K+  A ++ +EM  +G+ P  +TY I
Sbjct: 430 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 489

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G   KA  + ++M    +   +  Y  +I  +   +++ +A  LF +   KG
Sbjct: 490 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 549

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I G C  G++  A  L ++M      PD+ TYN L+        +  + 
Sbjct: 550 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSV 609

Query: 241 RLLDQMKRRGIKPD 254
            L+++MK  G   D
Sbjct: 610 ELIEEMKVCGFSAD 623



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 148/303 (48%), Gaps = 11/303 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +    S + +  + +      + M+ NG+     T   +I+ YC K  L  AFS 
Sbjct: 97  PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 156

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
                K G  P   T++ L++   +E ++ EA  ++  M E    PD +T + LING C 
Sbjct: 157 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCL 216

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  L D M+  G QP  +TY  ++  L K      A  LF     + +   +V 
Sbjct: 217 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 276

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ +ID  C +G+ + A SL  EM+   +  D VTY++L+ G C  GK ++  ++L +M 
Sbjct: 277 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 336

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIE 305
            R I PD +       T++ALI    K  EG L  A+EL  EM+++GI PD  TY SLI+
Sbjct: 337 GRNIIPDVV-------TFSALIDVFVK--EGKLLEAKELYNEMITRGIAPDTITYNSLID 387

Query: 306 GIA 308
           G  
Sbjct: 388 GFC 390



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 149/292 (51%), Gaps = 7/292 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           ++ +A  + E M ++  +PT + +N L          ++   F   M   GI     T  
Sbjct: 79  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 138

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           ++I+    ++K++ A  +L    + G  PD+IT++ L+NG+C  G   +A +L D M+  
Sbjct: 139 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 198

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
             +P ++T ++LI  L  + R+ EA  L +  +  G  PD V +  +++  C +GN   A
Sbjct: 199 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 258

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L ++M+   +    V Y+ ++   C+ G  ++A  L ++M+ +GIK D +       T
Sbjct: 259 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV-------T 311

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           Y++LI GLC + + D   ++LREM+ + I PD  T+ +LI+      K  E+
Sbjct: 312 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 363



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G+ P++ TY + V G C+ G+L  A  + ++M   G+ P+ VTY  L+DG C+ G 
Sbjct: 440 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 499

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    ++M K  +      YN++IH +    K+ +A  +   + +KG+ PD +TYN+
Sbjct: 500 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 559

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C+ G+  +A  L  +M   G  P   TY  LI      + +I + +L E     G
Sbjct: 560 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 619

Query: 181 MLPDIVMFNALID 193
              D      +ID
Sbjct: 620 FSADSSTIKMVID 632



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 28/247 (11%)

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
           +++ K+ +A D+ + M +   +P  I +N L +   R             M   GI+  M
Sbjct: 75  IVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDM 134

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            T T +I    ++ +++ A  +       G  PD + F+ L++G C  G +  A +L+  
Sbjct: 135 YTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDR 194

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP---------- 260
           M  MK  PD VT +TL++G C +G+V EA  L+D+M   G +PD +++ P          
Sbjct: 195 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 254

Query: 261 ------------------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
                             + + Y+ +I  LCK+   D A  L  EM  KGI  D  TY S
Sbjct: 255 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 314

Query: 303 LIEGIAS 309
           LI G+ +
Sbjct: 315 LIGGLCN 321



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 82/163 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRGV P   TYG  + G+C  G L +A  + E+M+++ +      YN +I G CN   
Sbjct: 475 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 534

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+S    +  +G+ P   TYN++I  L  +  + EAD + ++M E G  PD  TYNI
Sbjct: 535 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 594

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           LI  +        +  L +EM   G      T   +I +LS +
Sbjct: 595 LIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDR 637



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +GV+PD  TY   + G+CK+G L EA  +  +MKE+G  P   TYN LI  +     
Sbjct: 545 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 604

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           L  +    +EM   G    +ST  ++I ++L +R++
Sbjct: 605 LISSVELIEEMKVCGFSADSSTIKMVI-DMLSDRRL 639


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 184/347 (53%), Gaps = 32/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK G    A R+L  M++    P  V Y ++ID  C    
Sbjct: 164 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 223

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   EM+ QGI P+  TYN LIH L  L E K V A  +L EM    I+P+ + +
Sbjct: 224 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA--LLNEMVNSKIMPNVVIF 281

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + +++  C+ G   +A  + D MI +G++P ++TY +L+     ++ M EA ++F+  + 
Sbjct: 282 STVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVC 341

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG  PD+V ++ LI+G+C    IE+A  L +EM R ++ P+ VTY+TLMHG C  G++++
Sbjct: 342 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQD 401

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  L  +M  RG  PD +S+                            +P    Y  +I 
Sbjct: 402 AIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 461

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           G+C+  E + A +L   + SKG+ P+  TY  +I G+      AE+S
Sbjct: 462 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 508



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 170/305 (55%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + P+   + + V  +CKEG++ EA  +++ M + G+ P  VTYN L+DG+C +  
Sbjct: 269 MVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSE 328

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D MV +G  P   +Y+ LI+     +++ +A  + +EM  K ++P+++TY+ 
Sbjct: 329 MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 388

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  + A +L  EM+ +G  P  ++Y  L+  L K  R+ EA  L +      
Sbjct: 389 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PDI ++  +IDG C  G +E A  L   +    +HP+  TY  +++G C+QG + EA 
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 508

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +MKR+G       ++P   TYN + +G  +N E     +LL+EM+++G + D +T 
Sbjct: 509 KLFGEMKRKG-------YSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTS 561

Query: 301 FSLIE 305
             L+E
Sbjct: 562 TVLVE 566



 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 163/308 (52%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P  +TY S +  +C     +  + +L +M  + ++P  V ++T++D  C +G 
Sbjct: 234 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M+K+G+ P   TYN L+    +  +M EA  +   M  KG  PD ++Y+ 
Sbjct: 294 VMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYST 353

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+    +KA  L +EM  K + P  +TY++L+  L    R+ +A  LF   + +G
Sbjct: 354 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 413

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD V +  L+D  C N  ++ A +LLK ++   + PD   Y  ++ G CR G++E AR
Sbjct: 414 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 473

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   +  +G+ P+         TY  +I GLC  Q+G LAE  +L  EM  KG +P+  
Sbjct: 474 DLFSNLSSKGLHPN-------VWTYTIMINGLC--QQGLLAEASKLFGEMKRKGYSPNGC 524

Query: 299 TYFSLIEG 306
           TY  +  G
Sbjct: 525 TYNLITRG 532



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ P+ YT    ++  C   RL  A  +L ++ + G  P   T+NTLI G C +G 
Sbjct: 94  MDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGK 153

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       D+M+ +G  P   TY  LI+ L        A  +L+ M +    PD + Y  
Sbjct: 154 IGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTS 213

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF+L  EMIH+GI P++ TY SLI  L           L    +   
Sbjct: 214 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 273

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V+F+ ++D  C  G +  A  ++  M +  V P+ VTYN LM G C + +++EA 
Sbjct: 274 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 333

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +G  PD +S       Y+ LI G CK Q  + A  L  EM  K + P+  TY
Sbjct: 334 KVFDTMVCKGFAPDVVS-------YSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTY 386

Query: 301 FSLIEGIASVDKAAES 316
            +L+ G+  V +  ++
Sbjct: 387 STLMHGLCHVGRLQDA 402



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 7/279 (2%)

Query: 34  EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
            QM   G+ P   T N LI+ +C+   L  AFS   +++K G  P  +T+N LI  L +E
Sbjct: 92  HQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVE 151

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
            K+ E   +  +M  +G  P+ +TY  LING C+ G+   A  L   M     QP ++ Y
Sbjct: 152 GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVY 211

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           TS+I  L K  ++ +A  LF   + +G+ P I  +N+LI   C     +   +LL EM  
Sbjct: 212 TSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVN 271

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
            K+ P+ V ++T++   C++GKV EA  ++D M +RG++P+ +       TYNAL+ G C
Sbjct: 272 SKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV-------TYNALMDGHC 324

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              E D A ++   MV KG  PD  +Y +LI G   + +
Sbjct: 325 LRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQR 363



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 123/245 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD  +Y + ++G CK  R+E+A  + E+M    L+P  VTY+TL+ G C+ G 
Sbjct: 339 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 398

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   EMV +G +P   +Y +L+  L   R++ EA  +LK +    + PD   Y I
Sbjct: 399 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTI 458

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G CR G  + A  L   +  KG+ P + TYT +I  L +Q  + EA +LF     KG
Sbjct: 459 VIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 518

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +N +  G   N    R   LL+EM       D  T   L+      G  +  +
Sbjct: 519 YSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVK 578

Query: 241 RLLDQ 245
           ++L +
Sbjct: 579 QILSE 583



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 85/177 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  PD  +Y   +  +CK  RL+EA  +L+ ++ + + P    Y  +IDG C  G 
Sbjct: 409 MVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGE 468

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P   TY ++I+ L  +  + EA  +  EM  KG  P+  TYN+
Sbjct: 469 LEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNL 528

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  G+ R     +   L  EM+ +G    + T T L+ +LS         Q+   FL
Sbjct: 529 ITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSEFL 585



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A S  + M+H    P++  +T L+  ++K         L     + G+ P+I   N LI+
Sbjct: 52  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILIN 111

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C    +  AFS+L ++ ++   P+  T+NTL+ G C +GK+ E   L D+M   G   
Sbjct: 112 SFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG--- 168

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
               F P  +TY  LI GLCK      A  LLR M      PD   Y S+I+ +    + 
Sbjct: 169 ----FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 224

Query: 314 AESSN 318
            ++ N
Sbjct: 225 TQAFN 229


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 184/347 (53%), Gaps = 32/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK G    A R+L  M++    P  V Y ++ID  C    
Sbjct: 155 MIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   EM+ QGI P+  TYN LIH L  L E K V A  +L EM    I+P+ + +
Sbjct: 215 VTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA--LLNEMVNSKIMPNVVIF 272

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + +++  C+ G   +A  + D MI +G++P ++TY +L+     ++ M EA ++F+  + 
Sbjct: 273 STVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVC 332

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG  PD+V ++ LI+G+C    IE+A  L +EM R ++ P+ VTY+TLMHG C  G++++
Sbjct: 333 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQD 392

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  L  +M  RG  PD +S+                            +P    Y  +I 
Sbjct: 393 AIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 452

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           G+C+  E + A +L   + SKG+ P+  TY  +I G+      AE+S
Sbjct: 453 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 499



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 170/305 (55%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + P+   + + V  +CKEG++ EA  +++ M + G+ P  VTYN L+DG+C +  
Sbjct: 260 MVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSE 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D MV +G  P   +Y+ LI+     +++ +A  + +EM  K ++P+++TY+ 
Sbjct: 320 MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  + A +L  EM+ +G  P  ++Y  L+  L K  R+ EA  L +      
Sbjct: 380 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PDI ++  +IDG C  G +E A  L   +    +HP+  TY  +++G C+QG + EA 
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 499

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +MKR+G       ++P   TYN + +G  +N E     +LL+EM+++G + D +T 
Sbjct: 500 KLFGEMKRKG-------YSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTS 552

Query: 301 FSLIE 305
             L+E
Sbjct: 553 TVLVE 557



 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 163/308 (52%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P  +TY S +  +C     +  + +L +M  + ++P  V ++T++D  C +G 
Sbjct: 225 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M+K+G+ P   TYN L+    +  +M EA  +   M  KG  PD ++Y+ 
Sbjct: 285 VMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYST 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+    +KA  L +EM  K + P  +TY++L+  L    R+ +A  LF   + +G
Sbjct: 345 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD V +  L+D  C N  ++ A +LLK ++   + PD   Y  ++ G CR G++E AR
Sbjct: 405 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 464

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   +  +G+ P+         TY  +I GLC  Q+G LAE  +L  EM  KG +P+  
Sbjct: 465 DLFSNLSSKGLHPN-------VWTYTIMINGLC--QQGLLAEASKLFGEMKRKGYSPNGC 515

Query: 299 TYFSLIEG 306
           TY  +  G
Sbjct: 516 TYNLITRG 523



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ P+ YT    ++  C   RL  A  +L ++ + G  P   T+NTLI G C +G 
Sbjct: 85  MDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       D+M+ +G  P   TY  LI+ L        A  +L+ M +    PD + Y  
Sbjct: 145 IGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTS 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF+L  EMIH+GI P++ TY SLI  L           L    +   
Sbjct: 205 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V+F+ ++D  C  G +  A  ++  M +  V P+ VTYN LM G C + +++EA 
Sbjct: 265 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +G  PD +S       Y+ LI G CK Q  + A  L  EM  K + P+  TY
Sbjct: 325 KVFDTMVCKGFAPDVVS-------YSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTY 377

Query: 301 FSLIEGIASVDKAAES 316
            +L+ G+  V +  ++
Sbjct: 378 STLMHGLCHVGRLQDA 393



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 7/279 (2%)

Query: 34  EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
            QM   G+ P   T N LI+ +C+   L  AFS   +++K G  P  +T+N LI  L +E
Sbjct: 83  HQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVE 142

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
            K+ E   +  +M  +G  P+ +TY  LING C+ G+   A  L   M     QP ++ Y
Sbjct: 143 GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVY 202

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           TS+I  L K  ++ +A  LF   + +G+ P I  +N+LI   C     +   +LL EM  
Sbjct: 203 TSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVN 262

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
            K+ P+ V ++T++   C++GKV EA  ++D M +RG++P+ +       TYNAL+ G C
Sbjct: 263 SKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVV-------TYNALMDGHC 315

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              E D A ++   MV KG  PD  +Y +LI G   + +
Sbjct: 316 LRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQR 354



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 123/246 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD  +Y + ++G CK  R+E+A  + E+M    L+P  VTY+TL+ G C+ G 
Sbjct: 330 MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGR 389

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   EMV +G +P   +Y +L+  L   R++ EA  +LK +    + PD   Y I
Sbjct: 390 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTI 449

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G CR G  + A  L   +  KG+ P + TYT +I  L +Q  + EA +LF     KG
Sbjct: 450 VIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 509

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +N +  G   N    R   LL+EM       D  T   L+      G  +  +
Sbjct: 510 YSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVK 569

Query: 241 RLLDQM 246
           ++L + 
Sbjct: 570 QILSEF 575



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 85/177 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  PD  +Y   +  +CK  RL+EA  +L+ ++ + + P    Y  +IDG C  G 
Sbjct: 400 MVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGE 459

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P   TY ++I+ L  +  + EA  +  EM  KG  P+  TYN+
Sbjct: 460 LEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNL 519

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  G+ R     +   L  EM+ +G    + T T L+ +LS         Q+   FL
Sbjct: 520 ITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSEFL 576



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A S  + M+H    P++  +T L+  ++K         L     + G+ P+I   N LI+
Sbjct: 43  ALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILIN 102

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C    +  AFS+L ++ ++   P+  T+NTL+ G C +GK+ E   L D+M   G   
Sbjct: 103 SFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG--- 159

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
               F P  +TY  LI GLCK      A  LLR M      PD   Y S+I+ +    + 
Sbjct: 160 ----FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 215

Query: 314 AESSN 318
            ++ N
Sbjct: 216 TQAFN 220


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 7/314 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +R   PD+ TYG  V  +CK  R+++A   +E+M   G+ P A  YN ++ G C +  +E
Sbjct: 107 ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVE 166

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++MVKQ I P   TYN LI+ L    ++  A ++ KEM  KG VP  ++YN LI
Sbjct: 167 EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 226

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+C+  +   A  + D+M+     P ++TYT+LI  LSK  ++  A ++ +  + KG+ 
Sbjct: 227 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 286

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  ++ LIDG C    ++ A  LL++M    + P  VTYN L++  CR  K+E+A +L
Sbjct: 287 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 346

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              M +R         +PT +TYN L++ LC +++ D A  L  EM++KG  PD  TY +
Sbjct: 347 FRGMAQR-------RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDT 399

Query: 303 LIEGIASVDKAAES 316
           L  G+    K  E+
Sbjct: 400 LAWGLTRAGKVHEA 413



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 161/288 (55%), Gaps = 7/288 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++PD++ Y   +SG+C+E ++EEA  + E+M +  + P  VTYNTLI+G C    
Sbjct: 140 MATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWR 199

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+    EM  +G +PT  +YN LI     ++ +V A D+  +M     VP+ +TY  
Sbjct: 200 IETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTT 259

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G  + A  + D M+ KG+ P + TY+ LI    K  R+ EA +L E  + +G
Sbjct: 260 LIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 319

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +N L++  C    +E AF L + M + + HP  VTYNTL+   C   +++ A 
Sbjct: 320 IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAH 379

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           RL  +M  +G  PD I       TY+ L  GL +  +   A+EL+ +M
Sbjct: 380 RLYAEMIAKGCPPDAI-------TYDTLAWGLTRAGKVHEAQELMEKM 420



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/247 (35%), Positives = 142/247 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  TY + ++G+CK  R+E A  + ++M   G VPT V+YNTLIDG+C K +
Sbjct: 175 MVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 234

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D+MV+   +P   TY  LI  L    K+  A ++L  M +KG+ P+  TY+ 
Sbjct: 235 LVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSC 294

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+     +A  L ++M+ +GI PT++TY  L+  L + +++ +A +LF     + 
Sbjct: 295 LIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRR 354

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N L+   C +  ++ A  L  EM      PD +TY+TL  G  R GKV EA+
Sbjct: 355 CHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQ 414

Query: 241 RLLDQMK 247
            L+++MK
Sbjct: 415 ELMEKMK 421



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 159/316 (50%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V P + T+ +   G  K GRLE+   + + M E G    A  Y  LI   C  GN
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+     M  +     A  Y+ +I+ L    ++ EA +++++M      PD++TY  
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGP 119

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C+      A +  +EM  +GI+P    Y  ++  L ++ ++ EA  LFE  + + 
Sbjct: 120 IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR 179

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N LI+G C    IE A+ L KEM      P EV+YNTL+ G C++  +  A+
Sbjct: 180 INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 239

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + D+M R    P+ +       TY  LI GL K+ +   A E+L  MV KG+TP+  TY
Sbjct: 240 DVFDKMVRSNCVPNVV-------TYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATY 292

Query: 301 FSLIEGIASVDKAAES 316
             LI+G   V +  E+
Sbjct: 293 SCLIDGFCKVRRVDEA 308


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 183/316 (57%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  PD  TY   V+G+CKEGRL+EA + L  M  +G  P  +T+N ++   C+ G 
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++G  P+  T+N+LI+ L  +  +  A D+L++M + G  P+S++YN 
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNP 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A    + M+ +G  P ++TY +++  L K  ++ +A ++     +KG
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G   +A  LL EM    + PD +TY++L+ G  R+GKV+EA 
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +   + +R G++P+ +       T+N+++ GLCK ++ D A + L  M+++G  P + +Y
Sbjct: 505 KFFHEFERMGVRPNAV-------TFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSY 557

Query: 301 FSLIEGIASVDKAAES 316
             LIEG+A    A E+
Sbjct: 558 TILIEGLAYEGMAKEA 573



 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 176/316 (55%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G  PD  TY   +SG CK G +  A  +L++M    + P  VTYNT++   C+ G 
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGK 219

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D M+++   P   TY +LI     +  + +A  +L EM ++G  PD +TYN+
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNV 279

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G   +A    ++M   G QP ++T+  ++  +    R ++A++L  + L KG
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V FN LI+  C  G + RA  +L++M +    P+ ++YN L+HG C++ K++ A 
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAI 399

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L++M  RG  PD +       TYN ++  LCK+ + + A E+L ++ SKG +P   TY
Sbjct: 400 EYLERMVSRGCYPDIV-------TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY 452

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G+A   K  ++
Sbjct: 453 NTVIDGLAKAGKTGKA 468



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 152/325 (46%), Gaps = 31/325 (9%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + + G LEE  + LE M  +G VP  +   TLI G+C  G    A    + +   G +P 
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD 171

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TYN++I       K  E ++ L  +    + PD +TYN ++   C  G  K+A  + D
Sbjct: 172 VITYNVMISGYC---KAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
            M+ +   P ++TYT LI    + + + +A +L +    +G  PD+V +N L++G C  G
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A   L +M      P+ +T+N ++   C  G+  +A +LL  M R+G  P  ++FN
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P  L+YN L+ G CK ++ D A E L  MVS+
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G  PD  TY +++  +    K  ++
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDA 433



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 139/251 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+   ++ +C++G L  A  +LE+M ++G  P +++YN L+ G+C +  
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKK 394

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + + MV +G  P   TYN ++  L  + K+ +A ++L ++  KG  P  ITYN 
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G   KA  L DEM  K ++P  +TY+SL+  LS++ ++ EA + F  F   G
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V FN+++ G C     +RA   L  M      P E +Y  L+ G   +G  +EA 
Sbjct: 515 VRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEAL 574

Query: 241 RLLDQMKRRGI 251
            LL+++  +G+
Sbjct: 575 ELLNELCNKGL 585



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 133/282 (47%), Gaps = 15/282 (5%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
           Q++ +GL   A  ++TL  G+ N        S     V + +       N  + +L+   
Sbjct: 62  QVESSGLNGRAQKFDTLASGHSNSNGNGHFSSANSSFVLEDV-----ESNNHLRQLVRTG 116

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           ++ E    L+ M   G VPD I    LI G+CR G  +KA  + + +   G  P ++TY 
Sbjct: 117 ELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYN 176

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
            +I    K   +  A  + +      + PD+V +N ++   C +G +++A  +L  M + 
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
             +PD +TY  L+   CR   V +A +LLD+M+ RG  PD +       TYN L+ G+CK
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVV-------TYNVLVNGICK 286

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
               D A + L +M S G  P+  T+  ++  + S  +  ++
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 96/182 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY + ++ +CK+G++E+A  +L Q+   G  P  +TYNT+IDG    G 
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM  + + P   TY+ L+  L  E K+ EA     E    G+ P+++T+N 
Sbjct: 465 TGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNS 524

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+     +A      MI++G +PT  +YT LI  L+ +    EA +L      KG
Sbjct: 525 IMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKG 584

Query: 181 ML 182
           ++
Sbjct: 585 LM 586



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 68/115 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++ ++PD+ TY S V G+ +EG+++EA +   + +  G+ P AVT+N+++ G C    
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQ 534

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            + A  F   M+ +G  PT ++Y +LI  L  E    EA ++L E+  KG++  S
Sbjct: 535 TDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKRS 589



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P++ T+ S + G+CK  + + A   L  M   G  PT  +Y  LI+G   +G  + A
Sbjct: 514 GVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEA 573

Query: 65  FSFRDEMVKQGIMPTAST 82
               +E+  +G+M  +S 
Sbjct: 574 LELLNELCNKGLMKRSSA 591


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 181/321 (56%), Gaps = 10/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+G+ P+ +TY   V G C+ G L+EA++++E M  N L+PT  TYN L++G+CN G 
Sbjct: 274 MKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGK 333

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF  RDEM K  ++P   TYN LI      R   E   +++EM +KG+  +++TYNI
Sbjct: 334 IDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNI 393

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C+ GN  +A +  D+M   G+ P  +TY +LI    K  +M +A ++ +   +KG
Sbjct: 394 ILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKG 453

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D    N ++   C    ++ A++LL    +     DEV+Y  L+ G  +  K + A 
Sbjct: 454 LKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRAL 513

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+MK R I P  I       TYN++I GLC++++ D A + L EM+  G+ PD+ TY
Sbjct: 514 NLWDEMKERQIMPSTI-------TYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTY 566

Query: 301 FSLIEGI---ASVDKAAESSN 318
             +I G     +V+KA +  N
Sbjct: 567 NIIIHGFCLEGNVEKAFQFHN 587



 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 174/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+ ++ TY   +  MCK+G + EA+  L++M+ENGL P  VTYNTLI  YC  G 
Sbjct: 379 MDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGK 438

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   DEM  +G+     T N ++H L +E+K+ EA ++L    ++G + D ++Y I
Sbjct: 439 MGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGI 498

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY +     +A +L DEM  + I P+ +TY S+I  L +  ++ +A       L  G
Sbjct: 499 LILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENG 558

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N +I G C  GN+E+AF    EM      PD  T N L+ G CR+G +E+A 
Sbjct: 559 LVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKAL 618

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L + +  +G   D +       TYN +I  LCK  + + A +LL EM +K + PD  TY
Sbjct: 619 KLFNTLVSKGKDIDVV-------TYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTY 671

Query: 301 FSLIEGIASVDKAAES 316
             +I  +    +  E+
Sbjct: 672 KVIIAALTDAGRIKEA 687



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 173/334 (51%), Gaps = 16/334 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++ D++T  + +  +C E +L+EA  +L    + G +   V+Y  LI GY     
Sbjct: 449 MTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEK 508

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +  DEM ++ IMP+  TYN +I  L   RK+ +A D L EM E G+VPD  TYNI
Sbjct: 509 GDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNI 568

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C  GN +KAF  H+EMI    +P + T   L+  L ++  + +A +LF   ++KG
Sbjct: 569 IIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKG 628

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+V +N +I   C  G  E A+ LL EM+  K+ PD+ TY  ++      G+++EA 
Sbjct: 629 KDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAE 688

Query: 241 RLLDQMKRRGIKPDH--------------IS--FNPTRLTYNALIQGLCKNQEGDLAEEL 284
               +M   GI  D               +S  F+   + Y+  I  LC   +   A  L
Sbjct: 689 EFTLKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHL 748

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             E+  +G+  +  TY +L+EG+    K+   ++
Sbjct: 749 FVEVTKEGVALNKYTYLNLMEGLIKRRKSTSKAS 782



 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 170/345 (49%), Gaps = 31/345 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P++ ++   + G C E ++++A   + +M E G VP  V+YNT++D    +  L+ A
Sbjct: 208 GVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEA 267

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M  +G+ P   TYN+L+        + EA  +++ M    ++P   TYN+L+NG
Sbjct: 268 RDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNG 327

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G   +AF + DEM    + P ++TY +LI   S+     E   L E    KG+  +
Sbjct: 328 FCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCN 387

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N ++   C  GN+  A + L +M+   + PD VTYNTL+   C+ GK+ +A R++D
Sbjct: 388 AVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMD 447

Query: 245 QMKRRGIKPDHISFNPT----------------------------RLTYNALIQGLCKNQ 276
           +M  +G+K D  + N                               ++Y  LI G  K++
Sbjct: 448 EMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDE 507

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAESSN 318
           +GD A  L  EM  + I P   TY S+I G+     VD+A +  N
Sbjct: 508 KGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLN 552



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 169/321 (52%), Gaps = 10/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK---EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           MK    +P+  T  + ++ + +      +  A ++L+   + G+VP   ++N LI GYC 
Sbjct: 166 MKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCL 225

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +  ++ A  + ++M + G +P   +YN ++  LL  R + EA D+L +M  KG+ P+  T
Sbjct: 226 ESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHT 285

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN+L+ GYCR G  K+A  + + M    + PT+ TY  L+       ++ EA ++ +   
Sbjct: 286 YNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEME 345

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
              +LPD+V +N LIDG     +    +SL++EMD+  V  + VTYN ++   C++G + 
Sbjct: 346 KMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMT 405

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA   LD+M+  G+ PD +       TYN LI   CK  +   A  ++ EM SKG+  D 
Sbjct: 406 EATTTLDKMEENGLSPDCV-------TYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDT 458

Query: 298 NTYFSLIEGIASVDKAAESSN 318
            T  +++  +    K  E+ N
Sbjct: 459 WTLNTILHCLCVEKKLDEAYN 479



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---ERKMVEA 99
           P+    +T I  Y       +A    ++M +    P   T N L++ L+       ++ A
Sbjct: 138 PSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLA 197

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
             +LK+  + G+VP++ ++NILI GYC     K A    ++M   G  P  ++Y +++  
Sbjct: 198 RQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDA 257

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K+  + EA  L  +  +KG+ P+   +N L+ G+C  G ++ A  +++ M R  + P 
Sbjct: 258 LLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPT 317

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             TYN L++G C  GK++EA R+ D+M++  + PD +       TYN LI G  + ++  
Sbjct: 318 VWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVV-------TYNTLIDGCSQWRDSS 370

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
               L+ EM  KG+  +  TY  +++ +       E++ +
Sbjct: 371 EVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTT 410


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 183/325 (56%), Gaps = 16/325 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PDS++YG  + G+ K G+L +A  + +++  +G+ P+ V Y +LI G C   +
Sbjct: 314 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 373

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +M ++G  P+  TYN++I        + EA D++K+M E G VPD +TYN 
Sbjct: 374 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 433

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ--------- 171
           +++G C+    ++A  L +EM   G  P   ++ ++I  L +Q+++ +A Q         
Sbjct: 434 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFR 493

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L +     G +PD+V ++ LI G C+   ++ A  LL++M + +  P  VT NTL+HG C
Sbjct: 494 LLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLC 553

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + G+++EAR +LD M   G  PD +       TYN L+ G C+  + + A ELL +MV++
Sbjct: 554 KAGRIKEAREVLDAMVSSGQSPDVV-------TYNTLVHGHCRAGQTERARELLSDMVAR 606

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G+ P+  TY +L+ G+   ++  E+
Sbjct: 607 GLAPNVVTYTALVSGLCKANRLPEA 631



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 170/325 (52%), Gaps = 14/325 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKE---------GRLEEASRMLEQMKENGLVPTAVTYNTL 51
           M+  G  P+  ++ + + G+C++         G+L+EA R+L++M ++G VP  VTY+TL
Sbjct: 454 MERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTL 513

Query: 52  IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI 111
           I G C+   ++ A    ++MVK+   PT  T N LIH L    ++ EA ++L  M   G 
Sbjct: 514 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 573

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
            PD +TYN L++G+CR G  ++A  L  +M+ +G+ P ++TYT+L+  L K NR+ EA  
Sbjct: 574 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 633

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           +F    + G  P++  + ALI G C+ G ++    L  EM    + PD V Y TL    C
Sbjct: 634 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 693

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + G+   A  +L +  R  ++ +          Y   + GL +  + ++A   +R+MV  
Sbjct: 694 KSGRSARALEILRE-GRESLRSEAWGDE----VYRFAVDGLLEAGKMEMALGFVRDMVRG 748

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G  P      SL+ G+    +  E+
Sbjct: 749 GQLPAPERCASLVAGLCKSGQGGEA 773



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 168/325 (51%), Gaps = 22/325 (6%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P   T    + G C  G++++A  +L  M +    P  V+Y T++DG C  G +E A  
Sbjct: 209 EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVR 268

Query: 67  -FRDEMVKQGIMPTAST-----YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            F D  +      ++S      YN++I  L    ++ EA  M ++M E+ + PDS +Y I
Sbjct: 269 LFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGI 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G    A +L  +++H G+ P+ + YTSLI  L   N   +A +LF +   +G
Sbjct: 329 LIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 388

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  V +N +ID  C  G +E A  L+K+M      PD VTYNT+M G C+  +VEEA 
Sbjct: 389 CPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEAL 448

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN-------QEGDLAE--ELLREMVSK 291
            L ++M+R G  P+       R ++N +I GLC+        Q G L E   LL+ M   
Sbjct: 449 LLFNEMERLGCTPN-------RRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDD 501

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G  PD  TY +LI G+ S+ +  ++
Sbjct: 502 GHVPDVVTYSTLISGLCSIARVDDA 526



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 150/311 (48%), Gaps = 10/311 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD   Y   +  + K    E   +M++ M + G  P + T+ T++ G C  G ++ A   
Sbjct: 44  PD--VYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELV 101

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            DEM  + I P  +T + L HEL +   M  A  +L+ M     V +S  YNI++   C+
Sbjct: 102 MDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMP----VANSSAYNIVVVALCK 157

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                 A  L   M  K I     +  S++  L    R+ EA Q++     +   P +V 
Sbjct: 158 AARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRRE---PCLVT 214

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            N L++G C+ G +++A  LL+ M   +  PDEV+Y T++ G C+ G+VEEA RL    +
Sbjct: 215 LNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRE 274

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                    S    R  YN +I GLC+N   D A ++  +M  + ++PD  +Y  LI+G+
Sbjct: 275 LPSSSSSSSSPPSLR-GYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGL 333

Query: 308 ASVDKAAESSN 318
           A   K  ++ N
Sbjct: 334 AKAGKLNDARN 344



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 6/250 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R  +P   T  + + G+CK GR++EA  +L+ M  +G  P  VTYNTL+ G+C  G 
Sbjct: 533 MVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQ 592

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     +MV +G+ P   TY  L+  L    ++ EA  +  +M   G  P+  TY  
Sbjct: 593 TERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTA 652

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF----ENF 176
           LI G+C  G       L  EM+  GI P  + Y +L   L K  R   A ++     E+ 
Sbjct: 653 LILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESL 712

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
            ++    ++  F   +DG    G +E A   +++M R    P      +L+ G C+ G+ 
Sbjct: 713 RSEAWGDEVYRFA--VDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQG 770

Query: 237 EEARRLLDQM 246
            EAR +L+++
Sbjct: 771 GEARAVLEEI 780



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 158/346 (45%), Gaps = 53/346 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PDS+T+ + + G+CK G+++EA  ++++M+   + P   T + L    C +G+
Sbjct: 70  MVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGS 129

Query: 61  LEMAFSFRDEMVKQGIMPTA--STYNLLIHELLMERKMVEADDMLKEMGEKGIV------ 112
           +E AF   +      IMP A  S YN+++  L    ++ +A ++ + M EK I       
Sbjct: 130 MERAFQLLE------IMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSL 183

Query: 113 --------------------------PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
                                     P  +T N+L+ G+C  G   KA  L   M  +  
Sbjct: 184 DSVLVGLMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEEC 243

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFEN------FLAKGMLPDIVMFNALIDGHCTNGN 200
            P  ++Y +++  L K  R+ EA +LF +        +    P +  +N +I G C N  
Sbjct: 244 APDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDR 303

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           I+ A  + ++M+   V PD  +Y  L+ G  + GK+ +AR L  ++   G+ P  ++   
Sbjct: 304 IDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVA--- 360

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               Y +LI GLC     D A EL  +M  +G  P   TY  +I+ 
Sbjct: 361 ----YTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDA 402



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 25/286 (8%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMA---FSFRDEMVKQGIMPTASTYNLLIHELLM 92
           M + G+ P  + + ++I G+CN G    A   FS  +E       P    YN+LI  L  
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHS----PYPDVYNVLIDSLSK 56

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
            ++      M++ M ++G  PDS T+  ++ G C+ G   +A  + DEM  + I P   T
Sbjct: 57  RQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFAT 116

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLP--DIVMFNALIDGHCTNGNIERAFSLLKE 210
            + L   L  +  M  A QL E      ++P  +   +N ++   C    ++ A  L + 
Sbjct: 117 SSFLAHELCLRGSMERAFQLLE------IMPVANSSAYNIVVVALCKAARVDDALELART 170

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M   ++     + ++++ G    G+++EA ++  + +R           P  +T N L++
Sbjct: 171 MSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRR----------EPCLVTLNVLLE 220

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           G C   + D A ELLR M  +   PD+ +Y ++++G+    +  E+
Sbjct: 221 GFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEA 266


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 172/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD YTY + +   CK    + A ++L +M+E G     VTYN LI G C  G 
Sbjct: 235 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 294

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F+ +M   G++P   TY  LI+ L   R+  EA  +L EM    + P+ + Y  
Sbjct: 295 VEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYAN 354

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ R GNA +AF +  EM+  G+QP  +TY +L+  L K  +M  A  L +  +   
Sbjct: 355 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 414

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +N +I+GH  + + + AF LL EM+   + P+  TY+ ++HG C+ G+ E+A 
Sbjct: 415 HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 474

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M  +G+KP+   + P       LI G C+     LA E+  +M    + PD   Y
Sbjct: 475 DLLEEMTTKGLKPNAFVYAP-------LISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 527

Query: 301 FSLIEGIASVDKAAESS 317
            SLI G++ V +  ES+
Sbjct: 528 NSLIFGLSKVGRVEEST 544



 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 174/319 (54%), Gaps = 7/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD +TYG+ ++G+CK  R  EA  +L++M    L P  V Y  LIDG+  +GN
Sbjct: 305 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 364

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    EMV  G+ P   TY+ L+  L    +M  A  +LK+M      PD+ITYN+
Sbjct: 365 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 424

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+ R  + K AF L  EM + GI P + TY+ +I  L +     +A  L E    KG
Sbjct: 425 IIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG 484

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++  LI G+C  GN+  A  +  +M ++ V PD   YN+L+ G  + G+VEE+ 
Sbjct: 485 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 544

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +   QM+ RG+ P+         TY+ LI G  KN + + AE+L++ M+  G+ P+D  Y
Sbjct: 545 KYFAQMQERGLLPN-------EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 597

Query: 301 FSLIEGIASVDKAAESSNS 319
             L+E     D   + S++
Sbjct: 598 IDLLESYFKSDDIEKVSST 616



 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 174/310 (56%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P+ YTY   + G+C+ G  E+AS +LE+M   GL P A  Y  LI GYC +GN
Sbjct: 445 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 504

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    D+M K  ++P    YN LI  L    ++ E+     +M E+G++P+  TY+ 
Sbjct: 505 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 564

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY + G+ + A  L   M+  G++P  + Y  L+    K + + +    F++ L +G
Sbjct: 565 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 624

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D  ++  LI    ++GN+E AF +L  +++    PD   Y++L+ G C+    E+A 
Sbjct: 625 VMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAF 684

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LD+M ++G+ P+ +        YNALI GLCK+ +   A  +   +++KG+ P+  TY
Sbjct: 685 GILDEMSKKGVDPNIV-------CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 737

Query: 301 FSLIEGIASV 310
            SLI+G   V
Sbjct: 738 TSLIDGSCKV 747



 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 175/343 (51%), Gaps = 44/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQP+  TY + V G+CK G+++ AS +L+QM  +   P  +TYN +I+G+    +
Sbjct: 375 MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHS 434

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    EM   GI P   TY+++IH L    +  +A D+L+EM  KG+ P++  Y  
Sbjct: 435 KKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAP 494

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR GN   A  + D+M    + P +  Y SLIF LSK  R+ E+ + F     +G
Sbjct: 495 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 554

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV------------------- 221
           +LP+   ++ LI G+  NG++E A  L++ M    + P++V                   
Sbjct: 555 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 614

Query: 222 ----------------TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLT 264
                            Y  L+H     G +E A R+L  +++ G  PD H+        
Sbjct: 615 STFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV-------- 666

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           Y++LI GLCK  + + A  +L EM  KG+ P+   Y +LI+G+
Sbjct: 667 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 709



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 168/315 (53%), Gaps = 8/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ P+ +TY   + G  K G LE A +++++M + GL P  V Y  L++ Y    +
Sbjct: 550 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 609

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   S    M+ QG+M     Y +LIH L     M  A  +L  + + G VPD   Y+ 
Sbjct: 610 IEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSS 669

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + +KAF + DEM  KG+ P ++ Y +LI  L K   +  A  +F + LAKG
Sbjct: 670 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 729

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V + +LIDG C  G+I  AF L  EM    + PD   Y+ L  G    G +E+A 
Sbjct: 730 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 789

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+++M  RG    H S +    ++N L+ G CK  +     +LL  ++ +G+ P+  T 
Sbjct: 790 FLIEEMFLRG----HASIS----SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 841

Query: 301 FSLIEGIASVDKAAE 315
            ++I G++   K +E
Sbjct: 842 ENIISGLSEAGKLSE 856



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 159/313 (50%), Gaps = 28/313 (8%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           K GR+++A+ ++  M++ G+ P+    N L+        + + +  R+ MV  GI P   
Sbjct: 186 KSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVY 245

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TY+ LI      R+   A  +L EM E+G   +++TYN+LI G CR G  ++AF    +M
Sbjct: 246 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 305

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
              G+ P   TY +LI  L K  R  EA  L +      + P++V++  LIDG    GN 
Sbjct: 306 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 365

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-- 259
           + AF ++KEM    V P+++TY+ L+ G C+ G+++ A  LL QM R   +PD I++N  
Sbjct: 366 DEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLI 425

Query: 260 --------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
                                     P   TY+ +I GLC++ E + A +LL EM +KG+
Sbjct: 426 IEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGL 485

Query: 294 TPDDNTYFSLIEG 306
            P+   Y  LI G
Sbjct: 486 KPNAFVYAPLISG 498



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 154/329 (46%), Gaps = 12/329 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV  D+  YG  +  +   G +E A R+L  +++NG VP    Y++LI G C   +
Sbjct: 620 MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTAD 679

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E AF   DEM K+G+ P    YN LI  L     +  A ++   +  KG+VP+ +TY  
Sbjct: 680 REKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 739

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF L++EM+  GI P    Y+ L    S    + +A  L E    +G
Sbjct: 740 LIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG 799

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I  FN L+DG C  G ++    LL  +    + P+ +T   ++ G    GK+ E  
Sbjct: 800 H-ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 858

Query: 241 RLLDQMKRRGIKPDHISFNPTRL-----------TYNALIQGLCKNQEGDLAEELLREMV 289
            +  +++++  +     F+   +             + +I+  CK    D A  L   +V
Sbjct: 859 TIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIV 918

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +K      ++Y ++++ +    K +E+ N
Sbjct: 919 AKSAPMGCSSYLAIVDNLCRKGKLSEALN 947



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 140/274 (51%), Gaps = 25/274 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P+   Y + + G+CK G +  A  +   +   GLVP  VTY +LIDG C  G+
Sbjct: 690 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 749

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   +EM+  GI P A  Y++L         + +A  +++EM  +G    S ++N 
Sbjct: 750 ISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASIS-SFNN 808

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA----------- 169
           L++G+C+ G  ++   L   ++ +G+ P  LT  ++I  LS+  ++ E            
Sbjct: 809 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 868

Query: 170 --------DQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
                     LF + + +G +P D+V  + +I  HC  GN+++A  +L+++   K  P  
Sbjct: 869 SESAARHFSSLFMDMINQGKIPLDVV--DDMIRDHCKEGNLDKAL-MLRDVIVAKSAPMG 925

Query: 221 VT-YNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
            + Y  ++   CR+GK+ EA  LL +M +RGI P
Sbjct: 926 CSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICP 959



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 21/164 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEA-------------------SRMLEQMKENGLVPT 44
           RG+ P++ T  + +SG+ + G+L E                    S +   M   G +P 
Sbjct: 832 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 891

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
            V  + +I  +C +GNL+ A   RD +V +      S+Y  ++  L  + K+ EA ++LK
Sbjct: 892 DVV-DDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 950

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI-HKGIQ 147
           EM ++GI P      IL+      G  ++  ++ D M+ HK +Q
Sbjct: 951 EMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNMLCHKWLQ 994



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 21/202 (10%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           ++ + V G CK G+++E  ++L  +   GLVP A+T   +I G    G L    +   E+
Sbjct: 805 SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 864

Query: 72  VKQGIMPTASTYNLLIHELLMERKMV--EADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
            ++     A  ++ L  +++ + K+     DDM+++                   +C+ G
Sbjct: 865 QQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRD-------------------HCKEG 905

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           N  KA  L D ++ K       +Y +++  L ++ ++ EA  L +    +G+ P      
Sbjct: 906 NLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCL 965

Query: 190 ALIDGHCTNGNIERAFSLLKEM 211
            L+    T+G I+   ++L  M
Sbjct: 966 ILLTNLHTSGYIQEHNTVLDNM 987


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 176/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+P+  TY S ++ +CK GR  EA ++ + M + GL P   TY TL+ GY  KG 
Sbjct: 297 MRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGA 356

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    +  D MV+ GI P    +N+LI     + K+ +A  +  +M + G+ P+ + Y  
Sbjct: 357 LVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGT 416

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+ G+   A    ++MI +G+ P ++ YTSLI  L   ++  +A++L    L +G
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG 476

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + FN++ID HC  G +  +  L   M R+ V PD +TYNTL+ G C  GK++EA 
Sbjct: 477 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 536

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TY  LI G C+    D A  L +EMVS G++P+  TY
Sbjct: 537 KLLASMVSVGVKPDIV-------TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 589

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 590 NIILQGLFHTRRTAAA 605



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 177/315 (56%), Gaps = 10/315 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M   G  PD ++Y + + G+C E R +EA  +L  M ++   G  P  V+YNT+++G+  
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G+ + A+S   EM+ +GI+P   TY+ +I  L   + M +A ++L  M + G++PD +T
Sbjct: 214 EGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN +++GYC  G  K+A     +M   G++P ++TY+SL+  L K  R  EA ++F++  
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 333

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ PDI  +  L+ G+ T G +    +LL  M R  + PD   +N L+    +Q KV+
Sbjct: 334 KRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVD 393

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  +  +M++ G+       NP  + Y  +I  LCK+   D A     +M+ +G+TP+ 
Sbjct: 394 QAMLVFSKMRQHGL-------NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446

Query: 298 NTYFSLIEGIASVDK 312
             Y SLI G+ + DK
Sbjct: 447 IVYTSLIHGLCTCDK 461



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 170/347 (48%), Gaps = 42/347 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY S ++ +CK   +++A  +L  M +NG++P  +TYN+++ GYC+ G 
Sbjct: 227 MLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQ 286

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +M   G+ P   TY+ L++ L    +  EA  +   M ++G+ PD  TY  
Sbjct: 287 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 346

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +  +L D M+  GIQP    +  LI   +KQ ++ +A  +F      G
Sbjct: 347 LLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHG 406

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG----------- 229
           + P++V +  +ID  C +G+++ A    ++M    + P+ + Y +L+HG           
Sbjct: 407 LNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAE 466

Query: 230 ------------------------RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                                    C++G+V E+ +L D M R G+KPD I       TY
Sbjct: 467 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII-------TY 519

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           N LI G C   + D A +LL  MVS G+ PD  TY +LI G   V +
Sbjct: 520 NTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSR 566



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 171/318 (53%), Gaps = 17/318 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P  +TY   +   C+ GRL+     L  + + G    A+T+  L+ G C   + +  M
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
               R  M + G +P   +YN L+  L  E +  EA ++L  M +    G  PD ++YN 
Sbjct: 148 DIVLR-RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG+ + G++ KA+S + EM+ +GI P ++TY+S+I  L K   M +A ++    +  G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N+++ G+C++G  + A   LK+M    V P+ VTY++LM+  C+ G+  EAR
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           ++ D M +RG++PD         TY  L+QG     +G L E   LL  MV  GI PD +
Sbjct: 327 KIFDSMTKRGLEPDIA-------TYRTLLQGYA--TKGALVEMHALLDLMVRNGIQPDHH 377

Query: 299 TYFSLIEGIASVDKAAES 316
            +  LI   A  +K  ++
Sbjct: 378 VFNILICAYAKQEKVDQA 395



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 158/286 (55%), Gaps = 10/286 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD + +   +    K+ ++++A  +  +M+++GL P  V Y T+ID  C  G+
Sbjct: 367 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGS 426

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + ++M+ +G+ P    Y  LIH L    K  +A++++ EM ++GI  ++I +N 
Sbjct: 427 VDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY +LI       +M EA +L  + ++ G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +  LI+G+C    ++ A +L KEM    V P+ +TYN ++ G     +   A+
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
            L   + + G + +         TYN ++ GLCKN   +L +E LR
Sbjct: 607 ELYVSITKSGTQLE-------LSTYNIILHGLCKN---NLTDEALR 642



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 144/304 (47%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+   Y S + G+C   + ++A  ++ +M + G+    + +N++ID +C +G 
Sbjct: 437 MIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  +    D MV+ G+ P   TYN LI    +  KM EA  +L  M   G+ PD +TY  
Sbjct: 497 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGT 556

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCR      A +L  EM+  G+ P ++TY  ++  L    R   A +L+ +    G
Sbjct: 557 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              ++  +N ++ G C N   + A  + + +    +  +  T+N ++    + G+++EA+
Sbjct: 617 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L       G+ PD         TY+ + + L +    +  ++L   M   G + D    
Sbjct: 677 DLFAAHSANGLVPD-------VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRML 729

Query: 301 FSLI 304
            S++
Sbjct: 730 NSIV 733



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 117/235 (49%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA+++L  M   G+ P  VTY TLI+GYC    ++ A
Sbjct: 511 GVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDA 570

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EMV  G+ P   TYN+++  L   R+   A ++   + + G   +  TYNI+++G
Sbjct: 571 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 630

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  RM EA  LF    A G++PD
Sbjct: 631 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 690

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  ++ + +     G++E    L   M+      D    N+++    ++G +  A
Sbjct: 691 VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 11/218 (5%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           +   G   + P   TY ILI   CR G     F+    ++ KG +   +T+T L+  L  
Sbjct: 80  MARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCA 139

Query: 163 QNRMIEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DR-MKVHP 218
             R  +A D +       G +PD+  +N L+ G C     + A  LL  M  DR     P
Sbjct: 140 DKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPP 199

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           D V+YNT+++G  ++G  ++A     +M  RGI PD +       TY+++I  LCK Q  
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVV-------TYSSIIAALCKAQAM 252

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           D A E+L  MV  G+ PD  TY S++ G  S  +  E+
Sbjct: 253 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 290



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 103/212 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TYG+ ++G C+  R+++A  + ++M  +G+ P  +TYN ++ G  +   
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 601

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      + K G     STYN+++H L       EA  M + +    +  ++ T+NI
Sbjct: 602 TAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 661

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    +CG   +A  L       G+ P + TY+ +   L +Q  + E D LF +    G
Sbjct: 662 MIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG 721

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
              D  M N+++      G+I RA + L  +D
Sbjct: 722 CSADSRMLNSIVRKLLQRGDITRAGTYLFMID 753



 Score = 41.6 bits (96), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +Q ++ T+   +  + K GR++EA  +      NGLVP   TY+ + +    +G+LE   
Sbjct: 652 LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELD 711

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                M + G    +   N ++ +LL    +  A   L  + EK    ++ T + L+
Sbjct: 712 DLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLL 768


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 177/308 (57%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +PD  TY   ++G+CKEGRL+EA + L  M   G  P  +T+N ++   C+ G 
Sbjct: 270 MRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGR 329

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++G  P+  T+N+LI+ L  +R +  A D+L++M + G +P+S++YN 
Sbjct: 330 WMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNP 389

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+     +A    + M+ +G  P ++TY +L+  L K  +   A ++     +KG
Sbjct: 390 LLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKG 449

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  E A  LL+EM R  + PD +TY+TL+ G   +GKV+EA 
Sbjct: 450 CSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAI 509

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   M       + +S  P+ +TYNA++ GLCK Q+   A + L  MV KG  P   TY
Sbjct: 510 KIFHDM-------EGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATY 562

Query: 301 FSLIEGIA 308
             LIEGIA
Sbjct: 563 TILIEGIA 570



 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 173/312 (55%), Gaps = 10/312 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++ G  PD  TY   + G CK G +++A ++LE+M    + P  VTYNT++   C+ G 
Sbjct: 168 LENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGK 224

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D  +++   P   TY +LI     +  + +A  +L EM +KG  PD +TYN+
Sbjct: 225 LKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNV 284

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G   +A    + M   G QP ++T+  ++  +    R ++A++L  + L KG
Sbjct: 285 LINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG 344

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V FN LI+  C    + RA  +L++M +    P+ ++YN L+HG C++ K++ A 
Sbjct: 345 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAI 404

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L+ M  RG  PD +       TYN L+  LCK+ + D A E+L ++ SKG +P   TY
Sbjct: 405 EYLEIMVSRGCYPDIV-------TYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITY 457

Query: 301 FSLIEGIASVDK 312
            ++I+G+  V K
Sbjct: 458 NTVIDGLTKVGK 469



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 162/311 (52%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD  TY + +  +C  G+L+EA  +L++  +    P  +TY  LI+  CN   +  A 
Sbjct: 205 VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAM 264

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM K+G  P   TYN+LI+ +  E ++ EA   L  M   G  P+ IT+NI++   
Sbjct: 265 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSM 324

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G    A  L  +M+ KG  P+++T+  LI  L ++  +  A  + E     G +P+ 
Sbjct: 325 CSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNS 384

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N L+ G C    ++RA   L+ M     +PD VTYNTL+   C+ GK + A  +L+Q
Sbjct: 385 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQ 444

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +  +G        +P  +TYN +I GL K  + + A ELL EM  KG+ PD  TY +L+ 
Sbjct: 445 LSSKGC-------SPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLR 497

Query: 306 GIASVDKAAES 316
           G+    K  E+
Sbjct: 498 GLGCEGKVDEA 508



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 148/322 (45%), Gaps = 31/322 (9%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + + G LEE  + LE+M   G +P  +   +LI G+C  G    A    + +   G +P 
Sbjct: 117 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPD 176

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TYN+LI       K  E D  L+ +    + PD +TYN ++   C  G  K+A  + D
Sbjct: 177 VITYNVLIGGYC---KSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 233

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
             + +   P ++TYT LI      + + +A +L +    KG  PD+V +N LI+G C  G
Sbjct: 234 RQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 293

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A   L  M      P+ +T+N ++   C  G+  +A RLL  M R+G  P  ++FN
Sbjct: 294 RLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFN 353

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P  L+YN L+ G C+ ++ D A E L  MVS+
Sbjct: 354 ILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 413

Query: 292 GITPDDNTYFSLIEGIASVDKA 313
           G  PD  TY +L+  +    KA
Sbjct: 414 GCYPDIVTYNTLLTALCKDGKA 435



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N+ + +L+   ++ E    L+ M  +G +PD I    LI G+CR G  +KA  + + + +
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P ++TY  LI    K   + +A Q+ E      + PD+V +N ++   C +G ++ 
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKE 227

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  +L    + + +PD +TY  L+   C    V +A +LLD+M+++G KPD +       
Sbjct: 228 AMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVV------- 280

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           TYN LI G+CK    D A + L  M   G  P+  T+  ++  + S  +  ++
Sbjct: 281 TYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDA 333



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 31/126 (24%)

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------------- 259
           +E   N  +    R G++EE  + L++M  +G  PD I+                     
Sbjct: 106 EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIM 165

Query: 260 ---------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                    P  +TYN LI G CK+ E D A ++L  M    + PD  TY +++  +   
Sbjct: 166 EILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDS 222

Query: 311 DKAAES 316
            K  E+
Sbjct: 223 GKLKEA 228


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 187/344 (54%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RGV+P+ + Y   + G+C+E R+ +A +M ++M    LV + VTYNTLIDGYC  G 
Sbjct: 202 MRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGE 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF  R+ M ++ + P   T+N L+  L   RKM EA  +LKEM   G +PD  TY+I
Sbjct: 262 LDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSI 321

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +G  RC +   A  L+++   KGI+    T + L+  L KQ ++ +A+++ + F   G
Sbjct: 322 LFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENG 381

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D V++N  ++G+C  G++ +A   ++ M+   + P+ +T+N+L+   C   ++++A 
Sbjct: 382 LVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAE 441

Query: 241 RLLDQMKRRGIKP----------------------------DHISFNPTRLTYNALIQGL 272
             + +M  +G+ P                            + I   P  ++Y +LI  L
Sbjct: 442 EWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCL 501

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK+ +   AE +LR+M+ +G+ P+   Y  LI+G   V K  ++
Sbjct: 502 CKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDA 545



 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 184/335 (54%), Gaps = 29/335 (8%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++ ++YT    ++G+CK+G++E+A  +L++  ENGLV   V YNT ++GYC  G++  
Sbjct: 345 KGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNK 404

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    + M   G+ P + T+N LI +    ++M +A++ +K+M EKG+ P   TYN LI+
Sbjct: 405 AILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLID 464

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY +     + F + ++M   G++P +++Y SLI  L K  +++EA+ +  + + +G+LP
Sbjct: 465 GYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLP 524

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +  ++N LIDG C  G ++ A     EM R ++ P  VTYN L+ G C++GK+ EA   L
Sbjct: 525 NAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFL 584

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
            Q+   G  PD I++N                            PT  TY+ LI G C  
Sbjct: 585 TQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG-CSK 643

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           +  +L E+L  EM+   + PD   Y ++I   A +
Sbjct: 644 EGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEI 678



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 177/308 (57%), Gaps = 10/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P+  +YGS ++ +CK+G++ EA  +L  M   G++P A  YN LIDG C  G 
Sbjct: 482 MEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGK 541

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F DEM++  I PT  TYN+LI  L  + K+ EA+D L ++   G  PD ITYN 
Sbjct: 542 VKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNS 601

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE-ADQLFENFLAK 179
           LI+GY   GN  K   L++ M + GI+PT+ TY  LI   SK+   IE  ++L+   L  
Sbjct: 602 LISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG--IELVEKLYNEMLQM 659

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            +LPD V++NA+I  +   GN ++A+SL + M    +HPD++TYN+L+ G  R+GK+   
Sbjct: 660 NLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNI 719

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L++ MK + + P          TY+ L++G C  ++   A    REMV     P+ + 
Sbjct: 720 KDLVNNMKAKELAPKAD-------TYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASI 772

Query: 300 YFSLIEGI 307
              L  G+
Sbjct: 773 CNELTAGL 780



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 32/345 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY--CNK 58
           MK + V P+  T+ S +SG+CK  +++EA  +L++M+ NG +P   TY+ L DG   C+ 
Sbjct: 272 MKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDD 331

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           GN   A    ++  ++GI     T ++L++ L  + K+ +A+++LK+  E G+V D + Y
Sbjct: 332 GN--GAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIY 389

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N  +NGYCR G+  KA    + M   G++P  +T+ SLI        M +A++  +    
Sbjct: 390 NTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAE 449

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG+ P +  +N LIDG+      +R F +L++M+ + V P+ V+Y +L++  C+ GK+ E
Sbjct: 450 KGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILE 509

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           A  +L  M  RG+ P+   +N                            PT +TYN LI 
Sbjct: 510 AEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLID 569

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           GLCK  +   AE+ L ++ S G +PD  TY SLI G A+    ++
Sbjct: 570 GLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSK 614



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 169/306 (55%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G++P+S T+ S +   C    +++A   +++M E G+ P+  TYNTLIDGY     
Sbjct: 412 MESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCT 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  F   ++M + G+ P   +Y  LI+ L  + K++EA+ +L++M  +G++P++  YN+
Sbjct: 472 FDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNM 531

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  K A    DEM+   I PT++TY  LI  L K+ ++ EA+       + G
Sbjct: 532 LIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSG 591

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N+LI G+   GN+ +   L + M  + + P   TY+ L+ G  ++G +E   
Sbjct: 592 HSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVE 650

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L ++M +  + PD       R+ YNA+I    +      A  L + M+ +GI PD  TY
Sbjct: 651 KLYNEMLQMNLLPD-------RVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTY 703

Query: 301 FSLIEG 306
            SLI G
Sbjct: 704 NSLILG 709



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 147/307 (47%), Gaps = 42/307 (13%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
           +++ +G       Y   I       NL+M   F D M K+G+ P    YN+LI  L  E+
Sbjct: 166 EIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREK 225

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           ++ +A+ M  EM    +V   +TYN LI+GYC+ G    AF + + M  K + P ++T+ 
Sbjct: 226 RIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFN 285

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH------------------- 195
           SL+  L K  +M EA  L +     G +PD   ++ L DG                    
Sbjct: 286 SLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEK 345

Query: 196 ----------------CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
                           C  G +E+A  +LK+     +  DEV YNT ++G CR G + +A
Sbjct: 346 GIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKA 405

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
              +++M+  G++P+ I+F       N+LI   C  +E D AEE +++M  KG+TP   T
Sbjct: 406 ILTIERMESFGLRPNSITF-------NSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVET 458

Query: 300 YFSLIEG 306
           Y +LI+G
Sbjct: 459 YNTLIDG 465



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 128/247 (51%), Gaps = 3/247 (1%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P   TY   + G+CK+G+L EA   L Q+  +G  P  +TYN+LI GY N GN+    
Sbjct: 557 ISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCL 616

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMER-KMVEADDMLKEMGEKGIVPDSITYNILING 124
              + M   GI PT  TY+ LI     E  ++VE   +  EM +  ++PD + YN +I+ 
Sbjct: 617 GLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEK--LYNEMLQMNLLPDRVVYNAMIHC 674

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y   GN +KA+SLH  M+ +GI P  +TY SLI    ++ ++     L  N  AK + P 
Sbjct: 675 YAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPK 734

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              ++ L+ GHC   +   A+   +EM      P+    N L  G  ++G+++E + +  
Sbjct: 735 ADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICS 794

Query: 245 QMKRRGI 251
           +M  +GI
Sbjct: 795 EMNVKGI 801



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 140/278 (50%), Gaps = 11/278 (3%)

Query: 42  VPTAVTYNTLIDGYCNKGN-LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100
           +P  +T + ++   C K   L  A    + M + G +P+  + +LL   L+ E++ V+  
Sbjct: 102 IPLRITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVV 161

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
           D+  E+   G   D+  Y   I    +  N K      D M  +G++P +  Y  LI  L
Sbjct: 162 DLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGL 221

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            ++ R+ +A+++F+      ++  IV +N LIDG+C  G ++ AF + + M    V P+ 
Sbjct: 222 CREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNI 281

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           +T+N+L+ G C+  K++EAR LL +M+  G  PD         TY+ L  GL +  +G+ 
Sbjct: 282 ITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDG-------YTYSILFDGLLRCDDGNG 334

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
           A EL  +   KGI  ++ T   L+ G+     V+KA E
Sbjct: 335 AMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEE 372



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 1/182 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G++P   TY   +SG  KEG +E   ++  +M +  L+P  V YN +I  Y   GN
Sbjct: 622 MKNLGIKPTVRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGN 680

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+S    M+ QGI P   TYN LI     E K+    D++  M  K + P + TY+I
Sbjct: 681 TQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDI 740

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+C   +   A+  + EM+     P       L   L ++ R+ E   +      KG
Sbjct: 741 LVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVKG 800

Query: 181 ML 182
           ++
Sbjct: 801 II 802


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 177/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P+  TY   V  +CK   +  A  ++++M E G  P  +T+N+L+DG+C +GN
Sbjct: 205 MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGN 264

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV +G+ P   TY+ LI  L   +K +EA ++L+EM  +G+ PD+ TY+ 
Sbjct: 265 VDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSA 324

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+    ++A  +   M   G  P ++ Y+S+I    K  +++EA +  +    + 
Sbjct: 325 LIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 384

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             PD+V +N +IDG C  G I  A  +L++M +   V PD VTY+T+++G C+   + EA
Sbjct: 385 KSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEA 444

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           ++LLD+M + G  PD +       TY  +I GLCK    + AE LL+ M   G  P+  T
Sbjct: 445 QKLLDRMCKAGCNPDVV-------TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVT 497

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    K  E+
Sbjct: 498 YTTLISGLCKARKVDEA 514



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 32/345 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G  PD++T+   ++ M   G L+ A   ++ ++  G  P  VTY  LI  +     
Sbjct: 138 MKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTYTALIAAFARAKK 194

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    +EM ++G  P   TYN+L+  L     +  A D++K+M E G  P+ +T+N 
Sbjct: 195 LEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNS 254

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ GN   A  L   M+ KG++P ++TY++LI  L K  + +EA ++ E    +G
Sbjct: 255 LVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRG 314

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   ++ALI G C    IE A  +L+ M      PD V Y++++H  C+ GK+ EA+
Sbjct: 315 VTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQ 374

Query: 241 RLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQG 271
           + L +M+++   PD +++N                             P  +TY+ +I G
Sbjct: 375 KTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVING 434

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LCK+     A++LL  M   G  PD  TY ++I+G+    +  E+
Sbjct: 435 LCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 479



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 161/291 (55%), Gaps = 6/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+RGV PD++TY + + G+CK  ++EEA +ML +M  +G  P  V Y+++I  +C  G 
Sbjct: 310 MKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 369

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYN 119
           L  A     EM KQ   P   TYN +I  L    K+ EA  +L++M E G ++PD +TY+
Sbjct: 370 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYS 429

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +ING C+     +A  L D M   G  P ++TYT++I  L K  R+ EA+ L +     
Sbjct: 430 TVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 489

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P++V +  LI G C    ++ A  +++EM      P+ VTYNT+++G C  G+++EA
Sbjct: 490 GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEA 549

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           ++L+ +MK           +P   TY  ++  L  +     AE+LL +M S
Sbjct: 550 QQLVQRMKD-----GRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKS 595



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 10/315 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G    ++++ S +  + +  +  EA  +          P   +YN +I G+CN G+L  A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM   G  P A T+  +I  +     +  A D L+ MG     P+ +TY  LI  
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNVVTYTALIAA 188

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + R    ++A  L +EM  +G  P ++TY  L+  L K + +  A  + +  +  G  P+
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPN 248

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ FN+L+DG C  GN++ A  LL  M    + P+ VTY+ L+ G C+  K  EA+ +L+
Sbjct: 249 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +MK RG+ PD         TY+ALI GLCK  + + AE++LR M   G TPD   Y S+I
Sbjct: 309 EMKTRGVTPDA-------FTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSII 361

Query: 305 EGIASVDKAAESSNS 319
                  K  E+  +
Sbjct: 362 HAFCKSGKLLEAQKT 376


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 168/304 (55%), Gaps = 10/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD YTYG+F+ G+CK GR+++A  M E+M E GL P  V   TLID +C +G+
Sbjct: 303 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +      R EM  +G+      YN L++     R M  A+D+++EM + G+ PD +TY  
Sbjct: 363 VTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  +  EM  +G+    +TYT+LI  LSK  R ++A+++    +  G
Sbjct: 423 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 482

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  +ID  C NG+++  F  LKEM     +P  VTYN +M+G C  G+++ A 
Sbjct: 483 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNAD 542

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M   G+ P+ I       TYN L+ G CK+ +    EEL     +KG+  D   Y
Sbjct: 543 MLLNAMLNIGVCPNDI-------TYNILLDGHCKHGKVRDTEEL---KSAKGMVSDFGVY 592

Query: 301 FSLI 304
            SLI
Sbjct: 593 TSLI 596



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 163/330 (49%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P++  +   +  M + G+L  A  + ++M   G+ PT VT+NTL+ G C   +L  A
Sbjct: 237 GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNA 296

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            + R  M K GI P   TY   I  L    ++ +A +M +EM E+G+ P+++    LI+ 
Sbjct: 297 NALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDA 356

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+      L  EM  +G++  ++ Y +L+    +   M  A+ + E     G+ PD
Sbjct: 357 HCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPD 416

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +  LIDG C  G ++ A  + +EM    V  D+VTY  L+ G  + G+  +A R+L 
Sbjct: 417 KVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILC 476

Query: 245 QMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQ 276
           +M   G++PD+ ++                            NP  +TYN ++ G C   
Sbjct: 477 EMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLG 536

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   A+ LL  M++ G+ P+D TY  L++G
Sbjct: 537 QMKNADMLLNAMLNIGVCPNDITYNILLDG 566



 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 140/253 (55%), Gaps = 7/253 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A++F   ++  G+ P A  +N+L+ +++   K+  A ++  EM  +G+ P  +T+N L++
Sbjct: 226 AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 285

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+  +   A +L   M   GI P + TY + I  L K  R+ +A ++FE    +G+ P
Sbjct: 286 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 345

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + V+   LID HC  G++     L  EM    V  D V YN L++G CR   ++ A  ++
Sbjct: 346 NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIV 405

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M++ G+KPD       ++TY  LI G CK  E D A E+ +EM  +G+  DD TY +L
Sbjct: 406 EEMRKDGLKPD-------KVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTAL 458

Query: 304 IEGIASVDKAAES 316
           I G++   ++ ++
Sbjct: 459 ISGLSKAGRSVDA 471



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           + EA      + + G+ P A  +N L+      G L  A +  DEM+++G+ PT  T+N 
Sbjct: 223 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 282

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+  +     +  A+ +   M + GI PD  TY   I G C+ G  + A  + +EM  +G
Sbjct: 283 LMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERG 342

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +  T+LI    K+  +    +L      +G+  D+V +NAL++G C   +++ A 
Sbjct: 343 LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAAN 402

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +++EM +  + PD+VTY TL+ G C++G+++ A  +  +M   G+  D +       TY
Sbjct: 403 DIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDV-------TY 455

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            ALI GL K      AE +L EM+  G+ PD+ TY  +I+  
Sbjct: 456 TALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAF 497



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 106/226 (46%), Gaps = 31/226 (13%)

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           +GI      ++ L+N   R  +  +A++ +  ++  G+ P    +  L+  + +  ++  
Sbjct: 204 RGIRVPMPAWSDLMN---RLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLAS 260

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  +F+  L +G+ P +V FN L+ G C   ++  A +L   M +  + PD  TY   + 
Sbjct: 261 ARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQ 320

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------PTR---- 262
           G C+ G++++A  + ++M  RG+ P+ +                          TR    
Sbjct: 321 GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKA 380

Query: 263 --LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             + YNAL+ G C+ ++   A +++ EM   G+ PD  TY +LI+G
Sbjct: 381 DLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDG 426



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 6/139 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD+ TY   +   CK G ++   + L++M+  G  P  VTYN +++G+C+ G 
Sbjct: 478 MMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 537

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M+  G+ P   TYN+L+       K+ + +++      KG+V D   Y  
Sbjct: 538 MKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVSDFGVYTS 594

Query: 121 LINGYCRCGNAKKAFSLHD 139
           LIN + +    K A S HD
Sbjct: 595 LINEFVK---KKSAKSYHD 610


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+SR V PD   + S +S   + G L++A      +KE GL+P  V Y  LI GYC KG 
Sbjct: 366 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A + R+EM++QG      TYN ++H L   + + EAD +  EM E+ + PDS T  I
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN + A  L  +M  K I+  ++TY +L+    K   +  A +++ + ++K 
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP  + ++ L++  C+ G++  AF +  EM    + P  +  N+++ G CR G   +  
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605

Query: 241 RLLDQMKRRGIKPDHISFN------------------------------PTRLTYNALIQ 270
             L++M   G  PD IS+N                              P   TYN+++ 
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILH 665

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           G C+  +   AE +LR+M+ +G+ PD +TY  +I G  S D   E+
Sbjct: 666 GFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 173/371 (46%), Gaps = 63/371 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +GV PD  TY + +S    +G +EEA  ++  M   G  P   TYNT+I+G C  G 
Sbjct: 261 VQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK 320

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
            E A     EM++ G+ P ++TY  L+ E   +  +VE + +  +M              
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSS 380

Query: 107 ---------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                 E G++PD++ Y ILI GYCR G    A +L +EM+ +G
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               ++TY +++  L K+  + EAD+LF     + + PD      LIDGHC  GN++ A 
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAM 500

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
            L ++M   ++  D VTYNTL+ G  + G ++ A+ +   M  + I P  IS++      
Sbjct: 501 ELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 PT +  N++I+G C++      E  L +M+S+G  PD 
Sbjct: 561 CSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDC 620

Query: 298 NTYFSLIEGIA 308
            +Y +LI G  
Sbjct: 621 ISYNTLIYGFV 631



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 158/299 (52%), Gaps = 9/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   D  TY + + G+CK   L EA ++  +M E  L P + T   LIDG+C  GN
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGN 495

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     +M ++ I     TYN L+        +  A ++  +M  K I+P  I+Y+I
Sbjct: 496 LQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSI 555

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+N  C  G+  +AF + DEMI K I+PT++   S+I    +     + +   E  +++G
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK--VHPDEVTYNTLMHGRCRQGKVEE 238
            +PD + +N LI G     N+ +AF L+K+M+  +  + PD  TYN+++HG CRQ +++E
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKE 675

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           A  +L +M  RG+ PD       R TY  +I G         A  +  EM+ +G +PDD
Sbjct: 676 AEVVLRKMIERGVNPD-------RSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 170/340 (50%), Gaps = 28/340 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  + YT    V+ +CK+G++E+    L Q++E G+ P  VTYNTLI  Y +KG +E A
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   + M  +G  P   TYN +I+ L    K   A ++  EM   G+ PDS TY  L+  
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+  +   +  +M  + + P ++ ++S++ + ++   + +A   F +    G++PD
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 409

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V++  LI G+C  G I  A +L  EM +     D VTYNT++HG C++  + EA +L +
Sbjct: 410 NVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 469

Query: 245 QMKRRGIKPDHISF--------------NPTRL--------------TYNALIQGLCKNQ 276
           +M  R + PD  +               N   L              TYN L+ G  K  
Sbjct: 470 EMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVG 529

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + D A+E+  +MVSK I P   +Y  L+  + S    AE+
Sbjct: 530 DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA 569



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 158/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S+G         + +  + + G +E A  + +++  +G+     T N +++  C  G 
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   +F  ++ ++G+ P   TYN LI     +  M EA +++  M  KG  P   TYN 
Sbjct: 251 MEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNT 310

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G  ++A  +  EM+  G+ P   TY SL+    K+  ++E +++F +  ++ 
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F++++     +GN+++A      +    + PD V Y  L+ G CR+G +  A 
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM 430

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M ++G   D +       TYN ++ GLCK +    A++L  EM  + + PD  T 
Sbjct: 431 NLRNEMLQQGCAMDVV-------TYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTL 483

Query: 301 FSLIEG 306
             LI+G
Sbjct: 484 TILIDG 489



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 143/344 (41%), Gaps = 45/344 (13%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S +  + +  + + GRL +A   L +M     V      N+L   + N G+ +  F    
Sbjct: 113 SLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLI 172

Query: 70  EMVKQ-----------------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
               Q                 G   +    N LI  L+    +  A  + +E+   G+ 
Sbjct: 173 RTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVG 232

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
            +  T NI++N  C+ G  +K  +   ++  KG+ P ++TY +LI   S +  M EA +L
Sbjct: 233 INVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFEL 292

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
                 KG  P +  +N +I+G C +G  ERA  +  EM R  + PD  TY +L+   C+
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLT 264
           +G V E  ++   M+ R + PD + F+                            P  + 
Sbjct: 353 KGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVI 412

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           Y  LIQG C+     +A  L  EM+ +G   D  TY +++ G+ 
Sbjct: 413 YTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 180/307 (58%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  TY + + G+C  G+L EA R+ ++M++ G  P  V YNT+ID  C    
Sbjct: 329 MVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRL 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  EMV +GI P A TY+ ++H      ++ EA  + KEM  + ++P+++T++I
Sbjct: 389 VNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSI 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G   +A  + + M  KG++P + TY +L+     + +M EA ++FE  + KG
Sbjct: 449 LVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKG 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  +N LI+G+C +  +++A +LL +M   K+ P+ VTYNT+M G C  G++ +A+
Sbjct: 509 CAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQ 568

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+        PT +TY+ L+ GLCK+   D A +L + M  K + PD   Y
Sbjct: 569 ELFKKMCSSGML-------PTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILY 621

Query: 301 FSLIEGI 307
             LIEG+
Sbjct: 622 TILIEGM 628



 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 175/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD+ TY S V G+C  G+L EA+R+ ++M++NG  P  VTYN +ID       
Sbjct: 259 MVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRL 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  EMV QGI P   TY  ++H L    ++ EA  + K+M +KG  PD + YN 
Sbjct: 319 VNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNT 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+      A     EM+ +GI P  +TY++++       ++ EA QLF+  + + 
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ + F+ L+DG C  G +  A  + + M    V P+  TYN LM+G C + K+ EAR
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ + M  +G  PD  S       YN LI G C ++  D A+ LL +M  K +TP+  TY
Sbjct: 499 KVFEIMVGKGCAPDLHS-------YNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTY 551

Query: 301 FSLIEGIASVDKAAES 316
            ++++G+  V +  ++
Sbjct: 552 NTIMKGLCYVGRLLDA 567



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD  T+ + ++G+C EG+++ A  +  +M  +G  P  ++YNTLI+G CN GN
Sbjct: 154 MFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGN 213

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             MA     +M + G  P   TYN +I  L  +R + +A D L EM  +GI PD+ITYN 
Sbjct: 214 TNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNS 273

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C  G   +A  L   M   G +P ++TY  +I  L K   + +A       + +G
Sbjct: 274 IVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQG 333

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +  ++ G C  G +  A  L K+M++    PD V YNT++   C+   V +A 
Sbjct: 334 IPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAM 393

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M  RGI P+ +       TY+ ++ G C   + D A +L +EMV + + P+  T+
Sbjct: 394 EFLSEMVDRGIPPNAV-------TYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTF 446

Query: 301 FSLIEGIASVDKAAES 316
             L++G+      +E+
Sbjct: 447 SILVDGLCQEGMVSEA 462



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 176/344 (51%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  +Y + ++G+C  G    A  + ++M++NG  P  VTYNT+ID  C    
Sbjct: 189 MVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRL 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  EMV +GI P A TYN ++H L    ++ EA  + K M + G  PD +TYNI
Sbjct: 249 VNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNI 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +      A     EM+ +GI P ++TYT+++  L    ++ EA +LF+    KG
Sbjct: 309 IIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N +ID  C +  +  A   L EM    + P+ VTY+T++HG C  G+++EA 
Sbjct: 369 CKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEAT 428

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +L  +M  R + P+ ++F+                            P   TYNAL+ G 
Sbjct: 429 QLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGY 488

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKA 313
           C   + + A ++   MV KG  PD ++Y  LI G  +   +DKA
Sbjct: 489 CLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKA 532



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 163/287 (56%), Gaps = 7/287 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY + + G C  G+L+EA+++ ++M    ++P  +T++ L+DG C +G 
Sbjct: 399 MVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGM 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M ++G+ P   TYN L++   +  KM EA  + + M  KG  PD  +YNI
Sbjct: 459 VSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNI 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC      KA +L  +M  K + P  +TY +++  L    R+++A +LF+   + G
Sbjct: 519 LINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSG 578

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           MLP ++ ++ L++G C +G+++ A  L K M   K+ PD + Y  L+ G    GK+E A+
Sbjct: 579 MLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAK 638

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
            L  ++   GI+P      P R TYN +I+GL K    D A EL R+
Sbjct: 639 GLFSKLSADGIQP------PGR-TYNVMIKGLLKEGLSDEAYELFRK 678



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV    Y+    ++ +C+   ++ A  +  +M + G+ P  +T+ TLI+G CN+G +++A
Sbjct: 123 GVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVA 182

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EMV+ G  P   +YN LI+ L        A  + K+M + G  P+ +TYN +I+ 
Sbjct: 183 VELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDS 242

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A     EM+ +GI P  +TY S++  L    ++ EA +LF+     G  PD
Sbjct: 243 LCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPD 302

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N +ID    +  +  A   L EM    + PD VTY T++HG C  G++ EA RL  
Sbjct: 303 VVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFK 362

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M+++G KPD ++       YN +I  LCK++  + A E L EMV +GI P+  TY +++
Sbjct: 363 KMEQKGCKPDVVA-------YNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415

Query: 305 EGIASVDKAAESS 317
            G  ++ +  E++
Sbjct: 416 HGFCNLGQLDEAT 428



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 134/247 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V P++ T+   V G+C+EG + EA  + E M E G+ P   TYN L++GYC +  
Sbjct: 434 MVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCK 493

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + MV +G  P   +YN+LI+     R+M +A  +L +M  K + P+++TYN 
Sbjct: 494 MNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNT 553

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C  G    A  L  +M   G+ PT++TY+ L+  L K   + EA +LF++   K 
Sbjct: 554 IMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKK 613

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+++  LI+G    G +E A  L  ++    + P   TYN ++ G  ++G  +EA 
Sbjct: 614 LEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAY 673

Query: 241 RLLDQMK 247
            L  + K
Sbjct: 674 ELFRKWK 680



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 147/303 (48%), Gaps = 7/303 (2%)

Query: 14  GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73
           G F S       +++A     +M      P+ V +   +                ++M  
Sbjct: 62  GGFASNSSNTISVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDL 121

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
            G+  T  + N+LI+ L     +  A  +  +M + GI PD IT+  LING C  G  K 
Sbjct: 122 FGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKV 181

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A  L++EM+  G +P +++Y +LI  L        A  +F+     G  P++V +N +ID
Sbjct: 182 AVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIID 241

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C +  +  A   L EM    + PD +TYN+++HG C  G++ EA RL  +M++ G KP
Sbjct: 242 SLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKP 301

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           D +       TYN +I  L K++  + A + L EMV +GI PD  TY +++ G+  + + 
Sbjct: 302 DVV-------TYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQL 354

Query: 314 AES 316
            E+
Sbjct: 355 NEA 357



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 115/215 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P+ YTY + ++G C   ++ EA ++ E M   G  P   +YN LI+GYCN   
Sbjct: 469 MTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRR 528

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +M  + + P   TYN ++  L    ++++A ++ K+M   G++P  +TY+I
Sbjct: 529 MDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSI 588

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G+  +A  L   M  K ++P ++ YT LI  +    ++  A  LF    A G
Sbjct: 589 LLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADG 648

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           + P    +N +I G    G  + A+ L ++   MK
Sbjct: 649 IQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMK 683


>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 171/342 (50%), Gaps = 41/342 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V+PDS TY SFV+G CK G L  A    ++M    + P   TY TL+DGY   G+
Sbjct: 227 MSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGS 286

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF   DE+V++G++P +  YN +IH L ME  M  A  +L +M +K I PD  TY+I
Sbjct: 287 LENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSI 346

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G CR G   +AF     ++   +     ++  +I  L + N +  A QL  N   +G
Sbjct: 347 VIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRG 406

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP---------------------- 218
           ++PD+V F  LID HC +G +E A  + ++M +    P                      
Sbjct: 407 LVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAI 466

Query: 219 ------------DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
                       D VTYNTL+HG C  GK+++A  L  +M+  GI   H+       TYN
Sbjct: 467 LLIDTLRRMGLFDVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHV-------TYN 519

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            LI  LCK      A+EL++ MV +G+ PD  TY  LI   +
Sbjct: 520 TLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFS 561



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 161/301 (53%), Gaps = 8/301 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ P+S  Y S +  +  EG +E AS +L  M +  + P   TY+ +I+G C  G L  
Sbjct: 300 KGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNE 359

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F   +++  ++  A ++N++I+ L     +  A  +L  M  +G+VPD +T+  LI+
Sbjct: 360 AFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTLID 419

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +C+ G  + A  ++++MI  G +P +L Y S+I   +K+     A  L +     G+  
Sbjct: 420 RHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMGLF- 478

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +N LI G+C  G I++AF+L  EM    +    VTYNTL++  C+ G V +A+ L+
Sbjct: 479 DVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELM 538

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M  RG+ PD++       TY  LI    K    +   EL   MV KG+ PD  TY ++
Sbjct: 539 KMMVLRGLIPDYV-------TYTILITSFSKKCSPEEVIELHDYMVLKGVVPDRQTYQTM 591

Query: 304 I 304
           +
Sbjct: 592 V 592



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 155/304 (50%), Gaps = 10/304 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     + + +F+S + K   +    +M ++M   G +    T+N +I     +G L  A
Sbjct: 123 GFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEA 182

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE---MGEKGIVPDSITYNIL 121
            S     +K GI P   T+N++I   +    M  A  ++++   M    + PDS+TYN  
Sbjct: 183 VSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSF 242

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +NG+C+ GN   A     EM+ K I+P + TY +L+   ++   +  A +L +  + KG+
Sbjct: 243 VNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLCDELVEKGL 302

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           LP+ V++N++I      G++E A  LL +M   +++PD+ TY+ ++ G CR G + EA +
Sbjct: 303 LPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFK 362

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
            L  +    +  D  S       +N +I  LC++     A++LL  M  +G+ PD  T+ 
Sbjct: 363 FLQMILEMSLVRDAFS-------HNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFG 415

Query: 302 SLIE 305
           +LI+
Sbjct: 416 TLID 419



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 1/229 (0%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D++++   ++ +C+   L  A ++L  M   GLVP  VT+ TLID +C  G +E A    
Sbjct: 375 DAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVY 434

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           ++M+K G  P    YN +I+    E     A  ++  +   G+  D +TYN LI+GYC C
Sbjct: 435 EKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMGLF-DVVTYNTLIHGYCNC 493

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G   +AF+L  EM + GI  + +TY +LI  L K   +++A +L +  + +G++PD V +
Sbjct: 494 GKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTY 553

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             LI       + E    L   M    V PD  TY T++    ++  VE
Sbjct: 554 TILITSFSKKCSPEEVIELHDYMVLKGVVPDRQTYQTMVIPLLQEESVE 602



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 95/163 (58%), Gaps = 1/163 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+   Y S ++G  KEG  + A  +++ ++  GL    VTYNTLI GYCN G 
Sbjct: 437 MIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRMGLFDV-VTYNTLIHGYCNCGK 495

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF+   EM   GI+ +  TYN LI+ L     +++A +++K M  +G++PD +TY I
Sbjct: 496 IDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTI 555

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           LI  + +  + ++   LHD M+ KG+ P   TY +++  L ++
Sbjct: 556 LITSFSKKCSPEEVIELHDYMVLKGVVPDRQTYQTMVIPLLQE 598



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 126/270 (46%), Gaps = 14/270 (5%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           +   ++ L+      G  E A+    ++   G   T   +N  +  LL    +     M 
Sbjct: 92  SPAVFDALVRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSHLLKLNDVNRFWKMY 151

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           KEM   G + +  T+N++I    + G   +A S+    +  GI P ++T+  +I    K 
Sbjct: 152 KEMVSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGAIKM 211

Query: 164 NRMIEADQL---FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
             M  A +L    E      + PD V +N+ ++G C  GN+  A    KEM   ++ P+ 
Sbjct: 212 GAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNV 271

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TY TL+ G  R G +E A RL D++  +G+ P+ +        YN++I  L  + EGD+
Sbjct: 272 RTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSV-------IYNSIIHWL--SMEGDM 322

Query: 281 --AEELLREMVSKGITPDDNTYFSLIEGIA 308
             A  LL +M+ K I PD  TY  +IEG+ 
Sbjct: 323 EGASLLLSDMIDKRIYPDQFTYSIVIEGLC 352



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 128/274 (46%), Gaps = 36/274 (13%)

Query: 62  EMAFSFRDEMV-KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE----KGIVPDSI 116
           ++A  F D ++ K+ ++ +  +  ++IH L+  ++    DD L  MG      GI P  +
Sbjct: 22  QLALEFHDWVLEKKSVLHSIESCCVVIHVLVNSKRY---DDALFIMGNLMNVNGISPLEV 78

Query: 117 TYNILINGYCRC-----------------GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
             + LI+ Y  C                 G  + A+ +  ++   G   T+  + + +  
Sbjct: 79  L-DALISSYDICKSSPAVFDALVRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSH 137

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K N +    ++++  ++ G + ++  FN +I      G +  A S++    +  + P+
Sbjct: 138 LLKLNDVNRFWKMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPN 197

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRG---IKPDHISFNPTRLTYNALIQGLCKNQ 276
            VT+N ++ G  + G ++ A +L+ +M+      +KPD +       TYN+ + G CK  
Sbjct: 198 VVTFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSV-------TYNSFVNGFCKIG 250

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
              +AEE  +EM+ K I P+  TY +L++G   V
Sbjct: 251 NLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRV 284


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 178/317 (56%), Gaps = 11/317 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKE-GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +G  P+  TY + +SG+C+E  RLE A ++LE+M  NG  P  V+YN LI G   +  + 
Sbjct: 216 KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVS 275

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      +++QG  P   TYN+LI  LL E ++ EA ++   + + G+ PD+ITY + I
Sbjct: 276 EALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 335

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G C+ G  + A  +  +M  KG  P ++++ ++I  L K+ R+ EA+ L     AKG  
Sbjct: 336 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCS 395

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR---QGKVEEA 239
           P+ + FN LI G C  G  ++A +  KEM +  V P  VTYN L+ G C+   +G+++EA
Sbjct: 396 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 455

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L D M  +G  PD +       TY+ALI GL K  + D A  LL  M +KG  P+  T
Sbjct: 456 ITLFDAMIEKGRVPDVV-------TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYT 508

Query: 300 YFSLIEGIASVDKAAES 316
           Y SLI G+  +DK  E+
Sbjct: 509 YNSLISGLCGLDKVDEA 525



 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 176/316 (55%), Gaps = 10/316 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G +P+  TY   + G+ KE R+ EA  +   + ++GL P A+TY   IDG C  G +E 
Sbjct: 287 QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVED 346

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M ++G +P   ++N +I+ L  E+++ EA+ +L  M  KG  P++I++N LI 
Sbjct: 347 ALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLIC 406

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK---QNRMIEADQLFENFLAKG 180
           G CR G  KKA +   EM+ +G++PT++TY  L+  L K   + R+ EA  LF+  + KG
Sbjct: 407 GQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKG 466

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V ++ALIDG    G ++ A  LL  M+     P+  TYN+L+ G C   KV+EA 
Sbjct: 467 RVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEAL 526

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M  +G  PD I       TY  +I  LCK +  D A  L    +  G+ P    Y
Sbjct: 527 ELFVAMVEKGCVPDTI-------TYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMY 579

Query: 301 FSLIEGIASVDKAAES 316
           FSLI+G+ +V +  E+
Sbjct: 580 FSLIDGLCAVARVDEA 595



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 175/335 (52%), Gaps = 32/335 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+  TY + +SG+C  GR+ +A  + E+M + G  P  VTYNTL+ G+C  G 
Sbjct: 76  MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGK 135

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D  VK+G +P   TYN LI+      K+ EA  +L+ M  + +VPD +TYN 
Sbjct: 136 LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNS 195

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE-ADQLFENFLAK 179
           L+NG C+ G   +A  L   ++ KG  P ++TY++LI  L ++ R +E A QL E  +  
Sbjct: 196 LVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN 252

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDIV +NALI G      +  A  L   + R    P+  TYN L+ G  ++ +V EA
Sbjct: 253 GCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEA 312

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             L   + + G++PD I++                             P  +++NA+I G
Sbjct: 313 FELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVING 372

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LCK +  D AE LL  M +KG +P+  ++ +LI G
Sbjct: 373 LCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICG 407



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 177/314 (56%), Gaps = 12/314 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   PD+YT G  +  + K G++E+A R +EQ+   GL   + T+N  I G C    +  
Sbjct: 10  RIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDIS-TFNIYISGLCRASRIGD 68

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A +  D M K G  P   TYN L+  L    +M +A  + + M + G  PD +TYN L++
Sbjct: 69  AQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLH 128

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+ G   +A  + D  + +G  P ++TY +LI    K +++ EA ++ +  +++ ++P
Sbjct: 129 GFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVP 188

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ-GKVEEARRL 242
           D+V +N+L++G C NG ++ A  L+  +D+    P+ +TY+TL+ G CR+  ++E AR+L
Sbjct: 189 DVVTYNSLVNGLCKNGRVDEARMLI--VDK-GFSPNVITYSTLISGLCRELRRLESARQL 245

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L++M   G KPD +S       YNALI GL + Q    A +L   ++ +G  P+  TY  
Sbjct: 246 LEKMVLNGCKPDIVS-------YNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNI 298

Query: 303 LIEGIASVDKAAES 316
           LI+G+   D+  E+
Sbjct: 299 LIDGLLKEDRVNEA 312



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 162/309 (52%), Gaps = 11/309 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D  T+  ++SG+C+  R+ +A  + + M+++G  P  +TYN L+ G CN G +  A +  
Sbjct: 49  DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALY 108

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           + M+K G  P   TYN L+H      K+ EA  +     ++G VPD +TYN LING+C+ 
Sbjct: 109 ERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKA 168

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
               +A  +   M+ + + P ++TY SL+  L K  R+ EA  L  +   KG  P+++ +
Sbjct: 169 DKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITY 225

Query: 189 NALIDGHCTN-GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + LI G C     +E A  LL++M      PD V+YN L+HG  R+  V EA +L   + 
Sbjct: 226 STLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVL 285

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           R+G       + P   TYN LI GL K    + A EL   +V  G+ PD  TY   I+G+
Sbjct: 286 RQG-------YEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 338

Query: 308 ASVDKAAES 316
               +  ++
Sbjct: 339 CKAGRVEDA 347



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 154/285 (54%), Gaps = 10/285 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++PD+ TY  F+ G+CK GR+E+A  ML+ M E G VP  V++N +I+G C +  ++ A
Sbjct: 323 GLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEA 382

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M  +G  P A ++N LI       K  +A    KEM ++G+ P  +TYNIL++G
Sbjct: 383 EVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDG 442

Query: 125 YCRC---GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            C+    G  K+A +L D MI KG  P ++TY++LI  L K  ++ +A +L     AKG 
Sbjct: 443 LCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGC 502

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P++  +N+LI G C    ++ A  L   M      PD +TY T++   C+Q  V++A  
Sbjct: 503 IPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALA 562

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           L D     G+        PT   Y +LI GLC     D A +LL+
Sbjct: 563 LFDGSLEAGVV-------PTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 133/246 (54%), Gaps = 3/246 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD  ++ + ++G+CKE R++EA  +L  M+  G  P A+++NTLI G C  G 
Sbjct: 354 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER---KMVEADDMLKEMGEKGIVPDSIT 117
            + A +   EM+K+G+ PT  TYN+L+  L   R   ++ EA  +   M EKG VPD +T
Sbjct: 414 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVT 473

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y+ LI+G  + G    A  L   M  KG  P + TY SLI  L   +++ EA +LF   +
Sbjct: 474 YSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMV 533

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG +PD + +  +I   C    +++A +L        V P    Y +L+ G C   +V+
Sbjct: 534 EKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVD 593

Query: 238 EARRLL 243
           EA +LL
Sbjct: 594 EALKLL 599



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 3/212 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC---N 57
           M+++G  P++ ++ + + G C+ G+ ++A    ++M + G+ PT VTYN L+DG C    
Sbjct: 389 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 448

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++ A +  D M+++G +P   TY+ LI  L    K+ +A  +L  M  KG +P+  T
Sbjct: 449 EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYT 508

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LI+G C      +A  L   M+ KG  P  +TY ++I  L KQ  + +A  LF+  L
Sbjct: 509 YNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSL 568

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             G++P   M+ +LIDG C    ++ A  LL+
Sbjct: 569 EAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 170/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY + + G C  G+L EA+R+ ++M    ++P  VT+N L+DG C +G 
Sbjct: 262 MVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGM 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M ++G  P A TYN L+    +  +M EA  +L  M  KG  P+  +YNI
Sbjct: 322 VSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNI 381

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A  L  EM  K + P  +TY++L+  L +  R  EA  LF+   + G
Sbjct: 382 LINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSG 441

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ ++ L+DG C +G+++ A  LLKEM   ++ P+ + Y  L+ G    GK+E A+
Sbjct: 442 LLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAK 501

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++   GI+PD         TYN +I+GL K    D A E  R+M   G  PD  +Y
Sbjct: 502 ELFSKLSADGIRPD-------IWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSY 554

Query: 301 FSLIEGI 307
             +I+G 
Sbjct: 555 NVIIQGF 561



 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 170/304 (55%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+QPD+ T+ + ++G+C EG+++EA  +  +M  +G  P  ++YNT+I+G C  GN  MA
Sbjct: 161 GIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMA 220

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M +    P   TYN +I  L  +R + EA + L EM ++GI PD +TYN +++G
Sbjct: 221 VRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHG 280

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G   +A  L  EM+ + + P  +T+  L+  L K+  + EA  + E    KG  P+
Sbjct: 281 FCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPN 340

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +NAL+DG+C +  ++ A  +L  M      P+  +YN L++G C+  ++ EA+RLL 
Sbjct: 341 AYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLS 400

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  + + PD +       TY+ L+QGLC+      A  L +EM S G+ PD   Y  L+
Sbjct: 401 EMSEKNLTPDTV-------TYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILL 453

Query: 305 EGIA 308
           +G  
Sbjct: 454 DGFC 457



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 170/340 (50%), Gaps = 28/340 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P    +G F+  + K+ +   A  +  QM   G+     + N LI+  C   +++ A S
Sbjct: 93  RPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVS 152

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M K GI P A T+N LI+ L  E K+ EA  +  EM   G  P+ I+YN +ING C
Sbjct: 153 VMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLC 212

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + GN   A  +  +M     +P ++TY ++I  L K   + EA +     + +G+ PD+V
Sbjct: 213 KNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVV 272

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N ++ G C+ G +  A  L KEM    V PD VT+N L+ G C++G V EAR + + M
Sbjct: 273 TYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETM 332

Query: 247 KRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEG 278
             +G +P+  ++N                            P   +YN LI G CK++  
Sbjct: 333 TEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRM 392

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           + A+ LL EM  K +TPD  TY +L++G+  V +  E+ N
Sbjct: 393 NEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALN 432



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 135/258 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +P++YTY + + G C   +++EA ++L  M   G  P   +YN LI+GYC    
Sbjct: 332 MTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKR 391

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM ++ + P   TY+ L+  L    +  EA ++ KEM   G++PD + Y+I
Sbjct: 392 MNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSI 451

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G+  +A  L  EM  + I+P ++ YT LI  +    ++  A +LF    A G
Sbjct: 452 LLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADG 511

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N +I G    G  + A+   ++M+     PD  +YN ++ G  +      A 
Sbjct: 512 IRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAI 571

Query: 241 RLLDQMKRRGIKPDHISF 258
           +L+D+M  +    D  +F
Sbjct: 572 QLIDEMVGKRFSADSSTF 589



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 110/227 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  +Y   ++G CK  R+ EA R+L +M E  L P  VTY+TL+ G C  G 
Sbjct: 367 MIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGR 426

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM   G++P    Y++L+        + EA  +LKEM E+ I P+ I Y I
Sbjct: 427 PREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTI 486

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G    G  + A  L  ++   GI+P + TY  +I  L K+    EA + F      G
Sbjct: 487 LIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDG 546

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            LPD   +N +I G   N +   A  L+ EM   +   D  T+  L+
Sbjct: 547 FLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLL 593



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+ TY + + G+C+ GR  EA  + ++M  +GL+P  + Y+ L+DG+C  G+
Sbjct: 402 MSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGH 461

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM ++ I P    Y +LI  + +  K+  A ++  ++   GI PD  TYN+
Sbjct: 462 LDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNV 521

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  + G + +A+    +M   G  P   +Y  +I    +      A QL +  + K 
Sbjct: 522 MIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKR 581

Query: 181 MLPDIVMFNALID 193
              D   F  L+D
Sbjct: 582 FSADSSTFQMLLD 594


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++P+  TY S +  +C  GR  +ASR+L  M E  + P  VT++ LID +  +G 
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+K+ I P   TY+ LI+   M  ++ EA  M + M  K   P+ +TYN 
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+     +   L  EM  +G+    +TYT+LI    +      A  +F+  ++ G
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPDI+ ++ L+DG C NG +E A  + + + R K+ PD  TYN ++ G C+ GKVE+  
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGW 521

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ +       TY  ++ G C+    + A+ L REM  +G  PD  TY
Sbjct: 522 DLFCSLSLKGVKPNVV-------TYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTY 574

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 575 NTLIRAHLRDGDKAASA 591



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 175/313 (55%), Gaps = 7/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPDS+T+ + + G+ +  R  EA  ++++M   G  P  VTY  +++G C +G+
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A S   +M +  I P    YN +I  L   + + +A ++  EM  KGI P+ +TYN 
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C  G    A  L  +MI + I P ++T+++LI    K+ +++EA++L++  + + 
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +++LI+G C +  ++ A  + + M      P+ VTYNTL+ G C+  +V+E  
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RG+  + +       TY  LI G  + +E D A+ + ++MVS G+ PD  TY
Sbjct: 417 ELFREMSQRGLVGNTV-------TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTY 469

Query: 301 FSLIEGIASVDKA 313
             L++G+ +  K 
Sbjct: 470 SILLDGLCNNGKV 482



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 170/315 (53%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QPD  TYG  V+G+CK G ++ A  +L++M++  + P  V YNT+ID  CN  N
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKN 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   EM  +GI P   TYN LI  L    +  +A  +L +M E+ I P+ +T++ 
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEMI + I P + TY+SLI      +R+ EA  +FE  ++K 
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N LI G C    ++    L +EM +  +  + VTY TL+HG  +  + + A+
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQ 451

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  QM   G+ PD        +TY+ L+ GLC N + + A  +   +    + PD  TY
Sbjct: 452 IVFKQMVSDGVLPDI-------MTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTY 504

Query: 301 FSLIEGIASVDKAAE 315
             +IEG+    K  +
Sbjct: 505 NIMIEGMCKAGKVED 519



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 171/335 (51%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  + YTY   ++  C+  +L  A  +L +M + G  P  VT N+L++G+C+   
Sbjct: 107 MQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNR 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S   +MV+ G  P + T+N LIH L    +  EA  ++  M  KG  PD +TY I
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGI 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   A SL  +M    I+P ++ Y ++I  L     + +A  LF     KG
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N+LI   C  G    A  LL +M   K++P+ VT++ L+    ++GK+ EA 
Sbjct: 287 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 346

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +L D+M +R I PD  +++                            P  +TYN LI+G 
Sbjct: 347 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 406

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK +  D   EL REM  +G+  +  TY +LI G 
Sbjct: 407 CKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 164/320 (51%), Gaps = 12/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR   P    +   +S + K  + +    + EQM+  G+     TY+ LI+ +C +  
Sbjct: 73  VKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQ 131

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A +   +M+K G  P   T N L++      ++ +A  ++ +M E G  PDS T+N 
Sbjct: 132 LSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNT 191

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  R   A +A +L D M+ KG QP ++TY  ++  L K+  +  A  L +      
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK 251

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V++N +ID  C   N+  A +L  EMD   + P+ VTYN+L+   C  G+  +A 
Sbjct: 252 IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 311

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
           RLL  M  R I       NP  +T++ALI    K  EG L  AE+L  EM+ + I PD  
Sbjct: 312 RLLSDMIERKI-------NPNVVTFSALIDAFVK--EGKLVEAEKLYDEMIKRSIDPDIF 362

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY SLI G    D+  E+ +
Sbjct: 363 TYSSLINGFCMHDRLDEAKH 382



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 162/327 (49%), Gaps = 22/327 (6%)

Query: 5   GVQPDSYTYGSF----VSGMCKEGR-----------LEEASRMLEQMKENGLVPTAVTYN 49
           G  P S+++ SF     SG+  + R           L++A  +   M ++   P+ V ++
Sbjct: 26  GTAPPSFSHCSFWVRDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFS 85

Query: 50  TLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
            L+         ++  S  ++M   GI     TY++LI+      ++  A  +L +M + 
Sbjct: 86  KLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKL 145

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G  PD +T N L+NG+C       A SL  +M+  G QP   T+ +LI  L + NR  EA
Sbjct: 146 GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA 205

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             L +  + KG  PD+V +  +++G C  G+I+ A SLLK+M++ K+ P  V YNT++  
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C    V +A  L  +M  +GI+P+ +       TYN+LI+ LC       A  LL +M+
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVV-------TYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            + I P+  T+ +LI+      K  E+
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEA 345



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 126/247 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S ++G C   RL+EA  M E M      P  VTYNTLI G+C    
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G++    TY  LIH     R+   A  + K+M   G++PD +TY+I
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  + A  + + +    ++P + TY  +I  + K  ++ +   LF +   KG
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +  ++ G C  G  E A +L +EM      PD  TYNTL+    R G    + 
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA 591

Query: 241 RLLDQMK 247
            L+ +M+
Sbjct: 592 ELIREMR 598



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 65/118 (55%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PD YTY   + GMCK G++E+   +   +   G+ P  VTY T++ G+C KG  E A 
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEAD 556

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           +   EM ++G +P + TYN LI   L +     + ++++EM     V D+ T  ++ N
Sbjct: 557 ALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTN 614



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+P+  TY + +SG C++G  EEA  +  +MKE G +P + TYNTLI  +   G+   
Sbjct: 530 KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAA 589

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM     +  AST  L+ + L
Sbjct: 590 SAELIREMRSCRFVGDASTIGLVTNML 616


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 179/330 (54%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   + Y +   ++  CKEG + +A ++ +++ +  L PT V++NTLI+GYC  GNL+  
Sbjct: 235 GFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEG 294

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  + +M K    P   TY+ LI+ L  E KM  A  +  EM ++G++P+ + +  LI+G
Sbjct: 295 FRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHG 354

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + R G        + +M+ KG+QP ++ Y +L+    K   ++ A  + +  + +G+ PD
Sbjct: 355 HSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPD 414

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E A  + KEMD+  +  D V ++ L+ G C++G+V +A R L 
Sbjct: 415 KITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALR 474

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M R GIKPD +++                             P+ +TYN L+ GLCK  
Sbjct: 475 EMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLG 534

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   A+ LL  M++ G+ PDD TY +L+EG
Sbjct: 535 QMKNADMLLDAMLNIGVVPDDITYNTLLEG 564



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 152/270 (56%), Gaps = 8/270 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           KSR  +PD +TY + ++ +CKE +++ A  + ++M + GL+P  V + TLI G+   G +
Sbjct: 303 KSR-TRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEI 361

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           ++      +M+ +G+ P    YN L++       +V A +++  M  +G+ PD ITY  L
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTL 421

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G+CR G+ + A  +  EM   GI+   + +++L+  + K+ R+I+A++     L  G+
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGI 481

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD V +  ++D  C  G+ +  F LLKEM      P  VTYN L++G C+ G+++ A  
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADM 541

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
           LLD M   G+ PD I       TYN L++G
Sbjct: 542 LLDAMLNIGVVPDDI-------TYNTLLEG 564



 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 146/274 (53%), Gaps = 7/274 (2%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
           ++ + G       +N L++ +C +GN+  A    DE+ K+ + PT  ++N LI+      
Sbjct: 230 EILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVG 289

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
            + E   +  +M +    PD  TY+ LIN  C+      A  L DEM  +G+ P  + +T
Sbjct: 290 NLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFT 349

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           +LI   S+   +    + ++  L+KG+ PDIV++N L++G C NG++  A +++  M R 
Sbjct: 350 TLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRR 409

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + PD++TY TL+ G CR G VE A  +  +M + GI+ D + F       +AL+ G+CK
Sbjct: 410 GLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGF-------SALVCGMCK 462

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                 AE  LREM+  GI PDD TY  +++   
Sbjct: 463 EGRVIDAERALREMLRAGIKPDDVTYTMMMDAFC 496



 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 119/205 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+QPD   Y + V+G CK G L  A  +++ M   GL P  +TY TLIDG+C  G+
Sbjct: 371 MLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGD 430

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   R EM + GI      ++ L+  +  E ++++A+  L+EM   GI PD +TY +
Sbjct: 431 VETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTM 490

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++ +C+ G+A+  F L  EM   G  P+++TY  L+  L K  +M  AD L +  L  G
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIG 550

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
           ++PD + +N L++GH  + N  + +
Sbjct: 551 VVPDDITYNTLLEGHHRHANSSKRY 575



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 3/258 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+   + + + G  + G ++      ++M   GL P  V YNTL++G+C  G+
Sbjct: 336 MCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGD 395

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +  D M+++G+ P   TY  LI        +  A ++ KEM + GI  D + ++ 
Sbjct: 396 LVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSA 455

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+ G    A     EM+  GI+P  +TYT ++    K+       +L +   + G
Sbjct: 456 LVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDG 515

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P +V +N L++G C  G ++ A  LL  M  + V PD++TYNTL+ G  R      ++
Sbjct: 516 HVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHA--NSSK 573

Query: 241 RLLDQMKRRGIKPDHISF 258
           R + Q    GI  D  S+
Sbjct: 574 RYI-QKPEIGIVADLASY 590


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 181/370 (48%), Gaps = 63/370 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV PD  TY + ++  C++G LEEA  +++ M   GL P   TYN +I+G C  G 
Sbjct: 123 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 182

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-------- 112
              A    DEM+K G+ P  +TYN+L+ E      M++A+ +  EM  +G+V        
Sbjct: 183 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSA 242

Query: 113 ---------------------------PDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                      PD++ Y ILI G+CR G   +A  + DEM+ +G
Sbjct: 243 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 302

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               ++TY +++  L K+  + EAD+LF     +G+ PD   F  LI+G+  +GN+ +A 
Sbjct: 303 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAV 362

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS-------- 257
           +L + M +  + PD VTYNTL+ G C+  ++E+   L + M  R I P+HIS        
Sbjct: 363 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGY 422

Query: 258 --------------------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                               F  T +T N +++G C+      A+E L  M+ KGI PD 
Sbjct: 423 CNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG 482

Query: 298 NTYFSLIEGI 307
            TY +LI G 
Sbjct: 483 ITYNTLINGF 492



 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GV PD  ++ + +  + K G L++A +    MK  GL P  V Y  LI G+C  G 
Sbjct: 228 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 287

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEM++QG +    TYN +++ L  E+ + EAD++  EM E+G+ PD  T+  
Sbjct: 288 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 347

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY + GN  KA +L + MI + ++P ++TY +LI    K + M + ++L+ + +++ 
Sbjct: 348 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 407

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  LI+G+C  G +  AF L  EM         +T NT++ G CR G   +A 
Sbjct: 408 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 467

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L  M  +GI PD I++N                            P  +TYN ++ G 
Sbjct: 468 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 527

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +      AE ++ +M+ +G+ PD +TY SLI G  + +   E+
Sbjct: 528 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 571



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 175/340 (51%), Gaps = 28/340 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GVQ + YT    ++ +CK  ++E     L  M+E G+ P  VTYNTLI+ YC +G LE A
Sbjct: 92  GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 151

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   D M  +G+ P   TYN +I+ L    K + A  +L EM + G+ PD+ TYNIL+  
Sbjct: 152 FELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVE 211

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR  N   A  + DEM  +G+ P ++++++LI +LSK   + +A + F +    G+ PD
Sbjct: 212 CCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPD 271

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V++  LI G C NG +  A  +  EM       D VTYNT+++G C++  + EA  L  
Sbjct: 272 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFT 331

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M  RG+ PD  +F                             P  +TYN LI G CK  
Sbjct: 332 EMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 391

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E +   EL  +M+S+ I P+  +Y  LI G  ++   +E+
Sbjct: 392 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 431



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 168/297 (56%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   D  TY + ++G+CKE  L EA  +  +M E G+ P   T+ TLI+GY   GN
Sbjct: 298 MLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 357

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  + M+++ + P   TYN LI       +M + +++  +M  + I P+ I+Y I
Sbjct: 358 MNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 417

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC  G   +AF L DEM+ KG + T++T  +++    +    ++AD+   N L KG
Sbjct: 418 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 477

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N LI+G     N++RAF+L+ +M+   + PD +TYN +++G  RQG+++EA 
Sbjct: 478 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 537

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            ++ +M  RG+ PD       R TY +LI G         A  +  EM+ +G  PDD
Sbjct: 538 LIMLKMIERGVNPD-------RSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 587



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 165/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS+G+        S + G+ K G ++ A  + +++  +G+     T N +I+  C    
Sbjct: 53  LKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK 112

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   SF  +M ++G+ P   TYN LI+    +  + EA +++  M  KG+ P   TYN 
Sbjct: 113 IENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNA 172

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A  + DEM+  G+ P   TY  L+    + + M++A+++F+   ++G
Sbjct: 173 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 232

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F+ALI     NG +++A    ++M    + PD V Y  L+ G CR G + EA 
Sbjct: 233 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 292

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D+M  +G   D +       TYN ++ GLCK +    A+EL  EM  +G+ PD  T+
Sbjct: 293 KVRDEMLEQGCVLDVV-------TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTF 345

Query: 301 FSLIEG 306
            +LI G
Sbjct: 346 TTLING 351



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 42/284 (14%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +L E       +K  GL  +    N+L+ G    G +++A+    E+V+ G+    + Y 
Sbjct: 42  KLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGV--QVNVY- 98

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                                           T NI+IN  C+    +   S   +M  K
Sbjct: 99  --------------------------------TLNIMINALCKNQKIENTKSFLSDMEEK 126

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+ P ++TY +LI    +Q  + EA +L ++   KG+ P +  +NA+I+G C  G   RA
Sbjct: 127 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 186

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +L EM ++ + PD  TYN L+   CR   + +A R+ D+M  +G+ PD +SF      
Sbjct: 187 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSF------ 240

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            +ALI  L KN   D A +  R+M + G+ PD+  Y  LI G  
Sbjct: 241 -SALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 283


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 181/370 (48%), Gaps = 63/370 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV PD  TY + ++  C++G LEEA  +++ M   GL P   TYN +I+G C  G 
Sbjct: 280 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 339

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-------- 112
              A    DEM+K G+ P  +TYN+L+ E      M++A+ +  EM  +G+V        
Sbjct: 340 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSA 399

Query: 113 ---------------------------PDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                      PD++ Y ILI G+CR G   +A  + DEM+ +G
Sbjct: 400 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 459

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               ++TY +++  L K+  + EAD+LF     +G+ PD   F  LI+G+  +GN+ +A 
Sbjct: 460 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAV 519

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS-------- 257
           +L + M +  + PD VTYNTL+ G C+  ++E+   L + M  R I P+HIS        
Sbjct: 520 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGY 579

Query: 258 --------------------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                               F  T +T N +++G C+      A+E L  M+ KGI PD 
Sbjct: 580 CNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG 639

Query: 298 NTYFSLIEGI 307
            TY +LI G 
Sbjct: 640 ITYNTLINGF 649



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GV PD  ++ + +  + K G L++A +    MK  GL P  V Y  LI G+C  G 
Sbjct: 385 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 444

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEM++QG +    TYN +++ L  E+ + EAD++  EM E+G+ PD  T+  
Sbjct: 445 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 504

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY + GN  KA +L + MI + ++P ++TY +LI    K + M + ++L+ + +++ 
Sbjct: 505 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 564

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  LI+G+C  G +  AF L  EM         +T NT++ G CR G   +A 
Sbjct: 565 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 624

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L  M  +GI PD I++N                            P  +TYN ++ G 
Sbjct: 625 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 684

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +      AE ++ +M+ +G+ PD +TY SLI G  + +   E+
Sbjct: 685 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 728



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 168/297 (56%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   D  TY + ++G+CKE  L EA  +  +M E G+ P   T+ TLI+GY   GN
Sbjct: 455 MLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 514

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  + M+++ + P   TYN LI       +M + +++  +M  + I P+ I+Y I
Sbjct: 515 MNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 574

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC  G   +AF L DEM+ KG + T++T  +++    +    ++AD+   N L KG
Sbjct: 575 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 634

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N LI+G     N++RAF+L+ +M+   + PD +TYN +++G  RQG+++EA 
Sbjct: 635 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 694

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            ++ +M  RG+ PD       R TY +LI G         A  +  EM+ +G  PDD
Sbjct: 695 LIMLKMIERGVNPD-------RSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 744



 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 175/340 (51%), Gaps = 28/340 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GVQ + YT    ++ +CK  ++E     L  M+E G+ P  VTYNTLI+ YC +G LE A
Sbjct: 249 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 308

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   D M  +G+ P   TYN +I+ L    K + A  +L EM + G+ PD+ TYNIL+  
Sbjct: 309 FELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVE 368

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR  N   A  + DEM  +G+ P ++++++LI +LSK   + +A + F +    G+ PD
Sbjct: 369 CCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPD 428

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V++  LI G C NG +  A  +  EM       D VTYNT+++G C++  + EA  L  
Sbjct: 429 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFT 488

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M  RG+ PD  +F                             P  +TYN LI G CK  
Sbjct: 489 EMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 548

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E +   EL  +M+S+ I P+  +Y  LI G  ++   +E+
Sbjct: 549 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 588



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 165/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS+G+        S + G+ K G ++ A  + +++  +G+     T N +I+  C    
Sbjct: 210 LKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   SF  +M ++G+ P   TYN LI+    +  + EA +++  M  KG+ P   TYN 
Sbjct: 270 IENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNA 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A  + DEM+  G+ P   TY  L+    + + M++A+++F+   ++G
Sbjct: 330 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F+ALI     NG +++A    ++M    + PD V Y  L+ G CR G + EA 
Sbjct: 390 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 449

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D+M  +G   D +       TYN ++ GLCK +    A+EL  EM  +G+ PD  T+
Sbjct: 450 KVRDEMLEQGCVLDVV-------TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTF 502

Query: 301 FSLIEG 306
            +LI G
Sbjct: 503 TTLING 508



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 26/315 (8%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF------ 65
           ++ + +  + +  RL +A  ++ +M     V       +L+  Y N G+  + F      
Sbjct: 134 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRT 193

Query: 66  ------------SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
                       +FR  +  +G+  + +  N L+  L+    +  A ++ +E+   G+  
Sbjct: 194 YVQARKLREGCEAFR-VLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQV 252

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           +  T NI+IN  C+    +   S   +M  KG+ P ++TY +LI    +Q  + EA +L 
Sbjct: 253 NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 312

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           ++   KG+ P +  +NA+I+G C  G   RA  +L EM ++ + PD  TYN L+   CR 
Sbjct: 313 DSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRN 372

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             + +A R+ D+M  +G+ PD +SF       +ALI  L KN   D A +  R+M + G+
Sbjct: 373 DNMMDAERIFDEMPSQGVVPDLVSF-------SALIGLLSKNGCLDQALKYFRDMKNAGL 425

Query: 294 TPDDNTYFSLIEGIA 308
            PD+  Y  LI G  
Sbjct: 426 APDNVIYTILIGGFC 440


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 176/358 (49%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QPD  TYG+FV GMCK G    A  +L +M+E + + P  V Y+ +IDG C  G
Sbjct: 208 MVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDG 267

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               + +   EM  +GI P   TYN +I    +  +   A  +L+EM E+ I P+ +TYN
Sbjct: 268 RHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYN 327

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P  +TY S+I    KQ+R+  A+ +F     K
Sbjct: 328 ALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATK 387

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD+  F  LIDG+C    I+    LL EM R  +  + VTYNTL+HG C  G +  A
Sbjct: 388 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 447

Query: 240 RRLLDQMKRRGIKPDHISFN---------------------------------------P 260
             L  QM   G+ PD ++ N                                       P
Sbjct: 448 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 507

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             LTYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 508 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 565



 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 160/317 (50%), Gaps = 18/317 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P+  TY   + G C  GR   A R+L++M E  + P  VTYN LI+ +  +G 
Sbjct: 279 MQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGK 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TYN +I     + ++  A+DM   M  KG  PD  T+  
Sbjct: 339 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM  +G+    +TY +LI        +  A  L +  ++ G
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 458

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  N L+DG C NG ++ A  + K M + K           V PD +TYN L+ G
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 518

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L ++M  RGI PD I       TY+++I GLCK    D A ++   M 
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTI-------TYSSMIDGLCKQSRLDEATQMFVSMG 571

Query: 290 SKGITPDDNTYFSLIEG 306
           SK  +P+  T+ +LI G
Sbjct: 572 SKSFSPNVVTFNTLING 588



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 164/320 (51%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P   T+ TLIDGYC    
Sbjct: 349 MLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKR 408

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G++    TYN LIH   +   +  A D+ ++M   G+ PD +T N 
Sbjct: 409 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 468

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P +LTY  LI  L  + + +EA
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 528

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      P+ VT+NTL++G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  D I        Y  LI G  K    + A ++ +EM+
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAI-------IYITLIYGFRKVGNINGALDIFQEMI 641

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G  S
Sbjct: 642 SSGVYPDTITIRNMLTGFWS 661



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 18/299 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +T+ + + G C   R+++   +L +M   GLV   VTYNTLI G+C  G+
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
           L  A     +M+  G+ P   T N L+  L    K+ +A +M K M +            
Sbjct: 444 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN 503

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ PD +TYNILI G    G   +A  L++EM H+GI P  +TY+S+I  L KQ+R+ EA
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            Q+F +  +K   P++V FN LI+G+C  G ++    L  EM R  +  D + Y TL++G
Sbjct: 564 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 623

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
             + G +  A  +  +M   G+ PD I       T   ++ G    +E + A  +L ++
Sbjct: 624 FRKVGNINGALDIFQEMISSGVYPDTI-------TIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 164/309 (53%), Gaps = 16/309 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y++   +   C   +L  A     ++ + GL P  VT+ TL+ G C    
Sbjct: 107 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHR 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     ++  Q   P   T+  L++ L  E ++VEA  +L  M E G+ PD ITY  
Sbjct: 167 VSEAL----DLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGT 222

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
            ++G C+ G+   A +L    +E+ H  I+P ++ Y+++I  L K  R  ++  LF    
Sbjct: 223 FVDGMCKMGDTVSALNLLRKMEEISH--IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQ 280

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P+IV +N +I G C +G    A  LL+EM   K+ P+ VTYN L++   ++GK  
Sbjct: 281 DKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFF 340

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TYN++I G CK    D AE++   M +KG +PD 
Sbjct: 341 EAAELYDEMLPRGIIPNTI-------TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDV 393

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 394 FTFTTLIDG 402



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + + G C  G L  A  + +QM  +G+ P  VT NTL+DG C+ G 
Sbjct: 419 MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 478

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 479 LKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  +   M  K   P ++T+ +LI    K  R+ + 
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ D +++  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 658

Query: 230 RCRQGKVEEARRLLDQMK 247
              + ++E A  +L+ ++
Sbjct: 659 FWSKEELERAVAMLEDLQ 676



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 148/293 (50%), Gaps = 12/293 (4%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ + +N L+         ++  S   +M ++ I     ++ +
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G+ PD +T+  L++G C      +A  L     H+ 
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDL----FHQI 177

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P +LT+T+L+  L ++ R++EA  L +  +  G+ PD + +   +DG C  G+   A 
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           +LL++M+ +  + P+ V Y+ ++ G C+ G+  ++  L  +M+ +GI P+ +       T
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIV-------T 290

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           YN +I G C +     A+ LL+EM+ + I+P+  TY +LI       K  E++
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           E GE G   +S+    L +G       + A  L  +M+     P+++ +  L+  + +  
Sbjct: 39  ESGEAGFRGESLK---LRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRME 95

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           R      L++    K +  DI  F  LI   C+   +  A S   ++ ++ +HPD VT+ 
Sbjct: 96  RPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFT 155

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           TL+HG C   +V EA  L  Q+ R           P  LT+  L+ GLC+      A  L
Sbjct: 156 TLLHGLCLDHRVSEALDLFHQICR-----------PDVLTFTTLMNGLCREGRVVEAVAL 204

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           L  MV  G+ PD  TY + ++G+  +     + N
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALN 238


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 181/370 (48%), Gaps = 63/370 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV PD  TY + ++  C++G LEEA  +++ M   GL P   TYN +I+G C  G 
Sbjct: 384 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-------- 112
              A    DEM+K G+ P  +TYN+L+ E      M++A+ +  EM  +G+V        
Sbjct: 444 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSA 503

Query: 113 ---------------------------PDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                      PD++ Y ILI G+CR G   +A  + DEM+ +G
Sbjct: 504 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 563

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               ++TY +++  L K+  + EAD+LF     +G+ PD   F  LI+G+  +GN+ +A 
Sbjct: 564 CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAV 623

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS-------- 257
           +L + M +  + PD VTYNTL+ G C+  ++E+   L + M  R I P+HIS        
Sbjct: 624 TLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGY 683

Query: 258 --------------------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                               F  T +T N +++G C+      A+E L  M+ KGI PD 
Sbjct: 684 CNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDG 743

Query: 298 NTYFSLIEGI 307
            TY +LI G 
Sbjct: 744 ITYNTLINGF 753



 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 175/340 (51%), Gaps = 28/340 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GVQ + YT    ++ +CK  ++E     L  M+E G+ P  VTYNTLI+ YC +G LE A
Sbjct: 353 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 412

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   D M  +G+ P   TYN +I+ L    K + A  +L EM + G+ PD+ TYNIL+  
Sbjct: 413 FELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVE 472

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR  N   A  + DEM  +G+ P ++++++LI +LSK   + +A + F +    G+ PD
Sbjct: 473 CCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPD 532

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V++  LI G C NG +  A  +  EM       D VTYNT+++G C++  + EA  L  
Sbjct: 533 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFT 592

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M  RG+ PD  +F                             P  +TYN LI G CK  
Sbjct: 593 EMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGS 652

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E +   EL  +M+S+ I P+  +Y  LI G  ++   +E+
Sbjct: 653 EMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 692



 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 168/297 (56%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   D  TY + ++G+CKE  L EA  +  +M E G+ P   T+ TLI+GY   GN
Sbjct: 559 MLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGN 618

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  + M+++ + P   TYN LI       +M + +++  +M  + I P+ I+Y I
Sbjct: 619 MNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 678

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC  G   +AF L DEM+ KG + T++T  +++    +    ++AD+   N L KG
Sbjct: 679 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 738

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N LI+G     N++RAF+L+ +M+   + PD +TYN +++G  RQG+++EA 
Sbjct: 739 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 798

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            ++ +M  RG+ PD       R TY +LI G         A  +  EM+ +G  PDD
Sbjct: 799 LIMLKMIERGVNPD-------RSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDD 848



 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 178/344 (51%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GV PD  ++ + +  + K G L++A +    MK  GL P  V Y  LI G+C  G 
Sbjct: 489 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 548

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RDEM++QG      TYN +++ L  E+ + EAD++  EM E+G+ PD  T+  
Sbjct: 549 MSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 608

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY + GN  KA +L + MI + ++P ++TY +LI    K + M + ++L+ + +++ 
Sbjct: 609 LINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 668

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  LI+G+C  G +  AF L  EM         +T NT++ G CR G   +A 
Sbjct: 669 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 728

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             L  M  +GI PD I++N                            P  +TYN ++ G 
Sbjct: 729 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGF 788

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +      AE ++ +M+ +G+ PD +TY SLI G  + +   E+
Sbjct: 789 SRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 832



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 165/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS+G+        S + G+ K G ++ A  + +++  +G+     T N +I+  C    
Sbjct: 314 LKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK 373

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   SF  +M ++G+ P   TYN LI+    +  + EA +++  M  KG+ P   TYN 
Sbjct: 374 IENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNA 433

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A  + DEM+  G+ P   TY  L+    + + M++A+++F+   ++G
Sbjct: 434 IINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQG 493

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F+ALI     NG +++A    ++M    + PD V Y  L+ G CR G + EA 
Sbjct: 494 VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEAL 553

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D+M  +G   D +       TYN ++ GLCK +    A+EL  EM  +G+ PD  T+
Sbjct: 554 KVRDEMLEQGCXLDVV-------TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTF 606

Query: 301 FSLIEG 306
            +LI G
Sbjct: 607 TTLING 612



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 26/315 (8%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF------ 65
           ++ + +  + +  RL +A  ++ +M     V       +L+  Y N G+  + F      
Sbjct: 238 SFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRT 297

Query: 66  ------------SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
                       +FR  +  +G+  + +  N L+  L+    +  A ++ +E+   G+  
Sbjct: 298 YVQARKLREGCEAFR-VLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQV 356

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           +  T NI+IN  C+    +   S   +M  KG+ P ++TY +LI    +Q  + EA +L 
Sbjct: 357 NVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELM 416

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           ++   KG+ P +  +NA+I+G C  G   RA  +L EM ++ + PD  TYN L+   CR 
Sbjct: 417 DSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRN 476

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             + +A R+ D+M  +G+ PD +SF       +ALI  L KN   D A +  R+M + G+
Sbjct: 477 DNMMDAERIFDEMPSQGVVPDLVSF-------SALIGLLSKNGCLDQALKYFRDMKNAGL 529

Query: 294 TPDDNTYFSLIEGIA 308
            PD+  Y  LI G  
Sbjct: 530 APDNVIYTILIGGFC 544


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 176/358 (49%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QPD  TYG+FV GMCK G    A  +L +M+E + + P  V Y+ +IDG C  G
Sbjct: 208 MVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDG 267

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               + +   EM  +GI P   TYN +I    +  +   A  +L+EM E+ I P+ +TYN
Sbjct: 268 RHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYN 327

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P  +TY S+I    KQ+R+  A+ +F     K
Sbjct: 328 ALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATK 387

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD+  F  LIDG+C    I+    LL EM R  +  + VTYNTL+HG C  G +  A
Sbjct: 388 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 447

Query: 240 RRLLDQMKRRGIKPDHISFN---------------------------------------P 260
             L  QM   G+ PD ++ N                                       P
Sbjct: 448 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 507

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             LTYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 508 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 565



 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 160/317 (50%), Gaps = 18/317 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P+  TY   + G C  GR   A R+L++M E  + P  VTYN LI+ +  +G 
Sbjct: 279 MQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGK 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TYN +I     + ++  A+DM   M  KG  PD  T+  
Sbjct: 339 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM  +G+    +TY +LI        +  A  L +  ++ G
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 458

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  N L+DG C NG ++ A  + K M + K           V PD +TYN L+ G
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 518

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L ++M  RGI PD I       TY+++I GLCK    D A ++   M 
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTI-------TYSSMIDGLCKQSRLDEATQMFVSMG 571

Query: 290 SKGITPDDNTYFSLIEG 306
           SK  +P+  T+ +LI G
Sbjct: 572 SKSFSPNVVTFNTLING 588



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 164/320 (51%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P   T+ TLIDGYC    
Sbjct: 349 MLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKR 408

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G++    TYN LIH   +   +  A D+ ++M   G+ PD +T N 
Sbjct: 409 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 468

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P +LTY  LI  L  + + +EA
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 528

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      P+ VT+NTL++G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  D I        Y  LI G  K    + A ++ +EM+
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAI-------IYITLIYGFRKVGNINGALDIFQEMI 641

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G  S
Sbjct: 642 SSGVYPDTITIRNMLTGFWS 661



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 18/299 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +T+ + + G C   R+++   +L +M   GLV   VTYNTLI G+C  G+
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
           L  A     +M+  G+ P   T N L+  L    K+ +A +M K M +            
Sbjct: 444 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN 503

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ PD +TYNILI G    G   +A  L++EM H+GI P  +TY+S+I  L KQ+R+ EA
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            Q+F +  +K   P++V FN LI+G+C  G ++    L  EM R  +  D + Y TL++G
Sbjct: 564 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 623

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
             + G +  A  +  +M   G+ PD I       T   ++ G    +E + A  +L ++
Sbjct: 624 FRKVGNINGALDIFQEMISSGVYPDTI-------TIRNMLTGFWSKEELERAVAMLEDL 675



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 164/309 (53%), Gaps = 16/309 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y++   +   C   +L  A     ++ + GL P  VT+ TL+ G C    
Sbjct: 107 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHR 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     ++  Q   P   T+  L++ L  E ++VEA  +L  M E G+ PD ITY  
Sbjct: 167 VSEAL----DLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGT 222

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
            ++G C+ G+   A +L    +E+ H  I+P ++ Y+++I  L K  R  ++  LF    
Sbjct: 223 FVDGMCKMGDTVSALNLLRKMEEISH--IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQ 280

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P+IV +N +I G C +G    A  LL+EM   K+ P+ VTYN L++   ++GK  
Sbjct: 281 DKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFF 340

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TYN++I G CK    D AE++   M +KG +PD 
Sbjct: 341 EAAELYDEMLPRGIIPNTI-------TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDV 393

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 394 FTFTTLIDG 402



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 11/259 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + + G C  G L  A  + +QM  +G+ P  VT NTL+DG C+ G 
Sbjct: 419 MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 478

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 479 LKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  +   M  K   P ++T+ +LI    K  R+ + 
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 598

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ D +++  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 658

Query: 230 RCRQGKVEEARRLLDQMKR 248
              + ++E A  +L+ ++R
Sbjct: 659 FWSKEELERAVAMLEDLQR 677



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 11/227 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-----------NGLVPTAVTYN 49
           M S GV PD  T  + + G+C  G+L++A  M + M++           NG+ P  +TYN
Sbjct: 454 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYN 513

Query: 50  TLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
            LI G  N+G    A    +EM  +GI+P   TY+ +I  L  + ++ EA  M   MG K
Sbjct: 514 ILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSK 573

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
              P+ +T+N LINGYC+ G       L  EM  +GI    + Y +LI+   K   +  A
Sbjct: 574 SFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGA 633

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
             +F+  ++ G+ PD +    ++ G  +   +ERA ++L+++ R ++
Sbjct: 634 LDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQL 680



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 148/293 (50%), Gaps = 12/293 (4%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ + +N L+         ++  S   +M ++ I     ++ +
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G+ PD +T+  L++G C      +A  L     H+ 
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDL----FHQI 177

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P +LT+T+L+  L ++ R++EA  L +  +  G+ PD + +   +DG C  G+   A 
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           +LL++M+ +  + P+ V Y+ ++ G C+ G+  ++  L  +M+ +GI P+ +       T
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIV-------T 290

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           YN +I G C +     A+ LL+EM+ + I+P+  TY +LI       K  E++
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           E GE G   +S+    L +G       + A  L  +M+     P+++ +  L+  + +  
Sbjct: 39  ESGEAGFRGESLK---LRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRME 95

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           R      L++    K +  DI  F  LI   C+   +  A S   ++ ++ +HPD VT+ 
Sbjct: 96  RPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFT 155

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           TL+HG C   +V EA  L  Q+ R           P  LT+  L+ GLC+      A  L
Sbjct: 156 TLLHGLCLDHRVSEALDLFHQICR-----------PDVLTFTTLMNGLCREGRVVEAVAL 204

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           L  MV  G+ PD  TY + ++G+  +     + N
Sbjct: 205 LDRMVENGLQPDQITYGTFVDGMCKMGDTVSALN 238


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 175/340 (51%), Gaps = 39/340 (11%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG      T+ + +SG+CK G++ EA  + ++MK+ G  P  +TY TLIDGYC   N+ 
Sbjct: 466 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 525

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF  +  M ++ I P+   YN LI  L   R++VE  D+L EMG +G+ P+ +TY  LI
Sbjct: 526 QAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALI 585

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+C+ G   KAFS + EM   G+   ++  ++++  L +  R+ EA+ L +  +  G  
Sbjct: 586 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 645

Query: 183 PDI--------------------------------VMFNALIDGHCTNGNIERAFSLLKE 210
           PD                                 +++N  I G C  G ++ A      
Sbjct: 646 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSM 705

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           +      PD  TY TL+HG    G V+EA RL D+M RRG+ P+ +       TYNALI 
Sbjct: 706 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIV-------TYNALIN 758

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           GLCK++  D A+ L  ++  KG+ P+  TY +LI+G   +
Sbjct: 759 GLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKI 798



 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 177/341 (51%), Gaps = 29/341 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD +     V+  CK+G+++EA+  +++M+  G+ P  VTY++LI+GY + G++E A
Sbjct: 187 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 246

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYNILIN 123
                 M ++G+     TY LLI     + KM EA+ +L+ M E+  +VPD   Y +LI+
Sbjct: 247 KGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLID 306

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYCR G    A  L DEM+  G++  +    SLI    K+  + EA+ +    +   + P
Sbjct: 307 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 366

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +N L+DG+C  G+   AF+L  +M +  + P  +TYNTL+ G CR G  ++A ++ 
Sbjct: 367 DSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIW 426

Query: 244 DQMKRRGIKPDHI----------------------------SFNPTRLTYNALIQGLCKN 275
             M +RG+ PD +                             F  +R+T+N +I GLCK 
Sbjct: 427 HLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKM 486

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +   AEE+  +M   G +PD  TY +LI+G        ++
Sbjct: 487 GKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQA 527



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 174/376 (46%), Gaps = 60/376 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++PDSY+Y + + G C+EG   EA  + ++M + G+ PT +TYNTL+ G C  G 
Sbjct: 359 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 418

Query: 61  LEMAFSFRDEMVKQGIMP-----------------------------------TASTYNL 85
            + A      M+K+G+ P                                   +  T+N 
Sbjct: 419 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 478

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L    KMVEA+++  +M + G  PD ITY  LI+GYC+  N  +AF +   M  + 
Sbjct: 479 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 538

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P++  Y SLI  L K  R++E   L      +G+ P+IV + ALIDG C  G +++AF
Sbjct: 539 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 598

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
           S   EM    +  + +  +T++ G  R G+++EA  L+ +M   G  PDH  F       
Sbjct: 599 SSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRY 658

Query: 259 ------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                              P  + YN  I GLCK  + D A      +  KG  PD+ TY
Sbjct: 659 AAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY 718

Query: 301 FSLIEGIASVDKAAES 316
            +LI G ++     E+
Sbjct: 719 CTLIHGYSAAGNVDEA 734



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 185/348 (53%), Gaps = 32/348 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           M  +GV  +  TY   + G CK+ +++EA ++L  M+E   LVP    Y  LIDGYC  G
Sbjct: 253 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 312

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A    DEM++ G+       N LI+      ++ EA+ ++  M +  + PDS +YN
Sbjct: 313 KIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYN 372

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYCR G+  +AF+L D+M+ +GI+PT+LTY +L+  L +     +A Q++   + +
Sbjct: 373 TLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKR 432

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD V ++ L+DG     N E A +L K++         +T+NT++ G C+ GK+ EA
Sbjct: 433 GVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEA 492

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
             + D+MK  G  PD I++                            +P+   YN+LI G
Sbjct: 493 EEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISG 552

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAES 316
           L K++      +LL EM  +G+TP+  TY +LI+G      +DKA  S
Sbjct: 553 LFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 600



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ + +   S ++G CK G + EA  ++ +M +  L P + +YNTL+DGYC +G+   A
Sbjct: 328 GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEA 387

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F+  D+M+++GI PT  TYN L+  L       +A  +   M ++G+ PD + Y+ L++G
Sbjct: 388 FNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDG 447

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +  N + A +L  +++ +G   + +T+ ++I  L K  +M+EA+++F+     G  PD
Sbjct: 448 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 507

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C   N+ +AF +   M+R  + P    YN+L+ G  +  ++ E   LL 
Sbjct: 508 GITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLT 567

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  RG+ P+ +       TY ALI G CK    D A     EM   G++ +     +++
Sbjct: 568 EMGIRGLTPNIV-------TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 620

Query: 305 EGIASVDKAAESS 317
            G+  + +  E++
Sbjct: 621 SGLYRLGRIDEAN 633



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 159/313 (50%), Gaps = 18/313 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   +  S ++ + K G    A  + +QM   G+VP     + +++ +C  G 
Sbjct: 148 MGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGK 207

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F  +M   G+ P   TY+ LI+  +    +  A  +LK M EKG+  + +TY +
Sbjct: 208 VDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTL 267

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ------PTMLTYTSLIFVLSKQNRMIEADQLFE 174
           LI GYC+     +A     E + +G+Q      P    Y  LI    +  ++ +A +L +
Sbjct: 268 LIKGYCKQCKMDEA-----EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLD 322

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             L  G+  ++ + N+LI+G+C  G I  A  ++  M    + PD  +YNTL+ G CR+G
Sbjct: 323 EMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREG 382

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
              EA  L D+M + GI+       PT LTYN L++GLC+    D A ++   M+ +G+ 
Sbjct: 383 HTSEAFNLCDKMLQEGIE-------PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVA 435

Query: 295 PDDNTYFSLIEGI 307
           PD+  Y +L++G+
Sbjct: 436 PDEVGYSTLLDGL 448



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 120/250 (48%), Gaps = 32/250 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TYG+ + G CKEG L++A     +M ENGL    +  +T++ G    G 
Sbjct: 569 MGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGR 628

Query: 61  LEMAFSFRDEMVKQG--------------------------------IMPTASTYNLLIH 88
           ++ A     +MV  G                                ++P    YN+ I 
Sbjct: 629 IDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIA 688

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            L    K+ +A      +  KG VPD+ TY  LI+GY   GN  +AF L DEM+ +G+ P
Sbjct: 689 GLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVP 748

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
            ++TY +LI  L K   +  A +LF     KG+ P++V +N LIDG+C  GN++ AF L 
Sbjct: 749 NIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLK 808

Query: 209 KEMDRMKVHP 218
            +M    + P
Sbjct: 809 DKMIEEGISP 818



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 89/143 (62%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++  Y   ++G+CK G++++A R    +   G VP   TY TLI GY   GN++ AF  
Sbjct: 678 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 737

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RDEM+++G++P   TYN LI+ L     +  A  +  ++ +KG+ P+ +TYN LI+GYC+
Sbjct: 738 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 797

Query: 128 CGNAKKAFSLHDEMIHKGIQPTM 150
            GN   AF L D+MI +GI P++
Sbjct: 798 IGNMDAAFKLKDKMIEEGISPSI 820



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 10/283 (3%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           +E    PT   ++ ++  Y  KG  + A    D M K G +P+  + N L++ L+   + 
Sbjct: 116 REFAFSPT--VFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGET 173

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
             A  + ++M   GIVPD    +I++N +C+ G   +A     +M + G++P ++TY SL
Sbjct: 174 HTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSL 233

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMK 215
           I        +  A  + +    KG+  ++V +  LI G+C    ++ A  +L+ M +   
Sbjct: 234 INGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAA 293

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           + PDE  Y  L+ G CR GK+++A RLLD+M R G+K +           N+LI G CK 
Sbjct: 294 LVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTN-------LFICNSLINGYCKR 346

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            E   AE ++  MV   + PD  +Y +L++G       +E+ N
Sbjct: 347 GEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 389



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +R  V  D+++    E    P    +++++  Y   G  K A  + D M   G  P++ +
Sbjct: 102 DRGNVIWDELVGVYREFAFSP--TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRS 159

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
             SL+  L K      A  +++  +  G++PD+ M + +++  C +G ++ A   +K+M+
Sbjct: 160 CNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKME 219

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
            + V P+ VTY++L++G    G VE A+ +L  M  +G+  + +       TY  LI+G 
Sbjct: 220 NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVV-------TYTLLIKGY 272

Query: 273 CKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
           CK  + D AE++LR M  +  + PD+  Y  LI+G     K  ++
Sbjct: 273 CKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 317


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/292 (37%), Positives = 166/292 (56%), Gaps = 9/292 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY + + G CK G +E A ++L +MKE G  P  VT+++++   CN GNL  A  +  E 
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRES 166

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           V+    P +  +N+L+H L    ++ EA  M++EM E+GIVPD +TYN LI+G C+    
Sbjct: 167 VE--CAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRM 224

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           ++A  L + M+ + ++P ++TY +LI+   K      A QL E  +  G  PD+V FN+L
Sbjct: 225 EEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSL 284

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I G C    I++A  +L  M +    P+ VTYN L+ G C  G+  EA  LL +M  RGI
Sbjct: 285 ISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGI 344

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            PD I       TYN+LI   C+N + + A ++   MV +G+ PD  +Y +L
Sbjct: 345 LPDII-------TYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389



 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY S + G+CK  R+EEA ++LE M +  + P  VTYNTLI GYC  G 
Sbjct: 199 MSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGC 258

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A    + M++ G  P   T+N LI     + K+ +A ++L  M +    P+ +TYN+
Sbjct: 259 TGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNV 318

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G A +A  L  EM  +GI P ++TY SLI +  +  ++ +A Q+    + +G
Sbjct: 319 LISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERG 378

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +  L      +   + AF+LL  M      P+  T+N+LM G C   +++EAR
Sbjct: 379 VIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEAR 438

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M+R G        +P   TY  L+ GLCK    D A+E+L  MVS+GI P  ++ 
Sbjct: 439 HLLAVMRRVGC-------DPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSS 491

Query: 301 FSLIEGIA 308
            +++  +A
Sbjct: 492 GTIVHTLA 499



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 173/347 (49%), Gaps = 35/347 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG  PD  T+ S V  +C  G L  A +   +  E    P +V +N L+ G C    
Sbjct: 131 MKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKANQ 188

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM ++GI+P   TYN LI  L    +M EA  +L+ M ++ + P+ +TYN 
Sbjct: 189 LSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNT 248

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC+ G    A  L + MI  G  P ++T+ SLI    +++++ +A ++  + + KG
Sbjct: 249 LIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVL-HLMKKG 307

Query: 181 ML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  P++V +N LI G C  G    A  LL EMD   + PD +TYN+L+   CR  ++E+A
Sbjct: 308 LCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQA 367

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
            ++ + M  RG+ PD IS+                             P   T+N+L++G
Sbjct: 368 FQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEG 427

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           LC ++  D A  LL  M   G  P  +TY  L+ G+     VD A E
Sbjct: 428 LCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKE 474



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 134/266 (50%), Gaps = 30/266 (11%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           FRDE++ Q       TYN LI        M  A  +L EM E+G  PD +T++ ++   C
Sbjct: 92  FRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALC 151

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             GN  +A     E +     P  + +  L+  L K N++ EA Q+ E    +G++PD+V
Sbjct: 152 NTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVV 209

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N+LIDG C +  +E A  LL+ M + KV P+ VTYNTL++G C+ G    A +L+++M
Sbjct: 210 TYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERM 269

Query: 247 KRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEG 278
            + G  PD ++FN                            P  +TYN LI GLC     
Sbjct: 270 IQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRA 329

Query: 279 DLAEELLREMVSKGITPDDNTYFSLI 304
           + A ELL EM  +GI PD  TY SLI
Sbjct: 330 NEACELLSEMDGRGILPDIITYNSLI 355


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 166/304 (54%), Gaps = 10/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD YTYG+ + G+C+ GR+E+A  + E+M   G+ P AV +  LID +C KG+
Sbjct: 177 MSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGD 236

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       EM ++G+ P A TYN +++ L   R +  A  ++ EM   G+ PD++TY  
Sbjct: 237 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 296

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+      A  +   M+ +G+    +TYT+LI  LSK  R  +A+++    +  G
Sbjct: 297 LIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAG 356

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  +ID  C  G+++    LLKEM      P  VTYN +M+G C+ G+++ A 
Sbjct: 357 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNAD 416

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M   G+ PD I       TYN L+ G CK+ +    EEL     +KG  PD   Y
Sbjct: 417 MLLNAMINIGVSPDDI-------TYNILLDGHCKHGKVTDIEEL---KSAKGTVPDLGVY 466

Query: 301 FSLI 304
            S++
Sbjct: 467 TSIV 470



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 170/309 (55%), Gaps = 13/309 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+SRGV+    ++ + +SGMC+ G L+ A  +  +M E G+ P   TY  LI G C  G 
Sbjct: 142 MQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGR 201

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML---KEMGEKGIVPDSIT 117
           +E A    ++M  +G+ P A  + +LI       K  +A+ ML   +EM E+G+ PD++T
Sbjct: 202 IEDARGVFEKMCGRGMKPNAVVFTILIDA---HCKKGDAETMLELHREMRERGVRPDAVT 258

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN ++NG CR  + K A  +  EM   G++P  +TYT+LI    K+  +  A ++ +N +
Sbjct: 259 YNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMV 318

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           A+G+  D V + ALI G    G    A  +L EM    + PD  TY  ++   CR+G V+
Sbjct: 319 AEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVK 378

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
              RLL +M+ +G KP  +       TYN ++ G CK  +   A+ LL  M++ G++PDD
Sbjct: 379 TGLRLLKEMQNKGRKPGVV-------TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 431

Query: 298 NTYFSLIEG 306
            TY  L++G
Sbjct: 432 ITYNILLDG 440



 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 146/253 (57%), Gaps = 7/253 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A +F  +++  G+ P A  +N+L+ +L+   ++  A ++  EM  +G+    +++N +I+
Sbjct: 100 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 159

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G CR G+   A +LH  M   G+ P + TY +LI  L +  R+ +A  +FE    +GM P
Sbjct: 160 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 219

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + V+F  LID HC  G+ E    L +EM    V PD VTYN +++G CR   ++ A  ++
Sbjct: 220 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIV 279

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M+  G++PD +       TY  LI G CK +E D+A E+ + MV++G+  D+ TY +L
Sbjct: 280 VEMRSAGLRPDTV-------TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 332

Query: 304 IEGIASVDKAAES 316
           I G++   ++A++
Sbjct: 333 ISGLSKAGRSADA 345



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 139/279 (49%), Gaps = 7/279 (2%)

Query: 28  EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
           EA     Q+ + GL P A  +N L+      G L  A +  DEM  +G+  T  ++N +I
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
             +     +  A+ + + M E G+ PD  TY  LI G CR G  + A  + ++M  +G++
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 218

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P  + +T LI    K+       +L      +G+ PD V +NA+++G C   +++ A  +
Sbjct: 219 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 278

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           + EM    + PD VTY TL+ G C++ +++ A  +   M   G+  D +       TY A
Sbjct: 279 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEV-------TYTA 331

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LI GL K      AE +L EM+  G+ PD+ TY  +I+ 
Sbjct: 332 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDA 370



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 41/241 (17%)

Query: 107 GEKGIVPDSITYNIL-------------INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
            E+G++PD+ T  +L                  R   A +A + + +++  G+ P    +
Sbjct: 60  AEEGLLPDACTLVLLALRRGIRLEPTSCTGLMSRFPTAPEACAFYLQLLDAGLPPEAKLF 119

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
             L+  L +   +  A  +F+   ++G+   +V FN +I G C  G+++ A +L + M  
Sbjct: 120 NVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSE 179

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------- 259
             V PD  TY  L+ G CR G++E+AR + ++M  RG+KP+ + F               
Sbjct: 180 AGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAET 239

Query: 260 --------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                         P  +TYNA++ GLC+ ++   A  ++ EM S G+ PD  TY +LI+
Sbjct: 240 MLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLID 299

Query: 306 G 306
           G
Sbjct: 300 G 300


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 175/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+PD  TY S +  +CK GR  EA ++ + M + GL P   TY TL+ GY  KG 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    +  D MV+ GI P    +N+LI     + K+ EA  +  +M + G+ P+ +TY  
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G+   A    ++MI +G+ P ++ YTSLI  L   ++  +A++L    L +G
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG 471

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + FN++I  HC  G +  +  L   M R+ V P+ +TY+TL+ G C  GK++EA 
Sbjct: 472 ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TYN LI G C+    D A  L +EMVS G++P+  TY
Sbjct: 532 KLLSSMFSVGMKPDCV-------TYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 585 NIILQGLFHTRRTAAA 600



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 170/315 (53%), Gaps = 10/315 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M      PD ++    + G+C E R +EA  +L  M ++   G  P  V+Y T+I+G+  
Sbjct: 149 MTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G+ + A+S   EM+ + I P   TY+ +I  L   + M +A ++L  M + G++P+ +T
Sbjct: 209 EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT 268

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN +++GYC     K+A     +M   G++P ++TY SL+  L K  R  EA ++F++  
Sbjct: 269 YNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT 328

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ PDI  +  L+ G+ T G +    +LL  M R  +HPD   +N L+    +Q KV+
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  +  +M++ G+       NP  +TY A+I  LCK+   D A     +M+ +G+TP+ 
Sbjct: 389 EAMLVFSKMRQHGL-------NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNI 441

Query: 298 NTYFSLIEGIASVDK 312
             Y SLI  +   DK
Sbjct: 442 IVYTSLIHSLCIFDK 456



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 169/347 (48%), Gaps = 42/347 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  TY S ++ +CK   +++A  +L  M +NG++P  +TYN+++ GYC+   
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQ 281

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  +   M ++G+ PD  TY  
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCT 341

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ--------------------------------- 147
           L+ GY   G   +  +L D M+  GI                                  
Sbjct: 342 LLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHG 401

Query: 148 --PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P ++TY ++I +L K   + +A   FE  + +G+ P+I+++ +LI   C     ++A 
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAE 461

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+ EM    +  + + +N+++H  C++G+V E+ +L D M R G+KP+ I       TY
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVI-------TY 514

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + LI G C   + D A +LL  M S G+ PD  TY +LI G   V +
Sbjct: 515 STLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSR 561



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD + +   +    K+ +++EA  +  +M+++GL P  VTY  +I   C  G+
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + ++M+ +G+ P    Y  LIH L +  K  +A++++ EM ++GI  ++I +N 
Sbjct: 422 VDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L  +  + G
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD V +N LI+G+C    ++ A +L KEM    V P+ +TYN ++ G     +   A+
Sbjct: 542 MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 601

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   + + G + +         TYN ++ GLCKN   D A  + + +    +  +  T+
Sbjct: 602 ELYVGITKSGTQLE-------LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654

Query: 301 FSLIEGIASVDKAAESSN 318
             +I  +  V +  E+ +
Sbjct: 655 NIMIGALLKVGRNDEAKD 672



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 166/318 (52%), Gaps = 17/318 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P  +TYG  +   C+ GRL+     L  + + G    A+T+  L+ G C   + +  M
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
               R  M +   MP   +  +L+  L  E +  EA ++L  M +    G  PD ++Y  
Sbjct: 143 DIVLR-RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTT 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G++ KA+S + EM+ + I P ++TY+S+I  L K   M +A ++    +  G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ + +N+++ G+C++   + A   LK+M    V PD VTYN+LM   C+ G+  EAR
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           ++ D M +RG++PD         TY  L+QG     +G L E   LL  MV  GI PD +
Sbjct: 322 KIFDSMTKRGLEPDIA-------TYCTLLQGYA--TKGALVEMHALLDLMVRNGIHPDHH 372

Query: 299 TYFSLIEGIASVDKAAES 316
            +  LI   A  +K  E+
Sbjct: 373 VFNILICAYAKQEKVDEA 390



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 154/355 (43%), Gaps = 53/355 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTY------------ 48
           M+  G+ P+  TYG+ +  +CK G +++A    EQM + GL P  + Y            
Sbjct: 397 MRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDK 456

Query: 49  -----------------------NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                  N++I  +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 457 WDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYST 516

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ PD +TYN LINGYCR      A +L  EM+  G
Sbjct: 517 LIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L    R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 577 VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEAL 636

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + + +    +  +  T+N ++    + G+ +EA+ L       G+ P++ ++    +  
Sbjct: 637 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR--LMAE 694

Query: 266 NALIQGL---------------CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           N + QGL               C    G L   ++RE++ +G      TY S+I+
Sbjct: 695 NIIGQGLLEELDQLFFSMEDNGCTVDSGML-NFIVRELLQRGEITRAGTYLSMID 748



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 118/245 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  TY + + G C  G+++EA+++L  M   G+ P  VTYNTLI+GYC    ++ A
Sbjct: 506 GVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDA 565

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EMV  G+ P   TYN+++  L   R+   A ++   + + G   +  TYNI+++G
Sbjct: 566 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHG 625

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  R  EA  LF  F + G++P+
Sbjct: 626 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPN 685

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  + +     G +E    L   M+      D    N ++    ++G++  A   L 
Sbjct: 686 YWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745

Query: 245 QMKRR 249
            +  +
Sbjct: 746 MIDEK 750



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 11/214 (5%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + P   TY ILI   CR G     F+    ++ KG +   +T+T L+  L    R 
Sbjct: 79  GAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRT 138

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DR-MKVHPDEVT 222
            +A D +         +PD+     L+ G C     + A  LL  M  DR     PD V+
Sbjct: 139 SDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVS 198

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y T+++G  ++G  ++A     +M  R I PD +       TY+++I  LCK Q  D A 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV-------TYSSIIAALCKGQAMDKAM 251

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E+L  MV  G+ P+  TY S++ G  S ++  E+
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEA 285



 Score = 43.9 bits (102), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 51/118 (43%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +Q ++ T+   +  + K GR +EA  +      NGLVP   TY  + +    +G LE   
Sbjct: 647 LQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELD 706

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                M   G    +   N ++ ELL   ++  A   L  + EK    ++ T ++ I+
Sbjct: 707 QLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 175/340 (51%), Gaps = 39/340 (11%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG      T+ + +SG+CK G++ EA  + ++MK+ G  P  +TY TLIDGYC   N+ 
Sbjct: 500 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 559

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF  +  M ++ I P+   YN LI  L   R++VE  D+L EMG +G+ P+ +TY  LI
Sbjct: 560 QAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALI 619

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+C+ G   KAFS + EM   G+   ++  ++++  L +  R+ EA+ L +  +  G  
Sbjct: 620 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 679

Query: 183 PDI--------------------------------VMFNALIDGHCTNGNIERAFSLLKE 210
           PD                                 +++N  I G C  G ++ A      
Sbjct: 680 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSM 739

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           +      PD  TY TL+HG    G V+EA RL D+M RRG+ P+ +       TYNALI 
Sbjct: 740 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIV-------TYNALIN 792

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           GLCK++  D A+ L  ++  KG+ P+  TY +LI+G   +
Sbjct: 793 GLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKI 832



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 173/376 (46%), Gaps = 60/376 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++PDSY+Y + + G C+EG   EA  + ++M + G+ PT +TYNTL+ G C  G 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 61  LEMAFSFRDEMVKQGIMP-----------------------------------TASTYNL 85
            + A      M+K G+ P                                   +  T+N 
Sbjct: 453 FDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L    KMVEA+++  +M + G  PD ITY  LI+GYC+  N  +AF +   M  + 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREX 572

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P++  Y SLI  L K  R++E   L      +G+ P+IV + ALIDG C  G +++AF
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
           S   EM    +  + +  +T++ G  R G+++EA  L+ +M   G  PDH  F       
Sbjct: 633 SSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRY 692

Query: 259 ------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                              P  + YN  I GLCK  + D A      +  KG  PD+ TY
Sbjct: 693 AAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY 752

Query: 301 FSLIEGIASVDKAAES 316
            +LI G ++     E+
Sbjct: 753 CTLIHGYSAAGNVDEA 768



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 176/341 (51%), Gaps = 29/341 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD +     V+  CK+G+++EA+  +++M+  G+ P  VTY++LI+GY + G++E A
Sbjct: 221 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 280

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYNILIN 123
                 M ++G+     TY LLI     + KM EA+ +L+ M E+  +VPD   Y +LI+
Sbjct: 281 KGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLID 340

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYCR G    A  L DEM+  G++  +    SLI    K+  + EA+ +    +   + P
Sbjct: 341 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 400

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +N L+DG+C  G+   AF+L  +M +  + P  +TYNTL+ G CR G  ++A ++ 
Sbjct: 401 DSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIW 460

Query: 244 DQMKRRGIKPDHI----------------------------SFNPTRLTYNALIQGLCKN 275
             M + G+ PD +                             F  +R+T+N +I GLCK 
Sbjct: 461 HLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKM 520

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +   AEE+  +M   G +PD  TY +LI+G        ++
Sbjct: 521 GKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQA 561



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 184/348 (52%), Gaps = 32/348 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           M  +GV  +  TY   + G CK+ +++EA ++L  M+E   LVP    Y  LIDGYC  G
Sbjct: 287 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 346

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A    DEM++ G+       N LI+      ++ EA+ ++  M +  + PDS +YN
Sbjct: 347 KIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYN 406

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYCR G+  +AF+L D+M+ +GI+PT+LTY +L+  L +     +A Q++   +  
Sbjct: 407 TLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKX 466

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD V ++ L+DG     N E A +L K++         +T+NT++ G C+ GK+ EA
Sbjct: 467 GVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEA 526

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
             + D+MK  G  PD I++                            +P+   YN+LI G
Sbjct: 527 EEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISG 586

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAES 316
           L K++      +LL EM  +G+TP+  TY +LI+G      +DKA  S
Sbjct: 587 LFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 171/338 (50%), Gaps = 39/338 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P    Y S +SG+ K  RL E + +L +M   GL P  VTY  LIDG+C +G 
Sbjct: 568 MEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 627

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD------ 114
           L+ AFS   EM + G+       + ++  L    ++ EA+ ++++M + G  PD      
Sbjct: 628 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLK 687

Query: 115 --------------------------SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                     +I YNI I G C+ G    A      +  KG  P
Sbjct: 688 SDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVP 747

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
              TY +LI   S    + EA +L +  L +G++P+IV +NALI+G C + N++RA  L 
Sbjct: 748 DNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLF 807

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            ++ +  + P+ VTYNTL+ G C+ G ++ A +L D+M   GI       +P+ +TY+AL
Sbjct: 808 HKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGI-------SPSVVTYSAL 860

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           I GLCK+ + + + +LL +M+  G+      Y +L++G
Sbjct: 861 INGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQG 898



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ + +   S ++G CK G + EA  ++ +M +  L P + +YNTL+DGYC +G+   A
Sbjct: 362 GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEA 421

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F+  D+M+++GI PT  TYN L+  L       +A  +   M + G+ PD + Y+ L++G
Sbjct: 422 FNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDG 481

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +  N + A +L  +++ +G   + +T+ ++I  L K  +M+EA+++F+     G  PD
Sbjct: 482 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 541

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C   N+ +AF +   M+R  + P    YN+L+ G  +  ++ E   LL 
Sbjct: 542 GITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLT 601

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  RG+ P+ +       TY ALI G CK    D A     EM   G++ +     +++
Sbjct: 602 EMGIRGLTPNIV-------TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 654

Query: 305 EGIASVDKAAESS 317
            G+  + +  E++
Sbjct: 655 SGLYRLGRIDEAN 667



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 158/313 (50%), Gaps = 18/313 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   +  S ++ + K G    A  + +QM   G+VP     + +++ +C  G 
Sbjct: 182 MGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGK 241

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F  +M   G+ P   TY+ LI+  +    +  A  +LK M EKG+  + +TY +
Sbjct: 242 VDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTL 301

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ------PTMLTYTSLIFVLSKQNRMIEADQLFE 174
           LI GYC+     +A     E + +G+Q      P    Y  LI    +  ++ +A +L +
Sbjct: 302 LIKGYCKQCKMDEA-----EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLD 356

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             L  G+  ++ + N+LI+G+C  G I  A  ++  M    + PD  +YNTL+ G CR+G
Sbjct: 357 EMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREG 416

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
              EA  L D+M + GI+       PT LTYN L++GLC+    D A ++   M+  G+ 
Sbjct: 417 HTSEAFNLCDKMLQEGIE-------PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVA 469

Query: 295 PDDNTYFSLIEGI 307
           PD+  Y +L++G+
Sbjct: 470 PDEVGYSTLLDGL 482



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 10/283 (3%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           +E    PT   ++ ++  Y  KG  + A    D M K G +P+  + N L++ L+   + 
Sbjct: 150 REFAFSPT--VFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGET 207

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
             A  + ++M   GIVPD    +I++N +C+ G   +A     +M + G++P ++TY SL
Sbjct: 208 HTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSL 267

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMK 215
           I        +  A  + +    KG+  ++V +  LI G+C    ++ A  +L+ M +   
Sbjct: 268 INGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAA 327

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           + PDE  Y  L+ G CR GK+++A RLLD+M R G+K +           N+LI G CK 
Sbjct: 328 LVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTN-------LFICNSLINGYCKR 380

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            E   AE ++  MV   + PD  +Y +L++G       +E+ N
Sbjct: 381 GEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +R  V  D+++    E    P    +++++  Y   G  K A  + D M   G  P++ +
Sbjct: 136 DRGNVIWDELVGVYREFAFSP--TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRS 193

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
             SL+  L K      A  +++  +  G++PD+ M + +++  C +G ++ A   +K+M+
Sbjct: 194 CNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKME 253

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
            + V P+ VTY++L++G    G VE A+ +L  M  +G+  + +       TY  LI+G 
Sbjct: 254 NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVV-------TYTLLIKGY 306

Query: 273 CKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
           CK  + D AE++LR M  +  + PD+  Y  LI+G     K  ++
Sbjct: 307 CKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 351


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 175/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P+  TY   V  +CK   +  A  ++++M E G  P  +T+N+L+DG+C +GN
Sbjct: 83  MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGN 142

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV +G+ P   TY+ LI  L   +K +EA ++L+EM   G+ PD+ TY+ 
Sbjct: 143 VDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSA 202

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+    ++A  +   M   G  P ++ Y+S+I    K  +++EA +  +    + 
Sbjct: 203 LIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 262

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             PD+V +N +IDG C  G I  A  +L +M +   V PD VTY+T+++G C+   + EA
Sbjct: 263 KSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEA 322

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           ++LLD+M + G  PD +       TY  +I GLCK    + AE LL+ M   G  P+  T
Sbjct: 323 QKLLDRMCKAGCNPDVV-------TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVT 375

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    K  E+
Sbjct: 376 YTTLISGLCKARKVDEA 392



 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 175/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S G  P+  TY + ++   +  +LEEA ++LE+M+E G  P  VTYN L+D  C    
Sbjct: 48  LRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 107

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M++ G  P   T+N L+        + +A  +L  M  KG+ P+ +TY+ 
Sbjct: 108 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA 167

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+     +A  + +EM   G+ P   TY++LI  L K +++ EA+Q+       G
Sbjct: 168 LIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG 227

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V+++++I   C +G +  A   L+EM + +  PD VTYNT++ G C+ GK+ EA+
Sbjct: 228 CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQ 287

Query: 241 RLLDQMKRRG-IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +LDQM+  G + PD +       TY+ +I GLCK+     A++LL  M   G  PD  T
Sbjct: 288 VILDQMQESGDVLPDVV-------TYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 340

Query: 300 YFSLIEGIASVDKAAES 316
           Y ++I+G+    +  E+
Sbjct: 341 YTTIIDGLCKCGRLEEA 357



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 158/289 (54%), Gaps = 6/289 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ GV PD++TY + + G+CK  ++EEA +ML +M  +G  P  V Y+++I  +C  G 
Sbjct: 188 MKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 247

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYN 119
           L  A     EM KQ   P   TYN +I  L    K+ EA  +L +M E G ++PD +TY+
Sbjct: 248 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYS 307

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +ING C+     +A  L D M   G  P ++TYT++I  L K  R+ EA+ L +     
Sbjct: 308 TVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 367

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P++V +  LI G C    ++ A  +++EM      P+ VTYNT+++G C  G+++EA
Sbjct: 368 GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEA 427

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           ++L+ +MK           +P   TY  ++  L  +     AE+LL +M
Sbjct: 428 QQLVQRMKD-----GRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/296 (33%), Positives = 160/296 (54%), Gaps = 10/296 (3%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C  G L  A  +LE+MK  G  P A T+  +I    N G+L+ A    D +   G  P  
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAM---DHLRSMGCDPNV 57

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            TY  LI      +K+ EA  +L+EM E+G  P+ +TYN+L++  C+      A  +  +
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           MI  G  P ++T+ SL+    K+  + +A +L    +AKGM P++V ++ALIDG C +  
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
              A  +L+EM    V PD  TY+ L+HG C+  K+EEA ++L +M   G  PD +    
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVV---- 233

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
               Y+++I   CK+ +   A++ L+EM  +  +PD  TY ++I+G+  + K AE+
Sbjct: 234 ---VYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEA 286



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 135/264 (51%), Gaps = 10/264 (3%)

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           CN G+L  A    +EM   G  P A T+  +I  +     +  A D L+ MG     P+ 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNV 57

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           +TY  LI  + R    ++A  L +EM  +G  P ++TY  L+  L K + +  A  + + 
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            +  G  P+++ FN+L+DG C  GN++ A  LL  M    + P+ VTY+ L+ G C+  K
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
             EA+ +L++MK  G+ PD         TY+ALI GLCK  + + AE++LR M   G TP
Sbjct: 178 FLEAKEVLEEMKASGVTPDA-------FTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 230

Query: 296 DDNTYFSLIEGIASVDKAAESSNS 319
           D   Y S+I       K  E+  +
Sbjct: 231 DVVVYSSIIHAFCKSGKLLEAQKT 254


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 175/340 (51%), Gaps = 39/340 (11%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG      T+ + +SG+CK G++ EA  + ++MK+ G  P  +TY TLIDGYC   N+ 
Sbjct: 500 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVG 559

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF  +  M ++ I P+   YN LI  L   R++VE  D+L EMG +G+ P+ +TY  LI
Sbjct: 560 QAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALI 619

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+C+ G   KAFS + EM   G+   ++  ++++  L +  R+ EA+ L +  +  G  
Sbjct: 620 DGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFF 679

Query: 183 PDI--------------------------------VMFNALIDGHCTNGNIERAFSLLKE 210
           PD                                 +++N  I G C  G ++ A      
Sbjct: 680 PDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSM 739

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           +      PD  TY TL+HG    G V+EA RL D+M RRG+ P+ +       TYNALI 
Sbjct: 740 LSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIV-------TYNALIN 792

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           GLCK++  D A+ L  ++  KG+ P+  TY +LI+G   +
Sbjct: 793 GLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKI 832



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 177/341 (51%), Gaps = 29/341 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD +     V+  CK+G+++EA+  +++M+  G+ P  VTY++LI+GY + G++E A
Sbjct: 221 GIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAA 280

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYNILIN 123
                 M ++G+     TY LLI     + KM EA+ +L+ M E+  +VPD   Y +LI+
Sbjct: 281 KGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLID 340

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYCR G    A  L DEM+  G++  +    SLI    K+  + EA+ +    +   + P
Sbjct: 341 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 400

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +N L+DG+C  G+   AF+L  +M +  + P  +TYNTL+ G CR G  ++A ++ 
Sbjct: 401 DSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIW 460

Query: 244 DQMKRRGIKPDHI----------------------------SFNPTRLTYNALIQGLCKN 275
             M +RG+ PD +                             F  +R+T+N +I GLCK 
Sbjct: 461 HLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKM 520

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +   AEE+  +M   G +PD  TY +LI+G        ++
Sbjct: 521 GKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQA 561



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 174/376 (46%), Gaps = 60/376 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++PDSY+Y + + G C+EG   EA  + ++M + G+ PT +TYNTL+ G C  G 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 61  LEMAFSFRDEMVKQGIMP-----------------------------------TASTYNL 85
            + A      M+K+G+ P                                   +  T+N 
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L    KMVEA+++  +M + G  PD ITY  LI+GYC+  N  +AF +   M  + 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 572

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P++  Y SLI  L K  R++E   L      +G+ P+IV + ALIDG C  G +++AF
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
           S   EM    +  + +  +T++ G  R G+++EA  L+ +M   G  PDH  F       
Sbjct: 633 SSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRY 692

Query: 259 ------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                              P  + YN  I GLCK  + D A      +  KG  PD+ TY
Sbjct: 693 AAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY 752

Query: 301 FSLIEGIASVDKAAES 316
            +LI G ++     E+
Sbjct: 753 CTLIHGYSAAGNVDEA 768



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 185/348 (53%), Gaps = 32/348 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           M  +GV  +  TY   + G CK+ +++EA ++L  M+E   LVP    Y  LIDGYC  G
Sbjct: 287 MSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTG 346

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A    DEM++ G+       N LI+      ++ EA+ ++  M +  + PDS +YN
Sbjct: 347 KIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYN 406

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYCR G+  +AF+L D+M+ +GI+PT+LTY +L+  L +     +A Q++   + +
Sbjct: 407 TLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKR 466

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD V ++ L+DG     N E A +L K++         +T+NT++ G C+ GK+ EA
Sbjct: 467 GVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEA 526

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
             + D+MK  G  PD I++                            +P+   YN+LI G
Sbjct: 527 EEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISG 586

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAES 316
           L K++      +LL EM  +G+TP+  TY +LI+G      +DKA  S
Sbjct: 587 LFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 171/338 (50%), Gaps = 39/338 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P    Y S +SG+ K  RL E + +L +M   GL P  VTY  LIDG+C +G 
Sbjct: 568 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 627

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD------ 114
           L+ AFS   EM + G+       + ++  L    ++ EA+ ++++M + G  PD      
Sbjct: 628 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLK 687

Query: 115 --------------------------SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                     +I YNI I G C+ G    A      +  KG  P
Sbjct: 688 SDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVP 747

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
              TY +LI   S    + EA +L +  L +G++P+IV +NALI+G C + N++RA  L 
Sbjct: 748 DNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLF 807

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            ++ +  + P+ VTYNTL+ G C+ G ++ A +L D+M   GI       +P+ +TY+AL
Sbjct: 808 HKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGI-------SPSVVTYSAL 860

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           I GLCK+ + + + +LL +M+  G+      Y +L++G
Sbjct: 861 INGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQG 898



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ + +   S ++G CK G + EA  ++ +M +  L P + +YNTL+DGYC +G+   A
Sbjct: 362 GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEA 421

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F+  D+M+++GI PT  TYN L+  L       +A  +   M ++G+ PD + Y+ L++G
Sbjct: 422 FNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDG 481

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +  N + A +L  +++ +G   + +T+ ++I  L K  +M+EA+++F+     G  PD
Sbjct: 482 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPD 541

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C   N+ +AF +   M+R  + P    YN+L+ G  +  ++ E   LL 
Sbjct: 542 GITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLT 601

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  RG+ P+ +       TY ALI G CK    D A     EM   G++ +     +++
Sbjct: 602 EMGIRGLTPNIV-------TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMV 654

Query: 305 EGIASVDKAAESS 317
            G+  + +  E++
Sbjct: 655 SGLYRLGRIDEAN 667



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 152/309 (49%), Gaps = 39/309 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TYG+ + G CKEG L++A     +M ENGL    +  +T++ G    G 
Sbjct: 603 MGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGR 662

Query: 61  LEMAFSFRDEMVKQG--------------------------------IMPTASTYNLLIH 88
           ++ A     +MV  G                                ++P    YN+ I 
Sbjct: 663 IDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIA 722

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            L    K+ +A      +  KG VPD+ TY  LI+GY   GN  +AF L DEM+ +G+ P
Sbjct: 723 GLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVP 782

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
            ++TY +LI  L K   +  A +LF     KG+ P++V +N LIDG+C  GN++ AF L 
Sbjct: 783 NIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLK 842

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            +M    + P  VTY+ L++G C+ G +E + +LL+QM + G+    I        Y  L
Sbjct: 843 DKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIE-------YCTL 895

Query: 269 IQGLCKNQE 277
           +QG  ++ E
Sbjct: 896 VQGYIRSGE 904



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 35/250 (14%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++  Y   ++G+CK G++++A R    +   G VP   TY TLI GY   GN++ AF  
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RDEM+++G++P   TYN LI+ L     +  A  +  ++ +KG+ P+ +TYN LI+GYC+
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 831

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   AF L D+MI +GI P+++TY+                                 
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTYS--------------------------------- 858

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
             ALI+G C +G+IER+  LL +M +  V    + Y TL+ G  R G++++  +L D M 
Sbjct: 859 --ALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMH 916

Query: 248 RRGIKPDHIS 257
            R +    IS
Sbjct: 917 IRCLSTTAIS 926



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 158/309 (51%), Gaps = 18/309 (5%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   +  S ++ + K G    A  + +QM   G+VP     + +++ +C  G ++ A
Sbjct: 186 GRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEA 245

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F  +M   G+ P   TY+ LI+  +    +  A  +LK M EKG+  + +TY +LI G
Sbjct: 246 AGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKG 305

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQ------PTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           YC+     +A     E + +G+Q      P    Y  LI    +  ++ +A +L +  L 
Sbjct: 306 YCKQCKMDEA-----EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLR 360

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+  ++ + N+LI+G+C  G I  A  ++  M    + PD  +YNTL+ G CR+G   E
Sbjct: 361 LGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSE 420

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L D+M + GI+       PT LTYN L++GLC+    D A ++   M+ +G+ PD+ 
Sbjct: 421 AFNLCDKMLQEGIE-------PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEV 473

Query: 299 TYFSLIEGI 307
            Y +L++G+
Sbjct: 474 GYSTLLDGL 482



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 10/283 (3%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           +E    PT   ++ ++  Y  KG  + A    D M K G +P+  + N L++ L+   + 
Sbjct: 150 REFAFSPTV--FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGET 207

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
             A  + ++M   GIVPD    +I++N +C+ G   +A     +M + G++P ++TY SL
Sbjct: 208 HTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSL 267

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMK 215
           I        +  A  + +    KG+  ++V +  LI G+C    ++ A  +L+ M +   
Sbjct: 268 INGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAA 327

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           + PDE  Y  L+ G CR GK+++A RLLD+M R G+K +           N+LI G CK 
Sbjct: 328 LVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTN-------LFICNSLINGYCKR 380

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            E   AE ++  MV   + PD  +Y +L++G       +E+ N
Sbjct: 381 GEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFN 423



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 90/153 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TY + ++G+CK   ++ A R+  ++ + GL P  VTYNTLIDGYC  GN
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGN 834

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF  +D+M+++GI P+  TY+ LI+ L     +  +  +L +M + G+    I Y  
Sbjct: 835 MDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCT 894

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           L+ GY R G  +K   L+D M  + +  T +++
Sbjct: 895 LVQGYIRSGEMQKIHKLYDMMHIRCLSTTAISH 927



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +R  V  D+++    E    P    +++++  Y   G  K A  + D M   G  P++ +
Sbjct: 136 DRGNVIWDELVGVYREFAFSP--TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRS 193

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
             SL+  L K      A  +++  +  G++PD+ M + +++  C +G ++ A   +K+M+
Sbjct: 194 CNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKME 253

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
            + V P+ VTY++L++G    G VE A+ +L  M  +G+  + +       TY  LI+G 
Sbjct: 254 NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVV-------TYTLLIKGY 306

Query: 273 CKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
           CK  + D AE++LR M  +  + PD+  Y  LI+G     K  ++
Sbjct: 307 CKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 351


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 182/334 (54%), Gaps = 29/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P+ +TY   +  +C + +LE+A  +L QM E GL+P  +TYN LI+GYC +G 
Sbjct: 349 MEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGM 408

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + M  + + P   TYN LI     +R + +A  +L +M E+ ++PD +TYN 
Sbjct: 409 IEDALDVVELMESRNLRPNTRTYNELIKGYC-KRNVHKAMGVLNKMLERKVLPDVVTYNS 467

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR GN   A+ L   M  +G+ P   TYTS+I  L K  R+ EA  LF++   K 
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKD 527

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++VM+ ALIDG+C  G +  A  +L++M      P+ +T+N L+HG C  GK++EA 
Sbjct: 528 VIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEAT 587

Query: 241 RLLDQMKRRGIKP------------------DHI----------SFNPTRLTYNALIQGL 272
            L ++M +  ++P                  DH              P   TY   IQ  
Sbjct: 588 LLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTY 647

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C+      AE+++ +M   G++PD  TY SLI+G
Sbjct: 648 CREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKG 681



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 174/313 (55%), Gaps = 8/313 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+ YTY   V+G CK G +EEA++ +  + E GL P   TY +LI GYC + +L+ AF
Sbjct: 214 VCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAF 273

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM  +G       Y  LIH L +ER++ EA D+  +M +    P   TY +LI   
Sbjct: 274 KVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKAL 333

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C      +A +L  EM  KGI+P + TYT LI  L  Q ++ +A +L    L KG++P++
Sbjct: 334 CGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNV 393

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +NALI+G+C  G IE A  +++ M+   + P+  TYN L+ G C++  V +A  +L++
Sbjct: 394 ITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNK 452

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  R + PD +       TYN+LI G C++   D A  LL  M  +G+ PD  TY S+I+
Sbjct: 453 MLERKVLPDVV-------TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMID 505

Query: 306 GIASVDKAAESSN 318
            +    +  E+ +
Sbjct: 506 SLCKSKRVEEACD 518



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G + +   Y   + G+C E R++EA  +  +MK++   PT  TY  LI   C    
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSER 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM ++GI P   TY +LI  L  + K+ +A ++L +M EKG++P+ ITYN 
Sbjct: 339 KSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNA 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G  + A  + + M  + ++P   TY  LI    K+N + +A  +    L + 
Sbjct: 399 LINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERK 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V +N+LIDG C +GN + A+ LL  M+   + PD  TY +++   C+  +VEEA 
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEAC 517

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D ++++ + P+ +        Y ALI G CK  + + A  +L +M+SK   P+  T+
Sbjct: 518 DLFDSLEQKDVIPNVV-------MYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTF 570

Query: 301 FSLIEGIASVDKAAESS 317
            +LI G+ +  K  E++
Sbjct: 571 NALIHGLCTDGKLKEAT 587



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 161/307 (52%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+SR ++P++ TY   + G CK   + +A  +L +M E  ++P  VTYN+LIDG C  GN
Sbjct: 419 MESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+     M  +G++P   TY  +I  L   +++ EA D+   + +K ++P+ + Y  
Sbjct: 478 FDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTA 537

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G   +A  + ++M+ K   P  LT+ +LI  L    ++ EA  L E  +   
Sbjct: 538 LIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKID 597

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +     LI     +G+ + A+   ++M      PD  TY T +   CR+G++++A 
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAE 657

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +MK  G+ PD         TY++LI+G       + A  +L+ M   G  P  +T+
Sbjct: 658 DMVAKMKENGVSPD-------LFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTF 710

Query: 301 FSLIEGI 307
            SLI+ +
Sbjct: 711 LSLIKHL 717



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 158/321 (49%), Gaps = 11/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD  TY S + G C+ G  + A R+L  M + GLVP   TY ++ID  C    
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKR 512

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D + ++ ++P    Y  LI       K+ EA  ML++M  K  +P+S+T+N 
Sbjct: 513 VEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNA 572

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  K+A  L ++M+   +QPT+ T T LI  L K      A + F+  L+ G
Sbjct: 573 LIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSG 632

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +   I  +C  G ++ A  ++ +M    V PD  TY++L+ G    G+   A 
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAF 692

Query: 241 RLLDQMKRRGIKPDHISF-----NPTRLTYNALI---QGLC---KNQEGDLAEELLREMV 289
            +L +M   G +P   +F     +   + Y  +     G+C      E D+  ELL +MV
Sbjct: 693 VVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMV 752

Query: 290 SKGITPDDNTYFSLIEGIASV 310
             G+TP+  +Y  L+ GI  +
Sbjct: 753 EHGVTPNAKSYEKLMLGICEI 773



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 47/342 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD +TY S +  +CK  R+EEA  + + +++  ++P  V Y  LIDGYC  G 
Sbjct: 488 MNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGK 547

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    ++M+ +  +P + T+N LIH L  + K+ EA  + ++M +  + P   T  I
Sbjct: 548 VNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTI 607

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G+   A+    +M+  G +P   TYT+ I    ++ R+ +A+ +       G
Sbjct: 608 LIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENG 667

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM-------HGRCRQ 233
           + PD+  +++LI G+   G    AF +LK M      P + T+ +L+       +G+ + 
Sbjct: 668 VSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKG 727

Query: 234 GK-----------VEEARRLLDQMKRRGIKPDHISF------------------------ 258
           G+            +    LL++M   G+ P+  S+                        
Sbjct: 728 GEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQ 787

Query: 259 -----NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
                +P+ L +NAL+   CK ++ + A +++ +M+  G  P
Sbjct: 788 QKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLP 829



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 146/290 (50%), Gaps = 26/290 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +PD++TY +F+   C+EGRL++A  M+ +MKENG+ P   TY++LI GY + G 
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGR 687

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL---------------MERKMVEAD---DM 102
              AF     M   G  P+  T+  LI  LL               +   M+E D   ++
Sbjct: 688 TNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVEL 747

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLS 161
           L++M E G+ P++ +Y  L+ G C  GN + A  + D M  K GI P+ L + +L+    
Sbjct: 748 LEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCC 807

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  +  EA ++ ++ +  G LP +     LI      G  ER  S+ + + +   + DE+
Sbjct: 808 KLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDEL 867

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            +  ++ G  +QG VE    L + M++ G      +F+    TY+ LI+G
Sbjct: 868 AWKIIIDGVGKQGLVEAFYELFNVMEKNG-----CTFSSQ--TYSLLIEG 910



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 158/388 (40%), Gaps = 82/388 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ + V P+   Y + + G CK G++ EA  MLE+M     +P ++T+N LI G C  G 
Sbjct: 523 LEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGK 582

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------------------------- 92
           L+ A    ++MVK  + PT ST  +LIH LL                             
Sbjct: 583 LKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTT 642

Query: 93  -------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E ++ +A+DM+ +M E G+ PD  TY+ LI GY   G    AF +   M   G
Sbjct: 643 FIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTG 702

Query: 146 IQPTMLTYTSLIFVLSKQ---------------NRMIEAD---QLFENFLAKGMLPDIVM 187
            +P+  T+ SLI  L +                + M+E D   +L E  +  G+ P+   
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKS 762

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +  L+ G C  GN+  A  +   M + + + P E+ +N L+   C+  K  EA +++D M
Sbjct: 763 YEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDM 822

Query: 247 KRRGIKPD----------------------------HISFNPTRLTYNALIQGLCKNQEG 278
              G  P                                +    L +  +I G+ K    
Sbjct: 823 ICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLV 882

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   EL   M   G T    TY  LIEG
Sbjct: 883 EAFYELFNVMEKNGCTFSSQTYSLLIEG 910



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           DS+   + +   CR  N  ++F L  ++I       +  Y +L+  L++   + E  Q++
Sbjct: 154 DSVADTLFVLDLCRKMNKDESFELKYKLI-------IGCYNTLLNSLARFGLVDEMKQVY 206

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
              L   + P+I  +N +++G+C  GN+E A   +  +    + PD  TY +L+ G C++
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQR 266

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             ++ A ++  +M  +G + + ++       Y  LI GLC  +  D A +L  +M     
Sbjct: 267 KDLDSAFKVFKEMPLKGCRRNEVA-------YTHLIHGLCVERRIDEAMDLFVKMKDDDC 319

Query: 294 TPDDNTYFSLIEGIASVDKAAESSN 318
            P   TY  LI+ +   ++ +E+ N
Sbjct: 320 YPTVRTYTVLIKALCGSERKSEALN 344


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 174/344 (50%), Gaps = 46/344 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ PD  TY S ++G CK G L+EA  +L  ++  GL PT +TYNTLIDGYC  G 
Sbjct: 375 MRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGG 434

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLL------IHELLMERKMVEADDMLKE--------- 105
           LE A   ++EMV+QG  P   TY +L      +  L M R+    D+ML +         
Sbjct: 435 LEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFF--DEMLSKGLQPDCFAY 492

Query: 106 ----------------------MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
                                 M  KGI PD++TYN++I+G C+ GN K A  L  +M+ 
Sbjct: 493 NTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVS 552

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G+QP  +TYT LI    ++  + EA +L    ++ G+ P +V +  LI   C  GN+  
Sbjct: 553 DGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYS 612

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A+   ++M  + + P+E+TYN L+H  CR G+   A     +M  RG+ P+       + 
Sbjct: 613 AYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPN-------KY 665

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           TY  LI G C+      A  L  EM   GI PD  T+ +L +G 
Sbjct: 666 TYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 709



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 167/334 (50%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P   TY + + G+ K  ++E A     +M+  GL+P  +TYN++++GYC  GN
Sbjct: 340 MENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGN 399

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     ++ + G+ PT  TYN LI        + EA  + +EM E+G  PD  TY I
Sbjct: 400 LKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTI 459

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG  +  N   A    DEM+ KG+QP    Y + I          +A QL E  + KG
Sbjct: 460 LMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKG 519

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +N +IDG C  GN++ A  L  +M    + PD +TY  L+H  C +G + EAR
Sbjct: 520 IYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEAR 579

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LL+ M   G++P  +++                             P  +TYN LI  L
Sbjct: 580 KLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHAL 639

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C+     LA     EM+ +G+ P+  TY  LI+G
Sbjct: 640 CRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDG 673



 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 8/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   +  TY   +S + +EG LE A+++++ M+ +    ++ TYN LI     +G ++  
Sbjct: 275 GCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKA-SSFTYNPLITALLERGFVQKV 333

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            + + EM  +GIMPT  TYN +IH LL   ++  A     EM   G++PD ITYN ++NG
Sbjct: 334 EALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNG 393

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ GN K+A  L  ++   G+ PT+LTY +LI    +   + EA +L E  + +G  PD
Sbjct: 394 YCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPD 453

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +  L++G     N+  A     EM    + PD   YNT +      G   +A +L +
Sbjct: 454 VCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLRE 513

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +GI PD +       TYN +I GLCK      A++L  +MVS G+ PD  TY  LI
Sbjct: 514 VMMLKGIYPDTV-------TYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLI 566

Query: 305 EG 306
             
Sbjct: 567 HA 568



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 16/305 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +   GV PD       +  +    R ++   +  +M +  + PT VTYNTL+D +  +G 
Sbjct: 199 VACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGR 258

Query: 61  LEMAFSFRDEMVKQ--GIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSI 116
            + A     EM  Q  G +    TYN++I  L  E  +  A  ++  M   +K     S 
Sbjct: 259 KDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKA---SSF 315

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-FEN 175
           TYN LI      G  +K  +L  EM ++GI PT++TY ++I  L K  + +EA QL F  
Sbjct: 316 TYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQ-VEAAQLKFAE 374

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
             A G+LPD++ +N++++G+C  GN++ A  LL ++ R  + P  +TYNTL+ G CR G 
Sbjct: 375 MRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGG 434

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +EEARRL ++M  +G  PD         TY  L+ G  K +   +A E   EM+SKG+ P
Sbjct: 435 LEEARRLKEEMVEQGCFPD-------VCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQP 487

Query: 296 DDNTY 300
           D   Y
Sbjct: 488 DCFAY 492



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 10/209 (4%)

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ PD    N ++             +++ EM+   I+PT++TY +L+    K+ R  EA
Sbjct: 203 GVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEA 262

Query: 170 DQLFENFLAKG--MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
             L +    +G   L + V +N +I      G++E A  L+  M R+       TYN L+
Sbjct: 263 SMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSM-RLSKKASSFTYNPLI 321

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
                +G V++   L  +M+  GI P       T +TYNA+I GL K+++ + A+    E
Sbjct: 322 TALLERGFVQKVEALQMEMENEGIMP-------TLVTYNAIIHGLLKSEQVEAAQLKFAE 374

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAES 316
           M + G+ PD  TY S++ G        E+
Sbjct: 375 MRAMGLLPDLITYNSMLNGYCKAGNLKEA 403


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 175/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+PD  TY S +  +CK GR  EA ++ + M + GL P   TY TL+ GY  KG 
Sbjct: 292 MRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGA 351

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    +  D MV+ GI P    +N+LI     + K+ EA  +  +M + G+ P+ +TY  
Sbjct: 352 LVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGA 411

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G+   A    ++MI +G+ P ++ YTSLI  L   ++  +A++L    L +G
Sbjct: 412 VIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRG 471

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + FN++I  HC  G +  +  L   M R+ V P+ +TY+TL+ G C  GK++EA 
Sbjct: 472 ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TYN LI G C+    D A  L +EMVS G++P+  TY
Sbjct: 532 KLLSSMFSVGMKPDCV-------TYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 585 NIILQGLFHTRRTAAA 600



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 170/315 (53%), Gaps = 10/315 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M      PD ++    + G+C E R +EA  +L  M ++   G  P  V+Y T+I+G+  
Sbjct: 149 MTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G+ + A+S   EM+ + I P   TY+ +I  L   + M +A ++L  M + G++P+ +T
Sbjct: 209 EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT 268

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN +++GYC     K+A     +M   G++P ++TY SL+  L K  R  EA ++F++  
Sbjct: 269 YNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT 328

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ PDI  +  L+ G+ T G +    +LL  M R  +HPD   +N L+    +Q KV+
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  +  +M++ G+       NP  +TY A+I  LCK+   D A     +M+ +G+TP+ 
Sbjct: 389 EAMLVFSKMRQHGL-------NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNI 441

Query: 298 NTYFSLIEGIASVDK 312
             Y SLI  +   DK
Sbjct: 442 IVYTSLIHSLCIFDK 456



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 169/347 (48%), Gaps = 42/347 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  TY S ++ +CK   +++A  +L  M +NG++P  +TYN+++ GYC+   
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQ 281

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  +   M ++G+ PD  TY  
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCT 341

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ--------------------------------- 147
           L+ GY   G   +  +L D M+  GI                                  
Sbjct: 342 LLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHG 401

Query: 148 --PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P ++TY ++I +L K   + +A   FE  + +G+ P+I+++ +LI   C     ++A 
Sbjct: 402 LNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAE 461

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+ EM    +  + + +N+++H  C++G+V E+ +L D M R G+KP+ I       TY
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVI-------TY 514

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + LI G C   + D A +LL  M S G+ PD  TY +LI G   V +
Sbjct: 515 STLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSR 561



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD + +   +    K+ +++EA  +  +M+++GL P  VTY  +I   C  G+
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + ++M+ +G+ P    Y  LIH L +  K  +A++++ EM ++GI  ++I +N 
Sbjct: 422 VDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L  +  + G
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD V +N LI+G+C    ++ A +L KEM    V P+ +TYN ++ G     +   A+
Sbjct: 542 MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 601

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   + + G + +         TYN ++ GLCKN   D A  + + +    +  +  T+
Sbjct: 602 ELYVGITKSGTQLE-------LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654

Query: 301 FSLIEGIASVDKAAESSN 318
             +I  +  V +  E+ +
Sbjct: 655 NIMIGALLKVGRNDEAKD 672



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 166/318 (52%), Gaps = 17/318 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P  +TYG  +   C+ GRL+     L  + + G    A+T+  L+ G C   + +  M
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
               R  M +   MP   +  +L+  L  E +  EA ++L  M +    G  PD ++Y  
Sbjct: 143 DIVLR-RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTT 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G++ KA+S + EM+ + I P ++TY+S+I  L K   M +A ++    +  G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ + +N+++ G+C++   + A   LK+M    V PD VTYN+LM   C+ G+  EAR
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           ++ D M +RG++PD         TY  L+QG     +G L E   LL  MV  GI PD +
Sbjct: 322 KIFDSMTKRGLEPDIA-------TYCTLLQGYA--TKGALVEMHALLDLMVRNGIHPDHH 372

Query: 299 TYFSLIEGIASVDKAAES 316
            +  LI   A  +K  E+
Sbjct: 373 VFNILICAYAKQEKVDEA 390



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 51/354 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTY------------ 48
           M+  G+ P+  TYG+ +  +CK G +++A    EQM + GL P  + Y            
Sbjct: 397 MRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDK 456

Query: 49  -----------------------NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                  N++I  +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 457 WDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYST 516

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ PD +TYN LINGYCR      A +L  EM+  G
Sbjct: 517 LIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L    R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 577 VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEAL 636

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + + +    +  +  T+N ++    + G+ +EA+ L   +   G+ PD  ++  + +  
Sbjct: 637 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY--SLMAE 694

Query: 266 NALIQGLCK--------------NQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           N + QGL +                   +   ++R+++ +G      TY S+I+
Sbjct: 695 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMID 748



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 119/245 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  TY + + G C  G+++EA+++L  M   G+ P  VTYNTLI+GYC    ++ A
Sbjct: 506 GVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDA 565

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EMV  G+ P   TYN+++  L   R+   A ++   + + G   +  TYNI+++G
Sbjct: 566 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHG 625

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  R  EA  LF    A G++PD
Sbjct: 626 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 685

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  ++ + +     G +E    L   M+      +    N+++    ++G +  A   L 
Sbjct: 686 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLS 745

Query: 245 QMKRR 249
            +  +
Sbjct: 746 MIDEK 750



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 11/214 (5%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + P   TY ILI   CR G     F+    ++ KG +   +T+T L+  L    R 
Sbjct: 79  GAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRT 138

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DR-MKVHPDEVT 222
            +A D +         +PD+     L+ G C     + A  LL  M  DR     PD V+
Sbjct: 139 SDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVS 198

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y T+++G  ++G  ++A     +M  R I PD +       TY+++I  LCK Q  D A 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV-------TYSSIIAALCKGQAMDKAM 251

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E+L  MV  G+ P+  TY S++ G  S ++  E+
Sbjct: 252 EVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEA 285



 Score = 41.2 bits (95), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 52/116 (44%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +Q ++ T+   +  + K GR +EA  +   +  NGLVP   TY+ + +    +G LE   
Sbjct: 647 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 706

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
                M + G    +   N ++ +LL    +  A   L  + EK    ++ T ++L
Sbjct: 707 DLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMIDEKHFSLEASTASLL 762


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++PD +TY S +S +C  GR  +ASR+L  M E  + P  VT++ LID +  +G 
Sbjct: 281 METKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGK 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+K+ I P   TY+ LI+   M  ++ EA  M + M  K   P+ +TYN 
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++   L  EM  +G+    +TY +LI  L +      A ++F+  ++ G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C  G +E+A  + + + + K+ PD  TYN ++ G C+ GKVE+  
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ I        Y  +I G C+    + A+ L REM   G  PD   Y
Sbjct: 521 DLFCSLSLKGVKPNVI-------IYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCY 573

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 574 NTLIRARLRDGDKAASA 590



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 173/315 (54%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QPD  TYG+ V+G+CK G ++ A  +L++M++  +    V YNT+IDG C   +
Sbjct: 211 MVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF+  ++M  +GI P   TYN LI  L    +  +A  +L  M E+ I P+ +T++ 
Sbjct: 271 IDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSA 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEMI + I P + TY+SLI      +R+ EA  +FE  ++K 
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N LI G C    +E    L +EM +  +  + VTYNTL+ G  + G  + A+
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M   G+ PD I       TY+ L+ GLCK  + + A  +   +    + PD  TY
Sbjct: 451 KIFKKMVSDGVPPDII-------TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503

Query: 301 FSLIEGIASVDKAAE 315
             +IEG+    K  +
Sbjct: 504 NIMIEGMCKAGKVED 518



 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 174/312 (55%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ T+ + + G+    +  EA  +++QM + G  P  VTY  +++G C +G+
Sbjct: 176 MVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGD 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A S   +M K  I      YN +I  L   + + +A  +  +M  KGI PD  TYN 
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNS 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L   MI + I P ++T+++LI    K+ +++EA++L++  + + 
Sbjct: 296 LISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 355

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +++LI+G C +  ++ A  + + M      P+ VTYNTL+ G C+  +VEE  
Sbjct: 356 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RG+  + +       TYN LIQGL +  + D+A+++ ++MVS G+ PD  TY
Sbjct: 416 ELFREMSQRGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITY 468

Query: 301 FSLIEGIASVDK 312
             L++G+    K
Sbjct: 469 SILLDGLCKYGK 480



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 172/335 (51%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++  +  D Y+Y   ++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 106 MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKR 165

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+N LIH L +  K  EA  ++ +M ++G  PD +TY  
Sbjct: 166 ISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGA 225

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   A SL  +M    I+  ++ Y ++I  L K   + +A  LF     KG
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKG 285

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N+LI   C  G    A  LL  M   K++P+ VT++ L+    ++GK+ EA 
Sbjct: 286 IRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAE 345

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +L D+M +R I PD  +++                            P  +TYN LI+G 
Sbjct: 346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK +  +   EL REM  +G+  +  TY +LI+G+
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 164/313 (52%), Gaps = 11/313 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K  + +    + E+M+   +     +YN LI+ +C +  L +A + 
Sbjct: 78  PSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T + L++     +++ +A  ++ +M E G  PD++T+N LI+G   
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFL 197

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
              A +A +L D+M+ +G QP ++TY +++  L K+  +  A  L +      +  D+V+
Sbjct: 198 HNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N +IDG C   +I+ AF+L  +M+   + PD  TYN+L+   C  G+  +A RLL  M 
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIE 305
            R I       NP  +T++ALI    K  EG L  AE+L  EM+ + I PD  TY SLI 
Sbjct: 318 ERKI-------NPNVVTFSALIDAFVK--EGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368

Query: 306 GIASVDKAAESSN 318
           G    D+  E+ +
Sbjct: 369 GFCMHDRLDEAKH 381



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 129/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S ++G C   RL+EA  M E M      P  VTYNTLI G+C    
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM ++G++    TYN LI  L        A  + K+M   G+ PD ITY+I
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  +KA  + + +    ++P + TY  +I  + K  ++ +   LF +   KG
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++++  +I G C  G  E A +L +EM      PD   YNTL+  R R G    + 
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 590

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+  G   D
Sbjct: 591 ELIKEMRSCGFVGD 604



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 10/238 (4%)

Query: 74  QGIMPTASTYNL---LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           +G+  +A++Y+    L    L+  K+ +A  +  EM +   +P  + +N L++   +   
Sbjct: 36  RGVYFSAASYDYREKLSRNALLNLKLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKK 95

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
                SL + M +  I   + +Y  LI    +++++  A  +    +  G  PDIV  ++
Sbjct: 96  FDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSS 155

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           L++G+C +  I  A +L+ +M  M   PD VT+NTL+HG     K  EA  L+DQM +RG
Sbjct: 156 LLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRG 215

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            +PD +       TY A++ GLCK  + DLA  LL++M    I  D   Y ++I+G+ 
Sbjct: 216 CQPDLV-------TYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 266



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + + G+ + G  + A ++ ++M  +G+ P  +TY+ L+DG C  G 
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    + + K  + P   TYN++I  +    K+ +  D+   +  KG+ P+ I Y  
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 540

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR G  ++A +L  EM   G  P    Y +LI    +      + +L +   + G
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCG 600

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
            + D    + +I+    +G +E+++
Sbjct: 601 FVGDASTISMVIN-MLHDGRLEKSY 624


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/322 (35%), Positives = 178/322 (55%), Gaps = 7/322 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   D  TY + + G+C E R+ EA+ +   M++ G  P A+TY TL+ G C  GN
Sbjct: 373 MIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGN 432

Query: 61  LEMAFSFRDEMV----KQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           + +A     EM+    + GI   PT  +Y+++I  L  +R+  EA ++ +EM  +GI+PD
Sbjct: 433 INIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPD 492

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            I+Y  LI+G+C  G  +KA  L +EM+  GIQP + T + LI +L K+ ++IEA++L E
Sbjct: 493 VISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLE 552

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G + D+V    L+ G C    I +A  L  +M ++   P+ VT  TLM G C+ G
Sbjct: 553 VVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSG 612

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            ++ A  L   M      P  I+  P  ++Y+ +I GLCK    D A EL +EM + G+ 
Sbjct: 613 NIKIALELHKNM-LSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVI 671

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           PD  +Y SLI G     K  ++
Sbjct: 672 PDVISYTSLIHGFCRSGKWKDA 693



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 181/325 (55%), Gaps = 15/325 (4%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG   D  T  + V G+C + R+ +A+++  +M++ G +P  VT  TL+ G C  GN+++
Sbjct: 557 RGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKI 616

Query: 64  AFSFRDEMVKQ----GI--MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           A      M+      GI   P A +Y+++I  L    +  EA ++ KEM   G++PD I+
Sbjct: 617 ALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVIS 676

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI+G+CR G  K A  L +EM+  G+QP + T++ LI +L K+ ++IEA++L E  +
Sbjct: 677 YTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMI 736

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G +P+ V +  L+ G C N  I  A  L  +M ++   PD VTY TLM G C+ G ++
Sbjct: 737 QRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIK 796

Query: 238 EA----RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            A    +++L    + G      +F P  ++Y+ +I GLCK+   D A EL +EM + G+
Sbjct: 797 TALELHKKMLSDTGQYG-----TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 851

Query: 294 TPDDNTYFSLIEGIASVDKAAESSN 318
            P+  +Y SLI G     K  ++ +
Sbjct: 852 IPNVISYTSLIHGFCRSGKLEDAKH 876



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 171/319 (53%), Gaps = 16/319 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G+ PD  +Y S + G C  G+ E+A  +  +M + G+ P   T   LID +C +G 
Sbjct: 191 MKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGK 250

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + MV +G +    TY+ LI  L M+ ++ EA  +   M + G  PD+I Y  
Sbjct: 251 VIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGT 310

Query: 121 LINGYCRCGNAKKAFSLHDEMIH-------KGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           L+ G C+ G    A  LH EM++       K I+P + T + LI +L K+ ++IEA++L 
Sbjct: 311 LMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELL 370

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           E  + +G + DIV ++ LI G C    I  A  L   M ++   PD +TY TLM G C+ 
Sbjct: 371 EVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQT 430

Query: 234 GKVEEARRL----LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
           G +  A +L    L+   R GIK       PT ++Y+ +I GLCK++  D A EL  EM 
Sbjct: 431 GNINIALQLHQEMLNDTGRYGIK-----CKPTLISYSIIIDGLCKDRREDEARELFEEMK 485

Query: 290 SKGITPDDNTYFSLIEGIA 308
           ++GI PD  +Y +LI G  
Sbjct: 486 AQGIMPDVISYTTLIHGFC 504



 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 178/327 (54%), Gaps = 14/327 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   D  TY + + G+C E R+ EA+ +   M++ G  P A+TY TL+ G C  GN
Sbjct: 80  MIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGN 139

Query: 61  LEMAFSFRDEMV----KQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           + +A     EM+    + GI   PT  +Y+++I  L  +R+  EA ++ KEM  +G++PD
Sbjct: 140 INIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPD 199

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            I+Y  LI+G+C  G  +KA  L +EM+  GIQP + T   LI +  K+ ++IEA++L E
Sbjct: 200 VISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLE 259

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G + DIV ++ LI G C    I  A  L   M ++   PD + Y TLM G C+ G
Sbjct: 260 VMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTG 319

Query: 235 KVEEA----RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           K+  A    + +L+   + GIK       P   T + LI  LCK  +   A ELL  M+ 
Sbjct: 320 KINIALHLHQEMLNDTSQYGIK----CIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQ 375

Query: 291 KGITPDDNTYFSLIEGIASVDKAAESS 317
           +G   D  TY +LI+G+    + +E++
Sbjct: 376 RGCILDIVTYSTLIKGLCMEHRISEAT 402



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 168/327 (51%), Gaps = 22/327 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNT---------L 51
           M+  G+ PDS+T+   ++ +C   R+ E    +  +   G +P  VTY+          L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 52  IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI 111
           ID  C +G +  A    + M+++G +    TY+ LI  L ME ++ EA  +   M + G 
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK----GI--QPTMLTYTSLIFVLSKQNR 165
            PD+ITY  L+ G C+ GN   A  LH EM++     GI  +PT+++Y+ +I  L K  R
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 180

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
             EA +LF+   A+GM+PD++ + +LI G C +G  E+A  L  EM  + + PD  T   
Sbjct: 181 EDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGV 240

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+   C++GKV EA  LL+ M  RG   D +       TY+ LI+GLC       A +L 
Sbjct: 241 LIDMFCKEGKVIEANELLEVMVHRGCILDIV-------TYSTLIKGLCMKHRISEATQLF 293

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDK 312
             M   G  PD   Y +L++G+    K
Sbjct: 294 MSMKKLGCRPDAIAYGTLMKGLCQTGK 320



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 167/288 (57%), Gaps = 15/288 (5%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P++ +Y   + G+CK GR +EA  + ++MK  G++P  ++Y +LI G+C  G  + A  
Sbjct: 636 KPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY 695

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +EMV  G+ P  +T+++LI  L  E K++EA+++L+ M ++G +P+++TY  L+ G C
Sbjct: 696 LFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLC 755

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA------KG 180
                 +A  L  +M   G  P ++TY +L+  L +   +  A +L +  L+        
Sbjct: 756 MNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTN 815

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ ++ +IDG C +G  + A  L KEM  + V P+ ++Y +L+HG CR GK+E+A+
Sbjct: 816 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 875

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
            L ++M  +G++ + +       TY+ +I G CK  EG + + L ++M
Sbjct: 876 HLFNEMVDQGVQLNAV-------TYSVMIHGFCK--EGQIDKALFQKM 914



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 139/245 (56%), Gaps = 6/245 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ GV PD  +Y S + G C+ G+ ++A  +  +M + G+ P   T++ LID  C +G 
Sbjct: 665 MKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGK 724

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M+++G +P   TY  L+  L M  ++ EA  +  +M + G +PD +TY  
Sbjct: 725 VIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGT 784

Query: 121 LINGYCRCGNAKKAFSLHDEMIH------KGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           L+ G C+ GN K A  LH +M+          +P +++Y+ +I  L K  R  EA +LF+
Sbjct: 785 LMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFK 844

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
              A G++P+++ + +LI G C +G +E A  L  EM    V  + VTY+ ++HG C++G
Sbjct: 845 EMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEG 904

Query: 235 KVEEA 239
           ++++A
Sbjct: 905 QIDKA 909



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 2/104 (1%)

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--PTRLTYNALIQGLC 273
           + PD  T+N L++  C   +V E    +  + RRG  PD ++++  P   T + LI  LC
Sbjct: 6   LFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILC 65

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           K  +   A ELL  M+ +G   D  TY +LI+G+    + +E++
Sbjct: 66  KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEAT 109


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 174/319 (54%), Gaps = 7/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD +TYG+ ++G+CK  R  EA  +L++M    L P  V Y  LIDG+  +GN
Sbjct: 283 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 342

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    EMV  G+ P   TY+ L+  L    +M  A  +LK+M      PD+ITYN+
Sbjct: 343 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNL 402

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+ R  + K AF L  EM + GI P + TY+ +I  L +     +A  L E    KG
Sbjct: 403 IIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG 462

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++  LI G+C  GN+  A  +  +M ++ V PD   YN+L+ G  + G+VEE+ 
Sbjct: 463 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEEST 522

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +   QM+ RG+ P+         TY+ LI G  KN + + AE+L++ M+  G+ P+D  Y
Sbjct: 523 KYFAQMQERGLLPN-------EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 575

Query: 301 FSLIEGIASVDKAAESSNS 319
             L+E     D   + S++
Sbjct: 576 IDLLESYFKSDDIEKVSST 594



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 166/305 (54%), Gaps = 7/305 (2%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           +GS +   CK    + A ++L +M+E G     VTYN LI G C  G +E AF F+ +M 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
             G++P   TY  LI+ L   R+  EA  +L EM    + P+ + Y  LI+G+ R GNA 
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +AF +  EM+  G+QP  +TY +L+  L K  +M  A  L +  +     PD + +N +I
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +GH  + + + AF LL EM+   + P+  TY+ ++HG C+ G+ E+A  LL++M  +G+K
Sbjct: 405 EGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 464

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           P+   + P       LI G C+     LA E+  +M    + PD   Y SLI G++ V +
Sbjct: 465 PNAFVYAP-------LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 517

Query: 313 AAESS 317
             ES+
Sbjct: 518 VEEST 522



 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 174/310 (56%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P+ YTY   + G+C+ G  E+AS +LE+M   GL P A  Y  LI GYC +GN
Sbjct: 423 MENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 482

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    D+M K  ++P    YN LI  L    ++ E+     +M E+G++P+  TY+ 
Sbjct: 483 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 542

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY + G+ + A  L   M+  G++P  + Y  L+    K + + +    F++ L +G
Sbjct: 543 LIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQG 602

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D  ++  LI    ++GN+E AF +L  +++    PD   Y++L+ G C+    E+A 
Sbjct: 603 VMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAF 662

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LD+M ++G+ P+ +        YNALI GLCK+ +   A  +   +++KG+ P+  TY
Sbjct: 663 GILDEMSKKGVDPNIV-------CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 715

Query: 301 FSLIEGIASV 310
            SLI+G   V
Sbjct: 716 TSLIDGSCKV 725



 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 175/343 (51%), Gaps = 44/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQP+  TY + V G+CK G+++ AS +L+QM  +   P  +TYN +I+G+    +
Sbjct: 353 MVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHS 412

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    EM   GI P   TY+++IH L    +  +A D+L+EM  KG+ P++  Y  
Sbjct: 413 KKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAP 472

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR GN   A  + D+M    + P +  Y SLIF LSK  R+ E+ + F     +G
Sbjct: 473 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 532

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV------------------- 221
           +LP+   ++ LI G+  NG++E A  L++ M    + P++V                   
Sbjct: 533 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 592

Query: 222 ----------------TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLT 264
                            Y  L+H     G +E A R+L  +++ G  PD H+        
Sbjct: 593 STFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV-------- 644

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           Y++LI GLCK  + + A  +L EM  KG+ P+   Y +LI+G+
Sbjct: 645 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGL 687



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 168/315 (53%), Gaps = 8/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ P+ +TY   + G  K G LE A +++++M + GL P  V Y  L++ Y    +
Sbjct: 528 MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDD 587

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E   S    M+ QG+M     Y +LIH L     M  A  +L  + + G VPD   Y+ 
Sbjct: 588 IEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSS 647

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + +KAF + DEM  KG+ P ++ Y +LI  L K   +  A  +F + LAKG
Sbjct: 648 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKG 707

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V + +LIDG C  G+I  AF L  EM    + PD   Y+ L  G    G +E+A 
Sbjct: 708 LVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 767

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+++M  RG    H S +    ++N L+ G CK  +     +LL  ++ +G+ P+  T 
Sbjct: 768 FLIEEMFLRG----HASIS----SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 819

Query: 301 FSLIEGIASVDKAAE 315
            ++I G++   K +E
Sbjct: 820 ENIISGLSEAGKLSE 834



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 154/329 (46%), Gaps = 12/329 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV  D+  YG  +  +   G +E A R+L  +++NG VP    Y++LI G C   +
Sbjct: 598 MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTAD 657

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E AF   DEM K+G+ P    YN LI  L     +  A ++   +  KG+VP+ +TY  
Sbjct: 658 REKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 717

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF L++EM+  GI P    Y+ L    S    + +A  L E    +G
Sbjct: 718 LIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG 777

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I  FN L+DG C  G ++    LL  +    + P+ +T   ++ G    GK+ E  
Sbjct: 778 H-ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVH 836

Query: 241 RLLDQMKRRGIKPDHISFNPTRL-----------TYNALIQGLCKNQEGDLAEELLREMV 289
            +  +++++  +     F+   +             + +I+  CK    D A  L   +V
Sbjct: 837 TIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIV 896

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +K      ++Y ++++ +    K +E+ N
Sbjct: 897 AKSAPMGCSSYLAIVDNLCRKGKLSEALN 925



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 143/280 (51%), Gaps = 26/280 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P+   Y + + G+CK G +  A  +   +   GLVP  VTY +LIDG C  G+
Sbjct: 668 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 727

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   +EM+  GI P A  Y++L         + +A  +++EM  +G    S ++N 
Sbjct: 728 ISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASIS-SFNN 786

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA----------- 169
           L++G+C+ G  ++   L   ++ +G+ P  LT  ++I  LS+  ++ E            
Sbjct: 787 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 846

Query: 170 --------DQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
                     LF + + +G +P D+V  + +I  HC  GN+++A  +L+++   K  P  
Sbjct: 847 SESAARHFSSLFMDMINQGKIPLDVV--DDMIRDHCKEGNLDKAL-MLRDVIVAKSAPMG 903

Query: 221 VT-YNTLMHGRCRQGKVEEARRLLDQMKRRG-IKPDHISF 258
            + Y  ++   CR+GK+ EA  LL +M +RG ++P  ++ 
Sbjct: 904 CSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVAL 943


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 166/304 (54%), Gaps = 10/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD YTYG+ + G+C+ GR+E+A  + E+M   G+ P AV +  LID +C KG+
Sbjct: 301 MSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGD 360

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       EM ++G+ P A TYN +++ L   R +  A  ++ EM   G+ PD++TY  
Sbjct: 361 AETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 420

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+      A  +   M+ +G+    +TYT+LI  LSK  R  +A+++    +  G
Sbjct: 421 LIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAG 480

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  +ID  C  G+++    LLKEM      P  VTYN +M+G C+ G+++ A 
Sbjct: 481 LEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNAD 540

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M   G+ PD I       TYN L+ G CK+ +    EEL     +KG  PD   Y
Sbjct: 541 MLLNAMINIGVSPDDI-------TYNILLDGHCKHGKVTDIEEL---KSAKGTVPDLGVY 590

Query: 301 FSLI 304
            S++
Sbjct: 591 TSIV 594



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 170/309 (55%), Gaps = 13/309 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+SRGV+    ++ + +SGMC+ G L+ A  +  +M E G+ P   TY  LI G C  G 
Sbjct: 266 MQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGR 325

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML---KEMGEKGIVPDSIT 117
           +E A    ++M  +G+ P A  + +LI       K  +A+ ML   +EM E+G+ PD++T
Sbjct: 326 IEDARGVFEKMCGRGMKPNAVVFTILIDA---HCKKGDAETMLELHREMRERGVRPDAVT 382

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN ++NG CR  + K A  +  EM   G++P  +TYT+LI    K+  +  A ++ +N +
Sbjct: 383 YNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMV 442

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           A+G+  D V + ALI G    G    A  +L EM    + PD  TY  ++   CR+G V+
Sbjct: 443 AEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVK 502

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
              RLL +M+ +G KP  +       TYN ++ G CK  +   A+ LL  M++ G++PDD
Sbjct: 503 TGLRLLKEMQNKGRKPGVV-------TYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 555

Query: 298 NTYFSLIEG 306
            TY  L++G
Sbjct: 556 ITYNILLDG 564



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 146/253 (57%), Gaps = 7/253 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A +F  +++  G+ P A  +N+L+ +L+   ++  A ++  EM  +G+    +++N +I+
Sbjct: 224 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 283

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G CR G+   A +LH  M   G+ P + TY +LI  L +  R+ +A  +FE    +GM P
Sbjct: 284 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKP 343

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + V+F  LID HC  G+ E    L +EM    V PD VTYN +++G CR   ++ A  ++
Sbjct: 344 NAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIV 403

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M+  G++PD +       TY  LI G CK +E D+A E+ + MV++G+  D+ TY +L
Sbjct: 404 VEMRSAGLRPDTV-------TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 456

Query: 304 IEGIASVDKAAES 316
           I G++   ++A++
Sbjct: 457 ISGLSKAGRSADA 469



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 28  EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
           EA     Q+ + GL P A  +N L+      G L  A +  DEM  +G+  T  ++N +I
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
             +     +  A+ + + M E G+ PD  TY  LI G CR G  + A  + ++M  +G++
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 342

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P  + +T LI    K+       +L      +G+ PD V +NA+++G C   +++ A  +
Sbjct: 343 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 402

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           + EM    + PD VTY TL+ G C++ +++ A  +   M   G+  D +       TY A
Sbjct: 403 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEV-------TYTA 455

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LI GL K      AE +L EM+  G+ PD+ TY  +I+  
Sbjct: 456 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAF 495



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 41/241 (17%)

Query: 107 GEKGIVPDSITYNIL-------------INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
            E+G++PD+ T  +L                  R   A +A + + +++  G+ P    +
Sbjct: 184 AEEGLLPDACTLVLLALRRGIRLEPTSCTGLMSRFPTAPEACAFYLQLLDAGLPPEAKLF 243

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
             L+  L +   +  A  +F+   ++G+   +V FN +I G C  G+++ A +L + M  
Sbjct: 244 NVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSE 303

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------- 259
             V PD  TY  L+ G CR G++E+AR + ++M  RG+KP+ + F               
Sbjct: 304 AGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAET 363

Query: 260 --------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                         P  +TYNA++ GLC+ ++   A  ++ EM S G+ PD  TY +LI+
Sbjct: 364 MLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLID 423

Query: 306 G 306
           G
Sbjct: 424 G 424


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  207 bits (526), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TY S +  +CK GR  EA +M + M + GL P   TY TL+ GY  KG 
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++LI     + K+ +A  +  +M ++G+ PD++TY  
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G  + A    ++MI + + P  + Y SLI  L   ++  +A +L    L +G
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D + FN++ID HC  G +  +  L   M R+ V PD +TY+TL+ G C  GK++EA 
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TYN LI G CK    + A  L REM S G++PD  TY
Sbjct: 535 KLLASMVSVGMKPDCV-------TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 588 NIILQGLFQTRRTAAA 603



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 183/346 (52%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P+ ++Y   + G+C E R +EA  +L+ M ++G    P  V+Y T+I+G+  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G+L+ A+    EM+ +GI+P   TY+ +I  L   + M +A ++L  M + G++P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++GYC  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P+I  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +QGKV++
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ 392

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  +  +M+++G+ PD +++                            +P  + YN+LI 
Sbjct: 393 AMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIH 452

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            LC   + D A+EL+ EM+ +GI  D   + S+I+      +  ES
Sbjct: 453 SLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIES 498



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 166/340 (48%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TY S ++ +CK   +++A  +L  M +NG++P   TYN+++ GYC+ G 
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  M   M ++G+ P+  TY  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +   L D M+  GI P    ++ LI   +KQ ++ +A  +F     +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +  +I   C +G +E A    ++M   ++ P  + YN+L+H  C   K ++A+
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M  RGI  D I FN                            P  +TY+ LI G 
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           C   + D A +LL  MVS G+ PD  TY +LI G   + +
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ Y +   +    K+G++++A  +  +M++ GL P  VTY T+I   C  G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ + + P    YN LIH L +  K  +A +++ EM ++GI  D+I +N 
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L  + ++ G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD V +N LI+G+C    +E A  L +EM+   V PD +TYN ++ G  +  +   A+
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +   G + +         TYN ++ GLCKN   D A  + + +    +  +  T+
Sbjct: 605 ELYVGITESGTQLE-------LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 301 FSLIEGIASVDKAAESSN 318
             +I  +  V +  E+ +
Sbjct: 658 NIMIGALLKVGRNDEAKD 675



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P+  TYG  +   C  GRL+     L  + + G    A+ +  L+ G C   + +  M
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNIL 121
               R  M + G +P   +YN+L+  L  E +  EA ++L+ M + G    PD ++Y  +
Sbjct: 147 DIVLR-RMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+ + G+  KA+  + EM+ +GI P ++TY+S+I  L K   M +A ++  + +  G+
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P+   +N+++ G+C++G  + A   LK+M    V PD VTYN+LM   C+ G+  EAR+
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNT 299
           + D M +RG+KP+         TY  L+QG     +G L E   LL  MV  GI P+   
Sbjct: 326 MFDSMTKRGLKPEIT-------TYGTLLQGYA--TKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 YFSLIEGIA---SVDKA 313
           +  LI   A    VD+A
Sbjct: 377 FSILICAYAKQGKVDQA 393



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 35/289 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ +G+ PD+ TYG+ +  +CK GR+E+A R  EQM +  L P  + YN+LI        
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      D +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ PD +TYN LINGYC+    + A  L  EM   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            + + +    +  +  T+N ++    + G+ +EA+ L   +   G+ PD
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 119/250 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D+  + S +   CKEGR+ E+ ++ + M   G+ P  +TY+TLIDGYC  G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV  G+ P   TYN LI+      +M +A  + +EM   G+ PD ITYNI
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G  +      A  L+  +   G Q  + TY  ++  L K N   EA ++F+N     
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   FN +I      G  + A  L   +    + PD  TY+ +      QG +EE  
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 241 RLLDQMKRRG 250
            L   M+  G
Sbjct: 710 DLFLSMEENG 719



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 114/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA+++L  M   G+ P  VTYNTLI+GYC    +E A
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + E G   +  TYNI+++G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  R  EA  LF    A G++PD
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  ++ + +     G +E    L   M+      +    N+++    ++G +  A
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + P+  TY ILI   C  G     F+    +I KG +   + +T L+  L    R 
Sbjct: 83  GADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRT 142

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTY 223
            +A D +       G +P++  +N L+ G C     + A  LL+ M  D     PD V+Y
Sbjct: 143 SDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSY 202

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
            T+++G  ++G +++A     +M  RGI P+ +       TY+++I  LCK Q  D A E
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVV-------TYSSIIAALCKAQAMDKAME 255

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +L  MV  G+ P+  TY S++ G  S  +  E+
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 53/118 (44%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +Q ++ T+   +  + K GR +EA  +   +  NGLVP   TY+ + +    +G LE   
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                M + G    +   N ++ +LL    +  A   L  + EK    ++ T ++ ++
Sbjct: 710 DLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD +TY S + G+C   + +EAS +L +M+   ++P  VT+N L+D  C +G 
Sbjct: 264 MKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGK 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P   TY+ L++   +  ++VEA  +   M  KG  PD  +YNI
Sbjct: 324 VSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNI 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A  L +EMIH+G+ P  ++Y +LI  L +   + EA  LF+N    G
Sbjct: 384 LINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNG 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP++  ++ L+DG C  G   +AF L + M      P+ V YN L+   C+ G + +AR
Sbjct: 444 NLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDAR 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  ++  +G++P+          Y  +I GLCK    D A E  R M   G  PD+ +Y
Sbjct: 504 KLFSELFVKGLQPNA-------QIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISY 556

Query: 301 FSLIEGI 307
             +I G 
Sbjct: 557 NVIIRGF 563



 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 180/347 (51%), Gaps = 31/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG +PD YTY + ++G+CK G    A+ +L++M+E G  P  VTY+T+ID +     
Sbjct: 194 MVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRR 253

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +GI P   TYN LI  L    +  EA  +L EM    I+PD +T+N+
Sbjct: 254 VNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNV 313

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+ G   +A  +   M   G++P ++TY+SL++  S ++ ++EA +LF+  + KG
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG 373

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  +N LI+G+C    I+ A  L  EM    + P+ V+YNTL+HG C+ G + EAR
Sbjct: 374 CKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREAR 433

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L   M   G  P+  +++                            P  + YN LI  +
Sbjct: 434 NLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAM 493

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAES 316
           CK+     A +L  E+  KG+ P+   Y ++I G+     +D+A E+
Sbjct: 494 CKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEA 540



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+ YT    ++      R++ A  +L ++ + GL PT VT+ TLI+  C  G 
Sbjct: 124 MELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGK 183

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+MV +G  P   TY  +I+ L    +   A  +LK+M E G  P+ +TY+ 
Sbjct: 184 FAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYST 243

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ + +     +A  +   M  KGI P + TY SLI  L   ++  EA  L     +  
Sbjct: 244 IIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLN 303

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PDIV FN L+D  C  G +  A  +LK M  M V PD VTY++LM+G   + +V EAR
Sbjct: 304 IMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEAR 363

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D M  +G KPD  S       YN LI G CK +  D A++L  EM+ +G+TP++ +Y
Sbjct: 364 KLFDAMITKGCKPDVFS-------YNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSY 416

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI G+  +    E+ N
Sbjct: 417 NTLIHGLCQLGSLREARN 434



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 129/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PD  TY S + G      + EA ++ + M   G  P   +YN LI+GYC    
Sbjct: 334 MTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKR 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM+ QG+ P   +YN LIH L     + EA ++ K M   G +P+  TY+I
Sbjct: 394 IDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSI 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G   KAF L   M     +P ++ Y  LI  + K   + +A +LF     KG
Sbjct: 454 LLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++  +I+G C  G ++ A    + M+     PDE++YN ++ G         A 
Sbjct: 514 LQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAV 573

Query: 241 RLLDQMKRRGIKPD 254
           +L+ +M+ +G   D
Sbjct: 574 QLIGEMRDKGFIAD 587



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++ +Y + + G+C+ G L EA  + + M  NG +P   TY+ L+DG+C +G 
Sbjct: 404 MIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGY 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF     M      P    YN+LI  +     + +A  +  E+  KG+ P++  Y  
Sbjct: 464 FGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTT 523

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A      M   G  P  ++Y  +I           A QL      KG
Sbjct: 524 IINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKG 583

Query: 181 MLPDI 185
            + D+
Sbjct: 584 FIADV 588



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+QP++  Y + ++G+CKEG L+EA      M+E+G  P  ++YN +I G+ +  +   
Sbjct: 512 KGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESR 571

Query: 64  AFSFRDEMVKQGIMPTAST 82
           A     EM  +G +    T
Sbjct: 572 AVQLIGEMRDKGFIADVGT 590


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TY S +  +CK GR  EA +M + M + GL P   TY TL+ GY  KG 
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++LI     + K+ +A  +  +M ++G+ PD++TY  
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G  + A    ++MI + + P  + Y SLI  L   ++  +A +L    L +G
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D + FN++ID HC  G +  +  L   M R+ V PD +TY+TL+ G C  GK++EA 
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TYN LI G CK    + A  L REM S G++PD  TY
Sbjct: 535 KLLASMVSVGMKPDCV-------TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 588 NIILQGLFQTRRTAAA 603



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 183/346 (52%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P+ ++Y   + G+C E R +EA  +L+ M ++G    P  V+Y T+I+G+  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G+L+ A+    EM+ +GI+P   TY+ +I  L   + M +A ++L  M + G++P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++GYC  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P+I  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +QGKV++
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ 392

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  +  +M+++G+ PD +++                            +P  + YN+LI 
Sbjct: 393 AMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIH 452

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            LC   + D A+EL+ EM+ +GI  D   + S+I+      +  ES
Sbjct: 453 SLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIES 498



 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 166/340 (48%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TY S ++ +CK   +++A  +L  M +NG++P   TYN+++ GYC+ G 
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  M   M ++G+ P+  TY  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +   L D M+  GI P    ++ LI   +KQ ++ +A  +F     +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +  +I   C +G +E A    ++M   ++ P  + YN+L+H  C   K ++A+
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M  RGI  D I FN                            P  +TY+ LI G 
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           C   + D A +LL  MVS G+ PD  TY +LI G   + +
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISR 564



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ Y +   +    K+G++++A  +  +M++ GL P  VTY T+I   C  G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ + + P    YN LIH L +  K  +A +++ EM ++GI  D+I +N 
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L  + ++ G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD V +N LI+G+C    +E A  L +EM+   V PD +TYN ++ G  +  +   A+
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +   G + +         TYN ++ GLCKN   D A  + + +    +  +  T+
Sbjct: 605 ELYVGITESGTQLE-------LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 301 FSLIEGIASVDKAAESSN 318
             +I  +  V +  E+ +
Sbjct: 658 NIMIGALLKVGRNDEAKD 675



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 19/317 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P+  TYG  +   C  GRL+     L  + + G    A+ +  L+ G C   + +  M
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNIL 121
               R  M + G +P   +YN+L+  L  E +  EA ++L+ M + G    PD ++Y  +
Sbjct: 147 DIVLR-RMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+ + G+  KA+  + EM+ +GI P ++TY+S+I  L K   M +A ++  + +  G+
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P+   +N+++ G+C++G  + A   LK+M    V PD VTYN+LM   C+ G+  EAR+
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNT 299
           + D M +RG+KP+         TY  L+QG     +G L E   LL  MV  GI P+   
Sbjct: 326 MFDSMTKRGLKPEIT-------TYGTLLQGYA--TKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 YFSLIEGIA---SVDKA 313
           +  LI   A    VD+A
Sbjct: 377 FSILICAYAKQGKVDQA 393



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 35/289 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ +G+ PD+ TYG+ +  +CK GR+E+A R  EQM +  L P  + YN+LI        
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      D +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ PD +TYN LINGYC+    + A  L  EM   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            + + +    +  +  T+N ++    + G+ +EA+ L   +   G+ PD
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 119/250 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D+  + S +   CKEGR+ E+ ++ + M   G+ P  +TY+TLIDGYC  G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV  G+ P   TYN LI+      +M +A  + +EM   G+ PD ITYNI
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G  +      A  L+  +   G Q  + TY  ++  L K N   EA ++F+N     
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   FN +I      G  + A  L   +    + PD  TY+ +      QG +EE  
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 241 RLLDQMKRRG 250
            L   M+  G
Sbjct: 710 DLFLSMEENG 719



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 114/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA+++L  M   G+ P  VTYNTLI+GYC    +E A
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + E G   +  TYNI+++G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  R  EA  LF    A G++PD
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  ++ + +     G +E    L   M+      +    N+++    ++G +  A
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 10/217 (4%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           +   G   + P+  TY ILI   C  G     F+    +I KG +   + +T L+  L  
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 163 QNRMIEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPD 219
             R  +A D +       G +P++  +N L+ G C     + A  LL+ M  D     PD
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPD 198

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            V+Y T+++G  ++G +++A     +M  RGI P+ +       TY+++I  LCK Q  D
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVV-------TYSSIIAALCKAQAMD 251

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A E+L  MV  G+ P+  TY S++ G  S  +  E+
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 53/118 (44%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +Q ++ T+   +  + K GR +EA  +   +  NGLVP   TY+ + +    +G LE   
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                M + G    +   N ++ +LL    +  A   L  + EK    ++ T ++ ++
Sbjct: 710 DLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 179/341 (52%), Gaps = 28/341 (8%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   PD  TY   +   CKE  + +A ++L++M++ G  P  VTYN LI+G C +G L+ 
Sbjct: 241 RECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDE 300

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  F + M   G  P   T+N+++  +    + ++A+  L EM  KG  P  +T+NILIN
Sbjct: 301 AIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILIN 360

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             CR G   +A  + ++M   G  P  L+Y  L+  L K  +M  A +  +  +++G  P
Sbjct: 361 FLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYP 420

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DIV +N L+   C +G ++ A  +L ++      P  +TYNT++ G  + GK ++A +LL
Sbjct: 421 DIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLL 480

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
           D+MK +G+KPD I+++                            P  +TYN+++ GLCK 
Sbjct: 481 DEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKA 540

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           ++   A + L  MV++G  P + +Y  LIEG+A    A E+
Sbjct: 541 RQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEA 581



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 172/316 (54%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G  PD  TY   +SG CK G +  A ++L++M    + P  VTYNT++   C+ G 
Sbjct: 171 LEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGK 227

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D  +++   P   TY +LI     E  + +A  +L EM +KG  PD +TYN+
Sbjct: 228 LKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNV 287

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G   +A    + M   G QP ++T+  ++  +    R ++A++     + KG
Sbjct: 288 LINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG 347

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V FN LI+  C  G I RA  +L++M +    P+ ++YN L+H  C+  K+E A 
Sbjct: 348 CSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAI 407

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             LD M  RG  PD +       TYN L+  LCK+ + D+A E+L ++ SKG +P   TY
Sbjct: 408 EYLDIMVSRGCYPDIV-------TYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITY 460

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G++ V K  ++
Sbjct: 461 NTVIDGLSKVGKTDDA 476



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 168/322 (52%), Gaps = 28/322 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +PD  TY   ++G+CKEGRL+EA R L  M   G  P  +T+N ++   C+ G 
Sbjct: 273 MRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGR 332

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  F  EM+++G  P+  T+N+LI+ L  +  +  A D+L++M + G  P+S++YN 
Sbjct: 333 WMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNP 392

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+    ++A    D M+ +G  P ++TY +L+  L K  ++  A ++     +KG
Sbjct: 393 LLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKG 452

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  + A  LL EM    + PD +TY+TL+ G  R+GKV+EA 
Sbjct: 453 CSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAI 512

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
                ++  G+KP+ I++N                            PT  +Y  LI+GL
Sbjct: 513 AFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGL 572

Query: 273 CKNQEGDLAEELLREMVSKGIT 294
                   A ELL E+ S+G+ 
Sbjct: 573 AYEGLAKEALELLNELCSRGVV 594



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 152/330 (46%), Gaps = 34/330 (10%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + + G LEE  + LE M   G +P  +   +LI G C  G    A    + +   G +P 
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TYN+LI       ++  A  +L  M    + PD +TYN ++   C  G  K+A  + D
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
             + +   P ++TYT LI    K++ + +A +L +    KG  PD+V +N LI+G C  G
Sbjct: 237 RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEG 296

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A   L  M      P+ +T+N ++   C  G+  +A + L +M R+G  P  ++FN
Sbjct: 297 RLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFN 356

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P  L+YN L+  LCK+++ + A E L  MVS+
Sbjct: 357 ILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSR 416

Query: 292 GITPDDNTYFSLIEGI---ASVDKAAESSN 318
           G  PD  TY +L+  +     VD A E  N
Sbjct: 417 GCYPDIVTYNTLLTALCKDGKVDVAVEILN 446



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 10/230 (4%)

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           +  L+   ++ E    L++M  +G +PD I    LI G C+ G   KA  + + +   G 
Sbjct: 117 LRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGA 176

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P ++TY  LI    K   +  A QL +      + PD+V +N ++   C +G ++ A  
Sbjct: 177 VPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAME 233

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           +L    + + +PD +TY  L+   C++  V +A +LLD+M+ +G KPD +       TYN
Sbjct: 234 VLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVV-------TYN 286

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            LI G+CK    D A   L  M S G  P+  T+  ++  + S  +  ++
Sbjct: 287 VLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDA 336



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 69/122 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G++PD  TY + V G+ +EG+++EA      ++E G+ P A+TYN+++ G C    
Sbjct: 483 MKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQ 542

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  F   MV +G  PT ++Y +LI  L  E    EA ++L E+  +G+V  S    +
Sbjct: 543 TVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQV 602

Query: 121 LI 122
           ++
Sbjct: 603 VV 604



 Score = 42.0 bits (97), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           +EV  N  +    R G++EE  + L+ M  RG  PD I+         +LI+GLCK  + 
Sbjct: 109 EEVENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIAC-------TSLIRGLCKTGKT 161

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEG 306
             A  ++  +   G  PD  TY  LI G
Sbjct: 162 WKATRVMEILEDSGAVPDVITYNVLISG 189


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  206 bits (525), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 167/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ R  +PD   Y + + G+CK+  ++EA  +  +M   G+ P  +TY TLI G+C  G 
Sbjct: 141 IEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQ 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF   +EM+ + I P   TYN LI  L  E K+ E+ ++L  M +KG+ PD + Y+I
Sbjct: 201 LMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSI 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  +KA  +   M+  G+ P + +Y  +I  L K  R+ EA  L    L K 
Sbjct: 261 LMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKN 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD V +++LIDG C  G I     L KEM       + VTYN+L+ G C+   +++A 
Sbjct: 321 MIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAI 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +MK RGI+P+       + TY ALI GLCK       + L + ++ KG   D  TY
Sbjct: 381 ALFMKMKERGIQPN-------KYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTY 433

Query: 301 FSLIEGIA 308
             +I G+ 
Sbjct: 434 TVMISGLC 441



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 185/371 (49%), Gaps = 63/371 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G+ PD  T    ++  C  G++  +  +L ++ + G  P  +  NTL+ G C KG 
Sbjct: 36  MEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGE 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           ++ +  F D++V QG      +Y +L++ L                              
Sbjct: 96  VKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYST 155

Query: 91  ----LMERKMV-EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
               L + K+V EA D+  EM  +GI PD ITY  LI G+C  G   +AF L +EMI K 
Sbjct: 156 IIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKN 215

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P + TY +LI  L K+ ++ E+  L      KG+ PD+V+++ L+DG+C  G +++A 
Sbjct: 216 INPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAK 275

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
            +   M +  V+PD  +YN +++G C+  +V+EA  LL +M  + + PD ++++      
Sbjct: 276 QIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGL 335

Query: 260 ---------------------PTRL-TYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                P  L TYN+L+ GLCKNQ  D A  L  +M  +GI P+ 
Sbjct: 336 CKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNK 395

Query: 298 NTYFSLIEGIA 308
            TY +LI+G+ 
Sbjct: 396 YTYTALIDGLC 406



 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 169/333 (50%), Gaps = 28/333 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +G  +  + K         + +QM+  G+VP  VT + LI+ +C+ G +  +FS 
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P     N L+  L ++ ++ ++     ++  +G   D ++Y IL+NG C+
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A  L   +  +  +P ++ Y+++I  L K   + EA  L+    A+G+ PD++ 
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI G C  G +  AF LL EM    ++P+  TYNTL+   C++GKV+E++ LL  M 
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMT 247

Query: 248 RRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQEGD 279
           ++G+KPD + +                            NP   +YN +I GLCK +  D
Sbjct: 248 KKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVD 307

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            A  LLREM+ K + PD  TY SLI+G+  + +
Sbjct: 308 EAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGR 340



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 147/288 (51%), Gaps = 35/288 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+ YTY + +  +CKEG+++E+  +L  M + G+ P  V Y+ L+DGYC  G 
Sbjct: 211 MILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGE 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-- 118
           ++ A      MV+ G+ P   +YN++I+ L   +++ EA ++L+EM  K ++PD++TY  
Sbjct: 271 VQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSS 330

Query: 119 ---------------------------------NILINGYCRCGNAKKAFSLHDEMIHKG 145
                                            N L++G C+  N  KA +L  +M  +G
Sbjct: 331 LIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERG 390

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           IQP   TYT+LI  L K  R+ +   LF++ L KG   D+  +  +I G C  G  + A 
Sbjct: 391 IQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEAL 450

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
           ++  +M+     P+ VT+  ++     + + ++A +LL +M  +G+ P
Sbjct: 451 AMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TY S +  +CK GR  EA +M + M + GL P   TY TL+ GY  KG 
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++LI     + K+ +A  +  +M ++G+ PD++TY  
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G  + A    ++MI + + P  + Y SLI  L   ++  +A +L    L +G
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D + FN++ID HC  G +  +  L   M R+ V PD +TY+TL+ G C  GK++EA 
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TYN LI G CK    + A  L REM S G++PD  TY
Sbjct: 535 KLLASMVSVGMKPDCV-------TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 588 NIILQGLFQTRRTAAA 603



 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 183/346 (52%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P+ ++Y   + G+C + R +EA  +L+ M ++G    P  V+Y T+I+G+  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G+L+ A+    EM+ +GI+P   TY+ +I  L   + M +A ++L  M + G++P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++GYC  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P+I  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +QGKV++
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ 392

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  +  +M+++G+ PD +++                            +P  + YN+LI 
Sbjct: 393 AMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIH 452

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            LC   + D A+EL+ EM+ +GI  D   + S+I+      +  ES
Sbjct: 453 SLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIES 498



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 168/344 (48%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TY S ++ +CK   +++A  +L  M +NG++P   TYN+++ GYC+ G 
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  M   M ++G+ P+  TY  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +   L D M+  GI P    ++ LI   +KQ ++ +A  +F     +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +  +I   C +G +E A    ++M   ++ P  + YN+L+H  C   K ++A+
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M  RGI  D I FN                            P  +TY+ LI G 
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C   + D A +LL  MVS G+ PD  TY +LI G   + +  ++
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ Y +   +    K+G++++A  +  +M++ GL P  VTY T+I   C  G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ + + P    YN LIH L +  K  +A +++ EM ++GI  D+I +N 
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L  + ++ G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD V +N LI+G+C    +E A  L +EM+   V PD +TYN ++ G  +  +   A+
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +   G + +         TYN ++ GLCKN   D A  + + +    +  +  T+
Sbjct: 605 ELYVGITESGTQLE-------LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 301 FSLIEGIASVDKAAESSN 318
             +I  +  V +  E+ +
Sbjct: 658 NIMIGALLKVGRNDEAKD 675



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 167/317 (52%), Gaps = 16/317 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P+  TYG  +   C  GRL+     L  + + G +  A+ +  ++ G C   + +  M
Sbjct: 87  VTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAM 146

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNIL 121
               R  M + G +P   +YN+L+  L  + +  EA ++L+ M + G    PD ++Y  +
Sbjct: 147 DIVLR-RMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTV 205

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+ + G+  KA+  + EM+ +GI P ++TY+S+I  L K   M +A ++  + +  G+
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P+   +N+++ G+C++G  + A   LK+M    V PD VTYN+LM   C+ G+  EAR+
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNT 299
           + D M +RG+KP+         TY  L+QG     +G L E   LL  MV  GI P+   
Sbjct: 326 MFDSMTKRGLKPEIT-------TYGTLLQGYA--TKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 YFSLIEGIASVDKAAES 316
           +  LI   A   K  ++
Sbjct: 377 FSILICAYAKQGKVDQA 393



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 35/289 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ +G+ PD+ TYG+ +  +CK GR+E+A R  EQM +  L P  + YN+LI        
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      D +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ PD +TYN LINGYC+    + A  L  EM   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            + + +    +  +  T+N ++    + G+ +EA+ L   +   G+ PD
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 119/250 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D+  + S +   CKEGR+ E+ ++ + M   G+ P  +TY+TLIDGYC  G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV  G+ P   TYN LI+      +M +A  + +EM   G+ PD ITYNI
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G  +      A  L+  +   G Q  + TY  ++  L K N   EA ++F+N     
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   FN +I      G  + A  L   +    + PD  TY+ +      QG +EE  
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 241 RLLDQMKRRG 250
            L   M+  G
Sbjct: 710 DLFLSMEENG 719



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 114/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA+++L  M   G+ P  VTYNTLI+GYC    +E A
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + E G   +  TYNI+++G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  R  EA  LF    A G++PD
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  ++ + +     G +E    L   M+      +    N+++    ++G +  A
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + P+  TY IL+   C  G     F+    +I KG     + +T ++  L    R 
Sbjct: 83  GADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRT 142

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTY 223
            +A D +       G +P++  +N L+ G C +   + A  LL+ M  D     PD V+Y
Sbjct: 143 SDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSY 202

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
            T+++G  ++G +++A     +M  RGI P+ +       TY+++I  LCK Q  D A E
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVV-------TYSSIIAALCKAQAMDKAME 255

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +L  MV  G+ P+  TY S++ G  S  +  E+
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 178/330 (53%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   + Y +   ++  CKEG + +A ++ +++ +  L PT V++NTLI+GYC  GNL++ 
Sbjct: 235 GFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVG 294

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M K    P   TY+ LI+ L  E KM  A  +  EM E+G++P+ + +  LI+G
Sbjct: 295 FRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHG 354

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + R G        + +M+ KG+QP ++ Y +L+    K   ++ A  + +  + +G+ PD
Sbjct: 355 HSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPD 414

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +  LIDG C  G+++ A  + KEMD+  +  D V ++ L+ G C++G+V +A R L 
Sbjct: 415 KVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALR 474

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M R G+KPD +++                             P  +TYN L+ GLCK  
Sbjct: 475 EMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLG 534

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   A+ LL  M++ G+ PDD TY +L+EG
Sbjct: 535 QMKNADMLLDAMLNVGVVPDDITYNTLLEG 564



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 168/311 (54%), Gaps = 11/311 (3%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           KSR  +PD +TY + ++ +CKE +++ A R+  +M E GL+P  V + TLI G+   G +
Sbjct: 303 KSR-TRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQI 361

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           ++      +M+ +G+ P    YN L++       +V A +++  M  +G+ PD +TY  L
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTL 421

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G+CR G+   A  +  EM   GI+   + +++LI  + K+ R+I+A++     L  GM
Sbjct: 422 IDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGM 481

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD V +  ++D  C  G+ +  F LLKEM      P+ VTYN L++G C+ G+++ A  
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADM 541

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LLD M   G+ PD I       TYN L++G  ++     A +  ++    GI  D  +Y 
Sbjct: 542 LLDAMLNVGVVPDDI-------TYNTLLEGHHRHAN---ASKHYKQKPEIGIVADLASYK 591

Query: 302 SLIEGIASVDK 312
           SL+  +    K
Sbjct: 592 SLVNELYRASK 602



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 142/272 (52%), Gaps = 8/272 (2%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           K N +VP     N L+D           + F  E++  G       +N+L+++   E  +
Sbjct: 198 KHNFVVPIRGCGN-LLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNI 256

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
            +A  +  E+ ++ + P  +++N LINGYC+ GN    F L   M     +P + TY++L
Sbjct: 257 CDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSAL 316

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I  L K+N+M  A +LF     +G++P+ V+F  LI GH  NG I+      ++M    +
Sbjct: 317 INALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGL 376

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD V YNTL++G C+ G +  AR ++D M RRG++PD       ++TY  LI G C+  
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPD-------KVTYTTLIDGFCRGG 429

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + D A E+ +EM   GI  D   + +LI G+ 
Sbjct: 430 DVDTALEIRKEMDQNGIELDRVGFSALICGMC 461


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+PD  TY S +  +CK GR  EA ++ + M + GL P   TY TL+ GY  KG 
Sbjct: 184 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++L+     + K+ EA  +  +M ++G+ P+++TY  
Sbjct: 244 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGA 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G  + A    ++MI +G+ P  + Y SLI  L   N+   A++L    L +G
Sbjct: 304 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + FN++ID HC  G +  +  L   M R+ V PD +TY+TL+ G C  GK++EA 
Sbjct: 364 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TY+ LI G CK      A  L REM S G++PD  TY
Sbjct: 424 KLLASMVSVGMKPDCV-------TYSTLINGYCKISRMKDALVLFREMESSGVSPDIITY 476

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 477 NIILQGLFQTRRTAAA 492



 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD  TY S V G C  G+ +EA   L++M+ +G+ P  VTYN+L+D  C  G 
Sbjct: 149 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 208

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M K+G+ P  +TY  L+     +  +VE   +L  M   GI P+   ++I
Sbjct: 209 CTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 268

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  Y +    ++A  +  +M  +G+ P  +TY ++I +L K  R+ +A   FE  + +G
Sbjct: 269 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG 328

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  +++N+LI G CT    ERA  L+ EM    +  + + +N+++   C++G+V E+ 
Sbjct: 329 LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESE 388

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D M R G+KPD I       TY+ LI G C   + D A +LL  MVS G+ PD  TY
Sbjct: 389 KLFDLMVRIGVKPDII-------TYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 441

Query: 301 FSLIEGIASVDKAAES 316
            +LI G   + +  ++
Sbjct: 442 STLINGYCKISRMKDA 457



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 179/311 (57%), Gaps = 10/311 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNKGNL 61
           RG+ PD ++Y   ++G+C E R +EA  +L  M ++G    P  V+Y+T+I+G+  +G+L
Sbjct: 46  RGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL 104

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           +  +S  +EM+ Q I P   TYN +I  L   + + +A ++L  M + G++PD +TYN +
Sbjct: 105 DKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 164

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++G+C  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   +G+
Sbjct: 165 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 224

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P+I  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +Q KVEEA  
Sbjct: 225 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 284

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +  +M+++G+       NP  +TY A+I  LCK+   + A     +M+ +G++P +  Y 
Sbjct: 285 VFSKMRQQGL-------NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYN 337

Query: 302 SLIEGIASVDK 312
           SLI G+ + +K
Sbjct: 338 SLIHGLCTCNK 348



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 171/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ Y +   V    K+ ++EEA  +  +M++ GL P AVTY  +I   C  G 
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ +G+ P    YN LIH L    K   A++++ EM ++GI  ++I +N 
Sbjct: 314 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L  + ++ G
Sbjct: 374 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD V ++ LI+G+C    ++ A  L +EM+   V PD +TYN ++ G  +  +   A+
Sbjct: 434 MKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   + + G +   +S      TYN ++ GLCKN+  D A  + + +    +  +  T+
Sbjct: 494 ELYVGITKSG-RQLELS------TYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTF 546

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+ +  V +  E+ +
Sbjct: 547 NIMIDALLKVGRNDEAKD 564



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 160/309 (51%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + ++G  KEG L++      +M +  + P  VTYN++I   C    ++ A   
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 145

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              MVK G+MP   TYN ++H      +  EA   LK+M   G+ PD +TYN L++  C+
Sbjct: 146 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 205

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  + D M  +G++P + TY +L+   + +  ++E   L +  +  G+ P+  +
Sbjct: 206 NGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 265

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F+ L+  +     +E A  +  +M +  ++P+ VTY  ++   C+ G+VE+A    +QM 
Sbjct: 266 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 325

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G+ P +I        YN+LI GLC   + + AEEL+ EM+ +GI  +   + S+I+  
Sbjct: 326 DEGLSPGNI-------VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH 378

Query: 308 ASVDKAAES 316
               +  ES
Sbjct: 379 CKEGRVIES 387



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 159/355 (44%), Gaps = 53/355 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ +G+ P++ TYG+ +  +CK GR+E+A    EQM + GL P  + YN+LI        
Sbjct: 289 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 348

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      D +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 349 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 408

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ PD +TY+ LINGYC+    K A  L  EM   G
Sbjct: 409 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSG 468

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 469 VSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDAL 528

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + + +  M +  +  T+N ++    + G+ +EA+ L       G+ P++ ++    +  
Sbjct: 529 RMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR--LMAE 586

Query: 266 NALIQGL---------------CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           N + QGL               C    G L   ++RE++ +G      TY S+I+
Sbjct: 587 NIIGQGLLEELDQLFLSMEDNGCTVDSGML-NFIVRELLQRGEITRAGTYLSMID 640



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 115/245 (46%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA+++L  M   G+ P  VTY+TLI+GYC    ++ A
Sbjct: 398 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDA 457

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + + G   +  TYNI+++G
Sbjct: 458 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHG 517

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  +   +    ++    T+  +I  L K  R  EA  LF  F + G++P+
Sbjct: 518 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 577

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  + +     G +E    L   M+      D    N ++    ++G++  A   L 
Sbjct: 578 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 637

Query: 245 QMKRR 249
            +  +
Sbjct: 638 MIDEK 642



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG--IT 294
           E+AR + D++ RRGI        P   +YN L+ GLC       A ELL  M   G    
Sbjct: 34  EDARHVFDELLRRGI--------PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCP 85

Query: 295 PDDNTYFSLIEGI---ASVDKAAESSN 318
           PD  +Y ++I G      +DK   + N
Sbjct: 86  PDVVSYSTVINGFFKEGDLDKTYSTYN 112



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 49/115 (42%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++ T+   +  + K GR +EA  +      NGLVP   TY  + +    +G LE      
Sbjct: 542 EARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 601

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
             M   G    +   N ++ ELL   ++  A   L  + EK    ++ T ++ I+
Sbjct: 602 LSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 656


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 177/358 (49%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QP   TYG+ V GMCK+G    A  +L +M+E + ++P  V Y+ +ID  C  G
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDG 269

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++GI P   TYN +I       +  +A+ +L+EM E+ I PD +TYN
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P  +TY S+I    KQ+R+  A+ +F     K
Sbjct: 330 ALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATK 389

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD+  F  LIDG+C    I+    LL EM R  +  + VTYNTL+HG C  G +  A
Sbjct: 390 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 449

Query: 240 RRLLDQMKRRGIKPDHISFN---------------------------------------P 260
             L  QM   G+ PD ++ N                                       P
Sbjct: 450 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 509

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             LTYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 510 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 165/349 (47%), Gaps = 39/349 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD +TY S + G C  GR  +A ++L++M E  + P  VTYN LI+ +  +G 
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TYN +I     + ++  A+DM   M  KG  PD  T+  
Sbjct: 341 FFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM  +G+    +TY +LI        +  A  L +  ++ G
Sbjct: 401 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  N L+DG C NG ++ A  + K M + K           V PD +TYN L+ G
Sbjct: 461 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 520

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHI----------------------------SFNPT 261
              +GK  EA  L ++M  RGI PD I                            SF+P 
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            +T+N LI G CK    D   EL  EM  +GI  D   Y +LI G   V
Sbjct: 581 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKV 629



 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 164/320 (51%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P   T+ TLIDGYC    
Sbjct: 351 MLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G++    TYN LIH   +   +  A D+ ++M   G+ PD +T N 
Sbjct: 411 IDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 470

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P +LTY  LI  L  + + +EA
Sbjct: 471 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEA 530

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      P+ VT+NTL++G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 590

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  D I        Y  LI G  K    + A ++ +EM+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVADAI-------IYITLIYGFRKVGNINGALDIFQEMI 643

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G  S
Sbjct: 644 SSGVYPDTITIRNMLTGFWS 663



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 166/309 (53%), Gaps = 12/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y++   +   C   +L  A     ++ + GL P  VT+ TL+ G C +  
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  +M +    P   T+  L++ L  E ++VEA  +L  M E G+ P  ITY  
Sbjct: 165 VSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++G C+ G+   A +L    +E+ H  I P ++ Y+++I  L K  R  +A  LF    
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N++I G C++G    A  LL+EM   K+ PD VTYN L++   ++GK  
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFF 342

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TYN++I G CK    D AE++   M +KG +PD 
Sbjct: 343 EAAELYDEMLPRGIIPNTI-------TYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDV 395

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 396 FTFTTLIDG 404



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 18/299 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +T+ + + G C   R+++   +L +M   GLV   VTYNTLI G+C  G+
Sbjct: 386 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
           L  A     +M+  G+ P   T N L+  L    K+ +A +M K M +            
Sbjct: 446 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN 505

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ PD +TYNILI G    G   +A  L++EM H+GI P  +TY+S+I  L KQ+R+ EA
Sbjct: 506 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            Q+F +  +K   P++V FN LI+G+C  G ++    L  EM R  +  D + Y TL++G
Sbjct: 566 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG 625

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
             + G +  A  +  +M   G+ PD I       T   ++ G    +E + A  +L ++
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTI-------TIRNMLTGFWSKEELERAVAMLEDL 677



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + + G C  G L  A  + +QM  +G+ P  VT NTL+DG C+ G 
Sbjct: 421 MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 480

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 481 LKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR 540

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  +   M  K   P ++T+ +LI    K  R+ + 
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG 600

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ D +++  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 601 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 230 RCRQGKVEEARRLLDQMK 247
              + ++E A  +L+ ++
Sbjct: 661 FWSKEELERAVAMLEDLQ 678



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 148/293 (50%), Gaps = 8/293 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ V +  L+         ++  S   +M ++ I     ++N+
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G+ PD +T+  L++G C      +A     +M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++T+T+L+  L ++ R++EA  L +  +  G+ P  + +  ++DG C  G+   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           +LL++M+ +  + P+ V Y+ ++   C+ G+  +A+ L  +M+ +GI PD         T
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD-------LFT 292

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           YN++I G C +     AE+LL+EM+ + I+PD  TY +LI       K  E++
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAA 345



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 8/267 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL-MERKMVEADDMLKEMGEK 109
           L  G+     LE A     +M++   +P+   +  L+  ++ MER  +    + ++M  K
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDL-VISLYQKMERK 108

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            I  D  ++NILI  +C C     A S   ++   G+ P ++T+T+L+  L  ++R+ EA
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEA 168

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
              F         P++V F  L++G C  G I  A +LL  M    + P ++TY T++ G
Sbjct: 169 LDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C++G    A  LL +M+    +  HI   P  + Y+A+I  LCK+     A+ L  EM 
Sbjct: 229 MCKKGDTVSALNLLRKME----EVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            KGI PD  TY S+I G  S  + +++
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDA 309


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TY S +  +CK GR  EA +M + M + GL P   TY TL+ GY  KG 
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++LI     + K+ +A  +  +M ++G+ PD++TY  
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G  + A    ++MI + + P  + Y SLI  L   ++  +A +L    L +G
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D + FN++ID HC  G +  +  L   M R+ V PD +TY+TL+ G C  GK++EA 
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TYN LI G CK    + A  L REM S G++PD  TY
Sbjct: 535 KLLASMVSVGMKPDCV-------TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 588 NIILQGLFQTRRTAAA 603



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 183/346 (52%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P+ ++Y   + G+C E R +EA  +L+ M ++G    P  V+Y T+I+G+  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G+L+ A+    EM+ +GI+P   TY+ +I  L   + M +A ++L  M + G++P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++GYC  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P+I  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +QGKV++
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ 392

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  +  +M+++G+ PD +++                            +P  + YN+LI 
Sbjct: 393 AMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIH 452

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            LC   + D A+EL+ EM+ +GI  D   + S+I+      +  ES
Sbjct: 453 SLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIES 498



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 168/344 (48%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TY S ++ +CK   +++A  +L  M +NG++P   TYN+++ GYC+ G 
Sbjct: 225 MLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  M   M ++G+ P+  TY  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +   L D M+  GI P    ++ LI   +KQ ++ +A  +F     +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +  +I   C +G +E A    ++M   ++ P  + YN+L+H  C   K ++A+
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M  RGI  D I FN                            P  +TY+ LI G 
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C   + D A +LL  MVS G+ PD  TY +LI G   + +  ++
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ Y +   +    K+G++++A  +  +M++ GL P  VTY T+I   C  G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ + + P    YN LIH L +  K  +A +++ EM ++GI  D+I +N 
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L  + ++ G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD V +N LI+G+C    +E A  L +EM+   V PD +TYN ++ G  +  +   A+
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +   G + +         TYN ++ GLCKN   D A  + + +    +  +  T+
Sbjct: 605 ELYVGITESGTQLE-------LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 301 FSLIEGIASVDKAAESSN 318
             +I  +  V +  E+ +
Sbjct: 658 NIMIGALLKVGRNDEAKD 675



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 166/317 (52%), Gaps = 16/317 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P+  TYG  +   C  GRL+     L  + + G    A+ +  L+ G C   + +  M
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNIL 121
               R  M + G +P   +YN+L+  L  E +  EA ++L+ M + G    PD ++Y  +
Sbjct: 147 DIVLR-RMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+ + G+  KA+  + EM+ +GI P ++TY+S+I  L K   M +A ++  + +  G+
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P+   +N+++ G+C++G  + A   LK+M    V PD VTYN+LM   C+ G+  EAR+
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNT 299
           + D M +RG+KP+         TY  L+QG     +G L E   LL  MV  GI P+   
Sbjct: 326 MFDSMTKRGLKPEIT-------TYGTLLQGYA--TKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 YFSLIEGIASVDKAAES 316
           +  LI   A   K  ++
Sbjct: 377 FSILICAYAKQGKVDQA 393



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 35/289 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ +G+ PD+ TYG+ +  +CK GR+E+A R  EQM +  L P  + YN+LI        
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      D +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ PD +TYN LINGYC+    + A  L  EM   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            + + +    +  +  T+N ++    + G+ +EA+ L   +   G+ PD
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 119/250 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D+  + S +   CKEGR+ E+ ++ + M   G+ P  +TY+TLIDGYC  G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV  G+ P   TYN LI+      +M +A  + +EM   G+ PD ITYNI
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G  +      A  L+  +   G Q  + TY  ++  L K N   EA ++F+N     
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   FN +I      G  + A  L   +    + PD  TY+ +      QG +EE  
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 241 RLLDQMKRRG 250
            L   M+  G
Sbjct: 710 DLFLSMEENG 719



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 114/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA+++L  M   G+ P  VTYNTLI+GYC    +E A
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + E G   +  TYNI+++G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  R  EA  LF    A G++PD
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  ++ + +     G +E    L   M+      +    N+++    ++G +  A
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + P+  TY ILI   C  G     F+    +I KG +   + +T L+  L    R 
Sbjct: 83  GADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRT 142

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTY 223
            +A D +       G +P++  +N L+ G C     + A  LL+ M  D     PD V+Y
Sbjct: 143 SDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSY 202

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
            T+++G  ++G +++A     +M  RGI P+ +       TY+++I  LCK Q  D A E
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVV-------TYSSIIAALCKAQAMDKAME 255

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +L  MV  G+ P+  TY S++ G  S  +  E+
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 169/304 (55%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + PD  +Y + + G  + G   EA  +  +++   LVP+ VTYNTLIDG C  GN
Sbjct: 338 MVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGN 397

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A   +D+M+K G+ P   T+ +L+        +  A ++  EM  +G+ PD I Y  
Sbjct: 398 LDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTT 457

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G  + GN  KAF + +EM  +G  P ++TY  LI  L K     +A++L +    +G
Sbjct: 458 RIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEG 517

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V + ++I  H  +G + +A  +  +M +  +HP  VTY  L+H    +G+++ A+
Sbjct: 518 IVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAK 577

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +  D+M+ +G+ P+ I       TYNALI GLCK    D+A  L  EM SKG++P+  TY
Sbjct: 578 KYFDEMQDKGVSPNVI-------TYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTY 630

Query: 301 FSLI 304
             LI
Sbjct: 631 TILI 634



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 166/308 (53%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++  ++TY   + G CK+   EEA+ +  +M   G +PT VTYNT++   C  G 
Sbjct: 268 MSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGR 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  + D MV + +MP   +YN LI+         EA  +  E+  K +VP  +TYN 
Sbjct: 328 VSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNT 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR GN   A  + D+MI  G+ P ++T+T L+    +   +  A +LF+  L++G
Sbjct: 388 LIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRG 447

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +   I G    GN  +AF + +EM      PD +TYN L++G C+ G  ++A 
Sbjct: 448 LKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDAN 507

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M+  GI PDH+++  T + +  LI GL +      AEE+  +M+ KGI P   TY
Sbjct: 508 ELVQKMRLEGIVPDHVTY--TSIIHAHLISGLLRK-----AEEVFSDMLKKGIHPSVVTY 560

Query: 301 FSLIEGIA 308
             LI   A
Sbjct: 561 TVLIHSYA 568



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 174/340 (51%), Gaps = 30/340 (8%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++P   T+ + +   CKEG +  A  +L+ M+  G  P  V+YN L++G   KG  + A 
Sbjct: 203 IRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAK 262

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              ++M   G+  +A TYN LI     +    EA+D+ +EM  +G +P  +TYN ++   
Sbjct: 263 ELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSL 322

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR G    A    D M+++ + P +++Y +LI+  S+     EA  LF    +K ++P +
Sbjct: 323 CRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSV 382

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N LIDG C  GN++ A  +  +M +  + PD VT+  L+ G C+ G +  A+ L D+
Sbjct: 383 VTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDE 442

Query: 246 MKRRGIKPDHIS----------------------------FNPTRLTYNALIQGLCKNQE 277
           M  RG+KPD I+                            F P  +TYN LI GLCK   
Sbjct: 443 MLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGN 502

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG--IASVDKAAE 315
            D A EL+++M  +GI PD  TY S+I    I+ + + AE
Sbjct: 503 FDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAE 542



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 168/318 (52%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  T+   V G C+ G L  A  + ++M   GL P  + Y T I G    GN
Sbjct: 408 MIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGN 467

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF  ++EM  +G  P   TYN+LI+ L       +A++++++M  +GIVPD +TY  
Sbjct: 468 PSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTS 527

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +   G  +KA  +  +M+ KGI P+++TYT LI   + + R+  A + F+    KG
Sbjct: 528 IIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKG 587

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +NALI G C    ++ A++L  EM+   V P++ TY  L++        ++A 
Sbjct: 588 VSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDAL 647

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   M  R IKPD         T++AL++ L K+ +  L   L  E +   I   ++T+
Sbjct: 648 KLYKDMLDREIKPDSC-------THSALMKHLSKDYK--LLAVLRLENLPLAIVEINSTW 698

Query: 301 FSLIEGIASVDKAAESSN 318
            +  EG   ++++  +S+
Sbjct: 699 IA--EGFVKLEESKNNSH 714



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 162/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ PD       +  +  +  + E   +   M +  + PT VT+NT++D  C +G 
Sbjct: 163 MVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGE 222

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M   G  P   +YN+L++ L  + +   A +++++M   G+   + TYN 
Sbjct: 223 VGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNP 282

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++A  L  EM+ +G  PT++TY ++++ L +  R+ +A +  +  + + 
Sbjct: 283 LIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNED 342

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V +N LI G+   GN   A  L  E+    + P  VTYNTL+ G CR G ++ A+
Sbjct: 343 LMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAK 402

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + D M + G+ PD +       T+  L++G C+     +A+EL  EM+S+G+ PD   Y
Sbjct: 403 GMKDDMIKHGLCPDVV-------TFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAY 455

Query: 301 FSLIEG 306
            + I G
Sbjct: 456 TTRIVG 461



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 131/288 (45%), Gaps = 30/288 (10%)

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMG 107
           + LI  +  K  LE       +MV  G++P     N ++ +LL ++ MV E +++   M 
Sbjct: 141 DLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVL-KLLKDKSMVNEVEEVYSVMI 199

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
           +  I P  +T+N +++  C+ G   +A  + D M   G  P  ++Y  L+  LS +    
Sbjct: 200 KCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFD 259

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            A +L E     G+      +N LI G C     E A  L +EM      P  VTYNT+M
Sbjct: 260 RAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIM 319

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------------------------- 259
           +  CR G+V +ARR LD M    + PD +S+N                            
Sbjct: 320 YSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLV 379

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           P+ +TYN LI G C+    D+A+ +  +M+  G+ PD  T+  L+ G 
Sbjct: 380 PSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGF 427



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 105/198 (53%), Gaps = 7/198 (3%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           ++LI  + +    +K   +  +M++ G+ P +     ++ +L  ++ + E ++++   + 
Sbjct: 141 DLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIK 200

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
             + P IV FN ++D  C  G + RA  +L  M      P++V+YN L++G   +G+ + 
Sbjct: 201 CQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDR 260

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A+ L++QM   G+K        +  TYN LI+G CK +  + A +L REM+ +G  P   
Sbjct: 261 AKELIEQMSMLGLK-------VSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVV 313

Query: 299 TYFSLIEGIASVDKAAES 316
           TY +++  +  + + +++
Sbjct: 314 TYNTIMYSLCRLGRVSDA 331



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN---ALIDGHCTNGNIERAFSLLKEMD 212
           LI V +K+  + +   +F   +  G+LPD+   N    L+        +E  +S+   M 
Sbjct: 143 LIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSV---MI 199

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
           + ++ P  VT+NT+M  RC++G+V  A  +LD M+  G  P+ +S       YN L+ GL
Sbjct: 200 KCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVS-------YNVLVNGL 252

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               E D A+EL+ +M   G+    +TY  LI G    +   E+++
Sbjct: 253 SGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEAND 298


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 172/318 (54%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG +P+ +TY   ++ MCKE +LEE  R+L++M E GLVP+  TYN LIDGYC +G 
Sbjct: 100 MRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGM 159

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D M      P   TYN LI     ++ +  A  +L +M E  + P  +TYN 
Sbjct: 160 VEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNS 219

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A+ L + M   G+ P   TY+  I  L K+ R+ EA+ LF +   KG
Sbjct: 220 LIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKG 279

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++ ALIDG+C  G ++ A SLL  M      P+  TYN L+ G C++ KV+EA 
Sbjct: 280 IKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEAL 339

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L++ M ++G+K        T  TY  LI  + K  + D A  +L +MVS G  PD   Y
Sbjct: 340 LLMESMIQKGLK-------CTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIY 392

Query: 301 FSLIEGIASVDKAAESSN 318
            + I    +     E+ +
Sbjct: 393 TAFIHAFCTRGNIKEAED 410



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 165/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G + +  +Y + + G+C+ GR++E   + ++M+E+   PT  TY  ++      G 
Sbjct: 30  MPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGR 89

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM ++G  P   TY ++I+ +  E K+ E   +L EM EKG+VP   TYN 
Sbjct: 90  RMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNA 149

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  + A  + D M      P   TY  LI    ++  +  A  L    L   
Sbjct: 150 LIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESR 209

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +N+LI G C  G ++ A+ LL  M+   V PD+ TY+  +   C++G++EEA 
Sbjct: 210 LTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEAN 269

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L + +K +GIK + +        Y ALI G CK  + D A  LL  M+++   P+ +TY
Sbjct: 270 VLFNSLKEKGIKANEV-------IYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTY 322

Query: 301 FSLIEGIASVDKAAES 316
            +LI+G+    K  E+
Sbjct: 323 NALIDGLCKERKVQEA 338



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 153/305 (50%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S    P+  TY   + G C++  +  A  +L +M E+ L P+ VTYN+LI G C  G 
Sbjct: 170 MHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGY 229

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+   + M + G++P   TY++ I  L  + ++ EA+ +   + EKGI  + + Y  
Sbjct: 230 LDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTA 289

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    A SL D M+ +   P   TY +LI  L K+ ++ EA  L E+ + KG
Sbjct: 290 LIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKG 349

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +  +  LI      G+ + A  +L +M      PD   Y   +H  C +G ++EA 
Sbjct: 350 LKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAE 409

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++  M  RG+ PD +++      Y  L  GL      + A ++L+ M   G  P  +TY
Sbjct: 410 DMMSMMFERGVMPDALTYTLVIDAYGGL--GLL-----NPAFDVLKRMFDTGCDPSHHTY 462

Query: 301 FSLIE 305
             LI+
Sbjct: 463 SCLIK 467



 Score =  146 bits (369), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 154/364 (42%), Gaps = 57/364 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +    P+S TY + + G+CKE +++EA  ++E M + GL  T  TY  LI     +G+
Sbjct: 310 MLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGD 369

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D+MV  G  P    Y   IH       + EA+DM+  M E+G++PD++TY +
Sbjct: 370 FDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTL 429

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN---------------- 164
           +I+ Y   G    AF +   M   G  P+  TY+ LI  L K+                 
Sbjct: 430 VIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPN 489

Query: 165 ----------RMIE---ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
                     +M++   A +LFE  L  G  P+I  +  LI G C  G +  A  L   M
Sbjct: 490 VFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHM 549

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD----------------- 254
           +   V P E  YN+L++  C  G   +A RL+  M   G  P                  
Sbjct: 550 NERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSK 609

Query: 255 -----------HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                         +N   + +  LI GL KN   D   ELL  M ++G      TY  L
Sbjct: 610 EKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRML 669

Query: 304 IEGI 307
           IEG+
Sbjct: 670 IEGL 673



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 16/197 (8%)

Query: 121 LINGYCRCGN---------AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
           ++NGYC+ GN            AFS+ + M  KG +   ++YT+LI  L +  R+ E   
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           +F+        P +  +  ++     +G    A +L  EM      P+  TY  +++  C
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           ++ K+EE RR+LD+M  +G+        P+  TYNALI G CK    + A+E+L  M S 
Sbjct: 121 KETKLEEGRRILDEMVEKGLV-------PSVPTYNALIDGYCKEGMVEAAQEILDLMHSN 173

Query: 292 GITPDDNTYFSLIEGIA 308
              P++ TY  LI G  
Sbjct: 174 SCNPNERTYNELICGFC 190


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 167/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G+ P   +Y S + G+C   R +EAS ML +M    ++P  VT++ LID +C +GN
Sbjct: 257 MKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGN 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P   TYN L+H   ++ ++VEA  +   M  +G  PD  +Y+I
Sbjct: 317 VLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSI 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC      +A  L +EMIH+G+ P  ++YT+LI    +  ++ EA +LF++    G
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+  ++ L++G C  G + +AF L + M    + P+ V Y  L+   C+ G +  AR
Sbjct: 437 YLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHAR 496

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  ++   G++PD          Y  +I GLCK    D A E  R+M   G  P++ +Y
Sbjct: 497 KLFSELFVHGLQPD-------VQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSY 549

Query: 301 FSLIEGI 307
             +I G 
Sbjct: 550 NVIIRGF 556



 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P++ T    ++  C    ++    +L ++ + GL PT +T+ TLI+G C  G 
Sbjct: 117 MELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGE 176

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+MV +G  P   TY  +I+ L    +   A  ++K+MGE G  PD +TY+ 
Sbjct: 177 FAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYST 236

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+     +A  +   M  KGI PT+++YTSLI  L   +R  EA  +     +  
Sbjct: 237 LIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLN 296

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PDIV F+ LID  C  GN+  A  +LK M  M V P+ +TYN+LMHG   Q +V EAR
Sbjct: 297 IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEAR 356

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D M  RG KPD  S       Y+ LI G C  +  D A++L  EM+ +G+TP+  +Y
Sbjct: 357 KLFDVMITRGCKPDVFS-------YSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSY 409

Query: 301 FSLIEGIASVDKAAES 316
            +LI     + K  E+
Sbjct: 410 TTLIHAFCQLGKLREA 425



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 176/347 (50%), Gaps = 31/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG QPD YTY + ++G+CK G    A+ ++++M E G  P  VTY+TLID  C    
Sbjct: 187 MVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRL 246

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +GI PT  +Y  LI  L    +  EA  ML EM    I+PD +T+++
Sbjct: 247 VNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSL 306

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ GN  +A  +   M   G++P ++TY SL+   S Q  ++EA +LF+  + +G
Sbjct: 307 LIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG 366

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  ++ LI+G+C    I+ A  L  EM    + P+ V+Y TL+H  C+ GK+ EAR
Sbjct: 367 CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAR 426

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L   M   G  PD  +++                            P  + Y  LI  +
Sbjct: 427 ELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSM 486

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAES 316
           CK+   + A +L  E+   G+ PD   Y ++I G+     +D+A E+
Sbjct: 487 CKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEA 533



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 131/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+P+  TY S + G   +  + EA ++ + M   G  P   +Y+ LI+GYC    
Sbjct: 327 MTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKR 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM+ QG+ P   +Y  LIH      K+ EA ++ K+M   G +PD  TY++
Sbjct: 387 IDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSV 446

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+C+ G   KAF L   M    ++P ++ YT LI  + K   +  A +LF      G
Sbjct: 447 LLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHG 506

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+ ++  +I+G C  G ++ A    ++M+     P+E +YN ++ G  +      A 
Sbjct: 507 LQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAV 566

Query: 241 RLLDQMKRRGIKPD 254
           +L+ +M+ +G   D
Sbjct: 567 QLIGEMRDKGFVAD 580



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 109/222 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG +PD ++Y   ++G C   R++EA ++  +M   GL P  V+Y TLI  +C  G 
Sbjct: 362 MITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGK 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     +M   G +P   TY++L+     +  + +A  + + M    + P+ + Y I
Sbjct: 422 LREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTI 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ GN   A  L  E+   G+QP +  YT++I  L K+  + EA + F      G
Sbjct: 482 LIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDG 541

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
             P+   +N +I G   + +  RA  L+ EM       DE T
Sbjct: 542 CPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGT 583



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 43/259 (16%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML-KEMGEKGIVPDSITY 118
           N++ A +  + M+ +  +P    +N L+  ++  R+  +A   L K+M   G+ P++ T 
Sbjct: 70  NIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTL 129

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NILIN +C   +    FS+  ++I  G+QPT                             
Sbjct: 130 NILINCFCLMQHVDLGFSVLAKVIKLGLQPT----------------------------- 160

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
                 I+ F  LI+G C  G   +A  L  +M      PD  TY T+++G C+ G+   
Sbjct: 161 ------IITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAA 214

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L+ +M   G +PD +       TY+ LI  LCK++  + A ++   M +KGI+P   
Sbjct: 215 AAGLIKKMGEVGCQPDVV-------TYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVV 267

Query: 299 TYFSLIEGIASVDKAAESS 317
           +Y SLI+G+ S  +  E+S
Sbjct: 268 SYTSLIQGLCSFSRWKEAS 286


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 176/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++PD +TYG  +  +CK+G+  EA ++ + M   G+ P    Y  ++ GY  KG 
Sbjct: 300 MSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGA 359

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    SF D MV  GI P    +N++      +  + EA D+  +M ++G+ P+ + Y  
Sbjct: 360 LSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYAT 419

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++MI++G+ P ++ +TSL++ L   ++  +A +LF   + +G
Sbjct: 420 LIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQG 479

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V FN ++   CT G + +A  L+  M+R+   PD ++YN L+ G C  GK +EA 
Sbjct: 480 IHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEAS 539

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD M   G+KP+         TYN L+ G C++   D A  + +EM+S GITP   TY
Sbjct: 540 KLLDIMLSVGLKPNEC-------TYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTY 592

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+    + +E+
Sbjct: 593 NTILHGLFKTRRFSEA 608



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 170/319 (53%), Gaps = 10/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGL---VPTAVTYNTLIDGYCN 57
           M   G  P+  +Y + + G C E R EEA  +L  M +  +    P  V+YNT+I+G+  
Sbjct: 157 MSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFT 216

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++ A++   +M  QGI P   TY ++I  L   + +  A+ + ++M +KG+ P+ +T
Sbjct: 217 EGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVT 276

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI+GY   G  K+   +  EM   G++P   TY  L+  L K+ +  EA +LF++ +
Sbjct: 277 YTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMI 336

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+ ++  ++ G+ T G +    S L  M    + P+   +N +     ++  + 
Sbjct: 337 RKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIG 396

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  + ++M+++G+ P+ ++       Y  LI  LCK    D AE    +M+++G+ P+ 
Sbjct: 397 EAMDIFNKMRQQGLSPNVVN-------YATLIDALCKLGRVDDAELKFNQMINEGVAPNI 449

Query: 298 NTYFSLIEGIASVDKAAES 316
             + SL+ G+ ++DK  ++
Sbjct: 450 VVFTSLVYGLCTIDKWEKA 468



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 144/298 (48%), Gaps = 11/298 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+   + S V G+C   + E+A  +  +M   G+ P  V +NT++   C +G 
Sbjct: 440 MINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGR 499

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M + G  P   +YN LI    +  K  EA  +L  M   G+ P+  TYN 
Sbjct: 500 VMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNT 559

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYCR G    A+S+  EM+  GI P ++TY +++  L K  R  EA +L+ N +  G
Sbjct: 560 LLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSG 619

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I  +N +++G   N  ++ A  + + +    +  D +T+N ++    + G+ E+A 
Sbjct: 620 KQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAM 679

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPD 296
            L   +   G+ PD  ++   RL    LI      +EG L E   +  EM   G  P+
Sbjct: 680 NLFATISANGLVPDVTTY---RLIAENLI------EEGSLEEFDGMFSEMEKSGCAPN 728



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 135/259 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+   + + +  +C EGR+ +A R+++ M+  G  P  ++YN LI G+C  G 
Sbjct: 475 MVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGK 534

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M+  G+ P   TYN L+H    + ++ +A  + +EM   GI P  +TYN 
Sbjct: 535 TDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNT 594

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G  +     +A  L+  MI  G Q ++ TY  ++  LSK N + EA ++F++  +K 
Sbjct: 595 ILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKD 654

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI+ FN +I     +G  E A +L   +    + PD  TY  +      +G +EE  
Sbjct: 655 LQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFD 714

Query: 241 RLLDQMKRRGIKPDHISFN 259
            +  +M++ G  P+ +  N
Sbjct: 715 GMFSEMEKSGCAPNSLMLN 733



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 124/249 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +PD  +Y + + G C  G+ +EAS++L+ M   GL P   TYNTL+ GYC  G 
Sbjct: 510 MERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGR 569

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+S   EM+  GI P   TYN ++H L   R+  EA ++   M   G      TYNI
Sbjct: 570 IDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNI 629

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG  +     +A  +   +  K +Q  ++T+  +I  L K  R  +A  LF    A G
Sbjct: 630 ILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANG 689

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+  +  + +     G++E    +  EM++    P+ +  N L+     +G +  A 
Sbjct: 690 LVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAG 749

Query: 241 RLLDQMKRR 249
             L ++  +
Sbjct: 750 AYLSKIDEK 758



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 12/210 (5%)

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEA 169
           + PD  TY+IL+  +CR G  +  F+    ++  G     ++    L+  L    R+ EA
Sbjct: 90  VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149

Query: 170 -DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH---PDEVTYNT 225
              L       G  P++V +N L+ G C     E A  LL  M   +V    P+ V+YNT
Sbjct: 150 MGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNT 209

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           +++G   +G+V++A  L   M  +GI P+ +       TY  +I GLCK Q  D AE + 
Sbjct: 210 VINGFFTEGQVDKAYNLFLDMTDQGIPPNVV-------TYTIVIDGLCKAQVVDRAEGVF 262

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           ++M+ KG+ P+  TY  LI G  S+ +  E
Sbjct: 263 QQMIDKGVRPNIVTYTCLIHGYLSIGQWKE 292



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G Q   YTY   ++G+ K   ++EA +M + +    L    +T+N +I      G 
Sbjct: 615 MITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGR 674

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A +    +   G++P  +TY L+   L+ E  + E D M  EM + G  P+S+  N 
Sbjct: 675 KEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNF 734

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           L+      G+  +A +   ++  K       T + LI + S++
Sbjct: 735 LVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSRE 777



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDG------HCTNGNIERAFSLLKEMDR---MKVHP 218
           +A +LF+ FL       I+ FN L+          ++   E   S    M R    KV P
Sbjct: 33  DALKLFDEFLHHARPASIIAFNQLLAAVSSASRRGSSSTSELVVSCFNRMIRDCCSKVAP 92

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE- 277
           D  TY+ L+   CR G++E        + + G +          +  N L++GLC  +  
Sbjct: 93  DVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWR------VNDVVVVNRLLKGLCDAKRV 146

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           G+    LLR M   G TP+  +Y +L++G    ++A E+
Sbjct: 147 GEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEA 185


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/311 (36%), Positives = 172/311 (55%), Gaps = 6/311 (1%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+Y +   ++G+ K G +  A ++  +M E  LVP  VT+N LI G C  GN E A + 
Sbjct: 530 PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASAL 589

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            +EMV + + P   T+  LI  L    ++  A D+L  MG  G+ P+ +TYN L++G C+
Sbjct: 590 FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCK 649

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  ++A    +EM+  G  P  +TY SL++ L + +R  +A QL     + G  PD V 
Sbjct: 650 SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVT 709

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N L+DG   +G  E+A ++L+EM     HPD VTYNTL+   C+ G +EEARRL   M 
Sbjct: 710 YNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMS 769

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG--ITPDDNTYFSLIE 305
            R  +       P  +TY+ LI GLCK    D A EL++EM+ K   + P+  TY S ++
Sbjct: 770 SRVSR----CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLD 825

Query: 306 GIASVDKAAES 316
           G+      AE+
Sbjct: 826 GLCKQSMMAEA 836



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 16/324 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PDS TYGS V  +C+  R ++A +++ ++K  G  P  VTYN L+DG    G 
Sbjct: 663 MVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQ 722

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSIT 117
            E A +  +EMV +G  P   TYN LI  L     + EA  +  +M  +     VP+ +T
Sbjct: 723 TEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVT 782

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           Y++LING C+ G   +A  L  EM+ K   + P ++TY S +  L KQ+ M EA +L  +
Sbjct: 783 YSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRS 842

Query: 176 FLAKGML---PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
            L  G L   PD V F+ LIDG C  G  + A ++  +M      P+ VTYN LM+G C+
Sbjct: 843 -LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCK 901

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
             K+E A  +++ M  +G+ PD I       TY+ L+   CK    D A ELL  M S+G
Sbjct: 902 TDKMERAHAMIESMVDKGVTPDVI-------TYSVLVDAFCKASHVDEALELLHGMASRG 954

Query: 293 ITPDDNTYFSLIEGIASVDKAAES 316
            TP+  T+ S+I+G+   D++ E+
Sbjct: 955 CTPNVVTFNSIIDGLCKSDQSGEA 978



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 178/343 (51%), Gaps = 39/343 (11%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD+ T+ + + G+CK G+++EA  + + M   G VP  +TYN L++G C    +E A 
Sbjct: 356 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 415

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +  + MV +G+ P   TY++L+       ++ EA ++L  M  +G  P+ +T+N +I+G 
Sbjct: 416 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 475

Query: 126 CRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEAD-------------- 170
           C+   + +AF + D+M  K G+ P  +TY +LI  L +  R  +A+              
Sbjct: 476 CKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAF 535

Query: 171 -----------------QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
                            Q++   L   ++PD V FN LI G C  GN E+A +L +EM  
Sbjct: 536 NCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA 595

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
             + PD +T+  L+ G C+ G+VE AR +LD M   G+ P+ +       TYNAL+ GLC
Sbjct: 596 KNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV-------TYNALVHGLC 648

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           K+   + A + L EMVS G  PD  TY SL+  +    +  ++
Sbjct: 649 KSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 691



 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 192/353 (54%), Gaps = 38/353 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ +QPD  T+G+ + G+CK G++E A  +L+ M   G+ P  VTYN L+ G C  G 
Sbjct: 593 MVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGR 652

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F +EMV  G +P + TY  L++ L    +  +A  ++ E+   G  PD++TYNI
Sbjct: 653 IEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNI 712

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF---L 177
           L++G  + G  ++A ++ +EM+ KG  P ++TY +LI  L K   + EA +L  +    +
Sbjct: 713 LVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRV 772

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR--MKVHPDEVTYNTLMHGRCRQGK 235
           ++  +P++V ++ LI+G C  G I+ A  L++EM R    V P+ +TYN+ + G C+Q  
Sbjct: 773 SRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSM 832

Query: 236 VEEARRLLDQMKRRGIK--PDHISFN----------------------------PTRLTY 265
           + EA  L+  ++   ++  PD ++F+                            P  +TY
Sbjct: 833 MAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTY 892

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
           N L+ GLCK  + + A  ++  MV KG+TPD  TY  L++     + VD+A E
Sbjct: 893 NVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALE 945



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 179/323 (55%), Gaps = 16/323 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P   TY + ++G+CK   L     + E++ E G  P  VTYNTLID  C  G+
Sbjct: 207 MARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGD 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITY 118
           LE A     +M  +  +P   TY++LI+ L    ++ EA ++++EM  K   ++P+ ITY
Sbjct: 267 LEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 326

Query: 119 NILINGYCRCGNAKKAF----SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           N  ++G C+     +A     SL D  +   + P  +T+++LI  L K  ++ EA  +F+
Sbjct: 327 NSFLDGLCKQSMTAEACELMRSLRDGSLR--VSPDTVTFSTLIDGLCKCGQIDEACSVFD 384

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           + +A G +P+++ +NAL++G C    +ERA ++++ M    V PD +TY+ L+   C+  
Sbjct: 385 DMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKAS 444

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GI 293
           +V+EA  LL  M  RG  P+ +       T+N++I GLCK+     A ++  +M  K G+
Sbjct: 445 RVDEALELLHGMASRGCTPNVV-------TFNSIIDGLCKSDRSGEAFQMFDDMALKHGL 497

Query: 294 TPDDNTYFSLIEGIASVDKAAES 316
            PD  TY +LI+G+    +A ++
Sbjct: 498 VPDKITYCTLIDGLFRTGRAGQA 520



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 167/313 (53%), Gaps = 20/313 (6%)

Query: 13  YGSFVSGMCKEGRLEEASRMLE----QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           Y   +  +C+ G   E +R LE    +M  +G+ PT VTYNT+I+G C    L       
Sbjct: 183 YNIVLQSLCRAG---ETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           +E+V++G  P   TYN LI  L     + EA  +  +M  +  VP+ +TY++LING C+ 
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299

Query: 129 GNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML---P 183
           G   +A  L  EM  K   + P ++TY S +  L KQ+   EA +L  + L  G L   P
Sbjct: 300 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS-LRDGSLRVSP 358

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V F+ LIDG C  G I+ A S+  +M      P+ +TYN L++G C+  K+E A  ++
Sbjct: 359 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 418

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + M  +G+ PD I       TY+ L+   CK    D A ELL  M S+G TP+  T+ S+
Sbjct: 419 ESMVDKGVTPDVI-------TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 471

Query: 304 IEGIASVDKAAES 316
           I+G+   D++ E+
Sbjct: 472 IDGLCKSDRSGEA 484



 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 160/302 (52%), Gaps = 18/302 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD  TY + +  +CK G LEEA R+   M     VP  VTY+ LI+G C  G ++ 
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDE 304

Query: 64  AFSFRDEMVKQG--IMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSITYN 119
           A     EM ++   ++P   TYN  +  L  +    EA ++++ +  G   + PD++T++
Sbjct: 305 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 364

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G C+CG   +A S+ D+MI  G  P ++TY +L+  L K ++M  A  + E+ + K
Sbjct: 365 TLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 424

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD++ ++ L+D  C    ++ A  LL  M      P+ VT+N+++ G C+  +  EA
Sbjct: 425 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEA 484

Query: 240 RRLLDQMK-RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            ++ D M  + G+ PD       ++TY  LI GL +      AE LL  M      PD +
Sbjct: 485 FQMFDDMALKHGLVPD-------KITYCTLIDGLFRTGRAGQAEALLDAM------PDPD 531

Query: 299 TY 300
           TY
Sbjct: 532 TY 533



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 177/338 (52%), Gaps = 38/338 (11%)

Query: 3    SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNKGN 60
            SR   P+  TY   ++G+CK GR++EA  ++++M  K   ++P  +TYN+ +DG C +  
Sbjct: 773  SRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSM 832

Query: 61   L----EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
            +    E+  S RD  ++  + P   T++ LI  L    +  EA ++  +M   G VP+ +
Sbjct: 833  MAEACELMRSLRDGSLR--VSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVV 890

Query: 117  TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            TYN+L+NG C+    ++A ++ + M+ KG+ P ++TY+ L+    K + + EA +L    
Sbjct: 891  TYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGM 950

Query: 177  LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD-RMKVHPDEVTYNTLMHGRCRQGK 235
             ++G  P++V FN++IDG C +     AF +  +M  +  + PD++TY TL+ G  R G 
Sbjct: 951  ASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGW 1010

Query: 236  VEEARRLLDQMKRRGIKPDHISFN-------------------------PTRLTYNALIQ 270
              +A  LLD M      PD  +FN                         P ++T+N LI 
Sbjct: 1011 AGQAEVLLDAMP----DPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIA 1066

Query: 271  GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G CK    + A  L  EMV+K + PD  T+ +LI+G+ 
Sbjct: 1067 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLC 1104



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 163/308 (52%), Gaps = 21/308 (6%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
            M  +G  PD  TY + +  +CK G LEEA R+   M        VP  VTY+ LI+G C 
Sbjct: 733  MVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCK 792

Query: 58   KGNLEMAFSFRDEMVKQG--IMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVP 113
             G ++ A     EM+++   ++P   TYN  +  L  +  M EA ++++ +  G   + P
Sbjct: 793  VGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSP 852

Query: 114  DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
            D++T++ LI+G C+CG   +A ++ D+MI  G  P ++TY  L+  L K ++M  A  + 
Sbjct: 853  DTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMI 912

Query: 174  ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
            E+ + KG+ PD++ ++ L+D  C   +++ A  LL  M      P+ VT+N+++ G C+ 
Sbjct: 913  ESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 972

Query: 234  GKVEEARRLLDQMK-RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
             +  EA ++ D M  + G+ PD       ++TY  LI GL +      AE LL  M    
Sbjct: 973  DQSGEAFQMFDDMTLKHGLAPD-------KITYCTLIDGLFRTGWAGQAEVLLDAM---- 1021

Query: 293  ITPDDNTY 300
              PD +TY
Sbjct: 1022 --PDPDTY 1027



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 147/270 (54%), Gaps = 15/270 (5%)

Query: 6    VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
            V PD+ T+ + + G+CK G+ +EA  + + M   G VP  VTYN L++G C    +E A 
Sbjct: 850  VSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAH 909

Query: 66   SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            +  + MV +G+ P   TY++L+        + EA ++L  M  +G  P+ +T+N +I+G 
Sbjct: 910  AMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969

Query: 126  CRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+   + +AF + D+M  K G+ P  +TY +LI  L +     +A+ L +        PD
Sbjct: 970  CKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD----PD 1025

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
               FN  I+G    G++ RA   L  M  +++ PD+VT+N L+ G C+ G  E+A  L +
Sbjct: 1026 TYAFNCCINGLSKLGDVSRA---LHRMLELELVPDKVTFNILIAGACKAGNFEQASALFE 1082

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            +M  + ++PD        +T+ ALI GLCK
Sbjct: 1083 EMVAKNLQPD-------VMTFGALIDGLCK 1105



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 103/209 (49%), Gaps = 8/209 (3%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +GV PD  TY   V   CK   ++EA  +L  M   G  P  VT+N++IDG C    
Sbjct: 915  MVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQ 974

Query: 61   LEMAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               AF   D+M +K G+ P   TY  LI  L       +A+ +L  M +    PD+  +N
Sbjct: 975  SGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTYAFN 1030

Query: 120  ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
              ING  + G+  +A  LH  M+   + P  +T+  LI    K     +A  LFE  +AK
Sbjct: 1031 CCINGLSKLGDVSRA--LH-RMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 1087

Query: 180  GMLPDIVMFNALIDGHCTNGNIERAFSLL 208
             + PD++ F ALIDG C  G +E  + ++
Sbjct: 1088 NLQPDVMTFGALIDGLCKAGQVEATWDIM 1116



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 42/167 (25%)

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR-------------- 230
           I  FN  ++    +G+  +A  L +     +  P+  TY+TL+                 
Sbjct: 111 IFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFF 170

Query: 231 --------------------CRQGKVEEARRLL-DQMKRRGIKPDHISFNPTRLTYNALI 269
                               CR G+   A  +   +M R G+        PT +TYN +I
Sbjct: 171 RRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVA-------PTIVTYNTII 223

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            GLCK+ E     EL  E+V +G  PD  TY +LI+ +       E+
Sbjct: 224 NGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEA 270


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 180/309 (58%), Gaps = 7/309 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV   +YT    ++G+CK+G++ +A ++LE +   GLVPT V YNTLI+GYC   +L  
Sbjct: 328 KGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRG 387

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF   ++M  + I P   TYN LI+ L     + +A+D++ EM + G+ P   T+N LI+
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 447

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            Y   G  +K F++  +M  KGI+  ++++ S++    K  ++ EA  + ++ + K + P
Sbjct: 448 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 507

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +  ++N++ID +  +G+ E+AF L+++M    V    VTYN L+ G CR  +++EA  L+
Sbjct: 508 NAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             ++ +G++PD +S       YN +I   C   + D A ELL+EM   GI P   TY +L
Sbjct: 568 YTLRNQGLRPDVVS-------YNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 620

Query: 304 IEGIASVDK 312
           +  +AS  +
Sbjct: 621 VSALASAGR 629



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 173/327 (52%), Gaps = 28/327 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+++Y   ++G+ + G+  +A ++ ++M + G+VP  +TYNT+IDG+   G+LE  F  
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 251

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RD+M+  G  P   TYN+L+  L    +M E   ++ EM    + PD  TY+IL +G  R
Sbjct: 252 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G ++   SL  E + KG+     T + L+  L K  ++ +A+Q+ E  +  G++P  V+
Sbjct: 312 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 371

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C   ++  AF + ++M    + PD +TYN L++G C+   V +A  L+ +M+
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           + G+ P   +FN                               +++ ++++  CKN +  
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG 306
            A  +L +M+ K + P+   Y S+I+ 
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDA 518



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 182/342 (53%), Gaps = 31/342 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+  TY   +SG+C+ GR++E   ++++M  + + P   TY+ L DG    G     
Sbjct: 259 GPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTM 318

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   E +K+G+M  A T ++L++ L  + K+ +A+ +L+ +   G+VP ++ YN LING
Sbjct: 319 LSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLING 378

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+  + + AF + ++M  + I+P  +TY +LI  L K   + +A+ L       G+ P 
Sbjct: 379 YCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPS 438

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  FN LID + T G +E+ F++L +M +  +  D +++ +++   C+ GK+ EA  +LD
Sbjct: 439 VETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILD 498

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  + + P+   +N                             + +TYN L++GLC++ 
Sbjct: 499 DMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           + D AEEL+  + ++G+ PD  +Y ++I    +    DKA E
Sbjct: 559 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 600



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 161/298 (54%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+CK   + +A  ++ +M+++G+ P+  T+NTLID Y   G 
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 454

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F+   +M ++GI     ++  ++       K+ EA  +L +M  K + P++  YN 
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G+ ++AF L ++M + G+  +++TY  L+  L + +++ EA++L      +G
Sbjct: 515 IIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 574

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I   C  G+ ++A  LL+EM++  + P   TY+TL+      G+V +  
Sbjct: 575 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDME 634

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            L  QM  + ++       P+   Y  ++    + +       L +EM  KGI  DD 
Sbjct: 635 CLYQQMLHKNVE-------PSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDDT 685



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 143/297 (48%), Gaps = 9/297 (3%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ--GIMPTAS 81
           GR  +       +   G  P    +N ++      G+L++A +    M +      P A 
Sbjct: 136 GRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAF 195

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           +YN++I  L    K  +A  +  EM + G+VP+ ITYN +I+G+ + G+ +  F L D+M
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQM 255

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +H G +P ++TY  L+  L +  RM E   L +   +  M PD   ++ L DG    G  
Sbjct: 256 LHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGES 315

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
               SL  E  +  V     T + L++G C+ GKV +A ++L+ +        H    PT
Sbjct: 316 RTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLV-------HTGLVPT 368

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + YN LI G C+ ++   A  +  +M S+ I PD  TY +LI G+  ++   ++ +
Sbjct: 369 TVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAED 425



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 30/264 (11%)

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +P+ S+ NLL+  LL   +  +       +   G  PD+  +N ++      G+   A +
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 137 LHDEMIHK--GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
           +   M        P   +Y  +I  L +  +  +A ++F+  +  G++P+ + +N +IDG
Sbjct: 179 MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           H   G++E  F L  +M      P+ VTYN L+ G CR G+++E R L+D+M    + PD
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 298

Query: 255 HISFNP-----TR-----------------------LTYNALIQGLCKNQEGDLAEELLR 286
             +++      TR                        T + L+ GLCK+ +   AE++L 
Sbjct: 299 GFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLE 358

Query: 287 EMVSKGITPDDNTYFSLIEGIASV 310
            +V  G+ P    Y +LI G   V
Sbjct: 359 MLVHTGLVPTTVIYNTLINGYCQV 382


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 181/335 (54%), Gaps = 28/335 (8%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RGV P+ +T+  F+ G+CKEG L+ A R+L  +   GL P  VTYNT+I G C K  +  
Sbjct: 324 RGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVE 383

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +MV  G  P   TYN +I     +  +V+A+ +LK+   KG  PD  TY  L+N
Sbjct: 384 AEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVN 443

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+ G+  +A ++  + + KG++P+++ Y +LI  L +Q  ++ A QL      KG  P
Sbjct: 444 GFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKP 503

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I+G C  G +  A  L+ +       PD  TYNTL+ G CRQ K++ A  L+
Sbjct: 504 DIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELV 563

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
           ++M  +G+ PD I++N                            P  +TYN +I+ LC +
Sbjct: 564 NRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNS 623

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           ++ + A +LL EM SKG+TPD  ++ +LI G   V
Sbjct: 624 KKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKV 658



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 7/308 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  T+   V  +CK+G + E+ R+ +++ + G+ P   T+N  I G C +G+L+ A   
Sbjct: 293 PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              + ++G+ P   TYN +I  L  + ++VEA++ L +M   G  P+  TYN +I+GYC+
Sbjct: 353 LGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCK 412

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  +  + + KG +P   TY SL+    +     +A  +F++ L KG+ P I++
Sbjct: 413 KGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIV 472

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI G C  G I  A  L+ EM      PD  TYN +++G C+ G + +A  L+    
Sbjct: 473 YNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI 532

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G  PD         TYN L+ G C+  + D A EL+  M S+G+TPD  TY +L+ G+
Sbjct: 533 TKGCIPD-------IFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGL 585

Query: 308 ASVDKAAE 315
               K+ E
Sbjct: 586 CKTAKSEE 593



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 164/337 (48%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+ +TY S + G CK+G + +A+R+L+     G  P   TY +L++G+C  G+
Sbjct: 391 MVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGD 450

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   + + +G+ P+   YN LI  L  +  ++ A  ++ EM EKG  PD  TYN+
Sbjct: 451 PDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNL 510

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G    A  L  + I KG  P + TY +L+    +Q ++  A +L     ++G
Sbjct: 511 IINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQG 570

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD++ +N L++G C     E    + K M      P+ +TYNT++   C   KV EA 
Sbjct: 571 MTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAV 630

Query: 241 RLLDQMKRRGIKPDHISFNP-----------------------------TRLTYNALIQG 271
            LL +MK +G+ PD +SF                               T  TYN +I  
Sbjct: 631 DLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISA 690

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             +     +A  L  EM   G  PD+ TY  LI+G  
Sbjct: 691 FSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFC 727



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 157/314 (50%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++P    Y + + G+C++G +  A +++ +M E G  P   TYN +I+G C  G L  
Sbjct: 464 KGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSD 523

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     + + +G +P   TYN L+     + K+  A +++  M  +G+ PD ITYN L+N
Sbjct: 524 ANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLN 583

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+   +++   +   M  KG  P ++TY ++I  L    ++ EA  L     +KG+ P
Sbjct: 584 GLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTP 643

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           D+V F  LI G C  G+++ A+ L + M++   V     TYN ++     Q  ++ A RL
Sbjct: 644 DVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRL 703

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +MK+ G  PD+        TY  LI G CK    +   + L E + KG  P   T+  
Sbjct: 704 FSEMKKNGCDPDN-------YTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGR 756

Query: 303 LIEGIASVDKAAES 316
           ++  +    K  E+
Sbjct: 757 VLNCLCVEHKVQEA 770



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 137/279 (49%), Gaps = 13/279 (4%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G  PD +TY + V G C++ +L+ A  ++ +M   G+ P  +TYNTL++G C     E
Sbjct: 533 TKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSE 592

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                   M ++G  P   TYN +I  L   +K+ EA D+L EM  KG+ PD +++  LI
Sbjct: 593 EVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLI 652

Query: 123 NGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            G+C+ G+   A+ L   M  +  +  T  TY  +I   S+Q  M  A +LF      G 
Sbjct: 653 TGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGC 712

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD   +  LIDG C  GN+ + +  L E       P   T+  +++  C + KV+EA  
Sbjct: 713 DPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVG 772

Query: 242 LLDQMKRRGIKPD------------HISFNPTRLTYNAL 268
           ++  M ++ I PD            HI+++     Y+ +
Sbjct: 773 IIHLMVQKDIVPDTVNTIFEADKKGHITYHAYEFLYDGV 811



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           ++G+++EA    E+M      P+  +YN +++     G    A      M  + +     
Sbjct: 167 RKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVY 226

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TY + I       +   A  +L+ M   G   +++ Y  ++ G+   G+  +A  L DEM
Sbjct: 227 TYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEM 286

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +   + P + T+  L+  L K+  ++E+++LF+  L +G+ P++  FN  I G C  G++
Sbjct: 287 LECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSL 346

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           +RA  LL  + R  + PD VTYNT++ G CR+ +V EA   L +M   G       F P 
Sbjct: 347 DRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGG-------FEPN 399

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             TYN++I G CK      A  +L++ V KG  PD+ TY SL+ G  
Sbjct: 400 DFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFC 446



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 7/230 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY + +  +C   ++ EA  +L +MK  GL P  V++ TLI G+C  G+
Sbjct: 601 MTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGD 660

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A+     M KQ  +  T +TYN++I     +  M  A  +  EM + G  PD+ TY 
Sbjct: 661 LDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYR 720

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LI+G+C+ GN  + +    E I KG  P++ T+  ++  L  ++++ EA  +    + K
Sbjct: 721 VLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQK 780

Query: 180 GMLPDIV--MFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTL 226
            ++PD V  +F A   GH T    E  +  +++   + K HP+   +N+L
Sbjct: 781 DIVPDTVNTIFEADKKGHITYHAYEFLYDGVRDKKILKKKHPN---WNSL 827



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 125/303 (41%), Gaps = 44/303 (14%)

Query: 51  LIDGYCNK------GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
           L+D +C K       NL++      +  KQG   T  TY  ++ +L    K  E +++L 
Sbjct: 89  LVDVFCMKYEDVCIRNLQLI-----KKTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLS 143

Query: 105 EMGEKGIVPDSITYNILING---YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           EM  +  + +++   + +     Y R G  ++A    + M      P++ +Y +++ +L 
Sbjct: 144 EM--RSNLDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILV 201

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           +     +A +++     K +  D+  +   I   C  G    A  LL+ M  +    + V
Sbjct: 202 EFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAV 261

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------------------- 259
            Y T++ G    G  + AR L D+M    + PD  +FN                      
Sbjct: 262 AYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKV 321

Query: 260 ------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
                 P   T+N  IQGLCK    D A  LL  +  +G+ PD  TY ++I G+    + 
Sbjct: 322 LKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRV 381

Query: 314 AES 316
            E+
Sbjct: 382 VEA 384


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 180/349 (51%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK     PD+ +Y + +  +CK+G+L EA  +L  MK NGL+P   T+N L+ GYC  G 
Sbjct: 238 MKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGW 297

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D M +  ++P   TYN+LI  L  + K+ EA  +  EM    ++PD +TYN 
Sbjct: 298 LKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNT 357

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING   C ++ K F L D+M  KG++P  +TY  ++    K+ +M  A          G
Sbjct: 358 LINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESG 417

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V FN LI+G+C  G +  AF ++ EM R  +  + VT NT++H  C + K+++A 
Sbjct: 418 FSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAY 477

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LL    +RG   D +S+                             P+ +TYN +I GL
Sbjct: 478 KLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGL 537

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAESSN 318
           C + + D + + L E++  G+ PD+ TY ++I G      V+KA +  N
Sbjct: 538 CHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHN 586



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 172/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+P++ TY   V    KEG+++ A   L +M+E+G  P  VT+NTLI+GYC  G 
Sbjct: 378 MEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGR 437

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF   DEM ++G+   + T N ++H L  ERK+ +A  +L    ++G   D ++Y  
Sbjct: 438 LSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGT 497

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY + G + +A  L DEM  K I P+++TY ++I  L    +  ++       L  G
Sbjct: 498 LIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESG 557

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N +I G+C  G +E+AF    +M +    PD  T N L+ G C +G +++A 
Sbjct: 558 LVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKAL 617

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G   D +       TYN +I GLCK    + A +LL EM  K + PD  TY
Sbjct: 618 KLFNTWISKGKAIDAV-------TYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTY 670

Query: 301 FSLIEGIASVDKAAES 316
            +++  +A   +  E+
Sbjct: 671 NAILSALADAGRMKEA 686



 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 183/351 (52%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V PD +TY   + G+CK+G+++EA R+ ++M+   L+P  VTYNTLI+G  +  +
Sbjct: 308 MAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSS 367

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               F   D+M  +G+ P A TYN+++   + E KM  A + L++M E G  PD +T+N 
Sbjct: 368 SLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNT 427

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT---------------------------- 152
           LINGYC+ G   +AF + DEM  KG++   +T                            
Sbjct: 428 LINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRG 487

Query: 153 -------YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                  Y +LI    K  + +EA +L++    K ++P I+ +N +I G C +G  +++ 
Sbjct: 488 YFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSI 547

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
             L E+    + PDE TYNT++ G CR+G+VE+A +  ++M ++  KPD         T 
Sbjct: 548 DKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPD-------LFTC 600

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N L++GLC     D A +L    +SKG   D  TY ++I G+   D+  E+
Sbjct: 601 NILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEA 651



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 174/368 (47%), Gaps = 51/368 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVT------------- 47
           M+  G  PD  T+ + ++G CK GRL EA RM+++M   GL   +VT             
Sbjct: 413 MEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERK 472

Query: 48  ----------------------YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                 Y TLI GY   G    A    DEM ++ I+P+  TYN 
Sbjct: 473 LDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNT 532

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L    K  ++ D L E+ E G+VPD  TYN +I GYCR G  +KAF  H++M+ K 
Sbjct: 533 MIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKS 592

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P + T   L+  L  +  + +A +LF  +++KG   D V +N +I G C     E AF
Sbjct: 593 FKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAF 652

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH-ISFN----- 259
            LL EM+  K+ PD  TYN ++      G+++EA   + ++  +G   D  IS N     
Sbjct: 653 DLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIE 712

Query: 260 ----------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
                     P  +T++  I  LC   +   A  +++E   KGIT   +TY SL+EG+  
Sbjct: 713 SSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGLIK 772

Query: 310 VDKAAESS 317
             K+   S
Sbjct: 773 RRKSISRS 780



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 171/312 (54%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+ ++ T+   + G C E +L EA  ++ +MK+    P  V+YNT++D  C KG L  A
Sbjct: 207 GVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEA 266

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M   G++P  +T+N+L+        + EA  ++  M +  ++PD  TYN+LI G
Sbjct: 267 RDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGG 326

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +AF L DEM +  + P ++TY +LI      +  ++  +L +    KG+ P+
Sbjct: 327 LCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPN 386

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N ++  +   G ++ A + L++M+     PD VT+NTL++G C+ G++ EA R++D
Sbjct: 387 AVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMD 446

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R+G+K + +       T N ++  LC  ++ D A +LL     +G   D+ +Y +LI
Sbjct: 447 EMSRKGLKMNSV-------TLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLI 499

Query: 305 EGIASVDKAAES 316
            G     K+ E+
Sbjct: 500 MGYFKDGKSVEA 511



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 160/295 (54%), Gaps = 10/295 (3%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDG---YCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           R   A+++  +MK   L P  +T NTLI+    Y +K ++ ++ +   +++K G+    +
Sbjct: 154 RPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTN 213

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           T+N+LI+   +E K+ EA  ++ +M +    PD+++YN +++  C+ G   +A  L  +M
Sbjct: 214 TFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDM 273

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
            + G+ P   T+  L+    K   + EA Q+ +      +LPD+  +N LI G C +G I
Sbjct: 274 KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKI 333

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + AF L  EM+ +K+ PD VTYNTL++G        +   L+D+M+ +G+KP+ +     
Sbjct: 334 DEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAV----- 388

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             TYN +++   K  + D A   LR+M   G +PD  T+ +LI G     + +E+
Sbjct: 389 --TYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEA 441



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 10/157 (6%)

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDG---HCTNGNIERAFSLLKEMDRMKVHPDE 220
           NR   A Q+F       + P+++  N LI+    + +  ++  + ++  ++ ++ V  + 
Sbjct: 153 NRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNT 212

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            T+N L++G C + K+ EA  L+ +MK     PD++S       YN ++  LCK  + + 
Sbjct: 213 NTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVS-------YNTILDVLCKKGKLNE 265

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           A +LL +M + G+ P+ NT+  L+ G   +    E++
Sbjct: 266 ARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAA 302


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 171/342 (50%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ PD  TY S ++G CK G L+EA  +   ++  GL PT +TYN  IDGYC  G+
Sbjct: 336 MRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGD 395

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD------ 114
           LE A   ++EM +QG +P   TY +L+   L    +  A +   EM  KG+ PD      
Sbjct: 396 LEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNT 455

Query: 115 -----------------------------SITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                        ++TYNILI+G C+ GN K A  L  +M+  G
Sbjct: 456 RICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNG 515

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +QP  +TYT LI    ++  + EA ++F N ++ G+LP  V F  +I  +C  GN+  A+
Sbjct: 516 LQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAY 575

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
              ++M    V P+E+TYN L+H  CR G+ + A     +M  RG+  +       + TY
Sbjct: 576 GWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVAN-------KYTY 628

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             LI G CK    + A     EM   GI PD  T+ +L++G 
Sbjct: 629 TLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGF 670



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 163/338 (48%), Gaps = 28/338 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P   TY + + G+ + G +E A     +M+  GL+P  +TYN+L++GYC  GN
Sbjct: 301 MENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGN 360

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     ++ + G+ PT  TYN+ I        + EA  + +EMGE+G +P+  TY I
Sbjct: 361 LKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTI 420

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G     +   A    DEM+ KG+QP    Y + I        +  A +L E  + +G
Sbjct: 421 LMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEG 480

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V +N LI G C  GN++ A  L  +M    + PD +TY  L+H  C +G + EAR
Sbjct: 481 ISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREAR 540

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           ++ + M   G+ P  ++F                             P  +TYN LI  L
Sbjct: 541 KIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 600

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           C+     LA     EM+ +G+  +  TY  LI+G   V
Sbjct: 601 CRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKV 638



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 154/305 (50%), Gaps = 8/305 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +  G  P+  TY   ++G+ ++G LEEA+ ++E M+ +    ++ TYN LI G   +G +
Sbjct: 233 RGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKA-SSFTYNPLITGLLARGCV 291

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           +  +  + EM  +GIMPT  TYN +IH LL    +  A     EM   G++PD ITYN L
Sbjct: 292 KKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSL 351

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +NGYC+ GN K+A  L  ++   G+ PT+LTY   I    +   + EA  L E    +G 
Sbjct: 352 LNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGC 411

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           LP++  +  L+ G     ++  A     EM    + PD   YNT +      G +  A  
Sbjct: 412 LPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALE 471

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L + +   GI  D +       TYN LI GLCK      A+EL  +MVS G+ PD  TY 
Sbjct: 472 LREVLMLEGISSDTV-------TYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYT 524

Query: 302 SLIEG 306
            LI  
Sbjct: 525 CLIHA 529



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 160/303 (52%), Gaps = 12/303 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV PD       +  +    R ++   + E+M + G+ P+ VTYNTL+D +  +G 
Sbjct: 160 MASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGR 219

Query: 61  LEMAFSFRDEMVKQ--GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
            +       EM  +  G +P   TYN++I  L  +  + EA ++++ M        S TY
Sbjct: 220 KDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGM-RLSKKASSFTY 278

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-FENFL 177
           N LI G    G  KK + L  EM ++GI PT++TY ++I  L  Q+ ++EA Q+ F    
Sbjct: 279 NPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGL-LQSGLVEAAQVKFAEMR 337

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           A G+LPD++ +N+L++G+C  GN++ A  L  ++ R  + P  +TYN  + G CR G +E
Sbjct: 338 AMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLE 397

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EAR L ++M  +G  P+         TY  L++G        +A E   EM+SKG+ PD 
Sbjct: 398 EARILKEEMGEQGCLPN-------VCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDC 450

Query: 298 NTY 300
             Y
Sbjct: 451 FAY 453



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 31/213 (14%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
             S   EM   G+ P +     ++  L    R  +   + E  L  G+ P IV +N L+D
Sbjct: 153 CLSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLD 212

Query: 194 GHCTNGNIERAFSLLKEMDR--MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
                G  ++   LLKEM+       P++VTYN ++ G  R+G +EEA  L++ M R   
Sbjct: 213 SFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGM-RLSK 271

Query: 252 KPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEE 283
           K    ++N                            PT +TYNA+I GL ++   + A+ 
Sbjct: 272 KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQV 331

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              EM + G+ PD  TY SL+ G        E+
Sbjct: 332 KFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEA 364


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 180/310 (58%), Gaps = 7/310 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV   +YT    ++G+CK+G++ +A ++LE +   GLVPT V YNTLI+GYC   +L  
Sbjct: 150 KGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRG 209

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF   ++M  + I P   TYN LI+ L     + +A+D++ EM + G+ P   T+N LI+
Sbjct: 210 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 269

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            Y   G  +K F++  +M  KGI+  ++++ S++    K  ++ EA  + ++ + K + P
Sbjct: 270 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 329

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +  ++N++ID +  +G+ E+AF L+++M    V    VTYN L+ G CR  +++EA  L+
Sbjct: 330 NAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 389

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             ++ +G++PD +S       YN +I   C   + D A ELL+EM   GI P   TY +L
Sbjct: 390 YTLRNQGLRPDVVS-------YNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 442

Query: 304 IEGIASVDKA 313
           +  +AS  + 
Sbjct: 443 VSALASAGRV 452



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 173/327 (52%), Gaps = 28/327 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+++Y   ++G+ + G+  +A ++ ++M + G+VP  +TYNT+IDG+   G+LE  F  
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RD+M+  G  P   TYN+L+  L    +M E   ++ EM    + PD  TY+IL +G  R
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G ++   SL  E + KG+     T + L+  L K  ++ +A+Q+ E  +  G++P  V+
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C   ++  AF + ++M    + PD +TYN L++G C+   V +A  L+ +M+
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           + G+ P   +FN                               +++ ++++  CKN +  
Sbjct: 254 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 313

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG 306
            A  +L +M+ K + P+   Y S+I+ 
Sbjct: 314 EAVAILDDMIYKDVAPNAQVYNSIIDA 340



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 182/342 (53%), Gaps = 31/342 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+  TY   +SG+C+ GR++E   ++++M  + + P   TY+ L DG    G     
Sbjct: 81  GPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTM 140

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   E +K+G+M  A T ++L++ L  + K+ +A+ +L+ +   G+VP ++ YN LING
Sbjct: 141 LSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLING 200

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+  + + AF + ++M  + I+P  +TY +LI  L K   + +A+ L       G+ P 
Sbjct: 201 YCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPS 260

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  FN LID + T G +E+ F++L +M +  +  D +++ +++   C+ GK+ EA  +LD
Sbjct: 261 VETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILD 320

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  + + P+   +N                             + +TYN L++GLC++ 
Sbjct: 321 DMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSS 380

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           + D AEEL+  + ++G+ PD  +Y ++I    +    DKA E
Sbjct: 381 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 422



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 161/298 (54%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+CK   + +A  ++ +M+++G+ P+  T+NTLID Y   G 
Sbjct: 217 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 276

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F+   +M ++GI     ++  ++       K+ EA  +L +M  K + P++  YN 
Sbjct: 277 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 336

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G+ ++AF L ++M + G+  +++TY  L+  L + +++ EA++L      +G
Sbjct: 337 IIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 396

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I   C  G+ ++A  LL+EM++  + P   TY+TL+      G+V +  
Sbjct: 397 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDME 456

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            L  QM  + ++       P+   Y  ++    + +       L +EM  KGI  DD 
Sbjct: 457 CLYQQMLHKNVE-------PSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDDT 507



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 7/241 (2%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P A +YN++I  L    K  +A  +  EM + G+VP+ ITYN +I+G+ + G+ +  F L
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
            D+M+H G +P ++TY  L+  L +  RM E   L +   +  M PD   ++ L DG   
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G      SL  E  +  V     T + L++G C+ GKV +A ++L+ +        H  
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLV-------HTG 186

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
             PT + YN LI G C+ ++   A  +  +M S+ I PD  TY +LI G+  ++   ++ 
Sbjct: 187 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 246

Query: 318 N 318
           +
Sbjct: 247 D 247


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 168/326 (51%), Gaps = 18/326 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P+ +TY   ++G C  GR  EA R+L +M E  + P  VT++ LI+    +G 
Sbjct: 274 MQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGK 333

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EM+ +GI+P   TYN +I     + ++  A+ M   M  KG  PD IT++I
Sbjct: 334 FFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSI 393

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM  +G+    +TYT+LI    +   +  A  L +  ++ G
Sbjct: 394 LIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSG 453

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + P++V  N L+DG C NG ++ A  + K M + K           V PD  TYN L+ G
Sbjct: 454 VCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICG 513

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L ++M  RG+ PD I       TYN++I GLCK    D A ++   M 
Sbjct: 514 LINEGKFSEAEELYEEMPHRGLVPDTI-------TYNSVIDGLCKQSRLDEATQMFDSMG 566

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAE 315
           SKG +PD  T+ +LI G   V +  +
Sbjct: 567 SKGFSPDVVTFTTLINGYCKVGRVGD 592



 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 179/357 (50%), Gaps = 40/357 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M   G+QP+  TYG+ V GMCK G    A  +L +M+E   + P  V Y+ +IDG    G
Sbjct: 203 MVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDG 262

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++GI P   TYN +I+      +  EA  +L+EM E+ + PD +T++
Sbjct: 263 RQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFS 322

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LIN   + G   +A  L++EM+ +GI P  +TY S+I   SKQNR+  A+++F     K
Sbjct: 323 VLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATK 382

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD++ F+ LIDG+C    ++    LL EM R  +  + +TY TL+HG C+ G +  A
Sbjct: 383 GCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAA 442

Query: 240 RRLLDQMKRRGIKPDHISFN---------------------------------------P 260
             LL +M   G+ P+ ++ N                                       P
Sbjct: 443 LDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEP 502

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
              TYN LI GL    +   AEEL  EM  +G+ PD  TY S+I+G+    +  E++
Sbjct: 503 DVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEAT 559



 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 176/311 (56%), Gaps = 8/311 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+   + + ++G+C+EGR+ EA  +L++M E+GL P  +TY T++DG C  G+   A +
Sbjct: 174 KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 233

Query: 67  FRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +M +   I P    Y+ +I  L  + +  +A ++  EM EKGI P+  TYN +ING+
Sbjct: 234 LLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGF 293

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   +A  L  EM  + + P ++T++ LI  L K+ +  EA++L+   L +G++P+ 
Sbjct: 294 CSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNT 353

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N++IDG      ++ A  +   M      PD +T++ L+ G C   +V++  +LL +
Sbjct: 354 ITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHE 413

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M RRG+  + I       TY  LI G C+    + A +LL+EM+S G+ P+  T  +L++
Sbjct: 414 MSRRGLVANTI-------TYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLD 466

Query: 306 GIASVDKAAES 316
           G+ +  K  ++
Sbjct: 467 GLCNNGKLKDA 477



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 162/320 (50%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G  K+ RL+ A RM   M   G  P  +T++ LIDGYC    
Sbjct: 344 MLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKR 403

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G++    TY  LIH       +  A D+L+EM   G+ P+ +T N 
Sbjct: 404 VDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNT 463

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M               ++P + TY  LI  L  + +  EA
Sbjct: 464 LLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEA 523

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + +N++IDG C    ++ A  +   M      PD VT+ TL++G
Sbjct: 524 EELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLING 583

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V +   +  +M RRGI  + I       TY  LI G C+    + A ++ +EM+
Sbjct: 584 YCKVGRVGDGLEVFCEMGRRGIVANAI-------TYRTLIHGFCQVGNINGALDIFQEMI 636

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G+ S
Sbjct: 637 SSGVYPDTITIRNMLTGLWS 656



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 163/314 (51%), Gaps = 12/314 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R +  + Y++   +   C   +L  A     ++ + G  P+ VT++TL+ G C +  
Sbjct: 102 MEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDR 161

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  ++ K    P    +  L++ L  E ++VEA  +L  M E G+ P+ ITY  
Sbjct: 162 VSEALHFFHQICK----PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 217

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +++G C+ G+   A +L  +M     I+P ++ Y+++I  L K  R  +A  LF     K
Sbjct: 218 IVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEK 277

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P++  +N +I+G C++G    A  LL+EM   K+ PD VT++ L++   ++GK  EA
Sbjct: 278 GISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEA 337

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L ++M  RGI P+ I       TYN++I G  K    D AE +   M +KG +PD  T
Sbjct: 338 EELYNEMLPRGIIPNTI-------TYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVIT 390

Query: 300 YFSLIEGIASVDKA 313
           +  LI+G     + 
Sbjct: 391 FSILIDGYCGAKRV 404



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 11/254 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + + G C+ G L  A  +L++M  +G+ P  VT NTL+DG CN G 
Sbjct: 414 MSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGK 473

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K             + P   TYN+LI  L+ E K  EA+++ +EM  +
Sbjct: 474 LKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHR 533

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+VPD+ITYN +I+G C+     +A  + D M  KG  P ++T+T+LI    K  R+ + 
Sbjct: 534 GLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDG 593

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            ++F     +G++ + + +  LI G C  GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 594 LEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTG 653

Query: 230 RCRQGKVEEARRLL 243
              + +++ A + L
Sbjct: 654 LWSKEELKRAVQCL 667



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 143/292 (48%), Gaps = 12/292 (4%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           L++A  +   M  +  +P  + +  L+         ++  S   +M  + I     ++ +
Sbjct: 57  LDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTI 116

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G  P  +T++ L++G C      +A  LH    H+ 
Sbjct: 117 LIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEA--LH--FFHQI 172

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++ +T+L+  L ++ R++EA  L +  +  G+ P+ + +  ++DG C  G+   A 
Sbjct: 173 CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 232

Query: 206 SLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           +LL++M+ + ++ P+ V Y+ ++ G  + G+  +A+ L  +M+ +GI P+         T
Sbjct: 233 NLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPN-------LFT 285

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN +I G C +     A+ LLREM  + ++PD  T+  LI  +    K  E+
Sbjct: 286 YNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEA 337



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL-MERKMVEADDMLKEMGEK 109
           L  G+     L+ A      MV+   +P    +  L+  ++ MER  V    + ++M  +
Sbjct: 47  LQSGFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDV-VISLHRKMEMR 105

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            I  +  ++ ILI  +C C     A S   ++   G  P+++T+++L+  L  ++R+ EA
Sbjct: 106 RIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEA 165

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
              F         P+++ F  L++G C  G +  A +LL  M    + P+++TY T++ G
Sbjct: 166 LHFFHQICK----PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 221

Query: 230 RCRQGKVEEARRLLDQMKRRG-IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
            C+ G    A  LL +M+    IKP+ +        Y+A+I GL K+     A+ L  EM
Sbjct: 222 MCKMGDTVSALNLLRKMEEVSRIKPNVV-------IYSAIIDGLWKDGRQTDAQNLFSEM 274

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAES 316
             KGI+P+  TY  +I G  S  + +E+
Sbjct: 275 QEKGISPNLFTYNCMINGFCSSGRWSEA 302



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A  L   M+     P ++ +  L+ V+ +  R      L      + +  +I  F  LI 
Sbjct: 60  AIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIK 119

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C+   +  A S   ++ ++  HP  VT++TL+HG C + +V EA     Q+     KP
Sbjct: 120 CFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKP 175

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           + I+F         L+ GLC+      A  LL  MV  G+ P+  TY ++++G+  +   
Sbjct: 176 NVIAFT-------TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 228

Query: 314 AESSN 318
             + N
Sbjct: 229 VSALN 233


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/321 (36%), Positives = 175/321 (54%), Gaps = 10/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSRG+ P+  TY   V G CK G L+EA+ ++E M +N L+P   TYN LI+G CN+G 
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF  RDEM    ++P   +YN LI+  L   K+ EA  +L+EM EKG+ P+++T+NI
Sbjct: 329 IEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNI 388

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ G    A +   +M   G  P  +TY +LI    K   M EA +  +    K 
Sbjct: 389 MVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKN 448

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  D V  N ++   C    +E A+ LL    +     DEV+Y TL+ G  + G V+ A 
Sbjct: 449 MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRAL 508

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+MK + I P  +       TYN +I GLC+  + + A   L E++  G+ PD+ TY
Sbjct: 509 KLWDEMKEKEIIPSTV-------TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTY 561

Query: 301 FSLIEGI---ASVDKAAESSN 318
            +++ G      V+KA +  N
Sbjct: 562 NTILHGYCREGDVEKAFQFHN 582



 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P++ T+   V   CKEG++++AS  + +M+E+G  P  VTYNTLI+GYC  GN
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   DEM ++ +   + T N ++  L  E+K+ EA  +L    ++G   D ++Y  
Sbjct: 434 MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGT 493

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY + GN  +A  L DEM  K I P+ +TY  +I  L +  +  +A       L  G
Sbjct: 494 LIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESG 553

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD   +N ++ G+C  G++E+AF    +M      PD  T N L+ G C +G +E+A 
Sbjct: 554 LLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKAL 613

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G   D +       TYN LI  LCK    D A  LL EM  K + PD  TY
Sbjct: 614 KLFNTWVSKGKAIDTV-------TYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTY 666

Query: 301 FSLIEGIASVDKAAES 316
            ++I  +    +  E+
Sbjct: 667 NAIITALTDSGRIREA 682



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 173/329 (52%), Gaps = 16/329 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + ++ DS T  + +  +C+E +LEEA ++L   ++ G     V+Y TLI GY   GN
Sbjct: 444 MGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGN 503

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    DEM ++ I+P+  TYN +I  L    K  +A   L E+ E G++PD  TYN 
Sbjct: 504 VDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNT 563

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYCR G+ +KAF  H++M+    +P + T   L+  L  +  + +A +LF  +++KG
Sbjct: 564 ILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKG 623

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D V +N LI   C  G ++ AF+LL EM+  ++ PD  TYN ++      G++ EA 
Sbjct: 624 KAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAE 683

Query: 241 RLLDQMKRRGIKPDHI----------------SFNPTRLTYNALIQGLCKNQEGDLAEEL 284
             + +M  +G  PD +                  + + + Y+  I+ LC   +   A  +
Sbjct: 684 EFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRI 743

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKA 313
             E   KGIT D +TY +L++G+    K+
Sbjct: 744 FGESKQKGITVDKSTYINLMDGLIKRRKS 772



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 164/316 (51%), Gaps = 10/316 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG---YCNKGN 60
           R   P      + +    + G+   A ++ ++MK   L P  +T NTL++    Y +  +
Sbjct: 129 RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHS 188

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  +    ++ +K GI+P  +T+N++I+   +E K  +A + L  MG+    PD++TYN 
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C+ G    A  L  +M  +G+ P   TY  L++   K   + EA  + E      
Sbjct: 249 ILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+  +N LI+G C  G IE AF L  EM+ +K+ PD V+YNTL++G     K+ EA 
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAF 368

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL++M  +G+KP+ +       T+N +++  CK  + D A   + +M   G +PD  TY
Sbjct: 369 KLLEEMSEKGVKPNAV-------THNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTY 421

Query: 301 FSLIEGIASVDKAAES 316
            +LI G        E+
Sbjct: 422 NTLINGYCKAGNMGEA 437



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---ERKMVEA 99
           P+    +T I  Y   G    AF    +M +  + P   T N L++ L+       +  +
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
            +   +  + GIVP+  T+NI+I GYC     K A    + M      P  +TY +++  
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDT 252

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K+ R+ +A  L  +  ++G+LP+   +N L+ G+C  G ++ A ++++ M +  + PD
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             TYN L++G C +G++EEA +L D+M+   + PD +S       YN LI G  +  +  
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVS-------YNTLINGCLEWSKIS 365

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
            A +LL EM  KG+ P+  T+  +++      K  ++SN+
Sbjct: 366 EAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 23/193 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M     +PD +T    + G+C EG LE+A ++       G     VTYNTLI   C +G 
Sbjct: 584 MVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGR 643

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI---- 116
           L+ AF+   EM ++ + P   TYN +I  L    ++ EA++ + +M EKG +PD +    
Sbjct: 644 LDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLD 703

Query: 117 -------------------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
                               Y+  I   C  G  K A  +  E   KGI     TY +L+
Sbjct: 704 KNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLM 763

Query: 158 FVLSKQNRMIEAD 170
             L K+ + I  +
Sbjct: 764 DGLIKRRKSISKE 776


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 169/312 (54%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+ PD   Y S + GMC  GR E A  +  +M + G+ P  VT+N LID  C  G 
Sbjct: 264 MKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGK 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      M+++G  P   TYN LI    +E ++ +A D+   M  KGI  D+++YN+
Sbjct: 324 MEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNV 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G   +A  L+ EM+ K I PT++TY +L+  L ++ ++ +A  LF       
Sbjct: 384 LINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHD 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +N L+DG C N ++  A  L   ++     P    +N L+ G C+  K+E AR
Sbjct: 444 LTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAR 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L +++   G++P+ I       TY  +I GLCK+ + + A++L   M  KG  P+  T+
Sbjct: 504 ELFNRLSHEGLEPNVI-------TYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTF 556

Query: 301 FSLIEGIASVDK 312
            +L+ G    D+
Sbjct: 557 NTLMRGFCQNDE 568



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++P+   Y + +  +CK+G +++   +  +MK  G+ P  V Y+++I G C+ G  E A 
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +EMV +G+ P   T+N+LI  L    KM EA+ +LK M ++G  PD+ TYN LI+G+
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGF 353

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G    A  L   M  KGI+   ++Y  LI    K  RM+EA +L+   + K ++P +
Sbjct: 354 CLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTV 413

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N L+ G    G +  A++L  EM    + P+  TYN L+ G C+   + EA  L   
Sbjct: 414 ITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHY 473

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           ++          F P+   +N LI GLCK ++ ++A EL   +  +G+ P+  TY  +I 
Sbjct: 474 LENH-------DFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIH 526

Query: 306 GIA 308
           G+ 
Sbjct: 527 GLC 529



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 168/322 (52%), Gaps = 13/322 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P++ T+ S V G+C   R+ EA+ +L +M   G  P  VTY TL++G C  GN
Sbjct: 153 MLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGN 212

Query: 61  LEMAFSFRDEMVKQG------IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
             +A    +EM+         I P    Y  +I  L  +  + +  ++  EM  +GI PD
Sbjct: 213 TMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPD 272

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            + Y+ +I+G C  G  + A  L +EM+ +G+ P ++T+  LI  L K  +M EA+ L +
Sbjct: 273 VVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLK 332

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G  PD   +N LIDG C  G I+ A  L   M+   +  D V+YN L++G C+ G
Sbjct: 333 LMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSG 392

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           ++ EA++L  +M  + I        PT +TYN L+ GL +  +   A  L  EM    +T
Sbjct: 393 RMVEAKKLYREMMCKEIM-------PTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLT 445

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           P+  TY  L++G+   +  +E+
Sbjct: 446 PESCTYNILLDGLCKNNHLSEA 467



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 158/315 (50%), Gaps = 13/315 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P   ++ + +  + K  R  +   + ++M   GL P  +T N LI+ YCN   ++   + 
Sbjct: 90  PPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAV 149

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM+++G  P   T+  L+  L +  ++ EA  +L++M   G  P+ +TY  L+NG C 
Sbjct: 150 LGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCM 209

Query: 128 CGNAKKAFSLHDEMIHKG------IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            GN   A  LH+EM++        I+P ++ Y ++I  L K   + +  +LF     +G+
Sbjct: 210 TGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGI 269

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD+V ++++I G C  G  E A  L  EM    VHP+ VT+N L+   C+ GK+EEA  
Sbjct: 270 SPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANH 329

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL  M +RG  PD         TYN LI G C     D A +L   M SKGI  D  +Y 
Sbjct: 330 LLKLMIQRGESPD-------TFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYN 382

Query: 302 SLIEGIASVDKAAES 316
            LI G     +  E+
Sbjct: 383 VLINGYCKSGRMVEA 397



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 140/254 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD++TY + + G C EGR+++A  +   M+  G+   AV+YN LI+GYC  G 
Sbjct: 334 MIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGR 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM+ + IMPT  TYN L+  L  E K+ +A ++  EM    + P+S TYNI
Sbjct: 394 MVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNI 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+  +  +A  L   + +   QP++  +  LI  L K  ++  A +LF     +G
Sbjct: 454 LLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +  +I G C +G +E A  L   M+     P+ VT+NTLM G C+  ++++  
Sbjct: 514 LEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVV 573

Query: 241 RLLDQMKRRGIKPD 254
            LL +M  +   PD
Sbjct: 574 ELLQEMAEKDFSPD 587



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 160/320 (50%), Gaps = 13/320 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  T    ++  C   +++    +L +M   G  P  VT+ +L+ G C    +  A
Sbjct: 122 GLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEA 181

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKG----IVPDSITY 118
                +MV+ G  P   TY  L++ L M    + A  + +EM  G  G    I P+ + Y
Sbjct: 182 TGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCY 241

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             +I+  C+ G   K   L  EM  +GI P ++ Y+S+I  +    R   A  LF   + 
Sbjct: 242 CTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVD 301

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P++V FN LID  C  G +E A  LLK M +    PD  TYNTL+ G C +G++++
Sbjct: 302 EGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDD 361

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR L   M+ +GI+ D +S       YN LI G CK+     A++L REM+ K I P   
Sbjct: 362 ARDLFVSMESKGIETDAVS-------YNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVI 414

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY +L+ G+    K  ++ N
Sbjct: 415 TYNTLLTGLFREGKVRDAWN 434



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 129/250 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S+G++ D+ +Y   ++G CK GR+ EA ++  +M    ++PT +TYNTL+ G   +G 
Sbjct: 369 MESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGK 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A++   EM    + P + TYN+L+  L     + EA ++   +      P    +N 
Sbjct: 429 VRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNC 488

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+    + A  L + + H+G++P ++TYT +I  L K  ++  A  LF     KG
Sbjct: 489 LIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKG 548

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V FN L+ G C N  +++   LL+EM      PD  T + ++    +  K  E  
Sbjct: 549 CAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYL 608

Query: 241 RLLDQMKRRG 250
            LL     +G
Sbjct: 609 HLLPTFPAQG 618



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 138/289 (47%), Gaps = 36/289 (12%)

Query: 56  CNKGNLEM--AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           C  G+++   AFS  + ++     P  S++N L+  +   ++  +   + K M   G+ P
Sbjct: 66  CKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAP 125

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D IT NILIN YC         ++  EM+ +G  P  +T+TSL+  L   +R+ EA  L 
Sbjct: 126 DFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLL 185

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR------MKVHPDEVTYNTLM 227
              +  G  P++V +  L++G C  GN   A  L +EM        + + P+ V Y T++
Sbjct: 186 RKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTII 245

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISF----------------------------N 259
              C+ G +++ + L  +MK RGI PD +++                            +
Sbjct: 246 DSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVH 305

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           P  +T+N LI  LCK  + + A  LL+ M+ +G +PD  TY +LI+G  
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFC 354


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/321 (36%), Positives = 175/321 (54%), Gaps = 10/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSRG+ P+  TY   V G CK G L+EA+ ++E M +N L+P   TYN LI+G CN+G 
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF  RDEM    ++P   +YN LI+  L   K+ EA  +L+EM EKG+ P+++T+NI
Sbjct: 329 IEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNI 388

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ G    A +   +M   G  P  +TY +LI    K   M EA +  +    K 
Sbjct: 389 MVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKN 448

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  D V  N ++   C    +E A+ LL    +     DEV+Y TL+ G  + G V+ A 
Sbjct: 449 MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRAL 508

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+MK + I P  +       TYN +I GLC+  + + A   L E++  G+ PD+ TY
Sbjct: 509 KLWDEMKEKEIIPSTV-------TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTY 561

Query: 301 FSLIEGI---ASVDKAAESSN 318
            +++ G      V+KA +  N
Sbjct: 562 NTILHGYCREGDVEKAFQFHN 582



 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P++ T+   V   CKEG++++AS  + +M+E+G  P  VTYNTLI+GYC  GN
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   DEM ++ +   + T N ++  L  E+K+ EA  +L    ++G   D ++Y  
Sbjct: 434 MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGT 493

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY + GN  +A  L DEM  K I P+ +TY  +I  L +  +  +A       L  G
Sbjct: 494 LIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESG 553

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD   +N ++ G+C  G++E+AF    +M      PD  T N L+ G C +G +E+A 
Sbjct: 554 LLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKAL 613

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G   D +       TYN LI  LCK    D A  LL EM  K + PD  TY
Sbjct: 614 KLFNTWVSKGKAIDTV-------TYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTY 666

Query: 301 FSLIEGIASVDKAAES 316
            ++I  +    +  E+
Sbjct: 667 NAIITALTDSGRIREA 682



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 172/329 (52%), Gaps = 16/329 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + ++ DS T  + +  +C+E +LEEA ++L   ++ G     V+Y TLI GY   GN
Sbjct: 444 MGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGN 503

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    DEM ++ I+P+  TYN +I  L    K  +A   L E+ E G++PD  TYN 
Sbjct: 504 VDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNT 563

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYCR G+ +KAF  H++M+    +P + T   L+  L  +  + +A +LF  +++KG
Sbjct: 564 ILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKG 623

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D V +N LI   C  G ++ AF+LL EM+  ++ PD  TYN ++      G++ EA 
Sbjct: 624 KAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAE 683

Query: 241 RLLDQMKRRGIKPDHI---SFNPT-------------RLTYNALIQGLCKNQEGDLAEEL 284
             + +M  +G  P  +     N T              + Y+  I+ LC   +   A  +
Sbjct: 684 EFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRI 743

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKA 313
             E   KGIT D +TY +L++G+    K+
Sbjct: 744 FGESKQKGITVDKSTYINLMDGLIKRRKS 772



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 164/316 (51%), Gaps = 10/316 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG---YCNKGN 60
           R   P      + +    + G+   A ++ ++MK   L P  +T NTL++    Y +  +
Sbjct: 129 RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHS 188

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  +    ++ +K GI+P  +T+N++I+   +E K  +A + L  MG+    PD++TYN 
Sbjct: 189 VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C+ G    A  L  +M  +G+ P   TY  L++   K   + EA  + E      
Sbjct: 249 ILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+  +N LI+G C  G IE AF L  EM+ +K+ PD V+YNTL++G     K+ EA 
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAF 368

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL++M  +G+KP+ +       T+N +++  CK  + D A   + +M   G +PD  TY
Sbjct: 369 KLLEEMSEKGVKPNAV-------THNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTY 421

Query: 301 FSLIEGIASVDKAAES 316
            +LI G        E+
Sbjct: 422 NTLINGYCKAGNMGEA 437



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---ERKMVEA 99
           P+    +T I  Y   G    AF    +M +  + P   T N L++ L+       +  +
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
            +   +  + GIVP+  T+NI+I GYC     K A    + M      P  +TY +++  
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDA 252

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K+ R+ +A  L  +  ++G+LP+   +N L+ G+C  G ++ A ++++ M +  + PD
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPD 312

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             TYN L++G C +G++EEA +L D+M+   + PD +S       YN LI G  +  +  
Sbjct: 313 VWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVS-------YNTLINGCLEWSKIS 365

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
            A +LL EM  KG+ P+  T+  +++      K  ++SN+
Sbjct: 366 EAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 23/193 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M     +PD +T    + G+C EG LE+A ++       G     VTYNTLI   C +G 
Sbjct: 584 MVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGR 643

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI---- 116
           L+ AF+   EM ++ + P   TYN +I  L    ++ EA++ + +M EKG +P  +    
Sbjct: 644 LDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLD 703

Query: 117 -------------------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
                               Y+  I   C  G  K A  +  E   KGI     TY +L+
Sbjct: 704 XNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLM 763

Query: 158 FVLSKQNRMIEAD 170
             L K+ + I  +
Sbjct: 764 DGLIKRRKSISKE 776


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 171/341 (50%), Gaps = 25/341 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD +TY   + G+CK  + ++AS ML +M + G+ P  VT+N+++DG C  G 
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A S    M ++   P+  TYN LI  L  ++ +  A  ++ E    G VPD +TY+I
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +G C+ G   +AF L  EM   G  P ++TY +LI  L K ++  +A +L E  ++ G
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  ++DG C  G +++A  +++ M +    P  +TY  LM G CR G+V+EA 
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 240

Query: 241 RLLDQMKRRGIKPDHISF-------------------------NPTRLTYNALIQGLCKN 275
            +  +M  +    D +++                          P    YNAL+ G CK 
Sbjct: 241 HIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKE 300

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              D    +  +M  +G  P+  TY  +++G+    K  E+
Sbjct: 301 GRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 341



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 164/316 (51%), Gaps = 14/316 (4%)

Query: 5   GVQPDSY--TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           G++   Y   Y + + G CKEGRL+E   + E M   G VP   TYN ++DG C  G ++
Sbjct: 280 GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVD 339

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF F + M   G +P   +YN++I  L    K  EA  +L +M + GI PD++TYN L+
Sbjct: 340 EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLM 399

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-M 181
             +C+      A  +   MI  G+ P  +TY +LI  LS+ NR+ +A +L    L  G +
Sbjct: 400 AQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 459

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +     +N +ID  C  G +++A  L+  M    V  + VTYN  +   C++G+++EA  
Sbjct: 460 VSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASS 519

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS-KGITPDDNTY 300
           LL +M       D +S       Y  +I GLCK ++ D A +L REMV+ KG+    +T+
Sbjct: 520 LLSEMDTL---RDEVS-------YTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTF 569

Query: 301 FSLIEGIASVDKAAES 316
             LI+      +  E+
Sbjct: 570 NLLIDAFTKTKRLDEA 585



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 170/346 (49%), Gaps = 33/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+  TY   + G+CK G+++EA   LE M   G VP  V+YN +IDG      
Sbjct: 313 MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 372

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D+M++ GI P A TYN L+ +   E +  +A  +LK M + G+ PD++TYN 
Sbjct: 373 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 432

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G  +      A+ L  EM+  G +     TY ++I  L K+  + +A  L ++    
Sbjct: 433 LISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGH 492

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  + V +N  ID  C  G ++ A SLL EMD ++   DEV+Y T++ G C+  +++ A
Sbjct: 493 GVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---DEVSYTTVIIGLCKAEQLDRA 549

Query: 240 RRLLDQM-KRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
            +L  +M   +G+     +FN                            P+ +TYN +I 
Sbjct: 550 SKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVIT 609

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            LCK  + D A EL  EM  +GI     +Y  LI G+    +  E+
Sbjct: 610 CLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEA 655



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 178/414 (42%), Gaps = 100/414 (24%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G  PD  TY     G+CK GR++EA  ++++M  NG  P  VTYNTLIDG C     E
Sbjct: 108 SSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTE 167

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+   + +V  G +P   TY +++  L  E ++ +A  M++ M ++G  P  ITY  L+
Sbjct: 168 KAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 227

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL---------- 172
            G CR G   +A  +  EM+ K      L Y SL+    K +R  EA ++          
Sbjct: 228 EGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYI 287

Query: 173 ----------------------FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
                                 FE+   +G +P+I  +N ++DG C +G ++ AF  L+ 
Sbjct: 288 DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLES 347

Query: 211 M--------------------------------DRM---KVHPDEVTYNTLMHGRCRQGK 235
           M                                D+M    + PD VTYNTLM   C++ +
Sbjct: 348 MHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEER 407

Query: 236 VEEARRLLDQMKRRGIKPDHISFNP--------TRL---------------------TYN 266
            ++A  +L  M + G+ PD++++N          RL                     TYN
Sbjct: 408 FDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYN 467

Query: 267 ALIQGLCKNQEGDLAEELL--REMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            +I  LCK  EG L + LL    M   G+  +  TY   I+ +    +  E+S+
Sbjct: 468 TIIDRLCK--EGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASS 519



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 37/293 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVT-YNTLIDGYCNKG 59
           M   GV PD+ TY + +SG+ +  RL +A  ++ +M  NG V +A T YNT+ID  C +G
Sbjct: 418 MIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 477

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM------------- 106
            L+ A    D M   G+     TYN+ I  L  E ++ EA  +L EM             
Sbjct: 478 CLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVI 537

Query: 107 --------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
                                 KG+   S T+N+LI+ + +     +A +L + M+ +G 
Sbjct: 538 IGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGC 597

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P+++TY  +I  L K +++ +A +LF+    +G++   V +  LI G C  G  + A  
Sbjct: 598 SPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQ 657

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
           +L+EM       D++    L      QG+ EEA  LL   +R   K D +S +
Sbjct: 658 VLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELL---RRMTTKMDSLSLD 707


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 183/314 (58%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + ++G+C EG++ +A  ++++M ENG  P  VTYN++++G C  G+  +A
Sbjct: 153 GYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLA 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    +M ++ +     TY+ +I  L  +  +  A  + KEM  KGI    +TYN L+ G
Sbjct: 213 FDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G       L  +M+ + I P ++T+  L+ V  K+ ++ EA++L++  + +G+ P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ +N L+DG+C    +  A ++L  M R K  PD VT+ +L+ G C   +V++  ++  
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + +RG+  + +       TY+ L+QG C++ +  LAEEL +EMVS G+ PD  TY  L+
Sbjct: 393 NISKRGLVANAV-------TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 305 EGIA---SVDKAAE 315
           +G+     ++KA E
Sbjct: 446 DGLCDNGKLEKALE 459



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 166/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++    TY S V G+CK G+  + + +L+ M    +VP  +T+N L+D +  +G 
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM+ +GI P   TYN L+    M+ ++ EA++ML  M      PD +T+  
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC          +   +  +G+    +TY+ L+    +  ++  A++LF+  ++ G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ +  L+DG C NG +E+A  + +++ + K+    V Y T++ G C+ GKVE+A 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+        +TY  +I GLCK      A  LLR+M   G  P+D TY
Sbjct: 494 NLFCSLPCKGVKPNV-------MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546

Query: 301 FSLIEG 306
            +LI  
Sbjct: 547 NTLIRA 552



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TY S V+G+C+ G    A  ML +M+E  +     TY+T+ID  C  G 
Sbjct: 184 MVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S   EM  +GI  +  TYN L+  L    K  +   +LK+M  + IVP+ IT+N+
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ + + G  ++A  L+ EMI +GI P ++TY +L+     QNR+ EA+ + +  +   
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV F +LI G+C    ++    + + + +  +  + VTY+ L+ G C+ GK++ A 
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ PD        +TY  L+ GLC N + + A E+  ++    +      Y
Sbjct: 424 ELFQEMVSHGVLPDV-------MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476

Query: 301 FSLIEGIASVDKAAESSN 318
            ++IEG+    K  ++ N
Sbjct: 477 TTIIEGMCKGGKVEDAWN 494



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 172/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R V+ D +TY + +  +C++G ++ A  + ++M+  G+  + VTYN+L+ G C  G 
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                    +MV + I+P   T+N+L+   + E K+ EA+++ KEM  +GI P+ ITYN 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC      +A ++ D M+     P ++T+TSLI       R+ +  ++F N   +G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ + V ++ L+ G C +G I+ A  L +EM    V PD +TY  L+ G C  GK+E+A 
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +++  +    +        Y  +I+G+CK  + + A  L   +  KG+ P+  TY
Sbjct: 459 EIFEDLQKSKMDLGIV-------MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511

Query: 301 FSLIEGIASVDKAAESS 317
             +I G+      +E++
Sbjct: 512 TVMISGLCKKGSLSEAN 528



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 148/271 (54%), Gaps = 3/271 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P+  TY + + G C + RL EA+ ML+ M  N   P  VT+ +LI GYC    
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR 383

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++        + K+G++  A TY++L+       K+  A+++ +EM   G++PD +TY I
Sbjct: 384 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 443

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + +++    +   ++ YT++I  + K  ++ +A  LF +   KG
Sbjct: 444 LLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 503

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +  +I G C  G++  A  LL++M+     P++ TYNTL+    R G +  + 
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
           +L+++MK  G   D  S    ++  + L+ G
Sbjct: 564 KLIEEMKSCGFSADASSI---KMVIDMLLSG 591



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 7/292 (2%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           ++A  + ++M  +  +P  V ++             +   F  ++   GI     T N++
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           I+      K   A  +L ++ + G  PD+ T+N LING C  G   KA  L D M+  G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGC 189

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           QP M+TY S++  + +      A  +      + +  D+  ++ +ID  C +G I+ A S
Sbjct: 190 QPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L KEM+   +    VTYN+L+ G C+ GK  +   LL  M  R I P+ I       T+N
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI-------TFN 302

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L+    K  +   A EL +EM+++GI+P+  TY +L++G    ++ +E++N
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++ + P  +TY S + G+C   R +EAS +L +M    ++P  VT+N L+D +C +G 
Sbjct: 141 MKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGK 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P   TYN L++   M  ++VEA  +   M  KG  PD  +Y+I
Sbjct: 201 VLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSI 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A  L +EMIH+G  P  ++Y +LI  L +  R+ EA  LF+N    G
Sbjct: 261 LINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNG 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP++  +  L+DG C  G + +AF L + M    + P+ V YN L++  C+ G +++AR
Sbjct: 321 NLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDAR 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++   G++P+          Y  +I GLCK    D A E  R M   G  PD+ +Y
Sbjct: 381 ELFSELFVIGLQPN-------VQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSY 433

Query: 301 FSLIEGI 307
             +I G 
Sbjct: 434 NVIIRGF 440



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 167/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P++ T    ++  C+  R++    +L +  + GL PT VT+ TLI+G    G 
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+MV +G  P   TY  +I+ L    +   A  + K+M E G   + +TY+ 
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+     +A  +   M  K I PT+ TYTSLI  L   +R  EA  L     +  
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V FN L+D  C  G +  A  +LK M  M V PD VTYN+LM+G     +V EAR
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEAR 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D M  +G KPD  S       Y+ LI G CK +  D A++L  EM+ +G TP++ +Y
Sbjct: 241 KLFDVMITKGCKPDVFS-------YSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSY 293

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI G+  + +  E+ +
Sbjct: 294 NTLIHGLCQLGRLREAQD 311



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 171/347 (49%), Gaps = 31/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG QPD YTY + ++G+CK G    A+ + ++M+E G     VTY+TLI   C    
Sbjct: 71  MVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRR 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  + I PT  TY  LI  L    +  EA  +L EM    I+P+ +T+N+
Sbjct: 131 VNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNV 190

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+ G    A  +   M   G++P ++TY SL++  S    ++EA +LF+  + KG
Sbjct: 191 LVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKG 250

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  ++ LI+G+C    I+ A  L  EM      P+ V+YNTL+HG C+ G++ EA+
Sbjct: 251 CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQ 310

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            L   M   G  P+  ++                             P  + YN L+  +
Sbjct: 311 DLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM 370

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAES 316
           CK+     A EL  E+   G+ P+   Y ++I G+     +D+A E+
Sbjct: 371 CKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEA 417



 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 128/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PD  TY S + G      + EA ++ + M   G  P   +Y+ LI+GYC    
Sbjct: 211 MTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKR 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM+ QG  P   +YN LIH L    ++ EA D+ K M   G +P+  TY I
Sbjct: 271 IDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAI 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G   KAF L   M    ++P ++ Y  L+  + K   + +A +LF      G
Sbjct: 331 LLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIG 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++ ++  +I+G C  G ++ A    + M+     PDE +YN ++ G  +      A 
Sbjct: 391 LQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAV 450

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+ RG   D
Sbjct: 451 HLIGEMRDRGFITD 464



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S  ++P+   Y   V+ MCK G L++A  +  ++   GL P    Y T+I+G C +G 
Sbjct: 351 MQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGL 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           L+ A      M   G  P   +YN++I   L  +    A  ++ EM ++G + D+ T
Sbjct: 411 LDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 173/306 (56%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD++TYG+ ++G+CK GRL+EA  +L++M  +GL P  V Y TL+DG+  +G 
Sbjct: 306 MVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGK 365

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF   +EM+  G+ P    Y+ LI  L    ++  A  +L EM + G  PD+ TY+ 
Sbjct: 366 AAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHP 425

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+ +  +   AF L +EM + GI P   TY  +I  L +     EA  L E  +++G
Sbjct: 426 LMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEG 485

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  M+  LI GH   G+I  A   L+ M +  V PD   YN+L+ G    G++EEA 
Sbjct: 486 LKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAE 545

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               Q+++RG+ PD         TY+ LI G CK +  + A++LL++M++ G+ P+ +TY
Sbjct: 546 EYYAQVQKRGLVPD-------EFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTY 598

Query: 301 FSLIEG 306
             L+EG
Sbjct: 599 TDLLEG 604



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD YTY +F+   CK    + A ++ E+M+        VTYN +I G C  G 
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 295

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F++EMV  G+ P A TY  L++ L    ++ EA  +L EM   G+ P+ + Y  
Sbjct: 296 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ + G A +AF + +EMI  G+QP  + Y +LI  L K  ++  A +L    +  G
Sbjct: 356 LVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVG 415

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   ++ L+ GH  + + + AF LL EM    + P+  TY  +++G C+ G+ +EA 
Sbjct: 416 HRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAG 475

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M   G+KP+   + P       LI G  K     LA E L  M    + PD   Y
Sbjct: 476 NLLEEMISEGLKPNAFMYAP-------LIIGHSKEGHISLACESLENMTKANVLPDLFCY 528

Query: 301 FSLIEGIASVDKAAES 316
            SLI+G+++V +  E+
Sbjct: 529 NSLIKGLSTVGRIEEA 544



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 176/343 (51%), Gaps = 42/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P++YTYG  ++G+C+ G  +EA  +LE+M   GL P A  Y  LI G+  +G+
Sbjct: 446 MRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGH 505

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    + M K  ++P    YN LI  L    ++ EA++   ++ ++G+VPD  TY+ 
Sbjct: 506 ISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSG 565

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           LI+GYC+  N +KA  L  +M++ G++P   TYT L+    K N   +   + ++ L   
Sbjct: 566 LIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSG 625

Query: 180 ----------------------------------GMLPDIVMFNALIDGHCTNGNIERAF 205
                                             G++PD+ ++++LI G C   ++E+A 
Sbjct: 626 DKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAV 685

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            LL EM +  + P  V YN L+ G CR G +  AR + D +  +G+ P+ +       TY
Sbjct: 686 GLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCV-------TY 738

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            ALI G CKN +   A +L ++M+ +GI PD   Y  L  G +
Sbjct: 739 TALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCS 781



 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 166/316 (52%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG+ PD +TY   + G CK   LE+A ++L+QM  +GL P A TY  L++GY    +
Sbjct: 551 VQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSND 610

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E   S    M+  G  P    Y ++I  L     M  A  +L E+ + G+VPD   Y+ 
Sbjct: 611 HEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSS 670

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + +KA  L DEM  +G++P ++ Y +LI    +   +  A  +F++ LAKG
Sbjct: 671 LISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKG 730

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V + ALIDG+C NG+I  AF L K+M    + PD   YN L  G      +E+A 
Sbjct: 731 LLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQAL 790

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M  RG    H+S       ++ L++G CK       E+LL  M+ + I P+  T 
Sbjct: 791 FLTEEMFNRGYA--HVSL------FSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTV 842

Query: 301 FSLIEGIASVDKAAES 316
            ++I       K  E+
Sbjct: 843 ENVITEFGKAGKLCEA 858



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 169/317 (53%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GVQP+   Y + + G+CK G+L  AS++L +M + G  P   TY+ L+ G+    +
Sbjct: 376 MISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYD 435

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   +EM   GI+P A TY ++I+ L    +  EA ++L+EM  +G+ P++  Y  
Sbjct: 436 KDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAP 495

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+ + G+   A    + M    + P +  Y SLI  LS   R+ EA++ +     +G
Sbjct: 496 LIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRG 555

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   ++ LI G+C   N+E+A  LL++M    + P+  TY  L+ G  +    E+  
Sbjct: 556 LVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVS 615

Query: 241 RLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L  M   G KPD HI        Y  +I+ L +++  ++A  +L E+   G+ PD + 
Sbjct: 616 SILQSMLGSGDKPDNHI--------YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHI 667

Query: 300 YFSLIEGI---ASVDKA 313
           Y SLI G+   A ++KA
Sbjct: 668 YSSLISGLCKMADMEKA 684



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 7/297 (2%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           K G +  A++++  M + GL PT    N L+        +E+ +  +  M   GI P   
Sbjct: 187 KNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVY 246

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TY+  +      R    A  + +EM  +    + +TYN++I+G CR G  ++AF   +EM
Sbjct: 247 TYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEM 306

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +  G+ P   TY +L+  L K  R+ EA  L +     G+ P++V++  L+DG    G  
Sbjct: 307 VDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKA 366

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
             AF +L EM    V P+++ Y+ L+ G C+ G++  A +LL++M + G +PD  +++P 
Sbjct: 367 AEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHP- 425

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
                 L+QG  ++ + D A ELL EM + GI P+  TY  +I G+    ++ E+ N
Sbjct: 426 ------LMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGN 476



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 155/306 (50%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P        +  + +   +E   ++   M+  G+ P   TY+T ++ +C   +
Sbjct: 201 MGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARD 260

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EM ++       TYN++I  L     + EA    +EM + G+ PD+ TY  
Sbjct: 261 FDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGA 320

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G  K+A +L DEM   G++P ++ Y +L+    K+ +  EA  +    ++ G
Sbjct: 321 LMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAG 380

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ +M++ LI G C  G + RA  LL EM ++   PD  TY+ LM G  +    + A 
Sbjct: 381 VQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAF 440

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M+  GI P+         TY  +I GLC+N E   A  LL EM+S+G+ P+   Y
Sbjct: 441 ELLNEMRNSGILPN-------AYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 493

Query: 301 FSLIEG 306
             LI G
Sbjct: 494 APLIIG 499



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD++ Y    +G      LE+A  + E+M   G    ++ ++TL+ G+C +G 
Sbjct: 761 MLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSL-FSTLVRGFCKRGR 819

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+        M+ + I+P A T   +I E     K+ EA  +  E+ +K
Sbjct: 820 LQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQK 868



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 63/194 (32%)

Query: 186 VMFNALIDGHCTNGNIERAF-------------------SLLKEMDRMK----------- 215
            + + L+D +  NG++  A                     LLK++ R             
Sbjct: 176 AVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGF 235

Query: 216 -----VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------- 259
                + PD  TY+T +   C+    + A+++ ++M+RR    + +++N           
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 295

Query: 260 -----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
                            P   TY AL+ GLCK      A+ LL EM   G+ P+   Y +
Sbjct: 296 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 303 LIEGIASVDKAAES 316
           L++G     KAAE+
Sbjct: 356 LVDGFMKEGKAAEA 369


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 177/331 (53%), Gaps = 31/331 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R +  +  T+   ++G+CK G+ ++A  ++E MK  G  P+ +TYNT+IDGYC  G 
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGK 279

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   EMV + I P   T+N+LI     +  +  A  + +EM  +G+ P+ +TYN 
Sbjct: 280 MFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS 339

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C  G   +A  L D+M   G++P ++TY +LI    K+  + EA ++ ++   +G
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRG 399

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ FN LID +   G ++ AF L   M    V P+  TYN L+ G CR+G V+EAR
Sbjct: 400 LAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEAR 459

Query: 241 RLLDQMKRRGIKPDHISFN----------PTR---------------------LTYNALI 269
           +L  +M+  G+K D +++N           TR                     +TYN LI
Sbjct: 460 KLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLI 519

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +G C   + + A  LL EM+ KG+ P+  TY
Sbjct: 520 KGFCNKGKLEEANRLLNEMLEKGLIPNRTTY 550



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 151/265 (56%), Gaps = 3/265 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ + P+  T+   + G C++  +  A ++ E+M+  GL P  VTYN+LI+G C+ G 
Sbjct: 290 MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGK 349

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A   +D+M   G+ P   TYN LI+    ++ + EA +ML ++G++G+ P+ IT+N 
Sbjct: 350 LDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y + G    AF L   M+  G+ P + TY  LI    ++  + EA +L +     G
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV---HPDEVTYNTLMHGRCRQGKVE 237
           +  D+V +N L+D  C  G   +A  LL EM  M+      + VTYN L+ G C +GK+E
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLE 529

Query: 238 EARRLLDQMKRRGIKPDHISFNPTR 262
           EA RLL++M  +G+ P+  +++  R
Sbjct: 530 EANRLLNEMLEKGLIPNRTTYDILR 554



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 163/321 (50%), Gaps = 28/321 (8%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            V    K G ++ A    ++  + G   +A++ N ++     +G + +  S   EM+++ 
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR 224

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I     T++++I+ L    K  +A D++++M   G  P  ITYN +I+GYC+ G   KA 
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
           +L  EM+ K I P  +T+  LI    +   +  A ++FE    +G+ P++V +N+LI+G 
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C+NG ++ A  L  +M  M + P+ VTYN L++G C++  ++EAR +LD + +RG+ P+ 
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV 404

Query: 256 ISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLRE 287
           I+FN                            P   TYN LI G C+      A +L +E
Sbjct: 405 ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKE 464

Query: 288 MVSKGITPDDNTYFSLIEGIA 308
           M   G+  D  TY  L++ + 
Sbjct: 465 MEGNGLKADLVTYNILVDALC 485



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 148/262 (56%), Gaps = 7/262 (2%)

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
           ++  + L+  Y   G +++A    D     G   +A + N ++  L+ E ++   + + K
Sbjct: 159 SIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYK 218

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           EM  + I  + +T++++ING C+ G  +KA  + ++M   G  P+++TY ++I    K  
Sbjct: 219 EMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAG 278

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           +M +AD L +  +AK + P+ + FN LIDG C + N+  A  + +EM R  + P+ VTYN
Sbjct: 279 KMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYN 338

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           +L++G C  GK++EA  L D+M   G+KP+ +       TYNALI G CK +    A E+
Sbjct: 339 SLINGLCSNGKLDEALGLQDKMSGMGLKPNVV-------TYNALINGFCKKKMLKEAREM 391

Query: 285 LREMVSKGITPDDNTYFSLIEG 306
           L ++  +G+ P+  T+ +LI+ 
Sbjct: 392 LDDIGKRGLAPNVITFNTLIDA 413



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 105/239 (43%), Gaps = 61/239 (25%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+  TY + ++G CK+  L+EA  ML+ + + GL P  +T+NTLID Y   G 
Sbjct: 360 MSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGR 419

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF  R  M+  G+ P  STYN LI     E  + EA  + KEM   G+  D +TYNI
Sbjct: 420 MDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNI 479

Query: 121 L--------------------------------------INGYCRCGNAKKAFSLHDEMI 142
           L                                      I G+C  G  ++A  L +EM+
Sbjct: 480 LVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEML 539

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
            KG+ P   TY                D L +  + KG +PD       IDGH  N +I
Sbjct: 540 EKGLIPNRTTY----------------DILRDEMMEKGFIPD-------IDGHLYNVSI 575



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 111/214 (51%), Gaps = 8/214 (3%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           L  +G  G   +SI  ++L+  Y + G    A    D     G + + L+   ++  L K
Sbjct: 148 LSVLGSWG-CANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVK 206

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + R+   + +++  + + +  ++V F+ +I+G C  G  ++A  ++++M      P  +T
Sbjct: 207 EGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVIT 266

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           YNT++ G C+ GK+ +A  LL +M  + I P+ I       T+N LI G C+++    A+
Sbjct: 267 YNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEI-------TFNILIDGFCRDENVTAAK 319

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           ++  EM  +G+ P+  TY SLI G+ S  K  E+
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEA 353


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 168/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P+  TY S +S +C  GR  +ASR+L  M E  + P   T++ LID +  +G 
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEMVK+ I P+  TY+ LI+   M  ++ EA  M + M  K   PD ++Y+ 
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYST 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+     +   L  EM  +G+    +TYT+LI  L +      A ++F+  ++ G
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N L+DG C NG +E+A  + + + R K+ P   TYN ++ G C+ GKVE+  
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD ++       YN +I G C+    + A+ L +EM   G  P+   Y
Sbjct: 522 DLFCNLSLKGVKPDVVA-------YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574

Query: 301 FSLIEG 306
            +LI  
Sbjct: 575 NTLIRA 580



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 173/315 (54%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  + YTY   ++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 107 MQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+M   G  P   T+N LIH L +  K  EA  ++  M  KG  PD +TY +
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGV 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   AF L ++M    ++P +L YT++I  L K   M +A  LF+    KG
Sbjct: 227 VVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +++LI   C  G    A  LL +M   K++PD  T++ L+    ++GK+ EA 
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAE 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M +R I       +P+ +TY++LI G C +   D A+++   MVSK   PD  +Y
Sbjct: 347 KLYDEMVKRSI-------DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSY 399

Query: 301 FSLIEGIASVDKAAE 315
            +LI+G     +  E
Sbjct: 400 STLIKGFCKAKRVDE 414



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 174/304 (57%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QP++ T+ + + G+    +  EA  ++++M   G  P  VTY  +++G C +G+ ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   ++M +  + P    Y  +I  L   + M +A ++ KEM  KGI P+ +TY+ LI+ 
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G    A  L  +MI + I P + T+++LI    K+ +++EA++L++  + + + P 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +++LI+G C +  ++ A  + + M      PD V+Y+TL+ G C+  +V+E   L  
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFR 420

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M +RG+  + +       TY  LIQGL +  + D+A+E+ +EMVS G+ P+  TY +L+
Sbjct: 421 EMSQRGLVGNTV-------TYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473

Query: 305 EGIA 308
           +G+ 
Sbjct: 474 DGLC 477



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 174/336 (51%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G QPD  TYG  V+G+CK G  + A  +L +M++  L P  + Y T+IDG C   +
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKH 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M E+ I PD  T++ 
Sbjct: 272 MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEM+ + I P+++TY+SLI      +R+ EA Q+FE  ++K 
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V ++ LI G C    ++    L +EM +  +  + VTY TL+ G  + G  + A+
Sbjct: 392 CFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQ 451

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +  +M   G+ P+ +++N                            PT  TYN +I+G+
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + +   +L   +  KG+ PD   Y ++I G  
Sbjct: 512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 130/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P   TY S ++G C   RL+EA +M E M      P  V+Y+TLI G+C    
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKR 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G++    TY  LI  L        A ++ KEM   G+ P+ +TYN 
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  +KA  + + +    ++PT+ TY  +I  + K  ++ +   LF N   KG
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I G C  G+ E A +L KEM      P+   YNTL+  R R G  E + 
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+  G   D
Sbjct: 592 ELIKEMRSCGFAGD 605



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 154/294 (52%), Gaps = 7/294 (2%)

Query: 23  EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST 82
           E +L++A  +  +M ++   P+ + ++ L+         ++  S  ++M   G+     T
Sbjct: 59  ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYT 118

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y++LI+      ++  A  +L +M + G  P+ +T + L+NGYC      +A +L D+M 
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             G QP  +T+ +LI  L   N+  EA  L +  +AKG  PD+V +  +++G C  G+ +
Sbjct: 179 VTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            AF LL +M++ K+ P  + Y T++ G C+   +++A  L  +M+ +GI+P+ +      
Sbjct: 239 LAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVV------ 292

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY++LI  LC       A  LL +M+ + I PD  T+ +LI+      K  E+
Sbjct: 293 -TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 129/257 (50%), Gaps = 7/257 (2%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   EMVK    P+   ++ L+  +    K      + ++M   G+  +  TY+I
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSI 121

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +CR      A ++  +M+  G +P ++T +SL+       R+ EA  L +     G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V FN LI G   +     A +L+  M      PD VTY  +++G C++G  + A 
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M++  ++P         L Y  +I GLCKN+  D A  L +EM +KGI P+  TY
Sbjct: 242 ILLNKMEQGKLEPG-------VLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 301 FSLIEGIASVDKAAESS 317
            SLI  + +  + +++S
Sbjct: 295 SSLISCLCNYGRWSDAS 311



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++P  YTY   + GMCK G++E+   +   +   G+ P  V YNT+I G+C KG+ E A 
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           +   EM + G +P +  YN LI   L +     + +++KEM   G   D+ T  ++ N
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 614



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+PD   Y + +SG C++G  EEA  + ++MKE+G +P +  YNTLI      G+ E 
Sbjct: 530 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREA 589

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM   G    AST  L+ + L
Sbjct: 590 SAELIKEMRSCGFAGDASTIGLVTNML 616


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 178/318 (55%), Gaps = 11/318 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           + G Q D   YG+ + G+CK G    A  +L ++  N + P  V Y+T+IDG C   ++ 
Sbjct: 155 AMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVN 214

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF    EMV +GI P   TY+ LI       ++ +A D+  +M  + I PD  T+NIL+
Sbjct: 215 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILV 274

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKG 180
           +G+C+ G  K+  ++   M+ +GI+P ++TY SL+  + L K+    +A  +      +G
Sbjct: 275 DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVN--KAKSILYTMSQRG 332

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N LIDG C    ++ A +L KEM    + PD VTYN+L+ G C+ GK+  A 
Sbjct: 333 VNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYAL 392

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L+D+M  RG+ PD I       TY++++  LCKN + D A  LL ++  +GI P+  TY
Sbjct: 393 KLVDEMHDRGVPPDII-------TYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTY 445

Query: 301 FSLIEGIASVDKAAESSN 318
             LI+G+    +  ++ N
Sbjct: 446 TILIDGLCKGGRLEDAHN 463



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 161/288 (55%), Gaps = 8/288 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PD YT+   V G CK+G+++E   +   M + G+ P  VTY +L+DGYC    +  A 
Sbjct: 263 IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAK 322

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S    M ++G+ P   +YN+LI      +K+ EA ++ KEM  K I+PD +TYN LI+G 
Sbjct: 323 SILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGL 382

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G    A  L DEM  +G+ P ++TY+S++  L K +++ +A  L      +G+ P++
Sbjct: 383 CKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNM 442

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +  LIDG C  G +E A ++ +++     +    TY  ++HG C +G  +EA  LL +
Sbjct: 443 YTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSK 502

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           MK     PD +       TY  +I+ L    E D AE+ LREM+++G+
Sbjct: 503 MKDNSCIPDAV-------TYEIIIRSLFDKDENDKAEK-LREMITRGL 542



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 168/312 (53%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ P+  TY + +SG    G+L++A  +  +M    + P   T+N L+DG+C  G 
Sbjct: 223 MVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 282

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++   +    M+KQGI P   TY  L+    + +++ +A  +L  M ++G+ PD  +YNI
Sbjct: 283 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNI 342

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+     +A +L  EM HK I P ++TY SLI  L K  ++  A +L +    +G
Sbjct: 343 LIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 402

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ +++++D  C N  +++A +LL ++    + P+  TY  L+ G C+ G++E+A 
Sbjct: 403 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAH 462

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +  +G       +N T  TY  +I G C     D A  LL +M      PD  TY
Sbjct: 463 NIFEDLLVKG-------YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTY 515

Query: 301 FSLIEGIASVDK 312
             +I  +   D+
Sbjct: 516 EIIIRSLFDKDE 527



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 131/248 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P+  TY S + G C    + +A  +L  M + G+ P   +YN LIDG+C    
Sbjct: 293 MMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKK 352

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  + I+P   TYN LI  L    K+  A  ++ EM ++G+ PD ITY+ 
Sbjct: 353 VDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSS 412

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C+     KA +L  ++  +GI+P M TYT LI  L K  R+ +A  +FE+ L KG
Sbjct: 413 ILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               +  +  +I G C  G  + A +LL +M      PD VTY  ++     + + ++A 
Sbjct: 473 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAE 532

Query: 241 RLLDQMKR 248
           +L + + R
Sbjct: 533 KLREMITR 540



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 26/221 (11%)

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           +V+A  +   +  +   P +I +N ++    +  +     SL  +M  +GI P +  +  
Sbjct: 57  VVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQ- 115

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
                          QL       G  P+ + F  LI G C  G I +A      +  M 
Sbjct: 116 ------------HPHQLM------GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMG 157

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
              D+V Y TL+HG C+ G   E R  LD ++R     D     P  + Y+ +I G+CK+
Sbjct: 158 FQLDQVGYGTLIHGLCKVG---ETRAALDLLRRV----DGNLVQPNVVMYSTIIDGMCKD 210

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +  + A +L  EMVSKGI+P+  TY +LI G  +V +  ++
Sbjct: 211 KHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDA 251


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 176/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  TY   +   CK    ++A ++L++M + G  P  VTYN +++G C +G 
Sbjct: 192 MFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGR 251

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F   +   G  P   +YN+++  L    +  +A+ +++EM  KG  P+ +T+N+
Sbjct: 252 VEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNM 311

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR G  + A  + ++M   G  P  L+Y  L+    KQ ++ +A +  E  +++G
Sbjct: 312 LISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG 371

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N L+   C NG ++ A  LL ++      P  ++YNT++ G  + GK +EA 
Sbjct: 372 CYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEAL 431

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LLD+M  +G++PD I+++                            PT   YNA++ GL
Sbjct: 432 ELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGL 491

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK +E   A +L   M+S G  P+++TY  L+EG+A
Sbjct: 492 CKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLA 527



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD   Y + V+G C  G+L+ A R++  M    + P A TYNTLI G C +G    A + 
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAV 188

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            ++M ++G +P   TY +L+          +A  +L EM +KG  PD +TYN+++NG C+
Sbjct: 189 LEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQ 248

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A      +   G +P  ++Y  ++  L    R  +A++L E    KG  P++V 
Sbjct: 249 EGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVT 308

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FN LI   C  G +E A  +L++M +    P+ ++YN L+H  C+Q K+ +A   ++ M 
Sbjct: 309 FNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMV 368

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            RG  PD +S       YN L+  LC+N E D+A ELL ++  KG +P   +Y ++I+G+
Sbjct: 369 SRGCYPDIVS-------YNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGL 421

Query: 308 ASVDKAAES 316
               K  E+
Sbjct: 422 TKAGKTKEA 430



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 164/311 (52%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+PD+YTY + + G+C  GR   A  +LE M   G +P  VTY  L++  C +   + A 
Sbjct: 162 VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAM 221

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM  +G  P   TYN++++ +  E ++ +A + LK +   G  P++++YNI++ G 
Sbjct: 222 KLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGL 281

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
                 + A  L +EM HKG  P ++T+  LI  L ++  +  A ++ E     G  P+ 
Sbjct: 282 FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNS 341

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N L+   C    I +A   ++ M     +PD V+YNTL+   CR G+V+ A  LL Q
Sbjct: 342 LSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQ 401

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +K +G  P  IS       YN +I GL K  +   A ELL EM SKG+ PD  TY ++  
Sbjct: 402 LKDKGCSPVLIS-------YNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIAS 454

Query: 306 GIASVDKAAES 316
           G+   D+  E+
Sbjct: 455 GLCREDRIEEA 465



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +P++ +Y   + G+    R E+A +++E+M   G  P  VT+N LI   C +G 
Sbjct: 262 LPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGL 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    ++M + G  P + +YN L+H    ++K+ +A + ++ M  +G  PD ++YN 
Sbjct: 322 VEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNT 381

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   CR G    A  L  ++  KG  P +++Y ++I  L+K  +  EA +L +   +KG
Sbjct: 382 LLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKG 441

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ +  G C    IE A     ++  M + P    YN ++ G C++ +   A 
Sbjct: 442 LQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAI 501

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            L   M   G  P+         TY  L++GL        A EL  ++ S+G+ 
Sbjct: 502 DLFAYMISSGCMPNES-------TYTILVEGLAYEGLVKEARELFAQLCSRGVV 548



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 144/333 (43%), Gaps = 74/333 (22%)

Query: 14  GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73
            + +  +C  GR  +A R+L         P  + YN ++ GYC  G L+ A         
Sbjct: 108 AALIKKLCASGRTADARRVLAASG-----PDVMVYNAMVAGYCGAGQLDAA--------- 153

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
                               R++V   DM  E       PD+ TYN LI G C  G    
Sbjct: 154 --------------------RRLVA--DMPVE-------PDAYTYNTLIRGLCGRGRTSN 184

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A ++ ++M  +G  P ++TYT L+    K++   +A +L +    KG  PDIV +N +++
Sbjct: 185 ALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLN 244

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
           G C  G +E A   LK +      P+ V+YN ++ G     + E+A +L+++M  +G  P
Sbjct: 245 GICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPP 304

Query: 254 DHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELL 285
           + ++FN                            P  L+YN L+   CK ++   A E +
Sbjct: 305 NVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFV 364

Query: 286 REMVSKGITPDDNTYFSLIEGIA---SVDKAAE 315
             MVS+G  PD  +Y +L+  +     VD A E
Sbjct: 365 ELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIE 397


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TY S +  +CK GR  EA +M + M + GL P   TY TL+ GY  KG 
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++LI     + K+ +A  +  +M ++G+ PD++TY  
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G  + A    ++MI + + P  + Y SLI  L   ++  +A +L    L +G
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D + FN++ID HC  G +  +  L   M R+ V P+ +TY+TL+ G C  GK++EA 
Sbjct: 475 ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEAT 534

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TYN LI G CK    + A  L REM S G++PD  TY
Sbjct: 535 KLLASMVSVGMKPDCV-------TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 588 NIILQGLFQTRRTAAA 603



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 183/346 (52%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P+ ++Y   + G+C E R +EA  +L+ M ++G    P  V+Y T+I+G+  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G+L+ A+    EM+ +GI+P   TYN +I  L   + M +A ++L  M + G++P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++GYC  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P+I  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +QGKV++
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ 392

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  +  +M+++G+ PD +++                            +P  + YN+LI 
Sbjct: 393 AMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIH 452

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            LC   + D A+EL+ EM+ +GI  D   + S+I+      +  ES
Sbjct: 453 SLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIES 498



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 168/344 (48%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TY S ++ +CK   +++A  +L  M +NG++P   TYN+++ GYC+ G 
Sbjct: 225 MLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQ 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  M   M ++G+ P+  TY  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +   L D M+  GI P    ++ LI   +KQ ++ +A  +F     +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +  +I   C +G +E A    ++M   ++ P  + YN+L+H  C   K ++A+
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M  RGI  D I FN                            P  +TY+ LI G 
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C   + D A +LL  MVS G+ PD  TY +LI G   + +  ++
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ Y +   +    K+G++++A  +  +M++ GL P  VTY T+I   C  G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ + + P    YN LIH L +  K  +A +++ EM ++GI  D+I +N 
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L  + ++ G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD V +N LI+G+C    +E A  L +EM+   V PD +TYN ++ G  +  +   A+
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +   G + +         TYN ++ GLCKN   D A  + + +    +  +  T+
Sbjct: 605 ELYVGITESGTQLE-------LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657

Query: 301 FSLIEGIASVDKAAESSN 318
             +I  +  V +  E+ +
Sbjct: 658 NIMIGALLKVGRNDEAKD 675



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 16/317 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P+  TYG  +   C  GRL+     L  + + G    A+ +  L+ G C   + +  M
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNIL 121
               R  M + G +P   +YN+L+  L  E +  EA ++L+ M + G    PD ++Y  +
Sbjct: 147 DIVLR-RMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+ + G+  KA+  + EM+ +GI P ++TY S+I  L K   M +A ++  + +  G+
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P+   +N+++ G+C++G  + A   LK+M    V PD VTYN+LM   C+ G+  EAR+
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNT 299
           + D M +RG+KP+         TY  L+QG     +G L E   LL  MV  GI P+   
Sbjct: 326 MFDSMTKRGLKPEIT-------TYGTLLQGYA--TKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 YFSLIEGIASVDKAAES 316
           +  LI   A   K  ++
Sbjct: 377 FSILICAYAKQGKVDQA 393



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 35/289 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ +G+ PD+ TYG+ +  +CK GR+E+A R  EQM +  L P  + YN+LI        
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      D +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYST 519

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ PD +TYN LINGYC+    + A  L  EM   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            + + +    +  +  T+N ++    + G+ +EA+ L   +   G+ PD
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 119/250 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D+  + S +   CKEGR+ E+ ++ + M   G+ P  +TY+TLIDGYC  G 
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGK 529

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV  G+ P   TYN LI+      +M +A  + +EM   G+ PD ITYNI
Sbjct: 530 MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNI 589

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G  +      A  L+  +   G Q  + TY  ++  L K N   EA ++F+N     
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTD 649

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   FN +I      G  + A  L   +    + PD  TY+ +      QG +EE  
Sbjct: 650 LQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELD 709

Query: 241 RLLDQMKRRG 250
            L   M+  G
Sbjct: 710 DLFLSMEENG 719



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 114/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  TY + + G C  G+++EA+++L  M   G+ P  VTYNTLI+GYC    +E A
Sbjct: 509 GVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + E G   +  TYNI+++G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  R  EA  LF    A G++PD
Sbjct: 629 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  ++ + +     G +E    L   M+      +    N+++    ++G +  A
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + P+  TY ILI   C  G     F+    +I KG +   + +T L+  L    R 
Sbjct: 83  GADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRT 142

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTY 223
            +A D +       G +P++  +N L+ G C     + A  LL+ M  D     PD V+Y
Sbjct: 143 SDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSY 202

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
            T+++G  ++G +++A     +M  RGI P+ +       TYN++I  LCK Q  D A E
Sbjct: 203 TTVINGFFKEGDLDKAYGTYHEMLDRGILPNVV-------TYNSIIAALCKAQAMDKAME 255

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +L  MV  G+ P+  TY S++ G  S  +  E+
Sbjct: 256 VLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD YT+ + V+G+CK G ++ A  +++ M + G  P   TYN++I G C  G ++ A
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F D+M+ +   P   TYN LI  L  E ++ EA ++ + +  KGI+PD  T+N LI G
Sbjct: 350 VEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C   N + A  L +EM  KG +P   TY  LI  L  + ++ EA  + +     G    
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +N LIDG C    I  A  +  EM+   V  + VTYNTL+ G C+  +VE+A +L+D
Sbjct: 470 VITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMD 529

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G KPD       + TYN+L+   C+  +   A ++++ M S G  PD  TY +LI
Sbjct: 530 QMIMEGQKPD-------KFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582

Query: 305 EGIASVDKAAESS 317
            G+    +   +S
Sbjct: 583 SGLCKAGRVEVAS 595



 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 173/318 (54%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD  T+ + + G  +EG L+ A R+ EQM E G   + V+ N ++ G+C +G 
Sbjct: 215 MPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGR 274

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +E A +F  EM  Q G  P   T+N L++ L     +  A +++  M ++G  PD  TYN
Sbjct: 275 VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYN 334

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+ G  K+A    D+MI +   P  +TY +LI  L K+N++ EA +L     +K
Sbjct: 335 SVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 394

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+LPD+  FN+LI G C   N   A  L +EM      PDE TYN L+   C +GK++EA
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA 454

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L QM+  G     I       TYN LI G CK  +   AEE+  EM   G++ +  T
Sbjct: 455 LNMLKQMELSGCARSVI-------TYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVT 507

Query: 300 YFSLIEGIASVDKAAESS 317
           Y +LI+G+    +  ++S
Sbjct: 508 YNTLIDGLCKSRRVEDAS 525



 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD YTY S +SG+CK G ++EA   L+QM      P  VTYNTLI   C +  
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      +  +GI+P   T+N LI  L + R    A ++ +EM  KG  PD  TYN+
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G   +A ++  +M   G   +++TY +LI    K N++ EA+++F+     G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHG 500

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V +N LIDG C +  +E A  L+ +M      PD+ TYN+L+   CR G +++A 
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAA 560

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++  M   G +PD +       TY  LI GLCK    ++A +LLR +  KGI    + Y
Sbjct: 561 DIVQAMTSNGCEPDIV-------TYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAY 613

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+G+    K  E+ N
Sbjct: 614 NPVIQGLFRKRKTTEAIN 631



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 8/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R   P++ TY + +S +CKE ++EEA+ +   +   G++P   T+N+LI G C   N
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A    +EM  +G  P   TYN+LI  L  + K+ EA +MLK+M   G     ITYN 
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+    ++A  + DEM   G+    +TY +LI  L K  R+ +A QL +  + +G
Sbjct: 476 LIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEG 535

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +N+L+   C  G+I++A  +++ M      PD VTY TL+ G C+ G+VE A 
Sbjct: 536 QKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-ITPDDNT 299
           +LL  ++ +G     I+  P    YN +IQGL + ++   A  L REM+ +    PD  +
Sbjct: 596 KLLRSIQMKG-----IALTPH--AYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVS 648

Query: 300 YFSLIEGIAS 309
           Y  +  G+ +
Sbjct: 649 YRIVFRGLCN 658



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 142/315 (45%), Gaps = 40/315 (12%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K     P+   Y   +  + + G  ++  ++LE MK +G       +  LI+ Y      
Sbjct: 75  KKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQ---- 130

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
              F  +DE++             ++H ++        DD        G+ PD+  YN +
Sbjct: 131 ---FELQDEILG------------VVHWMI--------DDF-------GLKPDTHFYNRM 160

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +N      N K     H +M   GI+P + T+  LI  L + +++  A  + E+  + G+
Sbjct: 161 LNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGL 220

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD   F  ++ G+   G+++ A  + ++M         V+ N ++HG C++G+VE+A  
Sbjct: 221 VPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALN 280

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
            + +M  +        F P + T+N L+ GLCK      A E++  M+ +G  PD  TY 
Sbjct: 281 FIQEMSNQD------GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYN 334

Query: 302 SLIEGIASVDKAAES 316
           S+I G+  + +  E+
Sbjct: 335 SVISGLCKLGEVKEA 349



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 2/126 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +PD  TYG+ +SG+CK GR+E AS++L  ++  G+  T   YN +I G   K  
Sbjct: 566 MTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRK 625

Query: 61  LEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITY 118
              A +   EM++Q    P A +Y ++   L      + EA D L E+ EKG VP+  + 
Sbjct: 626 TTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSL 685

Query: 119 NILING 124
            +L  G
Sbjct: 686 YMLAEG 691



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 7/139 (5%)

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD   +N +++      N++       +M    + PD  T+N L+   CR  ++  A
Sbjct: 149 GLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPA 208

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L+ M   G+ PD         T+  ++QG  +  + D A  +  +MV  G +  + +
Sbjct: 209 ILMLEDMPSYGLVPDE-------KTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVS 261

Query: 300 YFSLIEGIASVDKAAESSN 318
              ++ G     +  ++ N
Sbjct: 262 VNVIVHGFCKEGRVEDALN 280


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 173/310 (55%), Gaps = 9/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+    +P+S+TY   + G+CKEGR+EEA R+L +MK  GL    V Y+TLI G+C+KG 
Sbjct: 36  MEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGC 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+   +  DEM+++GI P    Y+ LI+    +    EA  +L  M E+GI PD  TY  
Sbjct: 96  LDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTC 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C+ G A+KA  L D M  KG +P+ +TY  LI  L K+  + +A ++FE  L KG
Sbjct: 156 MIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG 215

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVEE 238
              ++V +N LI G C NG ++ A  L   +  D   V PD +T+NT++ G C++G++++
Sbjct: 216 KRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDK 275

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  + D M  RG      SF     T + LI    K+   D A EL + +   G+ P   
Sbjct: 276 AVEIYDTMIERG------SFG-NLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSST 328

Query: 299 TYFSLIEGIA 308
           TY  +I+G  
Sbjct: 329 TYSVMIDGFC 338



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 165/321 (51%), Gaps = 9/321 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+QPD YTY   + G+CK+GR  +A  + + M E G  P+ VTYN LI+G C +G 
Sbjct: 141 MTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGC 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITY 118
           +  AF   + M+++G      +YN LI  L    K+ EA  +   + E G  + PD IT+
Sbjct: 201 IGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITF 260

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +I G C+ G   KA  ++D MI +G    + T   LI    K   + +A +L++    
Sbjct: 261 NTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHK 320

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G++P    ++ +IDG C    +  A  L   M    + P    YNTLM   C++  +E+
Sbjct: 321 LGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQ 380

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           ARRL  +MK    +PD ISFN        +I G  K  +   A+ELL +M   G+TPD  
Sbjct: 381 ARRLFQEMKESNCEPDTISFN-------IMIDGTLKAGDIHSAKELLNDMQQMGLTPDAY 433

Query: 299 TYFSLIEGIASVDKAAESSNS 319
           TY S I  ++ + +  E+  +
Sbjct: 434 TYSSFINRLSKLGQMEEAKGA 454



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 162/299 (54%), Gaps = 11/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M  +G + +  +Y + + G+C  G+L+EA ++   + E+G  + P  +T+NT+I G C +
Sbjct: 211 MLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKE 270

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L+ A    D M+++G      T ++LI E +    + +A ++ K + + G+VP S TY
Sbjct: 271 GRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTY 330

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +++I+G+C+      A  L   M   G+ PT+  Y +L+  L K++ + +A +LF+    
Sbjct: 331 SVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKE 390

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
               PD + FN +IDG    G+I  A  LL +M +M + PD  TY++ ++   + G++EE
Sbjct: 391 SNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEE 450

Query: 239 ARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           A+   D M   GI PD H+        Y++LI+G   N E +    LLR+M   G+  D
Sbjct: 451 AKGAFDSMIASGITPDNHV--------YDSLIKGFGLNDEIEEVINLLRQMADMGVILD 501



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 35/265 (13%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG------------------------- 40
           V+PD  T+ + + G+CKEGRL++A  + + M E G                         
Sbjct: 253 VEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAM 312

Query: 41  ----------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
                     LVP++ TY+ +IDG+C    L  A      M   G+ PT   YN L+  L
Sbjct: 313 ELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASL 372

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
             E  + +A  + +EM E    PD+I++NI+I+G  + G+   A  L ++M   G+ P  
Sbjct: 373 CKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDA 432

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            TY+S I  LSK  +M EA   F++ +A G+ PD  ++++LI G   N  IE   +LL++
Sbjct: 433 YTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQ 492

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGK 235
           M  M V  D    N+++   C   +
Sbjct: 493 MADMGVILDLEITNSILTFLCNSAE 517



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 28/164 (17%)

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPDIV +N +I+G C    +E+A  LL EM+     P+  TY  LM G C++G+VEEA 
Sbjct: 6   ILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAM 65

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           RLL +MKR+G++ D + ++                            P  + Y+ LI G 
Sbjct: 66  RLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGF 125

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK      A  +L  M  +GI PD  TY  +I G+    +A ++
Sbjct: 126 CKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKA 169



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+ P  + Y + ++ +CKE  LE+A R+ ++MKE+   P  +++N +IDG    G+
Sbjct: 353 MKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGD 412

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    ++M + G+ P A TY+  I+ L    +M EA      M   GI PD+  Y+ 
Sbjct: 413 IHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDS 472

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           LI G+      ++  +L  +M   G+   +    S++  L      +   +L  NF
Sbjct: 473 LIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNF 528



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MKR  I PD +S       YN +I GLCK +  + A +LL EM      P+  TY  L++
Sbjct: 1   MKRINILPDIVS-------YNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMD 53

Query: 306 GIASVDKAAES 316
           G+    +  E+
Sbjct: 54  GLCKEGRVEEA 64


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 181/314 (57%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + ++G+C E ++ EA  ++ +M ENG  P  VTYN++++G C  G+  +A
Sbjct: 130 GYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLA 189

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M ++ +     TY+ +I  L  +  +  A  + KEM  KGI    +TYN L+ G
Sbjct: 190 LDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGG 249

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G       L  +M  + I P ++T+  LI V  K+ ++ EA++L++  + KG+ P+
Sbjct: 250 LCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPN 309

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +N+L+DG+C    +  A ++L  M R    PD VT+ +L+ G C+  +V+E  +L  
Sbjct: 310 TITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFR 369

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++ +RG+  + +       TY+ L+QG C++ + ++AEEL +EMVS G+ PD  TY  L+
Sbjct: 370 KISKRGLVANTV-------TYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILL 422

Query: 305 EGIA---SVDKAAE 315
           +G+     ++KA E
Sbjct: 423 DGLCDNGKLEKALE 436



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 170/306 (55%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++    TY S V G+CK G+  +  ++L+ M    ++P  +T+N LID +  +G 
Sbjct: 231 METKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGK 290

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM+ +GI P   TYN L+    M+ ++ EA++ML  M      PD +T+  
Sbjct: 291 LQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTS 350

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC+     +   L  ++  +G+    +TY+ L+    +  ++  A++LF+  ++ G
Sbjct: 351 LIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLG 410

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ +  L+DG C NG +E+A  + +++ + K++ D V Y  ++ G C+ GKVE+A 
Sbjct: 411 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAW 470

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+        +TY  +I GLCK      A  LLR+M   G  P+D TY
Sbjct: 471 NLFCSLPCKGVKPNV-------MTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTY 523

Query: 301 FSLIEG 306
            +LI  
Sbjct: 524 NTLIRA 529



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 167/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TY S V+G+CK G    A  +L +M E  +     TY+T+ID  C  G 
Sbjct: 161 MVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGC 220

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S   EM  +GI  +  TYN L+  L    K  +   +LK+M  + I+P+ IT+N+
Sbjct: 221 IDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNV 280

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G  ++A  L+ EMI KGI P  +TY SL+     QNR+ EA+ + +  +   
Sbjct: 281 LIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN 340

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV F +LI G+C    ++    L +++ +  +  + VTY+ L+ G C+ GK+E A 
Sbjct: 341 CSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAE 400

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ PD        +TY  L+ GLC N + + A E+  ++    +  D   Y
Sbjct: 401 ELFQEMVSLGVLPDV-------MTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMY 453

Query: 301 FSLIEGIASVDKAAESSN 318
             +IEG+    K  ++ N
Sbjct: 454 TIIIEGMCKGGKVEDAWN 471



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 142/258 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P++ TY S + G C + RL EA+ ML+ M  N   P  VT+ +LI GYC    
Sbjct: 301 MITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKR 360

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       ++ K+G++    TY++L+       K+  A+++ +EM   G++PD +TY I
Sbjct: 361 VDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGI 420

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + +++    +   ++ YT +I  + K  ++ +A  LF +   KG
Sbjct: 421 LLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKG 480

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +  +I G C  G++  A  LL++M+     P++ TYNTL+    R G +  + 
Sbjct: 481 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASA 540

Query: 241 RLLDQMKRRGIKPDHISF 258
           +L+++MK  G   D  S 
Sbjct: 541 KLIEEMKSCGFSADASSI 558



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 152/314 (48%), Gaps = 7/314 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+      YG  +     + + ++A  + ++M  +  +P+ V ++    G  +     + 
Sbjct: 25  GISDGRVCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLV 84

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F  +M   GI     T N++I+      K   A  +L ++ + G  PD+ T+N LING
Sbjct: 85  LDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLING 144

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C      +A  L   M+  G QP ++TY S++  + K      A  L      + +  D
Sbjct: 145 LCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKAD 204

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  ++ +ID  C +G I+ A SL KEM+   +    VTYN+L+ G C+ GK  +  +LL 
Sbjct: 205 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLK 264

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  R I P+ I       T+N LI    K  +   A EL +EM++KGI+P+  TY SL+
Sbjct: 265 DMTSRKIIPNVI-------TFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLM 317

Query: 305 EGIASVDKAAESSN 318
           +G    ++ +E++N
Sbjct: 318 DGYCMQNRLSEANN 331



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 97/193 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  RG+  ++ TY   V G C+ G+LE A  + ++M   G++P  +TY  L+DG C+ G 
Sbjct: 371 ISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGK 430

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    +++ K  +      Y ++I  +    K+ +A ++   +  KG+ P+ +TY +
Sbjct: 431 LEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 490

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G+  +A  L  +M   G +P   TY +LI    +   +  + +L E   + G
Sbjct: 491 MISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 550

Query: 181 MLPDIVMFNALID 193
              D      +ID
Sbjct: 551 FSADASSIKMVID 563



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 85/161 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV PD  TYG  + G+C  G+LE+A  + E ++++ +    V Y  +I+G C  G 
Sbjct: 406 MVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGK 465

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A++    +  +G+ P   TY ++I  L  +  + EA+ +L++M E G  P+  TYN 
Sbjct: 466 VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNT 525

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           LI  + R G+   +  L +EM   G      +   +I +LS
Sbjct: 526 LIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLS 566


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 165/303 (54%), Gaps = 7/303 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    + PD   + S V G CK G    A      M E G++P+  T N +ID +C +G 
Sbjct: 456 MVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGR 515

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A +  +EM  QGI P   TYN +I+ L  ERK   A ++   M ++ ++P  + Y+ 
Sbjct: 516 VEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYST 575

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ +  N++KA  L+  M+  G+ P M+ YT LI +L  ++RM EA  LF+     G
Sbjct: 576 LIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENG 635

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD + + ++I G C  G++ +A++L  EM +    P  VTY +L+ G C+  +++ A 
Sbjct: 636 MTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIAD 695

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D+MKR+GI PD +       TYN LI    +    D A E+L EM   G+ PD  TY
Sbjct: 696 MLIDEMKRKGITPDVV-------TYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTY 748

Query: 301 FSL 303
             L
Sbjct: 749 MML 751



 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 184/384 (47%), Gaps = 66/384 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTL--------- 51
           MKS G+ PD YTY   + G CK+G +E+   ++E+MK + + P+ V+Y++L         
Sbjct: 351 MKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRL 410

Query: 52  --------------------------IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                     I G+C +G+L+ A    +EMV+  + P  S +  
Sbjct: 411 SDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFES 470

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+H        V A +    M E GI+P   T N++I+ +CR G  ++A +L +EM  +G
Sbjct: 471 LVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQG 530

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P + TY ++I  L K+ +   A +LF   L + +LP +V+++ LIDG     N ++A 
Sbjct: 531 IFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKAL 590

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
            L   M ++ V PD V Y  L++  C + ++ EA  L  +M   G+ PD IS+       
Sbjct: 591 MLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGF 650

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 PT +TY +L+ G CK    D+A+ L+ EM  KGITPD 
Sbjct: 651 CRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDV 710

Query: 298 NTYFSLIEG---IASVDKAAESSN 318
            TY  LI       ++DKA E  N
Sbjct: 711 VTYNVLIAAHRRRGNLDKALEMLN 734



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 153/308 (49%), Gaps = 7/308 (2%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           Y Y + + G+CK+G L+EA ++LE+MK  G+ P   TY+ LI G+C +G++E      +E
Sbjct: 326 YCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEE 385

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M    + P+  +Y+ L H L  +R    + D+ +++G  G   D   Y+ILI G+C  G+
Sbjct: 386 MKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGD 445

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A  L +EM+   + P    + SL+    K    + A + F   L  G+LP I   N 
Sbjct: 446 LDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNV 505

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +ID HC  G +E A +L+ EM    + P+  TYN +++  C++ K E A  L   M +R 
Sbjct: 506 IIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRN 565

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           + P  +        Y+ LI G  K      A  L   M+  G+TPD   Y  LI  +   
Sbjct: 566 VLPSVV-------VYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHR 618

Query: 311 DKAAESSN 318
            +  E+ N
Sbjct: 619 SRMCEAYN 626



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 179/349 (51%), Gaps = 48/349 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK----EGRLE--EASRMLEQMKENGLVPTAVTYNTLIDG 54
           MKS G  P+ +TY   ++  CK    E  ++  +A+ +LE+M+ NG  PT VTY+T I G
Sbjct: 240 MKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYG 299

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
            C  G +E A  F   ++    +     YN +IH L  + ++ EA  +L+EM   GI PD
Sbjct: 300 LCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPD 359

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             TY+ILI+G+C+ G+ +K   L +EM +  ++P++++Y+SL   L K+     +  +F 
Sbjct: 360 VYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFR 419

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG----- 229
           +  A G   D   ++ LI G C  G+++ A  L++EM R  + PD   + +L+HG     
Sbjct: 420 DLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMG 479

Query: 230 ------------------------------RCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
                                          CR+G+VEEA  L+++M+ +GI P+     
Sbjct: 480 LWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPN----- 534

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
               TYNA+I  LCK ++ + A EL   M+ + + P    Y +LI+G A
Sbjct: 535 --LFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFA 581



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 136/272 (50%), Gaps = 15/272 (5%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           + + ++ LI  +     LE A     +  K G+  +  + N L+  L    +      + 
Sbjct: 178 SVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLF 237

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGN-------AKKAFSLHDEMIHKGIQPTMLTYTSL 156
           +EM   G  P+  TY I++N YC+ GN        ++A  + +EM   G  PT++TY++ 
Sbjct: 238 EEMKSTGPPPNVFTYTIMMNFYCK-GNFGEADIDTRQATEILEEMERNGESPTVVTYSTY 296

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I+ L +   +  A     + ++   L ++  +NA+I G C  G ++ A  +L+EM    +
Sbjct: 297 IYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGI 356

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD  TY+ L+HG C+QG VE+   L+++MK   ++P  +S       Y++L  GLCK +
Sbjct: 357 SPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVS-------YSSLFHGLCKKR 409

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             D++ ++ R++ + G   D   Y  LI+G  
Sbjct: 410 LSDISLDIFRDLGAAGYKYDQTAYSILIKGFC 441



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 15/290 (5%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE A  +  Q K+ GL  +  + N L+         E   S  +EM   G  P   TY +
Sbjct: 195 LENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTI 254

Query: 86  LIHELLMERKMVEAD-------DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
           +++    +    EAD       ++L+EM   G  P  +TY+  I G CR G  + A    
Sbjct: 255 MMN-FYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFV 313

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
             +I       +  Y ++I  L K+  + EA ++ E   + G+ PD+  ++ LI G C  
Sbjct: 314 RSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQ 373

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
           G++E+   L++EM    + P  V+Y++L HG C++   + +  +   +   G K D  + 
Sbjct: 374 GDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTA- 432

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                 Y+ LI+G C   + D A +L+ EMV   + PD + + SL+ G  
Sbjct: 433 ------YSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFC 476



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 92/159 (57%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV PD   Y   ++ +C   R+ EA  + ++M ENG+ P  ++Y ++I G+C  G++  A
Sbjct: 600 GVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKA 659

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           ++  +EM+++G +PT  TY  L+       ++  AD ++ EM  KGI PD +TYN+LI  
Sbjct: 660 WALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAA 719

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           + R GN  KA  + +EM   G+ P  +TY  L ++L  +
Sbjct: 720 HRRRGNLDKALEMLNEMKENGVLPDHMTYMMLEWLLKAK 758


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 174/307 (56%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G   ++ TY   + G+C  G +E+A  + E+M + G +PT VTYNTLI+GY  KGN
Sbjct: 441 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGN 500

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M + G  P   TYN L+       K+  A    +EM E G+ P+ ++Y  
Sbjct: 501 VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTT 560

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G    A SL + M   G  P + +Y ++I  LSK+NR  EA+++ +    +G
Sbjct: 561 LIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQG 620

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+++ +  LIDG C NG  + AF +  +M++ K  P+  TY++L++G C++GK +EA 
Sbjct: 621 LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE 680

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M+R+G+ PD +       T+ +LI G       D A  LLR MV  G  P+  TY
Sbjct: 681 ILLKEMERKGLAPDEV-------TFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTY 733

Query: 301 FSLIEGI 307
             L++G+
Sbjct: 734 SVLLKGL 740



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 175/340 (51%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG +P+  TY + +SG+ + G+LE A  +  +M + GLVP  VTYN LI+  C  G 
Sbjct: 371 MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 430

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M   G +    TYN +I  L +   + +A  + ++M + G +P  +TYN 
Sbjct: 431 FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 490

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY   GN   A  L D M   G +P   TY  L+   SK  ++  A   F+  +  G
Sbjct: 491 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 550

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  LIDGH  +G ++ A SLL+ M+ M  +P+  +YN +++G  ++ +  EA 
Sbjct: 551 LNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAE 610

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           ++ D+M  +G+ P+ I++                             P   TY++LI GL
Sbjct: 611 KICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 670

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           C+  + D AE LL+EM  KG+ PD+ T+ SLI+G   + +
Sbjct: 671 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGR 710



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 179/341 (52%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+QP   T+ + ++ + K+G++ EA  +L Q+ +  L P   TY +LI G+C   N
Sbjct: 231 MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN 290

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++AF   D MVK+G  P + TY+ LI+ L  E ++ EA DML+EM EKGI P   TY +
Sbjct: 291 LDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTL 350

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C   + ++A  L   M  +G +P + TYT+LI  LS+  ++  A  L+   L +G
Sbjct: 351 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG 410

Query: 181 MLPDIVMFNALI-------------------DGH----------------CTNGNIERAF 205
           ++P+ V +NALI                   +GH                C  G+IE+A 
Sbjct: 411 LVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM 470

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L ++M +M   P  VTYNTL++G   +G V  A RLLD MK  G +PD         TY
Sbjct: 471 VLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPD-------EWTY 523

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           N L+ G  K  + + A    +EMV  G+ P+  +Y +LI+G
Sbjct: 524 NELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDG 564



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 158/316 (50%), Gaps = 18/316 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+  +Y + ++G+ KE R  EA ++ ++M E GL+P  +TY TLIDG C  G 
Sbjct: 581 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGR 640

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    +M K+  +P   TY+ LI+ L  E K  EA+ +LKEM  KG+ PD +T+  
Sbjct: 641 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTS 700

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+   G    AF L   M+  G +P   TY+ L+  L K+  ++E     ++     
Sbjct: 701 LIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYS 760

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P           H  + N E   +LL  M  +   P   TY+TL+ G CR+G+  EA 
Sbjct: 761 FSP-----------HEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAE 809

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L+  MK RG  PD       R  Y +L+   CKN E D A ++   + +KG     + Y
Sbjct: 810 QLVKDMKERGFCPD-------REIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIY 862

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +    +  E+
Sbjct: 863 RALICALCKAGQVEEA 878



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 24/278 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R   P+ YTY S + G+C+EG+ +EA  +L++M+  GL P  VT+ +LIDG+   G 
Sbjct: 651 MEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGR 710

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL-----LMERKMV------------EAD--- 100
           ++ AF     MV  G  P   TY++L+  L     L+E K+             E D   
Sbjct: 711 IDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNF 770

Query: 101 ----DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
               ++L  M E G  P   TY+ L++G CR G   +A  L  +M  +G  P    Y SL
Sbjct: 771 EIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSL 830

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           +    K   +  A ++F +  AKG    + ++ ALI   C  G +E A +L   M   + 
Sbjct: 831 LIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEW 890

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           + DE+ +  L+ G  ++G+++   +LL  M+ +   P+
Sbjct: 891 NADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPN 928



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 134/256 (52%), Gaps = 8/256 (3%)

Query: 58  KGNLEMAFSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           K N+    S  + +V+  +  P      L+I     E ++    D L E+   G      
Sbjct: 147 KHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLY 206

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           + N L+    +    + A +L+ +M++ GIQP++LT+ +LI +LSK+ ++ EA+ +    
Sbjct: 207 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 266

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
               + PD+  + +LI GHC N N++ AF +   M +    P+ VTY+TL++G C +G+V
Sbjct: 267 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 326

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +EA  +L++M  +GI+       PT  TY   I  LC  +  + A EL+  M  +G  P+
Sbjct: 327 DEALDMLEEMIEKGIE-------PTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPN 379

Query: 297 DNTYFSLIEGIASVDK 312
             TY +LI G++ + K
Sbjct: 380 VQTYTALISGLSRLGK 395



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 140/293 (47%), Gaps = 11/293 (3%)

Query: 20  MCKEGRLEEASR----MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
           M K  R EE  R     L ++   G   +  + NTL+        +E A +   +M+  G
Sbjct: 176 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 235

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I P+  T+N LI+ L  + K+ EA+ +L ++ +  + PD  TY  LI G+CR  N   AF
Sbjct: 236 IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAF 295

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            + D M+ +G  P  +TY++LI  L  + R+ EA  + E  + KG+ P +  +   I   
Sbjct: 296 GVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 355

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C   + E A  L+  M +    P+  TY  L+ G  R GK+E A  L  +M + G+ P+ 
Sbjct: 356 CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNT 415

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +       TYNALI  LC       A ++   M   G   +  TY  +I+G+ 
Sbjct: 416 V-------TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLC 461



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 120/271 (44%), Gaps = 24/271 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG- 59
           M+ +G+ PD  T+ S + G    GR++ A  +L +M + G  P   TY+ L+ G   +  
Sbjct: 686 MERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECL 745

Query: 60  -----------------------NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
                                  N E+  +    M + G  PT  TY+ L+  L  + + 
Sbjct: 746 LLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRF 805

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
            EA+ ++K+M E+G  PD   Y  L+  +C+      A  +   +  KG Q  +  Y +L
Sbjct: 806 YEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRAL 865

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I  L K  ++ EA  LF+N L K    D +++  L+DG    G ++    LL  M+    
Sbjct: 866 ICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNF 925

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            P+  TY  L     R GK  E+  L D++K
Sbjct: 926 TPNIQTYVILGRELSRIGKSIESEPLADKLK 956


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 173/344 (50%), Gaps = 46/344 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ PD  TY S ++  CK G L+EA  +L  ++  GL PT +TYNTLIDGYC  G+
Sbjct: 369 MRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGD 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLL------IHELLMERKMVEADDMLKE--------- 105
           L  A   ++EMV+QG  P   TY +L      +  L M R+    D+ML +         
Sbjct: 429 LAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFF--DEMLSKGLQPDCFAY 486

Query: 106 ----------------------MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
                                 M  KGI PD++TYN++I+G C+ GN K A  L  +M+ 
Sbjct: 487 NTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVS 546

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G+QP  +TYT LI    ++  + EA +L    ++ G+ P +V +  L+   C  GN+  
Sbjct: 547 DGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYS 606

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A+   ++M  + + P+E+TYN L+H  C  G+   A R   +M  RG+ P+       + 
Sbjct: 607 AYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPN-------KY 659

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           TY  LI G C+      A  L  EM   GI PD  T+ +L +G 
Sbjct: 660 TYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 703



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 164/334 (49%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P   TY + + G+ K  + E A     +M+  GL+P  +TYN+L++ YC  GN
Sbjct: 334 MENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGN 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     ++ + G+ PT  TYN LI        + EA  + +EM E+G  PD  TY I
Sbjct: 394 LKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTI 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG  +  N   A    DEM+ KG+QP    Y + I      +    A QL E  + KG
Sbjct: 454 LMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +N +IDG C  GN++ A  L  +M    + PD +TY  L+H  C +G + EAR
Sbjct: 514 IYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREAR 573

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LL+ M   G++P  +++                             P  +TYN LI  L
Sbjct: 574 KLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHAL 633

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C      LA     EM+ +G+ P+  TY  LI+G
Sbjct: 634 CMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDG 667



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 152/302 (50%), Gaps = 8/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   +  T+   +S + +EG LE A ++++ M+ +    ++ TYN LI     +G +  A
Sbjct: 269 GFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKA-SSFTYNPLITALLERGFVRKA 327

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            + + EM  +GIMPT  TYN +IH LL   +   A     EM   G++PD ITYN L+N 
Sbjct: 328 EALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNR 387

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ GN K+A  L  ++   G+ PT+LTY +LI    +   + EA +L E  + +G  PD
Sbjct: 388 YCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPD 447

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +  L++G     N+  A     EM    + PD   YNT +           A +L +
Sbjct: 448 VCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLRE 507

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +GI PD +       TYN +I GLCK      A+ L  +MVS G+ PD  TY  LI
Sbjct: 508 VMMLKGIYPDTV-------TYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLI 560

Query: 305 EG 306
             
Sbjct: 561 HA 562



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 152/300 (50%), Gaps = 14/300 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV PD       +  +    R ++   +  +M +  + PT VTYNTL+D +  +G  + A
Sbjct: 197 GVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEA 256

Query: 65  FSFRDEMVKQ--GIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSITYNI 120
                EM  Q  G      T+N++I  L  E  +  A  ++  M   +K     S TYN 
Sbjct: 257 SMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKA---SSFTYNP 313

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI      G  +KA +L  EM ++GI PT++TY ++I  L K  +   A   F    A G
Sbjct: 314 LITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMG 373

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ +N+L++ +C  GN++ A  LL ++ R  + P  +TYNTL+ G CR G + EAR
Sbjct: 374 LLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEAR 433

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL ++M  +G  PD         TY  L+ G  K +   +A E   EM+SKG+ PD   Y
Sbjct: 434 RLKEEMVEQGCFPD-------VCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAY 486



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 129/249 (51%), Gaps = 14/249 (5%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNILINGYCR 127
           EM++  + PT  TYN L+   L E +  EA  +LKEM  +G     + +T+N++I+   R
Sbjct: 227 EMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAR 286

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+ + A  L D M     + +  TY  LI  L ++  + +A+ L      +G++P +V 
Sbjct: 287 EGHLENAVKLVDSM-RLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVT 345

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +NA+I G       E A     EM  M + PD +TYN+L++  C+ G ++EA  LL  ++
Sbjct: 346 YNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLR 405

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIE 305
           R G+ P       T LTYN LI G C+   GDLAE   L  EMV +G  PD  TY  L+ 
Sbjct: 406 RAGLAP-------TVLTYNTLIDGYCR--LGDLAEARRLKEEMVEQGCFPDVCTYTILMN 456

Query: 306 GIASVDKAA 314
           G   V   A
Sbjct: 457 GSRKVRNLA 465


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 165/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD YT    +       R++ A  +  +M + GL P AVT+NTLI+G C  G 
Sbjct: 121 MELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGK 180

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  F D+    G  PT  TY  +I+ L    +   A  + K+M E G  P+ +TYNI
Sbjct: 181 FAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNI 240

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+     +A  +   M  K I P + TY SLI  L    R  EA  L     +  
Sbjct: 241 LIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLN 300

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+I  FN L+D  C  G +  A  + K M  M V PD VTY++LM+G   + ++ EAR
Sbjct: 301 IMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEAR 360

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D M  +G KPD  S       YN LI+G CK +  D A++L  EM+ +G+TPD+  Y
Sbjct: 361 KLFDAMITKGCKPDAFS-------YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNY 413

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI G+  + +  E+ +
Sbjct: 414 NTLIHGLCQLGRLREAQD 431



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++ + PD +TY S + G+C   R +EAS +L +M    ++P   T+N L+D  C +G 
Sbjct: 261 MKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGK 320

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P   TY+ L++   +  ++VEA  +   M  KG  PD+ +YNI
Sbjct: 321 VSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNI 380

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC+     +A  L +EMIH+G+ P  + Y +LI  L +  R+ EA  LF+N  + G
Sbjct: 381 LIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNG 440

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+  ++ L+DG C  G + +AF L + M    + PD   YN L+   C+ G +++AR
Sbjct: 441 NLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDAR 500

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  ++  +G+ P+          Y  +I  LCK    D A E  R M   G  PD+ +Y
Sbjct: 501 KLFSELFVQGLLPN-------VQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSY 553

Query: 301 FSLIEGI 307
             +I G 
Sbjct: 554 NVIIRGF 560



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            ++ G QP  YTY + ++G+CK G    A+ + ++M+E G  P  VTYN LID  C    
Sbjct: 191 FEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKL 250

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  + I P   TYN LI  L   R+  EA  +L EM    I+P+  T+N+
Sbjct: 251 VNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNV 310

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+ G   +A  +   M   G++P ++TY+SL++  S +  ++EA +LF+  + KG
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG 370

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +N LI G+C    I+ A  L  EM    + PD V YNTL+HG C+ G++ EA+
Sbjct: 371 CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQ 430

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   G  PD         TY+ L+ G CK      A  L R M S  + PD   Y
Sbjct: 431 DLFKNMHSNGNLPD-------LFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMY 483

Query: 301 FSLIEGIA 308
             LI+ + 
Sbjct: 484 NILIDAMC 491



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD+ T+ + ++G+CK G+  +A    +  + +G  PT  TY T+I+G C  G 
Sbjct: 156 MIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGE 215

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M + G  P   TYN+LI  L  ++ + EA D+   M  K I PD  TYN 
Sbjct: 216 TTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNS 275

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C     K+A +L +EM    I P + T+  L+  + K+ ++ EA  +F+     G
Sbjct: 276 LIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMG 335

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +++L+ G+     I  A  L   M      PD  +YN L+ G C+  +++EA+
Sbjct: 336 VEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAK 395

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L ++M  +G+ PD+++       YN LI GLC+      A++L + M S G  PD  TY
Sbjct: 396 QLFNEMIHQGLTPDNVN-------YNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTY 448

Query: 301 FSLIEGIA 308
             L++G  
Sbjct: 449 SMLLDGFC 456



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 129/251 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PD  TY S + G      + EA ++ + M   G  P A +YN LI GYC    
Sbjct: 331 MTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKR 390

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM+ QG+ P    YN LIH L    ++ EA D+ K M   G +PD  TY++
Sbjct: 391 IDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSM 450

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G   KAF L   M    ++P +  Y  LI  + K   + +A +LF     +G
Sbjct: 451 LLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQG 510

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++ ++  +I+  C  G ++ A    + M+     PDE +YN ++ G  +      A 
Sbjct: 511 LLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAA 570

Query: 241 RLLDQMKRRGI 251
           +L+ +M+ RG 
Sbjct: 571 QLIGEMRDRGF 581



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S  ++PD   Y   +  MCK G L++A ++  ++   GL+P    Y T+I+  C +G 
Sbjct: 471 MQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGL 530

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           L+ A      M   G  P   +YN++I   L  +    A  ++ EM ++G V ++ T
Sbjct: 531 LDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 174/307 (56%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G   ++ TY   + G+C  G +E+A  + E+M + G +PT VTYNTLI+GY  KGN
Sbjct: 399 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGN 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M + G  P   TYN L+       K+  A    +EM E G+ P+ ++Y  
Sbjct: 459 VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTA 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G    A SL   M   G  P + +Y ++I  LSK+NR  EA+++ +  + +G
Sbjct: 519 LIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQG 578

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+++ +  LIDG C NG  + AF +  +M++ K  P+  TY++L++G C++GK +EA 
Sbjct: 579 LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE 638

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M+R+G+ PD +       T+ +LI G       D A  LLR MV  G  P+  TY
Sbjct: 639 ILLKEMERKGLAPDEV-------TFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTY 691

Query: 301 FSLIEGI 307
             L++G+
Sbjct: 692 SVLLKGL 698



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 176/340 (51%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG +P+  TY + +SG+ + G+LE A  +  +M + GLVP  VTYN LI+  C  G 
Sbjct: 329 MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M   G +    TYN +I  L +   + +A  + ++M + G +P  +TYN 
Sbjct: 389 FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY   GN   A  L D M   G +P   TY  L+   SK  ++  A   F+  +  G
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V + ALIDGH  +G ++ A SLLK M+ M  +P+  +YN +++G  ++ +  EA 
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAE 568

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           ++ D+M  +G+ P+ I++                             P   TY++LI GL
Sbjct: 569 KICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 628

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           C+  + D AE LL+EM  KG+ PD+ T+ SLI+G   + +
Sbjct: 629 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGR 668



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 191/379 (50%), Gaps = 63/379 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+QP   T+ + ++ + K+G++ EA  +L Q+ +  L P   TY +LI G+C   N
Sbjct: 189 MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++AF   D MVK+G  P + TY+ LI+ L  E ++ EA DML+EM EKGI P   TY +
Sbjct: 249 LDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTL 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C   + ++A  L   M  +G +P + TYT+LI  LS+  ++  A  L+   L +G
Sbjct: 309 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG 368

Query: 181 MLPDIVMFNALI-------------------DGH----------------CTNGNIERAF 205
           ++P+ V +NALI                   +GH                C  G+IE+A 
Sbjct: 369 LVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM 428

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
            L ++M +M   P  VTYNTL++G   +G V  A RLLD MK  G +PD  ++       
Sbjct: 429 VLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF 488

Query: 259 ---------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                NP  ++Y ALI G  K+ + D+A  LL+ M   G  P+ 
Sbjct: 489 SKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNV 548

Query: 298 NTYFSLIEGIASVDKAAES 316
            +Y ++I G++  ++ +E+
Sbjct: 549 ESYNAVINGLSKENRFSEA 567



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 134/256 (52%), Gaps = 8/256 (3%)

Query: 58  KGNLEMAFSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           K N+    S  + +V+  +  P      L+I     E ++    D L E+   G      
Sbjct: 105 KHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLY 164

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           + N L+    +    + A +L+ +M++ GIQP++LT+ +LI +LSK+ ++ EA+ +    
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
               + PD+  + +LI GHC N N++ AF +   M +    P+ VTY+TL++G C +G+V
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +EA  +L++M  +GI+       PT  TY   I  LC  +  + A EL+  M  +G  P+
Sbjct: 285 DEALDMLEEMIEKGIE-------PTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPN 337

Query: 297 DNTYFSLIEGIASVDK 312
             TY +LI G++ + K
Sbjct: 338 VQTYTALISGLSRLGK 353



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 96/168 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+  +Y + ++G+ KE R  EA ++ ++M E GL+P  +TY TLIDG C  G 
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGR 598

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF    +M K+  +P   TY+ LI+ L  E K  EA+ +LKEM  KG+ PD +T+  
Sbjct: 599 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTS 658

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           LI+G+   G    AF L   M+  G +P   TY+ L+  L K+  ++E
Sbjct: 659 LIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKECLLLE 706



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 140/293 (47%), Gaps = 11/293 (3%)

Query: 20  MCKEGRLEEASR----MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
           M K  R EE  R     L ++   G   +  + NTL+        +E A +   +M+  G
Sbjct: 134 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 193

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I P+  T+N LI+ L  + K+ EA+ +L ++ +  + PD  TY  LI G+CR  N   AF
Sbjct: 194 IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAF 253

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            + D M+ +G  P  +TY++LI  L  + R+ EA  + E  + KG+ P +  +   I   
Sbjct: 254 GVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 313

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C   + E A  L+  M +    P+  TY  L+ G  R GK+E A  L  +M + G+ P+ 
Sbjct: 314 CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNT 373

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +       TYNALI  LC       A ++   M   G   +  TY  +I+G+ 
Sbjct: 374 V-------TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLC 419


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+ + Y + ++ +CK G L++A  +   M    L P  +TY+ LID +C  G L++A
Sbjct: 360 GFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVA 419

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S+ D M++ GI  T   YN LI+       +  A+ +  EM  KG+ P + T+  LI+G
Sbjct: 420 ISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISG 479

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+    +KAF L+++MI  GI P + T+T+LI  L   N+M EA +LF+  + + + P 
Sbjct: 480 YCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPT 539

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N LI+G+C +G I++AF LL++M +  + PD  TY  L+ G C  G+V +A+  +D
Sbjct: 540 EVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFID 599

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR--EMVSKGITPDDNTYFS 302
            + ++ +K +        + Y+AL+ G C  QEG L E L    EM+ +GI  D   +  
Sbjct: 600 DLHKQNVKLN-------EMCYSALLHGYC--QEGRLMEALSASCEMIQRGINMDLVCHAV 650

Query: 303 LIEG 306
           LI+G
Sbjct: 651 LIDG 654



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 165/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +G+  D  TY + V G C+  + E   +++++M E G  PT    + L+DG   +G 
Sbjct: 286 LGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGK 345

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    ++ + G +P    YN LI+ L     + +A+ +   M    + P+ ITY+I
Sbjct: 346 IDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSI 405

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +CR G    A S  D MI  GI  T+  Y SLI    K   +  A+ LF     KG
Sbjct: 406 LIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKG 465

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    F +LI G+C +  +++AF L  +M    + P+  T+  L+ G C   K+ EA 
Sbjct: 466 VEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEAS 525

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D++  R IK       PT +TYN LI+G C++ + D A ELL +M  KG+ PD  TY
Sbjct: 526 ELFDELVERKIK-------PTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTY 578

Query: 301 FSLIEGIASVDKAAESSN 318
             LI G+ S  + +++ +
Sbjct: 579 RPLISGLCSTGRVSKAKD 596



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 169/336 (50%), Gaps = 51/336 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD+YTY   +SG+C  GR+ +A   ++ + +  +    + Y+ L+ GYC +G 
Sbjct: 566 MHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGR 625

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-----DMLKEMGEKGIVPDS 115
           L  A S   EM+++GI       +L+ H +L++  + + D     D+LK+M ++G+ PD+
Sbjct: 626 LMEALSASCEMIQRGI-----NMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDN 680

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + Y  +I+ Y + G+ KKAF   D M+ +   P ++TYT+L+  L K   M  A  LF+ 
Sbjct: 681 VIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKR 740

Query: 176 FLA----------------------------------KGMLPDIVMFNALIDGHCTNGNI 201
             A                                  KG+L + V  N +I G C  G  
Sbjct: 741 MQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRF 800

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
             A  +L EM    + PD VTY+TL++  CR G V  + +L D M  RG++PD ++    
Sbjct: 801 HEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVA---- 856

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
              YN LI G C N E D A EL  +M+ +GI PD+
Sbjct: 857 ---YNLLIYGCCVNGELDKAFELRDDMLRRGIIPDN 889



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 160/335 (47%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+    Y Y S ++G CK G L  A  +  +M   G+ PTA T+ +LI GYC    
Sbjct: 426 MIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQ 485

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   ++M+  GI P   T+  LI  L    KM EA ++  E+ E+ I P  +TYN+
Sbjct: 486 VQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNV 545

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR G   KAF L ++M  KG+ P   TY  LI  L    R+ +A    ++   + 
Sbjct: 546 LIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQN 605

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + ++AL+ G+C  G +  A S   EM +  ++ D V +  L+ G  +Q   +   
Sbjct: 606 VKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFF 665

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL  M  +G++PD++ +                             P  +TY AL+ GL
Sbjct: 666 DLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGL 725

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK  E D A  L + M +  + P+  TY   ++ +
Sbjct: 726 CKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNL 760



 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 173/331 (52%), Gaps = 27/331 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ YT+ + +SG+C   ++ EAS + +++ E  + PT VTYN LI+GYC  G 
Sbjct: 496 MIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGK 555

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   ++M ++G++P   TY  LI  L    ++ +A D + ++ ++ +  + + Y+ 
Sbjct: 556 IDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSA 615

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC+ G   +A S   EMI +GI   ++ +  LI    KQ        L ++   +G
Sbjct: 616 LLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQG 675

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++ ++ID +   G+ ++AF     M   +  P+ VTY  LM+G C+ G+++ A 
Sbjct: 676 LRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAG 735

Query: 241 RLLDQMKRRGIKPDHISF-----NPTR----------------------LTYNALIQGLC 273
            L  +M+   + P+ I++     N T+                      +T+N +I+G C
Sbjct: 736 LLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFC 795

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           K      A ++L EM   GI PD  TY +LI
Sbjct: 796 KLGRFHEATKVLSEMTENGIFPDCVTYSTLI 826



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 155/356 (43%), Gaps = 63/356 (17%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           R+ +A  +++ M  N L+P   T + L++G          +   DE V  G+ P   T +
Sbjct: 170 RIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCS 229

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN--------------------- 123
            ++  +   +  + A + ++ M   G     +TYN+LI+                     
Sbjct: 230 AVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGK 289

Query: 124 --------------GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
                         G+CR    +    L DEM+  G  PT    + L+  L KQ ++ +A
Sbjct: 290 GLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDA 349

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +L       G +P++ ++NALI+  C  G++++A  L   M  M + P+ +TY+ L+  
Sbjct: 350 YELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDS 409

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PT 261
            CR G+++ A    D+M + GI     ++N                            PT
Sbjct: 410 FCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPT 469

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
             T+ +LI G CK+ +   A +L  +M+  GITP+  T+ +LI G+ S +K AE+S
Sbjct: 470 ATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEAS 525



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 144/335 (42%), Gaps = 40/335 (11%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRML--EQMKENGLVP---TAVTYNTLIDGYCNKGNL 61
           +PD      FVS +C   R +++ ++   +    + L P     V  NTL D        
Sbjct: 31  KPDEENDCRFVSLLCDIVRGKQSWKVAFNDASISSTLRPHHVEQVLMNTLDDA------- 83

Query: 62  EMAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP------- 113
           ++A  F + + + + +  + ++Y +++H L+  R    A+ +L  +  +   P       
Sbjct: 84  KLALRFFNFLGLHKNMNHSTTSYAIMVHALVHSRLFWPANSLLHTLLLRESHPKCVFSHF 143

Query: 114 ----------DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
                      ++ +N+L+  Y        A  +   M    + P + T ++L+  L K 
Sbjct: 144 LDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKV 203

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            + I   +LF+  +  G+ PD    +A++   C   +  RA   ++ M+        VTY
Sbjct: 204 RKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTY 263

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N L+HG C+  +V EA  +   +  +G+  D +       TY  L+ G C+ Q+ +   +
Sbjct: 264 NVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVV-------TYCTLVLGFCRLQQFEAGIQ 316

Query: 284 LLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
           L+ EMV  G +P +     L++G+     +D A E
Sbjct: 317 LMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYE 351


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 172/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+QPD Y Y   +  +CK GR  EA  + + +   G+ P    Y  L+ GY  +G+
Sbjct: 263 MSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGS 322

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    SF D MV  G+ P    +N++      +  + EA  +  +M ++ + P+ +TY  
Sbjct: 323 LSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGA 382

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++MI +G+ P +  ++SL++ L   ++  +A++LF   L +G
Sbjct: 383 LIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQG 442

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V FN L+   C  G +  A  L+  M R+ V PD ++YNTL+ G C  G+++EA 
Sbjct: 443 IRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAA 502

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD +   G+KPD       ++TYN L+ G CK +  D A  L REM+ KG+TPD  TY
Sbjct: 503 KLLDVIVSIGLKPD-------KVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTY 555

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+    + +E+
Sbjct: 556 NTILHGLFQTGRFSEA 571



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 152/307 (49%), Gaps = 10/307 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG---LVPTAVTYNTLIDGYCN 57
           M   G  PD ++Y   + G C E R EEA  +L  M ++G     P  VTY T+IDG C 
Sbjct: 155 MPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCK 214

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
              ++ A      M+ +G+ P   TY  LIH  L   K  E   ML+EM   G+ PD   
Sbjct: 215 AQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYI 274

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y +L++  C+ G   +A ++ D +I KGI+P +  Y  L+   + +  + E     +  +
Sbjct: 275 YAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMV 334

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G+ PD  +FN +   +     I+ A  +  +M + ++ P+ VTY  L+   C+ G+V+
Sbjct: 335 GNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVD 394

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A    +QM   G+ PD   F       ++L+ GLC   + + AEEL  E++ +GI  D 
Sbjct: 395 DAVLKFNQMIDEGMTPDIFVF-------SSLVYGLCTVDKWEKAEELFFEVLDQGIRLDT 447

Query: 298 NTYFSLI 304
             + +L+
Sbjct: 448 VFFNTLM 454



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 156/296 (52%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD + +        K+  ++EA  + ++M++  L P  VTY  LID  C  G 
Sbjct: 333 MVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGR 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G+ P    ++ L++ L    K  +A+++  E+ ++GI  D++ +N 
Sbjct: 393 VDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNT 452

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   CR G   +A  L D M+  G++P +++Y +L+       R+ EA +L +  ++ G
Sbjct: 453 LMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIG 512

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +N L+ G+C    I+ A+SL +EM    + PD VTYNT++HG  + G+  EA+
Sbjct: 513 LKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAK 572

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L   M     + +         TYN +I GLCKN   D A ++   + SK +  D
Sbjct: 573 ELYLSMINSRTQMN-------IYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLD 621



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 153/307 (49%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + + P+  TYG+ +  +CK GR+++A     QM + G+ P    +++L+ G C    
Sbjct: 368 MRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDK 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     E++ QGI      +N L+  L  E +++EA  ++  M   G+ PD I+YN 
Sbjct: 428 WEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNT 487

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C  G   +A  L D ++  G++P  +TY +L+    K  R+ +A  LF   L KG
Sbjct: 488 LVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKG 547

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N ++ G    G    A  L   M   +   +  TYN +++G C+   V+EA 
Sbjct: 548 LTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAF 607

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   +  + ++ D         T N +I  L K    + A +L   + + G+ PD  TY
Sbjct: 608 KMFHSLCSKDLQLD-------IFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETY 660

Query: 301 FSLIEGI 307
             + E +
Sbjct: 661 CLIAENL 667



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 159/351 (45%), Gaps = 47/351 (13%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLE------------------------------EASR---- 31
           V P S+TY   +   C+ GRL+                              +A R    
Sbjct: 88  VAPSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEA 147

Query: 32  ---MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG---IMPTASTYNL 85
              +L +M E G  P   +Y+ L+ G+CN+   E A      M   G     P   TY  
Sbjct: 148 TDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTT 207

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L   + +  A  + + M +KG+ P++ TY  LI+GY   G  K+   +  EM   G
Sbjct: 208 VIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHG 267

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +QP    Y  L+  L K  R  EA  +F++ + KG+ P++ ++  L+ G+ T G++    
Sbjct: 268 LQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMH 327

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           S L  M    V PD   +N +     ++  ++EA  + D+M+++ + P+ +       TY
Sbjct: 328 SFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIV-------TY 380

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            ALI  LCK    D A     +M+ +G+TPD   + SL+ G+ +VDK  ++
Sbjct: 381 GALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKA 431



 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++ D+  + + +  +C+EGR+ EA R+++ M   G+ P  ++YNTL+DG+C  G ++ 
Sbjct: 441 QGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDE 500

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    D +V  G+ P   TYN L+H     R++ +A  + +EM  KG+ PD +TYN +++
Sbjct: 501 AAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILH 560

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G  + G   +A  L+  MI+   Q  + TY  +I  L K N + EA ++F +  +K +  
Sbjct: 561 GLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQL 620

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI   N +I      G  E A  L   +    + PD  TY  +     ++G +EE   L 
Sbjct: 621 DIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELF 680

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M+  G  P+      +R+  NAL++ L    + + A   L ++  K  + + +T   L
Sbjct: 681 SAMEENGTAPN------SRML-NALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSML 733

Query: 304 I 304
           I
Sbjct: 734 I 734



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 97/210 (46%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G++PD  TY + + G CK  R+++A  +  +M   GL P  VTYNT++ G    G   
Sbjct: 510 SIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFS 569

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M+         TYN++I+ L     + EA  M   +  K +  D  T NI+I
Sbjct: 570 EAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMI 629

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
               + G  + A  L   +   G+ P + TY  +   L K+  + E D+LF      G  
Sbjct: 630 GALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTA 689

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           P+  M NAL+      G+I RA + L ++D
Sbjct: 690 PNSRMLNALVRWLLHRGDINRAGAYLSKLD 719



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 20/267 (7%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMER-----KMVEA--DDMLKEMGEKGIVPDSI 116
           A    DEM+      +   +N L+  +   R     ++V +  + M++E   K + P S 
Sbjct: 35  ALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIK-VAPSSF 93

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT-MLTYTSLIFVLSKQNRMIEA-DQLFE 174
           TY ILI  +CR G  K  F+    ++  G +    + ++ L+  L    R+ EA D L  
Sbjct: 94  TYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLR 153

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVH-PDEVTYNTLMHGRC 231
                G  PD+  ++ L+ G C     E A  LL  M  D    H P+ VTY T++ G C
Sbjct: 154 RMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLC 213

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           +   V+ A+ +   M  +G++P++        TY  LI G     +     ++L+EM + 
Sbjct: 214 KAQMVDRAKGVFQHMIDKGVRPNN-------HTYTCLIHGYLSIGKWKEVVQMLQEMSTH 266

Query: 292 GITPDDNTYFSLIEGIASVDKAAESSN 318
           G+ PD   Y  L++ +    +  E+ N
Sbjct: 267 GLQPDCYIYAVLLDYLCKNGRCTEARN 293



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 71/170 (41%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           Q + YTY   ++G+CK   ++EA +M   +    L     T N +I      G  E A  
Sbjct: 584 QMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMD 643

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               +   G++P   TY L+   L+ E  + E D++   M E G  P+S   N L+    
Sbjct: 644 LFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLL 703

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
             G+  +A +   ++  K       T + LI + S+      A  L E +
Sbjct: 704 HRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYSRGEYQQLAKSLPEKY 753



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+ +Q D +T    +  + K GR E+A  +   +   GLVP   TY  + +    +G+LE
Sbjct: 615 SKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLE 674

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                   M + G  P +   N L+  LL    +  A   L ++ EK    ++ T ++LI
Sbjct: 675 ELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLI 734

Query: 123 NGYCR 127
           + Y R
Sbjct: 735 SIYSR 739


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ PD YTY + + GMCKEG +E A+ ++  +   G  P  ++YN L+  + N+G 
Sbjct: 233 MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGK 292

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       EM  +G  P   TY++LI  L    ++ EA  +LK M EK + PD+ +Y+ 
Sbjct: 293 WDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDP 352

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A  + D MI  G  P ++ Y +++  L K     +A ++F      G
Sbjct: 353 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 412

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  +N +I    + G+  RA  ++  M    V PDE+TYN+L+   CR G VEEA 
Sbjct: 413 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD M++ G       F PT ++YN ++ GLCK +  D A  +  EM+ KG  P++ TY
Sbjct: 473 GLLDDMEQSG-------FRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTY 525

Query: 301 FSLIEGIA 308
             LIEGI 
Sbjct: 526 ILLIEGIG 533



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 167/303 (55%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD + Y + +SG CK  R+E A+++L +MK  G +P  VTYN +I   CN+  L +A  
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALK 193

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D+++    MPT  TY +LI   ++E  + EA  +L+EM  +G++PD  TYN +I G C
Sbjct: 194 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 253

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G  ++A  L   +  KG +P +++Y  L+     Q +  E ++L     ++G  P+ V
Sbjct: 254 KEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 313

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LI   C  G I+ A S+LK M   ++ PD  +Y+ L+   C++G+++ A  ++D M
Sbjct: 314 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD ++       YN ++  LCKN   + A E+  ++   G  P+ ++Y ++I  
Sbjct: 374 ISNGCLPDIVN-------YNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISA 426

Query: 307 IAS 309
           + S
Sbjct: 427 LWS 429



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 155/316 (49%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + ++G  PD       + G      +E+ASR++E + E+   P    YN +I G+C    
Sbjct: 94  LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL-ESHTEPDVFAYNAVISGFCKVNR 152

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + M  +G +P   TYN++I  L   RK+  A  +L ++     +P  ITY I
Sbjct: 153 IEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTI 212

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI      G   +A  L +EM+ +G+ P M TY ++I  + K+  +  A +L  +  +KG
Sbjct: 213 LIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG 272

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N L+      G  +    L+ EM      P++VTY+ L+   CR G+++EA 
Sbjct: 273 CKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAI 332

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  M  + + PD  S++P       LI  LCK    DLA  ++  M+S G  PD   Y
Sbjct: 333 SVLKVMIEKELTPDTYSYDP-------LISALCKEGRLDLAIGIMDYMISNGCLPDIVNY 385

Query: 301 FSLIEGIASVDKAAES 316
            +++  +     A ++
Sbjct: 386 NTILAALCKNGNANQA 401



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 123/251 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG +P+  TY   +S +C+ GR++EA  +L+ M E  L P   +Y+ LI   C +G 
Sbjct: 303 MFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGR 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A    D M+  G +P    YN ++  L       +A ++  ++   G  P+  +YN 
Sbjct: 363 LDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNT 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+    CG+  +A  +   MI KG+ P  +TY SLI  L +   + EA  L ++    G
Sbjct: 423 MISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSG 482

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N ++ G C    I+ A  +  EM      P+E TY  L+ G    G   EA 
Sbjct: 483 FRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAM 542

Query: 241 RLLDQMKRRGI 251
            L + +  R +
Sbjct: 543 ELANSLFSRDV 553



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 8/221 (3%)

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           K  E+   L+ +  KG  PD I    LI G+    N +KA  +  E++    +P +  Y 
Sbjct: 83  KFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYN 141

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           ++I    K NR+  A Q+     A+G LPDIV +N +I   C    +  A  +L ++   
Sbjct: 142 AVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLD 201

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
              P  +TY  L+     +G + EA +LL++M  RG+ PD         TYNA+I+G+CK
Sbjct: 202 NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDM-------YTYNAIIRGMCK 254

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
               + A EL+  + SKG  PD  +Y  L+    +  K  E
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDE 295



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 35/217 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+Y+Y   +S +CKEGRL+ A  +++ M  NG +P  V YNT++   C  GN
Sbjct: 338 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 397

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL--------------MERKMVEADD----- 101
              A    +++   G  P  S+YN +I  L               M  K V+ D+     
Sbjct: 398 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNS 457

Query: 102 ----------------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                           +L +M + G  P  I+YNI++ G C+      A  +  EMI KG
Sbjct: 458 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 517

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            +P   TY  LI  +       EA +L  +  ++ ++
Sbjct: 518 CRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 554



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 32/185 (17%)

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  +  E+    E  + KG  PD+++   LI G     NIE+A S + E+      PD  
Sbjct: 80  KAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKA-SRVMEILESHTEPDVF 138

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------------------- 259
            YN ++ G C+  ++E A ++L++MK RG  PD +++N                      
Sbjct: 139 AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQL 198

Query: 260 ------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---V 310
                 PT +TY  LI+        + A +LL EM+++G+ PD  TY ++I G+     V
Sbjct: 199 LLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMV 258

Query: 311 DKAAE 315
           ++AAE
Sbjct: 259 ERAAE 263


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  203 bits (517), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 175/338 (51%), Gaps = 32/338 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK G    A R+L  M++    P  V Y ++ID  C    
Sbjct: 152 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQ 211

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   +MV QGI P   TY  L+H L  L E K V    +L +M    I+PD + +
Sbjct: 212 VTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT--LLNQMVNSKILPDVVIF 269

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + +++  C+ G   +A  + D MI +G++P ++TYT+L+     Q+ M EA ++F+  + 
Sbjct: 270 STVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR 329

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG  PD++ +  LI+G+C    I++A  L +EM R +  PD  TYNTLMHG C  G++++
Sbjct: 330 KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQD 389

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  L  +M  RG  PD +++                            NP    YN +I 
Sbjct: 390 AIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIID 449

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           G+C+  E + A +L   + SKG+ P   TY  +I G+ 
Sbjct: 450 GMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLC 487



 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD +TY S V  +C     +  + +L QM  + ++P  V ++T++D  C +G 
Sbjct: 222 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGK 281

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M+++G+ P   TY  L+    ++ +M EA  +   M  KG  PD I+Y  
Sbjct: 282 VTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTT 341

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L +EM  K   P   TY +L+  L    R+ +A  LF   +A+G
Sbjct: 342 LINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARG 401

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V ++ L+D  C N ++E A +LLK ++   ++PD   YN ++ G CR G++E AR
Sbjct: 402 QMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAAR 461

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+       +P+  TYN +I GLCK    + A +L  EM     +PD  TY
Sbjct: 462 DLFSNLSSKGL-------HPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTY 514

Query: 301 FSLIEGI 307
            ++  G 
Sbjct: 515 NTIARGF 521



 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 156/316 (49%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV P+ YT    ++  C   R+  A  +L ++ + G  P   T+ TLI G C +G 
Sbjct: 82  MDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGK 141

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+ +G  P   TY  LI+ L        A  +L+ M +    PD + Y  
Sbjct: 142 IGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTS 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF+L  +M+ +GI P + TYTSL+  L           L    +   
Sbjct: 202 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V+F+ ++D  C  G +  A  ++  M +  V PD VTY TLM G C Q +++EA 
Sbjct: 262 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M R+G  PD IS       Y  LI G CK  + D A  L  EM  K   PD  TY
Sbjct: 322 KVFDMMVRKGFAPDVIS-------YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTY 374

Query: 301 FSLIEGIASVDKAAES 316
            +L+ G+  V +  ++
Sbjct: 375 NTLMHGLCHVGRLQDA 390



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 157/309 (50%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ + K         +  QM   G+ P   T N LI+ +C+   +  AFS 
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +T+  LI  L +E K+ EA  +  +M ++G  P+ +TY  LING C+
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M     QP ++ YTS+I  L K  ++ EA  LF   + +G+ PDI  
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 233

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + +L+   C     +   +LL +M   K+ PD V ++T++   C++GKV EA  ++D M 
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 293

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
           +RG++PD +       TY  L+ G C   E D A ++   MV KG  PD  +Y +LI G 
Sbjct: 294 QRGVEPDVV-------TYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGY 346

Query: 307 --IASVDKA 313
             I  +DKA
Sbjct: 347 CKIHKIDKA 355



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+PD  TY + + G C +  ++EA ++ + M   G  P  ++Y TLI+GYC    
Sbjct: 292 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 351

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM ++  +P   TYN L+H L    ++ +A  +  EM  +G +PD +TY+I
Sbjct: 352 IDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 411

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+  + ++A +L   +    + P +  Y  +I  + +   +  A  LF N  +KG
Sbjct: 412 LLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG 471

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N +I G C  G +  A  L  EMD     PD  TYNT+  G  +  +   A 
Sbjct: 472 LHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAI 531

Query: 241 RLLDQMKRRGIKPD 254
           +LL++M  RG   D
Sbjct: 532 QLLEEMLARGFSAD 545



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 4/210 (1%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+ TY + + G+C  GRL++A  +  +M   G +P  VTY+ L+D  C   +LE A + 
Sbjct: 369 PDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMAL 428

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              +    + P    YN++I  +    ++  A D+   +  KG+ P   TYNI+I+G C+
Sbjct: 429 LKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCK 488

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  L  EM      P   TY ++     + N  + A QL E  LA+G   D+  
Sbjct: 489 RGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVST 548

Query: 188 FNALIDGHCTNGNIERA----FSLLKEMDR 213
              L++    +G  + +     S+L E DR
Sbjct: 549 TTLLVEMLSDDGLDQSSCFLMLSVLSEDDR 578



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 82/161 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  PD  TY   +  +CK   LEEA  +L+ ++ + L P    YN +IDG C  G 
Sbjct: 397 MVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGE 456

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P+  TYN++IH L     + EA+ +  EM      PD  TYN 
Sbjct: 457 LEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNT 516

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +  G+ +     +A  L +EM+ +G    + T T L+ +LS
Sbjct: 517 IARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLS 557


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 171/306 (55%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+ TY   + G C  G+LEEA R+L++M  +GL P  VTY+ LI  YC  G 
Sbjct: 261 MFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGR 320

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A S  D MV++G  P ++ Y++L+H    +  +++  D+L  M   GI  +   +NI
Sbjct: 321 CAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNI 380

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y + G   KA +   EM   G++P +++Y+++I +L K  R+ +A   F   +++G
Sbjct: 381 LICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEG 440

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ F +LI G C+ G  ++   L  EM    +HPD +  NT+M   C++G+V EA+
Sbjct: 441 LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQ 500

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              D +   G+KPD +S       YN LI G C   + D + + L  MVS G+ PD  TY
Sbjct: 501 DFFDMVIHIGVKPDVVS-------YNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTY 553

Query: 301 FSLIEG 306
            SL+ G
Sbjct: 554 NSLLNG 559



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 45/334 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG---LVPTAVTYNTLIDGYCN 57
           M   G  PD ++Y + + G+C E + +EA  +L  M  +G     P  V+YNT+IDG+  
Sbjct: 153 MPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFK 212

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++ A+    EM+ QG+ P   TYN LI  L   + M +A  +L+ M +KG++PD+ T
Sbjct: 213 EGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRT 272

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YNI+I GYC  G  ++A  L  +M   G+QP ++TY+ LI    K  R  EA  +F++ +
Sbjct: 273 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMV 332

Query: 178 AKGMLPDIVMFNALIDGHCTNGNI------------------ERAFSLL----------- 208
            KG  P+  +++ L+ G+ T G +                   RAF++L           
Sbjct: 333 RKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD 392

Query: 209 ------KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
                  EM +  + PD V+Y+T++H  C+ G+VE+A    +QM   G+ P+ ISF    
Sbjct: 393 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISF---- 448

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
               +LI GLC   E    EEL  EM+++GI PD
Sbjct: 449 ---TSLIHGLCSIGEWKKVEELAFEMINRGIHPD 479



 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 171/381 (44%), Gaps = 63/381 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD  TY   +   CK GR  EA  + + M   G  P +  Y+ L+ GY  KG 
Sbjct: 296 MSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGA 355

Query: 61  L-----------------------------------EMAFSFRDEMVKQGIMPTASTYNL 85
           L                                   + A +   EM + G+ P   +Y+ 
Sbjct: 356 LIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYST 415

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +IH L    ++ +A     +M  +G+ P+ I++  LI+G C  G  KK   L  EMI++G
Sbjct: 416 VIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG 475

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P  +   +++  L K+ R++EA   F+  +  G+ PD+V +N LIDG+C  G ++ + 
Sbjct: 476 IHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESI 535

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS-------- 257
             L  M  + + PD  TYN+L++G  + G+VE+A  L  +M R+ +K   I+        
Sbjct: 536 KQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGL 595

Query: 258 FNPTRL--------------------TYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           F   R+                    TYN ++ GLC+N   D A  +  ++ SK    D 
Sbjct: 596 FQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDV 655

Query: 298 NTYFSLIEGIASVDKAAESSN 318
            T+  +I  +  V +  E+ +
Sbjct: 656 RTFSIVINALLKVGRIDEAKS 676



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 158/321 (49%), Gaps = 16/321 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NK 58
           M   GV   +   G  +   C  GRL+ A        + G     VT N LI G C  N+
Sbjct: 82  MVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNR 141

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---IVPDS 115
            +  M   FR  M + G  P   +YN LI  L +E+K  EA ++L  M   G     P+ 
Sbjct: 142 TDDAMDMVFR-RMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNV 200

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           ++YN +I+G+ + G   KA+ L  EM+ +G+ P ++TY SLI  L K   M +A  + ++
Sbjct: 201 VSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQH 260

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
              KG++PD   +N +I G+C+ G +E A  LLK+M    + PD VTY+ L+   C+ G+
Sbjct: 261 MFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGR 320

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
             EAR + D M R+G KP     N T   Y+ L+ G           +LL  M+  GI  
Sbjct: 321 CAEARSVFDSMVRKGQKP-----NST--IYHILLHGYATKGALIDVRDLLDLMIRDGIPF 373

Query: 296 DDNTYFSLIEGIA---SVDKA 313
           +   +  LI   A   +VDKA
Sbjct: 374 EHRAFNILICAYAKHGAVDKA 394



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A  +   M  +G+   A     LI  +C  G L++AF+     +K G      T N LI 
Sbjct: 75  AVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIK 134

Query: 89  ELLMERKMVEADDML-KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-- 145
            L    +  +A DM+ + M E G  PD  +YN LI G C    +++A  L   M   G  
Sbjct: 135 GLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGY 194

Query: 146 -IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
              P +++Y ++I    K+  + +A  LF   + +G+ PD+V +N+LIDG C    +++A
Sbjct: 195 NCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKA 254

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            ++L+ M    V PD  TYN ++ G C  G++EEA RLL +M   G++PD +       T
Sbjct: 255 VAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVV-------T 307

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           Y+ LIQ  CK      A  +   MV KG  P+   Y  L+ G A+
Sbjct: 308 YSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYAT 352



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 134/259 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ P+  ++ S + G+C  G  ++   +  +M   G+ P A+  NT++D  C +G 
Sbjct: 436 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGR 495

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D ++  G+ P   +YN LI       KM E+   L  M   G+ PDS TYN 
Sbjct: 496 VVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNS 555

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGY + G  + A +L+ EM  K ++   +T   ++  L +  R++ A +L+   + +G
Sbjct: 556 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRG 615

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I  +N ++ G C N  ++ A  + +++   +   D  T++ +++   + G+++EA+
Sbjct: 616 TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAK 675

Query: 241 RLLDQMKRRGIKPDHISFN 259
            L   M  RG  PD I+++
Sbjct: 676 SLFSAMVLRGPVPDVITYS 694



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 135/254 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ PD+    + +  +CKEGR+ EA    + +   G+ P  V+YNTLIDGYC  G 
Sbjct: 471 MINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGK 530

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ +    D MV  G+ P + TYN L++      ++ +A  + +EM  K +   +IT NI
Sbjct: 531 MDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNI 590

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G  + G    A  L+ +M+ +G Q  + TY +++  L + + + EA ++FE+  +K 
Sbjct: 591 MLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKE 650

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+  F+ +I+     G I+ A SL   M      PD +TY+ ++     +G +EE+ 
Sbjct: 651 FELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESD 710

Query: 241 RLLDQMKRRGIKPD 254
            L   M++ G   D
Sbjct: 711 NLFLSMEKNGCAAD 724



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 127/245 (51%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  +Y + + G C  G+++E+ + L++M   GL P + TYN+L++GY   G +E A
Sbjct: 510 GVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDA 569

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EM ++ +   A T N+++H L    ++V A ++  +M ++G      TYN ++ G
Sbjct: 570 LALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGG 629

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C      +A  + +++  K  +  + T++ +I  L K  R+ EA  LF   + +G +PD
Sbjct: 630 LCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPD 689

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ ++ +I  H   G +E + +L   M++     D    N ++     +G V  A   L 
Sbjct: 690 VITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLT 749

Query: 245 QMKRR 249
           ++  +
Sbjct: 750 KIDEK 754



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 106/212 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PDS+TY S ++G  K GR+E+A  +  +M    +   A+T N ++ G    G 
Sbjct: 541 MVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGR 600

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +MV +G      TYN ++  L     + EA  M +++  K    D  T++I
Sbjct: 601 IVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSI 660

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN   + G   +A SL   M+ +G  P ++TY+ +I    ++  + E+D LF +    G
Sbjct: 661 VINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNG 720

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
              D  M N ++      G++ RA + L ++D
Sbjct: 721 CAADSHMLNIIVRRLLEKGDVRRAGTYLTKID 752



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           +A  A SL + M+  G+         LI       R+  A   F  FL  G     V  N
Sbjct: 71  SAALAVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLN 130

Query: 190 ALIDGHCTNGNIERAFSLL-KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            LI G C     + A  ++ + M  +   PD  +YN L+ G C + K +EA  LL  M  
Sbjct: 131 QLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTA 190

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G      + +P  ++YN +I G  K  E D A  L  EM+ +G+ PD  TY SLI+G+ 
Sbjct: 191 DG----GYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLC 246

Query: 309 ---SVDKAA 314
              ++DKA 
Sbjct: 247 KAQAMDKAV 255



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 82/176 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG Q    TY + + G+C+   ++EA RM E ++         T++ +I+     G 
Sbjct: 611 MVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGR 670

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S    MV +G +P   TY+L+I   + E  + E+D++   M + G   DS   NI
Sbjct: 671 IDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNI 730

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           ++      G+ ++A +   ++  K       T   LI ++S++    E   L E +
Sbjct: 731 IVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLIPIVSEKKYQKEVKFLPEKY 786



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALI-------DGHCTNGNIERAFSLLKEMDRMKVHPDE 220
           +A  LF+  L +     +  FN+++              +   A SL   M R  V+   
Sbjct: 32  DALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMMA 91

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK-NQEGD 279
                L+   C  G+++ A        + G +  ++       T N LI+GLC  N+  D
Sbjct: 92  AIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNV-------TLNQLIKGLCDGNRTDD 144

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             + + R M   G TPD  +Y +LI+G+    K+ E+
Sbjct: 145 AMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEA 181


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+++G++P+  TY S +S +C  GR  +ASR+L  M E  + P   T++ LID +  +G 
Sbjct: 896  METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 955

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A    DEMVK+ I P+  TY+ LI+   M  ++ EA  M + M  K   PD +TYN 
Sbjct: 956  LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 1015

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI G+C+    ++   +  EM  +G+    +TY  LI  L +      A ++F+  ++ G
Sbjct: 1016 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 1075

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P+I+ +N L+DG C NG +E+A  + + + R K+ P   TYN ++ G C+ GKVE+  
Sbjct: 1076 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 1135

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L   +  +G+KPD ++       YN +I G C+    + A+ L +EM   G  P+   Y
Sbjct: 1136 DLFCNLSLKGVKPDVVA-------YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 1188

Query: 301  FSLIEG 306
             +LI  
Sbjct: 1189 NTLIRA 1194



 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 171/312 (54%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  T GS V+G C+  R+ +A  ++++M E G  P  V YN +ID  C    +  A
Sbjct: 253 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDA 312

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F F  E+ ++GI P   TY  L++ L    +  +A  +L +M +K I P+ ITY+ L++ 
Sbjct: 313 FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 372

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G   +A  L +EM+   I P ++TY+SLI  L   +R+ EA+Q+F+  ++KG L D
Sbjct: 373 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 432

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LI+G C    +E    L +EM +  +  + VTYNTL+ G  + G V++A+    
Sbjct: 433 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 492

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   GI PD         TYN L+ GLC N E + A  +  +M  + +  D  TY ++I
Sbjct: 493 QMDFFGISPDI-------WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 545

Query: 305 EGIASVDKAAES 316
            G+    K  E+
Sbjct: 546 RGMCKTGKVEEA 557



 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 177/304 (58%), Gaps = 7/304 (2%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G QP++ T+ + + G+    +  EA  ++++M   G  P  VTY  +++G C +G+ ++A
Sbjct: 795  GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            F+  ++M +  + P    YN +I  L   + M +A ++ KEM  KGI P+ +TY+ LI+ 
Sbjct: 855  FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 914

Query: 125  YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             C  G    A  L  +MI + I P + T+++LI    K+ +++EA++L++  + + + P 
Sbjct: 915  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 974

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            IV +++LI+G C +  ++ A  + + M      PD VTYNTL+ G C+  +VEE   +  
Sbjct: 975  IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 1034

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +M +RG+  + +       TYN LIQGL +  + D+A+E+ +EMVS G+ P+  TY +L+
Sbjct: 1035 EMSQRGLVGNTV-------TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 1087

Query: 305  EGIA 308
            +G+ 
Sbjct: 1088 DGLC 1091



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 175/336 (52%), Gaps = 28/336 (8%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M ++G QPD  TYG  V+G+CK G  + A  +L +M++  L P  + YNT+IDG C   +
Sbjct: 826  MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 885

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M E+ I PD  T++ 
Sbjct: 886  MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 945

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+ + + G   +A  L+DEM+ + I P+++TY+SLI      +R+ EA Q+FE  ++K 
Sbjct: 946  LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 1005

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              PD+V +N LI G C    +E    + +EM +  +  + VTYN L+ G  + G  + A+
Sbjct: 1006 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 1065

Query: 241  RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
             +  +M   G+ P+ +++N                            PT  TYN +I+G+
Sbjct: 1066 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 1125

Query: 273  CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            CK  + +   +L   +  KG+ PD   Y ++I G  
Sbjct: 1126 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 1161



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 173/315 (54%), Gaps = 7/315 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M++ G+  + YTY   ++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 721  MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 780

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A +  D+M   G  P   T+N LIH L +  K  EA  ++  M  KG  PD +TY +
Sbjct: 781  ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 840

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++NG C+ G+   AF+L ++M    ++P +L Y ++I  L K   M +A  LF+    KG
Sbjct: 841  VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 900

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P++V +++LI   C  G    A  LL +M   K++PD  T++ L+    ++GK+ EA 
Sbjct: 901  IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAE 960

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L D+M +R I       +P+ +TY++LI G C +   D A+++   MVSK   PD  TY
Sbjct: 961  KLYDEMVKRSI-------DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 1013

Query: 301  FSLIEGIASVDKAAE 315
             +LI+G     +  E
Sbjct: 1014 NTLIKGFCKYKRVEE 1028



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 167/315 (53%), Gaps = 20/315 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +G++P+  TY + V+G+C   R  +A+R+L  M +  + P  +TY+ L+D +   G 
Sbjct: 319 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 378

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EMV+  I P   TY+ LI+ L +  ++ EA+ M   M  KG + D ++YN 
Sbjct: 379 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 438

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+    +    L  EM  +G+    +TY +LI    +   + +A + F      G
Sbjct: 439 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 498

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N L+ G C NG +E+A  + ++M + ++  D VTY T++ G C+ GKVEEA 
Sbjct: 499 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 558

Query: 241 RLLDQMKRRGIKPDHISFNP------------------TRLTYNALIQGLCKNQEGD--L 280
            L   +  +G+KPD +++                    T++    L++  C   +GD  L
Sbjct: 559 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITL 618

Query: 281 AEELLREMVSKGITP 295
           + EL+++M+S G  P
Sbjct: 619 SAELIKKMLSCGYAP 633



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 167/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++ D YT+   ++  C   ++  A  +L +M + G  P  VT  +L++G+C +  
Sbjct: 214 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  D+MV+ G  P    YN +I  L   +++ +A D  KE+  KGI P+ +TY  
Sbjct: 274 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 333

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C       A  L  +MI K I P ++TY++L+    K  +++EA +LFE  +   
Sbjct: 334 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 393

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +++LI+G C +  I+ A  +   M       D V+YNTL++G C+  +VE+  
Sbjct: 394 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 453

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M +RG+  + +       TYN LIQG  +  + D A+E   +M   GI+PD  TY
Sbjct: 454 KLFREMSQRGLVSNTV-------TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 506

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 507 NILLGGLC 514



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 166/318 (52%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR   P    +   +S + K  + +    + ++M+  G+     T+N +I+ +C    
Sbjct: 180 VKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQ 238

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A S   +M+K G  P   T   L++      ++ +A  ++ +M E G  PD + YN 
Sbjct: 239 VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 298

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+      AF    E+  KGI+P ++TYT+L+  L   +R  +A +L  + + K 
Sbjct: 299 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 358

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ ++AL+D    NG +  A  L +EM RM + PD VTY++L++G C   +++EA 
Sbjct: 359 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 418

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +G   D +S       YN LI G CK +  +   +L REM  +G+  +  TY
Sbjct: 419 QMFDLMVSKGCLADVVS-------YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTY 471

Query: 301 FSLIEGI---ASVDKAAE 315
            +LI+G      VDKA E
Sbjct: 472 NTLIQGFFQAGDVDKAQE 489



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 132/254 (51%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  R + P   TY S ++G C   RL+EA +M E M      P  VTYNTLI G+C    
Sbjct: 966  MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 1025

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +E       EM ++G++    TYN+LI  L        A ++ KEM   G+ P+ +TYN 
Sbjct: 1026 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 1085

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++G C+ G  +KA  + + +    ++PT+ TY  +I  + K  ++ +   LF N   KG
Sbjct: 1086 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 1145

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PD+V +N +I G C  G+ E A +L KEM      P+   YNTL+  R R G  E + 
Sbjct: 1146 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 1205

Query: 241  RLLDQMKRRGIKPD 254
             L+ +M+  G   D
Sbjct: 1206 ELIKEMRSCGFAGD 1219



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 156/294 (53%), Gaps = 7/294 (2%)

Query: 23  EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST 82
           E +L++A  +  +M ++   P+ + ++ L+         ++  S  ++M   GI     T
Sbjct: 673 ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 732

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y++LI+      ++  A  +L +M + G  P+ +T + L+NGYC      +A +L D+M 
Sbjct: 733 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 792

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             G QP  +T+ +LI  L   N+  EA  L +  +AKG  PD+V +  +++G C  G+ +
Sbjct: 793 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 852

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            AF+LL +M++ K+ P  + YNT++ G C+   +++A  L  +M+ +GI+P+ +      
Sbjct: 853 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV------ 906

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY++LI  LC       A  LL +M+ + I PD  T+ +LI+      K  E+
Sbjct: 907 -TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 959



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 131/254 (51%), Gaps = 7/254 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +MVK    P+   +N L+  ++  +K      + K+M   GI  D  T+NI+IN
Sbjct: 172 AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 231

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +C C     A S+  +M+  G +P  +T  SL+    ++NR+ +A  L +  +  G  P
Sbjct: 232 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKP 291

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DIV +NA+ID  C    +  AF   KE++R  + P+ VTY  L++G C   +  +A RLL
Sbjct: 292 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 351

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M ++ I P+ I       TY+AL+    KN +   A+EL  EMV   I PD  TY SL
Sbjct: 352 SDMIKKKITPNVI-------TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 404

Query: 304 IEGIASVDKAAESS 317
           I G+   D+  E++
Sbjct: 405 INGLCLHDRIDEAN 418



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 165/366 (45%), Gaps = 59/366 (16%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNT------------- 50
           +G++PD  TY + +SG+C +G L E   +  +MK+ GL+    T +              
Sbjct: 567 KGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKM 626

Query: 51  ------------LIDGYCNKG-NLEMAFS------FRD--------------------EM 71
                       +  G C K  +L  AFS      +R+                    EM
Sbjct: 627 LSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEM 686

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           VK    P+   ++ L+  +    K      + ++M   GI  +  TY+ILIN +CR    
Sbjct: 687 VKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQL 746

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
             A ++  +M+  G +P ++T +SL+       R+ EA  L +     G  P+ V FN L
Sbjct: 747 PLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTL 806

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I G   +     A +L+  M      PD VTY  +++G C++G  + A  LL++M++  +
Sbjct: 807 IHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKL 866

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           +P         L YN +I GLCK +  D A  L +EM +KGI P+  TY SLI  + +  
Sbjct: 867 EPG-------VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYG 919

Query: 312 KAAESS 317
           + +++S
Sbjct: 920 RWSDAS 925



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 59/360 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R +  D  TY + + GMCK G++EEA  +   +   GL P  VTY T++ G C KG 
Sbjct: 529 MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 588

Query: 61  LEMAFSFRDEM---------------------------------------VKQGIMPTA- 80
           L    +   +M                                       +K G+   A 
Sbjct: 589 LHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKAL 648

Query: 81  ---------STYNL---LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
                    ++Y+    L    L E K+ +A  +  EM +    P  I ++ L++   + 
Sbjct: 649 SLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM 708

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
                  SL ++M + GI     TY+ LI    +++++  A  +    +  G  P+IV  
Sbjct: 709 NKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTL 768

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           ++L++G+C +  I  A +L+ +M      P+ VT+NTL+HG     K  EA  L+D+M  
Sbjct: 769 SSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVA 828

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +G +PD +       TY  ++ GLCK  + DLA  LL +M    + P    Y ++I+G+ 
Sbjct: 829 KGCQPDLV-------TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 881



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%)

Query: 6    VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
            ++P  YTY   + GMCK G++E+   +   +   G+ P  V YNT+I G+C KG+ E A 
Sbjct: 1111 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 1170

Query: 66   SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
            +   EM + G +P +  YN LI   L +     + +++KEM   G   D+ T  ++ N
Sbjct: 1171 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 1228



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 42/188 (22%)

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNAL--------------------------------- 191
           ++ +A  LF + +     P IV FN L                                 
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 192 --IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
             I+  C    +  A S+L +M ++   PD VT  +L++G CR+ +V +A  L+D+M   
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           G KPD ++       YNA+I  LCK +  + A +  +E+  KGI P+  TY +L+ G+ +
Sbjct: 288 GYKPDIVA-------YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 340

Query: 310 VDKAAESS 317
             + ++++
Sbjct: 341 SSRWSDAA 348



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query: 4    RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
            +GV+PD   Y + +SG C++G  EEA  + ++MKE+G +P +  YNTLI      G+ E 
Sbjct: 1144 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREA 1203

Query: 64   AFSFRDEMVKQGIMPTASTYNLLIHEL 90
            +     EM   G    AST  L+ + L
Sbjct: 1204 SAELIKEMRSCGFAGDASTIGLVTNML 1230


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  203 bits (516), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+P+ + Y SF++ +CK+G + EAS+  ++M E GL P    Y  +I GYC  G++  AF
Sbjct: 352 VRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAF 411

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            +  EM+K GI P+ +TY LLI+       M  A+ +L+ M  +G++PD +T+N LI+G+
Sbjct: 412 QYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGF 471

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + G  +KAF L D M   G+ P  +TY +LI  L  +    EA  +    + +G+ PD+
Sbjct: 472 GKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDV 531

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + F  +IDG    GN E AF +   M    V PD VT + L++G CR  +++EA  L  +
Sbjct: 532 MTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLK 591

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M   G+KPD +        YN LI G C     + A  L+  M+  G  P+  T+ +   
Sbjct: 592 MLDAGLKPDLV-------LYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRAFAL 644

Query: 306 GI 307
           G 
Sbjct: 645 GF 646



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 172/346 (49%), Gaps = 31/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G++ D   Y   +  +CK   ++ A+ +L +M   G+   +V+ +++IDGYC KG 
Sbjct: 280 MKNYGIKADVIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGR 339

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +  +      + P    Y+  + +L  +  M+EA    +EM E G+ PD   Y I
Sbjct: 340 SDKAINLLNFF---NVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTI 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G+  KAF    EM+  GI P++ TYT LI    K   M  A+ L +  + +G
Sbjct: 397 IIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V FN LIDG    G +++AF LL  M    + PD VTYN L+H    +G   EA+
Sbjct: 457 LIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAK 516

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +L ++ RRG+ PD ++F                             P  +T +AL+ G 
Sbjct: 517 DILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGY 576

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           C+ +  D A  L  +M+  G+ PD   Y +LI G  S      + N
Sbjct: 577 CRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACN 622



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 126/229 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   TY   ++  CK G +  A  +L++M   GL+P  VT+N LIDG+  KG 
Sbjct: 417 MLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGY 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF   D M   G+ P   TYN LIH L+      EA D+L E+  +G+ PD +T+  
Sbjct: 477 LQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTD 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + GN ++AF +   M  + ++P ++T ++L+    +  RM EA+ LF   L  G
Sbjct: 537 VIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAG 596

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD+V++N LI G C+ GN+  A +L+  M      P+  T+     G
Sbjct: 597 LKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRAFALG 645



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 159/336 (47%), Gaps = 31/336 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K   + P      S +  + +  +L+ A  +LE M+  G+   A   +  I+ YC +GN
Sbjct: 210 IKLLNIFPSMGVCNSLLKALLRSHQLDLAWDILEGMQSFGMHLNASILSLFIESYCAEGN 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++  +    EM   GI      Y ++I  L     +  A  +L +M   GI  DS++ + 
Sbjct: 270 IQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSS 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G + KA +L +      ++P +  Y+S +  L K   M+EA + F+     G
Sbjct: 330 VIDGYCKKGRSDKAINLLNFF---NVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFG 386

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  +I G+C  G+I +AF  L EM +  + P   TY  L++  C+ G +  A 
Sbjct: 387 LYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAE 446

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL +M   G+ PD ++FN                            P  +TYNALI  L
Sbjct: 447 YLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSL 506

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                 + A+++L E++ +G++PD  T+  +I+G +
Sbjct: 507 IARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFS 542



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 2/182 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G+ PD+ TY + +  +   G   EA  +L ++   GL P  +T+  +IDG+  KGN
Sbjct: 487 MRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGN 546

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E AF     M ++ + P   T + L++     R+M EA+ +  +M + G+ PD + YN 
Sbjct: 547 FEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNN 606

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  GN   A +L   MI  G  P + T+ +  F L  + + ++  +L  +   K 
Sbjct: 607 LIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHRA--FALGFEKKWVKNPELHASLKLKQ 664

Query: 181 ML 182
           +L
Sbjct: 665 IL 666



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 132/290 (45%), Gaps = 31/290 (10%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            Y+ L+D Y  +  + +A +   E+    I P+    N L+  LL   ++  A D+L+ M
Sbjct: 186 VYSMLVDCYVTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKALLRSHQLDLAWDILEGM 245

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
              G+  ++   ++ I  YC  GN +  + +  EM + GI+  ++ YT +I  L K + +
Sbjct: 246 QSFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCV 305

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             A  L    +  G+  D V  +++IDG+C  G  ++A +LL   +   V P+   Y++ 
Sbjct: 306 KVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLL---NFFNVRPNIFVYSSF 362

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISF---------------------------- 258
           M   C+ G + EA +   +M   G+ PD   +                            
Sbjct: 363 MTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGI 422

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            P+  TY  LI   CK+ +  +AE LL+ M+ +G+ PD  T+  LI+G  
Sbjct: 423 TPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFG 472


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 177/344 (51%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+P+  TY   + G    G+ +E  RMLE+M   G  P   TY +L++  C  G 
Sbjct: 264 MIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGR 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  F D M+ +GI P+ +TY +++H    +  + E  D+L  M   GI P+   +NI
Sbjct: 324 CREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNI 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
             + Y +CG   KA  + ++M  +G+ P  ++Y +LI  L K  R+ +A+  F   + +G
Sbjct: 384 FFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEG 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV+F++L+ G CT    E+   L  EM  + +HP+ V +NT++   C++G+V E +
Sbjct: 444 VTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQ 503

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           RL+D ++  G++PD IS+N                            P   +YN L+ G 
Sbjct: 504 RLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGY 563

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK    D A    R+M+S GITP   TY +++ G+    + +E+
Sbjct: 564 CKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEA 607



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 164/316 (51%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P   TYG  + G   +G L E   +L  M  NG+ P    +N     Y   G 
Sbjct: 334 MIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGI 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M +QG+ P A +Y  LI  L    ++ +A+    +M  +G+ PD + ++ 
Sbjct: 394 IDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSS 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C     +K   L  EM++ GI P ++ + +++  L K+ R++E  +L ++    G
Sbjct: 454 LVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N LIDGHC  G I+ A  LL+ M  + + PD  +YNTL+HG C+ G+++ A 
Sbjct: 514 VRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAY 573

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M   GI P  +       TYN ++ GL + +    A+EL   M++ G   D  TY
Sbjct: 574 SHFRKMLSNGITPGVV-------TYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTY 626

Query: 301 FSLIEGIA---SVDKA 313
             ++ G+     VD+A
Sbjct: 627 NIILNGLCKSNCVDEA 642



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 165/315 (52%), Gaps = 10/315 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV---PTAVTYNTLIDGYCN 57
           M   G  PD+ +Y   + G+C E R EEA  +L  M ++ +    P  V+Y+T+I+G+  
Sbjct: 156 MPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFT 215

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++  ++   EM+ +GI P   TY  +I  L   +    A+ + ++M + G+ P+  T
Sbjct: 216 EGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDT 275

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LI+GY   G  K+   + +EM   G +P   TY SL+  L K  R  EA   F++ +
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMI 335

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P +  +  ++ G+ T G +     LL  M    + P+   +N       + G ++
Sbjct: 336 GKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIID 395

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  + ++M+++G+ PD +S       Y ALI  LCK    D AE    +M+++G+TPD 
Sbjct: 396 KAMDIFNKMRQQGLSPDAVS-------YGALIDALCKLGRVDDAEVKFNQMINEGVTPDI 448

Query: 298 NTYFSLIEGIASVDK 312
             + SL+ G+ +VDK
Sbjct: 449 VVFSSLVYGLCTVDK 463



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 150/289 (51%), Gaps = 7/289 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  +Y + ++G   EG++++   +  +M + G+ P  VTY T+IDG C     + A + 
Sbjct: 201 PNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAV 260

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+  G+ P   TYN LIH  L   K  E   ML+EM   G  P+  TY  L+N  C+
Sbjct: 261 FQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCK 320

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  ++A    D MI KGI+P++ TY  ++   + +  + E   L    +A G+ P+  +
Sbjct: 321 NGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHI 380

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FN     +   G I++A  +  +M +  + PD V+Y  L+   C+ G+V++A    +QM 
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             G+ PD + F       ++L+ GLC   + +  EEL  EM++ GI P+
Sbjct: 441 NEGVTPDIVVF-------SSLVYGLCTVDKWEKVEELFFEMLNVGIHPN 482



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 162/336 (48%), Gaps = 27/336 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  +Y + + G C  G ++EAS++LE M   GL P + +YNTL+ GYC  G ++ A
Sbjct: 513 GVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSA 572

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +S   +M+  GI P   TYN ++H L   ++  EA ++   M   G   D  TYNI++NG
Sbjct: 573 YSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNG 632

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +  KG+Q  ++T+  +I  L K  R  +A  LF    A G++ +
Sbjct: 633 LCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQN 692

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +  +++     G++E   SL   M++    P+    N L+     +G +  A   L 
Sbjct: 693 VVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 752

Query: 245 QMKRRGIKPD------------------HISFNPTRL------TYNALIQGLCKNQEGDL 280
           ++  R    +                  H    P +         +ALI+   K +  D 
Sbjct: 753 KLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIK---KARRIDD 809

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           A  L REM+ KG+TPD  TY +++ G+    + +E+
Sbjct: 810 AYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEA 845



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 150/307 (48%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD+ +YG+ +  +CK GR+++A     QM   G+ P  V +++L+ G C    
Sbjct: 404 MRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDK 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       EM+  GI P    +N ++  L  E +++E   ++  +   G+ PD I+YN 
Sbjct: 464 WEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNT 523

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G   +A  L + M+  G++P   +Y +L+    K  R+  A   F   L+ G
Sbjct: 524 LIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNG 583

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +N ++ G         A  L   M       D  TYN +++G C+   V+EA 
Sbjct: 584 ITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAI 643

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   +  +G++ + I       T+N +I  L K    + A +L   + + G+  +  TY
Sbjct: 644 KMFQNLCSKGLQLNII-------TFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTY 696

Query: 301 FSLIEGI 307
             ++E +
Sbjct: 697 RLVVENL 703



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 159/322 (49%), Gaps = 18/322 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+  TY   +   C+ G LE        + + G     +  N L++G C+   +  A 
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAM 149

Query: 66  S-FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV---PDSITYNIL 121
                 M + G MP   +YN+L+  L  E++  EA ++L  M +  +    P+ ++Y+ +
Sbjct: 150 DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTV 209

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+   G   K ++L  EM+ +GI P ++TYT++I  L K      A+ +F+  +  G+
Sbjct: 210 INGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGV 269

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P+I  +N LI G+ + G  +    +L+EM      P+  TY +L++  C+ G+  EAR 
Sbjct: 270 KPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARF 329

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDD-- 297
             D M  +GIK       P+  TY  ++ G     +G L+E  +LL  MV+ GI+P+   
Sbjct: 330 FFDSMIGKGIK-------PSVTTYGIMLHGYA--TKGALSEMHDLLNLMVANGISPNHHI 380

Query: 298 -NTYFSLIEGIASVDKAAESSN 318
            N +FS       +DKA +  N
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFN 402



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P+   + + +  +CKEGR+ E  R+++ ++  G+ P  ++YNTLIDG+C  G 
Sbjct: 474 MLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGT 533

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + MV  G+ P + +YN L+H      ++  A    ++M   GI P  +TYN 
Sbjct: 534 IDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNT 593

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G  +     +A  L+  MI+ G +  + TY  ++  L K N + EA ++F+N  +KG
Sbjct: 594 ILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKG 653

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I+ FN +I      G  E A  L   +    +  + VTY  ++     +G +EE  
Sbjct: 654 LQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFD 713

Query: 241 RLLDQMKRRGIKPD 254
            L   M++ G  P+
Sbjct: 714 SLFSAMEKNGTAPN 727



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 139/328 (42%), Gaps = 35/328 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D YTY   ++G+CK   ++EA +M + +   GL    +T+N +I      G 
Sbjct: 614 MINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGR 673

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      +   G++    TY L++  L+ E  + E D +   M + G  P+S   N 
Sbjct: 674 KEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNA 733

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS------------------- 161
           L+      G+  +A +   ++  +       T + LI + S                   
Sbjct: 734 LVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILN 793

Query: 162 ---------KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
                    K  R+ +A  LF   L KG+ PD+V +N ++ G    G    A  L   M 
Sbjct: 794 EANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMI 853

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
             +   +  TYN +++G C+   V+EA ++   +  +G++ + I       T+N +I  L
Sbjct: 854 NSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNII-------TFNIMIGAL 906

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTY 300
            K    + A +L   + + G+ PD  TY
Sbjct: 907 LKGGRKEDAMDLFAAIPANGLVPDVVTY 934



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 145/309 (46%), Gaps = 37/309 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + G+  +  TY   V  + +EG LEE   +   M++NG  P +   N L+    ++G+
Sbjct: 684 IPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGD 743

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------------HELLME--------- 93
           +  A ++  ++ ++     AST ++LI                  + +L E         
Sbjct: 744 ISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKK 803

Query: 94  -RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
            R++ +A  + +EM  KG+ PD +TYN +++G  + G   +A  L+  MI+   Q  + T
Sbjct: 804 ARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYT 863

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y  ++  L K N + EA ++F++  +KG+  +I+ FN +I      G  E A  L   + 
Sbjct: 864 YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIP 923

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              + PD VTY  +      +G +EE   L   M++ G   D      +RL  NAL++ L
Sbjct: 924 ANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLD------SRLL-NALVRRL 976

Query: 273 CKNQEGDLA 281
              Q GD++
Sbjct: 977 L--QRGDIS 983



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 88/191 (46%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           K  R+++A  +  +M   GL P  VTYNT++ G    G    A      M+         
Sbjct: 803 KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY 862

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TYN++++ L     + EA  M + +  KG+  + IT+NI+I    + G  + A  L   +
Sbjct: 863 TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 922

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
              G+ P ++TY  +   L ++  + E D LF      G   D  + NAL+      G+I
Sbjct: 923 PANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDI 982

Query: 202 ERAFSLLKEMD 212
            RA + L ++D
Sbjct: 983 SRAGAYLSKLD 993



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 74/170 (43%)

Query: 7    QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            Q + YTY   ++G+CK   ++EA +M + +   GL    +T+N +I      G  E A  
Sbjct: 858  QMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMD 917

Query: 67   FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
                +   G++P   TY L+   L+ E  + E D +   M + G   DS   N L+    
Sbjct: 918  LFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLL 977

Query: 127  RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            + G+  +A +   ++  K       T + LI + S+      A  L E +
Sbjct: 978  QRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSLPEKY 1027



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDG-------HCTNGNIERAFSLLKEMDR---MKVH 217
           +A +LF+  L       +V FN L+           T    E   SL   M R   +KV 
Sbjct: 32  DALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIKVA 91

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P+  TY+ L+   CR G +E        + + G + DHI         N L+ GLC  + 
Sbjct: 92  PNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHI-------VINQLLNGLCDGKR 144

Query: 278 -GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            G+  + LL+ M   G  PD  +Y  L++G+ +  +A E+
Sbjct: 145 VGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEA 184



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%)

Query: 3    SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
            S+G+Q +  T+   +  + K GR E+A  +   +  NGLVP  VTY  + +    +G+LE
Sbjct: 889  SKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLE 948

Query: 63   MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                    M K G    +   N L+  LL    +  A   L ++ EK    ++ T + LI
Sbjct: 949  EFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELI 1008

Query: 123  NGYCR 127
            + + R
Sbjct: 1009 SLFSR 1013


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ R  +P+   Y + + G+CK+  + EA  +  +M   G+ P  +TY+TLI G+C  G 
Sbjct: 141 IEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQ 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF   +EM+ + I P   TY +L+  L  E K+ EA ++L  M ++G+ P+ ++YN 
Sbjct: 201 LMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNT 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  + A  +   M+ KG+ P + +Y  +I  L K  R+ EA  L    L K 
Sbjct: 261 LMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKN 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+P+ V +++LIDG C  G I  A  LLKEM       D VTY +L+   C+   +++A 
Sbjct: 321 MVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKAT 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +MK RGI+P+       + TY ALI GLCK      A++L + ++ KG   +  TY
Sbjct: 381 ALFMKMKERGIQPN-------KYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTY 433

Query: 301 FSLIEGIA 308
             +I G+ 
Sbjct: 434 NVMISGLC 441



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 169/306 (55%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q D  +Y + ++G+CK G    A ++L  +++    P  V YNT+IDG C    + 
Sbjct: 108 AQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVN 167

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+    EM  +GI P   TY+ LI+   +  +++EA  +L EM  K I P+  TY IL+
Sbjct: 168 EAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILM 227

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G  K+A +L   M  +G++P +++Y +L+        +  A Q+F   + KG+ 
Sbjct: 228 DALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVN 287

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +N +ID  C +  ++ A +LL+E+    + P+ VTY++L+ G C+ G++  A  L
Sbjct: 288 PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDL 347

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L +M  RG   D +       TY +L+  LCKNQ  D A  L  +M  +GI P+  TY +
Sbjct: 348 LKEMYHRGQPADVV-------TYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTA 400

Query: 303 LIEGIA 308
           LI+G+ 
Sbjct: 401 LIDGLC 406



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 174/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PD +T    ++  C  G++  +  +L ++ + G  P  +T NTL+ G C KG 
Sbjct: 36  MQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGE 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ +  F D++V QG      +Y  L++ L    +   A  +L+ + ++   P+ + YN 
Sbjct: 96  VKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNT 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+     +A+ L+ EM  +GI P ++TY++LI+      +++EA  L    + K 
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN 215

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +  L+D  C  G ++ A +LL  M +  V P+ V+YNTLM G C  G+V+ A+
Sbjct: 216 INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAK 275

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   M ++G+       NP   +YN +I  LCK++  D A  LLRE++ K + P+  TY
Sbjct: 276 QMFHTMVQKGV-------NPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTY 328

Query: 301 FSLIEGIASVDKAAES 316
            SLI+G   + +   +
Sbjct: 329 SSLIDGFCKLGRITSA 344



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 165/328 (50%), Gaps = 47/328 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+ YTY   +  +CKEG+++EA  +L  M + G+ P  V+YNTL+DGYC  G 
Sbjct: 211 MILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGE 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV++G+ P   +YN++I  L   +++ EA ++L+E+  K +VP+++TY+ 
Sbjct: 271 VQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSS 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG----------------------------------- 145
           LI+G+C+ G    A  L  EM H+G                                   
Sbjct: 331 LIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 390

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           IQP   TYT+LI  L K  R   A +LF++ L KG   ++  +N +I G C  G ++ A 
Sbjct: 391 IQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEAL 450

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           ++  +M+     PD VT+  ++     + + ++A +LL +M    I  D + F       
Sbjct: 451 AMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM----IAKDLLRFRD----- 501

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGI 293
                G     E D AE+LL EM++KG+
Sbjct: 502 ---FHGERSPNENDKAEKLLHEMIAKGL 526


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/296 (39%), Positives = 171/296 (57%), Gaps = 8/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +P+  +YGS ++ +CK+G++ EA  +L  M   G++P A  YN LIDG C  G 
Sbjct: 373 MEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGK 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A  F DEM K GI  T  TYN LI  L    K+ EA++M   +   G  PD ITYN 
Sbjct: 433 LREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNS 492

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY   GN++K   L++ M   G++PT+ T+  LI   SK+   ++ + LF   L   
Sbjct: 493 LISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLK-ETLFNEMLQMN 551

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++NA+I  +   G++++AFSL KEM  M V PD  TYN+L+ G  ++GK+ E +
Sbjct: 552 LSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETK 611

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L+D MK +G+ P+         TY+ LIQG C  ++ + A    REM+  G  P+
Sbjct: 612 DLVDDMKAKGLIPEAD-------TYSLLIQGHCDLKDFNGAYVWYREMLENGFLPN 660



 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 173/305 (56%), Gaps = 7/305 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+ D+YT    ++G+CKEG++E+A  +L+ + E+GLVP  V YNT+++GYC  G+++ 
Sbjct: 236 KGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDR 295

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    ++M  +G+ P    +N +I +    + + +A++ +K+M  KGI P   TYNILI+
Sbjct: 296 AILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILID 355

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY R     + F + +EM   G +P +++Y SLI  L K  +++EA+ +  + + +G+LP
Sbjct: 356 GYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLP 415

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +  ++N LIDG CT G +  A     EM +  +    VTYN+L+ G C+ GK++EA  + 
Sbjct: 416 NANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMF 475

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +   G  PD I       TYN+LI G           EL   M   G+ P  NT+  L
Sbjct: 476 FLITSTGHCPDVI-------TYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPL 528

Query: 304 IEGIA 308
           I G +
Sbjct: 529 ISGCS 533



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 189/345 (54%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK R V P+ + Y   + G+CKE R+ +A ++  +M    LVP  VT+NTLIDGYC  G 
Sbjct: 92  MKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGE 151

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A   R+ M K+ + P+  T+N L+  L   R++ EA  ML E+   G VPD  TY+I
Sbjct: 152 VDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSI 211

Query: 121 LINGYCRCGN-AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           + +G  +  + A  A  L+ E I KG++    T + L+  L K+ ++ +A+++ ++ +  
Sbjct: 212 IFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEH 271

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P  V++N +++G+C  G+++RA   +++M+   + P+ + +N+++   C    +++A
Sbjct: 272 GLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKA 331

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
              + +M  +GI P   ++N                            P  ++Y +LI  
Sbjct: 332 EEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINC 391

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LCK+ +   AE +LR+MV +G+ P+ N Y  LI+G  +V K  E+
Sbjct: 392 LCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREA 436



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 177/320 (55%), Gaps = 12/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+SRG++P+   + S +   C+   +++A   +++M   G+ P+  TYN LIDGY     
Sbjct: 303 MESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCV 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               F   +EM + G  P   +Y  LI+ L  + K++EA+ +L++M  +G++P++  YN+
Sbjct: 363 FSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNM 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  ++A    DEM   GI  T++TY SLI  L K  ++ EA+++F    + G
Sbjct: 423 LIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTG 482

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N+LI G+   GN ++   L + M ++ + P   T++ L+ G  ++G ++   
Sbjct: 483 HCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG-IKLKE 541

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            L ++M +  + PD       R+ YNA+I   C  + G +  A  L +EMV  G+ PD+ 
Sbjct: 542 TLFNEMLQMNLSPD-------RVVYNAMIH--CYQETGHVQKAFSLQKEMVDMGVRPDNK 592

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY SLI G     K +E+ +
Sbjct: 593 TYNSLILGHLKEGKLSETKD 612



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 176/338 (52%), Gaps = 29/338 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V+P   T+ S +SG+CK  R+EEA  ML ++K NG VP   TY+ + DG     +
Sbjct: 162 MKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDD 221

Query: 61  -LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A     E + +G+     T ++L++ L  E K+ +A+++LK + E G+VP  + YN
Sbjct: 222 GAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYN 281

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            ++NGYC+ G+  +A    ++M  +G++P  + + S+I    +   + +A++  +  + K
Sbjct: 282 TIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGK 341

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P +  +N LIDG+       R F +L+EM+     P+ ++Y +L++  C+ GK+ EA
Sbjct: 342 GIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEA 401

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             +L  M  RG+ P+   +N                             T +TYN+LI+G
Sbjct: 402 EMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKG 461

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           LCK  +   AEE+   + S G  PD  TY SLI G ++
Sbjct: 462 LCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSN 499



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 166/342 (48%), Gaps = 43/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P        V  + +  + +    + ++M   G  P  + Y   +      G+
Sbjct: 22  MRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGD 81

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A    + M ++ ++P    YN+LI  L  E+++ +A+ +  EM  + +VP+ +T+N 
Sbjct: 82  LKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNT 141

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    A  L + M  + ++P+++T+ SL+  L K  R+ EA  +       G
Sbjct: 142 LIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNG 201

Query: 181 MLPD----IVMFNA--------------------------------LIDGHCTNGNIERA 204
            +PD     ++F+                                 L++G C  G +E+A
Sbjct: 202 FVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKA 261

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +LK +    + P EV YNT+++G C+ G ++ A   ++QM+ RG++P+ I+F      
Sbjct: 262 EEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAF------ 315

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            N++I   C+ Q  D AEE +++MV KGI P   TY  LI+G
Sbjct: 316 -NSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDG 356



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 131/251 (52%), Gaps = 1/251 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+     TY S + G+CK G+L+EA  M   +   G  P  +TYN+LI GY N GN
Sbjct: 443 MSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGN 502

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +      + M K G+ PT +T++ LI     E   ++ + +  EM +  + PD + YN 
Sbjct: 503 SQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLK-ETLFNEMLQMNLSPDRVVYNA 561

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G+ +KAFSL  EM+  G++P   TY SLI    K+ ++ E   L ++  AKG
Sbjct: 562 MIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKG 621

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   ++ LI GHC   +   A+   +EM      P+    N L  G  + G+++EA+
Sbjct: 622 LIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQ 681

Query: 241 RLLDQMKRRGI 251
            +  +M   G+
Sbjct: 682 SICSEMIANGM 692



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 134/255 (52%), Gaps = 11/255 (4%)

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D M ++G +P+     +++  L+  +K     D+ KEM   G  PD + Y   +    + 
Sbjct: 20  DFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKL 79

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G+ K A  L + M  + + P +  Y  LI  L K+ R+ +A++LF     + ++P+ V F
Sbjct: 80  GDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTF 139

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LIDG+C  G ++ A  L + M + KV P  +T+N+L+ G C+  ++EEAR +L+++K 
Sbjct: 140 NTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKC 199

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEG-DLAEELLREMVSKGITPDDNTYFSLIEGI 307
            G  PD         TY+ +  GL K+ +G   A +L RE + KG+  D+ T   L+ G+
Sbjct: 200 NGFVPDG-------FTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGL 252

Query: 308 ---ASVDKAAESSNS 319
                V+KA E   S
Sbjct: 253 CKEGKVEKAEEVLKS 267



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           L+ V S+     +  +L++    +G LP       +++    +   +    L KEM  + 
Sbjct: 2   LLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLG 61

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
             PD++ Y   M    + G ++ A  L + MKRR + P+          YN LI GLCK 
Sbjct: 62  FRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPN-------VFVYNVLIGGLCKE 114

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +    AE+L  EM  + + P+  T+ +LI+G
Sbjct: 115 KRIRDAEKLFGEMSVRNLVPNRVTFNTLIDG 145


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++PD +TY S +S +C  GR  +ASR+L  M E  + P  VT++ LID +  +G 
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+K+ I P   TY+ LI+   M  ++ EA  M + M  K   P+ +TY+ 
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++   L  EM  +G+    +TYT+LI    +      A  +F+  ++ G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N L+DG C NG + +A  + + + R  + PD  TYN ++ G C+ GKVE+  
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+ P+ I+       YN +I G C+    + A+ LL++M   G  P+  TY
Sbjct: 524 ELFCNLSLKGVSPNVIA-------YNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTY 576

Query: 301 FSLIEG 306
            +LI  
Sbjct: 577 NTLIRA 582



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 170/315 (53%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QPD  TYG+ V+G+CK G ++ A  +L++M++  +    V YNT+IDG C   +
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M E+ I P+ +T++ 
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEMI + I P + TY+SLI      +R+ EA  +FE  ++K 
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 393

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V ++ LI G C    +E    L +EM +  +  + VTY TL+HG  +    + A+
Sbjct: 394 CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 453

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  QM   G+       +P  LTYN L+ GLCKN +   A  +   +    + PD  TY
Sbjct: 454 MVFKQMVSVGV-------HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 506

Query: 301 FSLIEGIASVDKAAE 315
             +IEG+    K  +
Sbjct: 507 NIMIEGMCKAGKVED 521



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 177/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD++T+ + + G+    +  EA  +++QM + G  P  VTY T+++G C +G+
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A S   +M K  I      YN +I  L   + M +A ++  EM  KGI PD  TY+ 
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS 298

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L  +MI + I P ++T+++LI    K+ +++EA++L++  + + 
Sbjct: 299 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 358

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +++LI+G C +  ++ A  + + M      P+ VTY+TL+ G C+  +VEE  
Sbjct: 359 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGM 418

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RG+  + +       TY  LI G  + ++ D A+ + ++MVS G+ P+  TY
Sbjct: 419 ELFREMSQRGLVGNTV-------TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 471

Query: 301 FSLIEGIASVDKAAES 316
             L++G+    K A++
Sbjct: 472 NILLDGLCKNGKLAKA 487



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 169/315 (53%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  D YTY  F++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+  LIH L +  K  EA  ++ +M ++G  PD +TY  
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT 228

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   A SL  +M    I+  ++ Y ++I  L K   M +A  LF     KG
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG 288

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +++LI   C  G    A  LL +M   K++P+ VT++ L+    ++GK+ EA 
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M +R I PD         TY++LI G C +   D A+ +   M+SK   P+  TY
Sbjct: 349 KLYDEMIKRSIDPD-------IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 401

Query: 301 FSLIEGIASVDKAAE 315
            +LI+G     +  E
Sbjct: 402 STLIKGFCKAKRVEE 416



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 133/254 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S ++G C   RL+EA  M E M      P  VTY+TLI G+C    
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM ++G++    TY  LIH     R    A  + K+M   G+ P+ +TYNI
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G   KA  + + +    ++P + TY  +I  + K  ++ +  +LF N   KG
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +N +I G C  G+ E A SLLK+M      P+  TYNTL+  R R G  E + 
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+  G   D
Sbjct: 594 ELIKEMRSCGFAGD 607



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 161/324 (49%), Gaps = 32/324 (9%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           ++++A  +   M ++   P+ V +N L+         E+  S  ++M   GI     TY+
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           + I+      ++  A  +L +M + G  PD +T + L+NGYC       A +L D+M+  
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P   T+T+LI  L   N+  EA  L +  + +G  PD+V +  +++G C  G+I+ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
            SLLK+M++ K+  D V YNT++ G C+   +++A  L  +M  +GI+PD  ++      
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGIT 294
                                 NP  +T++ALI    K  EG L  AE+L  EM+ + I 
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK--EGKLVEAEKLYDEMIKRSID 360

Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
           PD  TY SLI G    D+  E+ +
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKH 384



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 65/118 (55%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PD YTY   + GMCK G++E+   +   +   G+ P  + YNT+I G+C KG+ E A 
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEAD 558

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           S   +M + G +P + TYN LI   L +     + +++KEM   G   D+ T  ++ N
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 616



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           LS   ++ +A  LF + +     P IV FN L+         E   SL ++M  + +  D
Sbjct: 58  LSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHD 117

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             TY+  ++  CR+ ++  A  +L +M + G +PD +       T ++L+ G C ++   
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIV-------TLSSLLNGYCHSKRIS 170

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A  L+ +MV  G  PD  T+ +LI G+   +KA+E+
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV P+   Y + +SG C++G  EEA  +L++MKE+G +P + TYNTLI      G+ E 
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM   G    AST  L+ + L
Sbjct: 592 SAELIKEMRSCGFAGDASTIGLVTNML 618


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 167/332 (50%), Gaps = 30/332 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKGNLEMA 64
           V+PD  TY + + G+CK GR EE   ++E+M+     +P  VTYN LIDGYC    +E A
Sbjct: 376 VEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAA 435

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M K G+ P   T N L+  +    ++  A +   EM  KG+  +++TY  LI  
Sbjct: 436 RELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRA 495

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C   N +KA  L DEM+  G  P  + Y +LI  LS+  ++  A  +       G  PD
Sbjct: 496 FCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPD 555

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV FN LI+G C    ++ A+ +LKEM+   + PD VTYNTL+    + G    A RL+ 
Sbjct: 556 IVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMK 615

Query: 245 QMKRRGIKPDHISFN-----------------------------PTRLTYNALIQGLCKN 275
           +M + G+ P  +++                              P  + YN LI  LC+ 
Sbjct: 616 KMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRK 675

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            + DLA  L+ +M  KG+ P+ NT+ ++ +G+
Sbjct: 676 NQVDLALSLMDDMKVKGVKPNTNTFNAMFKGL 707



 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 170/316 (53%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+  T  + V GMCK GR+  A     +M+  GL   AVTY  LI  +CN  N
Sbjct: 442 MNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNN 501

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM++ G  P A  Y  LI  L    K+  A  +L +M E G  PD +++N+
Sbjct: 502 IEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNV 561

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+CR     +A+ +  EM + GI+P  +TY +LI   SK      A +L +  + +G
Sbjct: 562 LINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEA 239
           ++P +V + ALI  +C NGN++ A  + ++M    KV P+ V YN L++  CR+ +V+ A
Sbjct: 622 LVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLA 681

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D MK +G+KP+         T+NA+ +GL +      A EL+  M      PD  T
Sbjct: 682 LSLMDDMKVKGVKPN-------TNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYIT 734

Query: 300 YFSLIEGIASVDKAAE 315
              L E +++V + A+
Sbjct: 735 MEILTEWLSAVGETAK 750



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 157/340 (46%), Gaps = 48/340 (14%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+S      +S +C+ GR + A  +L  + + G V  A + N L+         +   
Sbjct: 266 VFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMN 325

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG------------------ 107
           +   EM +  I P   T+ +LI+ L   R++ EA ++ ++M                   
Sbjct: 326 TLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNT 385

Query: 108 -----------EKGI------------VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                      E+G+            +P+++TYN LI+GYC+    + A  L D+M   
Sbjct: 386 LIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD 445

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+ P ++T  +L+  + K  R+  A + F     KG+  + V + ALI   C   NIE+A
Sbjct: 446 GVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKA 505

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L  EM      PD + Y TL+ G  + GK++ A  +L +MK  G  PD +SF      
Sbjct: 506 MELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSF------ 559

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            N LI G C+  + D A E+L+EM + GI PD  TY +LI
Sbjct: 560 -NVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLI 598



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 160/323 (49%), Gaps = 21/323 (6%)

Query: 8   PDSYTYGSFVSGMCKEGRL------EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           P+S T     S + K  ++      EE   ++ +  E+ + P ++    LI   C  G  
Sbjct: 227 PNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRT 286

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A+     ++K G +  A++ N L+  L   R+    + +L EM E  I P+ +T+ IL
Sbjct: 287 DRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGIL 346

Query: 122 INGYCRCGNAKKAFSLHDEMIHKG------IQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           IN  C+     +A  + ++M + G      ++P ++TY +LI  L K  R  E   L E 
Sbjct: 347 INHLCKFRRVDEALEVFEKM-NGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVER 405

Query: 176 FLAKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             ++   +P+ V +N LIDG+C    IE A  L  +M++  V P+ VT NTL+ G C+ G
Sbjct: 406 MRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHG 465

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           ++  A    ++M+ +G+K + +       TY ALI+  C     + A EL  EM+  G +
Sbjct: 466 RINGAVEFFNEMQGKGLKGNAV-------TYTALIRAFCNVNNIEKAMELFDEMLEAGCS 518

Query: 295 PDDNTYFSLIEGIASVDKAAESS 317
           PD   Y++LI G++   K   +S
Sbjct: 519 PDAIVYYTLISGLSQAGKLDRAS 541


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P+  TY S +S +C  GR  +ASR+L  M E  + P   T++ LID +  +G 
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEMVK+ I P+  TY+ LI+   M  ++ EA  M + M  K   PD +TYN 
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++   +  EM  +G+    +TY  LI  L +      A ++F+  ++ G
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N L+DG C NG +E+A  + + + R K+ P   TYN ++ G C+ GKVE+  
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD ++       YN +I G C+    + A+ L +EM   G  P+   Y
Sbjct: 522 DLFCNLSLKGVKPDVVA-------YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574

Query: 301 FSLIEG 306
            +LI  
Sbjct: 575 NTLIRA 580



 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 177/304 (58%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QP++ T+ + + G+    +  EA  ++++M   G  P  VTY  +++G C +G+ ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F+  ++M +  + P    YN +I  L   + M +A ++ KEM  KGI P+ +TY+ LI+ 
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G    A  L  +MI + I P + T+++LI    K+ +++EA++L++  + + + P 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +++LI+G C +  ++ A  + + M      PD VTYNTL+ G C+  +VEE   +  
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M +RG+  + +       TYN LIQGL +  + D+A+E+ +EMVS G+ P+  TY +L+
Sbjct: 421 EMSQRGLVGNTV-------TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473

Query: 305 EGIA 308
           +G+ 
Sbjct: 474 DGLC 477



 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 175/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G QPD  TYG  V+G+CK G  + A  +L +M++  L P  + YNT+IDG C   +
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M E+ I PD  T++ 
Sbjct: 272 MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEM+ + I P+++TY+SLI      +R+ EA Q+FE  ++K 
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N LI G C    +E    + +EM +  +  + VTYN L+ G  + G  + A+
Sbjct: 392 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 451

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +  +M   G+ P+ +++N                            PT  TYN +I+G+
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + +   +L   +  KG+ PD   Y ++I G  
Sbjct: 512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 173/315 (54%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  + YTY   ++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 107 MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+M   G  P   T+N LIH L +  K  EA  ++  M  KG  PD +TY +
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   AF+L ++M    ++P +L Y ++I  L K   M +A  LF+    KG
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +++LI   C  G    A  LL +M   K++PD  T++ L+    ++GK+ EA 
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAE 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M +R I       +P+ +TY++LI G C +   D A+++   MVSK   PD  TY
Sbjct: 347 KLYDEMVKRSI-------DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 399

Query: 301 FSLIEGIASVDKAAE 315
            +LI+G     +  E
Sbjct: 400 NTLIKGFCKYKRVEE 414



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P   TY S ++G C   RL+EA +M E M      P  VTYNTLI G+C    
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM ++G++    TYN+LI  L        A ++ KEM   G+ P+ +TYN 
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  +KA  + + +    ++PT+ TY  +I  + K  ++ +   LF N   KG
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I G C  G+ E A +L KEM      P+   YNTL+  R R G  E + 
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+  G   D
Sbjct: 592 ELIKEMRSCGFAGD 605



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 156/294 (53%), Gaps = 7/294 (2%)

Query: 23  EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST 82
           E +L++A  +  +M ++   P+ + ++ L+         ++  S  ++M   GI     T
Sbjct: 59  ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 118

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y++LI+      ++  A  +L +M + G  P+ +T + L+NGYC      +A +L D+M 
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             G QP  +T+ +LI  L   N+  EA  L +  +AKG  PD+V +  +++G C  G+ +
Sbjct: 179 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            AF+LL +M++ K+ P  + YNT++ G C+   +++A  L  +M+ +GI+P+ +      
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV------ 292

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY++LI  LC       A  LL +M+ + I PD  T+ +LI+      K  E+
Sbjct: 293 -TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 7/257 (2%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   EMVK    P+   ++ L+  +    K      + ++M   GI  +  TY+I
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +CR      A ++  +M+  G +P ++T +SL+       R+ EA  L +     G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V FN LI G   +     A +L+  M      PD VTY  +++G C++G  + A 
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M++  ++P         L YN +I GLCK +  D A  L +EM +KGI P+  TY
Sbjct: 242 NLLNKMEQGKLEPG-------VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294

Query: 301 FSLIEGIASVDKAAESS 317
            SLI  + +  + +++S
Sbjct: 295 SSLISCLCNYGRWSDAS 311



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 7/218 (3%)

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
           L E K+ +A  +  EM +    P  I ++ L++   +        SL ++M + GI    
Sbjct: 57  LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            TY+ LI    +++++  A  +    +  G  P+IV  ++L++G+C +  I  A +L+ +
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M      P+ VT+NTL+HG     K  EA  L+D+M  +G +PD +       TY  ++ 
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLV-------TYGVVVN 229

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           GLCK  + DLA  LL +M    + P    Y ++I+G+ 
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 267



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++P  YTY   + GMCK G++E+   +   +   G+ P  V YNT+I G+C KG+ E A 
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           +   EM + G +P +  YN LI   L +     + +++KEM   G   D+ T  ++ N
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 614



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+PD   Y + +SG C++G  EEA  + ++MKE+G +P +  YNTLI      G+ E 
Sbjct: 530 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREA 589

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM   G    AST  L+ + L
Sbjct: 590 SAELIKEMRSCGFAGDASTIGLVTNML 616


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 169/316 (53%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + V G+CK  RL+EA  ++E M E G  PT VTYN++I G+C    
Sbjct: 100 MLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARR 159

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F ++MV +G  P   TY  LI      R +    ++L E+  +G  PD +TY+ 
Sbjct: 160 VDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYST 219

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G  + A  + +EM      PT +TY SLI    +   M EA +L    +   
Sbjct: 220 VIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDK 276

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +  L+   C  G ++ A+ L ++M   K+ PD VT+ +L+ G C +G++E+A 
Sbjct: 277 CAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDAL 336

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+++ RRG         PT  TYN ++ G CK  +   AEEL+ +  S+G  P+  TY
Sbjct: 337 ELLEEITRRGCP-------PTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTY 389

Query: 301 FSLIEGIASVDKAAES 316
             L+ G     +  ++
Sbjct: 390 NILVAGCCRAGRTDQA 405



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 10/305 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+ T    V  +C   R+++A  ++E+M   G+   A+TY+ L+DG C    L+ A + 
Sbjct: 72  PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 131

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            + M ++G  PT  TYN +I      R++ EA   +++M  +G  PD ITY  LI G+C+
Sbjct: 132 VETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCK 191

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
             +  +   L  E+  +G  P ++TY+++I  L K  R+ +A  +FE        P  + 
Sbjct: 192 SRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAIT 248

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI G+C  G+++ A  LL +M   K  PD VTY TLM   C+ G++++A  L  QM 
Sbjct: 249 YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMV 308

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              + PD ++F        +L+ GLC     + A ELL E+  +G  P   TY  +++G 
Sbjct: 309 ANKLSPDVVTFT-------SLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 361

Query: 308 ASVDK 312
              ++
Sbjct: 362 CKANQ 366



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 155/301 (51%), Gaps = 10/301 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TY   V G+ K  RL +A ++L++M     VP   T   ++   C    ++ A   
Sbjct: 37  PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 96

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            +EM+ +G+   A TY+ L+  L    ++ EA  +++ M E+G  P  +TYN +I G+CR
Sbjct: 97  VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                +A    ++M+ +G  P ++TYT+LI    K   +    +L      +G  PDIV 
Sbjct: 157 ARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT 216

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ +IDG C  G +  A  + +EM      P  +TYN+L+ G CR G ++EA RLL +M 
Sbjct: 217 YSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 273

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                PD +       TY  L+   CK    D A EL ++MV+  ++PD  T+ SL++G+
Sbjct: 274 DDKCAPDVV-------TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 326

Query: 308 A 308
            
Sbjct: 327 C 327



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 160/305 (52%), Gaps = 11/305 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   + G+C+ GRL  A  +  QM  +   P  +TY  L+ G      L  A   
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMN-DAHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EMV    +P  +T  +++  L +  ++ +A ++++EM  +G+  ++ITY+ L++G C+
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
           C    +A +L + M  +G  PT++TY S+I    +  R+ EA    E  +A+G  PDI+ 
Sbjct: 122 CERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIIT 181

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + ALI G C + ++ R   LL E+ R    PD VTY+T++ G C+ G++ +A  + ++M 
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM- 240

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                    S  PT +TYN+LI G C+  + D A  LL +MV     PD  TY +L+   
Sbjct: 241 ---------SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAF 291

Query: 308 ASVDK 312
             + +
Sbjct: 292 CKMGR 296



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 2/242 (0%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TY + +S  CK GRL++A  + +QM  N L P  VT+ +L+DG C +G +E A   
Sbjct: 279 PDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALEL 338

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            +E+ ++G  PT  TYN ++       ++ +A++++ +   +G VP+++TYNIL+ G CR
Sbjct: 339 LEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCR 398

Query: 128 CGNAKKAFSLHDEMIHKGIQ-PTMLTYTSLIF-VLSKQNRMIEADQLFENFLAKGMLPDI 185
            G   +A    D++  +G   PT +   ++I   L +  R  +A Q +E  + +G +P  
Sbjct: 399 AGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAA 458

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             F  ++   C     ++A  LL+EM +    P   T + ++   CR G +++A  L  +
Sbjct: 459 ATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASE 518

Query: 246 MK 247
           ++
Sbjct: 519 LR 520



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 2/143 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVT-YNTLIDGYCNK 58
            +SRG  P++ TY   V+G C+ GR ++A + L+Q+  E G  PT+V  Y  ++D  C  
Sbjct: 377 FRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRD 436

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G  + A  F +EM+++G +P A+T+  ++  L    +  +A ++L+EM + G  P   T 
Sbjct: 437 GRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTC 496

Query: 119 NILINGYCRCGNAKKAFSLHDEM 141
           + +++ YCR G  +KA  L  E+
Sbjct: 497 DAVVSAYCRAGMIQKADELASEL 519


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 181/316 (57%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD     S + G CK G+  +A+R++E ++++G VP  +TYN LI G C+ G 
Sbjct: 110 MVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGR 169

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +MV++G  P+  T+N+LI+ L  +  +  A D+L++M + G  P+S++YN 
Sbjct: 170 WMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNP 229

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+    ++A     +M  +G  P ++TY +L+  L K  ++  A +L     +KG
Sbjct: 230 LLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKG 289

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  ++A  LL EM    + PD +TY++L+ G  R+GKV+EA 
Sbjct: 290 CSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAI 349

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +    ++  G+KP+ I       TYNA++ GLCK ++ D A + L  MV +G  P + +Y
Sbjct: 350 KFFHDLEVLGVKPNAI-------TYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASY 402

Query: 301 FSLIEGIASVDKAAES 316
             LIEG+A    A E+
Sbjct: 403 TILIEGLAYEGLAKEA 418



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 153/290 (52%), Gaps = 7/290 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD  TY   +SGMC  GR  +A ++L  M   G  P+ VT+N LI+  C KG L  A
Sbjct: 149 GAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRA 208

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++M K G  P + +YN L+H    E+KM  A + L +M  +G  PD +TYN L+  
Sbjct: 209 IDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTA 268

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A  L +++  KG  P ++TY ++I  LSK  +  +A +L +   AKG+ PD
Sbjct: 269 LCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPD 328

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ +++L+ G    G ++ A     +++ + V P+ +TYN +M G C+  K + A   L 
Sbjct: 329 IITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLA 388

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            M +RG K       PT  +Y  LI+GL        A ELL E+  +G+ 
Sbjct: 389 YMVQRGCK-------PTEASYTILIEGLAYEGLAKEALELLNELCLRGVV 431



 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 136/258 (52%), Gaps = 7/258 (2%)

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G LE  F F + MV +G +P       LI       K  +A  +++ + + G VPD ITY
Sbjct: 98  GELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITY 157

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N+LI+G C  G    A  L  +M+ +G  P+++T+  LI  L ++  +  A  + E    
Sbjct: 158 NVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPK 217

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G  P+ + +N L+ G C    +ERA   L +M     +PD VTYNTL+   C+ GKV+ 
Sbjct: 218 HGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDA 277

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  LL+Q+  +G        +P  +TYN +I GL K  + D A +LL EM +KG+ PD  
Sbjct: 278 AVELLNQLSSKGC-------SPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDII 330

Query: 299 TYFSLIEGIASVDKAAES 316
           TY SL+ G++   K  E+
Sbjct: 331 TYSSLVGGLSREGKVDEA 348



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 7/231 (3%)

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           + +L+   ++ E    L+ M  +G +PD I    LI G+C+ G  +KA  + + +   G 
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGA 150

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P ++TY  LI  +    R ++A++L  + + +G  P +V FN LI+  C  G + RA  
Sbjct: 151 VPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAID 210

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           +L++M +    P+ ++YN L+HG C++ K+E A   L +M  RG  PD +       TYN
Sbjct: 211 VLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIV-------TYN 263

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L+  LCK+ + D A ELL ++ SKG +P   TY ++I+G++ V K  +++
Sbjct: 264 TLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAA 314



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 97/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY + ++ +CK+G+++ A  +L Q+   G  P  +TYNT+IDG    G 
Sbjct: 250 MTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGK 309

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    DEM  +G+ P   TY+ L+  L  E K+ EA     ++   G+ P++ITYN 
Sbjct: 310 TDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNA 369

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+     +A      M+ +G +PT  +YT LI  L+ +    EA +L      +G
Sbjct: 370 IMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRG 429

Query: 181 ML 182
           ++
Sbjct: 430 VV 431



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 68/115 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++PD  TY S V G+ +EG+++EA +    ++  G+ P A+TYN ++ G C    
Sbjct: 320 MRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARK 379

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            + A  F   MV++G  PT ++Y +LI  L  E    EA ++L E+  +G+V  S
Sbjct: 380 TDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKS 434


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 174/336 (51%), Gaps = 28/336 (8%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G QP   T GS ++G C+  R +EA  +++ M E GL P  V YNT+I+G C   +
Sbjct: 676  MMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRD 735

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A      M K+GI+  A TYN LI  L    +  +A  +L++M ++ I P+ I +  
Sbjct: 736  LNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTA 795

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+ + + GN  +A +L+ EMI + + P +LTY SLI     Q R+ +A  +F+  ++KG
Sbjct: 796  LIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKG 855

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              PD+V +N LI G C +  +E    L  EM    +  D  TYNTL+HG C+ GK+  A+
Sbjct: 856  CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQ 915

Query: 241  RLLDQMKRRGIKPDHISFNPTR----------------------------LTYNALIQGL 272
            ++ ++M   G+ PD +++N                               +TYN +IQG+
Sbjct: 916  KVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGM 975

Query: 273  CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            C+N +   A  L R +  KG+  D   Y ++I G+ 
Sbjct: 976  CRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLC 1011



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+ +G+  D+ TY + +SG+C  GR  +A+R+L  M +  + P  + +  LID +  +GN
Sbjct: 746  MEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 805

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A +   EM+++ + P   TYN LI+   ++ ++ +A  M   M  KG  PD +TYN 
Sbjct: 806  LLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNT 865

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI G+C+    +    L  EM H+G+     TY +LI    +  ++  A ++F   +  G
Sbjct: 866  LITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 925

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PDIV +N L+D  C NG IE+A  +++++ + ++  D +TYN ++ G CR  KV+EA 
Sbjct: 926  VPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAW 985

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L   + R+G+K D I+       Y  +I GLC+N     A++L   M   G  P +  Y
Sbjct: 986  CLFRSLTRKGVKLDAIA-------YITMISGLCRNGLRREADKLCTRMKEDGFMPSERIY 1038



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D Y++   +   C+  RL  A  +L +M + G  P+ VT+ +L+ G+C +  
Sbjct: 91  MELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNR 150

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYN 119
           +  AFS    MVK G  P    YN LI  L     +  A ++L EM +KG +  D +TYN
Sbjct: 151 IHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYN 210

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+ G C  G  ++A  +  +M  + I P + T+T+LI    KQ  + EA +L++  L  
Sbjct: 211 TLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQS 270

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + P+ V +N+LI+G C +G +  A      M      P+ VTYNTL++G C+  +VE+ 
Sbjct: 271 SIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDG 330

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L  +M R G+  D         TYN LI G C+  +  +A+++   MVS G+TPD  T
Sbjct: 331 MKLFQRMYREGLVGD-------TFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIIT 383

Query: 300 YFSLIEGIA 308
           +  L+ G+ 
Sbjct: 384 HCILLHGLC 392



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 146/294 (49%), Gaps = 8/294 (2%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M+ +G +  D  TY + ++G+C  G   +A+R+L  M +  + P   T+  LID +  +G
Sbjct: 196 MEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQG 255

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           NL+ A     +M++  I P   TYN LI+ L M  ++  A      M  KG  P+ +TYN
Sbjct: 256 NLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYN 315

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LING+C+    +    L   M  +G+     TY +LI    +  ++  A  +F   ++ 
Sbjct: 316 TLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSC 375

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PDI+    L+ G C NG I  A     +M   + +   V YN ++HG C+  KVEEA
Sbjct: 376 GVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEA 435

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             L  ++   G+KPD         TY  +I GLCKN     A+EL R M   GI
Sbjct: 436 WELFCRLPVEGVKPD-------ARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 153/309 (49%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           M   G +P+   Y + +  +CK G +  A  +L +M++ G L    VTYNTL+ G C  G
Sbjct: 161 MVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSG 220

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A     +M K+ I P   T+  LI   + +  + EA ++ K+M +  I P+++TYN
Sbjct: 221 EWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYN 280

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LING C  G    A    D M  KG  P ++TY +LI    K  R+ +  +LF+    +
Sbjct: 281 SLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYRE 340

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++ D   +N LI G+C  G +  A  +   M    V PD +T+  L+HG C  G++  A
Sbjct: 341 GLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSA 400

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
               + M R G K   I      + YN +I GLCK  + + A EL   +  +G+ PD  T
Sbjct: 401 MVKFNDM-RSGEKYLGI------VAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDART 453

Query: 300 YFSLIEGIA 308
           Y  +I G+ 
Sbjct: 454 YTIMILGLC 462



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 156/312 (50%), Gaps = 8/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++SR + P    +   ++ + K  + +    +  +M+  G+     ++  LI  +C    
Sbjct: 607 LQSRPI-PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSR 665

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A +   +M+K G  P+  T   L++      +  EA  ++  M E G+ P+ + YN 
Sbjct: 666 FSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNT 725

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+  +   A  +   M  KGI    +TY +LI  L    R  +A +L  + + + 
Sbjct: 726 VINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRK 785

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ F ALID     GN+  A +L KEM R  VHP+ +TYN+L++G C QG++ +A+
Sbjct: 786 IDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAK 845

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + D M  +G  PD +       TYN LI G CK++  +   +L  EM  +G+  D  TY
Sbjct: 846 HMFDLMVSKGCFPDVV-------TYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTY 898

Query: 301 FSLIEGIASVDK 312
            +LI G     K
Sbjct: 899 NTLIHGYCQAGK 910



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 151/306 (49%), Gaps = 8/306 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ +    R E      +QM+  G+     ++  LI  +C    L +A S 
Sbjct: 63  PSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSI 122

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P+  T+  L+H   +  ++ +A  ++  M + G  P+ + YN LI+  C+
Sbjct: 123 LGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCK 182

Query: 128 CGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
            G+   A  L +EM  KG +   ++TY +L+  L       +A ++  +   + + PD+ 
Sbjct: 183 NGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVF 242

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F ALID     GN++ A  L K+M +  + P+ VTYN+L++G C  G++  A++  D M
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM 302

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G  P+ +       TYN LI G CK++  +   +L + M  +G+  D  TY +LI G
Sbjct: 303 ASKGCFPNVV-------TYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHG 355

Query: 307 IASVDK 312
              V K
Sbjct: 356 YCQVGK 361



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 132/256 (51%), Gaps = 8/256 (3%)

Query: 54  GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           G+ +    E A     EMV+   +P+   +  L+  +   R+        ++M   GI  
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISH 98

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  ++ ILI+ +CRC     A S+  +M+  G  P+++T+ SL+     +NR+ +A  L 
Sbjct: 99  DLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLV 158

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCR 232
            + +  G  P++V++N LID  C NG++  A  LL EM++  ++  D VTYNTL+ G C 
Sbjct: 159 ASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCY 218

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            G+  +A R+L  M +R I PD         T+ ALI    K    D A+EL ++M+   
Sbjct: 219 SGEWRQAARILRDMTKRRINPD-------VFTFTALIDAFVKQGNLDEAQELYKQMLQSS 271

Query: 293 ITPDDNTYFSLIEGIA 308
           I P+  TY SLI G+ 
Sbjct: 272 IGPNTVTYNSLINGLC 287



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 133/274 (48%), Gaps = 30/274 (10%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF    EM++   +P+   +  ++  +    K      +  +M   GI  D  ++ ILI+
Sbjct: 599 AFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIH 658

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +CRC     A +L  +M+  G QP+++T  SL+    + NR  EA  L ++    G+ P
Sbjct: 659 CFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEP 718

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++V++N +I+G C N ++  A  +   M++  +  D VTYNTL+ G C  G+  +A RLL
Sbjct: 719 NVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLL 778

Query: 244 DQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLC-K 274
             M +R I P+ I F                            +P  LTYN+LI G C +
Sbjct: 779 RDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQ 838

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            + GD A+ +   MVSKG  PD  TY +LI G  
Sbjct: 839 GRLGD-AKHMFDLMVSKGCFPDVVTYNTLITGFC 871



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 12/188 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  P+  TY + ++G CK  R+E+  ++ ++M   GLV    TYNTLI GYC  G 
Sbjct: 302 MASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGK 361

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME----RKMVEADDMLKEMGEK--GIVPD 114
           L +A      MV  G+ P   T+ +L+H L +       MV+ +DM    GEK  GIV  
Sbjct: 362 LRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDM--RSGEKYLGIV-- 417

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
              YNI+I+G C+    ++A+ L   +  +G++P   TYT +I  L K     EAD+LF 
Sbjct: 418 --AYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFR 475

Query: 175 NFLAKGML 182
                G++
Sbjct: 476 RMKEDGII 483



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 156/377 (41%), Gaps = 74/377 (19%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA-------------VTYNTL 51
           GV+PD+ TY   + G+CK G   EA  +  +MKE+G++  A             V+  T+
Sbjct: 446 GVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGIICQAEDGHLGEHGTNNQVSLGTI 505

Query: 52  IDGYCNK--------GNLEMAFS---FRDEMVKQGIMPTASTYNL----LIHELLMER-- 94
           I   C K        G+L   +S       +V  G++P AS+ ++      H LL+ER  
Sbjct: 506 I--ICPKRRRSIMESGDLYYYYSDTTLWSSLV--GLIPIASSSSVKGFVRRHLLLLERGN 561

Query: 95  ---------------------------------KMVEADDMLKEMGEKGIVPDSITYNIL 121
                                            K  +A  +  EM +   +P  + +  +
Sbjct: 562 NPESRSFSGASHHHHHHHHHHYRERLRSELHCIKFDDAFGLFCEMLQSRPIPSIVDFTRV 621

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +    +         L  +M + GI   + ++T LI    + +R   A  L    +  G 
Sbjct: 622 LTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGF 681

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P IV   +L++G C     + A SL+  M  + + P+ V YNT+++G C+   +  A  
Sbjct: 682 QPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALE 741

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +   M+++GI  D +       TYN LI GLC +     A  LLR+MV + I P+   + 
Sbjct: 742 IFYGMEKKGIVADAV-------TYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFT 794

Query: 302 SLIEGIASVDKAAESSN 318
           +LI+         E+ N
Sbjct: 795 ALIDTFVKEGNLLEAKN 811



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 141/369 (38%), Gaps = 74/369 (20%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y   + G+CK  ++EEA  +  ++   G+ P A TY  +I G C  G    A      M
Sbjct: 418 AYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRM 477

Query: 72  VKQGIMPTASTYNLLIH---------ELLM----ERKMVEADDMLKEMGEK-------GI 111
            + GI+  A   +L  H          +++     R ++E+ D+     +        G+
Sbjct: 478 KEDGIICQAEDGHLGEHGTNNQVSLGTIIICPKRRRSIMESGDLYYYYSDTTLWSSLVGL 537

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV------------ 159
           +P  I  +  + G+ R          H  ++ +G  P   +++                 
Sbjct: 538 IP--IASSSSVKGFVR---------RHLLLLERGNNPESRSFSGASHHHHHHHHHHYRER 586

Query: 160 LSKQNRMIEADQ---LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           L  +   I+ D    LF   L    +P IV F  ++         +    L  +M+ + +
Sbjct: 587 LRSELHCIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGI 646

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------- 259
             D  ++  L+H  CR  +   A  LL +M + G +P  ++                   
Sbjct: 647 SHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVS 706

Query: 260 -----------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                      P  + YN +I GLCKN++ + A E+   M  KGI  D  TY +LI G+ 
Sbjct: 707 LVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLC 766

Query: 309 SVDKAAESS 317
           +  +  +++
Sbjct: 767 NSGRWTDAA 775



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            GV PD  TY   +  +C  G++E+A  M+E +++N +    +TYN +I G C    ++ A
Sbjct: 925  GVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEA 984

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +     + ++G+   A  Y  +I  L       EAD +   M E G +P    Y+
Sbjct: 985  WCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYD 1039


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 166/308 (53%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ PD YTY + + GMCKEG +E A+ ++  +   G  P  ++YN L+  + N+G 
Sbjct: 243 MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGK 302

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       EM  +G  P   TY++LI  L    ++ EA  +LK M EK + PD+ +Y+ 
Sbjct: 303 WDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDP 362

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A  + D MI  G  P ++ Y +++  L K     +A ++F      G
Sbjct: 363 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 422

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  +N +I    + G+  RA  ++  M    + PDE+TYN+L+   CR G VEEA 
Sbjct: 423 CPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAI 482

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD M++ G       F PT ++YN ++ GLCK +  D A  +  EM+ KG  P++ TY
Sbjct: 483 GLLDDMEQSG-------FRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTY 535

Query: 301 FSLIEGIA 308
             LIEGI 
Sbjct: 536 ILLIEGIG 543



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 168/303 (55%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD + Y + +SG CK  ++E A+++L +MK  G +P  VTYN +I   CN+  L +A +
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALT 203

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D+++    MPT  TY +LI   ++E  + EA  +L+EM  +G++PD  TYN +I G C
Sbjct: 204 VLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 263

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G  ++A  L   +  KG +P +++Y  L+     Q +  E ++L     ++G  P+ V
Sbjct: 264 KEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKV 323

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LI   C  G I+ A S+LK M   ++ PD  +Y+ L+   C++G+++ A  ++D M
Sbjct: 324 TYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYM 383

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD ++       YN ++  LCKN   + A E+  ++   G  P+ ++Y ++I  
Sbjct: 384 ISNGCLPDIVN-------YNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISA 436

Query: 307 IAS 309
           + S
Sbjct: 437 LWS 439



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 155/316 (49%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + ++G  PD       + G      +E+ASR++E + E+   P    YN +I G+C    
Sbjct: 104 LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL-ESHTEPDVFAYNAVISGFCKVNQ 162

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + M  +G +P   TYN++I  L   RK+  A  +L ++     +P  ITY I
Sbjct: 163 IEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTI 222

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI      G   +A  L +EM+ +G+ P M TY ++I  + K+  +  A +L  +  +KG
Sbjct: 223 LIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG 282

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N L+      G  +    L+ EM      P++VTY+ L+   CR G+++EA 
Sbjct: 283 CEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAI 342

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  M  + + PD  S++P       LI  LCK    DLA  ++  M+S G  PD   Y
Sbjct: 343 SVLKVMIEKELTPDTYSYDP-------LISALCKEGRLDLAIGIMDYMISNGCLPDIVNY 395

Query: 301 FSLIEGIASVDKAAES 316
            +++  +     A ++
Sbjct: 396 NTILAALCKNGNANQA 411



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 123/251 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG +P+  TY   +S +C+ GR++EA  +L+ M E  L P   +Y+ LI   C +G 
Sbjct: 313 MFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGR 372

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A    D M+  G +P    YN ++  L       +A ++  ++   G  P+  +YN 
Sbjct: 373 LDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNT 432

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+    CG+  +A  +   MI KGI P  +TY SLI  L +   + EA  L ++    G
Sbjct: 433 MISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSG 492

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N ++ G C    I+ A  +  EM      P+E TY  L+ G    G   EA 
Sbjct: 493 FRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAM 552

Query: 241 RLLDQMKRRGI 251
            L + +  R +
Sbjct: 553 ELANSLFSRDV 563



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 8/221 (3%)

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           K  E+   L+ +  KG  PD I    LI G+    N +KA  +  E++    +P +  Y 
Sbjct: 93  KFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYN 151

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           ++I    K N++  A Q+     A+G LPDIV +N +I   C    +  A ++L ++   
Sbjct: 152 AVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLD 211

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
              P  +TY  L+     +G + EA +LL++M  RG+ PD         TYNA+I+G+CK
Sbjct: 212 NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDM-------YTYNAIIRGMCK 264

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
               + A EL+  + SKG  PD  +Y  L+    +  K  E
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDE 305



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 35/217 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+Y+Y   +S +CKEGRL+ A  +++ M  NG +P  V YNT++   C  GN
Sbjct: 348 MIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 407

Query: 61  LEMAFSFRDE-----------------------------------MVKQGIMPTASTYNL 85
              A    ++                                   M+ +GI P   TYN 
Sbjct: 408 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNS 467

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L  +  + EA  +L +M + G  P  I+YNI++ G C+      A  +  EMI KG
Sbjct: 468 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG 527

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            +P   TY  LI  +       EA +L  +  ++ ++
Sbjct: 528 CRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 564



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 32/185 (17%)

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  +  E+    E  + KG  PD+++   LI G     NIE+A S + E+      PD  
Sbjct: 90  KAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKA-SRVMEILESHTEPDVF 148

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------------------- 259
            YN ++ G C+  ++E A ++L++MK RG  PD +++N                      
Sbjct: 149 AYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQL 208

Query: 260 ------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---V 310
                 PT +TY  LI+        + A +LL EM+++G+ PD  TY ++I G+     V
Sbjct: 209 LLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMV 268

Query: 311 DKAAE 315
           ++AAE
Sbjct: 269 ERAAE 273


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 170/311 (54%), Gaps = 9/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD+ T+ + + G+CK G+ +EA    + M   G VP  VTYN L++G C    +E A 
Sbjct: 221 VSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAH 278

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +  + MV +G+ P   TY++L+       ++ EA ++L  M  +G  P+ +T+N +I+G 
Sbjct: 279 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 338

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+   + +AF +  ++ ++ + P  +T+  LI    K     +A  LFE  +AK M PD+
Sbjct: 339 CKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDV 398

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + F ALIDG C  G +E A  +L  M  + V P+ VTYN L+HG C+ G++EE    L++
Sbjct: 399 MTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEE 458

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M   G  P+        +TY +L+  LC+    D A +L+ ++ S G  PD  TY  L++
Sbjct: 459 MVSSGCVPES-------MTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVD 511

Query: 306 GIASVDKAAES 316
           G+    K  ++
Sbjct: 512 GLWKSGKTEQA 522



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 169/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  P+  TY + V+G+CK  ++E A  M+E M + G+ P  +TY+ L+D +C    
Sbjct: 249 MIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M  +G  P   T+N +I  L    +  EA  +  ++  + +VPD +T+NI
Sbjct: 309 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+ GN ++A +L +EM+ K +QP ++T+ +LI  L K  ++  A  + +     G
Sbjct: 369 LIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 428

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N L+ G C +G IE     L+EM      P+ +TY +L++  CR  + ++A 
Sbjct: 429 VPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDAL 488

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L+ ++K  G  PD +       TYN L+ GL K+ + + A  +L EMV KG  PD  T+
Sbjct: 489 QLVSKLKSFGWDPDTV-------TYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTF 541

Query: 301 FSLIEGI 307
            +   G+
Sbjct: 542 AACFGGL 548



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 172/347 (49%), Gaps = 48/347 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P   TY + ++G+CK   L     + E++ + G  P  VTYNTLID  C  G+
Sbjct: 72  MARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGD 131

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---------- 110
           LE A      M  +G +P   TY++LI+ L    ++ EA ++++EM  K           
Sbjct: 132 LEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 191

Query: 111 -----------------------------IVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
                                        + PD++T++ LI+G C+CG   +A   +D+M
Sbjct: 192 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA--CNDDM 249

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           I  G  P ++TY +L+  L K ++M  A  + E+ + KG+ PD++ ++ L+D  C    +
Sbjct: 250 IAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRV 309

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  LL  M      P+ VT+N+++ G C+  +  EA ++  Q+  R + PD       
Sbjct: 310 DEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPD------- 362

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           ++T+N LI G CK    + A  L  EMV+K + PD  T+ +LI+G+ 
Sbjct: 363 KVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLC 409



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 165/313 (52%), Gaps = 22/313 (7%)

Query: 13  YGSFVSGMCKEGRLEEASRMLE----QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           Y   +  +C+ G   E +R LE    +M  +G+ PT VTYNT+I+G C    L       
Sbjct: 48  YNIVLQSLCRAG---ETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 104

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           +E+VK+G  P   TYN LI  L     + EA  +   M  +G VP+ +TY++LING C+ 
Sbjct: 105 EELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKV 164

Query: 129 GNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML---P 183
           G   +A  L  EM  K   + P ++TY S +  L KQ+   EA +L  + L  G L   P
Sbjct: 165 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS-LRDGSLRVSP 223

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V F+ LIDG C  G  + A +   +M      P+ VTYN L++G C+  K+E A  ++
Sbjct: 224 DTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMI 281

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + M  +G+ PD I       TY+ L+   CK    D A ELL  M S+G TP+  T+ S+
Sbjct: 282 ESMVDKGVTPDVI-------TYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 334

Query: 304 IEGIASVDKAAES 316
           I+G+   D++ E+
Sbjct: 335 IDGLCKSDRSGEA 347



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 134/254 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  P+  T+ S + G+CK  R  EA ++  Q+    LVP  VT+N LI G C  GN
Sbjct: 319 MASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGN 378

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A +  +EMV + + P   T+  LI  L    ++  A D+L  MG  G+ P+ +TYN+
Sbjct: 379 FEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNV 438

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  ++     +EM+  G  P  +TY SL++ L + +R  +A QL     + G
Sbjct: 439 LVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFG 498

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V +N L+DG   +G  E+A ++L+EM      PD  T+     G  R G +    
Sbjct: 499 WDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTM 558

Query: 241 RLLDQMKRRGIKPD 254
            LL  +  +G+ PD
Sbjct: 559 ELLRVVLAKGMLPD 572



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 110/193 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ +QPD  T+G+ + G+CK G++E A  +L+ M   G+ P  VTYN L+ G C  G 
Sbjct: 389 MVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGR 448

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E    F +EMV  G +P + TY  L++ L    +  +A  ++ ++   G  PD++TYNI
Sbjct: 449 IEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNI 508

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G  + G  ++A ++ +EM+ KG QP   T+ +    L +   +    +L    LAKG
Sbjct: 509 LVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKG 568

Query: 181 MLPDIVMFNALID 193
           MLPD    ++++D
Sbjct: 569 MLPDATTCSSILD 581



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 8/204 (3%)

Query: 118 YNILINGYCRCGNAKKAFSL-HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           YNI++   CR G   +A  +   EM   G+ PT++TY ++I  L K N +    +LFE  
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           + +G  PD+V +N LID  C  G++E A  L   M      P+ VTY+ L++G C+ G++
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV--SKGIT 294
           +EAR L+ +M R+          P  +TYN+ + GLCK      A EL+R +   S  ++
Sbjct: 168 DEARELIQEMTRK-----SCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVS 222

Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
           PD  T+ +LI+G+    +  E+ N
Sbjct: 223 PDTVTFSTLIDGLCKCGQTDEACN 246



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 110/225 (48%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +R + PD  T+   ++G CK G  E+AS + E+M    + P  +T+  LIDG C  G +E
Sbjct: 356 NRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVE 415

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    D M   G+ P   TYN+L+H L    ++ E  + L+EM   G VP+S+TY  L+
Sbjct: 416 AARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLV 475

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
              CR      A  L  ++   G  P  +TY  L+  L K  +  +A  + E  + KG  
Sbjct: 476 YALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQ 535

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           PD   F A   G   +GN+     LL+ +    + PD  T ++++
Sbjct: 536 PDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 181/379 (47%), Gaps = 63/379 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P   T+   ++G+ K+G L++A  ++++M + GL  +  TYN LI GYC KG 
Sbjct: 263 MQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGL 322

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +  +EMV +G+ PT +++N +++    E KM +A   L +M +K ++PD I+YN 
Sbjct: 323 LVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNT 382

Query: 121 LINGYCRCGNAKKAFSLHDE-----------------------------------MIHKG 145
           LI G+CR GN  +AF L DE                                   MI++G
Sbjct: 383 LIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRG 442

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P ++TYT L+    K   M+ A + F+  L  G+ PD   + A I G    G+  +AF
Sbjct: 443 IHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAF 502

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
            L +EM      PD +TYN  ++G C+ G +EEA  LL +M R G  PDH+++       
Sbjct: 503 KLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAH 562

Query: 259 ---------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 PT +TY  LI     N   D A     EM  KG+ P+ 
Sbjct: 563 MENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNV 622

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY  LI G   V K  ++
Sbjct: 623 ITYNVLINGFCKVRKMDQA 641



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 159/281 (56%), Gaps = 7/281 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           L +A  +   M E G+ PT  TYNT++  +C  G ++ A     +M ++G  P+  T+N+
Sbjct: 218 LVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNV 277

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+ L  + ++ +A  +++EM + G+     TYN LI GYC+ G   +A +L +EM+ +G
Sbjct: 278 LINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRG 337

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + PT+ ++ ++++   K+ +M +A Q   + L K ++PDI+ +N LI G C  GNI  AF
Sbjct: 338 VSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAF 397

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            LL E+    +  + VTYNTL+ G CR G +E A +L + M  RGI PD +       TY
Sbjct: 398 ILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVV-------TY 450

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             L+ G CK     +A+E   EM+  G+ PD   Y + I G
Sbjct: 451 TVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVG 491



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD  +Y + + G C+ G + EA  +L++++   L    VTYNTLIDG C  G+
Sbjct: 368 MLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGD 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A   +++M+ +GI P   TY +L++       M+ A +   EM   G+ PD   Y  
Sbjct: 428 LETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTA 487

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G  + G+  KAF L +EM+ KG  P ++TY   +  L K   + EA +L +  +  G
Sbjct: 488 RIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDG 547

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD V + + +  H  NG++     +  +M      P  VTY  L+H     G+++ A 
Sbjct: 548 HVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAM 607

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M+ +G+ P+ I       TYN LI G CK ++ D A +   EM  KGI P+  TY
Sbjct: 608 AYFLEMQEKGVVPNVI-------TYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTY 660

Query: 301 FSLIEGIASVDKAAES 316
             LI    ++ K  E+
Sbjct: 661 TILINENCNMGKWQEA 676



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 161/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ R +  +  TY + + G+C+ G LE A ++ E M   G+ P  VTY  L++G C  GN
Sbjct: 403 LRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGN 462

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + MA  F DEM+  G+ P    Y   I   L      +A  + +EM  KG  PD ITYN+
Sbjct: 463 MLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNV 522

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +NG C+ GN ++A  L  +MI  G  P  +TYTS +    +   + E  ++F + L++G
Sbjct: 523 FVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRG 582

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +  LI  H  NG ++ A +   EM    V P+ +TYN L++G C+  K+++A 
Sbjct: 583 QTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQAC 642

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +   +M+ +GI P+       + TY  LI   C   +   A  L  +M+ K I PD  T+
Sbjct: 643 KFFIEMQEKGIFPN-------KYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTH 695

Query: 301 FSLIEGI 307
            +L++ +
Sbjct: 696 GALLKKL 702



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 165/334 (49%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P   TY + +   CK G ++ A  ++ +M+E G  P+ VT+N LI+G   KG 
Sbjct: 228 MGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGE 287

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM K G+  +  TYN LI     +  +VEA  + +EM  +G+ P   ++N 
Sbjct: 288 LQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNT 347

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G+C+ G    A     +M+ K + P +++Y +LI+   +   + EA  L +    + 
Sbjct: 348 IMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRN 407

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +IV +N LIDG C  G++E A  L ++M    +HPD VTY  L++G C+ G +  A+
Sbjct: 408 LSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAK 467

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
              D+M   G+ PD  +                            F P  +TYN  + GL
Sbjct: 468 EFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGL 527

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           CK    + A ELL++M+  G  PD  TY S +  
Sbjct: 528 CKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHA 561



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 7/275 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           + E+M  N  +P     N ++    +K  L  A      M + GI PT +TYN ++H   
Sbjct: 189 VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFC 248

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
              ++  A D++ +M E+G  P  +T+N+LING  + G  ++A  L  EM   G++ +  
Sbjct: 249 KGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPY 308

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY  LI    K+  ++EA  L+E  + +G+ P +   N ++ G C  G +  A   L +M
Sbjct: 309 TYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDM 368

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            +  + PD ++YNTL++G CR G + EA  LLD+++ R     ++SFN   +TYN LI G
Sbjct: 369 LKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFR-----NLSFNI--VTYNTLIDG 421

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LC+  + + A +L  +M+++GI PD  TY  L+ G
Sbjct: 422 LCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNG 456



 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 114/236 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD + Y + + G  K G   +A ++ E+M   G  P  +TYN  ++G C  GNLE A
Sbjct: 477 GLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEA 536

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M++ G +P   TY   +H  +    + E  ++  +M  +G  P  +TY +LI+ 
Sbjct: 537 GELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHA 596

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +   G    A +   EM  KG+ P ++TY  LI    K  +M +A + F     KG+ P+
Sbjct: 597 HALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPN 656

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +  LI+ +C  G  + A  L  +M   ++ PD  T+  L+    +  KV+  +
Sbjct: 657 KYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKVQAVQ 712


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 176/351 (50%), Gaps = 44/351 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK----------------EGRLEEASRMLEQMKENGLVPT 44
           M  +G  P+  TY S + G+CK                +G+LEEA R+L++M   GL P 
Sbjct: 165 MLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPD 224

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
            VTY+ LID YC  G    A +  D MV++G  P A TY  L+H    +  +V+  D+L 
Sbjct: 225 VVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLA 284

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
            M + GI  +   +NILI  Y +     KA +   EM  KG  P ++TYT++I +L K  
Sbjct: 285 LMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAG 344

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           R+ +A   F   +++G+ PDI+ F +LI G CT G  ++   L  EM    +HP+ +  N
Sbjct: 345 RVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLN 404

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------------------- 259
           T+M   C++G+V EA    DQ+   G+KPD +S+                          
Sbjct: 405 TIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSI 464

Query: 260 ---PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              P  +TY+AL+ G CKN   D A  L REM SK + P+  TY  ++ G+
Sbjct: 465 GLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGL 515



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 164/316 (51%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD+YTY + + G   +G L +   +L  M ++G+      +N LI  Y     
Sbjct: 251 MVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNET 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   EM ++G  P   TY  +I  L    ++ +A     +M  +G+ PD IT+  
Sbjct: 311 LDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTS 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  KK   L  EMI++GI P  +   +++  L K+ R++EA   F+  +  G
Sbjct: 371 LIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVG 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +  LIDG+C +G ++ +  LL  M  + + PD VTY+ L++G C+ G+V++A 
Sbjct: 431 VKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDAL 490

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  + +KP+ I       TYN ++ GL        A E   ++V  GI    NTY
Sbjct: 491 ALYREMFSKDVKPNAI-------TYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTY 543

Query: 301 FSLIEGIAS---VDKA 313
             ++ G+     VD+A
Sbjct: 544 NIVLGGLCENSFVDEA 559



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 163/333 (48%), Gaps = 28/333 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  + + +   +    K   L++A     +M++ G  P  VTY T+ID  C  G 
Sbjct: 286 MIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGR 345

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A S   +MV +G+ P   T+  LIH L    +  + + +  EM  +GI P++I  N 
Sbjct: 346 VEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNT 405

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C+ G   +A    D++IH G++P +++YT LI       +M E+ +L    ++ G
Sbjct: 406 IMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIG 465

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V ++AL++G+C NG ++ A +L +EM    V P+ +TYN ++HG    G+V  AR
Sbjct: 466 LRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAR 525

Query: 241 ----RLLDQMKRRGIKPDHI--------SFNPTRL----------------TYNALIQGL 272
               +++D   + GI   +I        SF    L                T+N +I GL
Sbjct: 526 EFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGL 585

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
            K      A+ L   ++  G+ PD   Y  +I+
Sbjct: 586 LKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQ 618



 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 153/304 (50%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD  T+ S + G+C  G  ++  ++  +M   G+ P A+  NT++D  C +G 
Sbjct: 356 MVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGR 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D+++  G+ P   +Y +LI    ++ KM E+  +L  M   G+ PD++TY+ 
Sbjct: 416 VLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSA 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ G    A +L+ EM  K ++P  +TY  ++  L    R++ A + +   +  G
Sbjct: 476 LLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSG 535

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   I  +N ++ G C N  ++ A  + + +   +   +  T+N ++ G  + G++ +A+
Sbjct: 536 IQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAK 595

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +   G+ PD I        Y  +IQ   +    + ++EL   M   G T +  T 
Sbjct: 596 SLFSAILPSGLVPDAI-------IYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTL 648

Query: 301 FSLI 304
            +++
Sbjct: 649 NAIV 652



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 158/314 (50%), Gaps = 33/314 (10%)

Query: 9   DSYTYGSFVSGMCKEG----RLEEASR----MLEQMKENGL--VPTAVTYNTLIDGYCNK 58
           D+ T+G  +   C  G     LEE SR     +  M ++G    P  ++YN +I+G   +
Sbjct: 93  DACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKE 152

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK--------- 109
           G ++ A++   EM+ QG  P   TYN +I  L   + M +A+ +L++M +K         
Sbjct: 153 GEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRL 212

Query: 110 -------GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
                  G+ PD +TY++LI+ YC+ G   +A ++ D M+ +G  P   TY +L+   + 
Sbjct: 213 LKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYAT 272

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           +  +++   L    +  G+  +  +FN LI  +  N  +++A +   EM +    P+ VT
Sbjct: 273 KGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVT 332

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y T++   C+ G+VE+A     QM   G+ PD I       T+ +LI GLC   E    E
Sbjct: 333 YTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDII-------TFTSLIHGLCTIGEWKKVE 385

Query: 283 ELLREMVSKGITPD 296
           +L  EM+++GI P+
Sbjct: 386 KLSFEMINRGIHPN 399



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 124/245 (50%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  +Y   + G C +G+++E+ ++L +M   GL P  VTY+ L++GYC  G ++ A
Sbjct: 430 GVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDA 489

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EM  + + P A TYN+++H L    ++V A +   ++ + GI     TYNI++ G
Sbjct: 490 LALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGG 549

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C      +A  +   +  K  Q  + T+  +I  L K  R+ +A  LF   L  G++PD
Sbjct: 550 LCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPD 609

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +++  +I  H   G +E +  L   M++     +  T N ++     +G V  A   L 
Sbjct: 610 AIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLT 669

Query: 245 QMKRR 249
           ++  +
Sbjct: 670 KIDEK 674



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 140/322 (43%), Gaps = 69/322 (21%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           + Q+  N L   A T+  LI  +CN G L+  F+  +E                      
Sbjct: 82  MAQVGVNKLATDACTFGILIRCFCNVGLLD--FALEEE---------------------- 117

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
            R    A  M+ + G     P+ ++YN++ING  + G   KA++L  EM+ +G  P ++T
Sbjct: 118 SRGSRAAVHMMADDGYN-CPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVT 176

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGML----------------PDIVMFNALIDGHC 196
           Y S+I  L K   M +A+ + +    KG L                PD+V ++ LID +C
Sbjct: 177 YNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYC 236

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK-PDH 255
             G    A ++   M R   +PD  TY TL+HG   +G + +   LL  M + GI   DH
Sbjct: 237 KIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDH 296

Query: 256 I---------------------------SFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           +                            F+P  +TY  +I  LCK    + A     +M
Sbjct: 297 VFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQM 356

Query: 289 VSKGITPDDNTYFSLIEGIASV 310
           VS+G++PD  T+ SLI G+ ++
Sbjct: 357 VSEGLSPDIITFTSLIHGLCTI 378



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 125/253 (49%), Gaps = 1/253 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PD+ TY + ++G CK GR+++A  +  +M    + P A+TYN ++ G  + G 
Sbjct: 461 MVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGR 520

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  ++V  GI    +TYN+++  L     + EA  M + +  K    +  T+NI
Sbjct: 521 VVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNI 580

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  + G    A SL   ++  G+ P  + Y  +I    ++  + E+D+LF +    G
Sbjct: 581 MIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNG 640

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +    NA++      G++ RA + L ++D  K +  E +   L+     + K ++  
Sbjct: 641 CTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDE-KEYSVEASTAVLLISIVSERKYQKEV 699

Query: 241 RLLDQMKRRGIKP 253
           + L +  +  ++P
Sbjct: 700 KFLPEKYQSFMEP 712



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 109/242 (45%), Gaps = 40/242 (16%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE----------MIHKGIQ--PTM 150
           + ++G   +  D+ T+ ILI  +C  G     F+L +E          M   G    P +
Sbjct: 82  MAQVGVNKLATDACTFGILIRCFCNVGLLD--FALEEESRGSRAAVHMMADDGYNCPPNV 139

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT------------- 197
           L+Y  +I  L K+  + +A  LF   L +G  P+IV +N++IDG C              
Sbjct: 140 LSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQ 199

Query: 198 ---NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
               G +E A  LLK+M    + PD VTY+ L+   C+ G+  EAR + D M RRG  PD
Sbjct: 200 MFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPD 259

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVD 311
                    TY  L+ G           +LL  M+  GI  +D+ +  LI   A   ++D
Sbjct: 260 -------AYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLD 312

Query: 312 KA 313
           KA
Sbjct: 313 KA 314


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 170/304 (55%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+ T+ + ++G+C EG+++EA  +  +M + G  P  ++Y T+I+G C  GN  MA
Sbjct: 158 GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMA 217

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M + G  P   TY+ +I  L  +R + +A + L EM E+GI P+  TYN +++G
Sbjct: 218 VDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHG 277

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G   +A  L  EM+ + + P  +T+T L+  L K+  + EA  +FE    KG+ PD
Sbjct: 278 FCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPD 337

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I  +NAL+DG+C    +  A  + + M R    P   +YN L++G C+  +++EA+ LL 
Sbjct: 338 ISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLA 397

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  + + PD +       TY+ L+QGLC+      A  L +EM S G  P+  TY  L+
Sbjct: 398 EMYHKALNPDTV-------TYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILL 450

Query: 305 EGIA 308
           +G  
Sbjct: 451 DGFC 454



 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 169/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+ +TY S V G C  G+L EA+R+ ++M    ++P  VT+  L+DG C +G 
Sbjct: 259 MVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGM 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M ++G+ P  STYN L+    ++R M EA  + + M  KG  P + +YNI
Sbjct: 319 VSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A SL  EM HK + P  +TY++L+  L +  R  EA  LF+   + G
Sbjct: 379 LINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +  L+DG C +G+++ A  LLK M   K+ P+ V Y  L+ G    GK+E A+
Sbjct: 439 PHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAK 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++   G +PD         TY  +I+GL K    D A +L R+M   G  P+  +Y
Sbjct: 499 ELFSKLFGDGTRPD-------IRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 551

Query: 301 FSLIEGI 307
             +I+G 
Sbjct: 552 NVMIQGF 558



 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 173/307 (56%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +P+  +Y + ++G+CK G    A  + ++M++NG  P  VTY+T+ID  C    
Sbjct: 189 MVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRL 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  EMV++GI P   TYN ++H      ++ EA  + KEM  + ++P+++T+ I
Sbjct: 249 VNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTI 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G   +A  + + M  KG++P + TY +L+     Q  M EA ++FE  + KG
Sbjct: 309 LVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P    +N LI+G+C +  ++ A SLL EM    ++PD VTY+TLM G C+ G+ +EA 
Sbjct: 369 CAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEAL 428

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G  P+ +       TY  L+ G CK+   D A +LL+ M  K + P+   Y
Sbjct: 429 NLFKEMCSYGPHPNLV-------TYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHY 481

Query: 301 FSLIEGI 307
             LIEG+
Sbjct: 482 TILIEGM 488



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 13/310 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +P+  TY + +  +CK+  + +A   L +M E G+ P   TYN+++ G+CN G 
Sbjct: 224 MEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQ 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EMV + +MP   T+ +L+  L  E  + EA  + + M EKG+ PD  TYN 
Sbjct: 284 LNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNA 343

Query: 121 LINGYC--RCGN-AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           L++GYC  R  N AKK F +   MI KG  P   +Y  LI    K  RM EA  L     
Sbjct: 344 LMDGYCLQRLMNEAKKVFEI---MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMY 400

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            K + PD V ++ L+ G C  G  + A +L KEM     HP+ VTY  L+ G C+ G ++
Sbjct: 401 HKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLD 460

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA +LL  MK + ++P+ +        Y  LI+G+    + ++A+EL  ++   G  PD 
Sbjct: 461 EALKLLKSMKEKKLEPNIVH-------YTILIEGMFIAGKLEVAKELFSKLFGDGTRPDI 513

Query: 298 NTYFSLIEGI 307
            TY  +I+G+
Sbjct: 514 RTYTVMIKGL 523



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V  + Y+    ++ +C+   ++ +  +L +M + G+ P A+T+N LI+G CN+G ++ A 
Sbjct: 124 VTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAV 183

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +EMVK+G  P   +Y  +I+ L        A D+ K+M + G  P+ +TY+ +I+  
Sbjct: 184 ELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSL 243

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+      A     EM+ +GI P + TY S++       ++ EA +LF+  + + ++P+ 
Sbjct: 244 CKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNT 303

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V F  L+DG C  G +  A  + + M    V PD  TYN LM G C Q  + EA+++ + 
Sbjct: 304 VTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEI 363

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M R+G  P   S       YN LI G CK++  D A+ LL EM  K + PD  TY +L++
Sbjct: 364 MIRKGCAPGAHS-------YNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQ 416

Query: 306 GIASVDKAAESSN 318
           G+  + +  E+ N
Sbjct: 417 GLCQLGRPKEALN 429



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 126/246 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+PD  TY + + G C +  + EA ++ E M   G  P A +YN LI+GYC    
Sbjct: 329 MTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRR 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S   EM  + + P   TY+ L+  L    +  EA ++ KEM   G  P+ +TY I
Sbjct: 389 MDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVI 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G+  +A  L   M  K ++P ++ YT LI  +    ++  A +LF      G
Sbjct: 449 LLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDG 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI  +  +I G    G  + A+ L ++M+     P+  +YN ++ G  +      A 
Sbjct: 509 TRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAI 568

Query: 241 RLLDQM 246
           RL+D+M
Sbjct: 569 RLIDEM 574



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 108/227 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P +++Y   ++G CK  R++EA  +L +M    L P  VTY+TL+ G C  G 
Sbjct: 364 MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGR 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   EM   G  P   TY +L+        + EA  +LK M EK + P+ + Y I
Sbjct: 424 PKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTI 483

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G    G  + A  L  ++   G +P + TYT +I  L K+    EA  LF      G
Sbjct: 484 LIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDG 543

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            LP+   +N +I G   N +   A  L+ EM   +   +  T+  L+
Sbjct: 544 FLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLL 590



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 94/193 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+ TY + + G+C+ GR +EA  + ++M   G  P  VTY  L+DG+C  G+
Sbjct: 399 MYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGH 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M ++ + P    Y +LI  + +  K+  A ++  ++   G  PD  TY +
Sbjct: 459 LDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTV 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  + G + +A+ L  +M   G  P   +Y  +I    +      A +L +  + K 
Sbjct: 519 MIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKR 578

Query: 181 MLPDIVMFNALID 193
              ++  F  L+D
Sbjct: 579 FSVNLSTFQMLLD 591


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 163/307 (53%), Gaps = 9/307 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D  +Y   ++G+CK+G++ EA  +  +M+E G  P + TYN LI+G C    LEM  S  
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           DEM  +G  PT  TY  LIH      ++  A D+L EM  +GI P+++TY  LI G C C
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDC 209

Query: 129 GNAKKAFSLHDEMIHKGIQ--PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           G  ++A  +  EM  +G +  P ++TYT LI  L ++       +  +  +  G  P+  
Sbjct: 210 GEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNA 269

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            + ALI G C  G+   A  LL EM  +    D V YN+L+ G C+ G+++ AR +   M
Sbjct: 270 TYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILM 329

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G+ PD         TY +LIQGLC     D A  L++EM +KGI P+  TY +LI G
Sbjct: 330 VEKGVAPD-------VFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLING 382

Query: 307 IASVDKA 313
               D+ 
Sbjct: 383 FTQADRT 389



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 166/311 (53%), Gaps = 9/311 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  PDS+TY   ++G+CK+ +LE    ++++M+  G  PT VTY TLI G+C  G 
Sbjct: 117 MEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGR 176

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITY 118
           ++ A    DEM  +GI P   TY  LI  L    ++  A  +LKEM  +G    P+ +TY
Sbjct: 177 VDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTY 236

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             LI+G C+ G  +      DEMI  G  P   TYT+LI  L ++   +EA  L    +A
Sbjct: 237 TQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVA 296

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G   D+V++N+LIDG C  G ++ A  +   M    V PD  TY +L+ G C  G ++E
Sbjct: 297 IGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDE 356

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L+ +M+ +GI P+ +       TY  LI G  +    D A +L+ EM S G+ P  +
Sbjct: 357 ALGLMQEMRAKGIVPNSV-------TYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGD 409

Query: 299 TYFSLIEGIAS 309
            Y  L + + S
Sbjct: 410 IYKILFKSLYS 420


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 176/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD  TY S + G  K G LEE + +  +MK+ G VP  +TYN LI+ YC    
Sbjct: 315 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 374

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF +  EM   G+ P   TY+ LI     E  M  A  +  +M   G++P+  TY  
Sbjct: 375 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTS 434

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ GN  +A+ L ++M+  G++  ++TYT+L+  L K  RMIEA+++F + L  G
Sbjct: 435 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 494

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++ AL+ G+     +E A  +LK+M    + PD + Y +++ G C Q K+EE +
Sbjct: 495 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 554

Query: 241 RLLDQMKRRGIKP-------------------DHISF---------NPTRLTYNALIQGL 272
            +L++MK RGI                     D ++F           T +TY  LI GL
Sbjct: 555 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 614

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK    +LA +    M+S G+ P+   Y SLI+G+ 
Sbjct: 615 CKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLC 650



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 160/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G++P+  TY + +   CKEG ++ A ++   M+  GL+P   TY +LID  C  GN
Sbjct: 385 MKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGN 444

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+   ++M++ G+     TY  L+  L    +M+EA+++ + M + GI P+   Y  
Sbjct: 445 LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTA 504

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY +    + A  +  +M    I+P ++ Y S+I+    Q ++ E   + E   ++G
Sbjct: 505 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 564

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V+   +ID +   G    A +  +EM  + V    VTY  L+ G C+ G VE A 
Sbjct: 565 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAV 624

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M   G++P+          Y +LI GLCKN   + A++L  EM  +G+TPD   +
Sbjct: 625 DYFCRMLSLGLQPN-------VAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAF 677

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 678 TALIDG 683



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 156/293 (53%), Gaps = 7/293 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G LEEA+    +M+    +P A + N L+      GN ++   F ++M+  GI P+  TY
Sbjct: 233 GLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTY 292

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N++I  L  E  +  +  +  +M E G+ PD +TYN LI+GY + G+ ++  SL +EM  
Sbjct: 293 NVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD 352

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P ++TY  LI    K  +M  A + F      G+ P++V ++ LID  C  G ++ 
Sbjct: 353 VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQG 412

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  L  +M R  + P+E TY +L+   C+ G + EA +LL+ M + G+K + +       
Sbjct: 413 AIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIV------- 465

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           TY AL+ GLCK      AEE+ R M+  GI+P+   Y +L+ G    ++  ++
Sbjct: 466 TYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA 518



 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 159/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++    P + +    +  + K G  +   +    M   G+ P+  TYN +ID  C +G+
Sbjct: 245 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 304

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE +     +M + G+ P   TYN LI        + E   +  EM + G VPD ITYN 
Sbjct: 305 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 364

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+     +AF    EM + G++P ++TY++LI    K+  M  A +LF +    G
Sbjct: 365 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTG 424

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+   + +LID +C  GN+  A+ LL +M +  V  + VTY  L+ G C+ G++ EA 
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 484

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M + GI P+       +  Y AL+ G  K +  + A ++L++M    I PD   Y
Sbjct: 485 EVFRSMLKDGISPN-------QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 537

Query: 301 FSLIEGIASVDKAAES 316
            S+I G  S  K  E+
Sbjct: 538 GSIIWGHCSQRKLEET 553



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 148/308 (48%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+ +TY S +   CK G L EA ++L  M + G+    VTY  L+DG C  G 
Sbjct: 420 MRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGR 479

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M+K GI P    Y  L+H  +   +M +A  +LK+M E  I PD I Y  
Sbjct: 480 MIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGS 539

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+C     ++   + +EM  +GI    +  T++I    K  +  +A   F+     G
Sbjct: 540 IIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVG 599

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   IV +  LIDG C  G +E A      M  + + P+   Y +L+ G C+   +E A+
Sbjct: 600 VEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAK 659

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M+ RG+ PD  +F        ALI G  K+     A  L+  M    I  D + Y
Sbjct: 660 KLFDEMQCRGMTPDITAF-------TALIDGNLKHGNLQEALVLISRMTELAIEFDLHVY 712

Query: 301 FSLIEGIA 308
            SL+ G +
Sbjct: 713 TSLVSGFS 720



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 150/299 (50%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+   Y + V G  K  R+E+A ++L+QM E  + P  + Y ++I G+C++  
Sbjct: 490 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK 549

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE      +EM  +GI         +I       K  +A +  +EM + G+    +TY +
Sbjct: 550 LEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCV 609

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  + A      M+  G+QP +  YTSLI  L K N +  A +LF+    +G
Sbjct: 610 LIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRG 669

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PDI  F ALIDG+  +GN++ A  L+  M  + +  D   Y +L+ G  + G++ +AR
Sbjct: 670 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 729

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           +  ++M  +GI P+ +           L++   K  + D A EL  EM   G+  +  T
Sbjct: 730 KFFNEMIEKGILPEEV-------LCICLLREYYKRGQLDEAIELKNEMERMGLITESAT 781



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 126/292 (43%), Gaps = 31/292 (10%)

Query: 38  ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
           ++ L P  V+   ++ G      L + F F+    + G   T  +Y +++H +   R   
Sbjct: 124 DSALAPIWVS--KILLGLREDPKLALKF-FKWAGSQVGFRHTTESYCIIVHLVFRARMYT 180

Query: 98  EADDMLKE--------MG-------------EKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +A D +KE        MG                 V  S  +++L + +   G  ++A  
Sbjct: 181 DAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANE 240

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
               M +    P   +   L+  LSK        + F + +  G+ P +  +N +ID  C
Sbjct: 241 CFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLC 300

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G++E +  L  +M  M + PD VTYN+L+ G  + G +EE   L ++MK  G  PD I
Sbjct: 301 KEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDII 360

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                  TYN LI   CK ++   A E   EM + G+ P+  TY +LI+   
Sbjct: 361 -------TYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFC 405


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 172/304 (56%), Gaps = 10/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV PD +T+ + ++G+CKEGRL+E S + ++M   GLVP  VT+ TLIDG C  G 
Sbjct: 309 MESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGK 368

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M+ QG+ P   TYN LI+ L     + EA  ++ EM   G+ PD IT+  
Sbjct: 369 VDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTT 428

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A  +   M+ +GI+   + +T+LI  L ++ R+ +A ++  + L+ G
Sbjct: 429 LIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAG 488

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +  +ID  C  G+++  F LLKEM      P  VTYN LM+G C+QG+++ A+
Sbjct: 489 FKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAK 548

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD M   G+ P+ I       TYN L+ G  K+      +    E   KG+  D  +Y
Sbjct: 549 MLLDAMLNVGVAPNDI-------TYNILLDGHSKHGSSVDVDIFNSE---KGLVTDYASY 598

Query: 301 FSLI 304
            +L+
Sbjct: 599 TALV 602



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P  Y +   + G CK G +  A  + +++ + GL PT V++NTLI G C  G++E  
Sbjct: 243 GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEG 302

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M  +G+ P   T++ LI+ L  E ++ E   +  EM  +G+VP+ +T+  LI+G
Sbjct: 303 FRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDG 362

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A      M+ +G++P ++TY +LI  L K   + EA +L     A G+ PD
Sbjct: 363 QCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPD 422

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + F  LIDG C +G++E A  + + M    +  D+V +  L+ G CR+G+V +A R+L 
Sbjct: 423 KITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLT 482

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M   G KPD  ++                             P  +TYNAL+ GLCK  
Sbjct: 483 DMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQG 542

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   A+ LL  M++ G+ P+D TY  L++G
Sbjct: 543 QMKNAKMLLDAMLNVGVAPNDITYNILLDG 572



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 153/280 (54%), Gaps = 7/280 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           +E +  +  ++ ++G  P    +N L+ G+C  G++  A    DE+ K+G+ PT  ++N 
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI        + E   +   M  +G+ PD  T++ LING C+ G   +   L DEM  +G
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +T+T+LI    K  ++  A + F+  LA+G+ PD+V +NALI+G C  G+++ A 
Sbjct: 349 LVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 408

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+ EM    + PD++T+ TL+ G C+ G +E A  +  +M   GI+ D ++F       
Sbjct: 409 RLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAF------- 461

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
            ALI GLC+      A  +L +M+S G  PDD TY  +I+
Sbjct: 462 TALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVID 501



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 102/185 (55%), Gaps = 7/185 (3%)

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           +++++L+ E++  G  P +  +  L+    K   +  A  +F+    +G+ P +V FN L
Sbjct: 230 ERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTL 289

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I G C +G++E  F L   M+   V PD  T++ L++G C++G+++E   L D+M  RG+
Sbjct: 290 ISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGL 349

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            P+ +       T+  LI G CK  + DLA +  + M+++G+ PD  TY +LI G+  V 
Sbjct: 350 VPNGV-------TFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVG 402

Query: 312 KAAES 316
              E+
Sbjct: 403 DLKEA 407



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 22/241 (9%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           T  +Y  ++H L + R + +A  ++  +   KG    S  ++ ++    R  +   +  L
Sbjct: 118 TLHSYCTMLHFLCLHRMLPQAHSLVSFLVSRKGTNSASTLFSSILRTMPRHHHHHHSVGL 177

Query: 138 -HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
             D +I   +           F L  +N+     +  EN L +     +V    +     
Sbjct: 178 VFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRR-----VVRLRPV----- 227

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
               IER+++L  E+      P    +N LMHG C+ G V  AR + D++ +RG++P  +
Sbjct: 228 ---EIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVV 284

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           SFN        LI G CK+ + +    L   M S+G+ PD  T+ +LI G+    +  E 
Sbjct: 285 SFN-------TLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEG 337

Query: 317 S 317
           S
Sbjct: 338 S 338


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 167/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P+  TY S +S +C  GR  +ASR+L  M E  + P   T++ LID +  +G 
Sbjct: 77  METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 136

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEMVK+ I P+  TY+ LI+   M  ++ EA  M + M  K   PD +TYN 
Sbjct: 137 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 196

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++   +  EM  +G+    +TY  LI  L +      A ++F+  ++ G
Sbjct: 197 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 256

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N L+DG C NG +E+A  + + + R K+ P   TYN ++ G C+ GKVE+  
Sbjct: 257 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 316

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD ++       YN +I G C+    + A+ L +EM   G  P+   Y
Sbjct: 317 DLFCNLSLKGVKPDVVA-------YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 369

Query: 301 FSLI 304
            +LI
Sbjct: 370 NTLI 373



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 175/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G QPD  TYG  V+G+CK G  + A  +L +M++  L P  + YNT+IDG C   +
Sbjct: 7   MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 66

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M E+ I PD  T++ 
Sbjct: 67  MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 126

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEM+ + I P+++TY+SLI      +R+ EA Q+FE  ++K 
Sbjct: 127 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 186

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N LI G C    +E    + +EM +  +  + VTYN L+ G  + G  + A+
Sbjct: 187 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 246

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +  +M   G+ P+ +++N                            PT  TYN +I+G+
Sbjct: 247 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 306

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + +   +L   +  KG+ PD   Y ++I G  
Sbjct: 307 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 342



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 163/277 (58%), Gaps = 7/277 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           ++++M   G  P  VTY  +++G C +G+ ++AF+  ++M +  + P    YN +I  L 
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
             + M +A ++ KEM  KGI P+ +TY+ LI+  C  G    A  L  +MI + I P + 
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           T+++LI    K+ +++EA++L++  + + + P IV +++LI+G C +  ++ A  + + M
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                 PD VTYNTL+ G C+  +VEE   +  +M +RG+  + +       TYN LIQG
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV-------TYNILIQG 235

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           L +  + D+A+E+ +EMVS G+ P+  TY +L++G+ 
Sbjct: 236 LFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 272



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P   TY S ++G C   RL+EA +M E M      P  VTYNTLI G+C    
Sbjct: 147 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 206

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM ++G++    TYN+LI  L        A ++ KEM   G+ P+ +TYN 
Sbjct: 207 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 266

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  +KA  + + +    ++PT+ TY  +I  + K  ++ +   LF N   KG
Sbjct: 267 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 326

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I G C  G+ E A +L KEM      P+   YNTL+  R R G  E + 
Sbjct: 327 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 386

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+  G   D
Sbjct: 387 ELIKEMRSCGFAGD 400



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 28/208 (13%)

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
           +L D M+ KG QP ++TY  ++  L K+     A  L        + P ++++N +IDG 
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C   +++ A +L KEM+   + P+ VTY++L+   C  G+  +A RLL  M  R I PD 
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 256 ISF----------------------------NPTRLTYNALIQGLCKNQEGDLAEELLRE 287
            +F                            +P+ +TY++LI G C +   D A+++   
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAE 315
           MVSK   PD  TY +LI+G     +  E
Sbjct: 182 MVSKHCFPDVVTYNTLIKGFCKYKRVEE 209



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 63/118 (53%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++P  YTY   + GMCK G++E+   +   +   G+ P  V YNT+I G+C KG+ E A 
Sbjct: 292 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 351

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           +   EM + G +P +  YN LI   L +     + +++KEM   G   D+ T  ++ N
Sbjct: 352 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 409



 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +L+  M      PD VTY  +++G C++G  + A  LL++M++  ++P         L Y
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEP-------GVLIY 54

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           N +I GLCK +  D A  L +EM +KGI P+  TY SLI  + +  + +++S
Sbjct: 55  NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDAS 106



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+PD   Y + +SG C++G  EEA  + ++MKE+G +P +  YNTLI      G+ E 
Sbjct: 325 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREA 384

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM   G    AST  L+ + L
Sbjct: 385 SAELIKEMRSCGFAGDASTIGLVTNML 411


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 178/328 (54%), Gaps = 22/328 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLID-GYCN 57
           M+S  V PD +TY + +SG+CK G LE+A  +LE+M   G    P  VTYNTLI+ G C 
Sbjct: 123 MESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICK 182

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
            G++E A    D M   G  P   TYN +IH L +  ++VEA ++LK M      PD +T
Sbjct: 183 DGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVT 239

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N L++G+C+ G   +A  + +EM  + I P ++TYT L+  L +  ++  A  L E  +
Sbjct: 240 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH---------PDEVTYNTLMH 228
            +G +PD++ + +L+DG C +G IE A  L+KEM   ++          P   TYN ++ 
Sbjct: 300 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLG 359

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           G  + G + +A  L+  +  RG  PD +       TYN LI GLCK      A +L  EM
Sbjct: 360 GLIKDGSISKAVSLISDLVARGYVPDVV-------TYNTLIDGLCKANRVREACDLADEM 412

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAES 316
            S G  P+D T  S++ G+  V +  ++
Sbjct: 413 ASLGCFPNDVTLGSVVFGLCRVGRVDDA 440



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 169/325 (52%), Gaps = 19/325 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  PD  TY S +  +C  GR+ EA+ +L+ M  +   P  VT+NTL+DG+C  G 
Sbjct: 196 MKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGM 252

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM ++ I+P   TY +L++ L    ++  A  +L+E+  +G +PD I Y  
Sbjct: 253 LPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTS 312

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI---------QPTMLTYTSLIFVLSKQNRMIEADQ 171
           L++G C+ G  ++A  L  EM  + I          P + TY  ++  L K   + +A  
Sbjct: 313 LVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVS 372

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L  + +A+G +PD+V +N LIDG C    +  A  L  EM  +   P++VT  +++ G C
Sbjct: 373 LISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLC 432

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           R G+V++A  L+ +M R+          P  + Y +LI GLCK+   D A  +L  M  +
Sbjct: 433 RVGRVDDAWSLVVEMSRK-------RHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQ 485

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G+  DD  Y  LI  +    + AE+
Sbjct: 486 GVALDDFAYRKLIVSMIHGGRVAEA 510



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 171/320 (53%), Gaps = 20/320 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+    PD  T+ + + G CK G L  A  +LE+M    ++P  +TY  L++G C  G 
Sbjct: 228 LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQ 287

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI--------- 111
           +++AF   +E+V+QG +P    Y  L+  L    ++ EA  ++KEM  + I         
Sbjct: 288 VQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINM 347

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
           VP   TYNI++ G  + G+  KA SL  +++ +G  P ++TY +LI  L K NR+ EA  
Sbjct: 348 VPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACD 407

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L +   + G  P+ V   +++ G C  G ++ A+SL+ EM R +  P+ V Y +L+ G C
Sbjct: 408 LADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLC 467

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMV 289
           +  ++++A  +LD M+ +G+  D  ++   R    ++I G      G +AE   +  EMV
Sbjct: 468 KSDRMDDACVVLDAMRGQGVALDDFAY---RKLIVSMIHG------GRVAEAMAMYDEMV 518

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           ++G  PD +T  +L E   S
Sbjct: 519 ARGFLPDGSTSKTLEEAAMS 538



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 13/306 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G + D ++Y   +  + K G      ++ + +  +G  P  VT+  LI G C  G    A
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRA 81

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F   + +  + P    +N LIH L  +    +A  + + M    + PD  TYN +I+G
Sbjct: 82  LEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISG 141

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQ--PTMLTYTSLIFV-LSKQNRMIEADQLFENFLAKGM 181
            C+ GN +KA  L +EMI +G +  P ++TY +LI   + K   + EA ++ +     G 
Sbjct: 142 LCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGP 201

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD++ +N++I   C  G +  A  +LK    M   PD VT+NTL+ G C+ G +  A  
Sbjct: 202 APDVITYNSIIHALCVAGRVVEAAEILKT---MSCSPDLVTFNTLLDGFCKAGMLPRALE 258

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +L++M R  I PD I       TY  L+ GLC+  +  +A  LL E+V +G  PD   Y 
Sbjct: 259 VLEEMCRENILPDVI-------TYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYT 311

Query: 302 SLIEGI 307
           SL++G+
Sbjct: 312 SLVDGL 317



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 133/278 (47%), Gaps = 29/278 (10%)

Query: 62  EMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++A  F D   +Q G      +YN L+  L+          + K++   G  P+ +T+ I
Sbjct: 8   DLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKI 67

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+ G A +A      +    + P +  +  LI  L K     +A +LFEN  +  
Sbjct: 68  LIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSR 127

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM--KVHPDEVTYNTLMH-GRCRQGKVE 237
           + PDI  +N +I G C +GN+E+A  LL+EM R   K  PD VTYNTL++ G C+ G VE
Sbjct: 128 VNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVE 187

Query: 238 EARRLLDQMKRRGIKPDHISFN-------------------------PTRLTYNALIQGL 272
           EA  +LD MK  G  PD I++N                         P  +T+N L+ G 
Sbjct: 188 EALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVTFNTLLDGF 247

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           CK      A E+L EM  + I PD  TY  L+ G+  V
Sbjct: 248 CKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV 285



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 6/211 (2%)

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
           + G   D  +YN L++   + G+  +   ++ +++H G  P ++T+  LI    K  +  
Sbjct: 20  QDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAT 79

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            A +         + PD+ +FN LI G   +GN ++A  L + M+  +V+PD  TYNT++
Sbjct: 80  RALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVI 139

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ-GLCKNQEGDLAEELLR 286
            G C+ G +E+AR LL++M RRG K       P  +TYN LI  G+CK+ + + A E+L 
Sbjct: 140 SGLCKSGNLEKARELLEEMIRRGGKS-----APDIVTYNTLINAGICKDGDVEEALEILD 194

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            M   G  PD  TY S+I  +    +  E++
Sbjct: 195 GMKLAGPAPDVITYNSIIHALCVAGRVVEAA 225


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 176/315 (55%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG++P + ++ + ++G+CK   L+E  R+ + M+EN + P   TY+ LI G C +G 
Sbjct: 249 IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A    DEM ++G+ P   T+  LI      R+M  A +   +M   G+ PD + YN 
Sbjct: 309 LDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNT 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G+  KA  L DEM   G++P  +TYT+LI    K+  +  A ++ +    +G
Sbjct: 369 LLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D V F ALI G C +G +  A   L+EM    + PD+ TY  ++ G C++G V+   
Sbjct: 429 VVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGF 488

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL +M+  G KP  I       TYN L+ GLCK  +   A  LL  M++ G+TPDD TY
Sbjct: 489 KLLKEMQINGHKPGVI-------TYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY 541

Query: 301 FSLIEGIASVDKAAE 315
             L+EG     KA +
Sbjct: 542 NILLEGHCKNGKAED 556



 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 168/305 (55%), Gaps = 10/305 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + PD +TY   + G+CKEGRL+ A ++ ++M++ GL P  +T+  LIDG      
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRR 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +M+  G+ P    YN L++ L     + +A  ++ EM   G+ PD ITY  
Sbjct: 344 MDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTT 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G+ + A  +   M  +G+    + +T+LI    +  R+ +A++     +  G
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD   +  +IDG+C  GN++  F LLKEM      P  +TYN LM+G C+QG+++ A 
Sbjct: 464 MKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNAN 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M   G+ PD I       TYN L++G CKN +   AE+LL+    KG+  D   Y
Sbjct: 524 MLLEAMLNLGVTPDDI-------TYNILLEGHCKNGK---AEDLLKLRNEKGLIVDYAYY 573

Query: 301 FSLIE 305
            SL+ 
Sbjct: 574 TSLVS 578



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 153/273 (56%), Gaps = 7/273 (2%)

Query: 34  EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
            ++ E G  P    YN LI+ +C +G++  A    +E+ K+G+ PT  ++N LI+ L   
Sbjct: 212 SEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKS 271

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           R + E   + K M E  I PD  TY++LI+G C+ G    A  L DEM  +G++P  +T+
Sbjct: 272 RNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITF 331

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           T+LI    +  RM  A   +   L  G+ PD+VM+N L++G C  G++ +A  L+ EM  
Sbjct: 332 TALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKM 391

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
           + + PD++TY TL+ G C++G +E A  +   M   G+  D+++F        ALI G C
Sbjct: 392 VGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAF-------TALISGFC 444

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           ++     AE  LREMV  G+ PDD TY  +I+G
Sbjct: 445 RDGRVRDAERTLREMVEAGMKPDDATYTMVIDG 477



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 32/157 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  D+  + + +SG C++GR+ +A R L +M E G+ P   TY  +IDGYC KGN
Sbjct: 424 MNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGN 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV----------------------- 97
           ++M F    EM   G  P   TYN+L++ L  + +M                        
Sbjct: 484 VKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNI 543

Query: 98  ---------EADDMLKEMGEKGIVPDSITYNILINGY 125
                    +A+D+LK   EKG++ D   Y  L++ Y
Sbjct: 544 LLEGHCKNGKAEDLLKLRNEKGLIVDYAYYTSLVSEY 580


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 177/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD  TY S + G  K G LEE + +  +MK+ G VP  +TYN LI+ YC    
Sbjct: 256 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF +  EM   G+ P   TY+ LI     E  M  A  +L +M   G++P+  TY  
Sbjct: 316 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTS 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ GN  +A+ L ++M+  G++  ++TYT+L+  L K  RMIEA+++F + L  G
Sbjct: 376 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++ AL+ G+     +E A  +LK+M    + PD + Y +++ G C Q K+EE +
Sbjct: 436 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 495

Query: 241 RLLDQMKRRGIKP-------------------DHISF---------NPTRLTYNALIQGL 272
            +L++MK RGI                     D ++F           T +TY  LI GL
Sbjct: 496 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 555

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           C+    +LA +    M+S G+ P+   Y SLI+G+ 
Sbjct: 556 CEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLC 591



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 157/293 (53%), Gaps = 7/293 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G LEEA+    +M+    +P A + N L+      GN ++   F ++M+  GI P+  TY
Sbjct: 174 GLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTY 233

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N++I  L  E  +  +  +  +M E G+ PD +TYN LI+GY + G+ ++  SL +EM  
Sbjct: 234 NVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD 293

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P ++TY  LI    K  +M  A + F      G+ P++V ++ LID  C  G ++ 
Sbjct: 294 VGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQG 353

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  LL +M R  + P+E TY +L+   C+ G + EA +LL+ M + G+K + +       
Sbjct: 354 AIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIV------- 406

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           TY AL+ GLCK      AEE+ R M+  GI+P+   Y +L+ G    ++  ++
Sbjct: 407 TYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA 459



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G++P+  TY + +   CKEG ++ A ++L  M+  GL+P   TY +LID  C  GN
Sbjct: 326 MKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGN 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+   ++M++ G+     TY  L+  L    +M+EA+++ + M + GI P+   Y  
Sbjct: 386 LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTA 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY +    + A  +  +M    I+P ++ Y S+I+    Q ++ E   + E   ++G
Sbjct: 446 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 505

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V+   +ID +   G    A +  +EM  + V    VTY  L+ G C  G VE A 
Sbjct: 506 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAV 565

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M   G++P+          Y +LI GLC N   + A++L  EM  +G+TPD   +
Sbjct: 566 DYFCRMLSLGLQPN-------VAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAF 618

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 619 TALIDG 624



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++    P + +    +  + K G  +   +    M   G+ P+  TYN +ID  C +G+
Sbjct: 186 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE +     +M + G+ P   TYN LI        + E   +  EM + G VPD ITYN 
Sbjct: 246 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+     +AF    EM + G++P ++TY++LI    K+  M  A +L  +    G
Sbjct: 306 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTG 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+   + +LID +C  GN+  A+ LL +M +  V  + VTY  L+ G C+ G++ EA 
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M + GI P+       +  Y AL+ G  K +  + A ++L++M    I PD   Y
Sbjct: 426 EVFRSMLKDGISPN-------QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 478

Query: 301 FSLIEGIASVDKAAES 316
            S+I G  S  K  E+
Sbjct: 479 GSIIWGHCSQRKLEET 494



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 147/308 (47%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+ +TY S +   CK G L EA ++L  M + G+    VTY  L+DG C  G 
Sbjct: 361 MRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGR 420

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M+K GI P    Y  L+H  +   +M +A  +LK+M E  I PD I Y  
Sbjct: 421 MIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGS 480

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+C     ++   + +EM  +GI    +  T++I    K  +  +A   F+     G
Sbjct: 481 IIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVG 540

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   IV +  LIDG C  G +E A      M  + + P+   Y +L+ G C    +E A+
Sbjct: 541 VEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAK 600

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M+ RG+ PD  +F        ALI G  K+     A  L+  M    I  D + Y
Sbjct: 601 KLFDEMQCRGMTPDITAF-------TALIDGNLKHGNLQEALVLISRMTELAIEFDLHVY 653

Query: 301 FSLIEGIA 308
            SL+ G +
Sbjct: 654 TSLVSGFS 661



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 133/256 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+   Y + V G  K  R+E+A ++L+QM E  + P  + Y ++I G+C++  
Sbjct: 431 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK 490

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE      +EM  +GI         +I       K  +A +  +EM + G+    +TY +
Sbjct: 491 LEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCV 550

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A      M+  G+QP +  YTSLI  L   N +  A +LF+    +G
Sbjct: 551 LIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRG 610

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PDI  F ALIDG+  +GN++ A  L+  M  + +  D   Y +L+ G  + G++ +AR
Sbjct: 611 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 670

Query: 241 RLLDQMKRRGIKPDHI 256
           +  ++M  +GI P+ +
Sbjct: 671 KFFNEMIEKGILPEEV 686



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSRG+  +     + +    K G+  +A    ++M++ G+  T VTY  LIDG C  G 
Sbjct: 501 MKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGI 560

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E+A  +   M+  G+ P  + Y  LI  L     +  A  +  EM  +G+ PD   +  
Sbjct: 561 VELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTA 620

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + GN ++A  L   M    I+  +  YTSL+   S+   + +A + F   + KG
Sbjct: 621 LIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 680

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           +LP+ V+   L+  +   G ++ A  L  EM+RM
Sbjct: 681 ILPEEVLCICLLREYYKRGQLDEAIELKNEMERM 714



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 120/249 (48%), Gaps = 2/249 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++PD   YGS + G C + +LEE   +LE+MK  G+    V   T+ID Y   G 
Sbjct: 466 MTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 525

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYN 119
              A +F  EM   G+  T  TY +LI + L E  +VE A D    M   G+ P+   Y 
Sbjct: 526 SSDALNFFQEMQDVGVEATIVTYCVLI-DGLCEAGIVELAVDYFCRMLSLGLQPNVAVYT 584

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G C     + A  L DEM  +G+ P +  +T+LI    K   + EA  L       
Sbjct: 585 SLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTEL 644

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            +  D+ ++ +L+ G    G + +A     EM    + P+EV    L+    ++G+++EA
Sbjct: 645 AIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEA 704

Query: 240 RRLLDQMKR 248
             L ++M+R
Sbjct: 705 IELKNEMER 713



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 126/292 (43%), Gaps = 31/292 (10%)

Query: 38  ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
           ++ L P  V+   ++ G      L + F F+    + G   T  +Y +++H +   R   
Sbjct: 65  DSALAPIWVS--KILLGLREDPKLALKF-FKWAGSQVGFRHTTESYCIIVHLVFRARMYT 121

Query: 98  EADDMLKE--------MG-------------EKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +A D +KE        MG                 V  S  +++L + +   G  ++A  
Sbjct: 122 DAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANE 181

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
               M +    P   +   L+  LSK        + F + +  G+ P +  +N +ID  C
Sbjct: 182 CFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLC 241

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G++E +  L  +M  M + PD VTYN+L+ G  + G +EE   L ++MK  G  PD I
Sbjct: 242 KEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDII 301

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                  TYN LI   CK ++   A E   EM + G+ P+  TY +LI+   
Sbjct: 302 -------TYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFC 346


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 166/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD +TY + + G+CK+G L  A  ++ +M+  G  P  +TY  LID +C +G 
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +  DEM  +G+   A  YN LI  L  + K+ +A +M  +M  KG  PD  T+N 
Sbjct: 65  LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 124

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+    ++A  L+ +M+ +G+    +TY +LI    ++  M EA +L  + L +G
Sbjct: 125 LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 184

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  GNIE+  +L ++M    ++P+ ++ N L++G CR G ++ A 
Sbjct: 185 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHAL 244

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L  M  RG+ PD +       TYN+LI GLCK      A  L  ++  +GI PD  TY
Sbjct: 245 EFLRDMIHRGLTPDIV-------TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 297

Query: 301 FSLI 304
            +LI
Sbjct: 298 NTLI 301



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 102/287 (35%), Positives = 154/287 (53%), Gaps = 7/287 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           M E M   G  P   TYNTLI G C KG L  A    +EM  +G  P   TY +LI    
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            E ++ EA ++L EM  KG+  +++ YN LI+  C+    + A ++  +M  KG +P + 
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           T+ SLIF L K N+  EA  L+++ L +G++ + + +N LI      G ++ A  L+ +M
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 180

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                  D++TYN L+   CR G +E+   L + M  +G+ P++IS        N LI G
Sbjct: 181 LFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNIS-------CNILING 233

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LC+      A E LR+M+ +G+TPD  TY SLI G+    +A E+ N
Sbjct: 234 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALN 280



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 144/279 (51%), Gaps = 9/279 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  ++  Y   +S +CK+ ++++A  M   M   G  P   T+N+LI G C    
Sbjct: 75  MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 134

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     +M+ +G++    TYN LIH  L    M EA  ++ +M  +G   D ITYN 
Sbjct: 135 FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 194

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   CR GN +K  +L ++M+ KG+ P  ++   LI  L +   +  A +   + + +G
Sbjct: 195 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 254

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N+LI+G C  G  + A +L  ++    + PD +TYNTL+   C++G  ++A 
Sbjct: 255 LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAH 314

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            LL     RG+      F P  +T+  L+    K  EGD
Sbjct: 315 LLLS----RGVDS---GFIPNEVTWYILVSNFIK--EGD 344



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 129/237 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G +PD +T+ S + G+CK  + EEA  + + M   G++   +TYNTLI  +  +G 
Sbjct: 110 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 169

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G      TYN LI  L     + +   + ++M  KG+ P++I+ NI
Sbjct: 170 MQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNI 229

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING CR GN + A     +MIH+G+ P ++TY SLI  L K  R  EA  LF+    +G
Sbjct: 230 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 289

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           + PD + +N LI  HC  G  + A  LL         P+EVT+  L+    ++G  E
Sbjct: 290 ICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 178/305 (58%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RGV+P++  Y S V+ +C +GR+ +A  ++E M  + ++     Y T++ G+CNKG+
Sbjct: 320 MVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGD 379

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A  + DEM ++G+     TY  LI+ L    ++ EA+ +L+EM  + +  D +TY +
Sbjct: 380 LVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTV 439

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC+ G   +AF +H+ M+ +G+ P ++TYT+L   L KQ  +  A++L      KG
Sbjct: 440 LVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   +N+LI+G C  G +++A   + +MD   + PD  TY TL+   C+ G+++ A 
Sbjct: 500 LELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAH 559

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M   GIK       PT +TYN L+ G C +   +  ++LL  M+ K I P+  TY
Sbjct: 560 DLLQEMLDNGIK-------PTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTY 612

Query: 301 FSLIE 305
            SL++
Sbjct: 613 NSLMK 617



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+  D  TY + ++G+C+ G L+EA ++L++M    L    VTY  L+DGYC +G 
Sbjct: 390 MQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGK 449

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   + MV++G+ P   TY  L   L  +  +  A+++L EM  KG+  ++ TYN 
Sbjct: 450 MAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 509

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G   +A     +M   G++P + TYT+LI  L K   +  A  L +  L  G
Sbjct: 510 LINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNG 569

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV +N L++G C +G +E    LL+ M    +HP+  TYN+LM   C    ++   
Sbjct: 570 IKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTT 629

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  R ++P+         TYN LI+G CK +    A+    EM+ KG     ++Y
Sbjct: 630 EIYKGMCSRNVEPNEN-------TYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSY 682

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +    K  E+
Sbjct: 683 SALIRLLNKKKKFVEA 698



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 159/300 (53%), Gaps = 7/300 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TYG  + G C  G LE A ++L+ M   G+ P A  Y +++   C+KG +  A + 
Sbjct: 292 PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTV 351

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            ++MV   ++   + Y  ++     +  +V A     EM  KG+  D +TY  LING CR
Sbjct: 352 VEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCR 411

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K+A  +  EM+ + +    +TYT L+    K+ +M EA Q+    + +G+ P++V 
Sbjct: 412 AGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVT 471

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + AL DG C  G+++ A  LL EM    +  +  TYN+L++G C+ G +++A R +  M 
Sbjct: 472 YTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMD 531

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G+KPD         TY  LI  LCK+ E D A +LL+EM+  GI P   TY  L+ G 
Sbjct: 532 AAGLKPD-------VYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGF 584



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 158/298 (53%), Gaps = 7/298 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D   Y + +SG C +G L  A R  ++M+  GL    VTY TLI+G C  G L+ A    
Sbjct: 363 DEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVL 422

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM+ + +     TY +L+       KM EA  +   M ++G+ P+ +TY  L +G C+ 
Sbjct: 423 QEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQ 482

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G+ + A  L  EM +KG++    TY SLI  L K   + +A +   +  A G+ PD+  +
Sbjct: 483 GDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTY 542

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             LID  C +G ++RA  LL+EM    + P  VTYN LM+G C  G+VE  ++LL+ M  
Sbjct: 543 TTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLE 602

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + I P     N T  TYN+L++  C         E+ + M S+ + P++NTY  LI+G
Sbjct: 603 KNIHP-----NAT--TYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKG 653



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 126/211 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++PD YTY + +  +CK G L+ A  +L++M +NG+ PT VTYN L++G+C  G 
Sbjct: 530 MDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGR 589

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      + M+++ I P A+TYN L+ +  +   M    ++ K M  + + P+  TYNI
Sbjct: 590 VEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNI 649

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  + K+A   H+EMI KG + T  +Y++LI +L+K+ + +EA +LF +   +G
Sbjct: 650 LIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEG 709

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
              +  ++N  ID +    N+E   +L  E+
Sbjct: 710 FTAEPDVYNFYIDFNFNEDNLEATLALCDEL 740



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 6/265 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV P+  TY +   G+CK+G ++ A+ +L +M   GL   A TYN+LI+G C  G 
Sbjct: 460 MVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 519

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     +M   G+ P   TY  LI  L    ++  A D+L+EM + GI P  +TYN+
Sbjct: 520 LDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNV 579

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L + M+ K I P   TY SL+      N M    ++++   ++ 
Sbjct: 580 LMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRN 639

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +N LI GHC   +++ A     EM          +Y+ L+    ++ K  EAR
Sbjct: 640 VEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEAR 699

Query: 241 RLLDQMKRRGI--KPD----HISFN 259
           +L   M++ G   +PD    +I FN
Sbjct: 700 KLFHDMRKEGFTAEPDVYNFYIDFN 724



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 39/307 (12%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           ++ +L ++++ G+ P+    N ++        +E+     D+ V         +YN+L+ 
Sbjct: 219 SAPLLRRVRQYGISPSPEACNAVLSRLPLDEAIELFQGLPDKNV--------CSYNILLK 270

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            L    ++ +A  +  EM      PD +TY ILI+GYC  G  + A  L D+M+ +G++P
Sbjct: 271 VLCGAGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEP 327

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
               YTS++ +L  + R+ +A  + E+ +   ++ D  ++  ++ G C  G++  A    
Sbjct: 328 NATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWF 387

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------- 259
            EM R  +  D VTY TL++G CR G+++EA ++L +M  R +  D +++          
Sbjct: 388 DEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKR 447

Query: 260 -------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                              P  +TY AL  GLCK  +   A ELL EM +KG+  +  TY
Sbjct: 448 GKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTY 507

Query: 301 FSLIEGI 307
            SLI G+
Sbjct: 508 NSLINGL 514



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 35/181 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTL--------- 51
           M   G++P   TY   ++G C  GR+E   ++LE M E  + P A TYN+L         
Sbjct: 565 MLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNN 624

Query: 52  --------------------------IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                     I G+C   +++ A  F +EM+++G   TAS+Y+ 
Sbjct: 625 MKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSA 684

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L  ++K VEA  +  +M ++G   +   YN  I+      N +   +L DE++   
Sbjct: 685 LIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEAS 744

Query: 146 I 146
           I
Sbjct: 745 I 745



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 14/167 (8%)

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           +Y  L+ VL    R+ +A QLF+   +    PD+V +  LI G+C  G +E A  LL +M
Sbjct: 264 SYNILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLDDM 320

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
               V P+   Y +++   C +G+V +A  +++ M    +  D          Y  ++ G
Sbjct: 321 VARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEA-------VYTTVLSG 373

Query: 272 LCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            C   +GDL  A     EM  KG+  D  TY +LI G+    +  E+
Sbjct: 374 FC--NKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEA 418



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 46/112 (41%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR V+P+  TY   + G CK   ++EA     +M E G   TA +Y+ LI     K  
Sbjct: 635 MCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKK 694

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
              A     +M K+G       YN  I     E  +     +  E+ E  IV
Sbjct: 695 FVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASIV 746


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 164/291 (56%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P  Y +   +   CKEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM EA++ML EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ +G  P ++TY +LI+ L ++  + +A  L E  + KG+ PD
Sbjct: 251 HCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E  F L K M R  +  DEVTY  L+ G CR+G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD+        TY  ++   CK  +   A +LLREM   G  P
Sbjct: 371 EMLTVGLKPDNG-------TYTMIMNEFCKTGDVKTASKLLREMQRNGPVP 414



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 169/329 (51%), Gaps = 29/329 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   +    + G + +A +     K++ +     T   +++      
Sbjct: 56  LETKGTQISDLYVFSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLR 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
              + + F  E+++ G  P+   +N+L+H    E +M  A  +   + +  + P  +++N
Sbjct: 116 YFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+++M EA+++    L  
Sbjct: 176 TLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M      PD +TYNTL++G CR+G + +A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQG 271
           R L+++M  +G+KPD I++                                +TY ALI G
Sbjct: 296 RDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTY 300
           LC+      AE++LREM++ G+ PD+ TY
Sbjct: 356 LCREGRAGDAEKMLREMLTVGLKPDNGTY 384



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 135/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++EA+ ML +M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGK 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ QG +P   TYN LI+ L     + +A D+++EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ +  F L   MI + I+   +TYT+LI  L ++ R  +A+++    L  G
Sbjct: 317 LIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +++  C  G+++ A  LL+EM R    P  VT
Sbjct: 377 LKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 173/312 (55%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD +TY + +  +CK GR  EA ++ + M + G  P + TY TL+ GY  +G+L   
Sbjct: 303 GVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKM 362

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV+ GI P    +N+LI       K+ +A  +  +M  +G+ PD++TY I+++ 
Sbjct: 363 HHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDA 422

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G    A +    +I +G+ P  + + +LI  L  +++  +A++L    + +G+ P+
Sbjct: 423 LCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPN 482

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + FN L++  C  G + RA ++   M R+ V  D +TYNTL+ G C  GKV+EA +LL+
Sbjct: 483 NIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLE 542

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M   G+KP+ +       TYN +I G CKN   + A  L R+M SKG+ P   TY +++
Sbjct: 543 GMVLDGVKPNEV-------TYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTIL 595

Query: 305 EGIASVDKAAES 316
           +G+    + A +
Sbjct: 596 QGLFQARRTAAA 607



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 174/352 (49%), Gaps = 34/352 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-----KENGLVPTAVTYNTLIDGY 55
           M   G  P+ ++Y   + G+C E R ++A  +L  M        G  P  V+YNT+I+G 
Sbjct: 153 MPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGL 212

Query: 56  CNKG-NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
             +G  L+ A+   D+M+ QG+ P   TYN +I  L   R M +A  +L  M + G +P+
Sbjct: 213 LREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPN 272

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            IT+N L++GYC  G    A  +   M   G++P + TY +L+  L K  R +EA ++F+
Sbjct: 273 RITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFD 332

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           + + +G  P+   +  L+ G+ T G++ +   LL  M R  + PD   +N L+    + G
Sbjct: 333 SMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHG 392

Query: 235 KVEEARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYN 266
           KV++A  L  +M+R+G+ PD +++                             P  + + 
Sbjct: 393 KVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFR 452

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            LI GLC   + D AEEL  EM+ +GI P++  + +L+  +      A + N
Sbjct: 453 NLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKN 504



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 164/334 (49%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  TY S +S + K   +++A+ +L +M +NG +P  +T+N+L+ GYC+ G 
Sbjct: 229 MLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGK 288

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M + G+ P   TYN L+  L    + +EA  +   M ++G  P+S TY  
Sbjct: 289 PNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGT 348

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY   G+  K   L D M+  GIQP    +  LI   +K  ++ +A  LF     +G
Sbjct: 349 LLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQG 408

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +  ++D  C  G ++ A +    +    + PD V +  L+HG C + K ++A 
Sbjct: 409 LNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAE 468

Query: 241 RLLDQMKRRGIKPDHISFNPTR----------------------------LTYNALIQGL 272
            L  +M  RGI P++I FN                               +TYN LI G 
Sbjct: 469 ELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGY 528

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C + + D A +LL  MV  G+ P++ TY ++I G
Sbjct: 529 CLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMING 562



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 11/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD+ TYG  +  +C  G++++A     ++   GL P AV +  LI G C +  
Sbjct: 404 MRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDK 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM+ +GI P    +N L++ L  E  +  A ++   M    +  D ITYN 
Sbjct: 464 WDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNT 523

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC  G   +A  L + M+  G++P  +TY ++I    K  R+ +A  LF    +KG
Sbjct: 524 LIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKG 583

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV ++ ++ G         A  L   M +  +  D  TYN ++ G C+    ++A 
Sbjct: 584 VNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDAL 643

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+   +         I F+    T+N +I  L K    D A++L   ++++G+ P+  TY
Sbjct: 644 RIFQNLYL-------IDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTY 696

Query: 301 F----SLIE 305
           +    SLIE
Sbjct: 697 WLMMKSLIE 705



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 150/309 (48%), Gaps = 20/309 (6%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE--M 63
           V P+  TY   +    + G L+ A   L ++  +G    A+T++ L+   C+K      M
Sbjct: 87  VPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAM 146

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-----GEKGIVPDSITY 118
             + R  M   G  P   +Y +L+  L  E +  +A  +L  M        G  PD ++Y
Sbjct: 147 DIALR-RMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSY 205

Query: 119 NILINGYCRCG-NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           N +ING  R G     A+ L D+M+ +G+ P ++TY S+I  LSK   M +A  +    +
Sbjct: 206 NTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMV 265

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G +P+ +  N+L+ G+C++G    A  + K M R  V PD  TYNTLM   C+ G+  
Sbjct: 266 KNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSM 325

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITP 295
           EAR++ D M +RG KP+         TY  L+ G     EG L +   LL  MV  GI P
Sbjct: 326 EARKIFDSMVKRGHKPNSA-------TYGTLLHGYA--TEGSLVKMHHLLDMMVRNGIQP 376

Query: 296 DDNTYFSLI 304
           D   +  LI
Sbjct: 377 DHYIFNILI 385



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 146/274 (53%), Gaps = 14/274 (5%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P  +TY+ +ID     G+L++AF+    +++ G    A T++ L+  L  +++  EA D+
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDI 148

Query: 103 -LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS-LHDEMI----HKGIQPTMLTYTSL 156
            L+ M   G  P+  +Y IL+ G C    +++A   LH  M+      G  P +++Y ++
Sbjct: 149 ALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTV 208

Query: 157 IFVLSKQNRMIE-ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           I  L ++ R ++ A  LF+  L +G+ PD+V +N++I        +++A  +L  M +  
Sbjct: 209 INGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNG 268

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
             P+ +T+N+L+HG C  GK  +A  +  +M R G++PD         TYN L+  LCKN
Sbjct: 269 AMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPD-------VFTYNTLMGYLCKN 321

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
                A ++   MV +G  P+  TY +L+ G A+
Sbjct: 322 GRSMEARKIFDSMVKRGHKPNSATYGTLLHGYAT 355



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 122/241 (50%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQ D  TY + + G C  G+++EA+++LE M  +G+ P  VTYNT+I+GYC  G +E AF
Sbjct: 514 VQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAF 573

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S   +M  +G+ P   TY+ ++  L   R+   A ++   M + GI  D  TYNI++ G 
Sbjct: 574 SLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGL 633

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+      A  +   +          T+  +I  L K  R  EA  LF + LA+G++P++
Sbjct: 634 CQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNV 693

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +  ++      G +E    L   +++     +    N L+    ++G+V +A   L +
Sbjct: 694 VTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSK 753

Query: 246 M 246
           +
Sbjct: 754 I 754



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 14/213 (6%)

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA- 169
           + P+ ITY+++I+   R G+   AF+    +I  G     +T++ L+  L  + R  EA 
Sbjct: 87  VPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAM 146

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-----DRMKVHPDEVTYN 224
           D         G  P++  +  L+ G C     ++A  LL  M      R    PD V+YN
Sbjct: 147 DIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYN 206

Query: 225 TLMHGRCRQGK-VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           T+++G  R+G+ ++ A  L DQM  +G+ PD +       TYN++I  L K +  D A  
Sbjct: 207 TVINGLLREGRQLDTAYHLFDQMLDQGLSPDVV-------TYNSIISALSKARAMDKAAV 259

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +L  MV  G  P+  T+ SL+ G  S  K  ++
Sbjct: 260 VLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDA 292



 Score = 45.8 bits (107), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 14/154 (9%)

Query: 168 EADQLFENFLAKGMLPDIVMFN-ALIDGHCTNGNIERAFSLLKEM---DRMKVHPDEVTY 223
            A   F+  L +     IV  N AL D    +  +  A SL + M    R KV P+ +TY
Sbjct: 37  HAHHAFDELLHRPTTSSIVDLNRALSDAARHSPAV--AISLFRRMVMVARPKVPPNLITY 94

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC-KNQEGDLAE 282
           + ++    R G ++ A   L ++ R G   + I+F+P       L++ LC K +  +  +
Sbjct: 95  SVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSP-------LLKALCDKKRTSEAMD 147

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             LR M   G TP+  +Y  L++G+   +++ ++
Sbjct: 148 IALRRMPVLGCTPNVFSYTILLKGLCDENRSQQA 181


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/314 (36%), Positives = 174/314 (55%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+  + +TY  ++ G+C+ GRL EA R+++ M+    VP  VTYNTLI G C K   + 
Sbjct: 215 RGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQE 273

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +   M+ QG +P   TYN +I        + EA ++LK+   KG VPD +TY  LIN
Sbjct: 274 AMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLIN 333

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G+ ++A  L +E   KGI+P ++ Y SL+  L  Q  ++ A Q+      +G  P
Sbjct: 334 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 393

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I+G C  GNI  A  ++ +       PD  T+NTL+ G C++ K++ A +L+
Sbjct: 394 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 453

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   GI PD I       TYN+++ GLCK  + +   E  +EM+ KG  P+  TY  L
Sbjct: 454 ERMWEYGIAPDTI-------TYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNIL 506

Query: 304 IEGIASVDKAAESS 317
           IE     +K  E+S
Sbjct: 507 IENFCRSNKMEEAS 520



 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 177/344 (51%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +TY + + G CK   ++EA+ +L+     G VP  VTY +LI+G C +G+
Sbjct: 281 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +E   +GI P    YN L+  L ++  ++ A  ++ EM E+G  PD  TYNI
Sbjct: 341 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNI 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ GN   A  + ++ I KG  P + T+ +LI    K+ ++  A QL E     G
Sbjct: 401 VINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N++++G C  G +       +EM     HP+ +TYN L+   CR  K+EEA 
Sbjct: 461 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEAS 520

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +++ +M + G+ PD +SFN                             T  T+N LI   
Sbjct: 521 KVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 580

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
                  +AE++  EM+SKG   D  TY  LI+G    A+VD+A
Sbjct: 581 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRA 624



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 164/307 (53%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++  V PD  TY + + G+CK+   +EA   L +M   G +P   TYNT+IDGYC    
Sbjct: 247 MRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     + V +G +P   TY  LI+ L  E  +  A ++  E   KGI PD + YN 
Sbjct: 306 VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  + +EM  +G  P + TY  +I  L K   + +A  +  + + KG
Sbjct: 366 LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+  FN LIDG+C    ++ A  L++ M    + PD +TYN++++G C+ GKV E  
Sbjct: 426 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M  +G  P     NP  +TYN LI+  C++ + + A +++ +M  +G+ PD  ++
Sbjct: 486 ETFQEMILKGCHP-----NP--ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSF 538

Query: 301 FSLIEGI 307
            +LI G 
Sbjct: 539 NTLIYGF 545



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 7/306 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +++G++PD   Y S V G+C +G +  A +++ +M E G  P   TYN +I+G C  GN+
Sbjct: 352 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 411

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    ++ + +G +P   T+N LI       K+  A  +++ M E GI PD+ITYN +
Sbjct: 412 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSV 471

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +NG C+ G   +      EMI KG  P  +TY  LI    + N+M EA ++      +G+
Sbjct: 472 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 531

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD V FN LI G C NG++E A+ L ++++         T+NTL+     +  +  A +
Sbjct: 532 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 591

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           + D+M  +G + D         TY  LI G CK    D A   L EM+ KG  P  +T+ 
Sbjct: 592 IFDEMLSKGHRAD-------SYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFG 644

Query: 302 SLIEGI 307
            +I  +
Sbjct: 645 RVINSL 650



 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 161/317 (50%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV PD +T+   +   C   R   A R+L  +   G    AV Y T++ G    G+
Sbjct: 111 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGH 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M+   + P  + +N ++H L     ++EA  +L ++ ++G+  +  TYNI
Sbjct: 167 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G C  G   +A  L D M    + P ++TY +LI  L K++   EA       + +G
Sbjct: 227 WIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 285

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD   +N +IDG+C    ++ A  LLK+       PD+VTY +L++G C +G VE A 
Sbjct: 286 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERAL 345

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++ + +GIKPD +        YN+L++GLC       A +++ EM  +G  PD  TY
Sbjct: 346 ELFNEAQAKGIKPDIV-------VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 398

Query: 301 FSLIEGIASVDKAAESS 317
             +I G+  +   ++++
Sbjct: 399 NIVINGLCKMGNISDAT 415



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  PD +T+ + + G CK  +L+ A +++E+M E G+ P  +TYN++++G C  G +  
Sbjct: 424 KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNE 483

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 EM+ +G  P   TYN+LI       KM EA  ++ +M ++G+ PD++++N LI 
Sbjct: 484 VNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIY 543

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+CR G+ + A+ L  ++  KG   T  T+ +LI   S +  M  A+++F+  L+KG   
Sbjct: 544 GFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRA 603

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +  LIDG C   N++RA+  L EM +    P   T+  +++      +V +A  ++
Sbjct: 604 DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGII 663

Query: 244 DQMKRRGIKPD 254
             M + G+ P+
Sbjct: 664 HIMVKIGVVPE 674



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY   ++G+CK G + +A+ ++      G +P   T+NTLIDGYC +  
Sbjct: 386 MAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLK 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M + GI P   TYN +++ L    K+ E ++  +EM  KG  P+ ITYNI
Sbjct: 446 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNI 505

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR    ++A  +  +M  +G+ P  +++ +LI+   +   +  A  LF+    KG
Sbjct: 506 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 565

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                  FN LI       N+  A  +  EM       D  TY  L+ G C+   V+ A 
Sbjct: 566 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 625

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M ++G       F P+  T+  +I  L  N     A  ++  MV  G+ P+    
Sbjct: 626 MHLVEMIKKG-------FIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE---- 674

Query: 301 FSLIEGIASVDK 312
             +++ I + DK
Sbjct: 675 --VVDTILNADK 684



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 15/309 (4%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y + +    + GRL +A    E+M      P A  YN ++D   +    + A      M+
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
             G+ P   T+ + +    +  +   A  +L+ +  +G    ++ Y  ++ G    G+  
Sbjct: 113 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTH 168

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A  L D+M+H  + P +  +  ++  L K+  ++EA  L    + +GM  ++  +N  I
Sbjct: 169 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 228

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
            G C  G +  A  L+  M R    PD VTYNTL+ G C++   +EA   L +M  +G  
Sbjct: 229 RGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 287

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS--- 309
           PD         TYN +I G CK      A ELL++ V KG  PD  TY SLI G+ +   
Sbjct: 288 PD-------DFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 340

Query: 310 VDKAAESSN 318
           V++A E  N
Sbjct: 341 VERALELFN 349


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 165/297 (55%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY + ++G+CKE RL +A  +L +M+E G+ P   T+ TLI GYC +G 
Sbjct: 42  MVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK 101

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D M+ Q + P   TYN LI  +  +  + +A+D+  +M  + I P+ +TY+I
Sbjct: 102 LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 161

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C  G  + AF   DEMI+KGI P ++TY S+I    +   + +  +  +  +   
Sbjct: 162 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 221

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N LI G+     +  AF LL  M++ KV PD VTYN L++G    G V+EA 
Sbjct: 222 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 281

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            + ++M  +GI+PD       R TY ++I G         A +L  EM+ +G  PDD
Sbjct: 282 WIFEKMCAKGIEPD-------RYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 331



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 179/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD   Y   + G C+ G + +A R+ ++M   G +P  VTYNTL++G C +  
Sbjct: 7   MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 66

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM ++G+ P   T+  LIH   +E K+ +A  +   M  + + PD +TYN 
Sbjct: 67  LLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNT 126

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR G+  KA  L D+M  + I P  +TY+ LI    ++ ++ +A    +  + KG
Sbjct: 127 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKG 186

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+I+ +N++I G+C +GN+ +    L++M   KV PD +TYNTL+HG  ++ K+ +A 
Sbjct: 187 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 246

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL+ M++  ++PD +       TYN LI G   +     A  +  +M +KGI PD  TY
Sbjct: 247 KLLNMMEKEKVQPDVV-------TYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 299

Query: 301 FSLIEGIASVDKAAES 316
            S+I G  +   + E+
Sbjct: 300 MSMINGHVTAGNSKEA 315


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/314 (36%), Positives = 174/314 (55%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+  + +TY  ++ G+C+ GRL EA R+++ M+    VP  VTYNTLI G C K   + 
Sbjct: 216 RGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQE 274

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +   M+ QG +P   TYN +I        + EA ++LK+   KG VPD +TY  LIN
Sbjct: 275 AMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLIN 334

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G+ ++A  L +E   KGI+P ++ Y SL+  L  Q  ++ A Q+      +G  P
Sbjct: 335 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 394

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I+G C  GNI  A  ++ +       PD  T+NTL+ G C++ K++ A +L+
Sbjct: 395 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 454

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   GI PD I       TYN+++ GLCK  + +   E  +EM+ KG  P+  TY  L
Sbjct: 455 ERMWEYGIAPDTI-------TYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNIL 507

Query: 304 IEGIASVDKAAESS 317
           IE     +K  E+S
Sbjct: 508 IENFCRSNKMEEAS 521



 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 177/344 (51%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +TY + + G CK   ++EA+ +L+     G VP  VTY +LI+G C +G+
Sbjct: 282 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +E   +GI P    YN L+  L ++  ++ A  ++ EM E+G  PD  TYNI
Sbjct: 342 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNI 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ GN   A  + ++ I KG  P + T+ +LI    K+ ++  A QL E     G
Sbjct: 402 VINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N++++G C  G +       +EM     HP+ +TYN L+   CR  K+EEA 
Sbjct: 462 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEAS 521

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +++ +M + G+ PD +SFN                             T  T+N LI   
Sbjct: 522 KVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 581

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
                  +AE++  EM+SKG   D  TY  LI+G    A+VD+A
Sbjct: 582 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRA 625



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 164/307 (53%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++  V PD  TY + + G+CK+   +EA   L +M   G +P   TYNT+IDGYC    
Sbjct: 248 MRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 306

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     + V +G +P   TY  LI+ L  E  +  A ++  E   KGI PD + YN 
Sbjct: 307 VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS 366

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  + +EM  +G  P + TY  +I  L K   + +A  +  + + KG
Sbjct: 367 LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKG 426

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+  FN LIDG+C    ++ A  L++ M    + PD +TYN++++G C+ GKV E  
Sbjct: 427 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 486

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M  +G  P     NP  +TYN LI+  C++ + + A +++ +M  +G+ PD  ++
Sbjct: 487 ETFQEMILKGCHP-----NP--ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSF 539

Query: 301 FSLIEGI 307
            +LI G 
Sbjct: 540 NTLIYGF 546



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 7/306 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +++G++PD   Y S V G+C +G +  A +++ +M E G  P   TYN +I+G C  GN+
Sbjct: 353 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 412

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    ++ + +G +P   T+N LI       K+  A  +++ M E GI PD+ITYN +
Sbjct: 413 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSV 472

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +NG C+ G   +      EMI KG  P  +TY  LI    + N+M EA ++      +G+
Sbjct: 473 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 532

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD V FN LI G C NG++E A+ L ++++         T+NTL+     +  +  A +
Sbjct: 533 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 592

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           + D+M  +G + D         TY  LI G CK    D A   L EM+ KG  P  +T+ 
Sbjct: 593 IFDEMLSKGHRAD-------SYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFG 645

Query: 302 SLIEGI 307
            +I  +
Sbjct: 646 RVINSL 651



 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 161/317 (50%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV PD +T+   +   C   R   A R+L  +   G    AV Y T++ G    G+
Sbjct: 112 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGH 167

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M+   + P  + +N ++H L     ++EA  +L ++ ++G+  +  TYNI
Sbjct: 168 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 227

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G C  G   +A  L D M    + P ++TY +LI  L K++   EA       + +G
Sbjct: 228 WIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD   +N +IDG+C    ++ A  LLK+       PD+VTY +L++G C +G VE A 
Sbjct: 287 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERAL 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++ + +GIKPD +        YN+L++GLC       A +++ EM  +G  PD  TY
Sbjct: 347 ELFNEAQAKGIKPDIV-------VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 399

Query: 301 FSLIEGIASVDKAAESS 317
             +I G+  +   ++++
Sbjct: 400 NIVINGLCKMGNISDAT 416



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  PD +T+ + + G CK  +L+ A +++E+M E G+ P  +TYN++++G C  G +  
Sbjct: 425 KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNE 484

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 EM+ +G  P   TYN+LI       KM EA  ++ +M ++G+ PD++++N LI 
Sbjct: 485 VNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIY 544

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+CR G+ + A+ L  ++  KG   T  T+ +LI   S +  M  A+++F+  L+KG   
Sbjct: 545 GFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRA 604

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +  LIDG C   N++RA+  L EM +    P   T+  +++      +V +A  ++
Sbjct: 605 DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGII 664

Query: 244 DQMKRRGIKPD 254
             M + G+ P+
Sbjct: 665 HIMVKIGVVPE 675



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY   ++G+CK G + +A+ ++      G +P   T+NTLIDGYC +  
Sbjct: 387 MAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLK 446

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M + GI P   TYN +++ L    K+ E ++  +EM  KG  P+ ITYNI
Sbjct: 447 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNI 506

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR    ++A  +  +M  +G+ P  +++ +LI+   +   +  A  LF+    KG
Sbjct: 507 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 566

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                  FN LI       N+  A  +  EM       D  TY  L+ G C+   V+ A 
Sbjct: 567 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 626

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M ++G       F P+  T+  +I  L  N     A  ++  MV  G+ P+    
Sbjct: 627 MHLVEMIKKG-------FIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE---- 675

Query: 301 FSLIEGIASVDK 312
             +++ I + DK
Sbjct: 676 --VVDTILNADK 685



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 15/309 (4%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y + +    + GRL +A    E+M      P A  YN ++D   +    + A      M+
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
             G+ P   T+ + +    +  +   A  +L+ +  +G    ++ Y  ++ G    G+  
Sbjct: 114 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTH 169

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A  L D+M+H  + P +  +  ++  L K+  ++EA  L    + +GM  ++  +N  I
Sbjct: 170 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 229

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
            G C  G +  A  L+  M R    PD VTYNTL+ G C++   +EA   L +M  +G  
Sbjct: 230 RGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 288

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS--- 309
           PD         TYN +I G CK      A ELL++ V KG  PD  TY SLI G+ +   
Sbjct: 289 PD-------DFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 341

Query: 310 VDKAAESSN 318
           V++A E  N
Sbjct: 342 VERALELFN 350


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 174/306 (56%), Gaps = 11/306 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ T+ + + G+C EG++ EA  + ++M   G  P  VTY TLI+G C    +  A
Sbjct: 110 GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEA 169

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           F+   EM+ +GI P   TYN LIH L  L E K V    ++ EM +  I+PD  T N ++
Sbjct: 170 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT--LMNEMVDSKIMPDVFTLNTVV 227

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G   +A  + D MIH+G++P ++TY +L+     +N +  A ++F+  + K  +
Sbjct: 228 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 287

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            +++ +N LI+G+C   ++++A  L +EM R ++ P+ VTYNTL+HG C  G++++A  L
Sbjct: 288 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 347

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M  RG  PD +       TY  L   LCKN+  D A  LL+ +      PD   Y +
Sbjct: 348 FHEMVARGQIPDLV-------TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 400

Query: 303 LIEGIA 308
           +++G+ 
Sbjct: 401 ILDGMC 406



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 176/353 (49%), Gaps = 46/353 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK+ ++ EA  +  +M   G+ P  VTYN+LI G C    
Sbjct: 141 MIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCE 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN- 119
            +   +  +EMV   IMP   T N ++  L  E  + EA D++  M  +G+ P+ +TYN 
Sbjct: 201 WKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNA 260

Query: 120 ----------------------------------ILINGYCRCGNAKKAFSLHDEMIHKG 145
                                              LINGYC+  +  KA  L +EM  + 
Sbjct: 261 LMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE 320

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +TY +LI  L    R+ +A  LF   +A+G +PD+V +  L D  C N ++++A 
Sbjct: 321 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 380

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +LLK ++     PD   Y T++ G CR G++E+AR L   +  +G++P+         TY
Sbjct: 381 ALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPN-------VWTY 433

Query: 266 NALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N +I GLCK  +G LAE  +L  EM   G +P+D TY  +  G    ++A  +
Sbjct: 434 NIMIHGLCK--QGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRT 484



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 173/327 (52%), Gaps = 16/327 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++ +C   R++ A   L ++ + G  P A T+ TLI G C +G 
Sbjct: 71  MDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+ +G  P   TY  LI+ L  +R++ EA ++  EM  KGI P+ +TYN 
Sbjct: 131 IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNS 190

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+    K   +L +EM+   I P + T  +++  L K+  + EA  + +  + +G
Sbjct: 191 LIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRG 250

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +NAL+DGHC    ++ A  +   M       + ++YNTL++G C+   V++A 
Sbjct: 251 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAM 310

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M R+ + P+ +       TYN LI GLC       A  L  EMV++G  PD  TY
Sbjct: 311 YLFEEMSRQELTPNTV-------TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTY 363

Query: 301 FSL---------IEGIASVDKAAESSN 318
            +L         ++   ++ KA E SN
Sbjct: 364 RTLSDYLCKNRHLDKAMALLKAIEGSN 390



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 155/288 (53%), Gaps = 7/288 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ PD +TY S +  +C     +  + +L +M  + ++P  V ++T++D  C +G 
Sbjct: 664 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGM 723

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    D M+K+G+ P   TY  L+    +  +M EA  +   M  KG VP+  +YNI
Sbjct: 724 IAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNI 783

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L ++M  +G+    +TY +LI  L    R+  A  LF   +A G
Sbjct: 784 LINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 843

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  L+D  C N ++  A  LLK ++   +  D + YN  + G CR G++E AR
Sbjct: 844 QIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAAR 903

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
            L   +  +G++PD       R TYN +I GLCK    D A +L R+M
Sbjct: 904 DLFSNLSSKGLQPD------VR-TYNIMIHGLCKRGLLDEANKLFRKM 944



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 169/338 (50%), Gaps = 45/338 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++  C   RL  A  +L ++ + G  P  VTY TL++G C    
Sbjct: 607 MDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC---- 662

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
                    +M+ +GI P   TYN LIH L  L E K V    +L EM    I+P+ + +
Sbjct: 663 ---------KMITKGISPDIFTYNSLIHALCNLCEWKHVTT--LLNEMVNSKIMPNVVVF 711

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + +++  C+ G    A  + D MI +G++P ++TYT+L+     ++ M EA ++F+  + 
Sbjct: 712 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 771

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG +P++  +N LI+G+C    +++A  LL++M    +  D VTYNTL+HG C  G+++ 
Sbjct: 772 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQH 831

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  L  +M   G  PD +++                            +   L YN  I 
Sbjct: 832 AIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAID 891

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           G+C+  E + A +L   + SKG+ PD  TY  +I G+ 
Sbjct: 892 GMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLC 929



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 151/309 (48%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K         +  QM   G+ P   T   +I+  C+   ++ AFS 
Sbjct: 43  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 102

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P A+T+  LI  L +E K+ EA  +  +M  +G  P+ +TY  LING C+
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                +AF++  EMI KGI P ++TY SLI  L K         L    +   ++PD+  
Sbjct: 163 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 222

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            N ++D  C  G +  A  ++  M    V P+ VTYN LM G C + +V+ A ++ D M 
Sbjct: 223 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 282

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +    + IS       YN LI G CK Q  D A  L  EM  + +TP+  TY +LI G+
Sbjct: 283 HKDCVANVIS-------YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 335

Query: 308 ASVDKAAES 316
             V +  ++
Sbjct: 336 CHVGRLQDA 344



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 141/257 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + P+   + + V  +CKEG +  A  +++ M + G+ P  VTY  L+DG+C +  
Sbjct: 699 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 758

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D MV +G +P   +YN+LI+     ++M +A  +L++M  +G++ D++TYN 
Sbjct: 759 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 818

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A +L  EM+  G  P ++TY  L+  L K + + EA  L +      
Sbjct: 819 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 878

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI+++N  IDG C  G +E A  L   +    + PD  TYN ++HG C++G ++EA 
Sbjct: 879 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 938

Query: 241 RLLDQMKRRGIKPDHIS 257
           +L  +M    I  +  S
Sbjct: 939 KLFRKMDENDIWSNSTS 955



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 154/307 (50%), Gaps = 10/307 (3%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S ++ +F S       L+EA     +M      P+ V +N L+       +     S   
Sbjct: 10  SSSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSR 69

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           +M   GI P   T  ++I+ L    ++  A   L ++ + G  PD+ T+  LI G C  G
Sbjct: 70  QMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 129

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
              +A  L D+MI +G QP ++TY +LI  L K  ++ EA  +F   + KG+ P+IV +N
Sbjct: 130 KIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYN 189

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           +LI G C     +   +L+ EM   K+ PD  T NT++   C++G V EA  ++D M  R
Sbjct: 190 SLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR 249

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG--- 306
           G++P+ +       TYNAL+ G C   E D+A ++   MV K    +  +Y +LI G   
Sbjct: 250 GVEPNVV-------TYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 302

Query: 307 IASVDKA 313
           I SVDKA
Sbjct: 303 IQSVDKA 309



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 148/309 (47%), Gaps = 20/309 (6%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K         +  QM   G+ P   T N LI+ +C+   L  AFS 
Sbjct: 579 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 638

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P   TY  L++ L              +M  KGI PD  TYN LI+  C 
Sbjct: 639 LAKLLKLGFQPDVVTYGTLMNGLC-------------KMITKGISPDIFTYNSLIHALCN 685

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
               K   +L +EM++  I P ++ +++++  L K+  +  A  + +  + +G+ PD+V 
Sbjct: 686 LCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVT 745

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + AL+DGHC    ++ A  +   M      P+  +YN L++G C+  ++++A  LL+QM 
Sbjct: 746 YTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMS 805

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G+  D +       TYN LI GLC       A  L  EMV+ G  PD  TY  L++ +
Sbjct: 806 LQGLIADTV-------TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858

Query: 308 ASVDKAAES 316
                 AE+
Sbjct: 859 CKNHHLAEA 867



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 129/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+P+  TY + + G C    ++ A ++ + M     V   ++YNTLI+GYC   +
Sbjct: 246 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQS 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM +Q + P   TYN LIH L    ++ +A  +  EM  +G +PD +TY  
Sbjct: 306 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +  C+  +  KA +L   +      P +  YT+++  + +   + +A  LF N  +KG
Sbjct: 366 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +N +I G C  G +  A  L  EM++    P++ TYN +  G  R  +     
Sbjct: 426 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 485

Query: 241 RLLDQMKRRGIKPD 254
            LL++M  RG   D
Sbjct: 486 ELLEEMLARGFSVD 499



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 20/287 (6%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           L++A     +M      P+ V +  L+       +     S   +M   GI P   T N+
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 621

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+     R++  A  +L ++ + G  PD +TY  L+NG C+             MI KG
Sbjct: 622 LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK-------------MITKG 668

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P + TY SLI  L           L    +   ++P++V+F+ ++D  C  G I  A 
Sbjct: 669 ISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAH 728

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            ++  M +  V PD VTY  LM G C + +++EA ++ D M  +G  P+  S       Y
Sbjct: 729 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRS-------Y 781

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           N LI G C+ Q  D A  LL +M  +G+  D  TY +LI G+  V +
Sbjct: 782 NILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGR 828



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 140/384 (36%), Gaps = 87/384 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P++ TY + + G+C  GRL++A  +  +M   G +P  VTY TL D  C   +
Sbjct: 316 MSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRH 375

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +    +      P    Y  ++  +    ++ +A D+   +  KG+ P+  TYNI
Sbjct: 376 LDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNI 435

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G   +A  L  EM   G  P   TY  +     + N  +   +L E  LA+G
Sbjct: 436 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG 495

Query: 181 MLPDIVMFNALIDGHCTNG----------------------------------------- 199
              D+     L+     +G                                         
Sbjct: 496 FSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSR 555

Query: 200 -----NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
                 ++ A S    M  M   P  V +  L+    +         L  QM   GI PD
Sbjct: 556 SPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPD 615

Query: 255 ----------------------------HISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
                                        + F P  +TY  L+ GLCK            
Sbjct: 616 VYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK------------ 663

Query: 287 EMVSKGITPDDNTYFSLIEGIASV 310
            M++KGI+PD  TY SLI  + ++
Sbjct: 664 -MITKGISPDIFTYNSLIHALCNL 686



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
           N + EA   F   L K   P  V FN L+       +     SL ++MD   + PD  T 
Sbjct: 24  NTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
             +++  C   +V+ A   L ++ + G +PD         T+  LI+GLC   +   A  
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPD-------ATTFTTLIRGLCVEGKIGEALH 136

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           L  +M+ +G  P+  TY +LI G+    +  E+ N
Sbjct: 137 LFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFN 171


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++GV+P+  TY S +S +C   R  +ASR+L  M E  + P  VT+N LID +  +G 
Sbjct: 286 MENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGK 345

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+K+ I P   TY+ LI+   M  ++ EA  M + M  K   P+ +TYN 
Sbjct: 346 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 405

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +   L  EM  +G+    +TYT+LI    +      A  +F+  ++ G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N L+DG C NG +E+A  + + + R K+ P   TYN ++ G C+ GKVE+  
Sbjct: 466 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 525

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L   +  +G+KPD I        YN +I G C+    + A+ L R+M   G  PD  T
Sbjct: 526 DLFCSLSLKGVKPDVI-------IYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 170/336 (50%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QP+  TYG  V+G+CK G ++ A  +L +M+   +    V Y+T+ID  C   +
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRH 275

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   EM  +G+ P   TY+ LI  L    +  +A  +L +M E+ I P+ +T+N 
Sbjct: 276 EDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNA 335

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEMI + I P + TY+SLI      +R+ EA  +FE  ++K 
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N LI+G C    I+    L +EM +  +  + VTY TL+HG  +    + A+
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 455

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +  QM   G+ P+ +++N                            PT  TYN +I+G+
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + +   +L   +  KG+ PD   Y ++I G  
Sbjct: 516 CKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFC 551



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 172/342 (50%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  + YTY   ++  C+  ++  A  +L +M + G  P+ VT ++L++GYC+   
Sbjct: 111 MQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 170

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+  LIH L +  K  EA  ++  M ++G  P+ +TY +
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230

Query: 121 LINGYCRCGNAKKAFSLHD-----------------------------------EMIHKG 145
           ++NG C+ G+   AF+L +                                   EM +KG
Sbjct: 231 VVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 290

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P ++TY+SLI  L    R  +A +L  + + + + P++V FNALID     G +  A 
Sbjct: 291 VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAE 350

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  EM +  + PD  TY++L++G C   +++EA+ + + M  +   P+ +       TY
Sbjct: 351 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV-------TY 403

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           N LI G CK +  D   EL REM  +G+  +  TY +LI G 
Sbjct: 404 NTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 172/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ T+ + + G+    +  EA  ++++M + G  P  VTY  +++G C +G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++AF+  ++M    I      Y+ +I  L   R   +A ++  EM  KG+ P+ ITY+ 
Sbjct: 241 IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C       A  L  +MI + I P ++T+ +LI    K+ +++EA++L++  + + 
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +++LI+G C +  ++ A  + + M      P+ VTYNTL++G C+  +++E  
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RG+  + +       TY  LI G  + ++ D A+ + ++MVS G+ P+  TY
Sbjct: 421 ELFREMSQRGLVGNTV-------TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTY 473

Query: 301 FSLIEGIA 308
            +L++G+ 
Sbjct: 474 NTLLDGLC 481



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 162/324 (50%), Gaps = 32/324 (9%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +L++A  +   M ++  +P+   +N L+         ++  S  ++M + GI     TYN
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +LI+      ++  A  +L +M + G  P  +T + L+NGYC       A +L D+M+  
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P  +T+T+LI  L   N+  EA  L +  + +G  P++V +  +++G C  G+I+ A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
           F+LL +M+  K+  + V Y+T++   C+    ++A  L  +M+ +G++P+ I++      
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGIT 294
                                 NP  +T+NALI    K  EG L  AE+L  EM+ + I 
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK--EGKLVEAEKLYDEMIKRSID 362

Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
           PD  TY SLI G    D+  E+ +
Sbjct: 363 PDIFTYSSLINGFCMHDRLDEAKH 386


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 177/305 (58%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV+P++  Y S V+ +C +G + +A R++E M +  ++     Y T++ G+CNKG+
Sbjct: 317 MVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGD 376

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A  + DEM ++G+     TY  +I+ L    ++ EA+ +L+EM  + +  D +TY +
Sbjct: 377 LVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTV 436

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G   +AF +H+ M+ +G+ P ++TYT+L   L KQ  +  A++L      KG
Sbjct: 437 LIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKG 496

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   +N+LI+G C  G +E+A   + +MD   + PD  TY TL+   C+ G ++ A 
Sbjct: 497 LELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAH 556

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  +GIK       PT +TYN L+ G C +   +  ++LL  M+ K I P+  TY
Sbjct: 557 SLLQEMLDKGIK-------PTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATY 609

Query: 301 FSLIE 305
            SL++
Sbjct: 610 NSLMK 614



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+  D  TY + ++G+C+   LEEA ++L++M    L    VTY  LIDGYC +G 
Sbjct: 387 MQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGK 446

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   + MV++G+ P   TY  L   L  +  +  A+++L EM  KG+  ++ TYN 
Sbjct: 447 MAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 506

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G  ++A     +M    ++P + TYT+LI  L K   +  A  L +  L KG
Sbjct: 507 LINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKG 566

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV +N L++G C +G +E    LL  M    +HP+  TYN+LM   C +  ++   
Sbjct: 567 IKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTT 626

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M+ R + P+         TYN LI+G CK +    A     EM+ KG      +Y
Sbjct: 627 EIYKGMRSRDVGPNEN-------TYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSY 679

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +    K  E+
Sbjct: 680 SALIRLLNKKKKFVEA 695



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 158/300 (52%), Gaps = 7/300 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TYG  + G C  G LE A ++L++M   G+ P A  Y +++   C+KG +  A   
Sbjct: 289 PDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRV 348

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            ++MV++ ++   + Y  ++     +  +V A     EM  KG+  D +TY  +ING CR
Sbjct: 349 VEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCR 408

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
               ++A  L  EM  + +    +TYT LI    K+ +M EA Q+    + +G+ P++V 
Sbjct: 409 AVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVT 468

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + AL DG C  G+++ A  LL EM    +  +  TYN+L++G C+ G +E+A R +  M 
Sbjct: 469 YTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMD 528

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              +KPD         TY  LI  LCK+ + D A  LL+EM+ KGI P   TY  L+ G 
Sbjct: 529 TACLKPD-------VYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 581



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 126/211 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  ++PD YTY + +  +CK G L+ A  +L++M + G+ PT VTYN L++G+C  G 
Sbjct: 527 MDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR 586

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      D M+++ I P A+TYN L+ +  +E  M    ++ K M  + + P+  TYNI
Sbjct: 587 VEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNI 646

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A   HDEMI KG + T  +Y++LI +L+K+ + +EA +LF +   +G
Sbjct: 647 LIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEG 706

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           +  +  +++  ID +    N+E   +L  E+
Sbjct: 707 LTAESDVYDFYIDLNFNEDNLESTLALCDEL 737



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 128/251 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV P+  TY +   G+CK+G ++ A+ +L +M   GL   A TYN+LI+G C  G 
Sbjct: 457 MVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGY 516

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     +M    + P   TY  LI  L     +  A  +L+EM +KGI P  +TYN+
Sbjct: 517 LEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNV 576

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L D M+ K I P   TY SL+     +N M    ++++   ++ 
Sbjct: 577 LMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRD 636

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +N LI GHC   N++ A     EM +        +Y+ L+    ++ K  EAR
Sbjct: 637 VGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEAR 696

Query: 241 RLLDQMKRRGI 251
            L   M++ G+
Sbjct: 697 ELFHDMRKEGL 707



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 79/146 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P++ TY S +   C E  ++  + + + M+   + P   TYN LI G+C   N
Sbjct: 597 MLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARN 656

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F DEM+++G   TA++Y+ LI  L  ++K VEA ++  +M ++G+  +S  Y+ 
Sbjct: 657 MKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDF 716

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI 146
            I+      N +   +L DE++   I
Sbjct: 717 YIDLNFNEDNLESTLALCDELVEASI 742



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +L+ + + GI P     N +++         +A  L  E+ HK +     +Y  L+  L 
Sbjct: 219 LLRRLRQYGISPSPEACNAVLSRL----PLDEAIELFQELPHKNV----CSYNILLKALC 270

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
              R+ +A QLF+   +    PD+V +  LI GHC  G +E A  LL EM    V P+  
Sbjct: 271 DAGRVKDARQLFDEMASA---PDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNAT 327

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL- 280
            Y +++   C +G + +A R+++ M +R +  D          Y  ++ G C   +GDL 
Sbjct: 328 VYTSVVALLCDKGWISDALRVVEDMVQRKVILDEA-------LYTTVLSGFC--NKGDLV 378

Query: 281 -AEELLREMVSKGITPDDNTYFSLIEGI 307
            A     EM  KG+  D  TY ++I G+
Sbjct: 379 SARRWFDEMQRKGLATDGVTYTTMINGL 406



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 49/112 (43%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+SR V P+  TY   + G CK   ++EA    ++M + G   TA +Y+ LI     K  
Sbjct: 632 MRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKK 691

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
              A     +M K+G+   +  Y+  I     E  +     +  E+ E  IV
Sbjct: 692 FVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVEASIV 743


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 179/318 (56%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG +PDS T+ + +  + K GR+++A  +L++MKE G+ P  VTYN LI G+   G+
Sbjct: 210 MKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGD 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A++  DEM + G  P   TY+ LI  L+   ++ EA  +LK+M ++G  PD+ITYN 
Sbjct: 270 LVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNT 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING  + G    A  L D M  KG  P ++TY++LI  L K  R+  A  LFE   + G
Sbjct: 330 LINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  + ++I      G ++ A  L  EM    + PD +TYN  ++   R G+ +EAR
Sbjct: 390 IQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEAR 449

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ + MK  G+ PD         TY+AL+ GL K +E D A  LL+E++ +G   D   +
Sbjct: 450 KIFEDMKESGLLPDVA-------TYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKF 502

Query: 301 FSLIEGIAS---VDKAAE 315
              +E + S   VD+A E
Sbjct: 503 DECLEILTSWGNVDEAHE 520



 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 164/308 (53%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+    PD  +Y   ++ + + G+ E A  ++ +M+  G  P   TYNTL+D     G 
Sbjct: 35  LKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQ 94

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM   G +P   TYN LI  L    ++ EA  +  EM E+G VPD+ TYN 
Sbjct: 95  FDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNS 154

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G  + G ++KA  L +EM   G  P ++TY+SLI  L K    ++A +LF+    +G
Sbjct: 155 LIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRG 214

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + F AL+D     G ++ A  LL EM    V P  VTYN L+ G  + G + EA 
Sbjct: 215 RKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY 274

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD+MKR G KPD +       TY+ LI GL K  + D A ++L++M  +G  PD  TY
Sbjct: 275 NLLDEMKRNGCKPDVV-------TYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITY 327

Query: 301 FSLIEGIA 308
            +LI G+ 
Sbjct: 328 NTLINGLG 335



 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G +P+ +TY + V  + K G+ +EA R+L +M++NG VP   TYN LI      G 
Sbjct: 70  MQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGR 129

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF+   EM ++G +P   TYN LI+ L    +  +A ++L+EM   G  PD +TY+ 
Sbjct: 130 LSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSS 189

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G  + G   KAF L  EM  +G +P  +T+T+L+  L K  R+ +A +L +    +G
Sbjct: 190 LITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERG 249

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +NALI G    G++  A++LL EM R    PD VTY+ L+ G  +  +++EA 
Sbjct: 250 VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEAC 309

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++L +M++ G  PD I       TYN LI GL K    + A  L   M SKG  PD  TY
Sbjct: 310 QVLKKMEKEGCPPDTI-------TYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTY 362

Query: 301 FSLIEGIA 308
            +LI  + 
Sbjct: 363 STLITALG 370



 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 160/311 (51%), Gaps = 11/311 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  TY S ++ + K G+ EEA  + E++K     P  V+Y+ LI+     G  E A   
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM  +G  P   TYN L+  L    +  EA  +L EM + G VPD  TYN LI+   +
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +AF+L  EM  +G  P   TY SLI+ L K  R  +A +L E     G  PD++ 
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT 186

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +++LI G   +G   +AF L +EM R    PD +T+  LM    + G+V++A  LLD+MK
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK 246

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE--LLREMVSKGITPDDNTYFSLIE 305
            RG+KP  +       TYNALI G  K   GDL E   LL EM   G  PD  TY  LI 
Sbjct: 247 ERGVKPGVV-------TYNALIAGFGK--VGDLVEAYNLLDEMKRNGCKPDVVTYSCLIT 297

Query: 306 GIASVDKAAES 316
           G+    +  E+
Sbjct: 298 GLIKASQLDEA 308



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 171/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  PD++TY S + G+ K GR ++A  +LE+M+ +G  P  +TY++LI G    G 
Sbjct: 140 MRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGE 199

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF    EM ++G  P + T+  L+  L    ++ +A ++L EM E+G+ P  +TYN 
Sbjct: 200 TVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNA 259

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+ + G+  +A++L DEM   G +P ++TY+ LI  L K +++ EA Q+ +    +G
Sbjct: 260 LIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEG 319

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +N LI+G    G +  A  L   M     +PD VTY+TL+    +  +VE A 
Sbjct: 320 CPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESAC 379

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M+  GI+PD         TY ++I  L K  + D A+ L  EM  KG++PD  TY
Sbjct: 380 VLFEEMESVGIQPDL-------FTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITY 432

Query: 301 FSLIEGIA 308
            + +  + 
Sbjct: 433 NAFLNSLG 440



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 158/304 (51%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD+ TY + ++G+ K G L +A R+ ++MK  G  P  VTY+TLI        
Sbjct: 315 MEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAAR 374

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM   GI P   TY  +I  L    ++ +AD +  EM  KG+ PD ITYN 
Sbjct: 375 VESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNA 434

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +N   R G  K+A  + ++M   G+ P + TY +L+  LSK   + +A  L +  + +G
Sbjct: 435 FLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQG 494

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + F+  ++   + GN++ A  LL+  +   + P   +YN L+    + G+V EA 
Sbjct: 495 CAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAF 554

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L+ +K +G KPD +S       Y++LI  L +  + D A ELL EM  +G+     +Y
Sbjct: 555 NTLEDLKEQGGKPDIVS-------YSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSY 607

Query: 301 FSLI 304
            +L+
Sbjct: 608 SNLV 611



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 139/276 (50%), Gaps = 7/276 (2%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P  VTYN+L++     G  E A    +E+      P   +Y+ LI+ L    K   A ++
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           + EM  KG  P+  TYN L++   + G   +A  L  EM   G  P + TY  LI  L K
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
             R+ EA  LF     +G +PD   +N+LI G    G  ++A  LL+EM+R    PD +T
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT 186

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y++L+ G  + G+  +A +L  +MKRRG KPD I       T+ AL+  L K    D A 
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSI-------TFTALMDALGKAGRVDDAL 239

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           ELL EM  +G+ P   TY +LI G   V    E+ N
Sbjct: 240 ELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYN 275



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+G+ P + +Y + +  + K GR+ EA   LE +KE G  P  V+Y++LI      G ++
Sbjct: 527 SKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQID 586

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHEL 90
            AF   +EM K+G+  +  +Y+ L+ +L
Sbjct: 587 TAFELLEEMSKRGLKLSPRSYSNLVRKL 614


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/314 (36%), Positives = 174/314 (55%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+  + +TY  ++ G+C+ GRL EA R+++ M+    VP  VTYNTLI G C K   + 
Sbjct: 218 RGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQE 276

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +   M+ QG +P   TYN +I        + EA ++LK+   KG VPD +TY  LIN
Sbjct: 277 AMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLIN 336

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G+ ++A  L +E   KGI+P ++ Y SL+  L  Q  ++ A Q+      +G  P
Sbjct: 337 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHP 396

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I+G C  GNI  A  ++ +       PD  T+NTL+ G C++ K++ A +L+
Sbjct: 397 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 456

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   GI PD I       TYN+++ GLCK  + +   E  +EM+ KG  P+  TY  L
Sbjct: 457 ERMWEYGIAPDTI-------TYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNIL 509

Query: 304 IEGIASVDKAAESS 317
           IE     +K  E+S
Sbjct: 510 IENFCRSNKMEEAS 523



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 177/344 (51%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +TY + + G CK   ++EA+ +L+     G VP  VTY +LI+G C +G+
Sbjct: 284 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +E   +GI P    YN L+  L ++  ++ A  ++ EM E+G  PD  TYNI
Sbjct: 344 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNI 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ GN   A  + ++ I KG  P + T+ +LI    K+ ++  A QL E     G
Sbjct: 404 VINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N++++G C  G +       +EM     HP+ +TYN L+   CR  K+EEA 
Sbjct: 464 IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEAS 523

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +++ +M + G+ PD +SFN                             T  T+N LI   
Sbjct: 524 KVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAF 583

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
                  +AE++  EM+SKG   D  TY  LI+G    A+VD+A
Sbjct: 584 SGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRA 627



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 164/306 (53%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++  V PD  TY + + G+CK+   +EA   L +M   G +P   TYNT+IDGYC    
Sbjct: 250 MRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     + V +G +P   TY  LI+ L  E  +  A ++  E   KGI PD + YN 
Sbjct: 309 VQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  + +EM  +G  P + TY  +I  L K   + +A  +  + + KG
Sbjct: 369 LVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKG 428

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+  FN LIDG+C    ++ A  L++ M    + PD +TYN++++G C+ GKV E  
Sbjct: 429 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 488

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M  +G  P     NP  +TYN LI+  C++ + + A +++ +M  +G+ PD  ++
Sbjct: 489 ETFQEMILKGCHP-----NP--ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSF 541

Query: 301 FSLIEG 306
            +LI G
Sbjct: 542 NTLIYG 547



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 158/306 (51%), Gaps = 7/306 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +++G++PD   Y S V G+C +G +  A +++ +M E G  P   TYN +I+G C  GN+
Sbjct: 355 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 414

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    ++ + +G +P   T+N LI       K+  A  +++ M E GI PD+ITYN +
Sbjct: 415 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSV 474

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +NG C+ G   +      EMI KG  P  +TY  LI    + N+M EA ++      +G+
Sbjct: 475 LNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 534

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD V FN LI G C NG++E A+ L ++++         T+NTL+     +  +  A +
Sbjct: 535 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 594

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           + D+M  +G + D         TY  LI G CK    D A   L EM+ KG  P  +T+ 
Sbjct: 595 IFDEMLSKGHRAD-------SYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFG 647

Query: 302 SLIEGI 307
            +I  +
Sbjct: 648 RVINSL 653



 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 161/317 (50%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV PD +T+   +   C   R   A R+L  +   G    AV Y T++ G    G+
Sbjct: 114 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGH 169

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M+   + P  + +N ++H L     ++EA  +L ++ ++G+  +  TYNI
Sbjct: 170 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 229

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G C  G   +A  L D M    + P ++TY +LI  L K++   EA       + +G
Sbjct: 230 WIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 288

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD   +N +IDG+C    ++ A  LLK+       PD+VTY +L++G C +G VE A 
Sbjct: 289 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERAL 348

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++ + +GIKPD +        YN+L++GLC       A +++ EM  +G  PD  TY
Sbjct: 349 ELFNEAQAKGIKPDIV-------VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 401

Query: 301 FSLIEGIASVDKAAESS 317
             +I G+  +   ++++
Sbjct: 402 NIVINGLCKMGNISDAT 418



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  PD +T+ + + G CK  +L+ A +++E+M E G+ P  +TYN++++G C  G +  
Sbjct: 427 KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNE 486

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 EM+ +G  P   TYN+LI       KM EA  ++ +M ++G+ PD++++N LI 
Sbjct: 487 VNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIY 546

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+CR G+ + A+ L  ++  KG   T  T+ +LI   S +  M  A+++F+  L+KG   
Sbjct: 547 GFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRA 606

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +  LIDG C   N++RA+  L EM +    P   T+  +++      +V +A  ++
Sbjct: 607 DSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGII 666

Query: 244 DQMKRRGIKPD 254
             M + G+ P+
Sbjct: 667 HIMVKIGVVPE 677



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY   ++G+CK G + +A+ ++      G +P   T+NTLIDGYC +  
Sbjct: 389 MAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLK 448

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M + GI P   TYN +++ L    K+ E ++  +EM  KG  P+ ITYNI
Sbjct: 449 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNI 508

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR    ++A  +  +M  +G+ P  +++ +LI+   +   +  A  LF+    KG
Sbjct: 509 LIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG 568

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                  FN LI       N+  A  +  EM       D  TY  L+ G C+   V+ A 
Sbjct: 569 YSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAY 628

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M ++G       F P+  T+  +I  L  N     A  ++  MV  G+ P+    
Sbjct: 629 MHLVEMIKKG-------FIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE---- 677

Query: 301 FSLIEGIASVDK 312
             +++ I + DK
Sbjct: 678 --VVDTILNADK 687



 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 15/309 (4%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y + +    + GRL +A    E+M      P A  YN ++D   +    + A      M+
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 115

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
             G+ P   T+ + +    +  +   A  +L+ +  +G    ++ Y  ++ G    G+  
Sbjct: 116 AAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTH 171

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A  L D+M+H  + P +  +  ++  L K+  ++EA  L    + +GM  ++  +N  I
Sbjct: 172 DARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWI 231

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
            G C  G +  A  L+  M    V PD VTYNTL+ G C++   +EA   L +M  +G  
Sbjct: 232 RGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCL 290

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS--- 309
           PD         TYN +I G CK      A ELL++ V KG  PD  TY SLI G+ +   
Sbjct: 291 PD-------DFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGD 343

Query: 310 VDKAAESSN 318
           V++A E  N
Sbjct: 344 VERALELFN 352


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 166/305 (54%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD +TY + + G+CK+G L  A  ++ +M+  G  P  +TY  LID +C +G 
Sbjct: 398 MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 457

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +  DEM  +G+   A  YN LI  L  + K+ +A +M  +M  KG  PD  T+N 
Sbjct: 458 LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 517

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+    ++A  L+ +M+ +G+    +TY +LI    ++  M EA +L  + L +G
Sbjct: 518 LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 577

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  GNIE+  +L ++M    ++P+ ++ N L++G CR G ++ A 
Sbjct: 578 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHAL 637

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L  M  RG+ PD +       TYN+LI GLCK      A  L  ++  +GI PD  TY
Sbjct: 638 EFLRDMIHRGLTPDIV-------TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 690

Query: 301 FSLIE 305
            +LI 
Sbjct: 691 NTLIS 695



 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 184/347 (53%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+S+TYG  + G+C+ G+++EA  +L ++      P  V +NTLI+GY ++G 
Sbjct: 331 MLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGR 386

Query: 61  LEMAFSFRDE-MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A +   E M+  G  P   TYN LI  L  +  +V A +++ EM  KG  P+ ITY 
Sbjct: 387 LDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYT 446

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ILI+ +C+ G  ++A ++ DEM  KG+    + Y  LI  L K  ++ +A  +F +  +K
Sbjct: 447 ILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSK 506

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  FN+LI G C     E A  L ++M    V  + +TYNTL+H   R+G ++EA
Sbjct: 507 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 566

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
            +L++ M  RG   D I++N                            P  ++ N LI G
Sbjct: 567 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 626

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LC+      A E LR+M+ +G+TPD  TY SLI G+    +A E+ N
Sbjct: 627 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALN 673



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 166/317 (52%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ P  YT+G  +  +C    ++ A  +L+ M  +G VP A+ Y TLI      G 
Sbjct: 226 MLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGR 285

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       +EM+  G +P  +T+N  IH L    ++ EA  ++  M  +G  P+S TY +
Sbjct: 286 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 345

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF-ENFLAK 179
           L++G CR G   +A  L    ++K   P ++ + +LI     + R+ EA  +  E+ L+ 
Sbjct: 346 LMHGLCRMGKVDEARML----LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSV 401

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  +N LI G C  G +  A  L+ EM      P+ +TY  L+   C++G++EEA
Sbjct: 402 GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 461

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R +LD+M  +G+  + +        YN LI  LCK+++   A  +  +M SKG  PD  T
Sbjct: 462 RNVLDEMSGKGLALNAVG-------YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFT 514

Query: 300 YFSLIEGIASVDKAAES 316
           + SLI G+  V+K  E+
Sbjct: 515 FNSLIFGLCKVNKFEEA 531



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 144/279 (51%), Gaps = 9/279 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  ++  Y   +S +CK+ ++++A  M   M   G  P   T+N+LI G C    
Sbjct: 468 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 527

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     +M+ +G++    TYN LIH  L    M EA  ++ +M  +G   D ITYN 
Sbjct: 528 FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 587

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   CR GN +K  +L ++M+ KG+ P  ++   LI  L +   +  A +   + + +G
Sbjct: 588 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 647

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N+LI+G C  G  + A +L  ++    + PD +TYNTL+   C++G  ++A 
Sbjct: 648 LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAH 707

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            LL     RG+      F P  +T+  L+    K  EGD
Sbjct: 708 LLLS----RGVDS---GFIPNEVTWYILVSNFIK--EGD 737



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 129/237 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G +PD +T+ S + G+CK  + EEA  + + M   G++   +TYNTLI  +  +G 
Sbjct: 503 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 562

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G      TYN LI  L     + +   + ++M  KG+ P++I+ NI
Sbjct: 563 MQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNI 622

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING CR GN + A     +MIH+G+ P ++TY SLI  L K  R  EA  LF+    +G
Sbjct: 623 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 682

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           + PD + +N LI  HC  G  + A  LL         P+EVT+  L+    ++G  E
Sbjct: 683 ICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 142/339 (41%), Gaps = 38/339 (11%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y   +  +   G  +    +L QMK+ G+V     +  ++  Y   G    A     +M
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 190

Query: 72  VKQGIM---PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             +G+    PT  +YN+++  LL         ++  EM  KGI P   T+ +++   C  
Sbjct: 191 --RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLV 248

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
                A +L  +M   G  P  + Y +LI  LSK  R+ E  +L E  L  G +PD+  F
Sbjct: 249 NEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTF 308

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N  I G C    I  A  L+  M      P+  TY  LMHG CR GKV+EAR LL+++  
Sbjct: 309 NDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP- 367

Query: 249 RGIKPDHISFN-----------------------------PTRLTYNALIQGLCKNQEGD 279
               P+ + FN                             P   TYN LI GLCK     
Sbjct: 368 ---NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLV 424

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            A EL+ EM  KG  P+  TY  LI+      +  E+ N
Sbjct: 425 SARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN 463



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 12/253 (4%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F+    ++G       Y +LI +L    +    D +L +M ++GIV     + +++  Y 
Sbjct: 116 FQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYG 175

Query: 127 RCGNAKKAFSLHDEMIHKGI---QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           R G   +A  L  +M  +G+   +PT  +Y  ++ VL   N       +F   L+KG+ P
Sbjct: 176 RAGLPGQATRLLLDM--RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISP 233

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +  F  ++   C    ++ A +LLK+M R    P+ + Y TL+H   + G+V E  +LL
Sbjct: 234 TVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLL 293

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   G  PD  +FN         I GLCK      A +L+  M+ +G TP+  TY  L
Sbjct: 294 EEMLLMGCIPDVNTFNDA-------IHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVL 346

Query: 304 IEGIASVDKAAES 316
           + G+  + K  E+
Sbjct: 347 MHGLCRMGKVDEA 359


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 172/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P  YT    ++ +C+  +   AS  L +M + G  P  VT+ +L+ G+C+   
Sbjct: 108 MQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNR 167

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A +  D++V  G  P   TY  LIH L   R +  A ++  +MG+ GI P+ +TYN 
Sbjct: 168 IEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNS 227

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G    A  L  +M+ +GIQP ++T+T+LI    K  +++EA +L++  +   
Sbjct: 228 LVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMS 287

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  + ALI+G CT G ++ A  +   M+    +P+EVTY TL+HG C+  +VE+  
Sbjct: 288 VYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGT 347

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M ++G+  + I       TY  LIQG C     D+A+E+  +M S+   PD  TY
Sbjct: 348 KIFYEMSQKGLVANTI-------TYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTY 400

Query: 301 FSLIEGIA 308
             L++G+ 
Sbjct: 401 NVLLDGLC 408



 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 154/304 (50%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+  TY + +  +CK   L  A  +  QM +NG+ P  VTYN+L+ G C  G    A
Sbjct: 182 GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDA 241

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M+K+GI P   T+  LI   +   K++EA ++ K M +  + PD  TY  LING
Sbjct: 242 AWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALING 301

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G   +A  +   M   G  P  +TYT+LI    K  R+ +  ++F     KG++ +
Sbjct: 302 LCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVAN 361

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LI G+C  G  + A  +  +M   +  PD  TYN L+ G C  G VE+A  +  
Sbjct: 362 TITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFK 421

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M++R +  + +       TY  +IQG+CK  + + A +L   + SKG+ P+  TY ++I
Sbjct: 422 YMRKREMDINIV-------TYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMI 474

Query: 305 EGIA 308
            G  
Sbjct: 475 SGFC 478



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 151/299 (50%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+  TY S VSG+C+ GR  +A+ +L  M + G+ P  +T+  LID +   G 
Sbjct: 213 MGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGK 272

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M++  + P   TY  LI+ L    ++ EA  M   M   G  P+ +TY  
Sbjct: 273 IMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTT 332

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+    +    +  EM  KG+    +TYT LI       R   A ++F    ++ 
Sbjct: 333 LIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRR 392

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI  +N L+DG C NG +E+A  + K M + ++  + VTY  ++ G C+ GKVE+A 
Sbjct: 393 APPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAF 452

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L   +  +G+KP+ I       TY  +I G C+      A+ L ++M   G  P+++ 
Sbjct: 453 DLFCSLFSKGMKPNVI-------TYTTMISGFCRRGFIHEADALFKKMKEDGFLPNESV 504



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 10/314 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K  R +    + EQM+  G+ P   T N +++  C       A  F
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T+  L+H      ++ +A  +  ++   G  P+ +TY  LI+  C+
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCK 199

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
             +   A  + ++M   GI+P ++TY SL+  L +  R  +A  L  + + +G+ P+++ 
Sbjct: 200 NRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVIT 259

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F ALID     G I  A  L K M +M V+PD  TY  L++G C  G+++EAR++   M+
Sbjct: 260 FTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLME 319

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G  P+ +       TY  LI G CK++  +   ++  EM  KG+  +  TY  LI+G 
Sbjct: 320 SNGYYPNEV-------TYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGY 372

Query: 308 ASV---DKAAESSN 318
             V   D A E  N
Sbjct: 373 CLVGRPDVAQEVFN 386



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 143/293 (48%), Gaps = 7/293 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +  EA  +  +M  +  +P+ V +  L+         ++  S  ++M   GI P   T N
Sbjct: 62  QFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCN 121

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           ++++ +    +   A   L +M + G  PD +T+  L++G+C     + A +L D+++  
Sbjct: 122 IVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGM 181

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P ++TYT+LI  L K   +  A ++F      G+ P++V +N+L+ G C  G    A
Sbjct: 182 GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDA 241

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             LL++M +  + P+ +T+  L+    + GK+ EA+ L   M +  + PD         T
Sbjct: 242 AWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPD-------VFT 294

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           Y ALI GLC     D A ++   M S G  P++ TY +LI G     +  + +
Sbjct: 295 YTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGT 347



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 7/236 (2%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S Y  ++   L   +  EA D+   M     +P  + +  L++   +        SL ++
Sbjct: 48  SNYRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQ 107

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M   GI P + T   ++  + + ++   A       +  G  PD+V F +L+ G C    
Sbjct: 108 MQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNR 167

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           IE A +L  ++  M   P+ VTY TL+H  C+   +  A  + +QM   GI+P+ +    
Sbjct: 168 IEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVV---- 223

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              TYN+L+ GLC+      A  LLR+M+ +GI P+  T+ +LI+    V K  E+
Sbjct: 224 ---TYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEA 276


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 175/308 (56%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD+ T+ + ++G C EG ++EA  +  +M   G  P  ++Y+T+I+G C  GN
Sbjct: 153 MFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGN 212

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             MA     +M ++G  P    Y  +I  L  +  + +A D+L EM ++GI PD +TY+ 
Sbjct: 213 TSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYST 272

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+C  G+  +A  L +EM+ + + P  +T+T L+  L K+  + EA  +FE    KG
Sbjct: 273 ILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKG 332

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +NAL+DG+C N  ++ A  +L  M      P   +YN L++G C++ +++EA+
Sbjct: 333 AEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAK 392

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  + + PD +       TY+ L+QGLC+      A  L +EM S G+ PD  TY
Sbjct: 393 SLLVEMSEKELTPDTV-------TYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTY 445

Query: 301 FSLIEGIA 308
            +L++G+ 
Sbjct: 446 STLLDGLC 453



 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 167/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY + + G C  G L EA+ +  +M    ++P  VT+  L+DG C +G 
Sbjct: 258 MVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGM 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M K+G  P A TYN L+    +  +M EA  +L  M +KG  P   +YNI
Sbjct: 318 VSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNI 377

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A SL  EM  K + P  +TY++L+  L +  R  EA  LF+   + G
Sbjct: 378 LINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSG 437

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ ++ L+DG C +G+++ A  LLK M   K+ PD V YN L+ G    GK+E A+
Sbjct: 438 LLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAK 497

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++   GI+       PT  TY  +I+GL K    D A EL R+M   G  P+  +Y
Sbjct: 498 ELFSKLFADGIQ-------PTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSY 550

Query: 301 FSLIEGI 307
             +I+G 
Sbjct: 551 NVIIQGF 557



 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 171/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +P+   Y + +  +CK+  + +A  +L +M + G+ P  VTY+T++ G+C+ G+
Sbjct: 223 MEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGH 282

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EMV + +MP   T+ +L+  L  E  + EA  + + M +KG  P++ TYN 
Sbjct: 283 LNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNA 342

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC      +A  + D M+ KG  P + +Y  LI    K+ R+ EA  L      K 
Sbjct: 343 LMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKE 402

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V ++ L+ G C  G  + A +L KEM    + PD +TY+TL+ G C+ G ++EA 
Sbjct: 403 LTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEAL 462

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M+   I+PD +        YN LI+G+    + ++A+EL  ++ + GI P   TY
Sbjct: 463 KLLKSMQESKIEPDIV-------LYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTY 515

Query: 301 FSLIEGI 307
             +I+G+
Sbjct: 516 TIMIKGL 522



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 168/314 (53%), Gaps = 7/314 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  + Y+    ++ +C+   +  A  +L +M + G+ P A+T+NTLI+G C +G ++ A
Sbjct: 122 GVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEA 181

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EMV++G  P   +Y+ +I+ L        A  +L++M EKG  P+ + Y  +I+ 
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  L  EM+ +GI P ++TY++++        + EA  LF   + + ++P+
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V F  L+DG C  G +  A  + + M +    P+  TYN LM G C   +++EA+++LD
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLD 361

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +G         P   +YN LI G CK +  D A+ LL EM  K +TPD  TY +L+
Sbjct: 362 IMVDKGCA-------PVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLM 414

Query: 305 EGIASVDKAAESSN 318
           +G+  V +  E+ N
Sbjct: 415 QGLCQVGRPQEALN 428



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 135/258 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +P++YTY + + G C   +++EA ++L+ M + G  P   +YN LI+GYC +  
Sbjct: 328 MTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRR 387

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S   EM ++ + P   TY+ L+  L    +  EA ++ KEM   G++PD +TY+ 
Sbjct: 388 LDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYST 447

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G+  +A  L   M    I+P ++ Y  LI  +    ++  A +LF    A G
Sbjct: 448 LLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADG 507

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P I  +  +I G    G  + A+ L ++M+     P+  +YN ++ G  +      A 
Sbjct: 508 IQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAI 567

Query: 241 RLLDQMKRRGIKPDHISF 258
           RL+D+M  +    D  +F
Sbjct: 568 RLIDEMVGKRFSADSSTF 585



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 114/227 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P  ++Y   ++G CK  RL+EA  +L +M E  L P  VTY+TL+ G C  G 
Sbjct: 363 MVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGR 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   EM   G++P   TY+ L+  L     + EA  +LK M E  I PD + YNI
Sbjct: 423 PQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNI 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G    G  + A  L  ++   GIQPT+ TYT +I  L K+    EA +LF      G
Sbjct: 483 LIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDG 542

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            LP+   +N +I G   N +   A  L+ EM   +   D  T+  L+
Sbjct: 543 FLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLL 589



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M++    P+   +   +  +  +++      +  +M   G+  +  + NILIN  CR  +
Sbjct: 83  MLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNH 142

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A S+  +M   GIQP  +T+ +LI     +  + EA  LF   + +G  PD++ ++ 
Sbjct: 143 VVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYST 202

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +I+G C +GN   A  LL++M+     P+ V Y T++   C+   V +A  LL +M  RG
Sbjct: 203 VINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRG 262

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           I PD +       TY+ ++ G C     + A  L  EMV + + P+  T+  L++G+   
Sbjct: 263 IPPDVV-------TYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKE 315

Query: 311 DKAAES 316
              +E+
Sbjct: 316 GMVSEA 321



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 97/193 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+ TY + + G+C+ GR +EA  + ++M  +GL+P  +TY+TL+DG C  G+
Sbjct: 398 MSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGH 457

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M +  I P    YN+LI  + +  K+  A ++  ++   GI P   TY I
Sbjct: 458 LDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTI 517

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  + G + +A+ L  +M   G  P   +Y  +I    +      A +L +  + K 
Sbjct: 518 MIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKR 577

Query: 181 MLPDIVMFNALID 193
              D   F  L+D
Sbjct: 578 FSADSSTFQMLLD 590


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/319 (36%), Positives = 175/319 (54%), Gaps = 11/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD  T+ + + G  +EG L+ A R+ EQM E G   + V+ N ++ G+C +G 
Sbjct: 215 MPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGR 274

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +E A +F  EM  Q G  P   T+N L++ L     +  A +++  M ++G  PD  TYN
Sbjct: 275 VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYN 334

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+ G  K+A  + D+MI +   P  +TY +LI  L K+N++ EA +L     +K
Sbjct: 335 SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 394

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+LPD+  FN+LI G C   N   A  L +EM      PDE TYN L+   C +GK++EA
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA 454

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L QM+  G     I       TYN LI G CK  +   AEE+  EM   G++ +  T
Sbjct: 455 LNMLKQMELSGCARSVI-------TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 507

Query: 300 YFSLIEGIAS---VDKAAE 315
           Y +LI+G+     V+ AA+
Sbjct: 508 YNTLIDGLCKSRRVEDAAQ 526



 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD YT+ + V+G+CK G ++ A  +++ M + G  P   TYN++I G C  G ++ A
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M+ +   P   TYN LI  L  E ++ EA ++ + +  KGI+PD  T+N LI G
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C   N + A  L +EM  KG +P   TY  LI  L  + ++ EA  + +     G    
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +N LIDG C       A  +  EM+   V  + VTYNTL+ G C+  +VE+A +L+D
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMD 529

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G KPD       + TYN+L+   C+  +   A ++++ M S G  PD  TY +LI
Sbjct: 530 QMIMEGQKPD-------KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582

Query: 305 EGIASVDKAAESS 317
            G+    +   +S
Sbjct: 583 SGLCKAGRVEVAS 595



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD YTY S +SG+CK G ++EA  +L+QM      P  VTYNTLI   C +  
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      +  +GI+P   T+N LI  L + R    A ++ +EM  KG  PD  TYN+
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G   +A ++  +M   G   +++TY +LI    K N+  EA+++F+     G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V +N LIDG C +  +E A  L+ +M      PD+ TYN+L+   CR G +++A 
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAA 560

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++  M   G +PD +       TY  LI GLCK    ++A +LLR +  KGI    + Y
Sbjct: 561 DIVQAMTSNGCEPDIV-------TYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+G+    K  E+ N
Sbjct: 614 NPVIQGLFRKRKTTEAIN 631



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 167/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R   P++ TY + +S +CKE ++EEA+ +   +   G++P   T+N+LI G C   N
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A    +EM  +G  P   TYN+LI  L  + K+ EA +MLK+M   G     ITYN 
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+    ++A  + DEM   G+    +TY +LI  L K  R+ +A QL +  + +G
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +N+L+   C  G+I++A  +++ M      PD VTY TL+ G C+ G+VE A 
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  ++ +GI       N T   YN +IQGL + ++   A  L REM+ +   P D   
Sbjct: 596 KLLRSIQMKGI-------NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVS 648

Query: 301 FSLI 304
           + ++
Sbjct: 649 YRIV 652



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 160/315 (50%), Gaps = 8/315 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++PD++ Y   ++ +     L+       +M   G+ P   T+N LI   C    L  A
Sbjct: 149 GLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPA 208

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++M   G++P   T+  ++   + E  +  A  + ++M E G    +++ N++++G
Sbjct: 209 ILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHG 268

Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           +C+ G  + A +   EM ++ G  P   T+ +L+  L K   +  A ++ +  L +G  P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+  +N++I G C  G ++ A  +L +M      P+ VTYNTL+   C++ +VEEA  L 
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +  +GI PD         T+N+LIQGLC  +   +A EL  EM SKG  PD+ TY  L
Sbjct: 389 RVLTSKGILPD-------VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNML 441

Query: 304 IEGIASVDKAAESSN 318
           I+ + S  K  E+ N
Sbjct: 442 IDSLCSKGKLDEALN 456



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 143/316 (45%), Gaps = 42/316 (13%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K     P+   Y   +  + + G  ++  ++LE MK +       T+  LI+ Y      
Sbjct: 75  KKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQ---- 130

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
              F  +DE++        S  + +I E                    G+ PD+  YN +
Sbjct: 131 ---FELQDEIL--------SVVDWMIDEF-------------------GLKPDTHFYNRM 160

Query: 122 INGYCRCGNAKKAFSL-HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +N     GN+ K   + H +M   GI+P + T+  LI  L + +++  A  + E+  + G
Sbjct: 161 LNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYG 219

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   F  ++ G+   G+++ A  + ++M         V+ N ++HG C++G+VE+A 
Sbjct: 220 LVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDAL 279

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             + +M  +        F P + T+N L+ GLCK      A E++  M+ +G  PD  TY
Sbjct: 280 NFIQEMSNQD------GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTY 333

Query: 301 FSLIEGIASVDKAAES 316
            S+I G+  + +  E+
Sbjct: 334 NSVISGLCKLGEVKEA 349



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 2/199 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV  +S TY + + G+CK  R+E+A+++++QM   G  P   TYN+L+  +C  G+
Sbjct: 496 MEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD 555

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M   G  P   TY  LI  L    ++  A  +L+ +  KGI      YN 
Sbjct: 556 IKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNP 615

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF--VLSKQNRMIEADQLFENFLA 178
           +I G  R     +A +L  EM+ +   P       ++F  + +    + EA       L 
Sbjct: 616 VIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE 675

Query: 179 KGMLPDIVMFNALIDGHCT 197
           KG +P+      L +G  T
Sbjct: 676 KGFVPEFSSLYMLAEGLLT 694


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 182/347 (52%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   D+ TYG  + G+C+ G+++EA  +L ++      P  V YNTLI GY   G 
Sbjct: 301 MLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGR 356

Query: 61  LEMAFSF-RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            E A     + MV  G  P A T+N++I  L+ +  +V A ++L EM  K   P+ ITY 
Sbjct: 357 FEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYT 416

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ILING+C+ G  ++A  + + M  KG+    + Y  LI  L K   + EA QLF     K
Sbjct: 417 ILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGK 476

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  FN+LI+G C N  +E A SL  +M    V  + VTYNTL+H    +  +++A
Sbjct: 477 GCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQA 536

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
            +L+D+M  RG   D+I++N                            PT ++ N LI G
Sbjct: 537 FKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISG 596

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LC+  + + A + L++M+ +G+TPD  TY SLI G+  +    E+SN
Sbjct: 597 LCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASN 643



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 164/308 (53%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++  +P+  TY   ++G CK+GRLEEA+ ++  M   GL    V YN LI   C  GN
Sbjct: 403 MVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGN 462

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM  +G  P   T+N LI+ L    KM EA  +  +M  +G++ +++TYN 
Sbjct: 463 IEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNT 522

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +    + ++AF L DEM+ +G     +TY  LI  L K   + +   LFE  L KG
Sbjct: 523 LVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKG 582

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P I+  N LI G C  G +  A   L++M    + PD VTYN+L++G C+ G V+EA 
Sbjct: 583 IFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEAS 642

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++++  GI+PD I       TYN LI   C     + A  LL + V  G  P++ T+
Sbjct: 643 NLFNKLQSEGIRPDAI-------TYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTW 695

Query: 301 FSLIEGIA 308
             LI  I 
Sbjct: 696 SILINYIV 703



 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 158/304 (51%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+YT+   + G+ K+G L  A  +L +M      P  +TY  LI+G+C +G 
Sbjct: 368 MVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGR 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    + M  +G+      YN LI  L  +  + EA  +  EM  KG  PD  T+N 
Sbjct: 428 LEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNS 487

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+    ++A SL+ +M  +G+    +TY +L+     ++ + +A +L +  L +G
Sbjct: 488 LINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRG 547

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  G +E+   L +EM    + P  ++ N L+ G CR GKV +A 
Sbjct: 548 CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDAL 607

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + L  M  RG+ PD +       TYN+LI GLCK      A  L  ++ S+GI PD  TY
Sbjct: 608 KFLQDMIHRGLTPDIV-------TYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITY 660

Query: 301 FSLI 304
            +LI
Sbjct: 661 NTLI 664



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 158/317 (49%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRGV P  YT+G  +  +C    ++ A  +L  M ++G VP +V Y TLI   C    
Sbjct: 196 MLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNR 255

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    ++M      P   T+N +IH L    ++ EA  +L  M  +G   D++TY  
Sbjct: 256 VSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGY 315

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA-DQLFENFLAK 179
           L++G CR G   +A +L    ++K   P  + Y +LI       R  EA D L+ N +  
Sbjct: 316 LMHGLCRMGQVDEARAL----LNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIA 371

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD   FN +IDG    G +  A  LL EM   +  P+ +TY  L++G C+QG++EEA
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEA 431

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +++ M  +G+  + +        YN LI  LCK+   + A +L  EM  KG  PD  T
Sbjct: 432 AEIVNSMSAKGLSLNTVG-------YNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYT 484

Query: 300 YFSLIEGIASVDKAAES 316
           + SLI G+    K  E+
Sbjct: 485 FNSLINGLCKNHKMEEA 501



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 146/331 (44%), Gaps = 41/331 (12%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM---PTA 80
           G  +   ++L+QMK+ GL+     +  ++  Y   G    A     +M   G+    PT 
Sbjct: 113 GDFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDM--WGVYSCDPTF 170

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            +YN+++  L+       A ++  +M  +G+ P   T+ +++   C       A SL  +
Sbjct: 171 KSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRD 230

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M   G  P  + Y +LI  L + NR+ EA QL E+       PD+  FN +I G C  G 
Sbjct: 231 MAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGR 290

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN- 259
           I  A  LL  M       D +TY  LMHG CR G+V+EAR LL+++      P+ + +N 
Sbjct: 291 IHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP----NPNTVLYNT 346

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P   T+N +I GL K      A ELL EMV+K
Sbjct: 347 LISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAK 406

Query: 292 GITPDDNTYFSLIEGIAS---VDKAAESSNS 319
              P+  TY  LI G      +++AAE  NS
Sbjct: 407 RFEPNVITYTILINGFCKQGRLEEAAEIVNS 437



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   D+ TY   +  +CK G +E+   + E+M   G+ PT ++ N LI G C  G 
Sbjct: 543 MLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGK 602

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  +M+ +G+ P   TYN LI+ L     + EA ++  ++  +GI PD+ITYN 
Sbjct: 603 VNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNT 662

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           LI+ +C  G    A  L  + +  G  P  +T++ LI  + K+
Sbjct: 663 LISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVKK 705



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 59/294 (20%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-------------- 112
           F+    ++G   T     LLI +L         + +LK+M ++G++              
Sbjct: 86  FQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDEGLLFKESLFILIMKHYG 145

Query: 113 ----------------------PDSITYN----ILINGYCRCGNAKKAFSLHDEMIHKGI 146
                                 P   +YN    IL++G C     + A ++  +M+ +G+
Sbjct: 146 KAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDC----PRVAPNVFYDMLSRGV 201

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            PT+ T+  ++  L   + +  A  L  +    G +P+ V++  LI   C N  +  A  
Sbjct: 202 SPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQ 261

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           LL++M  M   PD  T+N ++HG CR G++ EA +LLD+M  RG   D        LTY 
Sbjct: 262 LLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTD-------ALTYG 314

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNT--YFSLIEGIASVDKAAESSN 318
            L+ GLC+  + D A  LL ++      P+ NT  Y +LI G  +  +  E+ +
Sbjct: 315 YLMHGLCRMGQVDEARALLNKI------PNPNTVLYNTLISGYVASGRFEEAKD 362


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 185/346 (53%), Gaps = 31/346 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGN 60
           +++G  P   TY + + G+CK GR+E A  + + M  + G  PT VTY+TLIDG C    
Sbjct: 57  RAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHE 116

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++      +EM  +G  P A TYN L++ LL + +  EA  +L++M   G  P+ IT+ +
Sbjct: 117 VDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGL 176

Query: 121 LINGYCRCGNAKKAFSLHDE--MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +I G C+ G  + AF + DE  MI  G+ P ++T+ S++  L K+ R+++A  +F+  L 
Sbjct: 177 IIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALE 236

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G  P++V ++ LIDG      ++ A  LL +M  +    + VTY+T++ G  + G++E+
Sbjct: 237 RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMED 296

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           A  +L QM+  G  PD +++N                            P+ +TY  L  
Sbjct: 297 AVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCH 356

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           GLC++   D A E+L  M ++G  P+  TY S+++G+    +  E+
Sbjct: 357 GLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEA 402



 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 167/310 (53%), Gaps = 8/310 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG +P+  TY + + G+ K  +++EA ++L +M E G     VTY+T++DG    G +E 
Sbjct: 237 RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMED 296

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M   G +P A TYN LI      +++ EA  +L+EM E G  P  +TY  L +
Sbjct: 297 AVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCH 356

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML- 182
           G CR G   +A  + D M  +G  P  +TY+S++  L K  R+ EA   FE      ++ 
Sbjct: 357 GLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVA 416

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P ++ ++ALIDG C  G I+ A+  L+ M R    PD VT++ L++G C  G+++    L
Sbjct: 417 PHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLEL 476

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              M  RG  PD +       TY  L+  LC+    D A +L ++M S G++PD +T  +
Sbjct: 477 FRGMAERGCVPDMV-------TYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRT 529

Query: 303 LIEGIASVDK 312
           +I G+  V++
Sbjct: 530 MIHGLLEVNR 539



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  T+ S + G+CKE R+ +A  + ++  E G  P  VTY+TLIDG      
Sbjct: 199 MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAK 258

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +MV+ G      TY+ ++  LL   +M +A  +L++M + G +PD++TYN 
Sbjct: 259 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 318

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ +    ++A  L  EM+  G  P+++TYT+L   L +  R  EA ++ +   A+G
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 378

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEA 239
             P+ + +++++DG C  G +  A    ++M R + V P  + Y+ L+ G C+ GK++EA
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEA 438

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
              L++M R G  PD ++F       + LI GLC     D   EL R M  +G  PD  T
Sbjct: 439 YEFLERMIRAGRIPDVVTF-------SILINGLCDAGRIDTGLELFRGMAERGCVPDMVT 491

Query: 300 YFSLIEGIASVDKAAES 316
           Y +L++ +    +  E+
Sbjct: 492 YATLVDRLCRASRVDEA 508



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/273 (35%), Positives = 148/273 (54%), Gaps = 8/273 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G + ++ TY + V G+ K GR+E+A  +L QM++ G +P AVTYNTLIDG+  +  
Sbjct: 269 MVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQR 328

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM++ G  P+  TY  L H L    +  EA ++L  M  +G  P++ITY+ 
Sbjct: 329 LREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSS 388

Query: 121 LINGYCRCGNAKKAFSLHDEMIH-KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +++G C+ G   +A    ++M   + + P ++ Y++LI  L K  ++ EA +  E  +  
Sbjct: 389 IVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRA 448

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G +PD+V F+ LI+G C  G I+    L + M      PD VTY TL+   CR  +V+EA
Sbjct: 449 GRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEA 508

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
             L  QM+  G+ PD       R T   +I GL
Sbjct: 509 FDLFQQMRSDGLSPD-------RSTRRTMIHGL 534



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 154/269 (57%), Gaps = 10/269 (3%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           +IDG C    ++ A +   +MV + I P   TY  LI  L  +R++ EA D+ +E   KG
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEM-IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
             P  +TYN +I+G C+CG  + A +L+D+M IH G +PT++TY++LI  L + + + + 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +L E    +G  P+ V +N L++     G  + AFSLL++M      P+ +T+  ++ G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 230 RCRQGKVEEARRLLDQ--MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
            C++G++E A R++D+  M   G+ PD I+F       N+++ GLCK Q    A  + + 
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITF-------NSVLDGLCKEQRILDAHNVFKR 233

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + +G  P+  TY +LI+G++ + K  E+
Sbjct: 234 ALERGCRPNVVTYSTLIDGLSKMAKMDEA 262



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 125/246 (50%), Gaps = 1/246 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD+ TY + + G  K  RL EA  +L +M E G  P+ VTY TL  G C  G 
Sbjct: 304 MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR 363

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-PDSITYN 119
            + A    D M  +G  P A TY+ ++  L    ++ EA    ++M    +V P  I Y+
Sbjct: 364 FDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYS 423

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G C+ G   +A+   + MI  G  P ++T++ LI  L    R+    +LF     +
Sbjct: 424 ALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAER 483

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G +PD+V +  L+D  C    ++ AF L ++M    + PD  T  T++HG     + E+A
Sbjct: 484 GCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDA 543

Query: 240 RRLLDQ 245
           +R+ D+
Sbjct: 544 KRIQDE 549


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 173/310 (55%), Gaps = 11/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK G    A R+L  M++    P  V ++TLID  C    
Sbjct: 166 MIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ 225

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   EM+ +GI P   TYN LIH L  L E K V    ++ EM +  I+PD  T 
Sbjct: 226 VTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT--LMNEMVDSKIMPDVFTL 283

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++  C+ G   +A  + D MIH+G++P ++TY +L+     +N +  A ++F+  + 
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH 343

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           K  + +++ +N LI+G+C   ++++A  L +EM R ++ P+ VTYNTL+HG C  G++++
Sbjct: 344 KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQD 403

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L  +M  RG  PD +       TY  L   LCKN+  D A  LL+ +      PD  
Sbjct: 404 AISLFHEMVARGQIPDLV-------TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQ 456

Query: 299 TYFSLIEGIA 308
            Y ++++G+ 
Sbjct: 457 IYTTILDGMC 466



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 172/318 (54%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+  TY S + G+CK    +  + ++ +M ++ ++P   T NT++D  C +G 
Sbjct: 236 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGM 295

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M+ +G+ P   TYN L+    +  ++  A  +   M  K  V + I+YN 
Sbjct: 296 VAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNT 355

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+  +  KA  L +EM  + + P  +TY +LI  L    R+ +A  LF   +A+G
Sbjct: 356 LINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG 415

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  L D  C N ++++A +LLK ++     PD   Y T++ G CR G++E+AR
Sbjct: 416 QIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDAR 475

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   +  +G++P+         TYN +I GLCK  +G LAE  +L  EM   G +P+D 
Sbjct: 476 DLFSNLSSKGLQPN-------VWTYNIMIHGLCK--QGLLAEASKLFSEMNKNGCSPNDC 526

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  +  G    ++A  +
Sbjct: 527 TYNLITRGFLRNNEALRT 544



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 155/316 (49%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++ +C   R++ A   L ++ + G  P A T+ TLI G C +G 
Sbjct: 96  MDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 155

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+ +G  P   TY  LI+ L        A  +L+ M +    P+ + ++ 
Sbjct: 156 IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFST 215

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+     +AF++  EMI KGI P ++TY SLI  L K         L    +   
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSK 275

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+   N ++D  C  G +  A  ++  M    V P+ VTYN LM G C + +V+ A 
Sbjct: 276 IMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAV 335

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +    + IS       YN LI G CK Q  D A  L  EM  + +TP+  TY
Sbjct: 336 KVFDTMVHKDCVANVIS-------YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTY 388

Query: 301 FSLIEGIASVDKAAES 316
            +LI G+  V +  ++
Sbjct: 389 NTLIHGLCHVGRLQDA 404



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 159/309 (51%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K         +  QM   G+ P   T   +I+  C+   ++ AFS 
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P A+T+  LI  L +E K+ EA  +  +M  +G  P+ +TY  LING C+
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M     QP ++ +++LI  L K  ++ EA  +F   + KG+ P+IV 
Sbjct: 188 VGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVT 247

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI G C     +   +L+ EM   K+ PD  T NT++   C++G V EA  ++D M 
Sbjct: 248 YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMI 307

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
            RG++P+ +       TYNAL+ G C   E D+A ++   MV K    +  +Y +LI G 
Sbjct: 308 HRGVEPNVV-------TYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGY 360

Query: 307 --IASVDKA 313
             I SVDKA
Sbjct: 361 CKIQSVDKA 369



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 129/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+P+  TY + + G C    ++ A ++ + M     V   ++YNTLI+GYC   +
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQS 365

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM +Q + P   TYN LIH L    ++ +A  +  EM  +G +PD +TY  
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +  C+  +  KA +L   +      P +  YT+++  + +   + +A  LF N  +KG
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +N +I G C  G +  A  L  EM++    P++ TYN +  G  R  +     
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545

Query: 241 RLLDQMKRRGIKPD 254
            LL++M  RG   D
Sbjct: 546 ELLEEMLARGFSVD 559



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 90/192 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P++ TY + + G+C  GRL++A  +  +M   G +P  VTY TL D  C   +
Sbjct: 376 MSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRH 435

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +    +      P    Y  ++  +    ++ +A D+   +  KG+ P+  TYNI
Sbjct: 436 LDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNI 495

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G   +A  L  EM   G  P   TY  +     + N  +   +L E  LA+G
Sbjct: 496 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG 555

Query: 181 MLPDIVMFNALI 192
              D+     L+
Sbjct: 556 FSVDVSTTTLLV 567



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  PD  TY +    +CK   L++A  +L+ ++ +   P    Y T++DG C  G 
Sbjct: 411 MVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGE 470

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P   TYN++IH L  +  + EA  +  EM + G  P+  TYN+
Sbjct: 471 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 530

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +  G+ R   A +   L +EM+ +G    + T T L+ +LS
Sbjct: 531 ITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLS 571



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 7/186 (3%)

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A S  + M+HK   P+ + +  L+  ++K         L     + G+ PD+     +I
Sbjct: 53  EALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVI 112

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +  C    ++ AFS L ++ ++   PD  T+ TL+ G C +GK+ EA  L D+M   G  
Sbjct: 113 NSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG-- 170

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
                F P  +TY  LI GLCK      A  LLR M      P+   + +LI+ +    +
Sbjct: 171 -----FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ 225

Query: 313 AAESSN 318
             E+ N
Sbjct: 226 VTEAFN 231


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 162/304 (53%), Gaps = 8/304 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   P+ YT+   +   CK+G+L +  ++ EQM +NG+ P  + YN LIDGY  KG ++ 
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EMV  G+ P+  TYN L++    E KM EA ++ K M EKG  PD +TY+ +I+
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 124 GYCRCGNAKKAFS-LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           G C+ G   +A   L  +MI +G     + Y +LI  L K   +  A +L E   +KG +
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV 181

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD + +N ++ G C  G +  A      M      PD V YN L+    ++GK +EA +L
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              +  +G  PD +       TYN+++ GL +    D AEE+ ++MV+ G  P+  TY  
Sbjct: 242 FKDVIAKGYMPDTV-------TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSI 294

Query: 303 LIEG 306
           ++ G
Sbjct: 295 VLSG 298



 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 172/336 (51%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRML-EQMKENGLVPTAVTYNTLIDGYCNKG 59
           M  +G +PD  TY + +SG+CK G++ EA  ML  +M E G     V YN LI+G C   
Sbjct: 104 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDE 163

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N+E A+   +EM  +G +P   TYN ++  L    K+ EA      M  +G  PD + YN
Sbjct: 164 NIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYN 223

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++   + G   +A  L  ++I KG  P  +TY S++  L++++ M EA+++F+  +A 
Sbjct: 224 GLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVAS 283

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+   ++ ++ GHC    ++ A  +L+EM ++   PD VTYN L+ G C+   V++A
Sbjct: 284 GCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 343

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             L   M   G  PD +S++                            P  +T+N L+ G
Sbjct: 344 HELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDG 403

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LCK  + D A++LL +M   G  PD   Y +L+ G+
Sbjct: 404 LCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL 439



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 176/352 (50%), Gaps = 43/352 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD   Y   + G  K+GR++EA+R+ E+M   GL P+  TYN+L++ +C +  
Sbjct: 34  MLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETK 93

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM------------------ 102
           ++ A      M ++G  P   TY+ +I  L    K+ EA +M                  
Sbjct: 94  MKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYN 153

Query: 103 ------------------LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                             L+EM  KG VPD+ITYN +++G CR G   +A    D M  +
Sbjct: 154 ALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSR 213

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G  P ++ Y  L+  L K+ +  EA +LF++ +AKG +PD V +N+++ G     N++ A
Sbjct: 214 GYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEA 273

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             + K+M      P+  TY+ ++ G CR  KV++A ++L++M + G  PD +       T
Sbjct: 274 EEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVV-------T 326

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN L+ GLCK    D A EL   MV  G  PD  +Y  ++ G+   +K  ++
Sbjct: 327 YNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDA 378



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 158/296 (53%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD+ TY + +SG+C+ G++ EA +  + M   G  P  V YN L+D    +G 
Sbjct: 175 MASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 234

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +++ +G MP   TYN ++  L  +  M EA++M K+M   G  P+  TY+I
Sbjct: 235 TDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSI 294

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+CR      A  + +EM   G  P ++TY  L+  L K N + +A +LF   +  G
Sbjct: 295 VLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 354

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV ++ +++G C    +  A  L   M   K+ PD VT+N LM G C+ GK++EA+
Sbjct: 355 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 414

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            LLDQM   G  PD+++       YN L+ GL K      A+ L + M  KG   D
Sbjct: 415 DLLDQMTCSGCAPDYVA-------YNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 175/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V P   TY  F++G+ K  +++EA+ +L++M E G VP  V YNTLIDGYC  GN
Sbjct: 317 MVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGN 376

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   RD+M+ +GI P + T N LI       ++ +A+++L+EM  +G+  +  ++++
Sbjct: 377 ISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSM 436

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN  C       A     EM+ + ++P     T+L+  L K  +  EA +L+   L KG
Sbjct: 437 VINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKG 496

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P+IV  NALI G C  GN++    LL++M    +  D +TYNTL+ G C++GKV+E  
Sbjct: 497 FVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGF 556

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M ++GI+PD         T+N L+ GLC   + D A  L  E    G  P+  TY
Sbjct: 557 ELKEEMVKKGIQPD-------IYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTY 609

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+G    +K  E  N
Sbjct: 610 GVMIDGYCKANKVEEGEN 627



 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 184/350 (52%), Gaps = 46/350 (13%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD + + + ++  CK  R ++A  +  +M++ G+ P  VTYN +I G C  G L+ A
Sbjct: 251 GIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEA 310

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           + F+++MVK+ + P+  TY++ I+ L+   K+ EA+ +LKEM E G VP+ + YN LI+G
Sbjct: 311 YRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDG 370

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ GN  +A  + D+M+ KGI P  +T  SLI    K +++ +A+ + E  + +G+  +
Sbjct: 371 YCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPIN 430

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE------------------------ 220
              F+ +I+  C       A   ++EM    + P++                        
Sbjct: 431 QGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWC 490

Query: 221 -----------VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                      VT N L+HG C+ G ++E  +LL  M  RG+  D       R+TYN LI
Sbjct: 491 RLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFD-------RITYNTLI 543

Query: 270 QGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            G CK  EG + E  EL  EMV KGI PD  T+  L+ G+ + DK  E+S
Sbjct: 544 SGCCK--EGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEAS 591



 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 168/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D  TY + +SG CKEG+++E   + E+M + G+ P   T+N L+ G CN   
Sbjct: 527 MLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADK 586

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     E  K G +P   TY ++I       K+ E +++L E+  K +  +S+ YN 
Sbjct: 587 IDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNS 646

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  YC  GN   AF L D+M  +G+  +  TY+SL+  L     + +A  L +    +G
Sbjct: 647 LIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEG 706

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++V +  +I G+   G + +   +L+EM    +HP++ TY  ++ G C+ GK +EA 
Sbjct: 707 LLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAA 766

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL++M  +GI PD +       TYNA   GLCK  + + A ++  EM S  +  D+ TY
Sbjct: 767 KLLNEMTEKGILPDAV-------TYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITY 819

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 820 TTLIDG 825



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 171/344 (49%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R ++P+     + VSG+CK G+  EA  +  ++   G VP  VT N LI G C  GN
Sbjct: 457 MLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGN 516

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       +M+++G++    TYN LI     E K+ E  ++ +EM +KGI PD  T+N+
Sbjct: 517 MQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNL 576

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C      +A  L  E    G  P + TY  +I    K N++ E + L    ++K 
Sbjct: 577 LLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKK 636

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++N+LI  +C NGN+  AF L  +M    V     TY++LMHG C  G V++A+
Sbjct: 637 LELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAK 696

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            LLD+M++ G+ P+ + +                            +P + TY  +I G 
Sbjct: 697 HLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGF 756

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK  +   A +LL EM  KGI PD  TY +   G+    K  E+
Sbjct: 757 CKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEA 800



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 147/288 (51%), Gaps = 7/288 (2%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A+ +   + + GL P+  T   L+        L+ ++   D +   GI+P    ++ +I+
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                 +  +A  +  +M + G+ P+ +TYN +I+G C+ G   +A+   ++M+ + + P
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           +++TY+  I  L K  ++ EA+ + +     G +P+ V++N LIDG+C  GNI  A  + 
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            +M    + P+ VT N+L+ G C+  ++ +A  +L++M  RG+  +  SF       + +
Sbjct: 385 DDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSF-------SMV 437

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           I  LC       A   +REM+ + + P+D    +L+ G+    K  E+
Sbjct: 438 INWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEA 485



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 45/189 (23%)

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G A   FSL   +  KG+ P++ T T L+  L K N + ++ ++++     G++PD+ +F
Sbjct: 203 GFAADVFSL---LAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLF 259

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           + +I+          AF                         C+  + ++A  L  +M++
Sbjct: 260 STMIN----------AF-------------------------CKGHREDDAIGLFSKMEK 284

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G+ P+ +       TYN +I GLCK+   D A     +MV + ++P   TY   I G+ 
Sbjct: 285 LGVAPNVV-------TYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLI 337

Query: 309 SVDKAAESS 317
            ++K  E++
Sbjct: 338 KLEKIDEAN 346


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+P+ Y Y  ++  +C+E ++EEA +M E MK +G+VP   TY+ +IDGYC  GN
Sbjct: 259 MTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGN 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+    E++   ++P    +  L+      R++V A  +   M + G+ P+   YN 
Sbjct: 319 LRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNC 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ GN  +A  L  EM    + P + TYT LI  L  + R+ EA++LF+    + 
Sbjct: 379 LIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNER 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +N+LI G C   NIE+A  L  EM    V P+ +T++TL+ G C+   ++ A 
Sbjct: 439 IFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAM 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +GI PD +       TY  LI    K      A  L  +M+  GI P+D+T+
Sbjct: 499 GLYFEMTIKGIVPDVV-------TYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTF 551

Query: 301 FSLIEGI 307
             L++G 
Sbjct: 552 ACLVDGF 558



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 158/303 (52%), Gaps = 7/303 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PDS    + ++G+ +  R +      + M   GLVP    Y+ L      +G        
Sbjct: 196 PDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKL 255

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            DEM   G+ P    Y + I +L  E KM EA+ M + M   G+VP+  TY+ +I+GYC+
Sbjct: 256 LDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCK 315

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN ++A+ L+ E++   + P ++ + +L+    K   ++ A  LF + +  G+ P++ +
Sbjct: 316 TGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYV 375

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI G C +GN+  A  LL EM+ + + PD  TY  L++G C + ++ EA RL  +MK
Sbjct: 376 YNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMK 435

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              I P  +       TYN+LI G CK    + A +L  EM S G+ P+  T+ +LI+G 
Sbjct: 436 NERIFPSSV-------TYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGY 488

Query: 308 ASV 310
             V
Sbjct: 489 CKV 491



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 36/342 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV P+ YTY + + G CK G L +A  + +++    L+P  V + TL+DG+C    
Sbjct: 294 MKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARE 353

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHE------------------------------- 89
           L  A S    MVK G+ P    YN LIH                                
Sbjct: 354 LVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTI 413

Query: 90  ----LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
               L  E ++ EA+ + + M  + I P S+TYN LI+G+C+  N +KA  L  EM   G
Sbjct: 414 LINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSG 473

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P ++T+++LI    K   +  A  L+     KG++PD+V +  LID H    N++ A 
Sbjct: 474 VEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEAL 533

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT- 264
            L  +M    +HP++ T+  L+ G  ++G++ +A     +  +       +  +  +   
Sbjct: 534 RLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVG 593

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +  LI+GLC+N     A     +M S G+TPD  +Y S+++ 
Sbjct: 594 FTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKA 635



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 136/262 (51%), Gaps = 8/262 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S  + PD +TY   ++G+C E RL EA+R+ ++MK   + P++VTYN+LI G+C + N
Sbjct: 399 MESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYN 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM   G+ P   T++ LI      R +  A  +  EM  KGIVPD +TY  
Sbjct: 459 IEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTT 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA-DQLFEN---- 175
           LI+ + +  N K+A  L+ +M+  GI P   T+  L+    K+ R+ +A D   EN    
Sbjct: 519 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAA 578

Query: 176 ---FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
               + +      V F  LI+G C NG I RA     +M    V PD  +Y +++    R
Sbjct: 579 TGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLR 638

Query: 233 QGKVEEARRLLDQMKRRGIKPD 254
           + ++ +   L   M + GI P+
Sbjct: 639 EKRITDTMMLHCDMIKTGILPN 660



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 118/212 (55%), Gaps = 7/212 (3%)

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M  +G+VPD   Y++L     + G   K   L DEM   G++P +  YT  I  L ++N+
Sbjct: 224 MISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENK 283

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           M EA+++FE     G++P++  ++A+IDG+C  GN+ +A+ L KE+   ++ P+ V + T
Sbjct: 284 MEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGT 343

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+ G C+  ++  AR L   M + G+ P+          YN LI G CK+     A  LL
Sbjct: 344 LVDGFCKARELVAARSLFVHMVKFGVDPN-------LYVYNCLIHGQCKSGNMLEAMGLL 396

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            EM S  ++PD  TY  LI G+ + ++ AE++
Sbjct: 397 SEMESLNLSPDVFTYTILINGLCTEERLAEAN 428



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 43/247 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+  + P S TY S + G CKE  +E+A  +  +M  +G+ P  +T++TLIDGYC   N
Sbjct: 434 MKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRN 493

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-- 118
           ++ A     EM  +GI+P   TY  LI     E  M EA  +  +M E GI P+  T+  
Sbjct: 494 IKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFAC 553

Query: 119 -----------------------------------------NILINGYCRCGNAKKAFSL 137
                                                      LI G C+ G   +A   
Sbjct: 554 LVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRF 613

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
             +M   G+ P + +Y S++    ++ R+ +   L  + +  G+LP++++   L   +  
Sbjct: 614 FSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILPNLMVNQLLAMFYQE 673

Query: 198 NGNIERA 204
           NG +  A
Sbjct: 674 NGYLRSA 680


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/319 (33%), Positives = 178/319 (55%), Gaps = 13/319 (4%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  P+  TY + + G+C E R+ EA+R+  +M++ G  P  VTY TLI G C  GN+ +
Sbjct: 133 RGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINI 192

Query: 64  AFSFRDEMVKQ------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           A     EM+           P   TYN+++  L    +  EA  + +EM  +G++P  I+
Sbjct: 193 ALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIIS 252

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LI+G+C  G  +++  L DEM+ +G+QP M+T+  LI  L K+ ++IEA +L    +
Sbjct: 253 YNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMI 312

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G++PD+V +N+LI+G C  G++  A  L   M      PD ++YN L++G  +  KVE
Sbjct: 313 ESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVE 372

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA +L ++M   G +P+ I       TY++L++G+    + D A++L   M + GI  + 
Sbjct: 373 EAMKLYNEMLLVGKRPNVI-------TYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENS 425

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY   ++G+   D   E+
Sbjct: 426 YTYGIFLDGLCKNDCLFEA 444



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 173/344 (50%), Gaps = 42/344 (12%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TY   V G+CK GR +EA ++ E+MK  G++P+ ++YN+LI G+C  G  E +  
Sbjct: 212 KPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKR 271

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             DEM+ QG+ P   T+N+LI  L  E K++EA  +L  M E GIVPD +TYN LI G+C
Sbjct: 272 LLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFC 331

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G+   A  L   M  KG +P +++Y  LI   SK  ++ EA +L+   L  G  P+++
Sbjct: 332 MVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVI 391

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY----------------------- 223
            +++L+ G    G ++ A  L   M    +  +  TY                       
Sbjct: 392 TYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL 451

Query: 224 ------------NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                       N L+ G C+ GK+E A  L +++   G +P+ +       TY  +I G
Sbjct: 452 KSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVV-------TYTIMIHG 504

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            C+  + D A  L+++M + G TPD  TY +L+ G    +K  E
Sbjct: 505 FCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEE 548



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 160/315 (50%), Gaps = 13/315 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P   ++   +SG+ K     +   +  QM+ +GL     T N L++  CN   L   F+ 
Sbjct: 67  PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAA 126

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++++G  P   TYN LI  L ME ++ EA  +   M + G  PD +TY  LI G C 
Sbjct: 127 FAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCG 186

Query: 128 CGNAKKAFSLHDEMIHK------GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            GN   A  LH EM++         +P ++TY  ++  L K  R  EA QLFE    +GM
Sbjct: 187 TGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGM 246

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P I+ +N+LI G C  G  E +  LL EM    + PD VT+N L+   C++GKV EA++
Sbjct: 247 IPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKK 306

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL  M   GI PD +       TYN+LI+G C   + + A EL   M SKG  PD  +Y 
Sbjct: 307 LLGVMIESGIVPDLV-------TYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYN 359

Query: 302 SLIEGIASVDKAAES 316
            LI G +   K  E+
Sbjct: 360 VLINGYSKTLKVEEA 374



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 164/315 (52%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+QPD  T+   +  +CKEG++ EA ++L  M E+G+VP  VTYN+LI+G+C  G+
Sbjct: 276 MLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD 335

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A      M  +G  P   +YN+LI+      K+ EA  +  EM   G  P+ ITY+ 
Sbjct: 336 LNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDS 395

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G    G    A  L   M   GI     TY   +  L K + + EA +LF    +  
Sbjct: 396 LLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSN 455

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +I   N LIDG C  G +E A+ L +++      P+ VTY  ++HG CR+G+V++A 
Sbjct: 456 FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKAN 515

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M+  G  PD I       TYN L++G  ++ + +   +LL  M  K ++PD  T 
Sbjct: 516 VLIQKMEANGCTPDII-------TYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITC 568

Query: 301 FSLIEGIASVDKAAE 315
             +++ ++  +K  E
Sbjct: 569 SIVVDMLSKDEKYQE 583



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 143/292 (48%), Gaps = 36/292 (12%)

Query: 55  YCNKGNLEM--AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
           +C  GN+    A  F   M++    P+ S++N L+  L   +   +   +  +M   G+ 
Sbjct: 42  HCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLS 101

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
            D  T NIL+N  C     ++ F+    ++ +G  P ++TY +LI  L  ++R+ EA +L
Sbjct: 102 SDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRL 161

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM----DRMKVH--PDEVTYNTL 226
           F      G  PD+V +  LI G C  GNI  A  L +EM     R +++  P+ +TYN +
Sbjct: 162 FLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNII 221

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------------------------- 259
           + G C+ G+ +EA++L ++MK +G+ P  IS+N                           
Sbjct: 222 VDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGL 281

Query: 260 -PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            P  +T+N LI  LCK  +   A++LL  M+  GI PD  TY SLIEG   V
Sbjct: 282 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMV 333



 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 1/188 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G+  +SYTYG F+ G+CK   L EA ++  ++K +         N LIDG C  G 
Sbjct: 416 MKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGK 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A+   +++  +G  P   TY ++IH    E ++ +A+ ++++M   G  PD ITYN 
Sbjct: 476 LETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNT 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF-LAK 179
           L+ G+      ++   L   M  K + P  +T + ++ +LSK  +  E   L   F + K
Sbjct: 536 LMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQK 595

Query: 180 GMLPDIVM 187
           G+   ++M
Sbjct: 596 GVDKHLLM 603


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/305 (35%), Positives = 166/305 (54%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD +TY + + G+CK+G L  A  ++ +M+  G  P  +TY  LID +C +G 
Sbjct: 380 MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 439

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +  DEM  +G+   A  YN LI  L  + K+ +A +M  +M  KG  PD  T+N 
Sbjct: 440 LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 499

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+    ++A  L+ +M+ +G+    +TY +LI    ++  M EA +L  + L +G
Sbjct: 500 LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 559

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  GNIE+  +L ++M    ++P+ ++ N L++G CR G ++ A 
Sbjct: 560 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHAL 619

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L  M  RG+ PD +       TYN+LI GLCK      A  L  ++  +GI PD  TY
Sbjct: 620 EFLRDMIHRGLTPDIV-------TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 672

Query: 301 FSLIE 305
            +LI 
Sbjct: 673 NTLIS 677



 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 184/347 (53%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+S+TYG  + G+C+ G+++EA  +L ++      P  V +NTLI+GY ++G 
Sbjct: 313 MLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLINGYVSRGR 368

Query: 61  LEMAFSFRDE-MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A +   E M+  G  P   TYN LI  L  +  +V A +++ EM  KG  P+ ITY 
Sbjct: 369 LDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYT 428

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ILI+ +C+ G  ++A ++ DEM  KG+    + Y  LI  L K  ++ +A  +F +  +K
Sbjct: 429 ILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSK 488

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  FN+LI G C     E A  L ++M    V  + +TYNTL+H   R+G ++EA
Sbjct: 489 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 548

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
            +L++ M  RG   D I++N                            P  ++ N LI G
Sbjct: 549 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 608

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LC+      A E LR+M+ +G+TPD  TY SLI G+    +A E+ N
Sbjct: 609 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALN 655



 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 166/317 (52%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ P  YT+G  +  +C    ++ A  +L+ M  +G VP A+ Y TLI      G 
Sbjct: 208 MLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGR 267

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       +EM+  G +P  +T+N  IH L    ++ EA  ++  M  +G  P+S TY +
Sbjct: 268 VNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGV 327

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF-ENFLAK 179
           L++G CR G   +A  L    ++K   P ++ + +LI     + R+ EA  +  E+ L+ 
Sbjct: 328 LMHGLCRMGKVDEARML----LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSV 383

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  +N LI G C  G +  A  L+ EM      P+ +TY  L+   C++G++EEA
Sbjct: 384 GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 443

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R +LD+M  +G+  + +        YN LI  LCK+++   A  +  +M SKG  PD  T
Sbjct: 444 RNVLDEMSGKGLALNAVG-------YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFT 496

Query: 300 YFSLIEGIASVDKAAES 316
           + SLI G+  V+K  E+
Sbjct: 497 FNSLIFGLCKVNKFEEA 513



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 144/279 (51%), Gaps = 9/279 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  ++  Y   +S +CK+ ++++A  M   M   G  P   T+N+LI G C    
Sbjct: 450 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 509

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     +M+ +G++    TYN LIH  L    M EA  ++ +M  +G   D ITYN 
Sbjct: 510 FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 569

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   CR GN +K  +L ++M+ KG+ P  ++   LI  L +   +  A +   + + +G
Sbjct: 570 LIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG 629

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N+LI+G C  G  + A +L  ++    + PD +TYNTL+   C++G  ++A 
Sbjct: 630 LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAH 689

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            LL     RG+      F P  +T+  L+    K  EGD
Sbjct: 690 LLLS----RGVDS---GFIPNEVTWYILVSNFIK--EGD 719



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 129/237 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G +PD +T+ S + G+CK  + EEA  + + M   G++   +TYNTLI  +  +G 
Sbjct: 485 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGA 544

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G      TYN LI  L     + +   + ++M  KG+ P++I+ NI
Sbjct: 545 MQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNI 604

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING CR GN + A     +MIH+G+ P ++TY SLI  L K  R  EA  LF+    +G
Sbjct: 605 LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG 664

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           + PD + +N LI  HC  G  + A  LL         P+EVT+  L+    ++G  E
Sbjct: 665 ICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 141/339 (41%), Gaps = 38/339 (11%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y   +  +   G  +    +L QMK+ G+V     +  ++  Y   G    A     +M
Sbjct: 113 VYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM 172

Query: 72  VKQGIM---PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             +G+    PT  +YN+++  LL         ++  EM  KGI P   T+ +++   C  
Sbjct: 173 --RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLV 230

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
                A +L  +M   G  P  + Y +LI  L K  R+ E  +L E  L  G +PD+  F
Sbjct: 231 NEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTF 290

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N  I G C    I  A  L+  M      P+  TY  LMHG CR GKV+EAR LL+++  
Sbjct: 291 NDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP- 349

Query: 249 RGIKPDHISFN-----------------------------PTRLTYNALIQGLCKNQEGD 279
               P+ + FN                             P   TYN LI GLCK     
Sbjct: 350 ---NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLV 406

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            A EL+ EM  KG  P+  TY  LI+      +  E+ N
Sbjct: 407 SARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN 445



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 12/253 (4%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F+    ++G       Y +LI +L    +    D +L +M ++GIV     + +++  Y 
Sbjct: 98  FQWAGTQKGYCHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYG 157

Query: 127 RCGNAKKAFSLHDEMIHKGI---QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           R G   +A  L  +M  +G+   +PT  +Y  ++ VL   N       +F   L+KG+ P
Sbjct: 158 RAGLPGQATRLLLDM--RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISP 215

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +  F  ++   C    ++ A +LLK+M R    P+ + Y TL+H   + G+V E  +LL
Sbjct: 216 TVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLL 275

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   G  PD  +FN         I GLCK      A +L+  M+ +G TP+  TY  L
Sbjct: 276 EEMLLMGCIPDVNTFNDA-------IHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVL 328

Query: 304 IEGIASVDKAAES 316
           + G+  + K  E+
Sbjct: 329 MHGLCRMGKVDEA 341


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 175/312 (56%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   D  +YG+ ++G+CK G  + A  +L +     + P  V YNT+IDG C   ++  A
Sbjct: 293 GFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDA 352

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    E V + I P   TYN LI    +  K+ +A D+  +M  K I+PD  T++IL++G
Sbjct: 353 FDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDG 412

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ GN K+A ++   M+ + I+P ++TY+SL+      N + +A+ +F     +G+  +
Sbjct: 413 FCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTAN 472

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +I+G C    ++ A  L KEM   ++ PD +TY++L+ G C+ G++  A  L+D
Sbjct: 473 VQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVD 532

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  RG +PD I       TYN+++  LCK    D A  LL ++  +GI PD NTY  L+
Sbjct: 533 EMHYRGQQPDII-------TYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILV 585

Query: 305 EGIASVDKAAES 316
           +G+    K  ++
Sbjct: 586 KGLCQSGKLEDA 597



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 164/298 (55%), Gaps = 7/298 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+ + PD +TY + +SG C  G+L++A  +  +M    ++P   T++ L+DG+C  GN++
Sbjct: 361 SKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIK 420

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A +    M+KQ I P   TY+ L+    +  ++ +A+ +   M  +G+  +  +YNI+I
Sbjct: 421 EAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMI 480

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           NG+C+     +A  L  EM HK I P ++TY+SLI  L K  R+  A +L +    +G  
Sbjct: 481 NGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQ 540

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PDI+ +N+++D  C   ++++A +LL ++    + PD  TY  L+ G C+ GK+E+AR++
Sbjct: 541 PDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKV 600

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + +  +G       +N     Y  +IQG C     D A  LL +M   G  PD  TY
Sbjct: 601 FEDLLVKG-------YNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTY 651



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 160/293 (54%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ + PD YT+   V G CK+G ++EA  +L  M +  + P  VTY++L+DGYC    
Sbjct: 394 MTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  + M  +G+     +YN++I+     + + EA  + KEM  K I PD ITY+ 
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L DEM ++G QP ++TY S++  L K++ + +A  L      +G
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  L+ G C +G +E A  + +++     + D   Y  ++ G C +G  +EA 
Sbjct: 574 IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEAL 633

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            LL +M+  G  PD         TY  +I  L +  E D+AE+LLREM+ +G+
Sbjct: 634 ALLSKMEENGCIPD-------AKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 146/274 (53%), Gaps = 7/274 (2%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
           ++ +NG  P  +T  T I G+C KG +  A  F D+++  G      +Y  LI+ L    
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           +   A ++L+    K + PD + YN +I+G C+  +   AF L+ E + K I P + TY 
Sbjct: 313 ETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           +LI       ++ +A  LF    +K ++PD+  F+ L+DG C +GNI+ A ++L  M + 
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ 432

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + PD VTY++LM G C   +V +A  + + M  RG+  +  S       YN +I G CK
Sbjct: 433 SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQS-------YNIMINGFCK 485

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            +  D A +L +EM  K I PD  TY SLI+G+ 
Sbjct: 486 IKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLC 519



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 57/359 (15%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS- 66
           P    +G  +  + K         + ++M+  G+    +  N LI+ +C  G +  AFS 
Sbjct: 108 PPDIEFGKILGSLVKSKHYHTVLSLSQKMEFKGIKLNFLNCNILINSFCQLGLIPFAFSV 167

Query: 67  ---------------------------------------FRDEMVKQGIMPTASTYNLLI 87
                                                  F  + ++  +     ++ +LI
Sbjct: 168 LTRGVYWIEILKDCFDRKNLEDFKRLCWIVLILWDFKRLFLKDFLQSRLFNVLHSFKILI 227

Query: 88  --HELLMERKM------VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             H+  +++K       +  +    ++ + G  PD+IT    I G+C  G   +A   HD
Sbjct: 228 EYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHD 287

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           ++I  G     ++Y +LI  L K      A +L      K + PD+VM+N +IDG C + 
Sbjct: 288 KVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDK 347

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
           ++  AF L  E    ++ PD  TYN L+ G C  GK+++A  L ++M  + I PD     
Sbjct: 348 HVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPD----- 402

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA--AES 316
               T++ L+ G CK+     A+ +L  M+ + I PD  TY SL++G   V++   AES
Sbjct: 403 --VYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAES 459



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 96/182 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD  TY S + G+CK GR+  A  ++++M   G  P  +TYN+++D  C K +
Sbjct: 499 MHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHH 558

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   ++  QGI P  +TY +L+  L    K+ +A  + +++  KG   D   Y +
Sbjct: 559 VDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTV 618

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+C  G   +A +L  +M   G  P   TY  +I  L +++    A++L    + +G
Sbjct: 619 MIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRG 678

Query: 181 ML 182
           +L
Sbjct: 679 LL 680



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 122/301 (40%), Gaps = 55/301 (18%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A S    +++Q   P    +  ++  L+  +       + ++M  KGI  + +  NILIN
Sbjct: 94  AVSLFYRLLRQNPTPPDIEFGKILGSLVKSKHYHTVLSLSQKMEFKGIKLNFLNCNILIN 153

Query: 124 GYCRCGNAKKAFS-----------LHDEMIHKGIQP-TMLTYTSLIF------------- 158
            +C+ G    AFS           L D    K ++    L +  LI              
Sbjct: 154 SFCQLGLIPFAFSVLTRGVYWIEILKDCFDRKNLEDFKRLCWIVLILWDFKRLFLKDFLQ 213

Query: 159 -----VLSKQNRMIEADQLF------------------ENFLAKGMLPDIVMFNALIDGH 195
                VL     +IE  + F                     L  G  PD +     I G 
Sbjct: 214 SRLFNVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIKGF 273

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C  G I +A     ++  M  H D+V+Y TL++G C+ G+ + A  LL +   + ++PD 
Sbjct: 274 CLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDV 333

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           +        YN +I G+CK++  + A +L  E VSK I PD  TY +LI G   V K  +
Sbjct: 334 V-------MYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKD 386

Query: 316 S 316
           +
Sbjct: 387 A 387


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 178/358 (49%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QP   TYG+ V GMCK+G    A  +L +M+E + ++P  V Y+ +ID  C  G
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDG 269

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++GI P   TYN +I       +  +A+ +L+EM E+ I PD +TYN
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P  +TY+S+I    KQNR+  A+ +F     K
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+++ FN LIDG+C    I+    LL EM    +  D  TYNTL+HG    G +  A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 240 RRLLDQMKRRGIKPDHIS------------------------------------FN---P 260
             LL +M   G+ PD ++                                    FN   P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 161/317 (50%), Gaps = 18/317 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD +TY S + G C  GR  +A ++L++M E  + P  VTYN LI+ +  +G 
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TY+ +I     + ++  A+ M   M  KG  P+ IT+N 
Sbjct: 341 FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNT 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM   G+     TY +LI        +  A  L +  ++ G
Sbjct: 401 LIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  + L+DG C NG ++ A  + K M + K           V PD  TYN L+ G
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L ++M  RGI PD I       TY+++I GLCK    D A ++   M 
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTI-------TYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 290 SKGITPDDNTYFSLIEG 306
           SK  +P+  T+ +LI G
Sbjct: 574 SKSFSPNVVTFTTLING 590



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P  +T+NTLIDGYC    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM + G++   +TYN LIH   +   +  A D+L+EM   G+ PD +T + 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P + TY  LI  L  + + +EA
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      P+ VT+ TL++G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  + I       TY  LI G  K    + A ++ +EM+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAI-------TYITLICGFRKVGNINGALDIFQEMI 643

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G+ S
Sbjct: 644 SSGVYPDTITIRNMLTGLWS 663



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 166/309 (53%), Gaps = 12/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y++   +   C   +L  A     ++ + GL P  VT+NTL+ G C +  
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M +    P   T+  L++ L  E ++VEA  +L  M E G+ P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++G C+ G+   A +L    +E+ H  I P ++ Y+++I  L K  R  +A  LF    
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N++I G C++G    A  LL+EM   K+ PD VTYN L++   ++GK  
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFF 342

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TY+++I G CK    D AE +   M +KG +P+ 
Sbjct: 343 EAEELYDEMLPRGIIPNTI-------TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNL 395

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 396 ITFNTLIDG 404



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  D+ TY + + G    G L  A  +L++M  +GL P  VT +TL+DG C+ G 
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  + D M  K   P ++T+T+LI    K  R+ + 
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ + + +  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 230 RCRQGKVEEARRLLDQMK 247
              + +++ A  +L++++
Sbjct: 661 LWSKEELKRAVAMLEKLQ 678



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 149/292 (51%), Gaps = 8/292 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ V +  L+         ++  S   +M ++ I     ++ +
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G+ PD +T+N L++G C      +A +L  +M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++T+T+L+  L ++ R++EA  L +  +  G+ P  + +  ++DG C  G+   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           +LL++M+ +  + P+ V Y+ ++   C+ G+  +A+ L  +M+ +GI PD         T
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD-------LFT 292

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN++I G C +     AE+LL+EM+ + I+PD  TY +LI       K  E+
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 8/267 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL-MERKMVEADDMLKEMGEK 109
           L  G+     LE A     +M++   +P+   +  L+  ++ MER  +    + ++M  K
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDL-VISLYQKMERK 108

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            I  D  ++ ILI  +C C     A S   ++   G+ P ++T+ +L+  L  ++R+ EA
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEA 168

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             LF         P++V F  L++G C  G I  A +LL  M    + P ++TY T++ G
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C++G    A  LL +M+    +  HI   P  + Y+A+I  LCK+     A+ L  EM 
Sbjct: 229 MCKKGDTVSALNLLRKME----EVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            KGI PD  TY S+I G  S  + +++
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDA 309


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 178/358 (49%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QP   TYG+ V GMCK+G    A  +L +M+E + ++P  V Y+ +ID  C  G
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDG 269

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++GI P   TYN +I       +  +A+ +L+EM E+ I PD +TYN
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P  +TY+S+I    KQNR+  A+ +F     K
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+++ FN LIDG+C    I+    LL EM    +  D  TYNTL+HG    G +  A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 240 RRLLDQMKRRGIKPDHIS------------------------------------FN---P 260
             LL +M   G+ PD ++                                    FN   P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 161/317 (50%), Gaps = 18/317 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD +TY S + G C  GR  +A ++L++M E  + P  VTYN LI+ +  +G 
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TY+ +I     + ++  A+ M   M  KG  P+ IT+N 
Sbjct: 341 FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNT 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM   G+     TY +LI        +  A  L +  ++ G
Sbjct: 401 LIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  + L+DG C NG ++ A  + K M + K           V PD  TYN L+ G
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L ++M  RGI PD I       TY+++I GLCK    D A ++   M 
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTI-------TYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 290 SKGITPDDNTYFSLIEG 306
           SK  +P+  T+ +LI G
Sbjct: 574 SKSFSPNVVTFTTLING 590



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P  +T+NTLIDGYC    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM + G++   +TYN LIH   +   +  A D+L+EM   G+ PD +T + 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P + TY  LI  L  + + +EA
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      P+ VT+ TL++G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  + I       TY  LI G  K    + A ++ +EM+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAI-------TYITLICGFRKVGNINGALDIFQEMI 643

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G+ S
Sbjct: 644 SSGVYPDTITIRNMLTGLWS 663



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 12/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y++   +   C   +L  A     ++ + GL P  VT+ TL+ G C +  
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  +M +    P   T+  L++ L  E ++VEA  +L  M E G+ P  ITY  
Sbjct: 165 VSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++G C+ G+   A +L    +E+ H  I P ++ Y+++I  L K  R  +A  LF    
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N++I G C++G    A  LL+EM   K+ PD VTYN L++   ++GK  
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFF 342

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TY+++I G CK    D AE +   M +KG +P+ 
Sbjct: 343 EAEELYDEMLPRGIIPNTI-------TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNL 395

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 396 ITFNTLIDG 404



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  D+ TY + + G    G L  A  +L++M  +GL P  VT +TL+DG C+ G 
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  + D M  K   P ++T+T+LI    K  R+ + 
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ + + +  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 230 RCRQGKVEEARRLLDQMK 247
              + +++ A  +L++++
Sbjct: 661 LWSKEELKRAVAMLEKLQ 678



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 147/292 (50%), Gaps = 8/292 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ V +  L+         ++  S   +M ++ I     ++N+
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G+ PD +T+  L++G C      +A     +M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++T+T+L+  L ++ R++EA  L +  +  G+ P  + +  ++DG C  G+   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           +LL++M+ +  + P+ V Y+ ++   C+ G+  +A+ L  +M+ +GI PD         T
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD-------LFT 292

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN++I G C +     AE+LL+EM+ + I+PD  TY +LI       K  E+
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 133/267 (49%), Gaps = 8/267 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL-MERKMVEADDMLKEMGEK 109
           L  G+     LE A     +M++   +P+   +  L+  ++ MER  +    + ++M  K
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDL-VISLYQKMERK 108

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            I  D  ++NILI  +C C     A S   ++   G+ P ++T+T+L+  L  ++R+ EA
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEA 168

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
              F         P++V F  L++G C  G I  A +LL  M    + P ++TY T++ G
Sbjct: 169 LDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C++G    A  LL +M+    +  HI   P  + Y+A+I  LCK+     A+ L  EM 
Sbjct: 229 MCKKGDTVSALNLLRKME----EVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            KGI PD  TY S+I G  S  + +++
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDA 309


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 178/358 (49%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QP   TYG+ V GMCK+G    A  +L +M+E + ++P  V Y+ +ID  C  G
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDG 269

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++GI P   TYN +I       +  +A+ +L+EM E+ I PD +TYN
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P  +TY+S+I    KQNR+  A+ +F     K
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+++ FN LIDG+C    I+    LL EM    +  D  TYNTL+HG    G +  A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 240 RRLLDQMKRRGIKPDHIS------------------------------------FN---P 260
             LL +M   G+ PD ++                                    FN   P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 161/317 (50%), Gaps = 18/317 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD +TY S + G C  GR  +A ++L++M E  + P  VTYN LI+ +  +G 
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TY+ +I     + ++  A+ M   M  KG  P+ IT+N 
Sbjct: 341 FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNT 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM   G+     TY +LI        +  A  L +  ++ G
Sbjct: 401 LIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  + L+DG C NG ++ A  + K M + K           V PD  TYN L+ G
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L ++M  RGI PD I       TY+++I GLCK    D A ++   M 
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTI-------TYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 290 SKGITPDDNTYFSLIEG 306
           SK  +P+  T+ +LI G
Sbjct: 574 SKSFSPNVVTFTTLING 590



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P  +T+NTLIDGYC    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM + G++   +TYN LIH   +   +  A D+L+EM   G+ PD +T + 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P + TY  LI  L  + + +EA
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      P+ VT+ TL++G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  + I       TY  LI G  K    + A ++ +EM+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAI-------TYITLICGFRKVGNINGALDIFQEMI 643

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G+ S
Sbjct: 644 SSGVYPDTITIRNMLTGLWS 663



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 166/309 (53%), Gaps = 12/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y++   +   C   +L  A     ++ + GL P  VT+NTL+ G C +  
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M +    P   T+  L++ L  E ++VEA  +L  M E G+ P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++G C+ G+   A +L    +E+ H  I P ++ Y+++I  L K  R  +A  LF    
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N++I G C++G    A  LL+EM   K+ PD VTYN L++   ++GK  
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFF 342

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TY+++I G CK    D AE +   M +KG +P+ 
Sbjct: 343 EAEELYDEMLPRGIIPNTI-------TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNL 395

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 396 ITFNTLIDG 404



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  D+ TY + + G    G L  A  +L++M  +GL P  VT +TL+DG C+ G 
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  + D M  K   P ++T+T+LI    K  R+ + 
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ + + +  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 230 RCRQGKVEEARRLLDQMK 247
              + +++ A  +L++++
Sbjct: 661 LWSKEELKRAVAMLEKLQ 678



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 149/292 (51%), Gaps = 8/292 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ V +  L+         ++  S   +M ++ I     ++ +
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G+ PD +T+N L++G C      +A +L  +M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++T+T+L+  L ++ R++EA  L +  +  G+ P  + +  ++DG C  G+   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           +LL++M+ +  + P+ V Y+ ++   C+ G+  +A+ L  +M+ +GI PD         T
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD-------LFT 292

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN++I G C +     AE+LL+EM+ + I+PD  TY +LI       K  E+
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 8/267 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL-MERKMVEADDMLKEMGEK 109
           L  G+     LE A     +M++   +P+   +  L+  ++ MER  +    + ++M  K
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDL-VISLYQKMERK 108

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            I  D  ++ ILI  +C C     A S   ++   G+ P ++T+ +L+  L  ++R+ EA
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEA 168

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             LF         P++V F  L++G C  G I  A +LL  M    + P ++TY T++ G
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C++G    A  LL +M+    +  HI   P  + Y+A+I  LCK+     A+ L  EM 
Sbjct: 229 MCKKGDTVSALNLLRKME----EVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            KGI PD  TY S+I G  S  + +++
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDA 309


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 173/310 (55%), Gaps = 11/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK G    A R+L  M++    P  V ++TLID  C    
Sbjct: 166 MIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ 225

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   EM+ +GI P   TYN LIH L  L E K V    ++ EM +  I+PD  T 
Sbjct: 226 VTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT--LMNEMVDSKIMPDVFTL 283

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++  C+ G   +A  + D MIH+G++P ++TY +L+     +N +  A ++F+  + 
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH 343

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           K  + +++ +N LI+G+C   ++++A  L +EM R ++ P+ VTYNTL+HG C  G++++
Sbjct: 344 KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQD 403

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L  +M  RG  PD +       TY  L   LCKN+  D A  LL+ +      PD  
Sbjct: 404 AISLFHEMVARGQIPDLV-------TYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQ 456

Query: 299 TYFSLIEGIA 308
            Y ++++G+ 
Sbjct: 457 IYTTILDGMC 466



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 172/318 (54%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+  TY S + G+CK    +  + ++ +M ++ ++P   T NT++D  C +G 
Sbjct: 236 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGM 295

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M+ +G+ P   TYN L+    +  ++  A  +   M  K  V + I+YN 
Sbjct: 296 VAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNT 355

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+  +  KA  L +EM  + + P  +TY +LI  L    R+ +A  LF   +A+G
Sbjct: 356 LINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARG 415

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  L D  C N ++++A +LLK ++     PD   Y T++ G CR G++E+AR
Sbjct: 416 QIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDAR 475

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   +  +G++P+         TYN +I GLCK  +G LAE  +L  EM   G +P+D 
Sbjct: 476 DLFSNLSSKGLQPN-------VWTYNIMIHGLCK--QGLLAEASKLFSEMNKNGCSPNDC 526

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  +  G    ++A  +
Sbjct: 527 TYNLITRGFLRNNEALRT 544



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 155/316 (49%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++ +C   R++ A   L ++ + G  P A T+ TLI G C +G 
Sbjct: 96  MDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGK 155

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+ +G  P   TY  LI+ L        A  +L+ M +    P+ + ++ 
Sbjct: 156 IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFST 215

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+     +AF++  EMI KGI P ++TY SLI  L K         L    +   
Sbjct: 216 LIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSK 275

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+   N ++D  C  G +  A  ++  M    V P+ VTYN LM G C + +V+ A 
Sbjct: 276 IMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAV 335

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +    + IS       YN LI G CK Q  D A  L  EM  + +TP+  TY
Sbjct: 336 KVFDTMVHKDCVANVIS-------YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTY 388

Query: 301 FSLIEGIASVDKAAES 316
            +LI G+  V +  ++
Sbjct: 389 NTLIHGLCHVGRLQDA 404



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 159/309 (51%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K         +  QM   G+ P   T   +I+  C+   ++ AFS 
Sbjct: 68  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P A+T+  LI  L +E K+ EA  +  +M  +G  P+ +TY  LING C+
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M     QP ++ +++LI  L K  ++ EA  +F   + KG+ P+IV 
Sbjct: 188 VGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVT 247

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI G C     +   +L+ EM   K+ PD  T NT++   C++G V EA  ++D M 
Sbjct: 248 YNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMI 307

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
            RG++P+ +       TYNAL+ G C   E D+A ++   MV K    +  +Y +LI G 
Sbjct: 308 HRGVEPNVV-------TYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGY 360

Query: 307 --IASVDKA 313
             I SVDKA
Sbjct: 361 CKIQSVDKA 369



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 129/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+P+  TY + + G C    ++ A ++ + M     V   ++YNTLI+GYC   +
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQS 365

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM +Q + P   TYN LIH L    ++ +A  +  EM  +G +PD +TY  
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +  C+  +  KA +L   +      P +  YT+++  + +   + +A  LF N  +KG
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +N +I G C  G +  A  L  EM++    P++ TYN +  G  R  +     
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545

Query: 241 RLLDQMKRRGIKPD 254
            LL++M  RG   D
Sbjct: 546 ELLEEMLARGFSVD 559



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 90/192 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P++ TY + + G+C  GRL++A  +  +M   G +P  VTY TL D  C   +
Sbjct: 376 MSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRH 435

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +    +      P    Y  ++  +    ++ +A D+   +  KG+ P+  TYNI
Sbjct: 436 LDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNI 495

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G   +A  L  EM   G  P   TY  +     + N  +   +L E  LA+G
Sbjct: 496 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG 555

Query: 181 MLPDIVMFNALI 192
              D+     L+
Sbjct: 556 FSVDVSTTTLLV 567



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  PD  TY +    +CK   L++A  +L+ ++ +   P    Y T++DG C  G 
Sbjct: 411 MVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGE 470

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P   TYN++IH L  +  + EA  +  EM + G  P+  TYN+
Sbjct: 471 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 530

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +  G+ R   A +   L +EM+ +G    + T T L+ +LS
Sbjct: 531 ITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLS 571



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 7/186 (3%)

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A S  + M+HK   P+ + +  L+  ++K         L     + G+ PD+     +I
Sbjct: 53  EALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVI 112

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +  C    ++ AFS L ++ ++   PD  T+ TL+ G C +GK+ EA  L D+M   G  
Sbjct: 113 NSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG-- 170

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
                F P  +TY  LI GLCK      A  LLR M      P+   + +LI+ +    +
Sbjct: 171 -----FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ 225

Query: 313 AAESSN 318
             E+ N
Sbjct: 226 VTEAFN 231


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 178/358 (49%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QP   TYG+ V GMCK+G    A  +L +M+E + ++P  V Y+ +ID  C  G
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDG 269

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++GI P   TYN +I       +  +A+ +L+EM E+ I PD +TYN
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P  +TY+S+I    KQNR+  A+ +F     K
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+++ FN LIDG+C    I+    LL EM    +  D  TYNTL+HG    G +  A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 240 RRLLDQMKRRGIKPDHIS------------------------------------FN---P 260
             LL +M   G+ PD ++                                    FN   P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 161/317 (50%), Gaps = 18/317 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD +TY S + G C  GR  +A ++L++M E  + P  VTYN LI+ +  +G 
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TY+ +I     + ++  A+ M   M  KG  P+ IT+N 
Sbjct: 341 FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNT 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM   G+     TY +LI        +  A  L +  ++ G
Sbjct: 401 LIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  + L+DG C NG ++ A  + K M + K           V PD  TYN L+ G
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L ++M  RGI PD I       TY+++I GLCK    D A ++   M 
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTI-------TYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 290 SKGITPDDNTYFSLIEG 306
           SK  +P+  T+ +LI G
Sbjct: 574 SKSFSPNVVTFTTLING 590



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P  +T+NTLIDGYC    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM + G++   +TYN LIH   +   +  A D+L+EM   G+ PD +T + 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P + TY  LI  L  + + +EA
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      P+ VT+ TL++G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  + I       TY  LI G  K    + A ++ +EM+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAI-------TYITLICGFRKVGNINGALDIFQEMI 643

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G+ S
Sbjct: 644 SSGVYPDTITIRNMLTGLWS 663



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 160/307 (52%), Gaps = 8/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  T+ + + G+C E R+ EA  +  QM E    P  VT+ TL++G C +G +  A
Sbjct: 144 GLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEA 203

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILIN 123
            +  D M++ G+ PT  TY  ++  +  +   V A ++L++M E   I+P+ + Y+ +I+
Sbjct: 204 VALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             C+ G    A +L  EM  KGI P + TY S+I       R  +A+QL +  L + + P
Sbjct: 264 SLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISP 323

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +NALI+     G    A  L  EM    + P+ +TY++++ G C+Q +++ A  + 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M  +G  P+ I       T+N LI G C  +  D   ELL EM   G+  D  TY +L
Sbjct: 384 YLMATKGCSPNLI-------TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL 436

Query: 304 IEGIASV 310
           I G   V
Sbjct: 437 IHGFYLV 443



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 165/309 (53%), Gaps = 12/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y++   +   C   +L  A     ++ + GL P  VT+ TL+ G C +  
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M +    P   T+  L++ L  E ++VEA  +L  M E G+ P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++G C+ G+   A +L    +E+ H  I P ++ Y+++I  L K  R  +A  LF    
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N++I G C++G    A  LL+EM   K+ PD VTYN L++   ++GK  
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFF 342

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TY+++I G CK    D AE +   M +KG +P+ 
Sbjct: 343 EAEELYDEMLPRGIIPNTI-------TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNL 395

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 396 ITFNTLIDG 404



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  D+ TY + + G    G L  A  +L++M  +GL P  VT +TL+DG C+ G 
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  + D M  K   P ++T+T+LI    K  R+ + 
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ + + +  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 230 RCRQGKVEEARRLLDQMK 247
              + +++ A  +L++++
Sbjct: 661 LWSKEELKRAVAMLEKLQ 678



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 149/292 (51%), Gaps = 8/292 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ V +  L+         ++  S   +M ++ I     ++N+
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G+ PD +T+  L++G C      +A +L  +M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++T+T+L+  L ++ R++EA  L +  +  G+ P  + +  ++DG C  G+   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           +LL++M+ +  + P+ V Y+ ++   C+ G+  +A+ L  +M+ +GI PD         T
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD-------LFT 292

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN++I G C +     AE+LL+EM+ + I+PD  TY +LI       K  E+
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 134/267 (50%), Gaps = 8/267 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL-MERKMVEADDMLKEMGEK 109
           L  G+     LE A     +M++   +P+   +  L+  ++ MER  +    + ++M  K
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDL-VISLYQKMERK 108

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            I  D  ++NILI  +C C     A S   ++   G+ P ++T+T+L+  L  ++R+ EA
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEA 168

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             LF         P++V F  L++G C  G I  A +LL  M    + P ++TY T++ G
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C++G    A  LL +M+    +  HI   P  + Y+A+I  LCK+     A+ L  EM 
Sbjct: 229 MCKKGDTVSALNLLRKME----EVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            KGI PD  TY S+I G  S  + +++
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDA 309


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+PD  TY   +  +CK GR  EA ++ + M + GL P   TY TL+ GY  KG 
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++LI     + K+ +A  +  +M ++G+ P+++TY  
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G  + A    ++MI +G+ P  + Y SLI  L   N+   A++L    L +G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + FN++ID HC  G +  +  L + M R+ V P+ +TYNTL++G C  GK++EA 
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAM 531

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KP+ +       TY+ LI G CK    + A  L +EM S G++PD  TY
Sbjct: 532 KLLSGMVSVGLKPNTV-------TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 585 NIILQGLFQTRRTAAA 600



 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 179/315 (56%), Gaps = 10/315 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M   G  P+ ++Y   + G+C E R +EA  +L  M ++   G  P  V+Y T+I+G+  
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G+ + A+S   EM+ +GI+P   TYN +I  L   + M +A ++L  M + G++PD +T
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN +++GYC  G  K+A     +M   G++P ++TY+ L+  L K  R +EA ++F++  
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ P+I  +  L+ G+ T G +     LL  M R  +HPD   ++ L+    +QGKV+
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVD 388

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  +  +M+++G+       NP  +TY A+I  LCK+   + A     +M+ +G++P +
Sbjct: 389 QAMLVFSKMRQQGL-------NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 298 NTYFSLIEGIASVDK 312
             Y SLI G+ + +K
Sbjct: 442 IVYNSLIHGLCTCNK 456



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD  TY S + G C  G+ +EA   L++M+ +G+ P  VTY+ L+D  C  G 
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M K+G+ P  +TY  L+     +  +VE   +L  M   GI PD   ++I
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y + G   +A  +  +M  +G+ P  +TY ++I +L K  R+ +A   FE  + +G
Sbjct: 377 LICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  +++N+LI G CT    ERA  L+ EM    +  + + +N+++   C++G+V E+ 
Sbjct: 437 LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESE 496

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L + M R G+KP+ I       TYN LI G C   + D A +LL  MVS G+ P+  TY
Sbjct: 497 KLFELMVRIGVKPNVI-------TYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 301 FSLIEGIASVDKAAES 316
            +LI G   + +  ++
Sbjct: 550 STLINGYCKISRMEDA 565



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 167/312 (53%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD  +Y + ++G  KEG  ++A     +M + G++P  VTYN++I   C    ++ A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               + MVK G+MP   TYN ++H      +  EA   LK+M   G+ PD +TY++L++ 
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +A  + D M  +G++P + TY +L+   + +  ++E   L +  +  G+ PD
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             +F+ LI  +   G +++A  +  +M +  ++P+ VTY  ++   C+ G+VE+A    +
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G+ P +I        YN+LI GLC   + + AEEL+ EM+ +GI  +   + S+I
Sbjct: 431 QMIDEGLSPGNI-------VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 305 EGIASVDKAAES 316
           +      +  ES
Sbjct: 484 DSHCKEGRVIES 495



 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 166/318 (52%), Gaps = 17/318 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V PD  TYG  +   C+ GRL+     L  + + G    A+ +  L+ G C   + +  M
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
               R  M + G +P   +YN+L+  L  E +  EA ++L  M +    G  PD ++Y  
Sbjct: 143 DIVLR-RMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G++ KA+S + EM+ +GI P ++TY S+I  L K   M +A ++    +  G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N+++ G+C++G  + A   LK+M    V PD VTY+ LM   C+ G+  EAR
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           ++ D M +RG+KP+         TY  L+QG     +G L E   LL  MV  GI PD  
Sbjct: 322 KIFDSMTKRGLKPEIT-------TYGTLLQGYA--TKGALVEMHGLLDLMVRNGIHPDHY 372

Query: 299 TYFSLIEGIASVDKAAES 316
            +  LI   A   K  ++
Sbjct: 373 VFSILICAYAKQGKVDQA 390



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 171/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD Y +   +    K+G++++A  +  +M++ GL P AVTY  +I   C  G 
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ +G+ P    YN LIH L    K   A++++ EM ++GI  ++I +N 
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L + M+  G++P ++TY +LI       +M EA +L    ++ G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V ++ LI+G+C    +E A  L KEM+   V PD +TYN ++ G  +  +   A+
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++   G +   I  +    TYN ++ GLCKN+  D A ++ + +    +  +  T+
Sbjct: 602 ELYVRITESGTQ---IELS----TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+ +  V +  E+ +
Sbjct: 655 NIMIDALLKVGRNDEAKD 672



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 158/355 (44%), Gaps = 53/355 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P++ TYG+ +  +CK GR+E+A    EQM + GL P  + YN+LI G C    
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456

Query: 61  LEMAFSFRDEM-----------------------------------VKQGIMPTASTYNL 85
            E A     EM                                   V+ G+ P   TYN 
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+   +  KM EA  +L  M   G+ P+++TY+ LINGYC+    + A  L  EM   G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + + +  M +  +  T+N ++    + G+ +EA+ L       G+ P++ ++    +  
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR--LMAE 694

Query: 266 NALIQGL---------------CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           N + QGL               C    G L   ++RE++ +G      TY S+I+
Sbjct: 695 NIIGQGLLEELDQLFLSMEDNGCTVDSGML-NFIVRELLQRGEITRAGTYLSMID 748



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  TY + ++G C  G+++EA ++L  M   GL P  VTY+TLI+GYC    +E A
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + E G   +  TYNI+++G
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  +   +    ++    T+  +I  L K  R  EA  LF  F + G++P+
Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  + +     G +E    L   M+      D    N ++    ++G++  A   L 
Sbjct: 686 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745

Query: 245 QMKRR 249
            +  +
Sbjct: 746 MIDEK 750



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 11/214 (5%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + PD  TY ILI   CR G     F+    +I KG +   + +T L+  L    R 
Sbjct: 79  GADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRT 138

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DR-MKVHPDEVT 222
            +A D +       G +P++  +N L+ G C     + A  LL  M  DR     PD V+
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y T+++G  ++G  ++A     +M  RGI PD +       TYN++I  LCK Q  D A 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV-------TYNSIIAALCKAQAMDKAM 251

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E+L  MV  G+ PD  TY S++ G  S  +  E+
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 49/115 (42%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++ T+   +  + K GR +EA  +      NGLVP   TY  + +    +G LE      
Sbjct: 650 EARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 709

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
             M   G    +   N ++ ELL   ++  A   L  + EK    ++ T ++ I+
Sbjct: 710 LSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 169/317 (53%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++PD  TY   +  +CK GR  EA    + M   G+ P    Y  L+ GY  KG 
Sbjct: 257 MSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGA 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    SF D MV  G+ P    +N++      +  + EA  +  +M ++G+ PD +++  
Sbjct: 317 LSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGA 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++MI++G+ P +  ++SL++ L    +  +A++LF   L +G
Sbjct: 377 LIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V FN L+   C  G +  A  L+  M R+ V P+ ++YNTL+ G C  G+++EA 
Sbjct: 437 ICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAA 496

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD M   G+KP+         TY  L++G CK +  D A  L REM+ KG+TP   TY
Sbjct: 497 KLLDVMVSNGLKPNE-------FTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATY 549

Query: 301 FSLIEGIASVDKAAESS 317
            +++ G+    + +E++
Sbjct: 550 NTILHGLFQTGRFSEAN 566



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 165/309 (53%), Gaps = 8/309 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASR-MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           G + +       + G+C   R++EA+  +L +M E G  P  V YNT+I+G+  +G +E 
Sbjct: 120 GWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEK 179

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A++   EM+ QGI P   TY  +I  L   + +  A  + ++M ++G+ PD+ TYN LI+
Sbjct: 180 AYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIH 239

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY   G  K+   + +EM   G++P  +TY  L+  L K  R  EA   F++   KG+ P
Sbjct: 240 GYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKP 299

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+ ++  L+ G+ T G +    S L  M    V P+   +N +     ++  +EEA  + 
Sbjct: 300 DVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIF 359

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M+++G+ PD +SF        ALI  LCK    D A     +M+++G+TP+   + SL
Sbjct: 360 NKMRQQGLSPDVVSF-------GALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSL 412

Query: 304 IEGIASVDK 312
           + G+ +V K
Sbjct: 413 VYGLCTVGK 421



 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 11/306 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+ + + S V G+C  G+ E+A  +  ++ + G+   AV +NTL+   CN+G 
Sbjct: 397 MINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGR 456

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M++ G+ P   +YN L+    +  ++ EA  +L  M   G+ P+  TY I
Sbjct: 457 VMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTI 516

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC+      A+SL  EM+ KG+ P + TY +++  L +  R  EA++L+ N +   
Sbjct: 517 LLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR 576

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              DI  +N +++G C N  ++ AF + + +       D VT+N ++    + G+ E+A 
Sbjct: 577 TKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAM 636

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   +   G+ PD +++   RL    LI      +EG L E   L   M   G  P+ +
Sbjct: 637 DLFATISAYGLVPDVVTY---RLIAENLI------EEGSLGEFDGLFSAMEKSGTAPNSH 687

Query: 299 TYFSLI 304
              +L+
Sbjct: 688 MLNALV 693



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 153/307 (49%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD  ++G+ +  +CK GR+++A     QM   G+ P    +++L+ G C  G 
Sbjct: 362 MRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGK 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     E++ QGI   A  +N L+  L  E +++EA  ++  M   G+ P+ I+YN 
Sbjct: 422 WEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNT 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+C  G   +A  L D M+  G++P   TYT L+    K  R+ +A  LF   L KG
Sbjct: 482 LVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKG 541

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N ++ G    G    A  L   M   +   D  TYN +++G C+   V+EA 
Sbjct: 542 VTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAF 601

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  ++  +  + D +       T+N +I  L K    + A +L   + + G+ PD  TY
Sbjct: 602 KMFRRLCSKDPQLDSV-------TFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTY 654

Query: 301 FSLIEGI 307
             + E +
Sbjct: 655 RLIAENL 661



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 151/300 (50%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+   +        K+  +EEA  +  +M++ GL P  V++  LID  C  G 
Sbjct: 327 MVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGR 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G+ P    ++ L++ L    K  +A+++  E+ ++GI  D++ +N 
Sbjct: 387 VDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNT 446

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   C  G   +A  L D MI  G++P +++Y +L+       R+ EA +L +  ++ G
Sbjct: 447 LMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNG 506

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +  L+ G+C    ++ A+SL +EM    V P   TYNT++HG  + G+  EA 
Sbjct: 507 LKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEAN 566

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M     K D         TYN ++ GLCKN   D A ++ R + SK    D  T+
Sbjct: 567 ELYLNMINSRTKCDI-------YTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTF 619



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 148/305 (48%), Gaps = 29/305 (9%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100
           + P A TY+ LI  +C  G LE  F+    ++K G        + L+  L   +++ EA 
Sbjct: 86  VAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEAT 145

Query: 101 D-MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
           D +L  M E G  PD + YN +ING+ R G  +KA++L  EM+ +GI P ++TYT++I  
Sbjct: 146 DILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDG 205

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K   +  A  +F+  + +G+ PD   +N LI G+ + G  +    +L+EM    + PD
Sbjct: 206 LCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPD 265

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF--------------------- 258
            +TY  L+   C+ G+  EAR   D M R+GIKPD   +                     
Sbjct: 266 CITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLD 325

Query: 259 -------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
                  +P R  +N +     K    + A  +  +M  +G++PD  ++ +LI+ +  + 
Sbjct: 326 LMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLG 385

Query: 312 KAAES 316
           +  ++
Sbjct: 386 RVDDA 390



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 119/235 (50%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  +Y + V+G C  GR++EA+++L+ M  NGL P   TY  L+ GYC    ++ A
Sbjct: 471 GVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDA 530

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +S   EM+ +G+ P  +TYN ++H L    +  EA+++   M       D  TYNI++NG
Sbjct: 531 YSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNG 590

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +AF +   +  K  Q   +T+  +I  L K  R  +A  LF    A G++PD
Sbjct: 591 LCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPD 650

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +V +  + +     G++     L   M++    P+    N L+     +G +  A
Sbjct: 651 VVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRA 705



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 30/252 (11%)

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           ER +     M +E   K + P++ TY+ILI  +CR G  +  F+    ++  G +  ++ 
Sbjct: 69  ERVVSLFTRMARECSSK-VAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIV 127

Query: 153 YTSLIFVLSKQNRMIEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            + L+  L    R+ EA D L       G  PD+V +N +I+G    G +E+A++L  EM
Sbjct: 128 ISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEM 187

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------ 259
               + P+ VTY T++ G C+   V+ A+ +  QM  RG+KPD+ ++N            
Sbjct: 188 MDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKW 247

Query: 260 ----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                           P  +TY  L+  LCKN     A      M  KGI PD   Y  L
Sbjct: 248 KEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAIL 307

Query: 304 IEGIASVDKAAE 315
           + G A+    +E
Sbjct: 308 LHGYATKGALSE 319



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+ +TY   + G CK  R+++A  +  +M   G+ P   TYNT++ G    G 
Sbjct: 502 MVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGR 561

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M+         TYN++++ L     + EA  M + +  K    DS+T+NI
Sbjct: 562 FSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNI 621

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    + G  + A  L   +   G+ P ++TY  +   L ++  + E D LF      G
Sbjct: 622 MIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSG 681

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
             P+  M NAL+      G+I RA   L ++D
Sbjct: 682 TAPNSHMLNALVRRLLHRGDISRAGVYLYKLD 713



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 71/168 (42%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D YTY   ++G+CK   ++EA +M  ++        +VT+N +I      G  E A    
Sbjct: 580 DIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLF 639

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             +   G++P   TY L+   L+ E  + E D +   M + G  P+S   N L+      
Sbjct: 640 ATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHR 699

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           G+  +A     ++  K       T + LI + S+      A  L E +
Sbjct: 700 GDISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKSLPEKY 747



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+  Q DS T+   +  + K GR E+A  +   +   GLVP  VTY  + +    +G+L 
Sbjct: 609 SKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLG 668

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                   M K G  P +   N L+  LL    +  A   L ++ EK    ++ T ++LI
Sbjct: 669 EFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLI 728

Query: 123 NGYCR 127
           + Y R
Sbjct: 729 SLYSR 733


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 169/304 (55%), Gaps = 10/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S  V PD +T+ + ++G+CKEGRL+E S + ++M   GLVP  VT+  LIDG C  G 
Sbjct: 203 MESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGK 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M+ QG+ P   TYN LI+ L     + EA  ++ EM   G+ PD IT+  
Sbjct: 263 VDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A  +   M+ +GI+   + +T LI  L +  R+ +A+++  + L+ G
Sbjct: 323 LIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +  ++D  C  GN+   F LLKEM      P  VTYN LM+G C+QG+V+ A+
Sbjct: 383 FKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAK 442

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD M   G+ P+ I       TYN L++G  K+      +    E   KG+  D  +Y
Sbjct: 443 MLLDAMLNVGVAPNDI-------TYNILLEGHSKHGSSVDVDIFNSE---KGLVKDYASY 492

Query: 301 FSLI 304
            +L+
Sbjct: 493 TALV 496



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 168/330 (50%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+ + +   + G CK G +  A  + +++ + GL PT V++NTLI G C  G +E  
Sbjct: 137 GYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M  + + P   T++ LI+ L  E ++ E   +  EM  KG+VP+ +T+ +LI+G
Sbjct: 197 FRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A      M+ +G++P ++TY +LI  L K   + EA +L     A G+ PD
Sbjct: 257 QCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + F  LIDG C  G++E A  + + M    +  D+V +  L+ G CR G+V +A R+L 
Sbjct: 317 RITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLR 376

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M   G KPD  ++                             P  +TYNAL+ GLCK  
Sbjct: 377 DMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQG 436

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   A+ LL  M++ G+ P+D TY  L+EG
Sbjct: 437 QVKNAKMLLDAMLNVGVAPNDITYNILLEG 466



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 150/280 (53%), Gaps = 7/280 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE +     ++ ++G  P    +N L+ G+C  G +  A    DE+ K+G+ PT  ++N 
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI        + E   +   M  + + PD  T++ LING C+ G   +   L DEM  KG
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKG 242

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +T+T LI    K  ++  A + F+  LA+G+ PD+V +NALI+G C  G+++ A 
Sbjct: 243 LVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 302

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+ EM    + PD +T+ TL+ G C+ G +E A  +  +M   GI+ D ++F       
Sbjct: 303 RLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAF------- 355

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
             LI GLC++     AE +LR+M+S G  PDD TY  +++
Sbjct: 356 TVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVD 395



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 99/185 (53%), Gaps = 7/185 (3%)

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           +++++ + E++  G  P    +  L+    K   +  A  +F+    +G+ P +V FN L
Sbjct: 124 ERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTL 183

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I G C  G +E  F L   M+  +V PD  T++ L++G C++G+++E   L D+M  +G+
Sbjct: 184 ISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGL 243

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            P+ +       T+  LI G CK  + DLA +  + M+++G+ PD  TY +LI G+  V 
Sbjct: 244 VPNGV-------TFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVG 296

Query: 312 KAAES 316
              E+
Sbjct: 297 DLKEA 301



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +ER+++   E+      P+   +N LMHG C+ G V  AR + D++ +RG++P  +SFN 
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFN- 181

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
                  LI G CK    +    L   M S+ + PD  T+ +LI G+    +  E S
Sbjct: 182 ------TLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGS 232


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 182/380 (47%), Gaps = 64/380 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+R + P  +TY   +SG+C    L++A+ +L+QM  NG+ P    Y TLI  Y  +  
Sbjct: 442 MKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESR 501

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
            EMA      M+  G++P    YN LI  L   +K+ EA  +L +MGEK           
Sbjct: 502 YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561

Query: 110 ------------------------GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                   GIVP+++ Y ILI G+C  GN  +A S    M+ KG
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG 621

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P +  Y+++I  LSK  +  EA  +F  FL  G++PD+ ++N+LI G C  G+IE+A 
Sbjct: 622 LIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKAS 681

Query: 206 SLLKEMDRMKVHPDEVTYNTLM--HGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---- 259
            L  EM    ++P+ V YNTL+  +G C+ G + EA +L D+M  +GI PD   +     
Sbjct: 682 QLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILID 741

Query: 260 -----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                   +   +N+LI   CK+ +   A EL  +MV K +TP+
Sbjct: 742 GCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPN 801

Query: 297 DNTYFSLIEGIASVDKAAES 316
             TY  LI+     +   E+
Sbjct: 802 IVTYTILIDAYGKAEMMEEA 821



 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD +TY   V G CK+ R +EA  + E M  +GL P   TY  LIDG+  +GN
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   +DEM+ +G+     TYN +I  +    +M +A  +  EM   GI PD+ TYN+
Sbjct: 362 IEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNL 421

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY +  +  KA  L  EM  + + P+  TY+ LI  L   + + +A+++ +  +  G
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNG 481

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++ M+  LI  +      E A  LLK M    V PD   YN L+ G CR  KVEEA+
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAK 541

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M  +GIKP+         TY A I    K+ E  +AE   ++M+S GI P++  Y
Sbjct: 542 MLLVDMGEKGIKPN-------AHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIY 594

Query: 301 FSLIEGIASVDKAAES 316
             LI+G   V    E+
Sbjct: 595 TILIKGHCDVGNTVEA 610



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 167/339 (49%), Gaps = 44/339 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++PD++TY   + G  K   + +A  +L +MK   L P+  TY+ LI G C+  +L+ A
Sbjct: 411 GIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKA 470

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M++ G+ P    Y  LI   + E +   A ++LK M   G++PD   YN LI G
Sbjct: 471 NEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIG 530

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR    ++A  L  +M  KGI+P   TY + I + SK   +  A++ F++ L+ G++P+
Sbjct: 531 LCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPN 590

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEM--------------------------------- 211
            V++  LI GHC  GN   A S  K M                                 
Sbjct: 591 NVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFL 650

Query: 212 --DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
              +  V PD   YN+L+ G C++G +E+A +L D+M   GI       NP  + YN LI
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGI-------NPNIVVYNTLI 703

Query: 270 Q--GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G CK+     A +L  EM+SKGI+PD   Y  LI+G
Sbjct: 704 NDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDG 742



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 164/311 (52%), Gaps = 8/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + PD YTY + +   CK G + +   +L +M E    P   TYN  I G C  G ++ A 
Sbjct: 238 IVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEAL 296

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
             +  M+++G+ P   TY LL+     +++  EA  + + M   G+ P+  TY  LI+G+
Sbjct: 297 EVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGF 356

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + GN ++A  + DEMI +G++  ++TY ++I  ++K   M +A  LF   L  G+ PD 
Sbjct: 357 IKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDT 416

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +N LIDG+  + ++ +A  LL EM   K+ P   TY+ L+ G C    +++A  +LDQ
Sbjct: 417 WTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQ 476

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M R G+KP+          Y  LI+   +    ++A ELL+ M++ G+ PD   Y  LI 
Sbjct: 477 MIRNGVKPN-------VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLII 529

Query: 306 GIASVDKAAES 316
           G+    K  E+
Sbjct: 530 GLCRAKKVEEA 540



 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 167/315 (53%), Gaps = 10/315 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLID--GYCNKGNLE 62
           GV PD + Y S +SG CKEG +E+AS++ ++M  NG+ P  V YNTLI+  GYC  GNL 
Sbjct: 656 GVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLT 715

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF   DEM+ +GI P    Y +LI     E  + +A  +  E  +K +   S  +N LI
Sbjct: 716 EAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS-AFNSLI 774

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           + +C+ G   +A  L D+M+ K + P ++TYT LI    K   M EA+QLF +   + ++
Sbjct: 775 DSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNII 834

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+ + + +L+  +   GN  +  SL K+M+   +  D + Y  +    C++GK  EA +L
Sbjct: 835 PNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKL 894

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L++    GIK +   F+       ALI  LCK ++     ELL EM  + ++    T  +
Sbjct: 895 LNKSLVEGIKLEDDVFD-------ALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 947

Query: 303 LIEGIASVDKAAESS 317
           L+ G        E+S
Sbjct: 948 LLLGFYKSGNEDEAS 962



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 156/306 (50%), Gaps = 10/306 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD   Y + +  + K G+ +EA  +  +  + G+VP    YN+LI G+C +G+
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +E A    DEM+  GI P    YN LI++        + EA  +  EM  KGI PD   Y
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIY 736

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            ILI+G  + GN +KA SL  E   K +  ++  + SLI    K  ++IEA +LF++ + 
Sbjct: 737 CILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVD 795

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           K + P+IV +  LID +     +E A  L  +M+   + P+ +TY +L+    + G   +
Sbjct: 796 KKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFK 855

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
              L   M+ RGI  D I+       Y  +    CK  +   A +LL + + +GI  +D+
Sbjct: 856 MISLFKDMEARGIACDAIA-------YGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDD 908

Query: 299 TYFSLI 304
            + +LI
Sbjct: 909 VFDALI 914



 Score =  130 bits (326), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 129/258 (50%), Gaps = 1/258 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ PD Y Y   + G  KEG LE+A  +  + ++   V +   +N+LID +C  G 
Sbjct: 724 MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS-VGSLSAFNSLIDSFCKHGK 782

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+MV + + P   TY +LI        M EA+ +  +M  + I+P+++TY  
Sbjct: 783 VIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTS 842

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  Y + GN  K  SL  +M  +GI    + Y  +     K+ + +EA +L    L +G
Sbjct: 843 LLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 902

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +  +F+ALI   C    I     LL EM + ++     T NTL+ G  + G  +EA 
Sbjct: 903 IKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEAS 962

Query: 241 RLLDQMKRRGIKPDHISF 258
           ++L  M+R G  P  +S 
Sbjct: 963 KVLGVMQRLGWVPTSLSL 980



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV-----------------TYNTLID 53
           ++Y      +C  G + +A  MLE++ +    P  +                  ++  ID
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFID 180

Query: 54  GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
            +   G L  A S     + +G  PT    N L+ +LL    M     +   M E  IVP
Sbjct: 181 KFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVP 240

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  TY  +I  +C+ G+  K   +  EM  K  +P + TY + I  L +   + EA ++ 
Sbjct: 241 DVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVK 299

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           +  + KG+ PD   +  L+DG C     + A  + + M    ++P+  TY  L+ G  ++
Sbjct: 300 KLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE 359

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G +EEA R+ D+M  RG+K + +       TYNA+I G+ K  E   A  L  EM+  GI
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVV-------TYNAMIGGIAKAGEMAKAMSLFNEMLMAGI 412

Query: 294 TPDDNTYFSLIEG 306
            PD  TY  LI+G
Sbjct: 413 EPDTWTYNLLIDG 425



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++R + P++ TY S +    + G   +   + + M+  G+   A+ Y  +   YC +G 
Sbjct: 828 METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGK 887

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    ++ + +GI      ++ LI  L  E+++    ++L EMG++ +   S T N 
Sbjct: 888 SLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 947

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           L+ G+ + GN  +A  +   M   G  PT L+ T  I
Sbjct: 948 LLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTDSI 984


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P+  TY S +S +C  GR  +AS++L  M E  + P  VT+N LID +  +G 
Sbjct: 210 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M+K+ I P   TYN LI+   M  ++ +A  M + M  K   PD  TYN 
Sbjct: 270 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    +    L  EM H+G+    +TYT+LI  L        A ++F+  ++ G
Sbjct: 330 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C NG +E+A  +   M + ++  D   Y T++ G C+ GKV++  
Sbjct: 390 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 449

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ +       TYN +I GLC  +    A  LL++M   G  PD  TY
Sbjct: 450 DLFCSLSLKGVKPNVV-------TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTY 502

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 503 NTLIRAHLRDGDKAASA 519



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 179/318 (56%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ T+ + + G+    +  EA  ++++M + G  P  VTY  +++G C +G+
Sbjct: 105 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++AF+  ++M    I      +N +I  L   R + +A ++ KEM  KGI P+ +TY+ 
Sbjct: 165 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 224

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L  +MI K I P ++T+ +LI    K+ + +EA++L ++ + + 
Sbjct: 225 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 284

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N+LI+G C +  +++A  + + M      PD  TYNTL+ G C+  +VE+  
Sbjct: 285 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGT 344

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RG+  D +       TY  LIQGL  + + D A+++ ++MVS G+ PD  TY
Sbjct: 345 ELFREMSHRGLVGDTV-------TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 397

Query: 301 FSLIEGIAS---VDKAAE 315
             L++G+ +   ++KA E
Sbjct: 398 SILLDGLCNNGKLEKALE 415



 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 166/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QP+  TYG  V+G+CK G ++ A  +L +M+   +    V +NT+ID  C   +
Sbjct: 140 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 199

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M EK I P+ +T+N 
Sbjct: 200 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 259

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  LHD+MI + I P + TY SLI      +R+ +A Q+FE  ++K 
Sbjct: 260 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 319

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  +N LI G C +  +E    L +EM    +  D VTY TL+ G    G  + A+
Sbjct: 320 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 379

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  QM   G+ PD        +TY+ L+ GLC N + + A E+   M    I  D   Y
Sbjct: 380 KVFKQMVSDGVPPD-------IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 432

Query: 301 FSLIEGIASVDKAAESSN 318
            ++IEG+    K  +  +
Sbjct: 433 TTMIEGMCKAGKVDDGWD 450



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 161/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P   T  S ++G C   R+ +A  +++QM E G  P  +T+ TLI G      
Sbjct: 70  MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 129

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  D MV++G  P   TY ++++ L     +  A ++L +M    I  D + +N 
Sbjct: 130 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 189

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+  +   A +L  EM  KGI+P ++TY+SLI  L    R  +A QL  + + K 
Sbjct: 190 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V FNALID     G    A  L  +M +  + PD  TYN+L++G C   ++++A+
Sbjct: 250 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAK 309

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ + M  +   PD         TYN LI+G CK++  +   EL REM  +G+  D  TY
Sbjct: 310 QMFEFMVSKDCFPDLD-------TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 362

Query: 301 FSLIEGI 307
            +LI+G+
Sbjct: 363 TTLIQGL 369



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 174/319 (54%), Gaps = 10/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEE--ASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           +KSR + P  + +   +S + K  + +   +  +L +M + G  P+ VT ++L++GYC+ 
Sbjct: 34  VKSRPL-PSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHG 92

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
             +  A +  D+MV+ G  P   T+  LIH L +  K  EA  ++  M ++G  P+ +TY
Sbjct: 93  KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 152

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            +++NG C+ G+   AF+L ++M    I+  ++ + ++I  L K   + +A  LF+    
Sbjct: 153 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 212

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG+ P++V +++LI   C+ G    A  LL +M   K++P+ VT+N L+    ++GK  E
Sbjct: 213 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 272

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A +L D M +R I PD         TYN+LI G C +   D A+++   MVSK   PD +
Sbjct: 273 AEKLHDDMIKRSIDPD-------IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLD 325

Query: 299 TYFSLIEGIASVDKAAESS 317
           TY +LI+G     +  + +
Sbjct: 326 TYNTLIKGFCKSKRVEDGT 344



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 128/247 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S ++G C   RL++A +M E M      P   TYNTLI G+C    
Sbjct: 280 MIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKR 339

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM  +G++    TY  LI  L  +     A  + K+M   G+ PD +TY+I
Sbjct: 340 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 399

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + D M    I+  +  YT++I  + K  ++ +   LF +   KG
Sbjct: 400 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 459

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N +I G C+   ++ A++LLK+M      PD  TYNTL+    R G    + 
Sbjct: 460 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 519

Query: 241 RLLDQMK 247
            L+ +M+
Sbjct: 520 ELIREMR 526



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR--MIEADQLFENFLAKGMLPDIVMFNAL 191
           A  L   M+     P++  +  L+  ++K  +  ++ +  L    +  G  P IV  ++L
Sbjct: 26  AIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSL 85

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G+C    I  A +L+ +M  M   PD +T+ TL+HG     K  EA  L+D+M +RG 
Sbjct: 86  LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC 145

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           +P+ +       TY  ++ GLCK  + DLA  LL +M +  I  D   + ++I+ +    
Sbjct: 146 QPNLV-------TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYR 198

Query: 312 KAAESSN 318
              ++ N
Sbjct: 199 HVDDALN 205



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++ D Y Y + + GMCK G++++   +   +   G+ P  VTYNT+I G C+K  
Sbjct: 420 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 479

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A++   +M + G +P + TYN LI   L +     + ++++EM     V D+ T  +
Sbjct: 480 LQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 539

Query: 121 LIN 123
           + N
Sbjct: 540 VAN 542



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+P+  TY + +SG+C +  L+EA  +L++MKE+G +P + TYNTLI  +   G+   
Sbjct: 458 KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 517

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM     +  AST  L+ + L
Sbjct: 518 SAELIREMRSCRFVGDASTIGLVANML 544


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P+  TY S +S +C  GR  +AS++L  M E  + P  VT+N LID +  +G 
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M+K+ I P   TYN LI+   M  ++ +A  M + M  K   PD  TYN 
Sbjct: 271 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    +    L  EM H+G+    +TYT+LI  L        A ++F+  ++ G
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C NG +E+A  +   M + ++  D   Y T++ G C+ GKV++  
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ +       TYN +I GLC  +    A  LL++M   G  PD  TY
Sbjct: 451 DLFCSLSLKGVKPNVV-------TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTY 503

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 504 NTLIRAHLRDGDKAASA 520



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 179/318 (56%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ T+ + + G+    +  EA  ++++M + G  P  VTY  +++G C +G+
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 165

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++AF+  ++M    I      +N +I  L   R + +A ++ KEM  KGI P+ +TY+ 
Sbjct: 166 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 225

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L  +MI K I P ++T+ +LI    K+ + +EA++L ++ + + 
Sbjct: 226 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N+LI+G C +  +++A  + + M      PD  TYNTL+ G C+  +VE+  
Sbjct: 286 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGT 345

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RG+  D +       TY  LIQGL  + + D A+++ ++MVS G+ PD  TY
Sbjct: 346 ELFREMSHRGLVGDTV-------TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 398

Query: 301 FSLIEGIAS---VDKAAE 315
             L++G+ +   ++KA E
Sbjct: 399 SILLDGLCNNGKLEKALE 416



 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 164/313 (52%), Gaps = 7/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QP+  TYG  V+G+CK G ++ A  +L +M+   +    V +NT+ID  C   +
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M EK I P+ +T+N 
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  LHD+MI + I P + TY SLI      +R+ +A Q+FE  ++K 
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  +N LI G C +  +E    L +EM    +  D VTY TL+ G    G  + A+
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  QM   G+ PD        +TY+ L+ GLC N + + A E+   M    I  D   Y
Sbjct: 381 KVFKQMVSDGVPPD-------IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 433

Query: 301 FSLIEGIASVDKA 313
            ++IEG+    K 
Sbjct: 434 TTMIEGMCKAGKV 446



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 174/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  + YTY   ++  C+  ++  A  +L +M + G  P+ VT ++L++GYC+   
Sbjct: 36  MQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+  LIH L +  K  EA  ++  M ++G  P+ +TY +
Sbjct: 96  ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   AF+L ++M    I+  ++ + ++I  L K   + +A  LF+    KG
Sbjct: 156 VVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 215

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +++LI   C+ G    A  LL +M   K++P+ VT+N L+    ++GK  EA 
Sbjct: 216 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 275

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D M +R I PD         TYN+LI G C +   D A+++   MVSK   PD +TY
Sbjct: 276 KLHDDMIKRSIDPD-------IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTY 328

Query: 301 FSLIEGIASVDKAAESS 317
            +LI+G     +  + +
Sbjct: 329 NTLIKGFCKSKRVEDGT 345



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 128/247 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S ++G C   RL++A +M E M      P   TYNTLI G+C    
Sbjct: 281 MIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKR 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM  +G++    TY  LI  L  +     A  + K+M   G+ PD +TY+I
Sbjct: 341 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + D M    I+  +  YT++I  + K  ++ +   LF +   KG
Sbjct: 401 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N +I G C+   ++ A++LLK+M      PD  TYNTL+    R G    + 
Sbjct: 461 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 520

Query: 241 RLLDQMK 247
            L+ +M+
Sbjct: 521 ELIREMR 527



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 71/309 (22%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----GIVPDSITYNILI---- 122
           MVK   +P+   +N L+  +   +K     D++  +GEK    GI  +  TYNILI    
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKF----DLVISLGEKMQRLGISHNLYTYNILINCFC 56

Query: 123 -------------------------------NGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
                                          NGYC       A +L D+M+  G +P  +
Sbjct: 57  RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 116

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           T+T+LI  L   N+  EA  L +  + +G  P++V +  +++G C  G+I+ AF+LL +M
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------------- 258
           +  K+  D V +NT++   C+   V++A  L  +M+ +GI+P+ +++             
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236

Query: 259 ---------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                          NP  +T+NALI    K  +   AE+L  +M+ + I PD  TY SL
Sbjct: 237 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296

Query: 304 IEGIASVDK 312
           I G    D+
Sbjct: 297 INGFCMHDR 305



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 7/207 (3%)

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
           +P    +N L++   +        SL ++M   GI   + TY  LI    +++++  A  
Sbjct: 7   LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L    +  G  P IV  ++L++G+C    I  A +L+ +M  M   PD +T+ TL+HG  
Sbjct: 67  LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
              K  EA  L+D+M +RG +P+ +       TY  ++ GLCK  + DLA  LL +M + 
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLV-------TYGVVVNGLCKRGDIDLAFNLLNKMEAA 179

Query: 292 GITPDDNTYFSLIEGIASVDKAAESSN 318
            I  D   + ++I+ +       ++ N
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALN 206



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++ D Y Y + + GMCK G++++   +   +   G+ P  VTYNT+I G C+K  
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A++   +M + G +P + TYN LI   L +     + ++++EM     V D+ T  +
Sbjct: 481 LQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 540

Query: 121 LIN 123
           + N
Sbjct: 541 VAN 543



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+P+  TY + +SG+C +  L+EA  +L++MKE+G +P + TYNTLI  +   G+   
Sbjct: 459 KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 518

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM     +  AST  L+ + L
Sbjct: 519 SAELIREMRSCRFVGDASTIGLVANML 545


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD  TY + + G+CK+ +++EA++ L +M   G +P   TYNT+IDGYC  G L+ A 
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEAT 335

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               + V +G +P   TY  LI+ L  E  +  A ++  E   K + PD + YN L+ G 
Sbjct: 336 ELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGL 395

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR G    A  + +EM+ +G  P + TY  +I  L K   + +A  +  + + KG LPD+
Sbjct: 396 CRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDV 455

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             FN LIDG+C    ++ A  L++ M    + PD +TYN++++G C+ GK +E     ++
Sbjct: 456 FTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEE 515

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G +P+ I       TYN LI+  CK  + + A  ++  M   G+ PD  ++ +LI 
Sbjct: 516 MILKGCRPNAI-------TYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIH 568

Query: 306 GI 307
           G 
Sbjct: 569 GF 570



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 174/314 (55%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+  + +T   ++ G+C++GRLEEA  ++E+M    + P  VTYNTL+ G C    ++ 
Sbjct: 240 RGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQE 298

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +   M+ QG +P   TYN +I        + EA ++LK+   KG VPD +TY  LIN
Sbjct: 299 AAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLIN 358

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G+ ++A  L +E   K ++P ++ Y SL+  L +Q  ++ A Q+    + +G  P
Sbjct: 359 GLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHP 418

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I+G C  GNI  A  ++ +       PD  T+NTL+ G C++ K++ A +L+
Sbjct: 419 DIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 478

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   GI PD I       TYN+++ GLCK  +     E   EM+ KG  P+  TY  L
Sbjct: 479 ERMWTYGIAPDVI-------TYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNIL 531

Query: 304 IEGIASVDKAAESS 317
           IE    +++  E+S
Sbjct: 532 IENFCKINQLEEAS 545



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 179/351 (50%), Gaps = 45/351 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +TY + + G CK G L+EA+ +L+     G VP  VTY +LI+G C +G+
Sbjct: 306 MMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGD 365

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +E   + + P    YN L+  L  +  ++ A  ++ EM E+G  PD  TYNI
Sbjct: 366 IERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNI 425

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ GN   A  + ++ I KG  P + T+ +LI    K+ ++  A QL E     G
Sbjct: 426 IINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYG 485

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N++++G C  G  +      +EM      P+ +TYN L+   C+  ++EEA 
Sbjct: 486 IAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEAS 545

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD--------------------- 279
            ++ +M + G+ PD +SF       N LI G C+N + D                     
Sbjct: 546 GVIVRMCQDGLVPDAVSF-------NTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTF 598

Query: 280 --------------LAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
                         +AE++  EM+SKG  PD  TY  L++G+   A+VD+A
Sbjct: 599 NILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRA 649



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 165/315 (52%), Gaps = 7/315 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +++ ++PD   Y S V G+C++G +  A +++ +M E G  P   TYN +I+G C  GN+
Sbjct: 377 QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNI 436

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    ++ + +G +P   T+N LI       K+  A  +++ M   GI PD ITYN +
Sbjct: 437 SDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSV 496

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +NG C+ G AK+     +EMI KG +P  +TY  LI    K N++ EA  +       G+
Sbjct: 497 LNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGL 556

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD V FN LI G C NG+++ A+ L +++D         T+N L+     +  ++ A +
Sbjct: 557 VPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEK 616

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +  +M  +G KPD         TY  L+ GLCK    D A   L EM+SKG  P   T+ 
Sbjct: 617 IFGEMISKGYKPD-------LYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFG 669

Query: 302 SLIEGIASVDKAAES 316
            ++  +A   + +E+
Sbjct: 670 RMLNLLAMNHRVSEA 684



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 170/377 (45%), Gaps = 62/377 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV PD+ T+   +   C  GR   A R+L  + E G       Y T++ G    G+
Sbjct: 132 MLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGH 191

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---------- 110
              A    DEM+ + + P  +T+N ++H L  +  ++E+  +L ++ ++G          
Sbjct: 192 GYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNI 251

Query: 111 ------------------------IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
                                   + PD +TYN L+ G C+    ++A      M+++G 
Sbjct: 252 WIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGC 311

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P   TY ++I    K   + EA +L ++ + KG +PD V + +LI+G C  G+IERA  
Sbjct: 312 IPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALE 371

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------- 259
           L  E     + PD V YN+L+ G CRQG +  A +++++M   G  PD  ++N       
Sbjct: 372 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLC 431

Query: 260 ---------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                                P   T+N LI G CK  + D A +L+  M + GI PD  
Sbjct: 432 KMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVI 491

Query: 299 TYFSLIEGIASVDKAAE 315
           TY S++ G+    KA E
Sbjct: 492 TYNSVLNGLCKAGKAKE 508



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 139/251 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  PD +T+ + + G CK  +L+ A +++E+M   G+ P  +TYN++++G C  G  + 
Sbjct: 449 KGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKE 508

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                +EM+ +G  P A TYN+LI       ++ EA  ++  M + G+VPD++++N LI+
Sbjct: 509 VNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIH 568

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+CR G+   A+ L  ++  KG   T  T+  LI   S +  M  A+++F   ++KG  P
Sbjct: 569 GFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKP 628

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+  +  L+DG C   N++RA++ L EM      P   T+  +++      +V EA  ++
Sbjct: 629 DLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAII 688

Query: 244 DQMKRRGIKPD 254
             M R G+ P+
Sbjct: 689 HIMVRMGVVPE 699



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD +TY   ++G+CK G + +A+ ++      G +P   T+NTLIDGYC +  
Sbjct: 411 MVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLK 470

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M   GI P   TYN +++ L    K  E ++  +EM  KG  P++ITYNI
Sbjct: 471 LDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNI 530

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+    ++A  +   M   G+ P  +++ +LI    +   +  A  LF+    KG
Sbjct: 531 LIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKG 590

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                  FN LI  + +  N++ A  +  EM      PD  TY  L+ G C+   V+ A 
Sbjct: 591 YSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAY 650

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M  +G       F P+  T+  ++  L  N     A  ++  MV  G+ P+    
Sbjct: 651 AHLAEMISKG-------FVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPE---- 699

Query: 301 FSLIEGIASVDK 312
             +++ I S DK
Sbjct: 700 --VVDTILSTDK 709



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 159/344 (46%), Gaps = 41/344 (11%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  Y + +  +      ++A ++  +M   G+ P A T+   +  +C  G   +A   
Sbjct: 104 PAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRL 163

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              + ++G     + Y  ++  L        A  +  EM  + + PD  T+N +++  C+
Sbjct: 164 LRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQ 223

Query: 128 CGNAKKAFSLHDEMIHKG----------------------------------IQPTMLTY 153
            G+  ++ +L  +++ +G                                  + P ++TY
Sbjct: 224 KGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTY 283

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
            +L+  L K +++ EA Q     + +G +PD   +N +IDG+C +G ++ A  LLK+   
Sbjct: 284 NTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVF 343

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
               PD VTY +L++G C +G +E A  L ++ + + +KPD +        YN+L++GLC
Sbjct: 344 KGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLV-------VYNSLVKGLC 396

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           +      A +++ EMV +G  PD  TY  +I G+  +   ++++
Sbjct: 397 RQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAA 440



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 136/297 (45%), Gaps = 11/297 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVT--YNTLIDGYCNKGNLEMAFSFRD 69
            Y + +  +   GRL++    L   + + L P ++   Y   I  Y   G L  A    +
Sbjct: 37  AYRALIRELVSAGRLDDVDAALASARSH-LAPDSLQPLYVASIQAYARAGRLRAAVDAFE 95

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
            M      P A  YN ++  L+      +A  +   M   G+ PD+ T+ + +  +C  G
Sbjct: 96  RMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTG 155

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
               A  L   +  +G       Y +++  L        A  LF+  L + + PD+  FN
Sbjct: 156 RPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFN 215

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            ++   C  G++  + +LL ++ +  +  ++ T N  + G C  G++EEA  L+++M   
Sbjct: 216 NVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY 275

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + PD +       TYN L++GLCK+ +   A + L  M+++G  PDD TY ++I+G
Sbjct: 276 -VAPDVV-------TYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDG 324


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 180/314 (57%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + + G+  EG++ EA  ++++M ENG  P  VTYN++++G C  G+  +A
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M ++ +     TY+ +I  L  +  +  A  + KEM  KGI    +TYN L+ G
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G       L  +M+ + I P ++T+  L+ V  K+ ++ EA++L++  + +G+ P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ +N L+DG+C    +  A ++L  M R K  PD VT+ +L+ G C   +V++  ++  
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + +RG+  + +       TY+ L+QG C++ +  LAEEL +EMVS G+ PD  TY  L+
Sbjct: 393 NISKRGLVANAV-------TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 305 EGIA---SVDKAAE 315
           +G+     ++KA E
Sbjct: 446 DGLCDNGKLEKALE 459



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 166/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++    TY S V G+CK G+  + + +L+ M    +VP  +T+N L+D +  +G 
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM+ +GI P   TYN L+    M+ ++ EA++ML  M      PD +T+  
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC          +   +  +G+    +TY+ L+    +  ++  A++LF+  ++ G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ +  L+DG C NG +E+A  + +++ + K+    V Y T++ G C+ GKVE+A 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+        +TY  +I GLCK      A  LLR+M   G  P+D TY
Sbjct: 494 NLFCSLPCKGVKPNV-------MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546

Query: 301 FSLIEG 306
            +LI  
Sbjct: 547 NTLIRA 552



 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TY S V+G+C+ G    A  +L +M+E  +     TY+T+ID  C  G 
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S   EM  +GI  +  TYN L+  L    K  +   +LK+M  + IVP+ IT+N+
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ + + G  ++A  L+ EMI +GI P ++TY +L+     QNR+ EA+ + +  +   
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV F +LI G+C    ++    + + + +  +  + VTY+ L+ G C+ GK++ A 
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ PD        +TY  L+ GLC N + + A E+  ++    +      Y
Sbjct: 424 ELFQEMVSHGVLPDV-------MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476

Query: 301 FSLIEGIASVDKAAESSN 318
            ++IEG+    K  ++ N
Sbjct: 477 TTIIEGMCKGGKVEDAWN 494



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 172/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R V+ D +TY + +  +C++G ++ A  + ++M+  G+  + VTYN+L+ G C  G 
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                    +MV + I+P   T+N+L+   + E K+ EA+++ KEM  +GI P+ ITYN 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC      +A ++ D M+     P ++T+TSLI       R+ +  ++F N   +G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ + V ++ L+ G C +G I+ A  L +EM    V PD +TY  L+ G C  GK+E+A 
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +++  +    +        Y  +I+G+CK  + + A  L   +  KG+ P+  TY
Sbjct: 459 EIFEDLQKSKMDLGIV-------MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511

Query: 301 FSLIEGIASVDKAAESS 317
             +I G+      +E++
Sbjct: 512 TVMISGLCKKGSLSEAN 528



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 148/271 (54%), Gaps = 3/271 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P+  TY + + G C + RL EA+ ML+ M  N   P  VT+ +LI GYC    
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR 383

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++        + K+G++  A TY++L+       K+  A+++ +EM   G++PD +TY I
Sbjct: 384 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 443

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + +++    +   ++ YT++I  + K  ++ +A  LF +   KG
Sbjct: 444 LLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 503

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +  +I G C  G++  A  LL++M+     P++ TYNTL+    R G +  + 
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
           +L+++MK  G   D  S    ++  + L+ G
Sbjct: 564 KLIEEMKSCGFSADASSI---KMVIDMLLSG 591



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           ++A  + ++M  +  +P+ V ++             +   F  ++   GI     T N++
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           I+      K   A  +L ++ + G  PD+ T+N LI G    G   +A  L D M+  G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           QP ++TY S++  + +      A  L      + +  D+  ++ +ID  C +G I+ A S
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L KEM+   +    VTYN+L+ G C+ GK  +   LL  M  R I P+ I       T+N
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI-------TFN 302

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L+    K  +   A EL +EM+++GI+P+  TY +L++G    ++ +E++N
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++P+  TY S +  +C  GR  +ASR+L  M E  + P  VT++ LID +  +G 
Sbjct: 265 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+K+ I P   TY+ LI+   M  ++ EA  M + M  K   P+ +TYN 
Sbjct: 325 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++   L  EM  +G+    +TY +LI  L +      A ++F+  ++ G
Sbjct: 385 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 444

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C  G +E+A  + + + + K+ PD  TYN ++ G C+ GKVE+  
Sbjct: 445 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 504

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ I        Y  +I G C+    + A+ L REM   G  P+  TY
Sbjct: 505 DLFCSLSLKGVKPNVI-------IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 557

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 558 NTLIRARLRDGDKAASA 574



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG QPD +TYG+ V+G+CK G ++ A  +L++M++  +    V Y T+ID  CN  N
Sbjct: 195 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKN 254

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   EM  +GI P   TYN LI  L    +  +A  +L +M E+ I P+ +T++ 
Sbjct: 255 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 314

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEMI + I P + TY+SLI      +R+ EA  +FE  ++K 
Sbjct: 315 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 374

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N LI G C    +E    L +EM +  +  + VTYNTL+ G  + G  + A+
Sbjct: 375 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 434

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M   G+ PD I       TY+ L+ GLCK  + + A  +   +    + PD  TY
Sbjct: 435 KIFKKMVSDGVPPDII-------TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 487

Query: 301 FSLIEGIASVDKAAE 315
             +IEG+    K  +
Sbjct: 488 NIMIEGMCKAGKVED 502



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 172/306 (56%), Gaps = 7/306 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QP++ T+ + + G+    +  EA  ++++M   G  P   TY T+++G C +G++++A S
Sbjct: 166 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 225

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M K  I      Y  +I  L   + + +A ++  EM  KGI P+ +TYN LI   C
Sbjct: 226 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 285

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G    A  L  +MI + I P ++T+++LI    K+ +++EA++L++  + + + PDI 
Sbjct: 286 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 345

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +++LI+G C +  ++ A  + + M      P+ VTYNTL+ G C+  +VEE   L  +M
Sbjct: 346 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 405

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +RG+  + +       TYN LIQGL +  + D+A+++ ++MVS G+ PD  TY  L++G
Sbjct: 406 SQRGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 458

Query: 307 IASVDK 312
           +    K
Sbjct: 459 LCKYGK 464



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 168/335 (50%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++  +  D Y+Y   ++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 90  MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 149

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+M      P   T+N LIH L +  K  EA  ++  M  +G  PD  TY  
Sbjct: 150 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 209

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   A SL  +M    I+  ++ YT++I  L     + +A  LF     KG
Sbjct: 210 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 269

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N+LI   C  G    A  LL +M   K++P+ VT++ L+    ++GK+ EA 
Sbjct: 270 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 329

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +L D+M +R I PD  +++                            P  +TYN LI+G 
Sbjct: 330 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 389

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK +  +   EL REM  +G+  +  TY +LI+G+
Sbjct: 390 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 424



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 130/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S ++G C   RL+EA  M E M      P  VTYNTLI G+C    
Sbjct: 335 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 394

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM ++G++    TYN LI  L        A  + K+M   G+ PD ITY+I
Sbjct: 395 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 454

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  +KA  + + +    ++P + TY  +I  + K  ++ +   LF +   KG
Sbjct: 455 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 514

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++++  +I G C  G  E A +L +EM      P+  TYNTL+  R R G    + 
Sbjct: 515 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 574

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+  G   D
Sbjct: 575 ELIKEMRSCGFVGD 588



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 11/313 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K  + +    + E+M+   +     +YN LI+ +C +  L +A + 
Sbjct: 62  PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 121

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T + L++     +++ EA  ++ +M      P+++T+N LI+G   
Sbjct: 122 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 181

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
              A +A +L D M+ +G QP + TY +++  L K+  +  A  L +      +  D+V+
Sbjct: 182 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 241

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  +ID  C   N+  A +L  EMD   + P+ VTYN+L+   C  G+  +A RLL  M 
Sbjct: 242 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 301

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIE 305
            R I       NP  +T++ALI    K  EG L  AE+L  EM+ + I PD  TY SLI 
Sbjct: 302 ERKI-------NPNVVTFSALIDAFVK--EGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 352

Query: 306 GIASVDKAAESSN 318
           G    D+  E+ +
Sbjct: 353 GFCMHDRLDEAKH 365



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + + G+ + G  + A ++ ++M  +G+ P  +TY+ L+DG C  G 
Sbjct: 405 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    + + K  + P   TYN++I  +    K+ +  D+   +  KG+ P+ I Y  
Sbjct: 465 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 524

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR G  ++A +L  EM   G  P   TY +LI    +      + +L +   + G
Sbjct: 525 MISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 584

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
            + D    + +I+    +G +E+++
Sbjct: 585 FVGDASTISMVIN-MLHDGRLEKSY 608


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++P+  TY S +  +C  GR  +ASR+L  M E  + P  VT++ LID +  +G 
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+K+ I P   TY+ LI+   M  ++ EA  M + M  K   P+ +TYN 
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    ++   L  EM  +G+    +TY +LI  L +      A ++F+  ++ G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C  G +E+A  + + + + K+ PD  TYN ++ G C+ GKVE+  
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ I        Y  +I G C+    + A+ L REM   G  P+  TY
Sbjct: 521 DLFCSLSLKGVKPNVI-------IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 573

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 574 NTLIRARLRDGDKAASA 590



 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG QPD +TYG+ V+G+CK G ++ A  +L++M++  +    V Y T+ID  CN  N
Sbjct: 211 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKN 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   EM  +GI P   TYN LI  L    +  +A  +L +M E+ I P+ +T++ 
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+DEMI + I P + TY+SLI      +R+ EA  +FE  ++K 
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N LI G C    +E    L +EM +  +  + VTYNTL+ G  + G  + A+
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M   G+ PD I       TY+ L+ GLCK  + + A  +   +    + PD  TY
Sbjct: 451 KIFKKMVSDGVPPDII-------TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503

Query: 301 FSLIEGIASVDKAAE 315
             +IEG+    K  +
Sbjct: 504 NIMIEGMCKAGKVED 518



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 172/306 (56%), Gaps = 7/306 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QP++ T+ + + G+    +  EA  ++++M   G  P   TY T+++G C +G++++A S
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M K  I      Y  +I  L   + + +A ++  EM  KGI P+ +TYN LI   C
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G    A  L  +MI + I P ++T+++LI    K+ +++EA++L++  + + + PDI 
Sbjct: 302 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 361

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +++LI+G C +  ++ A  + + M      P+ VTYNTL+ G C+  +VEE   L  +M
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +RG+  + +       TYN LIQGL +  + D+A+++ ++MVS G+ PD  TY  L++G
Sbjct: 422 SQRGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474

Query: 307 IASVDK 312
           +    K
Sbjct: 475 LCKYGK 480



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 168/335 (50%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++  +  D Y+Y   ++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 106 MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 165

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+M      P   T+N LIH L +  K  EA  ++  M  +G  PD  TY  
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   A SL  +M    I+  ++ YT++I  L     + +A  LF     KG
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N+LI   C  G    A  LL +M   K++P+ VT++ L+    ++GK+ EA 
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 345

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +L D+M +R I PD  +++                            P  +TYN LI+G 
Sbjct: 346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK +  +   EL REM  +G+  +  TY +LI+G+
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 130/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S ++G C   RL+EA  M E M      P  VTYNTLI G+C    
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM ++G++    TYN LI  L        A  + K+M   G+ PD ITY+I
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  +KA  + + +    ++P + TY  +I  + K  ++ +   LF +   KG
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++++  +I G C  G  E A +L +EM      P+  TYNTL+  R R G    + 
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590

Query: 241 RLLDQMKRRGIKPD 254
            L+ +M+  G   D
Sbjct: 591 ELIKEMRSCGFVGD 604



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 11/313 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K  + +    + E+M+   +     +YN LI+ +C +  L +A + 
Sbjct: 78  PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T + L++     +++ EA  ++ +M      P+++T+N LI+G   
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
              A +A +L D M+ +G QP + TY +++  L K+  +  A  L +      +  D+V+
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  +ID  C   N+  A +L  EMD   + P+ VTYN+L+   C  G+  +A RLL  M 
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIE 305
            R I       NP  +T++ALI    K  EG L  AE+L  EM+ + I PD  TY SLI 
Sbjct: 318 ERKI-------NPNVVTFSALIDAFVK--EGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368

Query: 306 GIASVDKAAESSN 318
           G    D+  E+ +
Sbjct: 369 GFCMHDRLDEAKH 381



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++ TY + + G+ + G  + A ++ ++M  +G+ P  +TY+ L+DG C  G 
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    + + K  + P   TYN++I  +    K+ +  D+   +  KG+ P+ I Y  
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 540

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR G  ++A +L  EM   G  P   TY +LI    +      + +L +   + G
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
            + D    + +I+    +G +E+++
Sbjct: 601 FVGDASTISMVIN-MLHDGRLEKSY 624


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 180/314 (57%), Gaps = 10/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + + G+  EG++ EA  ++++M ENG  P  VTYN++++G C  G+  +A
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M ++ +     TY+ +I  L  +  +  A  + KEM  KGI    +TYN L+ G
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G       L  +M+ + I P ++T+  L+ V  K+ ++ EA++L++  + +G+ P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ +N L+DG+C    +  A ++L  M R K  PD VT+ +L+ G C   +V++  ++  
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + +RG+  + +       TY+ L+QG C++ +  LAEEL +EMVS G+ PD  TY  L+
Sbjct: 393 NISKRGLVANAV-------TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 305 EGIA---SVDKAAE 315
           +G+     ++KA E
Sbjct: 446 DGLCDNGKLEKALE 459



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 166/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++    TY S V G+CK G+  + + +L+ M    +VP  +T+N L+D +  +G 
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM+ +GI P   TYN L+    M+ ++ EA++ML  M      PD +T+  
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC          +   +  +G+    +TY+ L+    +  ++  A++LF+  ++ G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ +  L+DG C NG +E+A  + +++ + K+    V Y T++ G C+ GKVE+A 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+        +TY  +I GLCK      A  LLR+M   G  P+D TY
Sbjct: 494 NLFCSLPCKGVKPNV-------MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546

Query: 301 FSLIEG 306
            +LI  
Sbjct: 547 NTLIRA 552



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TY S V+G+C+ G    A  +L +M+E  +     TY+T+ID  C  G 
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S   EM  +GI  +  TYN L+  L    K  +   +LK+M  + IVP+ IT+N+
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ + + G  ++A  L+ EMI +GI P ++TY +L+     QNR+ EA+ + +  +   
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV F +LI G+C    ++    + + + +  +  + VTY+ L+ G C+ GK++ A 
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ PD        +TY  L+ GLC N + + A E+  ++    +      Y
Sbjct: 424 ELFQEMVSHGVLPDV-------MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476

Query: 301 FSLIEGIASVDKAAESSN 318
            ++IEG+    K  ++ N
Sbjct: 477 TTIIEGMCKGGKVEDAWN 494



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 172/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R V+ D +TY + +  +C++G ++ A  + ++M+  G+  + VTYN+L+ G C  G 
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                    +MV + I+P   T+N+L+   + E K+ EA+++ KEM  +GI P+ ITYN 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC      +A ++ D M+     P ++T+TSLI       R+ +  ++F N   +G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ + V ++ L+ G C +G I+ A  L +EM    V PD +TY  L+ G C  GK+E+A 
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +++  +    +        Y  +I+G+CK  + + A  L   +  KG+ P+  TY
Sbjct: 459 EIFEDLQKSKMDLGIV-------MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511

Query: 301 FSLIEGIASVDKAAESS 317
             +I G+      +E++
Sbjct: 512 TVMISGLCKKGSLSEAN 528



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 142/258 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P+  TY + + G C + RL EA+ ML+ M  N   P  VT+ +LI GYC    
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR 383

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++        + K+G++  A TY++L+       K+  A+++ +EM   G++PD +TY I
Sbjct: 384 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 443

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + +++    +   ++ YT++I  + K  ++ +A  LF +   KG
Sbjct: 444 LLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 503

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +  +I G C  G++  A  LL++M+     P++ TYNTL+    R G +  + 
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563

Query: 241 RLLDQMKRRGIKPDHISF 258
           +L+++MK  G   D  S 
Sbjct: 564 KLIEEMKSCGFSADASSI 581



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           ++A  + ++M  +  +P+ V ++             +   F  ++   GI     T N++
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           I+      K   A  +L ++ + G  PD+ T+N LI G    G   +A  L D M+  G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           QP ++TY S++  + +      A  L      + +  D+  ++ +ID  C +G I+ A S
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L KEM+   +    VTYN+L+ G C+ GK  +   LL  M  R I P+ I       T+N
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI-------TFN 302

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L+    K  +   A EL +EM+++GI+P+  TY +L++G    ++ +E++N
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 96/193 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  RG+  ++ TY   V G C+ G+++ A  + ++M  +G++P  +TY  L+DG C+ G 
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    +++ K  +      Y  +I  +    K+ +A ++   +  KG+ P+ +TY +
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G+  +A  L  +M   G  P   TY +LI    +   +  + +L E   + G
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573

Query: 181 MLPDIVMFNALID 193
              D      +ID
Sbjct: 574 FSADASSIKMVID 586



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 11/129 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +GV+P+  TY   +SG+CK+G L EA+ +L +M+E+G  P   TYNTLI  +   G+
Sbjct: 499 LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGD 558

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-----------EADDMLKEMGEK 109
           L  +    +EM   G    AS+  ++I  LL   K +              D+L+  G +
Sbjct: 559 LTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSE 618

Query: 110 GIVPDSITY 118
            I   S+T+
Sbjct: 619 KIRLSSLTF 627


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 170/308 (55%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   TY + + G+CK G    A ++L++M+E G  P  V YNT+ID  C       A
Sbjct: 171 GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEA 230

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F  EMV QGI P   TY+ ++H      ++ EA  + K+M  + ++P+++T+ IL++G
Sbjct: 231 MYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDG 290

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +A  + + M   G++P   TY++L+     Q++M EA +LF+  + KG  P 
Sbjct: 291 LCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPS 350

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           + ++N LI+GHC +  +  A +LL EM    + PD VTY+TLM G C+ G+ + A++L  
Sbjct: 351 VRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFK 410

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+ PD I       TY+ L+ GLCK+   D A  LL+ M    I P    Y  LI
Sbjct: 411 EMCSYGLLPDSI-------TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILI 463

Query: 305 EGIASVDK 312
           +G+ +  K
Sbjct: 464 QGMCNFGK 471



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +PD   Y + +  +CK+ R  EA     +M + G+ P  VTY++++ G+CN G 
Sbjct: 202 MEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQ 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S   +M+ + +MP   T+ +L+  L  E  ++EA  + + M E G+ PD+ TY+ 
Sbjct: 262 LNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSA 321

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC      +A  L D M+ KG  P++  Y  LI    K  R+ EA  L      + 
Sbjct: 322 LMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRD 381

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V ++ L+ G C  G  + A  L KEM    + PD +TY+ L+ G C+ G ++EA 
Sbjct: 382 LTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAF 441

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL  M+   I+P HI        YN LIQG+C   + + A EL   +  KGI P   TY
Sbjct: 442 RLLKAMQESKIEP-HICI------YNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTY 494

Query: 301 FSLIEGI 307
             +I G+
Sbjct: 495 TVMISGL 501



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 171/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QP   T+G+ ++G+C + ++ +A ++ +++ + G  P+ +TY T+I G C  G+
Sbjct: 132 MFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGH 191

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M ++G  P    YN +I  L  +R+  EA     EM ++GI P+ +TY+ 
Sbjct: 192 TTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSS 251

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+C  G   +A SL  +MI + + P  +T+T L+  L K+  ++EA ++FE     G
Sbjct: 252 ILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   ++AL+DG+C    ++ A  L   M      P    YN L++G C+  ++ EA+
Sbjct: 312 VEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAK 371

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  R + PD +       TY+ L+QG C+     +A++L +EM S G+ PD  TY
Sbjct: 372 TLLSEMYDRDLTPDTV-------TYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITY 424

Query: 301 FSLIEGIA 308
             L++G+ 
Sbjct: 425 SILLDGLC 432



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  TY S + G C  G+L EA+ + +QM    ++P  VT+  L+DG C +G 
Sbjct: 237 MVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGM 296

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M + G+ P A TY+ L+    ++ +M EA  +   M  KG  P    YNI
Sbjct: 297 ILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNI 356

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +A +L  EM  + + P  +TY++L+    +  R   A +LF+   + G
Sbjct: 357 LINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYG 416

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD + ++ L+DG C +G+++ AF LLK M   K+ P    YN L+ G C  GK+E AR
Sbjct: 417 LLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAAR 476

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +GI+       P+ +TY  +I GL K    + A E+ R+MV  G  P+  TY
Sbjct: 477 ELFSNLFVKGIQ-------PSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTY 529

Query: 301 FSLIEGI 307
              I+G 
Sbjct: 530 NVAIQGF 536



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 165/314 (52%), Gaps = 9/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGR--LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           M    ++P+ YT    ++ +C   R  +  A   L +M + GL PT VT+ TL++G C+K
Sbjct: 95  MDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSK 154

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
             +  A    DE+ K G  P+  TY  +I  L        A  +LK+M EKG  PD + Y
Sbjct: 155 AKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAY 214

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +I+  C+   A +A     EM+ +GI P ++TY+S++       ++ EA  LF+  + 
Sbjct: 215 NTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIG 274

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           + ++P+ V F  L+DG C  G I  A  + + M    V PD  TY+ LM G C Q +++E
Sbjct: 275 RNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDE 334

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A++L D M  +G       F P+   YN LI G CK++  + A+ LL EM  + +TPD  
Sbjct: 335 AQKLFDIMVGKG-------FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTV 387

Query: 299 TYFSLIEGIASVDK 312
           TY +L++G     +
Sbjct: 388 TYSTLMQGFCQAGR 401



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 140/293 (47%), Gaps = 35/293 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V P++ T+   V G+CKEG + EA R+ E M ENG+ P A TY+ L+DGYC +  
Sbjct: 272 MIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQ 331

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML----------------- 103
           ++ A    D MV +G  P+   YN+LI+     R++ EA  +L                 
Sbjct: 332 MDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYST 391

Query: 104 ------------------KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                             KEM   G++PDSITY+IL++G C+ G+  +AF L   M    
Sbjct: 392 LMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESK 451

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I+P +  Y  LI  +    ++  A +LF N   KG+ P +V +  +I G    G    A 
Sbjct: 452 IEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEAC 511

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
            + ++M      P+  TYN  + G  R G    A RL+++M  RG   D  +F
Sbjct: 512 EMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTF 564



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 115/227 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P    Y   ++G CK  RL EA  +L +M +  L P  VTY+TL+ G+C  G 
Sbjct: 342 MVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGR 401

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A     EM   G++P + TY++L+  L     + EA  +LK M E  I P    YNI
Sbjct: 402 PQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNI 461

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G  + A  L   +  KGIQP+++TYT +I  L K+    EA ++F   +  G
Sbjct: 462 LIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNG 521

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            LP+   +N  I G   NG+   A  L++EM       D  T+  L+
Sbjct: 522 CLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 132/268 (49%), Gaps = 9/268 (3%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P+++T       Y N  ++  A +  ++++    +P    +N L+  L+ ++       +
Sbjct: 32  PSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISL 91

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCG--NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
            K+M    I P+  T  ILIN  C     +   AFS   +M   G+QPT +T+ +L+  L
Sbjct: 92  CKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGL 151

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
             + ++I+A +LF+     G  P ++ +  +I G C  G+   A  LLK+M+     PD 
Sbjct: 152 CSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDV 211

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           V YNT++   C+  +  EA     +M  +GI P+ +       TY++++ G C   + + 
Sbjct: 212 VAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVV-------TYSSILHGFCNLGQLNE 264

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIA 308
           A  L ++M+ + + P+  T+  L++G+ 
Sbjct: 265 ATSLFKQMIGRNVMPNTVTFTILVDGLC 292



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 97/193 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD+ TY + + G C+ GR + A ++ ++M   GL+P ++TY+ L+DG C  G+
Sbjct: 377 MYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGH 436

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF     M +  I P    YN+LI  +    K+  A ++   +  KGI P  +TY +
Sbjct: 437 LDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTV 496

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G + +A  +  +M+  G  P   TY   I    +      A +L E  + +G
Sbjct: 497 MISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRG 556

Query: 181 MLPDIVMFNALID 193
              D   F  L+D
Sbjct: 557 FSADSSTFQMLLD 569



 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           I P SIT     + Y    +   A +  ++++     P ++ +  L+  L K+       
Sbjct: 30  ISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVI 89

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNG--NIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
            L +      + P++     LI+  C +   ++  AFS L +M ++ + P  VT+ TL++
Sbjct: 90  SLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLN 149

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           G C + K+ +A +L D++ + G       F P+ +TY  +I+GLCK      A +LL++M
Sbjct: 150 GLCSKAKIIDAVKLFDEIGKMG-------FAPSLITYTTIIKGLCKIGHTTNALQLLKKM 202

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAES 316
             KG  PD   Y ++I+ +    +A E+
Sbjct: 203 EEKGCKPDVVAYNTVIDSLCKDRRANEA 230


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+PD  TY   +  +CK GR  EA ++ + M + GL P   TY TL+ GY  KG 
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++LI     + K+ +A  +  +M ++G+ P+++TY  
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G  + A    ++MI +G+ P  + Y SLI  L   N+   A++L    L +G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + FN++ID HC  G +  +  L + M R+ V P+ +TYNTL++G C  GK++EA 
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAM 531

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KP+ +       TY+ LI G CK    + A  L +EM S G++PD  TY
Sbjct: 532 KLLSGMVSVGLKPNTV-------TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584

Query: 301 FSLIEGIASVDKAAES 316
             +++G+    + A +
Sbjct: 585 NIILQGLFQTRRTAAA 600



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 178/315 (56%), Gaps = 10/315 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M   G  P+ ++Y   + G+C E R +EA  +L  M ++   G  P  V+Y T+I+G+  
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G+ + A+S   EM+ +GI+P   TYN +I  L   + M +A ++L  M + G++PD +T
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN +++GYC  G  K+A     +M   G++P ++TY+ L+  L K  R +EA ++F++  
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ P+I  +  L+ G+ T G +     LL  M R  +HPD   ++ L+     QGKV+
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVD 388

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  +  +M+++G+       NP  +TY A+I  LCK+   + A     +M+ +G++P +
Sbjct: 389 QAMLVFSKMRQQGL-------NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441

Query: 298 NTYFSLIEGIASVDK 312
             Y SLI G+ + +K
Sbjct: 442 IVYNSLIHGLCTCNK 456



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD  TY S + G C  G+ +EA   L++M+ +G+ P  VTY+ L+D  C  G 
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M K+G+ P  +TY  L+     +  +VE   +L  M   GI PD   ++I
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y   G   +A  +  +M  +G+ P  +TY ++I +L K  R+ +A   FE  + +G
Sbjct: 377 LICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  +++N+LI G CT    ERA  L+ EM    +  + + +N+++   C++G+V E+ 
Sbjct: 437 LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESE 496

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L + M R G+KP+ I       TYN LI G C   + D A +LL  MVS G+ P+  TY
Sbjct: 497 KLFELMVRIGVKPNVI-------TYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 301 FSLIEGIASVDKAAES 316
            +LI G   + +  ++
Sbjct: 550 STLINGYCKISRMEDA 565



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 167/312 (53%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD  +Y + ++G  KEG  ++A     +M + G++P  VTYN++I   C    ++ A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               + MVK G+MP   TYN ++H      +  EA   LK+M   G+ PD +TY++L++ 
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +A  + D M  +G++P + TY +L+   + +  ++E   L +  +  G+ PD
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             +F+ LI  +   G +++A  +  +M +  ++P+ VTY  ++   C+ G+VE+A    +
Sbjct: 371 HYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G+ P +I        YN+LI GLC   + + AEEL+ EM+ +GI  +   + S+I
Sbjct: 431 QMIDEGLSPGNI-------VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483

Query: 305 EGIASVDKAAES 316
           +      +  ES
Sbjct: 484 DSHCKEGRVIES 495



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 167/318 (52%), Gaps = 17/318 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V PD  TYG  +   C+ GRL+     L  + + G    A+ +  L+ G C   + +  M
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
               R  M + G +P   +YN+L+  L  E +  EA ++L  M +    G  PD ++Y  
Sbjct: 143 DIVLR-RMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G++ KA+S + EM+ +GI P ++TY S+I  L K   M +A ++    +  G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +N+++ G+C++G  + A   LK+M    V PD VTY+ LM   C+ G+  EAR
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           ++ D M +RG+KP+         TY  L+QG     +G L E   LL  MV  GI PD  
Sbjct: 322 KIFDSMTKRGLKPEIT-------TYGTLLQGYA--TKGALVEMHGLLDLMVRNGIHPDHY 372

Query: 299 TYFSLIEGIASVDKAAES 316
            +  LI   A+  K  ++
Sbjct: 373 VFSILICAYANQGKVDQA 390



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD Y +   +     +G++++A  +  +M++ GL P AVTY  +I   C  G 
Sbjct: 362 MVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ +G+ P    YN LIH L    K   A++++ EM ++GI  ++I +N 
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L + M+  G++P ++TY +LI       +M EA +L    ++ G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V ++ LI+G+C    +E A  L KEM+   V PD +TYN ++ G  +  +   A+
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++   G + +         TYN ++ GLCKN+  D A ++ + +    +  +  T+
Sbjct: 602 ELYVRITESGTQIELS-------TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+ +  V +  E+ +
Sbjct: 655 NIMIDALLKVGRNDEAKD 672



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 158/355 (44%), Gaps = 53/355 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P++ TYG+ +  +CK GR+E+A    EQM + GL P  + YN+LI G C    
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456

Query: 61  LEMAFSFRDEM-----------------------------------VKQGIMPTASTYNL 85
            E A     EM                                   V+ G+ P   TYN 
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+   +  KM EA  +L  M   G+ P+++TY+ LINGYC+    + A  L  EM   G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + + +  M +  +  T+N ++    + G+ +EA+ L       G+ P++ ++    +  
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR--LMAE 694

Query: 266 NALIQGL---------------CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           N + QGL               C    G L   ++RE++ +G      TY S+I+
Sbjct: 695 NIIGQGLLEELDQLFLSMEDNGCTVDSGML-NFIVRELLQRGEITRAGTYLSMID 748



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  TY + ++G C  G+++EA ++L  M   GL P  VTY+TLI+GYC    +E A
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + E G   +  TYNI+++G
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  +   +    ++    T+  +I  L K  R  EA  LF  F + G++P+
Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  + +     G +E    L   M+      D    N ++    ++G++  A   L 
Sbjct: 686 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745

Query: 245 QMKRR 249
            +  +
Sbjct: 746 MIDEK 750



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 11/214 (5%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + PD  TY ILI   CR G     F+    +I KG +   + +T L+  L    R 
Sbjct: 79  GADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRT 138

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DR-MKVHPDEVT 222
            +A D +       G +P++  +N L+ G C     + A  LL  M  DR     PD V+
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y T+++G  ++G  ++A     +M  RGI PD +       TYN++I  LCK Q  D A 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV-------TYNSIIAALCKAQAMDKAM 251

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E+L  MV  G+ PD  TY S++ G  S  +  E+
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 49/115 (42%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++ T+   +  + K GR +EA  +      NGLVP   TY  + +    +G LE      
Sbjct: 650 EARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 709

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
             M   G    +   N ++ ELL   ++  A   L  + EK    ++ T ++ I+
Sbjct: 710 LSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P+  TY S +S +C  GR  +AS++L  M E  + P  VT+N LID +  +G 
Sbjct: 248 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 307

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M+K+ I P   TYN L++   M  ++ +A  M + M  K   PD +TYN 
Sbjct: 308 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 367

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    +    L  EM H+G+    +TYT+LI  L        A ++F+  ++ G
Sbjct: 368 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 427

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C NG +E+A  +   M + ++  D   Y T++ G C+ GKV++  
Sbjct: 428 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 487

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ +       TYN +I GLC  +    A  LL++M   G  P+  TY
Sbjct: 488 DLFCSLSLKGVKPNVV-------TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 540

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 541 NTLIRAHLRDGDKAASA 557



 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 179/318 (56%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ T+ + + G+    +  EA  ++++M + G  P  VTY  +++G C +G+
Sbjct: 143 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 202

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A +  ++M    I      +N +I  L   R + +A ++ KEM  KGI P+ +TY+ 
Sbjct: 203 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 262

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L  +MI K I P ++T+ +LI    K+ + +EA++L+++ + + 
Sbjct: 263 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 322

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N+L++G C +  +++A  + + M      PD VTYNTL+ G C+  +VE+  
Sbjct: 323 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 382

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RG+  D +       TY  LIQGL  + + D A+++ ++MVS G+ PD  TY
Sbjct: 383 ELFREMSHRGLVGDTV-------TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 435

Query: 301 FSLIEGIAS---VDKAAE 315
             L++G+ +   ++KA E
Sbjct: 436 SILLDGLCNNGKLEKALE 453



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 164/313 (52%), Gaps = 7/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QP+  TYG  V+G+CK G  + A  +L +M+   +    V +NT+ID  C   +
Sbjct: 178 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M EK I P+ +T+N 
Sbjct: 238 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 297

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+D+MI + I P + TY SL+      +R+ +A Q+FE  ++K 
Sbjct: 298 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 357

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N LI G C +  +E    L +EM    +  D VTY TL+ G    G  + A+
Sbjct: 358 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 417

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  QM   G+ PD        +TY+ L+ GLC N + + A E+   M    I  D   Y
Sbjct: 418 KVFKQMVSDGVPPD-------IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 470

Query: 301 FSLIEGIASVDKA 313
            ++IEG+    K 
Sbjct: 471 TTMIEGMCKAGKV 483



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 171/325 (52%), Gaps = 28/325 (8%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           YTY   ++  C+  ++  A  +L +M + G  P+ VT ++L++GYC+   +  A +  D+
Sbjct: 83  YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 142

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           MV+ G  P   T+  LIH L +  K  EA  ++  M ++G  P+ +TY +++NG C+ G+
Sbjct: 143 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 202

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A +L ++M    I+  ++ + ++I  L K   + +A  LF+    KG+ P++V +++
Sbjct: 203 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 262

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LI   C+ G    A  LL +M   K++P+ VT+N L+    ++GK  EA +L D M +R 
Sbjct: 263 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 322

Query: 251 IKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAE 282
           I PD  ++N                            P  +TYN LI+G CK++  +   
Sbjct: 323 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 382

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI 307
           EL REM  +G+  D  TY +LI+G+
Sbjct: 383 ELFREMSHRGLVGDTVTYTTLIQGL 407



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 169/345 (48%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR + P    +   +S + K  + +    + E+M+   +V    TYN LI+ +C +  
Sbjct: 39  VKSRPL-PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQ 97

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A +   +M+K G  P+  T + L++     +++ +A  ++ +M E G  PD+IT+  
Sbjct: 98  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 157

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G      A +A +L D M+ +G QP ++TY  ++  L K+     A  L     A  
Sbjct: 158 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK 217

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+V+FN +ID  C   +++ A +L KEM+   + P+ VTY++L+   C  G+  +A 
Sbjct: 218 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 277

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LL  M  + I P+ ++FN                            P   TYN+L+ G 
Sbjct: 278 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 337

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           C +   D A+++   MVSK   PD  TY +LI+G     +  + +
Sbjct: 338 CMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 382



 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 129/247 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S V+G C   RL++A +M E M      P  VTYNTLI G+C    
Sbjct: 318 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 377

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM  +G++    TY  LI  L  +     A  + K+M   G+ PD +TY+I
Sbjct: 378 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 437

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + D M    I+  +  YT++I  + K  ++ +   LF +   KG
Sbjct: 438 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 497

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N +I G C+   ++ A++LLK+M      P+  TYNTL+    R G    + 
Sbjct: 498 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 557

Query: 241 RLLDQMK 247
            L+ +M+
Sbjct: 558 ELIREMR 564



 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 157/316 (49%), Gaps = 28/316 (8%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +L++A  +   M ++  +P+ V +N L+         ++  S  ++M +  I+    TYN
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 86

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +LI+      ++  A  +L +M + G  P  +T + L+NGYC       A +L D+M+  
Sbjct: 87  ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 146

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P  +T+T+LI  L   N+  EA  L +  + +G  P++V +  +++G C  G+ + A
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 206

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
            +LL +M+  K+  D V +NT++   C+   V++A  L  +M+ +GI+P+ +++      
Sbjct: 207 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 266

Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                 NP  +T+NALI    K  +   AE+L  +M+ + I PD
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 326

Query: 297 DNTYFSLIEGIASVDK 312
             TY SL+ G    D+
Sbjct: 327 IFTYNSLVNGFCMHDR 342



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 122/296 (41%), Gaps = 85/296 (28%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----GIVPDSI 116
           L+ A      MVK   +P+   +N L+  +   +K     D++  +GEK     IV    
Sbjct: 28  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKF----DVVISLGEKMQRLEIVHGLY 83

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYNILIN +CR      A +L  +M+  G +                             
Sbjct: 84  TYNILINCFCRRSQISLALALLGKMMKLGYE----------------------------- 114

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
                 P IV  ++L++G+C    I  A +L+ +M  M   PD +T+ TL+HG     K 
Sbjct: 115 ------PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 168

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL----------- 285
            EA  L+D+M +RG +P+ +       TY  ++ GLCK  + DLA  LL           
Sbjct: 169 SEAVALVDRMVQRGCQPNLV-------TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD 221

Query: 286 ------------------------REMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
                                   +EM +KGI P+  TY SLI  + S  + +++S
Sbjct: 222 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 277



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++ D Y Y + + GMCK G++++   +   +   G+ P  VTYNT+I G C+K  
Sbjct: 458 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 517

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A++   +M + G +P + TYN LI   L +     + ++++EM     V D+ T  +
Sbjct: 518 LQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 577

Query: 121 LIN 123
           + N
Sbjct: 578 VAN 580



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+P+  TY + +SG+C +  L+EA  +L++MKE+G +P + TYNTLI  +   G+   
Sbjct: 496 KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAA 555

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM     +  AST  L+ + L
Sbjct: 556 SAELIREMRSCRFVGDASTIGLVANML 582


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 169/304 (55%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   T    ++G CK GR+E+A   ++Q   NG  P  +TYNT ++G C  G+
Sbjct: 246 MLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGH 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D MV++G  P   TYN++++ L    ++ EA  +L +M E+G +PD  T+N 
Sbjct: 306 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNT 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C     ++A  L  ++  KG+ P + T+  LI  L K      A +LFE   + G
Sbjct: 366 LIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V +N LID  C+ G + +A  LLKEM+        VTYNT++ G C++ ++EEA 
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAE 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + DQM  +GI  + I+F       N LI GLCK++  D A +L+ +M+S+G+ P++ TY
Sbjct: 486 EVFDQMDLQGISRNAITF-------NTLIDGLCKDKRIDDANQLISQMISEGLQPNNITY 538

Query: 301 FSLI 304
            S++
Sbjct: 539 NSIL 542



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 171/310 (55%), Gaps = 7/310 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           + G +PD  TY +FV+G+C+ G +  A ++++ M + G  P   TYN +++  C  G LE
Sbjct: 283 ANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLE 342

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++MV++G +P  +T+N LI  L    ++ EA D+ +++  KG+ PD  T+NILI
Sbjct: 343 EAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILI 402

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           N  C+ G+ + A  L +EM   G  P  +TY +LI  L    ++ +A  L +   + G  
Sbjct: 403 NALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCP 462

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
              V +N +IDG C    IE A  +  +MD   +  + +T+NTL+ G C+  ++++A +L
Sbjct: 463 RSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQL 522

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           + QM   G++P++I       TYN+++   CK  +   A ++L+ M + G   D  TY +
Sbjct: 523 ISQMISEGLQPNNI-------TYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGT 575

Query: 303 LIEGIASVDK 312
           LI G+    +
Sbjct: 576 LINGLCKAGR 585



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 176/346 (50%), Gaps = 29/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD  T+ + +  +C+  ++  A  MLE+M  +G+ P   T+ TL+ G+  +G+
Sbjct: 176 MGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGS 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   +  M++ G  PT  T N+LI+      ++ +A   +++    G  PD ITYN 
Sbjct: 236 IKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNT 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +NG C+ G+   A  + D M+ +G  P + TY  ++  L K  ++ EA  +    + +G
Sbjct: 296 FVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERG 355

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPDI  FN LI   C+   +E A  L +++    + PD  T+N L++  C+ G  + A 
Sbjct: 356 CLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLAL 415

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
           RL ++MK  G  PD +++N                             + +TYN +I GL
Sbjct: 416 RLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGL 475

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           CK    + AEE+  +M  +GI+ +  T+ +LI+G+   DK  + +N
Sbjct: 476 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK-DKRIDDAN 520



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  T+ + +  +C   RLEEA  +  Q+   GL P   T+N LI+  C  G+
Sbjct: 351 MVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGD 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A    +EM   G  P   TYN LI  L    K+ +A D+LKEM   G    ++TYN 
Sbjct: 411 PQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNT 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+    ++A  + D+M  +GI    +T+ +LI  L K  R+ +A+QL    +++G
Sbjct: 471 IIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEG 530

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +N+++  +C  G+I++A  +L+ M       D VTY TL++G C+ G+ + A 
Sbjct: 531 LQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVAL 590

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M+ +G++    ++NP       +IQ L +      A  L REM   G  PD  TY
Sbjct: 591 KLLRGMRIKGMRATPKAYNP-------VIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTY 643

Query: 301 FSLIEGI 307
             +  G+
Sbjct: 644 KIVFRGL 650



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 156/312 (50%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+Q D+  Y   ++ + +  +++    +  +M E G+ P  VT+NTL+   C    +  A
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM   G+ P  +T+  L+   + E  +  A  +   M E G  P  +T N+LING
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLING 264

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G  + A     + I  G +P  +TY + +  L +   +  A ++ +  + +G  PD
Sbjct: 265 YCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPD 324

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +++  C NG +E A  +L +M      PD  T+NTL+   C   ++EEA  L  
Sbjct: 325 VFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLAR 384

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           Q+  +G+ PD         T+N LI  LCK  +  LA  L  EM S G TPD+ TY +LI
Sbjct: 385 QVTLKGLSPD-------VYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLI 437

Query: 305 EGIASVDKAAES 316
           + + S+ K  ++
Sbjct: 438 DNLCSLGKLGKA 449



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 136/259 (52%), Gaps = 1/259 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G  PD  TY + +  +C  G+L +A  +L++M+  G   + VTYNT+IDG C K  
Sbjct: 421 MKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMR 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D+M  QGI   A T+N LI  L  ++++ +A+ ++ +M  +G+ P++ITYN 
Sbjct: 481 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNS 540

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ G+ KKA  +   M   G +  ++TY +LI  L K  R   A +L      KG
Sbjct: 541 ILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKG 600

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M      +N +I       N   A +L +EM  +   PD  TY  +  G CR  G + EA
Sbjct: 601 MRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREA 660

Query: 240 RRLLDQMKRRGIKPDHISF 258
              L +M  +G  P+  SF
Sbjct: 661 FDFLLEMVDKGFIPEFSSF 679



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 36/165 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+QP++ TY S ++  CK+G +++A+ +L+ M  NG     VTY TLI+G C  G 
Sbjct: 526 MISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL----------MERKMVE------------ 98
            ++A      M  +G+  T   YN +I  L           + R+M E            
Sbjct: 586 TQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKI 645

Query: 99  --------------ADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
                         A D L EM +KG +P+  ++ +L  G    G
Sbjct: 646 VFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 39/149 (26%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLE-------------------------- 34
           M + G + D  TYG+ ++G+CK GR + A ++L                           
Sbjct: 561 MTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNN 620

Query: 35  ---------QMKENGLVPTAVTYNTLIDGYC-NKGNLEMAFSFRDEMVKQGIMPTASTYN 84
                    +M E G  P A TY  +  G C   G++  AF F  EMV +G +P  S++ 
Sbjct: 621 TRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFR 680

Query: 85  LLIHELL---MERKMVEADDMLKEMGEKG 110
           +L   LL   M+   + A +++ E  + G
Sbjct: 681 MLAEGLLNLGMDDYFIRAIEIIIEKADLG 709


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 175/304 (57%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + + G+  EG++ EA  ++++M ENG  P  VTYN++++G C  G+  +A
Sbjct: 143 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 202

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M ++ +     TY+ +I  L  +  +  A  + KEM  KGI    +TYN L+ G
Sbjct: 203 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 262

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G       L  +M+ + I P ++T+  L+ V  K+ ++ EA++L++  + +G+ P+
Sbjct: 263 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 322

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ +N L+DG+C    +  A ++L  M R K  PD VT+ +L+ G C   +V++  ++  
Sbjct: 323 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 382

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + +RG+  + +       TY+ L+QG C++ +  LAEEL +EMVS G+ PD  TY  L+
Sbjct: 383 NISKRGLVANAV-------TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 435

Query: 305 EGIA 308
           +G+ 
Sbjct: 436 DGLC 439



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 166/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++    TY S V G+CK G+  + + +L+ M    +VP  +T+N L+D +  +G 
Sbjct: 244 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 303

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM+ +GI P   TYN L+    M+ ++ EA++ML  M      PD +T+  
Sbjct: 304 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 363

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC          +   +  +G+    +TY+ L+    +  ++  A++LF+  ++ G
Sbjct: 364 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 423

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD++ +  L+DG C NG +E+A  + +++ + K+    V Y T++ G C+ GKVE+A 
Sbjct: 424 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 483

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+        +TY  +I GLCK      A  LLR+M   G  P+D TY
Sbjct: 484 NLFCSLPCKGVKPNV-------MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 536

Query: 301 FSLIEG 306
            +LI  
Sbjct: 537 NTLIRA 542



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TY S V+G+C+ G    A  +L +M+E  +     TY+T+ID  C  G 
Sbjct: 174 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 233

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S   EM  +GI  +  TYN L+  L    K  +   +LK+M  + IVP+ IT+N+
Sbjct: 234 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 293

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ + + G  ++A  L+ EMI +GI P ++TY +L+     QNR+ EA+ + +  +   
Sbjct: 294 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 353

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV F +LI G+C    ++    + + + +  +  + VTY+ L+ G C+ GK++ A 
Sbjct: 354 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 413

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ PD        +TY  L+ GLC N + + A E+  ++    +      Y
Sbjct: 414 ELFQEMVSHGVLPDV-------MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 466

Query: 301 FSLIEGIASVDKAAESSN 318
            ++IEG+    K  ++ N
Sbjct: 467 TTIIEGMCKGGKVEDAWN 484



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 172/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R V+ D +TY + +  +C++G ++ A  + ++M+  G+  + VTYN+L+ G C  G 
Sbjct: 209 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                    +MV + I+P   T+N+L+   + E K+ EA+++ KEM  +GI P+ ITYN 
Sbjct: 269 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC      +A ++ D M+     P ++T+TSLI       R+ +  ++F N   +G
Sbjct: 329 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 388

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ + V ++ L+ G C +G I+ A  L +EM    V PD +TY  L+ G C  GK+E+A 
Sbjct: 389 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 448

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +++  +    +        Y  +I+G+CK  + + A  L   +  KG+ P+  TY
Sbjct: 449 EIFEDLQKSKMDLGIV-------MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 501

Query: 301 FSLIEGIASVDKAAESS 317
             +I G+      +E++
Sbjct: 502 TVMISGLCKKGSLSEAN 518



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 142/258 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P+  TY + + G C + RL EA+ ML+ M  N   P  VT+ +LI GYC    
Sbjct: 314 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR 373

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++        + K+G++  A TY++L+       K+  A+++ +EM   G++PD +TY I
Sbjct: 374 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 433

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + +++    +   ++ YT++I  + K  ++ +A  LF +   KG
Sbjct: 434 LLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 493

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +  +I G C  G++  A  LL++M+     P++ TYNTL+    R G +  + 
Sbjct: 494 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 553

Query: 241 RLLDQMKRRGIKPDHISF 258
           +L+++MK  G   D  S 
Sbjct: 554 KLIEEMKSCGFSADASSI 571



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           ++A  + ++M  +  +P+ V ++             +   F  ++   GI     T N++
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 119

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           I+      K   A  +L ++ + G  PD+ T+N LI G    G   +A  L D M+  G 
Sbjct: 120 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           QP ++TY S++  + +      A  L      + +  D+  ++ +ID  C +G I+ A S
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L KEM+   +    VTYN+L+ G C+ GK  +   LL  M  R I P+ I       T+N
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI-------TFN 292

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L+    K  +   A EL +EM+++GI+P+  TY +L++G    ++ +E++N
Sbjct: 293 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 344



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 156/371 (42%), Gaps = 54/371 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  RG+  ++ TY   V G C+ G+++ A  + ++M  +G++P  +TY  L+DG C+ G 
Sbjct: 384 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    +++ K  +      Y  +I  +    K+ +A ++   +  KG+ P+ +TY +
Sbjct: 444 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 503

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G+  +A  L  +M   G  P   TY +LI    +   +  + +L E   + G
Sbjct: 504 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 563

Query: 181 MLPDIVMFNALID-----------GHCTNGNIERAFSLLKEMDRMKVHPDEVTY------ 223
              D      +ID            +C +   +    LL+     K+    +T+      
Sbjct: 564 FSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSEKIRLSSLTFVKMFPC 623

Query: 224 NTLMHG------RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           NT+           R     E  R L +++R  +     + +   L  N L+    ++ E
Sbjct: 624 NTITTSLNVNTIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAE 683

Query: 278 GDL-------------------------------AEELLREMVSKGITPDDNTYFSLIEG 306
            DL                               AEEL +EM+ +GI P+  TY SLI+G
Sbjct: 684 CDLMVDLELPTDAVHYAHRAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDG 743

Query: 307 IASVDKAAESS 317
               ++  E++
Sbjct: 744 FCKENRLDEAN 754



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 137/307 (44%), Gaps = 46/307 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +GV+P+  TY   +SG+CK+G L EA+ +L +M+E+G  P   TYNTLI  +   G+
Sbjct: 489 LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGD 548

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-----------EADDMLKEMGEK 109
           L  +    +EM   G    AS+  ++I  LL   K +              D+L+  G +
Sbjct: 549 LTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSE 608

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            I   S+T+  +      C     + +++       I+   +    L   L K  R    
Sbjct: 609 KIRLSSLTFVKMFP----CNTITTSLNVNT------IEARGMNSAELNRDLRKLRRS-SV 657

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            + F+N   + ++ + ++   L D  C          L+ +++     P +  +     G
Sbjct: 658 LKKFKNRDVRVLVTNELLTWGLEDAEC---------DLMVDLE----LPTDAVHYAHRAG 704

Query: 230 RCRQ-GK---VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           R R+ G+   V  A  L  +M +RGI P+ I       TY++LI G CK    D A ++L
Sbjct: 705 RMRRPGRKMTVVTAEELHKEMIQRGIAPNTI-------TYSSLIDGFCKENRLDEANQML 757

Query: 286 REMVSKG 292
             MV+KG
Sbjct: 758 DLMVTKG 764


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P+  TY S +S +C  GR  +AS++L  M E  + P  VT+N LID +  +G 
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 345

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M+K+ I P   TYN L++   M  ++ +A  M + M  K   PD +TYN 
Sbjct: 346 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 405

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    +    L  EM H+G+    +TYT+LI  L        A ++F+  ++ G
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C NG +E+A  +   M + ++  D   Y T++ G C+ GKV++  
Sbjct: 466 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ +       TYN +I GLC  +    A  LL++M   G  P+  TY
Sbjct: 526 DLFCSLSLKGVKPNVV-------TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 578

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   DKAA +
Sbjct: 579 NTLIRAHLRDGDKAASA 595



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 179/318 (56%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ T+ + + G+    +  EA  ++++M + G  P  VTY  +++G C +G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A +  ++M    I      +N +I  L   R + +A ++ KEM  KGI P+ +TY+ 
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L  +MI K I P ++T+ +LI    K+ + +EA++L+++ + + 
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N+L++G C +  +++A  + + M      PD VTYNTL+ G C+  +VE+  
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RG+  D +       TY  LIQGL  + + D A+++ ++MVS G+ PD  TY
Sbjct: 421 ELFREMSHRGLVGDTV-------TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 473

Query: 301 FSLIEGIAS---VDKAAE 315
             L++G+ +   ++KA E
Sbjct: 474 SILLDGLCNNGKLEKALE 491



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 164/313 (52%), Gaps = 7/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QP+  TYG  V+G+CK G  + A  +L +M+   +    V +NT+ID  C   +
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 275

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM  +GI P   TY+ LI  L    +  +A  +L +M EK I P+ +T+N 
Sbjct: 276 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 335

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  L+D+MI + I P + TY SL+      +R+ +A Q+FE  ++K 
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N LI G C +  +E    L +EM    +  D VTY TL+ G    G  + A+
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 455

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  QM   G+ PD        +TY+ L+ GLC N + + A E+   M    I  D   Y
Sbjct: 456 KVFKQMVSDGVPPD-------IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 508

Query: 301 FSLIEGIASVDKA 313
            ++IEG+    K 
Sbjct: 509 TTMIEGMCKAGKV 521



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 171/325 (52%), Gaps = 28/325 (8%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           YTY   ++  C+  ++  A  +L +M + G  P+ VT ++L++GYC+   +  A +  D+
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           MV+ G  P   T+  LIH L +  K  EA  ++  M ++G  P+ +TY +++NG C+ G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A +L ++M    I+  ++ + ++I  L K   + +A  LF+    KG+ P++V +++
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LI   C+ G    A  LL +M   K++P+ VT+N L+    ++GK  EA +L D M +R 
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360

Query: 251 IKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAE 282
           I PD  ++N                            P  +TYN LI+G CK++  +   
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI 307
           EL REM  +G+  D  TY +LI+G+
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGL 445



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 169/345 (48%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR + P    +   +S + K  + +    + E+M+   +V    TYN LI+ +C +  
Sbjct: 77  VKSRPL-PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQ 135

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A +   +M+K G  P+  T + L++     +++ +A  ++ +M E G  PD+IT+  
Sbjct: 136 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 195

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G      A +A +L D M+ +G QP ++TY  ++  L K+     A  L     A  
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK 255

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+V+FN +ID  C   +++ A +L KEM+   + P+ VTY++L+   C  G+  +A 
Sbjct: 256 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 315

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LL  M  + I P+ ++FN                            P   TYN+L+ G 
Sbjct: 316 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 375

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           C +   D A+++   MVSK   PD  TY +LI+G     +  + +
Sbjct: 376 CMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 129/247 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD +TY S V+G C   RL++A +M E M      P  VTYNTLI G+C    
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM  +G++    TY  LI  L  +     A  + K+M   G+ PD +TY+I
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + D M    I+  +  YT++I  + K  ++ +   LF +   KG
Sbjct: 476 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N +I G C+   ++ A++LLK+M      P+  TYNTL+    R G    + 
Sbjct: 536 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 595

Query: 241 RLLDQMK 247
            L+ +M+
Sbjct: 596 ELIREMR 602



 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 157/316 (49%), Gaps = 28/316 (8%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +L++A  +   M ++  +P+ V +N L+         ++  S  ++M +  I+    TYN
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +LI+      ++  A  +L +M + G  P  +T + L+NGYC       A +L D+M+  
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P  +T+T+LI  L   N+  EA  L +  + +G  P++V +  +++G C  G+ + A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
            +LL +M+  K+  D V +NT++   C+   V++A  L  +M+ +GI+P+ +++      
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                 NP  +T+NALI    K  +   AE+L  +M+ + I PD
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364

Query: 297 DNTYFSLIEGIASVDK 312
             TY SL+ G    D+
Sbjct: 365 IFTYNSLVNGFCMHDR 380



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 135/341 (39%), Gaps = 101/341 (29%)

Query: 17  VSGMCKEGR-LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
           + GMC  GR     S    ++  NGL               +   L+ A      MVK  
Sbjct: 36  LCGMCYWGRAFSSGSGDYREILRNGL---------------HDMKLDDAIGLFGGMVKSR 80

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----GIVPDSITYNILINGYCRCGNA 131
            +P+   +N L+  +   +K     D++  +GEK     IV    TYNILIN +CR    
Sbjct: 81  PLPSIVEFNKLLSAIAKMKKF----DVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQI 136

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
             A +L  +M+  G +                                   P IV  ++L
Sbjct: 137 SLALALLGKMMKLGYE-----------------------------------PSIVTLSSL 161

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G+C    I  A +L+ +M  M   PD +T+ TL+HG     K  EA  L+D+M +RG 
Sbjct: 162 LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC 221

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL-------------------------- 285
           +P+ +       TY  ++ GLCK  + DLA  LL                          
Sbjct: 222 QPNLV-------TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYR 274

Query: 286 ---------REMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
                    +EM +KGI P+  TY SLI  + S  + +++S
Sbjct: 275 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 315



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++ D Y Y + + GMCK G++++   +   +   G+ P  VTYNT+I G C+K  
Sbjct: 496 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 555

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A++   +M + G +P + TYN LI   L +     + ++++EM     V D+ T  +
Sbjct: 556 LQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 615

Query: 121 LIN 123
           + N
Sbjct: 616 VAN 618



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+P+  TY + +SG+C +  L+EA  +L++MKE+G +P + TYNTLI  +   G+   
Sbjct: 534 KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAA 593

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM     +  AST  L+ + L
Sbjct: 594 SAELIREMRSCRFVGDASTIGLVANML 620


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 178/348 (51%), Gaps = 42/348 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV  +  TY   + G    G++EEA R+ E+M+E G+      Y ++I   C  GN
Sbjct: 290 MEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGN 349

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    DEM  +G++P+A TY  LIH +    +M  A  ++ EM  KGI  + + +N 
Sbjct: 350 VKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNT 409

Query: 121 LINGYCRCGNAKKAFSLH----------------------------DE-------MIHKG 145
           LI+GYC  G   +A  L                             DE       M+ +G
Sbjct: 410 LIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 469

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +++T+LI +  K+   +EA ++F     KG +P+I+ +N LIDG+   GN++ A 
Sbjct: 470 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 529

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  E++   + PD  T  +L+HG C  GKV+ A +L D+M +RG+ P+ +       TY
Sbjct: 530 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV-------TY 582

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
            A+I GL K+   + A +L  EM   G+TPDD  Y SL+  + S D++
Sbjct: 583 TAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSADES 630



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+   Y+    + G+CK G +E   ++++++   G+    VTYN  I+GY  + +L    
Sbjct: 225 VEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVA 284

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M K+G+     TY LLIH      K+ EA  + +EM EKGI  D   Y  +I+  
Sbjct: 285 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCN 344

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR GN K+A  L DEM  KG+ P+  TY +LI  + K  +M  A  L      KG+  + 
Sbjct: 345 CRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNP 404

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V+FN LIDG+C +G ++ A  L   M++  +  D   YN++  G C+  + +EA+ LL  
Sbjct: 405 VIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFS 464

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  RG+ P+ +SF         LI   CK      A+ + REM  KG  P+  TY  LI+
Sbjct: 465 MVERGVSPNTMSF-------TTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLID 517

Query: 306 G 306
           G
Sbjct: 518 G 518



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 99/167 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV P++ ++ + +   CKEG   EA R+  +M+E G VP  +TYN LIDGY  +GN
Sbjct: 465 MVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGN 524

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   +DE+  +G++P   T   LIH   ++ K+  A  +  EM ++G+VP+ +TY  
Sbjct: 525 MKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTA 584

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
           +I+G  + G +++AF L+DEM   G+ P    Y+SL+  L   +  I
Sbjct: 585 MISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSADESI 631



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 19/270 (7%)

Query: 38  ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
           ++GL        +L+D  CN+     A  F+++            ++LL       +   
Sbjct: 129 DDGLRVPVTVIASLVDDACNESKCNRA-KFKEKF-----------FDLLFRVYADNKMFG 176

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA +  + M +KG   D  +  + +    R G           M++  ++ T+ + T ++
Sbjct: 177 EALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVL 236

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K+  +    +L +   AKG+  ++V +NA I+G+    ++     +L  M++  V 
Sbjct: 237 DGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVA 296

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
            + VTY  L+HG    GK+EEA+RL ++M+ +GI+ D          Y ++I   C++  
Sbjct: 297 CNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD-------VYVYTSIISCNCRSGN 349

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              A  L  EM  KG+ P  +TY +LI G+
Sbjct: 350 VKRALVLFDEMTDKGLIPSAHTYGALIHGV 379



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 153 YTSLIFVLSKQNRMI-EADQLFENFLAKGMLPD----IVMFNALIDGHCTNGNIERAFSL 207
           +  L+F +   N+M  EA + FE+   KG   D    +V   AL  G    G ++     
Sbjct: 161 FFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRG----GQVDSCLRF 216

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
            + M  + V     +   ++ G C++G VE  R+L+D++  +G+K + +       TYNA
Sbjct: 217 FRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVV-------TYNA 269

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            I+G  K  +     E+L  M  +G+  +  TY  LI G +++ K  E+
Sbjct: 270 FIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEA 318


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 164/309 (53%), Gaps = 42/309 (13%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+  ++ T  + + G+C+ G +EE   +L+QM E GL+   ++YNTLI G C  G +E 
Sbjct: 495 KGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEE 554

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD--------- 114
           AF  ++EMV+Q   P   TYN L+  L    K+ +   +L E  E G VP+         
Sbjct: 555 AFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLE 614

Query: 115 --------------------------SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                     S+ YNILI  YCR GN  +AF L D M  +GI P
Sbjct: 615 GYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILP 674

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T  TY+SLI  +    R+ EA ++FE    +G+LP++  + ALI GHC  G ++   S+L
Sbjct: 675 TCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSIL 734

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            EM    + P+++TY  ++ G C+ G ++EAR LL++M R GI PD +       TYNAL
Sbjct: 735 LEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTV-------TYNAL 787

Query: 269 IQGLCKNQE 277
            +G CK +E
Sbjct: 788 QKGYCKERE 796



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 173/348 (49%), Gaps = 43/348 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +GV PD +T+ + ++  CK GR+ +A  +  +M+  G+ P  VTYN +IDG    G 
Sbjct: 246 LACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGR 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A  F+D MV+  + P+  TY +LI  L+      EA+++L EM   G  P+ + +N 
Sbjct: 306 FEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNA 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR G+  +A  + DEM  KG++P  +T+ +L+    + N+M +A+Q+    L+ G
Sbjct: 366 LIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSG 425

Query: 181 MLPDI-----------------------------------VMFNALIDGHCTNGNIERAF 205
           +  ++                                    +   L+ G C       A 
Sbjct: 426 LSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAI 485

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            L  ++  +K +  + VT N L+HG C +G +EE   +L QM  +G+  D       R++
Sbjct: 486 ELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLD-------RIS 538

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           YN LI G CK  + + A +L  EMV +   PD  TY  L++G+A + K
Sbjct: 539 YNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGK 586



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 148/302 (49%), Gaps = 8/302 (2%)

Query: 16  FVSGMCK-EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
            V G+CK EG  E      +     GL    VT N L+ G C +GN+E  F    +M+++
Sbjct: 471 LVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEK 530

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G++    +YN LI       K+ EA  + +EM ++   PD+ TYN L+ G    G     
Sbjct: 531 GLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDV 590

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
             L  E    G  P + TY  L+    K +R+ +A + F+N   + +    V++N LI  
Sbjct: 591 HRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAA 650

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           +C  GN+  AF L   M    + P   TY++L+HG C  G+V+EA+ + ++M+  G+ P+
Sbjct: 651 YCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPN 710

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
                     Y ALI G CK  + D+   +L EM S GI P+  TY  +I+G   +    
Sbjct: 711 -------VFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMK 763

Query: 315 ES 316
           E+
Sbjct: 764 EA 765



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 123/233 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  QPD+YTY   + G+   G++++  R+L + KE G VP   TY  L++GYC    
Sbjct: 562 MVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADR 621

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F   +  + +  ++  YN+LI        + EA  +   M  +GI+P   TY+ 
Sbjct: 622 IEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSS 681

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G   +A  + +EM ++G+ P +  YT+LI    K  +M     +     + G
Sbjct: 682 LIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNG 741

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           + P+ + +  +IDG+C  GN++ A  LL EM R  + PD VTYN L  G C++
Sbjct: 742 IRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCKE 794



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 138/281 (49%), Gaps = 8/281 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
             + G+ P   T N L+        L  ++   D +  QG+ P   T+   I+      +
Sbjct: 212 FSKRGVFPCLKTCNLLLSSLVKANELHKSYEVFD-LACQGVAPDVFTFTTAINAFCKGGR 270

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           + +A D+  +M   G+ P+ +TYN +I+G  + G  ++A    D M+   + P+++TY  
Sbjct: 271 VGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGV 330

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           LI  L K     EA+++     + G  P+ V+FNALIDG+C  G++  A  +  EM    
Sbjct: 331 LISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKG 390

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           + P+ VT+NTL+ G CR  ++E+A ++L  +   G     +S N    +Y  +I  L + 
Sbjct: 391 MKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSG-----LSVNMDVCSY--VIHRLMER 443

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                A +++ +++S  I   D+    L+ G+   +  +E+
Sbjct: 444 SGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEA 484



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 26/301 (8%)

Query: 32  MLEQMKENGLVPTA-VTYNTLIDGYCNKGNLEMAFSFRDEM---------VKQGI-MPTA 80
           +L  +  +  VP A      LIDG+    + +   SF D +         + QG      
Sbjct: 124 LLRSLLADSFVPRARFLLARLIDGHVPTWSSKTTTSFHDRLREIASSMLELNQGSDEQRL 183

Query: 81  STYNLLIHELLMERKMVE---ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
              +LL+H L  + K +    A D+     ++G+ P   T N+L++   +     K++ +
Sbjct: 184 GELDLLLHILCSQFKCLGSRCAFDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHKSYEV 243

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
            D +  +G+ P + T+T+ I    K  R+ +A  LF      G+ P++V +N +IDG   
Sbjct: 244 FD-LACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFK 302

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           +G  E A      M R KV+P  VTY  L+ G  +    EEA  +L +M   G       
Sbjct: 303 SGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMG------- 355

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEEL-LR-EMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           F P  + +NALI G C+  +GD+ E L +R EM  KG+ P+  T+ +L++G    ++  +
Sbjct: 356 FAPNEVVFNALIDGYCR--KGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQ 413

Query: 316 S 316
           +
Sbjct: 414 A 414


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 176/315 (55%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG++P + ++ + ++G+CK   L+E  R+ + M+EN + P   TY+ LI G C +G 
Sbjct: 249 IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A    DEM ++G+ P   T+  LI      R++  A +   +M   G+ PD + YN 
Sbjct: 309 LDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNT 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G+  KA  L DEM   G++P  +TYT+LI    K+  +  A ++ +    +G
Sbjct: 369 LLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEG 428

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D V F ALI G C +G +  A   L+EM    + PD+ TY  ++ G C++G V+   
Sbjct: 429 VVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGF 488

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL +M+  G KP  I       TYN L+ GLCK  +   A  LL  M++ G+TPDD TY
Sbjct: 489 KLLKEMQINGHKPGVI-------TYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY 541

Query: 301 FSLIEGIASVDKAAE 315
             L+EG     KA +
Sbjct: 542 NILLEGHCKNGKAED 556



 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 169/305 (55%), Gaps = 10/305 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + PD +TY   + G+CKEGRL+ A ++ ++M++ GL P  +T+  LIDG C    
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRR 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +M+  G+ P    YN L++ L     + +A  ++ EM   G+ PD ITY  
Sbjct: 344 IDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTT 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G+ + A  +   M  +G+    + +T+LI    +  R+ +A++     +  G
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD   +  +IDG+C  GN++  F LLKEM      P  +TYN LM+G C+QG+++ A 
Sbjct: 464 MKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNAN 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M   G+ PD I       TYN L++G CKN +   AE+LL+    KG+  D   Y
Sbjct: 524 MLLEAMLNLGVTPDDI-------TYNILLEGHCKNGK---AEDLLKLRNEKGLIVDYAYY 573

Query: 301 FSLIE 305
            SL+ 
Sbjct: 574 TSLVS 578



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 97/273 (35%), Positives = 153/273 (56%), Gaps = 7/273 (2%)

Query: 34  EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
            ++ E G  P    YN LI+ +C +G++  A    +E+ K+G+ PT  ++N LI+ L   
Sbjct: 212 SEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKS 271

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           R + E   + K M E  I PD  TY++LI+G C+ G    A  L DEM  +G++P  +T+
Sbjct: 272 RNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITF 331

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           T+LI    +  R+  A   +   L  G+ PD+VM+N L++G C  G++ +A  L+ EM  
Sbjct: 332 TALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRM 391

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
           + + PD++TY TL+ G C++G +E A  +   M   G+  D+++F        ALI G C
Sbjct: 392 VGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAF-------TALISGFC 444

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           ++     AE  LREMV  G+ PDD TY  +I+G
Sbjct: 445 RDGRVRDAERTLREMVEAGMKPDDATYTMVIDG 477



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 32/157 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  D+  + + +SG C++GR+ +A R L +M E G+ P   TY  +IDGYC KGN
Sbjct: 424 MNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGN 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV----------------------- 97
           ++M F    EM   G  P   TYN+L++ L  + +M                        
Sbjct: 484 VKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNI 543

Query: 98  ---------EADDMLKEMGEKGIVPDSITYNILINGY 125
                    +A+D+LK   EKG++ D   Y  L++ Y
Sbjct: 544 LLEGHCKNGKAEDLLKLRNEKGLIVDYAYYTSLVSEY 580


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 111/313 (35%), Positives = 168/313 (53%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD  T+ S V+G C+ G + +A  +++ M E G  P   TYN+LI G C  G  E A
Sbjct: 258 GFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKA 317

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M+ +   P   TYN LI  L  E ++  A D+ + +  KG++PD  T+N LI G
Sbjct: 318 IEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQG 377

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C   N   A  + +EM +KG +P   TY+ LI  L  + R+ EA  L +   + G   +
Sbjct: 378 LCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARN 437

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V++N LIDG C +  IE A  +  +M+ + V    VTYNTL+ G C+  +VEEA +L+D
Sbjct: 438 AVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMD 497

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G+KPD       + TYN+L+   C+  + + A ++++ M S G  PD  TY +LI
Sbjct: 498 QMIMEGLKPD-------KFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLI 550

Query: 305 EGIASVDKAAESS 317
            G+    +   +S
Sbjct: 551 GGLCRAGRVDVAS 563



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 173/317 (54%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++PD  T+ + + G  +EG L  A +M +QM   G + T V+   L++G+C +G 
Sbjct: 184 MANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F  E+ ++G  P   T+N L++       + +A D++  M EKG  PD  TYN 
Sbjct: 244 VEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNS 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  +KA  +  +MI +   P  +TY +LI  L K+N +  A  L    ++KG
Sbjct: 304 LISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+  FN LI G C + N + A  + +EM      PDE TY+ L+   C + +++EA 
Sbjct: 364 LLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEAL 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M+  G   + +        YN LI GLCK++  + AEE+  +M   G++    TY
Sbjct: 424 MLLKEMESSGCARNAV-------VYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTY 476

Query: 301 FSLIEGIASVDKAAESS 317
            +LI+G+    +  E+S
Sbjct: 477 NTLIDGLCKNKRVEEAS 493



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 181/375 (48%), Gaps = 66/375 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--------------------KEN- 39
           M  +G  PD YTY S +SGMCK G  E+A  +L+QM                    KEN 
Sbjct: 289 MIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENE 348

Query: 40  --------------GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                         GL+P   T+NTLI G C   N ++A    +EM  +G  P   TY++
Sbjct: 349 IEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSI 408

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L  ER++ EA  +LKEM   G   +++ YN LI+G C+    + A  + D+M   G
Sbjct: 409 LIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLG 468

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +  + +TY +LI  L K  R+ EA QL +  + +G+ PD   +N+L+   C  G+IE+A 
Sbjct: 469 VSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAG 528

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT---- 261
            +++ M      PD  TY TL+ G CR G+V+ A +LL  ++ +GI     ++NP     
Sbjct: 529 DIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQAL 588

Query: 262 ------------------------RLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITP 295
                                    LT+  + +GLC N  G + E  +   EM+ KGI P
Sbjct: 589 FMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLC-NGGGPIQEAIDFTVEMLEKGILP 647

Query: 296 DDNTYFSLIEGIASV 310
           +  ++  L EG+ S+
Sbjct: 648 EFPSFGFLAEGLCSL 662



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 155/308 (50%), Gaps = 9/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS G  P++ T+ + +        +E   ++LE   E G  P    YN  ++       
Sbjct: 81  LKSSGSIPNATTFATLIQSFTNFHEIENLLKILEN--ELGFKPDTNFYNIALNALVEDNK 138

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++      +MV +GI+   ST+N+LI  L    ++  A  ML+EM   G+ PD IT+  
Sbjct: 139 LKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTT 198

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+   G+   A  +  +M+  G   T ++   L+    K+ R+ EA +       +G
Sbjct: 199 LMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEG 258

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V FN+L++G C  GN+  A  ++  M      PD  TYN+L+ G C+ G+ E+A 
Sbjct: 259 FSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAI 318

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L QM  R   P+ +       TYN LI  LCK  E + A +L R +VSKG+ PD  T+
Sbjct: 319 EILQQMILRECSPNTV-------TYNTLISALCKENEIEAATDLARILVSKGLLPDVCTF 371

Query: 301 FSLIEGIA 308
            +LI+G+ 
Sbjct: 372 NTLIQGLC 379



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 156/304 (51%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+  Y   ++ + ++ +L+    +  +M   G+V    T+N LI   C    L  A
Sbjct: 118 GFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPA 177

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM   G+ P   T+  L+   + E  +  A  M K+M   G +  +++  +L+NG
Sbjct: 178 ILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNG 237

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G  ++A     E+  +G  P  +T+ SL+    +   + +A  + +  + KG  PD
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPD 297

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N+LI G C  G  E+A  +L++M   +  P+ VTYNTL+   C++ ++E A  L  
Sbjct: 298 VYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLAR 357

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +  +G+ PD         T+N LIQGLC ++  D+A E+  EM +KG  PD+ TY  LI
Sbjct: 358 ILVSKGLLPD-------VCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILI 410

Query: 305 EGIA 308
           + + 
Sbjct: 411 DSLC 414



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 155/313 (49%), Gaps = 10/313 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G +PD +TY   +  +C E RL+EA  +L++M+ +G    AV YNTLIDG C    
Sbjct: 394 MKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRR 453

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D+M   G+  ++ TYN LI  L   +++ EA  ++ +M  +G+ PD  TYN 
Sbjct: 454 IEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNS 513

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  +CR G+ +KA  +   M   G +P + TY +LI  L +  R+  A +L  +   KG
Sbjct: 514 LLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKG 573

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           ++     +N +I         +    L +EM      PD +T+  +  G C   G ++EA
Sbjct: 574 IVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEA 633

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
                +M  +GI P+  SF         L +GLC     D   EL+  ++ K    +  T
Sbjct: 634 IDFTVEMLEKGILPEFPSF-------GFLAEGLCSLSMEDTLIELINMVMEKAQMSERET 686

Query: 300 YFSLIEGIASVDK 312
             S+I G   + K
Sbjct: 687 --SMIRGFLKIRK 697


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 171/312 (54%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  T GS V+G C+  R+ +A  ++++M E G  P  V YN +ID  C    +  A
Sbjct: 150 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDA 209

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F F  E+ ++GI P   TY  L++ L    +  +A  +L +M +K I P+ ITY+ L++ 
Sbjct: 210 FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G   +A  L +EM+   I P ++TY+SLI  L   +R+ EA+Q+F+  ++KG L D
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 329

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LI+G C    +E    L +EM +  +  + VTYNTL+ G  + G V++A+    
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 389

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   GI PD         TYN L+ GLC N E + A  +  +M  + +  D  TY ++I
Sbjct: 390 QMDFFGISPDI-------WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442

Query: 305 EGIASVDKAAES 316
            G+    K  E+
Sbjct: 443 RGMCKTGKVEEA 454



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 167/315 (53%), Gaps = 20/315 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +G++P+  TY + V+G+C   R  +A+R+L  M +  + P  +TY+ L+D +   G 
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EMV+  I P   TY+ LI+ L +  ++ EA+ M   M  KG + D ++YN 
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 335

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+    +    L  EM  +G+    +TY +LI    +   + +A + F      G
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N L+ G C NG +E+A  + ++M + ++  D VTY T++ G C+ GKVEEA 
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 455

Query: 241 RLLDQMKRRGIKPDHISFNP------------------TRLTYNALIQGLCKNQEGD--L 280
            L   +  +G+KPD +++                    T++    L++  C   +GD  L
Sbjct: 456 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITL 515

Query: 281 AEELLREMVSKGITP 295
           + EL+++M+S G  P
Sbjct: 516 SAELIKKMLSCGYAP 530



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 167/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++ D YT+   ++  C   ++  A  +L +M + G  P  VT  +L++G+C +  
Sbjct: 111 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 170

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  D+MV+ G  P    YN +I  L   +++ +A D  KE+  KGI P+ +TY  
Sbjct: 171 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C       A  L  +MI K I P ++TY++L+    K  +++EA +LFE  +   
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +++LI+G C +  I+ A  +   M       D V+YNTL++G C+  +VE+  
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M +RG+  + +       TYN LIQG  +  + D A+E   +M   GI+PD  TY
Sbjct: 351 KLFREMSQRGLVSNTV-------TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 403

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 404 NILLGGLC 411



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 166/318 (52%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR   P    +   +S + K  + +    + ++M+  G+     T+N +I+ +C    
Sbjct: 77  VKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQ 135

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A S   +M+K G  P   T   L++      ++ +A  ++ +M E G  PD + YN 
Sbjct: 136 VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 195

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+      AF    E+  KGI+P ++TYT+L+  L   +R  +A +L  + + K 
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ ++AL+D    NG +  A  L +EM RM + PD VTY++L++G C   +++EA 
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +G   D +S       YN LI G CK +  +   +L REM  +G+  +  TY
Sbjct: 316 QMFDLMVSKGCLADVVS-------YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTY 368

Query: 301 FSLIEGI---ASVDKAAE 315
            +LI+G      VDKA E
Sbjct: 369 NTLIQGFFQAGDVDKAQE 386



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 131/254 (51%), Gaps = 7/254 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +MVK    P+   +N L+  ++  +K      + K+M   GI  D  T+NI+IN
Sbjct: 69  AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +C C     A S+  +M+  G +P  +T  SL+    ++NR+ +A  L +  +  G  P
Sbjct: 129 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKP 188

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DIV +NA+ID  C    +  AF   KE++R  + P+ VTY  L++G C   +  +A RLL
Sbjct: 189 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 248

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M ++ I P+ I       TY+AL+    KN +   A+EL  EMV   I PD  TY SL
Sbjct: 249 SDMIKKKITPNVI-------TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 304 IEGIASVDKAAESS 317
           I G+   D+  E++
Sbjct: 302 INGLCLHDRIDEAN 315



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 42/185 (22%)

Query: 168 EADQLFENFLAKGMLPDIVMFNAL-----------------------------------I 192
           +A  LF + +     P IV FN L                                   I
Sbjct: 68  DAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVI 127

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +  C    +  A S+L +M ++   PD VT  +L++G CR+ +V +A  L+D+M   G K
Sbjct: 128 NCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYK 187

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           PD ++       YNA+I  LCK +  + A +  +E+  KGI P+  TY +L+ G+ +  +
Sbjct: 188 PDIVA-------YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query: 313 AAESS 317
            ++++
Sbjct: 241 WSDAA 245


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ PD  TY   +  +CK G+  EA ++   M   G+ P    Y  L+ GY  +G 
Sbjct: 365 MYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGA 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       D MV  GI P    +N+++     +  + EA  +   M + G+ PD +TY I
Sbjct: 425 IADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGI 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++MI+ G+ P  + + SL++ L   +R  +A++LF     +G
Sbjct: 485 LIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQG 544

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V FN ++   C  G +  A  L+  M+R+ V P+ ++YNTL+ G C  G+ +EA 
Sbjct: 545 VRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAA 604

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD M   G+KPD IS       Y+ L++G CK    D A  L REM+ KG+TP   TY
Sbjct: 605 QLLDVMVSVGLKPDLIS-------YDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTY 657

Query: 301 FSLIEGIASVDKAAES 316
            ++++G+    + +E+
Sbjct: 658 STILQGLFHTRRFSEA 673



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+ D  TY + + G+CK   ++ A  +L+ M + G+ P  VTYNT+IDG C    
Sbjct: 225 MIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQA 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M+ +G+ P   TYN +I  L   + +  AD +L+ M +K + PD  TYN 
Sbjct: 285 VDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNC 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY   G  K+     +EM  +G+ P ++TY+ L+  L K  +  EA ++F   + KG
Sbjct: 345 LIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++ ++  L+ G+   G I     LL  M    + P+   +N ++    ++  ++EA 
Sbjct: 405 IKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAM 464

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M + G+ PD +       TY  LI  LCK    D A     +M++ G+TP+   +
Sbjct: 465 HIFSRMSQHGLSPDVV-------TYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVF 517

Query: 301 FSLIEGIASVDKAAES 316
            SL+ G+ +VD+  ++
Sbjct: 518 NSLVYGLCTVDRWEKA 533



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 166/309 (53%), Gaps = 15/309 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG---LVPTAVTYNTLIDGYCN 57
           M   G  P+  +  + + G+C E R+EEA  +L  M E+G     P  VTYNT+IDG C 
Sbjct: 152 MPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCK 211

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
              ++ A      M+ +G+     TY+ +I  L   + +  A+ +L+ M +KG+ PD +T
Sbjct: 212 AQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVT 271

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN +I+G C+     +A  +   MI KG++P ++TY ++I  L K   +  AD + ++ +
Sbjct: 272 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI 331

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            K + PDI  +N LI G+ + G  +     L+EM    + PD VTY+ L+   C+ GK  
Sbjct: 332 DKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCT 391

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITP 295
           EAR++   M R+GIKP     N T   Y  L+ G      G +A+  +LL  MV+ GI+P
Sbjct: 392 EARKIFYCMIRKGIKP-----NVT--IYGILLHGYA--ARGAIADLTDLLDLMVANGISP 442

Query: 296 DDNTYFSLI 304
            +N  F+++
Sbjct: 443 -NNYIFNIV 450



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 161/305 (52%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P++Y +   +    K+  ++EA  +  +M ++GL P  VTY  LID  C  G 
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGR 494

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+  G+ P +  +N L++ L    +  +A+++  EM ++G+ P+ + +N 
Sbjct: 495 VDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNT 554

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C  G    A  L D M   G++P +++Y +LI       R  EA QL +  ++ G
Sbjct: 555 IMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVG 614

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ ++ L+ G+C  G I+ A+ L +EM R  V P  VTY+T++ G     +  EA+
Sbjct: 615 LKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAK 674

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M + G + D         TYN ++ GLCK    D A ++ + + SK + P+  T+
Sbjct: 675 ELYLNMIKSGQQWDI-------YTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITF 727

Query: 301 FSLIE 305
             +I+
Sbjct: 728 TIMID 732



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 158/318 (49%), Gaps = 11/318 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S  V+PD  TY       C+ GR+E        + + G     V  N L++G C+   ++
Sbjct: 83  SNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVD 142

Query: 63  MAFS-FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---IVPDSITY 118
            A       M + G MP   + N L+  L  E+++ EA ++L  M E G     P+ +TY
Sbjct: 143 EAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTY 202

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +I+G C+     +A  +   MI KG++  ++TY+++I  L K   +  A+ + ++ + 
Sbjct: 203 NTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMID 262

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG+ PD+V +N +IDG C    ++RA  +L+ M    V PD VTYNT++ G C+   V+ 
Sbjct: 263 KGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDR 322

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  +L  M  + +KPD         TYN LI G     E       L EM ++G+ PD  
Sbjct: 323 ADGVLQHMIDKDVKPDI-------QTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVV 375

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  L++ +    K  E+
Sbjct: 376 TYSLLLDYLCKNGKCTEA 393



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 153/307 (49%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+S  + S V G+C   R E+A  +  +M + G+ P  V +NT++   CN+G 
Sbjct: 505 MINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQ 564

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    D M + G+ P   +YN LI    +  +  EA  +L  M   G+ PD I+Y+ 
Sbjct: 565 VMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDT 624

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC+ G    A+ L  EM+ KG+ P  +TY++++  L    R  EA +L+ N +  G
Sbjct: 625 LLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG 684

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              DI  +N +++G C    ++ AF + + +    + P+ +T+  ++    + G+ ++A 
Sbjct: 685 QQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAM 744

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +   G+ P+ +       TY  +++ + +    D  + L   M   G TPD    
Sbjct: 745 DLFASIPSHGLVPNVV-------TYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVML 797

Query: 301 FSLIEGI 307
            ++I  +
Sbjct: 798 NAIIRSL 804



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 150/284 (52%), Gaps = 7/284 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P+  +Y + + G C  GR +EA+++L+ M   GL P  ++Y+TL+ GYC  G 
Sbjct: 575 MERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGR 634

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EM+++G+ P A TY+ ++  L   R+  EA ++   M + G   D  TYNI
Sbjct: 635 IDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNI 694

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+     +AF +   +  K ++P ++T+T +I VL K  R  +A  LF +  + G
Sbjct: 695 ILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHG 754

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V +  ++      G ++   +L   M++    PD V  N ++     +G++  A 
Sbjct: 755 LVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAG 814

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
             L ++       D ++F+    T + LI    + +  + A+ L
Sbjct: 815 AYLSKI-------DEMNFSLEASTTSLLISLFSREEYKNHAKSL 851



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 79/177 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G Q D YTY   ++G+CK   ++EA ++ + +    L P  +T+  +ID     G 
Sbjct: 680 MIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGR 739

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A      +   G++P   TY +++  ++ E  + E D++   M + G  PDS+  N 
Sbjct: 740 KKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNA 799

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +I      G   +A +   ++          T + LI + S++     A  L E +L
Sbjct: 800 IIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNHAKSLPEKYL 856


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 177/309 (57%), Gaps = 7/309 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV   +YT    ++G+CK+G++ +A ++LE +   GLVPT   YNTLI+GYC   +L+ 
Sbjct: 329 KGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQG 388

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AFS  ++M  + I P   TYN LI+ L     + EA+D++ EM + G+ P   T+N LI+
Sbjct: 389 AFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLID 448

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            Y R G  +K F++  +M  KGI+  ++++ S++    K  ++ EA  + ++ + K ++P
Sbjct: 449 AYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVP 508

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +  ++N++ID +  +G  E+AF L+++M    V     TYN L+ G C+  +++EA  L+
Sbjct: 509 NAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELI 568

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +  +G++PD +S       YN +I   C   + D A ELL+EM    I P   TY  L
Sbjct: 569 YNLTNQGLRPDVVS-------YNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPL 621

Query: 304 IEGIASVDK 312
           +  + S  +
Sbjct: 622 LSALGSAGR 630



 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 176/327 (53%), Gaps = 28/327 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+++Y   ++G+ + G+  +A ++ ++M + G+ P  +TYNT+IDG+   G+LE  F  
Sbjct: 193 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRL 252

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RD+M++ G  P   TYN+L+  L    +M E   ++ EM    ++PD  TY+IL +G  R
Sbjct: 253 RDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTR 312

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+++   SL  E + KG+     T + L+  L K  ++ +A+Q+ E  +  G++P   +
Sbjct: 313 TGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAI 372

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C   +++ AFS+ ++M    + PD +TYN L++G C+   + EA  L+ +M+
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEME 432

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           + G+ P   +FN                               +++ ++++  CKN +  
Sbjct: 433 KSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIP 492

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG 306
            A  +L +M+ K + P+   Y S+I+ 
Sbjct: 493 EAVAILDDMIHKDVVPNAQVYNSIIDA 519



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 181/346 (52%), Gaps = 31/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+  TY   +SG+C+ GR++E   ++++M    ++P   TY+ L DG    G+
Sbjct: 256 MLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGD 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                S   E +K+G++  A T ++L++ L  + K+ +A+ +L+ +   G+VP +  YN 
Sbjct: 316 SRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNT 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+  + + AFS+ ++M  + I+P  +TY +LI  L K   + EA+ L       G
Sbjct: 376 LINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  FN LID +   G +E+ F++L +M    +  + +++ +++   C+ GK+ EA 
Sbjct: 436 VDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAV 495

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LD M  + + P+   +N                             +  TYN L++GL
Sbjct: 496 AILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGL 555

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           CKN + D AEEL+  + ++G+ PD  +Y ++I    +    D+A E
Sbjct: 556 CKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALE 601



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 157/298 (52%), Gaps = 13/298 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+CK   + EA  ++ +M+++G+ P+  T+NTLID Y   G 
Sbjct: 396 MKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQ 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F+   +M  +GI     ++  ++       K+ EA  +L +M  K +VP++  YN 
Sbjct: 456 LEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNS 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G  ++AF L ++M   G+  ++ TY  L+  L K +++ EA++L  N   +G
Sbjct: 516 IIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQG 575

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I   C  G+ +RA  LL+EM +  + P   TY+ L+      G+V +  
Sbjct: 576 LRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDME 635

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            L   M  + ++P   S   TR          C+N+       L +EM  KGI  DD 
Sbjct: 636 CLYQHMVHKNVEPSS-SIYGTR----------CENESK--VASLKKEMSEKGIAFDDT 680



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 40/318 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + G +PD++ +   V      G L+EA  ML +M  +   P                 
Sbjct: 149 LVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPP---------------- 192

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                            P A +YN++I  L    K  +A  +  EM ++G+ P+ ITYN 
Sbjct: 193 -----------------PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNT 235

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G+ +  F L D+M+  G +P ++TY  L+  L +  RM E   L +   +  
Sbjct: 236 MIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYS 295

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           MLPD   ++ L DG    G+     SL  E  +  V     T + L++G C+ GKV +A 
Sbjct: 296 MLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAE 355

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++L+ +        H    PT   YN LI G C+ ++   A  +  +M S+ I PD  TY
Sbjct: 356 QVLEMLV-------HTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITY 408

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI G+  ++   E+ +
Sbjct: 409 NALINGLCKMEMITEAED 426


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 170/304 (55%), Gaps = 11/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G   ++ TY   + G+C  G +E+A  + E+M + G +PT VTYNTLI+GY  KGN
Sbjct: 399 MEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGN 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M + G  P   TYN L+       K+  A    +EM E G+ P+ ++Y  
Sbjct: 459 VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTA 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G    A SL   M   G  P + +Y ++I  LSK+NR  EA+++ +  + +G
Sbjct: 519 LIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQG 578

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+++ +  LIDG C NG  + AF +  +M++ K  P+  TY++L++G C++GK +EA 
Sbjct: 579 LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE 638

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+             I   PT  TY+ L+ GLC+      AE+L+++M  +G  PD   Y
Sbjct: 639 RM-----------SEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIY 687

Query: 301 FSLI 304
           +SL+
Sbjct: 688 YSLL 691



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG +P+  TY + +SG+ + G+LE A  +  +M + GLVP  VTYN LI+  C  G 
Sbjct: 329 MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M   G +    TYN +I  L +   + +A  + ++M + G +P  +TYN 
Sbjct: 389 FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY   GN   A  L D M   G +P   TY  L+   SK  ++  A   F+  +  G
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V + ALIDGH  +G ++ A SLLK M+ M  +P+  +YN +++G  ++ +  EA 
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAE 568

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D+M  +G+ P+ I       TY  LI GLC+N     A ++  +M  +   P+  TY
Sbjct: 569 KICDKMVEQGLLPNVI-------TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTY 621

Query: 301 FSLIEGIASVDKAAES 316
            SLI G+    KA E+
Sbjct: 622 SSLIYGLCQEGKADEA 637



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 191/379 (50%), Gaps = 63/379 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+QP   T+ + ++ + K+G++ EA  +L Q+ +  L P   TY +LI G+C   N
Sbjct: 189 MLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRN 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++AF   D MVK+G  P + TY+ LI+ L  E ++ EA DML+EM EKGI P   TY +
Sbjct: 249 LDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTL 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C   + ++A  L   M  +G +P + TYT+LI  LS+  ++  A  L+   L +G
Sbjct: 309 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEG 368

Query: 181 MLPDIVMFNALI-------------------DGH----------------CTNGNIERAF 205
           ++P+ V +NALI                   +GH                C  G+IE+A 
Sbjct: 369 LVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM 428

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
            L ++M +M   P  VTYNTL++G   +G V  A RLLD MK  G +PD  ++       
Sbjct: 429 VLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGF 488

Query: 259 ---------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                NP  ++Y ALI G  K+ + D+A  LL+ M   G  P+ 
Sbjct: 489 SKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNV 548

Query: 298 NTYFSLIEGIASVDKAAES 316
            +Y ++I G++  ++ +E+
Sbjct: 549 ESYNAVINGLSKENRFSEA 567



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 170/347 (48%), Gaps = 38/347 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +PD +TY   VSG  K G+LE AS   ++M E GL P  V+Y  LIDG+   G 
Sbjct: 469 MKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGK 528

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A S    M + G  P   +YN +I+ L  E +  EA+ +  +M E+G++P+ ITY  
Sbjct: 529 VDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTT 588

Query: 121 LINGYCRCGNAKKAFSL-HD------------------------------EMIHKGIQPT 149
           LI+G CR G  + AF + HD                               M   G +PT
Sbjct: 589 LIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEPT 648

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + TY++L+  L ++ R  EA+QL ++   +G  PD  ++ +L+  HC N  ++ A  +  
Sbjct: 649 LDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFH 708

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            ++          Y  L+   C+ G+VEEA+ L D M  +        +N   + +  L+
Sbjct: 709 SIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEK-------EWNADEIVWTVLV 761

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            GL K  E DL  +LL  M SK  TP+  TY  L   ++ + K+ ES
Sbjct: 762 DGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIES 808



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 127/278 (45%), Gaps = 31/278 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+  +Y + ++G+ KE R  EA ++ ++M E GL+P  +TY TLIDG C  G 
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGR 598

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK------------------------- 95
            + AF    +M K+  +P   TY+ LI+ L  E K                         
Sbjct: 599 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSG 658

Query: 96  ------MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
                   EA+ ++K+M E+G  PD   Y  L+  +C+      A  +   +  KG Q  
Sbjct: 659 LCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLH 718

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           +  Y +LI  L K  ++ EA  LF+N L K    D +++  L+DG    G ++    LL 
Sbjct: 719 LSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLH 778

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            M+     P+  TY  L     R GK  E+  L D++K
Sbjct: 779 IMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLK 816



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 134/256 (52%), Gaps = 8/256 (3%)

Query: 58  KGNLEMAFSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           K N+    S  + +V+  +  P      L+I     E ++    D L E+   G      
Sbjct: 105 KHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLY 164

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           + N L+    +    + A +L+ +M++ GIQP++LT+ +LI +LSK+ ++ EA+ +    
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
               + PD+  + +LI GHC N N++ AF +   M +    P+ VTY+TL++G C +G+V
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +EA  +L++M  +GI+       PT  TY   I  LC  +  + A EL+  M  +G  P+
Sbjct: 285 DEALDMLEEMIEKGIE-------PTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPN 337

Query: 297 DNTYFSLIEGIASVDK 312
             TY +LI G++ + K
Sbjct: 338 VQTYTALISGLSRLGK 353



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 140/293 (47%), Gaps = 11/293 (3%)

Query: 20  MCKEGRLEEASR----MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
           M K  R EE  R     L ++   G   +  + NTL+        +E A +   +M+  G
Sbjct: 134 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 193

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I P+  T+N LI+ L  + K+ EA+ +L ++ +  + PD  TY  LI G+CR  N   AF
Sbjct: 194 IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAF 253

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            + D M+ +G  P  +TY++LI  L  + R+ EA  + E  + KG+ P +  +   I   
Sbjct: 254 GVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 313

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C   + E A  L+  M +    P+  TY  L+ G  R GK+E A  L  +M + G+ P+ 
Sbjct: 314 CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNT 373

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +       TYNALI  LC       A ++   M   G   +  TY  +I+G+ 
Sbjct: 374 V-------TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLC 419


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PDS+ Y SFV G C+ G L  A R+   M   G V TA TY  L+ G C  G +  A
Sbjct: 102 GFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREA 161

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S    M   G  P    Y  ++H L    +  EA+ +L +   +G  P+ + YN LI+G
Sbjct: 162 MSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDG 221

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G+ + A  + + M   G  P + TYT LI    K  ++  A  LF   +  G++P+
Sbjct: 222 YCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPN 281

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + ALI G C++G ++ A+ LL+ M+   + P+E T + L+   C+  +V EA+ LL 
Sbjct: 282 VVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLG 341

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + ++GIK + I        Y +LI GLCK      A+ L++ +VS+G  PD +TY SLI
Sbjct: 342 SLIQKGIKVNEI-------VYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLI 394

Query: 305 EGIASVDKAAES 316
           +G+    + +E+
Sbjct: 395 DGLCRQKELSEA 406



 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 153/300 (51%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  PD + Y + V G+C  GR  EA  +L      G  P  V YN LIDGYCN G+
Sbjct: 168 MQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGD 227

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE+A    + M   G  P   TY  LI      RK+  A  +   M + G+VP+ +TY  
Sbjct: 228 LELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTA 287

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G    A+ L   M + G+ P   T + LI  L K  R+ EA  L  + + KG
Sbjct: 288 LIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKG 347

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + +++ +LIDG C  G    A  L++ +      PD  TY++L+ G CRQ ++ EA 
Sbjct: 348 IKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAM 407

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LD M  +G++P  +       TY  +I  L +    D ++++L +M++ GI PD  TY
Sbjct: 408 LVLDDMMEKGVQPSPV-------TYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTY 460



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 148/304 (48%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY   +SG CK  +L+ A  +  +M + GLVP  VTY  LI G C+ G 
Sbjct: 238 MDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQ 297

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+     M   G++P   T ++LI  L    ++ EA  +L  + +KGI  + I Y  
Sbjct: 298 LDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTS 357

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L   ++ +G  P   TY+SLI  L +Q  + EA  + ++ + KG
Sbjct: 358 LIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKG 417

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  +ID        + +  +L +M    + PD  TY   +   C +G++E+A 
Sbjct: 418 VQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAE 477

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++  M   G+ P+ +       TYNALI G         A    + MV+ G  P++ +Y
Sbjct: 478 HMMLHMVDHGVCPNLV-------TYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESY 530

Query: 301 FSLI 304
             L+
Sbjct: 531 TVLL 534



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 159/334 (47%), Gaps = 23/334 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G  PD++TY S + G+C++  L EA  +L+ M E G+ P+ VTY  +ID    +  
Sbjct: 378 LVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVG 437

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + +    D+M+  GI P   TY + +     E +M +A+ M+  M + G+ P+ +TYN 
Sbjct: 438 ADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNA 497

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ--NRMIEADQ------- 171
           LI GY   G   +AFS    M+  G +P   +YT L+ +L K+  +  I A+        
Sbjct: 498 LICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIA 557

Query: 172 -------LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
                  L E  +   +  +I ++N  +   C    ++ A  LL EM    + P E  Y 
Sbjct: 558 EMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYT 617

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           +++   CR   + EA   +D M + G       + P   +Y  +I  LC+      A+++
Sbjct: 618 SIIACCCRLKMLTEALTFVDSMVKSG-------YIPQLESYRHIISSLCEEGSIQTAKQV 670

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             +M+SK    ++  +  LI+G+      AE S+
Sbjct: 671 FGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSS 704



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 134/270 (49%), Gaps = 7/270 (2%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
           TY TLI+ YC  G+L  +      +++ G  P +  Y   +        +  A  +   M
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
             +G V  + TY  L++G C  G  ++A S+   M   G  P    Y +++  L    R 
Sbjct: 134 PLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRT 193

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            EA+ L  + +A+G  P++V++NALIDG+C  G++E A  + + MD     P+  TY  L
Sbjct: 194 REAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTEL 253

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           + G C+  K++ A  L  +M   G+ P+ +       TY ALIQG C + + D A  LL+
Sbjct: 254 ISGFCKSRKLDRAMMLFSRMVDAGLVPNVV-------TYTALIQGQCSDGQLDCAYRLLQ 306

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            M + G+ P++ T   LI+ +   ++  E+
Sbjct: 307 SMENSGLVPNEWTCSVLIDALCKHERVGEA 336



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 18/280 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++PD +TY  FV   C EGR+E+A  M+  M ++G+ P  VTYN LI GY N G 
Sbjct: 448 MIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGL 507

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER----------------KMVEADDMLK 104
              AFS    MV  G  P   +Y +L+  L+ +                 +M     +L+
Sbjct: 508 TSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLE 567

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           EM +  +  +   YN  +   CR     +A  L  EM    + P+   YTS+I    +  
Sbjct: 568 EMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLK 627

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            + EA    ++ +  G +P +  +  +I   C  G+I+ A  +  +M   + + +E+ + 
Sbjct: 628 MLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWR 687

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            L+ G  ++G V E   LL  M+ +  +P    +   RLT
Sbjct: 688 ILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALY--ARLT 725



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y  F++ +C+  RL+EA  +L +M+   L P+   Y ++I   C    L  A +F D MV
Sbjct: 581 YNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMV 640

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           K G +P   +Y  +I  L  E  +  A  +  +M  K    + I + ILI+G  + G   
Sbjct: 641 KSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVA 700

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           +  SL   M  K  +P+   Y  L   ++  N + E
Sbjct: 701 ECSSLLSVMEEKNYRPSDALYARLTGKITDANDIQE 736



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
           F+++     + AD   E+F ++    ++  +  LI+ +C  G++  +   L  + R    
Sbjct: 47  FLMALARHRMLAD--MESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFA 104

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           PD   Y + + G CR G +  A RL   M  RG          T  TY AL+ GLC    
Sbjct: 105 PDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCV-------RTAFTYTALLHGLCGAGM 157

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              A  +   M + G  PD + Y +++ G+    +  E+
Sbjct: 158 VREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREA 196


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 166/322 (51%), Gaps = 19/322 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD  +Y + ++G+CK G L+ ASRML+ M   G  P  VTY++LIDG+C  G +E A 
Sbjct: 210 VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAM 269

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              D M+K G  P    YN L+  L     + +A+DML EM  +G  PD ++YN  I+G 
Sbjct: 270 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 329

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPT----------MLTYTSLIFVLSKQNRMIEADQLFEN 175
           C+    KKA ++ D M+ +G  P           +L YT L+  L K  R  EA  LF  
Sbjct: 330 CKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSK 389

Query: 176 FLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
            L + +  PD+  +N ++D HC    I++A  + K+M   K   + VT+N L+HG C   
Sbjct: 390 VLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE-KNCCNVVTWNILVHGLCVDD 448

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           ++ +A  +L  M   G  PD +       TY  L+  +CK  +   A EL  E V  G  
Sbjct: 449 RLSDAETMLLTMVDEGFIPDFV-------TYGTLVDAMCKCGKSAAALELFEEAVKGGCV 501

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           PD  TY +LI G+   + A E+
Sbjct: 502 PDVVTYSALITGLVHENMAEEA 523



 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 175/336 (52%), Gaps = 33/336 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  QPD++T+   + G+C+  +LE+A ++L +MKE G VP    YN LI GY    +
Sbjct: 33  MIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKD 92

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF F  EMVK   +PT  TY  ++  L    +  +A  +L EM +KG  P+  TYN+
Sbjct: 93  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNV 152

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           ++ G C      +A  + +EM  +G  P ++TY S I  L K +R+ EA      FLA+ 
Sbjct: 153 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA----RKFLARM 208

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + PD+V +  +I+G C +G+++ A  +L  M      PD VTY++L+ G C+ G+VE A
Sbjct: 209 PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERA 268

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             LLD M + G +P+ +++N                            P  ++YNA I G
Sbjct: 269 MGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDG 328

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LCK +    A+ +   MV +G TP+ ++Y  LI  I
Sbjct: 329 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDI 364



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 164/339 (48%), Gaps = 35/339 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  PD   Y + +SG  K     +A + L +M +N  +PT VTY  ++DG C    
Sbjct: 68  MKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAER 127

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN- 119
              A    DEM  +G  P   TYN+++  L  ERK+ EA  ML+EM  +G  PD +TYN 
Sbjct: 128 TRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNS 187

Query: 120 -------------------------------ILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                           +ING C+ G+   A  + D M ++G  P
Sbjct: 188 FIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTP 247

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
            ++TY+SLI    K   +  A  L ++ L  G  P++V +N+L+      G+I +A  +L
Sbjct: 248 DVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDML 307

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---PTRLTY 265
            EM+R    PD V+YN  + G C+  +V++A+ + D+M  RG  P+  S++      L Y
Sbjct: 308 VEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLY 367

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
             L+ GLCK    D A  L  +++ + I   D  +++++
Sbjct: 368 TVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVM 406



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 10/303 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G + + +TY   +  + +E R ++AS + ++M +    P A T+  L+ G C    LE A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M + G +P  + YN LI      +   +A   L EM +   +P  +TY  +++G
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+    + A  L DEM  KG  P + TY  ++  L ++ ++ EA ++ E    +G  PD
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N+ I G C    ++ A   L    RM V PD V+Y T+++G C+ G ++ A R+LD
Sbjct: 182 VVTYNSFIKGLCKCDRVDEARKFLA---RMPVTPDVVSYTTVINGLCKSGDLDSASRMLD 238

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  RG  PD +       TY++LI G CK  E + A  LL  M+  G  P+   Y SL+
Sbjct: 239 HMSNRGCTPDVV-------TYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLL 291

Query: 305 EGI 307
             +
Sbjct: 292 GAL 294



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 12/195 (6%)

Query: 1   MKSRGVQPDSYTYGSFV----------SGMCKEGRLEEASRMLEQMKENGLV-PTAVTYN 49
           M  RG  P++ +Y   +           G+CK GR +EA  +  ++ +  +  P    YN
Sbjct: 345 MVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYN 404

Query: 50  TLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
            ++D +C +  ++ A     +M+++       T+N+L+H L ++ ++ +A+ ML  M ++
Sbjct: 405 VMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDE 463

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G +PD +TY  L++  C+CG +  A  L +E +  G  P ++TY++LI  L  +N   EA
Sbjct: 464 GFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEA 523

Query: 170 DQLFENFLAKGMLPD 184
             LF   + +  +PD
Sbjct: 524 YLLFTKLVERRWVPD 538



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 119/237 (50%), Gaps = 12/237 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ RG  PD  +Y + + G+CK  R+++A  + ++M E G  P A +Y+ LI        
Sbjct: 310 MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTV 369

Query: 53  --DGYCNKGNLEMAFSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
             DG C  G  + A +   +++ + I  P    YN+++      R++ +A  + K+M EK
Sbjct: 370 LLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEK 429

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
               + +T+NIL++G C       A ++   M+ +G  P  +TY +L+  + K  +   A
Sbjct: 430 NCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAA 488

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            +LFE  +  G +PD+V ++ALI G       E A+ L  ++   +  PD+ T   L
Sbjct: 489 LELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLL 545



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TYG+ V  MCK G+   A  + E+  + G VP  VTY+ LI G  ++  
Sbjct: 460 MVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENM 519

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100
            E A+    ++V++  +P   T  LL  +L +  K  +A+
Sbjct: 520 AEEAYLLFTKLVERRWVPDDKTLGLLHRKLKLLNKPRKAE 559


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++PD YTYGS ++ +C  GR  EA    + M   G+ P    Y  LI GY  KG 
Sbjct: 299 MSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGA 358

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       + MV+ G+ P    +N++      +  + EA  +  +M ++G+ PD + +  
Sbjct: 359 LSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGA 418

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++M+++G+ P +  + SL++ L   ++  +A + +   L +G
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V FN ++   CT G + +A  L+  M+R+   PD ++Y TL+ G C  G+++EA 
Sbjct: 479 IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAA 538

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + LD M   G+KPD         TYN L+ G C+    D A  + REM+  GITP   TY
Sbjct: 539 KSLDVMLSVGLKPDE-------WTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTY 591

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+ +  + +E+
Sbjct: 592 STILHGLFTTRRFSEA 607



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 169/319 (52%), Gaps = 10/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M   G  PD  +Y + + G C E R EEA  +L  M ++      P  V+Y T+I+G+  
Sbjct: 156 MPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFT 215

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++ A++   EM+ +GI P   TY  +I  L   + +  A+ + ++M +KG+ PD+ T
Sbjct: 216 EGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDT 275

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LI+GY   G  K+   + +EM   G++P   TY SL+  L    R  EA   F++ +
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMI 335

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P++ ++  LI G+ T G +     LL  M    + PD   +N +     ++  ++
Sbjct: 336 RKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMID 395

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  + ++MK++G+ PD ++F        ALI  LCK    D A     +M+++G+ P+ 
Sbjct: 396 EAMHIFNKMKQQGLSPDVVNF-------GALIDALCKLGRVDDAVLKFNQMMNEGVAPNI 448

Query: 298 NTYFSLIEGIASVDKAAES 316
             + SL+ G+ +VDK  ++
Sbjct: 449 FVFNSLVYGLCTVDKWEKA 467



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 154/341 (45%), Gaps = 46/341 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD   +G+ +  +CK GR+++A     QM   G+ P    +N+L+ G C    
Sbjct: 404 MKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDK 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--------------LMER------------ 94
            E A  F  EM+ QGI P    +N ++  L              LMER            
Sbjct: 464 WEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTT 523

Query: 95  ---------KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                    ++ EA   L  M   G+ PD  TYN L++GYCR G    A+ +  EM+  G
Sbjct: 524 LIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG 583

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P ++TY++++  L    R  EA +L+ N +  G   +I ++N +++G   N  ++ AF
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAF 643

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L + +       +  T+N ++    + G+ E+A  L   +   G+ PD         TY
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPD-------VFTY 696

Query: 266 NALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLI 304
             + + L   +EG L E  +L   M   G TP+     +L+
Sbjct: 697 CLIAENLI--EEGYLEEFDDLFSAMEKSGTTPNSRMLNALV 735



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 138/279 (49%), Gaps = 11/279 (3%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100
           + P   TY+ LI  +C  G LE  F+    ++K G        N L+  L   +++ EA 
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAM 149

Query: 101 DML-KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH---KGIQPTMLTYTSL 156
           D+L K M E G  PD ++YN L+ G+C    A++A  L   M     +   P +++Y ++
Sbjct: 150 DILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATV 209

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I     + ++ +A  LF   + +G+ P++V +  +IDG C    ++RA  + ++M    V
Sbjct: 210 INGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD  TYN L+HG    GK +E  R+L++M   G+KPD         TY +L+  LC N 
Sbjct: 270 KPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDC-------YTYGSLLNYLCNNG 322

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
               A      M+ KGI P+   Y  LI G A+    +E
Sbjct: 323 RCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSE 361



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +PD  +Y + + G C  GR++EA++ L+ M   GL P   TYNTL+ GYC  G 
Sbjct: 509 MERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGR 568

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EM++ GI P   TY+ ++H L   R+  EA ++   M   G   +   YNI
Sbjct: 569 IDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNI 628

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG  +     +AF L   +  K  Q  + T+  +I  L K  R  +A  LF    + G
Sbjct: 629 ILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYG 688

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+  +  + +     G +E    L   M++    P+    N L+     +G +  A 
Sbjct: 689 LVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAG 748

Query: 241 RLLDQMKRR 249
             L ++  +
Sbjct: 749 AYLSKLDEK 757



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 42/242 (17%)

Query: 116 ITYNILINGYCRCGNAKKA-------FSLHDEMIHK---GIQPTMLTYTSLIFVLSKQNR 165
           I +N L+    R    + +        SL + MI +    + P + TY+ LI    +  R
Sbjct: 50  IAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVTPDLCTYSILIGCFCRMGR 109

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL-KEMDRMKVHPDEVTYN 224
           +      F   L  G   + ++ N L+ G C    +  A  +L K M  +   PD V+YN
Sbjct: 110 LEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYN 169

Query: 225 TLMHGRCRQGKVEEARRLLDQM---KRRGIKPDHISF----------------------- 258
           TL+ G C + + EEA  LL  M   + R   P+ +S+                       
Sbjct: 170 TLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEM 229

Query: 259 -----NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
                 P  +TY  +I GLCK Q  D AE + ++M+ KG+ PD++TY  LI G  S+ K 
Sbjct: 230 MDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKW 289

Query: 314 AE 315
            E
Sbjct: 290 KE 291



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G Q + + Y   ++G+ K   ++EA ++ + +          T+N +I      G 
Sbjct: 614 MITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGR 673

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      +   G++P   TY L+   L+ E  + E DD+   M + G  P+S   N 
Sbjct: 674 NEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNA 733

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           L+      G+  +A +   ++  K       T   LI +LS+      A  L E +
Sbjct: 734 LVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEKY 789


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 171/312 (54%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  T GS V+G C+  R+ +A  ++++M E G  P  V YN +ID  C    +  A
Sbjct: 150 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDA 209

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F F  E+ ++GI P   TY  L++ L    +  +A  +L +M +K I P+ ITY+ L++ 
Sbjct: 210 FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G   +A  L +EM+   I P ++TY+SL+  L   +R+ EA+Q+F+  ++KG L D
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLAD 329

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LI+G C    +E    L +EM +  +  + VTYNTL+ G  + G V++A+    
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 389

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   GI PD         TYN L+ GLC N E + A  +  +M  + +  D  TY ++I
Sbjct: 390 QMDFFGISPDI-------WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442

Query: 305 EGIASVDKAAES 316
            G+    K  E+
Sbjct: 443 RGMCKTGKVEEA 454



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 167/315 (53%), Gaps = 20/315 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +G++P+  TY + V+G+C   R  +A+R+L  M +  + P  +TY+ L+D +   G 
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EMV+  I P   TY+ L++ L +  ++ EA+ M   M  KG + D ++YN 
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 335

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+    +    L  EM  +G+    +TY +LI    +   + +A + F      G
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N L+ G C NG +E+A  + ++M + ++  D VTY T++ G C+ GKVEEA 
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 455

Query: 241 RLLDQMKRRGIKPDHISFNP------------------TRLTYNALIQGLCKNQEGD--L 280
            L   +  +G+KPD +++                    T++    L++  C   +GD  L
Sbjct: 456 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITL 515

Query: 281 AEELLREMVSKGITP 295
           + EL+++M+S G  P
Sbjct: 516 SAELIKKMLSCGYAP 530



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 167/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++ D YT+   ++  C   ++  A  +L +M + G  P  VT  +L++G+C +  
Sbjct: 111 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 170

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  D+MV+ G  P    YN +I  L   +++ +A D  KE+  KGI P+ +TY  
Sbjct: 171 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C       A  L  +MI K I P ++TY++L+    K  +++EA +LFE  +   
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +++L++G C +  I+ A  +   M       D V+YNTL++G C+  +VE+  
Sbjct: 291 IDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M +RG+  + +       TYN LIQG  +  + D A+E   +M   GI+PD  TY
Sbjct: 351 KLFREMSQRGLVSNTV-------TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 403

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 404 NILLGGLC 411



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 166/318 (52%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR   P    +   +S + K  + +    + ++M+  G+     T+N +I+ +C    
Sbjct: 77  VKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQ 135

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A S   +M+K G  P   T   L++      ++ +A  ++ +M E G  PD + YN 
Sbjct: 136 VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 195

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+      AF    E+  KGI+P ++TYT+L+  L   +R  +A +L  + + K 
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ ++AL+D    NG +  A  L +EM RM + PD VTY++L++G C   +++EA 
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEAN 315

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +G   D +S       YN LI G CK +  +   +L REM  +G+  +  TY
Sbjct: 316 QMFDLMVSKGCLADVVS-------YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTY 368

Query: 301 FSLIEGI---ASVDKAAE 315
            +LI+G      VDKA E
Sbjct: 369 NTLIQGFFQAGDVDKAQE 386



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 131/254 (51%), Gaps = 7/254 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +MVK    P+   +N L+  ++  +K      + K+M   GI  D  T+NI+IN
Sbjct: 69  AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +C C     A S+  +M+  G +P  +T  SL+    ++NR+ +A  L +  +  G  P
Sbjct: 129 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKP 188

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DIV +NA+ID  C    +  AF   KE++R  + P+ VTY  L++G C   +  +A RLL
Sbjct: 189 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 248

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M ++ I P+ I       TY+AL+    KN +   A+EL  EMV   I PD  TY SL
Sbjct: 249 SDMIKKKITPNVI-------TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301

Query: 304 IEGIASVDKAAESS 317
           + G+   D+  E++
Sbjct: 302 VNGLCLHDRIDEAN 315



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 42/185 (22%)

Query: 168 EADQLFENFLAKGMLPDIVMFNAL-----------------------------------I 192
           +A  LF + +     P IV FN L                                   I
Sbjct: 68  DAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVI 127

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +  C    +  A S+L +M ++   PD VT  +L++G CR+ +V +A  L+D+M   G K
Sbjct: 128 NCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYK 187

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           PD ++       YNA+I  LCK +  + A +  +E+  KGI P+  TY +L+ G+ +  +
Sbjct: 188 PDIVA-------YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240

Query: 313 AAESS 317
            ++++
Sbjct: 241 WSDAA 245


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 188/317 (59%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++ ++  Y S ++ +C +G++ +A R+LE M  +G+   AV + T+I G+C+KG+
Sbjct: 313 MAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGD 372

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM K+G+     T+  LI+ L    ++ EAD +L+EM +KG+  D +TY +
Sbjct: 373 LAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTV 432

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN  +AF +H+EM+ + + P ++TYT+L   L KQ  +  A++L      KG
Sbjct: 433 LIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKG 492

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  ++  +N+LI+G C  GN+E+A  ++ EM+      D  TY TL+   C+ G+ + A 
Sbjct: 493 LELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAH 552

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L +M  +GIK       P+  TYN L+ G C +   +  ++LL  M+ K + P+  TY
Sbjct: 553 NMLQEMLDKGIK-------PSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTY 605

Query: 301 FSLIEGIASVDKAAESS 317
            SL++    +DK  +S+
Sbjct: 606 NSLMKQYC-IDKNMKST 621



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+  D  T+ + ++G+C+ G L+EA R+L++M + GL    VTY  LIDGYC +GN
Sbjct: 383 MQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGN 442

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   +EMV + + P   TY  L   L  +  +  A+++L EM  KG+  +  TYN 
Sbjct: 443 MVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNS 502

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ GN ++A  +  EM   G +  + TYT+LI  L K      A  + +  L KG
Sbjct: 503 LINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKG 562

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P I  +N L++G C +G +E    LL+ M    V P+ VTYN+LM   C    ++   
Sbjct: 563 IKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTT 622

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M  + + P+         TYN LI+G CK +    A    +EM+ KG+    ++Y
Sbjct: 623 EIYKGMHSQEVAPNEN-------TYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSY 675

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +    K +E+
Sbjct: 676 SALIRLLNKKKKFSEA 691



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 161/300 (53%), Gaps = 7/300 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TYG+ V G C  G LE A ++L++M   GL   A  Y ++I   CNKG +  A   
Sbjct: 285 PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRV 344

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            ++M   G+   A  +  +I     +  +  A  + +EM ++G+  D +T+  LING CR
Sbjct: 345 LEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCR 404

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K+A  +  EM+ KG+   ++TYT LI    K+  M+EA ++    + + + P++V 
Sbjct: 405 AGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVT 464

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + AL DG C  G++  A  LL EM    +  +  TYN+L++G C+ G +E+A R++ +M+
Sbjct: 465 YTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEME 524

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G + D         TY  LI  LCK+ E D A  +L+EM+ KGI P   TY  L+ G 
Sbjct: 525 AAGHRTD-------VYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGF 577



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 132/260 (50%), Gaps = 2/260 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V P+  TY +   G+CK+G +  A+ +L +M   GL     TYN+LI+G C  GN
Sbjct: 453 MVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGN 512

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     EM   G      TY  LI  L    +   A +ML+EM +KGI P   TYN+
Sbjct: 513 LEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNV 572

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+C  G  +    L + M+ K ++P ++TY SL+        M    ++++   ++ 
Sbjct: 573 LMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQE 632

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +N LI GHC   N++ A    +EM    +     +Y+ L+    ++ K  EAR
Sbjct: 633 VAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEAR 692

Query: 241 RLLDQMKRRGI--KPDHISF 258
              D+M+  G+  +PD  SF
Sbjct: 693 VFFDKMRNEGLTAEPDVYSF 712



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 156/307 (50%), Gaps = 39/307 (12%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           ++ +L ++++ GL P+  + N ++    ++  L+ A +   E+  + +     ++N+L+ 
Sbjct: 212 SAELLRRLRQYGLSPSPESCNAVL----SRLPLDEAIALFRELPDKNV----CSHNILLK 263

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            LL   ++ +A     EM      PD +TY  +++GYC  G  + A  L DEM  KG++ 
Sbjct: 264 ALLSAGRLKDACQHFDEMSSP---PDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLES 320

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
               YTS+I +L  + ++ +A ++ E+    G+  D V+F  +I G C+ G++  A  L 
Sbjct: 321 NATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLF 380

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------- 259
           +EM +  +  D VT+  L++G CR G+++EA R+L +M  +G+  D +++          
Sbjct: 381 EEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKR 440

Query: 260 -------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                              P  +TY AL  GLCK  +   A ELL EM +KG+  +  TY
Sbjct: 441 GNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTY 500

Query: 301 FSLIEGI 307
            SLI G+
Sbjct: 501 NSLINGL 507



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 119/211 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G + D YTY + +  +CK G  + A  ML++M + G+ P+  TYN L++G+C  G 
Sbjct: 523 MEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGR 582

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      + M+++ + P   TYN L+ +  +++ M    ++ K M  + + P+  TYNI
Sbjct: 583 VEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNI 642

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+  N K+A   H EMI KG++ T  +Y++LI +L+K+ +  EA   F+    +G
Sbjct: 643 LIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEG 702

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           +  +  +++  +D      N+E   +L  E+
Sbjct: 703 LTAEPDVYSFYMDISFNEDNLESTITLCDEL 733



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 35/177 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTL--------- 51
           M  +G++P   TY   ++G C  GR+E   ++LE M E  + P  VTYN+L         
Sbjct: 558 MLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKN 617

Query: 52  --------------------------IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                     I G+C   N++ A  F  EM+++G+  TAS+Y+ 
Sbjct: 618 MKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSA 677

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           LI  L  ++K  EA     +M  +G+  +   Y+  ++      N +   +L DE++
Sbjct: 678 LIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELV 734


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 166/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++ D   Y S + G+C +GR ++ ++ML +M    ++P  VT++ LID +  +G 
Sbjct: 270 MEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGK 329

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EMV +GI P   TY+ LI     E ++ EA+ ML  M  KG  P+ +TY+I
Sbjct: 330 LLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSI 389

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+         L  E+  KG+    +TY +L+    +  ++  A +LF+  +++G
Sbjct: 390 LINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRG 449

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +  L+DG C NG +++A  + ++M + ++      YN ++HG C   KV++A 
Sbjct: 450 VPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAW 509

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD        LTYN +I GLCK      A+ L R+M   G  P D TY
Sbjct: 510 SLFCSLSVKGVKPDV-------LTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTY 562

Query: 301 FSLIEG 306
             LI  
Sbjct: 563 NILIRA 568



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 178/332 (53%), Gaps = 28/332 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P++ T+ + ++G C EGR+ EA  ++++M E    P  VT NTLI+G C KG +  A
Sbjct: 134 GFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEA 193

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MVK G      TY  +++ +        A D+ ++M E+ I    + Y+I+I+ 
Sbjct: 194 LVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDS 253

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ GN   A SL +EM  KGI+  ++ Y+S+I  L    R  +  ++    + + ++P+
Sbjct: 254 LCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPN 313

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ALID     G +  A  L  EM    + PD +TY++L+ G C++ ++ EA ++LD
Sbjct: 314 VVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLD 373

Query: 245 QMKRRGIKPDHISF--------------NPTRL--------------TYNALIQGLCKNQ 276
            M  +G +P+ +++              N  RL              TYN L+QG C++ 
Sbjct: 374 LMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSG 433

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + ++A+EL +EMVS+G+ P   TY  L++G+ 
Sbjct: 434 KLNVAKELFQEMVSRGVPPSVVTYGILLDGLC 465



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R ++     Y   +  +CK+G L++A  +  +M+  G+    V Y+++I G CN G 
Sbjct: 235 MEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGR 294

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       EM+ + I+P   T++ LI   + E K++EA ++  EM  +GI PD+ITY+ 
Sbjct: 295 WDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSS 354

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+     +A  + D M+ KG +P ++TY+ LI    K  R+    +LF    +KG
Sbjct: 355 LIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKG 414

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D V +N L+ G C +G +  A  L +EM    V P  VTY  L+ G C  G++++A 
Sbjct: 415 LVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKAL 474

Query: 241 RLLDQM-KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            + ++M K R I    I        YN +I G+C   + D A  L   +  KG+ PD  T
Sbjct: 475 EIFEKMQKSRMILGIGI--------YNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLT 526

Query: 300 YFSLIEGIASVDKAAES 316
           Y  +I G+      +E+
Sbjct: 527 YNVMIGGLCKKGSLSEA 543



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ PD+ TY S + G CKE RL EA++ML+ M   G  P  VTY+ LI+ YC    
Sbjct: 340 MVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKR 399

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       E+  +G++    TYN L+       K+  A ++ +EM  +G+ P  +TY I
Sbjct: 400 VDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGI 459

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + ++M    +   +  Y  +I  +   +++ +A  LF +   KG
Sbjct: 460 LLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKG 519

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N +I G C  G++  A  L ++M      P + TYN L+        V  + 
Sbjct: 520 VKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSV 579

Query: 241 RLLDQMKRRGIKPD 254
            L+++MK RG   D
Sbjct: 580 ELIEEMKMRGFAAD 593



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 153/312 (49%), Gaps = 11/312 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +    S + +    +      ++M  NG+     T N +I+ +C K  L  AFS 
Sbjct: 67  PSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSV 126

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
               +K G  P   T++ LI+   +E ++ EA  ++  M E    P+ +T N LING C 
Sbjct: 127 VGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCL 186

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  L D M+  G +   +TY  ++  + K      A  LF     + +   +V 
Sbjct: 187 KGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQ 246

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ +ID  C +GN++ A SL  EM+   +  D V Y++++ G C  G+ ++  ++L +M 
Sbjct: 247 YSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMI 306

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIE 305
            R I P+ +       T++ALI    K  EG L  A+EL  EMV++GI PD  TY SLI+
Sbjct: 307 GRNIIPNVV-------TFSALIDVFVK--EGKLLEAKELYNEMVARGIAPDTITYSSLID 357

Query: 306 GIASVDKAAESS 317
           G    ++  E++
Sbjct: 358 GFCKENRLGEAN 369



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 28/247 (11%)

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
           +++ K+ EA D+ + M +   +P  I ++ L +   R            EM   GI+  M
Sbjct: 45  IVDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNM 104

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            T   +I    ++ +++ A  +    L  G  P+ + F+ LI+G C  G +  A +L+  
Sbjct: 105 YTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDR 164

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP---------- 260
           M  MK  P+ VT NTL++G C +G+V EA  L+D+M + G + + I++ P          
Sbjct: 165 MVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGN 224

Query: 261 ------------------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
                             + + Y+ +I  LCK+   D A  L  EM  KGI  D   Y S
Sbjct: 225 TALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSS 284

Query: 303 LIEGIAS 309
           +I G+ +
Sbjct: 285 IIGGLCN 291


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 167/297 (56%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++PD+ TY S +SG+C  GR ++A+RM+  M +  + P   T+N LID    +G 
Sbjct: 212 MEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGR 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM+++ + P   TY+LLI+ L M  ++ EA+ M   M  KG  PD +TY+I
Sbjct: 272 ISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSI 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+    +    L  EM  +G+    +TYT LI    +  ++  A+++F+  +  G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N L+ G C NG IE+A  +L +M +  +  D VTYN ++ G C+ G+V +A 
Sbjct: 392 VPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAW 451

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            L   +  +G+ PD         TY A++ GL K      A+ L R+M   GI P++
Sbjct: 452 DLYCSLNLKGLTPDI-------WTYTAMMLGLYKKGLRGEADALFRKMKEDGILPNE 501



 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 171/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  T+GS ++G C+  R+ +A  M ++M E G  P  V YNT+IDG C    
Sbjct: 142 MMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQ 201

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M   GI P A TYN LI  L    +  +A  M+  M ++ I PD  T+N 
Sbjct: 202 VDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNA 261

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G   +A  L++EMI + + P ++TY+ LI+ L   +R+ EA+Q+F   ++KG
Sbjct: 262 LIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG 321

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V ++ LI+G+C +  +E    L  EM +  V  + VTY  L+ G CR GK+  A 
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAE 381

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M   G+ P+ I       TYN L+ GLC N + + A  +L +M   G+  D  TY
Sbjct: 382 EIFKWMVFCGVPPNII-------TYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTY 434

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+    + A++ +
Sbjct: 435 NIIIRGMCKAGEVADAWD 452



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 159/308 (51%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  +  T    ++  C+  +L  A   L +M + G  P  VT+ +L++G+C    
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDR 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D MV+ G  P    YN +I  L   +++  A D+L  M   GI PD++TYN 
Sbjct: 167 IYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNS 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G    A  +   M  + I P + T+ +LI    K+ R+ EA++L+E  + + 
Sbjct: 227 LISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRS 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++ LI G C    ++ A  +   M      PD VTY+ L++G C+  KVE   
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M +RG+  + +       TY  LIQG C+  + ++AEE+ + MV  G+ P+  TY
Sbjct: 347 KLFCEMSQRGVVRNTV-------TYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITY 399

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 400 NVLLHGLC 407



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 7/305 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K  + +    + EQM+  G+     T N L++ +C    L +A SF
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T+  L++      ++ +A  M   M E G  P+ + YN +I+G C+
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                 A  L + M   GI+P  +TY SLI  L    R  +A ++      + + PD+  
Sbjct: 199 SKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFT 258

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FNALID     G I  A  L +EM R  + PD VTY+ L++G C   +++EA ++   M 
Sbjct: 259 FNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMV 318

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G  PD +       TY+ LI G CK+++ +   +L  EM  +G+  +  TY  LI+G 
Sbjct: 319 SKGCFPDVV-------TYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGY 371

Query: 308 ASVDK 312
               K
Sbjct: 372 CRAGK 376



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 152/325 (46%), Gaps = 43/325 (13%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           + G+C   R         +M  NG     + Y  L D      +L++ F     MV+   
Sbjct: 33  ICGLCFSRRAYSGGSDYREMLRNG-----IRYMKLDD------SLDLFF----HMVQCRP 77

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +P+ + ++ L+  +   +K      + ++M   GI  +  T NIL+N +CRC     A S
Sbjct: 78  LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
              +M+  G +P ++T+ SL+    + +R+ +A  +F+  +  G  P++V++N +IDG C
Sbjct: 138 FLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLC 197

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
            +  ++ A  LL  M+   + PD VTYN+L+ G C  G+ ++A R++  M +R I PD  
Sbjct: 198 KSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVF 257

Query: 257 SFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREM 288
           +FN                            P  +TY+ LI GLC     D AE++   M
Sbjct: 258 TFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFM 317

Query: 289 VSKGITPDDNTYFSLIEGIASVDKA 313
           VSKG  PD  TY  LI G     K 
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKV 342


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 177/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP++ TYG  ++ MCK G+   A  +L +M+E  +   AV Y+ +IDG C  G+
Sbjct: 317 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 376

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF+  +EM  +GI     TYN+LI       +  +   +L++M ++ I P+ +T+++
Sbjct: 377 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 436

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G  ++A  LH EMIH+GI P  +TYTSLI    K+N + +A+Q+ +  ++KG
Sbjct: 437 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 496

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  FN LI+G+C    I+    L ++M    V  D VTYNTL+ G C  GK+  A+
Sbjct: 497 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 556

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  R + P+ +       TY  L+ GLC N E + A E+  ++    +  D   Y
Sbjct: 557 ELFQEMVSRKVPPNIV-------TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 609

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+ +  K  ++ +
Sbjct: 610 NIIIHGMCNASKVDDAWD 627



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 170/308 (55%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P++ T+ + ++G+C EGR+ EA  ++++M E G  P  +T NTL++G C  G    A
Sbjct: 251 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 310

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+MV+ G  P A TY  +++ +    +   A ++L++M E+ I  D++ Y+I+I+G
Sbjct: 311 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 370

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   AF+L +EM  KGI   ++TY  LI       R  +  +L  + + + + P+
Sbjct: 371 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 430

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ LID     G +  A  L KEM    + PD +TY +L+ G C++  +++A +++D
Sbjct: 431 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 490

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +G        +P   T+N LI G CK    D   EL R+M  +G+  D  TY +LI
Sbjct: 491 LMVSKGC-------DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 543

Query: 305 EGIASVDK 312
           +G   + K
Sbjct: 544 QGFCELGK 551



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 167/341 (48%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R ++ D+  Y   + G+CK G L+ A  +  +M+  G+    +TYN LI G+CN G 
Sbjct: 352 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-- 118
            +       +M+K+ I P   T+++LI   + E K+ EA+++ KEM  +GI PD+ITY  
Sbjct: 412 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 471

Query: 119 ---------------------------------NILINGYCRCGNAKKAFSLHDEMIHKG 145
                                            NILINGYC+         L  +M  +G
Sbjct: 472 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 531

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +    +TY +LI    +  ++  A +LF+  +++ + P+IV +  L+DG C NG  E+A 
Sbjct: 532 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 591

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + +++++ K+  D   YN ++HG C   KV++A  L   +  +G+K       P   TY
Sbjct: 592 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK-------PGVKTY 644

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           N +I GLCK      AE L R+M   G  PD  TY  LI  
Sbjct: 645 NIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 685



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 163/311 (52%), Gaps = 10/311 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +    S + K  + +    + +QM+  G+     T + +I+ +C    L +AFS 
Sbjct: 184 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 243

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P   T++ LI+ L +E ++ EA +++  M E G  PD IT N L+NG C 
Sbjct: 244 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 303

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  L D+M+  G QP  +TY  ++ V+ K  +   A +L      + +  D V 
Sbjct: 304 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 363

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ +IDG C +G+++ AF+L  EM+   +  + +TYN L+ G C  G+ ++  +LL  M 
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +R I       NP  +T++ LI    K  +   AEEL +EM+ +GI PD  TY SLI+G 
Sbjct: 424 KRKI-------NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 476

Query: 308 AS---VDKAAE 315
                +DKA +
Sbjct: 477 CKENHLDKANQ 487



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 161/312 (51%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+  + YT    ++  C+  +L  A   + ++ + G  P  +T++TLI+G C +G 
Sbjct: 212 MELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGR 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D MV+ G  P   T N L++ L +  K  EA  ++ +M E G  P+++TY  
Sbjct: 272 VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ G    A  L  +M  + I+   + Y+ +I  L K   +  A  LF     KG
Sbjct: 332 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I+ +N LI G C  G  +    LL++M + K++P+ VT++ L+    ++GK+ EA 
Sbjct: 392 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 451

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RGI PD I       TY +LI G CK    D A +++  MVSKG  P+  T+
Sbjct: 452 ELHKEMIHRGIAPDTI-------TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 504

Query: 301 FSLIEGIASVDK 312
             LI G    ++
Sbjct: 505 NILINGYCKANR 516



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 133/254 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD+ TY S + G CKE  L++A++M++ M   G  P   T+N LI+GYC    
Sbjct: 457 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 516

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       +M  +G++    TYN LI       K+  A ++ +EM  + + P+ +TY I
Sbjct: 517 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 576

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G ++KA  + +++    ++  +  Y  +I  +   +++ +A  LF +   KG
Sbjct: 577 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 636

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N +I G C  G +  A  L ++M+     PD  TYN L+      G   ++ 
Sbjct: 637 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSV 696

Query: 241 RLLDQMKRRGIKPD 254
           +L++++KR G   D
Sbjct: 697 KLIEELKRCGFSVD 710



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  P+  T+   ++G CK  R+++   +  +M   G+V   VTYNTLI G+C  G 
Sbjct: 492 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 551

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A     EMV + + P   TY +L+  L    +  +A ++ +++ +  +  D   YNI
Sbjct: 552 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 611

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C       A+ L   +  KG++P + TY  +I  L K+  + EA+ LF      G
Sbjct: 612 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 671

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
             PD   +N LI  H  +G+  ++  L++E+ R     D  T
Sbjct: 672 HAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAST 713



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 46/250 (18%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           FRD M+    +PT   ++ L   +   ++      + K+M  KGI  +  T +I+IN +C
Sbjct: 174 FRD-MIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFC 232

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           RC     AFS   ++I  G +P  +T                                  
Sbjct: 233 RCRKLCLAFSAMGKIIKLGYEPNTIT---------------------------------- 258

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F+ LI+G C  G +  A  L+  M  M   PD +T NTL++G C  GK  EA  L+D+M
Sbjct: 259 -FSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKM 317

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G +P+ +++ P       ++  +CK+ +  LA ELLR+M  + I  D   Y  +I+G
Sbjct: 318 VEYGCQPNAVTYGP-------VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 370

Query: 307 I---ASVDKA 313
           +    S+D A
Sbjct: 371 LCKHGSLDNA 380



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR V P+  TY   + G+C  G  E+A  + E+++++ +      YN +I G CN   
Sbjct: 562 MVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 621

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+     +  +G+ P   TYN++I  L  +  + EA+ + ++M E G  PD  TYNI
Sbjct: 622 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNI 681

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           LI  +   G+A K+  L +E+   G      T   +I +LS
Sbjct: 682 LIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLS 722


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 169/320 (52%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG------ 54
           M  R + P + TY S + G CK  RLE+A  M + M   G  P  +T NTLIDG      
Sbjct: 176 MLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKR 235

Query: 55  -----YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
                +C  GN+ +A     EM+  G+ P   T N L+  L    K+ +A +M K   + 
Sbjct: 236 HLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKS 295

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            +  D+ T NI+ING C+     +A+ L + +   G++  ++TY  LI V  K+   + A
Sbjct: 296 KMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRA 355

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + ++   L KG++P  V +N+++DG C    +E A  ++  M      PD VT++TL+ G
Sbjct: 356 EDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKG 415

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M +RG+  D I       TYNALI G CK  + + A+++  EMV
Sbjct: 416 YCKAGRVDDGLELFSEMCQRGLVADTI-------TYNALIHGFCKVGDLNGAQDIFEEMV 468

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T+ S++ G+ +
Sbjct: 469 SSGVCPDTITFRSMLAGLCT 488



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 174/355 (49%), Gaps = 39/355 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD+ TYG+ V+GMCK G    A  ML +M E+ +    V Y+ ++D  C  GN
Sbjct: 36  MVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGN 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM ++GI P   TYN +I       K  +A+ +L++M E+ I PD +T++ 
Sbjct: 96  HIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSA 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN + + G    A  L+ EM+ + I PT +TY+S+I    K +R+ +A  +F+  ++KG
Sbjct: 156 LINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKG 215

Query: 181 MLPDIVMFNALIDG-----------HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             PDI+  N LIDG            C  GN+  A  L +EM    V PD VT NTL+ G
Sbjct: 216 CSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAG 275

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------PTR----- 262
            C  GK+E+A  +    ++  +  D  + N                      P       
Sbjct: 276 LCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETD 335

Query: 263 -LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +TYN LI    K      AE++  EM+ KGI P   TY S+++G    ++  E+
Sbjct: 336 VVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEA 390



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 153/321 (47%), Gaps = 18/321 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+ + ++   KEG++  A  +  +M    + PT +TY+++IDG+C    
Sbjct: 141 MIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSR 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI-----------HELLMERKMVEADDMLKEMGEK 109
           LE A    D MV +G  P   T N LI           H       +  A D+ +EM   
Sbjct: 201 LEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISN 260

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ PD +T N L+ G C  G  +KA  +        +     T   +I  + K N++ EA
Sbjct: 261 GVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEA 320

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             LF +    G+  D+V +N LI      GN  RA  +  EM    + P  VTYN+++ G
Sbjct: 321 WDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDG 380

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+Q ++EEAR+++D M   G  PD +       T++ LI+G CK    D   EL  EM 
Sbjct: 381 FCKQNRLEEARQMVDSMVSEGCSPDVV-------TFSTLIKGYCKAGRVDDGLELFSEMC 433

Query: 290 SKGITPDDNTYFSLIEGIASV 310
            +G+  D  TY +LI G   V
Sbjct: 434 QRGLVADTITYNALIHGFCKV 454



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 171/333 (51%), Gaps = 21/333 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   +  T+ + ++G+C+EGR+ +A  ++++M E G  P AVTY T+++G C  G+
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   +M +  I      Y+ ++  L  +   ++A ++  EM EKGI P+ +TYN 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC  G    A  L  +MI + I P ++T+++LI    K+ ++  A++L+   L + 
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT-----------LMHG 229
           + P  + ++++IDG C +  +E A  +   M      PD +T NT           L+HG
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHG 240

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G V  A+ L  +M   G+ PD +       T N L+ GLC+N + + A E+ +   
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIV-------TCNTLLAGLCENGKLEKALEMFKVFQ 293

Query: 290 SKGITPDDNTYFSLIEGIA---SVDKAAESSNS 319
              +  D  T   +I G+     VD+A +  NS
Sbjct: 294 KSKMDLDTATCNIIINGMCKGNKVDEAWDLFNS 326



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 141/248 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV PD  T  + ++G+C+ G+LE+A  M +  +++ +     T N +I+G C    
Sbjct: 257 MISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNK 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+   + +   G+     TYN+LI   + E   + A+D+  EM  KGI+P ++TYN 
Sbjct: 317 VDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNS 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+C+    ++A  + D M+ +G  P ++T+++LI    K  R+ +  +LF     +G
Sbjct: 377 MVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D + +NALI G C  G++  A  + +EM    V PD +T+ +++ G C + ++++  
Sbjct: 437 LVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGL 496

Query: 241 RLLDQMKR 248
            +L+ +++
Sbjct: 497 TMLEDLQK 504



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 110/209 (52%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+ T    ++GMCK  +++EA  +   +  NG+    VTYN LI  +  +GN   A    
Sbjct: 300 DTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIY 359

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM+ +GI+P+  TYN ++     + ++ EA  M+  M  +G  PD +T++ LI GYC+ 
Sbjct: 360 LEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKA 419

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G       L  EM  +G+    +TY +LI    K   +  A  +FE  ++ G+ PD + F
Sbjct: 420 GRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITF 479

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVH 217
            +++ G CT   +++  ++L+++ +   H
Sbjct: 480 RSMLAGLCTKAELQKGLTMLEDLQKSVDH 508


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 177/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP++ TYG  ++ MCK G+   A  +L +M+E  +   AV Y+ +IDG C  G+
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF+  +EM  +GI     TYN+LI       +  +   +L++M ++ I P+ +T+++
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G  ++A  LH EMIH+GI P  +TYTSLI    K+N + +A+Q+ +  ++KG
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  FN LI+G+C    I+    L ++M    V  D VTYNTL+ G C  GK+  A+
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  R + P+ +       TY  L+ GLC N E + A E+  ++    +  D   Y
Sbjct: 459 ELFQEMVSRKVPPNIV-------TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+ +  K  ++ +
Sbjct: 512 NIIIHGMCNASKVDDAWD 529



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 170/308 (55%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P++ T+ + ++G+C EGR+ EA  ++++M E G  P  +T NTL++G C  G    A
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+MV+ G  P A TY  +++ +    +   A ++L++M E+ I  D++ Y+I+I+G
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   AF+L +EM  KGI   ++TY  LI       R  +  +L  + + + + P+
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ LID     G +  A  L KEM    + PD +TY +L+ G C++  +++A +++D
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 392

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +G        +P   T+N LI G CK    D   EL R+M  +G+  D  TY +LI
Sbjct: 393 LMVSKGC-------DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445

Query: 305 EGIASVDK 312
           +G   + K
Sbjct: 446 QGFCELGK 453



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 167/341 (48%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R ++ D+  Y   + G+CK G L+ A  +  +M+  G+    +TYN LI G+CN G 
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-- 118
            +       +M+K+ I P   T+++LI   + E K+ EA+++ KEM  +GI PD+ITY  
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373

Query: 119 ---------------------------------NILINGYCRCGNAKKAFSLHDEMIHKG 145
                                            NILINGYC+         L  +M  +G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +    +TY +LI    +  ++  A +LF+  +++ + P+IV +  L+DG C NG  E+A 
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + +++++ K+  D   YN ++HG C   KV++A  L   +  +G+KP          TY
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG-------VKTY 546

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           N +I GLCK      AE L R+M   G  PD  TY  LI  
Sbjct: 547 NIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 587



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 163/311 (52%), Gaps = 10/311 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +    S + K  + +    + +QM+  G+     T + +I+ +C    L +AFS 
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P   T++ LI+ L +E ++ EA +++  M E G  PD IT N L+NG C 
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  L D+M+  G QP  +TY  ++ V+ K  +   A +L      + +  D V 
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ +IDG C +G+++ AF+L  EM+   +  + +TYN L+ G C  G+ ++  +LL  M 
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +R I       NP  +T++ LI    K  +   AEEL +EM+ +GI PD  TY SLI+G 
Sbjct: 326 KRKI-------NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378

Query: 308 AS---VDKAAE 315
                +DKA +
Sbjct: 379 CKENHLDKANQ 389



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 161/312 (51%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+  + YT    ++  C+  +L  A   + ++ + G  P  +T++TLI+G C +G 
Sbjct: 114 MELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGR 173

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D MV+ G  P   T N L++ L +  K  EA  ++ +M E G  P+++TY  
Sbjct: 174 VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 233

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ G    A  L  +M  + I+   + Y+ +I  L K   +  A  LF     KG
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I+ +N LI G C  G  +    LL++M + K++P+ VT++ L+    ++GK+ EA 
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RGI PD I       TY +LI G CK    D A +++  MVSKG  P+  T+
Sbjct: 354 ELHKEMIHRGIAPDTI-------TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 406

Query: 301 FSLIEGIASVDK 312
             LI G    ++
Sbjct: 407 NILINGYCKANR 418



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 133/254 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD+ TY S + G CKE  L++A++M++ M   G  P   T+N LI+GYC    
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       +M  +G++    TYN LI       K+  A ++ +EM  + + P+ +TY I
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G ++KA  + +++    ++  +  Y  +I  +   +++ +A  LF +   KG
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N +I G C  G +  A  L ++M+     PD  TYN L+      G   ++ 
Sbjct: 539 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSV 598

Query: 241 RLLDQMKRRGIKPD 254
           +L++++KR G   D
Sbjct: 599 KLIEELKRCGFSVD 612



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 112/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  P+  T+   ++G CK  R+++   +  +M   G+V   VTYNTLI G+C  G 
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 453

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A     EMV + + P   TY +L+  L    +  +A ++ +++ +  +  D   YNI
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C       A+ L   +  KG++P + TY  +I  L K+  + EA+ LF      G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
             PD   +N LI  H  +G+  ++  L++E+ R     D  T
Sbjct: 574 HAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAST 615



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 46/250 (18%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           FRD M+    +PT   ++ L   +   ++      + K+M  KGI  +  T +I+IN +C
Sbjct: 76  FRD-MIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFC 134

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           RC     AFS   ++I  G +P  +T                                  
Sbjct: 135 RCRKLCLAFSAMGKIIKLGYEPNTIT---------------------------------- 160

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F+ LI+G C  G +  A  L+  M  M   PD +T NTL++G C  GK  EA  L+D+M
Sbjct: 161 -FSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKM 219

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G +P+ +++ P       ++  +CK+ +  LA ELLR+M  + I  D   Y  +I+G
Sbjct: 220 VEYGCQPNAVTYGP-------VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 307 IA---SVDKA 313
           +    S+D A
Sbjct: 273 LCKHGSLDNA 282



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV  D+ TY + + G C+ G+L  A  + ++M    + P  VTY  L+DG C+ G 
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    +++ K  +      YN++IH +    K+ +A D+   +  KG+ P   TYNI
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C+ G   +A  L  +M   G  P   TY  LI          ++ +L E     G
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
              D      +ID   ++G ++++F
Sbjct: 609 FSVDASTIKMVID-MLSDGRLKKSF 632


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 165/312 (52%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PDS+ Y SFV G C+ G    A R+   M + G   T  TY  L+ G C  G +  A
Sbjct: 104 GLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREA 163

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +    M   G  P +  Y++++H L    +  EA  +L +   KG VP+   YN LI+G
Sbjct: 164 MAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDG 223

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G+ + A  +   M  KG  P + TYT LI    K  ++  A  L+   +  G+ P+
Sbjct: 224 YCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPN 283

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +  LI G C+ G++E AF LL  M+   + P+E T   L+   C+ G++EEA++ L 
Sbjct: 284 VVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLG 343

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + ++GIK + +        Y ++I  LCK+ + D A  L+++++++G  PD + Y SLI
Sbjct: 344 SLVQKGIKVNQV-------IYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLI 396

Query: 305 EGIASVDKAAES 316
           +G+   +K  E+
Sbjct: 397 DGLCRENKLLEA 408



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 165/354 (46%), Gaps = 42/354 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDS+ Y   V G+C  GR  EA  +L      G VP    YN LIDGYC+ G+
Sbjct: 170 MWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGD 229

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE+A      M  +G +P   TY  LI       K+  A  +   M E G+ P+ +TY  
Sbjct: 230 LELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTT 289

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+ + AF L   M   G+ P   T   LI  L K  R+ EA Q   + + KG
Sbjct: 290 LIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKG 349

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++ ++ID  C +G  + A +L++++      PD   Y++L+ G CR+ K+ EA 
Sbjct: 350 IKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAI 409

Query: 241 RLL-----------------------------------DQMKRRGIKPDHISFNPTRLTY 265
            LL                                   D+M   G+KPD +       TY
Sbjct: 410 SLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVV-------TY 462

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
              I+  C++   + AE ++ +M+  G+ P+  TY +LI+G A++   +++ +S
Sbjct: 463 TVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSS 516



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 151/304 (49%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S+G  P+  TY   + G CK G++E A  +  +M E GL P  VTY TLI G C++G+
Sbjct: 240 MQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGH 299

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF     M   G+ P   T  +LI  L    ++ EA   L  + +KGI  + + Y  
Sbjct: 300 LEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTS 359

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+ G    A +L  ++I +G  P    Y+SLI  L ++N+++EA  L  + +  G
Sbjct: 360 MIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESG 419

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V F  LID H      +    +   M    V PD VTY   +   C+ G++E+A 
Sbjct: 420 VQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAE 479

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ QM   G++P+         TYN LI+G         A   L+ M+  G  P+D +Y
Sbjct: 480 SMMIQMIDHGVRPN-------LTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESY 532

Query: 301 FSLI 304
             L+
Sbjct: 533 TVLL 536



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 23/331 (6%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           + G  PD++ Y S + G+C+E +L EA  +L  M E+G+   AV +  LID +  +   +
Sbjct: 382 TEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSD 441

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                 D M   G+ P   TY + I     + +M +A+ M+ +M + G+ P+  TYN LI
Sbjct: 442 SPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLI 501

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR----------------M 166
            GY   G   +AFS    MI  G +P   +YT L+ +L K+N                 M
Sbjct: 502 KGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDM 561

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
              ++L E  +         +++  I        +E A S L  M    + P E  Y  +
Sbjct: 562 KVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCM 621

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           +    R   ++EA R LD M +R       ++ P   +Y  +I  LC+      A+ +  
Sbjct: 622 IECCYRMKLLKEALRFLDSMVKR-------NYLPRLESYRFIICALCEEGSFHTAKSIFG 674

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           +++SK    D+  +  LI+G+      A+ S
Sbjct: 675 DILSKEYNRDEIAWKILIDGLLQKGNTADCS 705



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 135/280 (48%), Gaps = 18/280 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV+PD  TY  F+   C++GR+E+A  M+ QM ++G+ P   TYNTLI GY N G 
Sbjct: 450 MAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGL 509

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI---------HELLMER----KMVEA---DDMLK 104
           +  AFS    M+  G  P   +Y +L+         H+L+ +     K+V+    +++L+
Sbjct: 510 VSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLE 569

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           E+ +      S  Y+  I    +    ++A S    M    + P+   YT +I    +  
Sbjct: 570 EVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMK 629

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            + EA +  ++ + +  LP +  +  +I   C  G+   A S+  ++   + + DE+ + 
Sbjct: 630 LLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWK 689

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            L+ G  ++G   +  RLL  M+ +  +P    +  +RLT
Sbjct: 690 ILIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIY--SRLT 727



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 11/169 (6%)

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P +    +L+  L++   + +     E+  A+  + ++  +  LI+ +C  G++  A   
Sbjct: 41  PPIRCLNTLLMALARHGMLSD----MESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRH 96

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           L  + R  + PD   Y + + G CR G    A RL   M +RG          T  TY A
Sbjct: 97  LSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCA-------RTPFTYAA 149

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L+QGLC       A  +   M   G  PD + Y  ++ G+    +A E+
Sbjct: 150 LLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEA 198


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 177/358 (49%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QP   TYG+ V GMCK G    A  +L +M+E + ++P  V Y+ +ID  C  G
Sbjct: 210 MMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDG 269

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++GI P   TYN +I       +  +A+ +L+EM E+ I PD +TYN
Sbjct: 270 RHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYN 329

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P  +TY+S+I    KQNR+  A+ +F     K
Sbjct: 330 ALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATK 389

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+++ FN LIDG+C    I+    LL EM    +  D  TYNTL+HG    G +  A
Sbjct: 390 GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449

Query: 240 RRLLDQMKRRGIKPDHIS------------------------------------FN---P 260
             LL +M   G+ PD ++                                    FN   P
Sbjct: 450 LDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEP 509

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 510 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 161/317 (50%), Gaps = 18/317 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD +TY S + G C  GR  +A ++L++M E  + P  VTYN LI+ +  +G 
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TY+ +I     + ++  A+ M   M  KG  P+ IT+N 
Sbjct: 341 FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNT 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM   G+     TY +LI        +  A  L +  ++ G
Sbjct: 401 LIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  + L+DG C NG ++ A  + K M + K           V PD  TYN L+ G
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L ++M  RGI PD I       TY+++I GLCK    D A ++   M 
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTI-------TYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 290 SKGITPDDNTYFSLIEG 306
           SK  +P+  T+ +LI G
Sbjct: 574 SKSFSPNVVTFTTLING 590



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P  +T+NTLIDGYC    
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM + G++   +TYN LIH   +   +  A D+L+EM   G+ PD +T + 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P + TY  LI  L  + + +EA
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      P+ VT+ TL++G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  + I       TY  LI G  K    + A ++ +EM+
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAI-------TYITLICGFRKVGNINGALDIFQEMI 643

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G+ S
Sbjct: 644 SSGVYPDTITIRNMLTGLWS 663



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 12/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y++   +   C   +L  A     ++ + GL P  VT+NTL+ G C +  
Sbjct: 105 MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M +    P   T+  L++ L  E ++VEA  +L  M E G+ P  ITY  
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++G C+ G+   A  L    +E+ H  I P ++ Y+++I  L K  R  +A  LF    
Sbjct: 225 IVDGMCKIGDTVSALDLLRKMEEISH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N++I G C++G    A  LL+EM   K+ PD VTYN L++   ++GK  
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFF 342

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TY+++I G CK    D AE +   M +KG +P+ 
Sbjct: 343 EAEELYDEMLPRGIIPNTI-------TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNL 395

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 396 ITFNTLIDG 404



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  D+ TY + + G    G L  A  +L++M  +GL P  VT +TL+DG C+ G 
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  + D M  K   P ++T+T+LI    K  R+ + 
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ + + +  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 230 RCRQGKVEEARRLLDQMK 247
              + +++ A  +L++++
Sbjct: 661 LWSKEELKRAVAMLEKLQ 678



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 148/292 (50%), Gaps = 8/292 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ V +  L+         ++  S   +M ++ I     ++ +
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       K+  A     ++ + G+ PD +T+N L++G C      +A +L  +M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++T+T+L+  L ++ R++EA  L +  +  G+ P  + +  ++DG C  G+   A 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            LL++M+ +  + P+ V Y+ ++   C+ G+  +A+ L  +M+ +GI PD         T
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD-------LFT 292

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN++I G C +     AE+LL+EM+ + I+PD  TY +LI       K  E+
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 8/267 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL-MERKMVEADDMLKEMGEK 109
           L  G+     LE A     +M++   +P+   +  L+  ++ MER  +    + ++M  K
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDL-VISLYQKMERK 108

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            I  D  ++ ILI  +C C     A S   ++   G+ P ++T+ +L+  L  ++R+ EA
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEA 168

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             LF         P++V F  L++G C  G I  A +LL  M    + P ++TY T++ G
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G    A  LL +M+    +  HI   P  + Y+A+I  LCK+     A+ L  EM 
Sbjct: 229 MCKIGDTVSALDLLRKME----EISHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            KGI PD  TY S+I G  S  + +++
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDA 309


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+++TY S + G C+   L+ A  M ++M ++G  P +VTY+TLI+G C++G LE A   
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDM 294

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            +EMV++GI PT  TY + +  L       EA ++L +M ++G VP+  T+  LI+G  R
Sbjct: 295 LEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSR 354

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A  L+ +M+  G+ PT +TY +LI  L  + R   A  +F+  L+ G LP    
Sbjct: 355 DGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQT 414

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N +I   C  G+I++A  +  +M +    P+ +TYNTL++G C+QG +  A RLL+ MK
Sbjct: 415 YNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMK 474

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
             G+KPD         TY  LI G  +  + + A  L   M+  GI+P+  TY ++I+G 
Sbjct: 475 GNGLKPD-------AWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 307 --IASVDKA 313
             +A VD A
Sbjct: 528 FNLAKVDDA 536



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 166/320 (51%), Gaps = 15/320 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG  P+  T+ + +SG+ ++G+ E A  +  +M  +GLVPT VTYN LI+  C +G 
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM----ERKMVEADDMLKEMGEKGIVPDSI 116
            E AF+    M+  G +P+  TYN +I    +    ++ MV  D MLK     G  P+ I
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK----AGSSPNVI 448

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN LI GYC+ GN   A  L + M   G++P   TYT LI   S+  ++  A  LF   
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +  G+ P+ V + A+IDG+     ++ A +L  +M      P   TYN ++ G  +   +
Sbjct: 509 MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSI 568

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA     +M ++G+ P+ I       TY + I GLC+N    LA ++  EM  +   P+
Sbjct: 569 SEAENFCGKMVKQGLLPNVI-------TYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPN 621

Query: 297 DNTYFSLIEGIASVDKAAES 316
             TY SLI G+    +A ++
Sbjct: 622 LYTYSSLIYGLCQEGRAEDA 641



 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 158/318 (49%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+S TY + ++G+C EGRLEEA  MLE+M + G+ PT  TY   +   C+ G 
Sbjct: 263 MVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGC 322

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M K+G +P   T+  LI  L  + K   A  +  +M   G+VP ++TYN 
Sbjct: 323 SSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G  + AF++   M+  G  P+  TY  +I        + +A  +F+  L  G
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+++ +N LI G+C  GN+  A  LL+ M    + PD  TY  L+ G  R GK+E A 
Sbjct: 443 SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   GI P+H+       TY A+I G     + D A  L  +MV  G  P   TY
Sbjct: 503 SLFYGMMEHGISPNHV-------TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTY 555

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G +  +  +E+ N
Sbjct: 556 NVMISGFSKTNSISEAEN 573



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 158/308 (51%), Gaps = 9/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  P + TY   +   C  G +++A  + ++M + G  P  +TYNTLI GYC +GN
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGN 462

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    + M   G+ P A TY  LI       K+  A  +   M E GI P+ +TY  
Sbjct: 463 LNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTA 522

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GY        A +L  +M+  G  P+  TY  +I   SK N + EA+      + +G
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQG 582

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+++ + + IDG C NG    AF +  EM++    P+  TY++L++G C++G+ E+A 
Sbjct: 583 LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAE 642

Query: 241 --RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
              LL ++   G +P+         TY  L++GLC       A++L+  M  KG+ P + 
Sbjct: 643 MYNLLARLTHYGCEPN-------VDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEE 695

Query: 299 TYFSLIEG 306
            Y +L+ G
Sbjct: 696 IYRALLIG 703



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 167/350 (47%), Gaps = 44/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G++PD++TY   +SG  + G+LE A+ +   M E+G+ P  VTY  +IDGY N   
Sbjct: 473 MKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +MV+ G +P++ TYN++I        + EA++   +M ++G++P+ ITY  
Sbjct: 533 VDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTS 592

Query: 121 LINGYCRCGNAKKAFSLHDEM-------------------------------------IH 143
            I+G CR G    AF +  EM                                      H
Sbjct: 593 FIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH 652

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G +P + TYT+L+  L  + R  EADQL  +   KG+ P   ++ AL+ G C N  +E 
Sbjct: 653 YGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVES 712

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A ++   MD +        Y  L+   C++  +EEA+ +   M  +    D ++      
Sbjct: 713 ALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVA------ 766

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
            +  L+ GL K  E DL  +LL  M S+  T +  TY  L   ++++D A
Sbjct: 767 -WTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCA 815



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+  TY + V G+C EGR  EA +++  M++ GL P+   Y  L+ G C    +E A
Sbjct: 654 GCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESA 713

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +    M   G     S Y  LI  L  E  + EA  + + M EK    D + + +L++G
Sbjct: 714 LNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDG 773

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
             + G       L   M  +       TY  L   LS  +  I+  Q+
Sbjct: 774 LLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQI 821


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+++TY S + G C+   L+ A  M ++M ++G  P +VTY+TLI+G C++G LE A   
Sbjct: 235 PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDM 294

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            +EMV++GI PT  TY + +  L       EA ++L +M ++G VP+  T+  LI+G  R
Sbjct: 295 LEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSR 354

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A  L+ +M+  G+ PT +TY +LI  L  + R   A  +F+  L+ G LP    
Sbjct: 355 DGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQT 414

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N +I   C  G+I++A  +  +M +    P+ +TYNTL++G C+QG +  A RLL+ MK
Sbjct: 415 YNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMK 474

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
             G+KPD         TY  LI G  +  + + A  L   M+  GI+P+  TY ++I+G 
Sbjct: 475 GNGLKPD-------AWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 307 --IASVDKA 313
             +A VD A
Sbjct: 528 FNLAKVDDA 536



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 166/320 (51%), Gaps = 15/320 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG  P+  T+ + +SG+ ++G+ E A  +  +M  +GLVPT VTYN LI+  C +G 
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM----ERKMVEADDMLKEMGEKGIVPDSI 116
            E AF+    M+  G +P+  TYN +I    +    ++ MV  D MLK     G  P+ I
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK----AGSSPNVI 448

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN LI GYC+ GN   A  L + M   G++P   TYT LI   S+  ++  A  LF   
Sbjct: 449 TYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGM 508

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +  G+ P+ V + A+IDG+     ++ A +L  +M      P   TYN ++ G  +   +
Sbjct: 509 MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSI 568

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA     +M ++G+ P+ I       TY + I GLC+N    LA ++  EM  +   P+
Sbjct: 569 SEAENFCGKMVKQGLLPNVI-------TYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPN 621

Query: 297 DNTYFSLIEGIASVDKAAES 316
             TY SLI G+    +A ++
Sbjct: 622 LYTYSSLIYGLCQEGRAEDA 641



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 158/318 (49%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+S TY + ++G+C EGRLEEA  MLE+M + G+ PT  TY   +   C+ G 
Sbjct: 263 MVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGC 322

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M K+G +P   T+  LI  L  + K   A  +  +M   G+VP ++TYN 
Sbjct: 323 SSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G  + AF++   M+  G  P+  TY  +I        + +A  +F+  L  G
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+++ +N LI G+C  GN+  A  LL+ M    + PD  TY  L+ G  R GK+E A 
Sbjct: 443 SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   GI P+H+       TY A+I G     + D A  L  +MV  G  P   TY
Sbjct: 503 SLFYGMMEHGISPNHV-------TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTY 555

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G +  +  +E+ N
Sbjct: 556 NVMISGFSKTNSISEAEN 573



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 158/308 (51%), Gaps = 9/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  P + TY   +   C  G +++A  + ++M + G  P  +TYNTLI GYC +GN
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGN 462

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    + M   G+ P A TY  LI       K+  A  +   M E GI P+ +TY  
Sbjct: 463 LNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTA 522

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GY        A +L  +M+  G  P+  TY  +I   SK N + EA+      + +G
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQG 582

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+++ + + IDG C NG    AF +  EM++    P+  TY++L++G C++G+ E+A 
Sbjct: 583 LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAE 642

Query: 241 --RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
              LL ++   G +P+         TY  L++GLC       A++L+  M  KG+ P + 
Sbjct: 643 MYNLLARLTHYGCEPN-------VDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEE 695

Query: 299 TYFSLIEG 306
            Y +L+ G
Sbjct: 696 IYRALLIG 703



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 167/350 (47%), Gaps = 44/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G++PD++TY   +SG  + G+LE A+ +   M E+G+ P  VTY  +IDGY N   
Sbjct: 473 MKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +MV+ G +P++ TYN++I        + EA++   +M ++G++P+ ITY  
Sbjct: 533 VDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTS 592

Query: 121 LINGYCRCGNAKKAFSLHDEM-------------------------------------IH 143
            I+G CR G    AF +  EM                                      H
Sbjct: 593 FIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH 652

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G +P + TYT+L+  L  + R  EADQL  +   KG+ P   ++ AL+ G C N  +E 
Sbjct: 653 YGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVES 712

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A ++   MD +        Y  L+   C++  +EEA+ +   M  +        +N   +
Sbjct: 713 ALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEK-------HWNSDEV 765

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
            +  L+ GL K  E DL  +LL  M S+  T +  TY  L   ++++D A
Sbjct: 766 VWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCA 815



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+  TY + V G+C EGR  EA +++  M++ GL P+   Y  L+ G C    +E A
Sbjct: 654 GCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESA 713

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +    M   G     S Y  LI  L  E  + EA  + + M EK    D + + +L++G
Sbjct: 714 LNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDG 773

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
             + G       L   M  +       TY  L   LS  +  I+  Q+
Sbjct: 774 LLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQI 821


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/330 (34%), Positives = 174/330 (52%), Gaps = 29/330 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++P++YTY   + G+C+   L +A  +++ M  NG+ P  V Y+TL+ GYC++G 
Sbjct: 354 MVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGK 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S   EM++ G  P   T N L+H L  E + +EA++ML++M EK   PD++T NI
Sbjct: 414 VFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNI 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG----------------------IQPTMLTYTSLIF 158
           ++NG CR G   KA  +  EM   G                        P  +TYT+LI 
Sbjct: 474 VVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLIN 533

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L K  R+ EA + F   LAK + PD V ++  I   C  G I  AF +LK+M+R     
Sbjct: 534 GLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSK 593

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
              TYN L+ G     ++ E   L D+MK +GI PD         TYN +I  LC+  + 
Sbjct: 594 TLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDIC-------TYNNIITCLCEGGKA 646

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             A  LL EM+ KGI+P+ +++  LI+  +
Sbjct: 647 KDAISLLHEMLDKGISPNVSSFKILIKAFS 676



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 181/376 (48%), Gaps = 68/376 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK---ENGLV-PTAVTYNTLIDGYC 56
           M   GV PD  T+ S +S +C+ G++ EASR+   M+   E GL  P  VT+N ++ G+C
Sbjct: 245 MNELGVLPDVVTFNSRISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFC 304

Query: 57  NKG------------------------NLEMAFSFR-----------DEMVKQGIMPTAS 81
             G                        N+ +    R           DEMV +GI P A 
Sbjct: 305 KHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAY 364

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TYN+++  L     + +A  ++  M   G+ PD++ Y+ L++GYC  G   +A S+  EM
Sbjct: 365 TYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEM 424

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           I  G QP   T  +L+  L K+ R +EA+++ +    K   PD V  N +++G C NG +
Sbjct: 425 IRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGEL 484

Query: 202 ERAFSLLKEM--------DR--------MKVH------PDEVTYNTLMHGRCRQGKVEEA 239
           ++A  ++ EM        D+          +H      PD +TY TL++G C+ G++EEA
Sbjct: 485 DKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEA 544

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           ++   +M  + ++PD +       TY+  I   CK  +   A  +L++M   G +    T
Sbjct: 545 KKKFIEMLAKNLRPDSV-------TYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQT 597

Query: 300 YFSLIEGIASVDKAAE 315
           Y +LI G+ S ++  E
Sbjct: 598 YNALILGLGSNNQIFE 613



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 13/305 (4%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN-LEMAFSFRDE 70
            Y + VS  C+E    EA R++E+M E G++P  VT+N+ I   C  G  +E +  FRD 
Sbjct: 221 VYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEASRIFRDM 280

Query: 71  MVKQGI---MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            +   +    P   T+NL++        M +A  +++ M + G       YNI + G  R
Sbjct: 281 QMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLR 340

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  + DEM+ KGI+P   TY  ++  L + + + +A  L +  +  G+ PD V 
Sbjct: 341 NGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVA 400

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ L+ G+C+ G +  A S+L EM R    P+  T NTL+H   ++G+  EA  +L +M 
Sbjct: 401 YSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMN 460

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD--NTYFSLIE 305
            +  +PD +       T N ++ GLC+N E D A E++ EM + G T  D  N++ SLI 
Sbjct: 461 EKCYQPDTV-------TCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLIN 513

Query: 306 GIASV 310
            I +V
Sbjct: 514 SIHNV 518



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 146/299 (48%), Gaps = 18/299 (6%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TY + ++G+CK GRLEEA +   +M    L P +VTY+T I  +C +G +  AF  
Sbjct: 523 PDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRV 582

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M + G   T  TYN LI  L    ++ E   +  EM EKGI PD  TYN +I   C 
Sbjct: 583 LKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCE 642

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE---NFLAKGMLPD 184
            G AK A SL  EM+ KGI P + ++  LI   SK +    A +LFE   N   +     
Sbjct: 643 GGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALY 702

Query: 185 IVMFNALIDGHCTNGNIERAFSLLK-EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +MFN L+ G    G +  A  L +  +DR  +      Y  L+   C+  ++ +A  LL
Sbjct: 703 SLMFNELLAG----GQLSEAKELFEVSLDRY-LTLKNFMYKDLIARLCQDERLADANSLL 757

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI--TPDDNTY 300
            ++  +G   DH SF P       +I GL K      A+EL + M+   +   P D TY
Sbjct: 758 YKLIDKGYGFDHASFMP-------VIDGLSKRGNKRQADELAKRMMELELEDRPVDRTY 809



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 151/342 (44%), Gaps = 47/342 (13%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKEN--GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           S V  + + G +++A    + ++     L P+   YN L+                 +M+
Sbjct: 83  SMVRVLAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYSDML 142

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
              + P   T+NLLIH L   R    A  + ++M +KG  P+  T  IL+ G CR G  K
Sbjct: 143 AARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVK 202

Query: 133 KAFSL--------------HDEMIHK--------------------GIQPTMLTYTSLIF 158
           +A  L              ++ ++ +                    G+ P ++T+ S I 
Sbjct: 203 QALELVNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRIS 262

Query: 159 VLSKQNRMIEADQLFENFLAKGML----PDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
            L +  +++EA ++F +      L    P++V FN ++ G C +G +  A  L++ M ++
Sbjct: 263 ALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKV 322

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
                   YN  + G  R G++ EAR +LD+M  +GI+P+         TYN ++ GLC+
Sbjct: 323 GNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAY-------TYNIMMDGLCR 375

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N     A  L+  M+  G+ PD   Y +L+ G  S  K  E+
Sbjct: 376 NHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEA 417



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 124/246 (50%), Gaps = 1/246 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ ++PDS TY +F+   CK+G++  A R+L+ M+ NG   T  TYN LI G  +   
Sbjct: 551 MLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQ 610

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +   +  +DEM ++GI P   TYN +I  L    K  +A  +L EM +KGI P+  ++ I
Sbjct: 611 IFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKI 670

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  + +  + K A  L +  ++   +   L Y+ +   L    ++ EA +LFE  L + 
Sbjct: 671 LIKAFSKSSDFKVACELFEVALNICGRKEAL-YSLMFNELLAGGQLSEAKELFEVSLDRY 729

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +     M+  LI   C +  +  A SLL ++       D  ++  ++ G  ++G   +A 
Sbjct: 730 LTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSKRGNKRQAD 789

Query: 241 RLLDQM 246
            L  +M
Sbjct: 790 ELAKRM 795


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 175/303 (57%), Gaps = 8/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  T+ + ++G+C+EGR+ EA  +L++M E+GL P  +TY T++DG C  G+   A +
Sbjct: 179 KPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALN 238

Query: 67  FRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +M +   I+P    YN +I  L  + +  +A ++  EM EK I PD +TYN +ING+
Sbjct: 239 LLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGF 298

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G    A  L  EM+ + I P ++T+++LI    K+ +  EA++L++  L + ++P  
Sbjct: 299 CISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPST 358

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V ++++IDG C    ++ A  +          PD +T+NTL+ G CR  +V++  +LL +
Sbjct: 359 VTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHE 418

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M   G+  + I       TY  LI G C+  + + A++LL+EM+S G+ P+  T  +L++
Sbjct: 419 MTEAGLVANTI-------TYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLD 471

Query: 306 GIA 308
           G+ 
Sbjct: 472 GLC 474



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 181/358 (50%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QP+  TYG+ V GMCK G    A  +L +M+E + ++P  V YNT+IDG    G
Sbjct: 208 MLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDG 267

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++ I P   TYN +I+   +  +  +A+ +L+EM E+ I PD +T++
Sbjct: 268 RHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFS 327

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ + I P+ +TY+S+I    KQNR+  A+ +F     K
Sbjct: 328 ALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTK 387

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI+ FN LI G+C    ++    LL EM    +  + +TY TL+HG C+ G +  A
Sbjct: 388 GCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAA 447

Query: 240 RRLLDQMKRRGIKPDHISFN---------------------------------------P 260
           + LL +M   G+ P+ ++ N                                       P
Sbjct: 448 QDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEP 507

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TYN LI GL    +   AEEL  EM  +GI PD  TY S+I+G+    +  E++ 
Sbjct: 508 DVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 565



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 165/350 (47%), Gaps = 39/350 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + + PD  TY   ++G C  GR  +A ++L++M E  + P  VT++ LI+ +  +G 
Sbjct: 279 MQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGK 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ + I+P+  TY+ +I     + ++  A+ M      KG  PD IT+N 
Sbjct: 339 FFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNT 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR         L  EM   G+    +TYT+LI    +   +  A  L +  ++ G
Sbjct: 399 LIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSG 458

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + P++V  N L+DG C NG ++ A  + K M + K           V PD  TYN L+ G
Sbjct: 459 VCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICG 518

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHI----------------------------SFNPT 261
              +GK  EA  L ++M  RGI PD I                            SF+P 
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPD 578

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            +T+N LI G CK    D   EL  EM  +GI  D  TY +LI G   VD
Sbjct: 579 VVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVD 628



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 159/320 (49%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P + TY S + G CK+ RL+ A  M       G  P  +T+NTLI GYC    
Sbjct: 349 MLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKR 408

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM + G++    TY  LIH       +  A D+L+EM   G+ P+ +T N 
Sbjct: 409 VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNT 468

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P + TY  LI  L  + + +EA
Sbjct: 469 LLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEA 528

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + ++++IDG C    ++ A  +   M      PD VT+NTL+ G
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITG 588

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G V++   L  +M +RGI  D I       TY  LI G  K    D A ++ +EM+
Sbjct: 589 YCKAGMVDDGLELFCEMGQRGIVADAI-------TYITLIYGFRKVDNIDGALDIFQEMI 641

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  +++ G+ S
Sbjct: 642 SSGVYPDTITIRNMLTGLWS 661



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 158/297 (53%), Gaps = 18/297 (6%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G  PD  T+ + ++G C+  R+++  ++L +M E GLV   +TY TLI G+C  G+L 
Sbjct: 386 TKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLN 445

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-----------GI 111
            A     EM+  G+ P   T N L+  L    K+ +A +M K M +            G+
Sbjct: 446 AAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGV 505

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
            PD  TYNILI G    G   +A  L++EM H+GI P  +TY+S+I  L KQ+R+ EA Q
Sbjct: 506 EPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 565

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           +F++  +K   PD+V FN LI G+C  G ++    L  EM +  +  D +TY TL++G  
Sbjct: 566 MFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFR 625

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           +   ++ A  +  +M   G+ PD I       T   ++ GL   +E + A  +L ++
Sbjct: 626 KVDNIDGALDIFQEMISSGVYPDTI-------TIRNMLTGLWSKEELERAVAMLEDL 675



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  ++ TY + + G C+ G L  A  +L++M  +G+ P  VT NTL+DG C+ G 
Sbjct: 419 MTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGK 478

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 479 LKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHR 538

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITY+ +I+G C+     +A  + D M  K   P ++T+ +LI    K   + + 
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDG 598

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ D + +  LI G     NI+ A  + +EM    V+PD +T   ++ G
Sbjct: 599 LELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTG 658

Query: 230 RCRQGKVEEARRLLDQMK 247
              + ++E A  +L+ ++
Sbjct: 659 LWSKEELERAVAMLEDLQ 676



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 155/320 (48%), Gaps = 16/320 (5%)

Query: 2   KSRGVQPDSYTYGS----FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           KSR  + D   +G       SG  +   L++A  +   M  +  +P+ + +  L+     
Sbjct: 34  KSRDGESDEAGFGGESLKLQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVR 93

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
            G  ++  S   +M    +   A ++ +L+       K+  A     ++ + G  P  +T
Sbjct: 94  MGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVT 153

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N L++G C      +A  L     H+  +P ++T+T+L+  L ++ R++EA  L +  L
Sbjct: 154 FNTLLHGLCVEDRISEALDL----FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRML 209

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKV 236
             G+ P+ + +  ++DG C  G+   A +LL++M+ +  + P+ V YNT++ G  + G+ 
Sbjct: 210 EDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRH 269

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            +A  L  +M+ + I PD +       TYN +I G C +     AE+LL+EM+ + I PD
Sbjct: 270 SDAHNLFIEMQEKEIFPDIV-------TYNCMINGFCISGRWSDAEQLLQEMLERKINPD 322

Query: 297 DNTYFSLIEGIASVDKAAES 316
             T+ +LI       K  E+
Sbjct: 323 VVTFSALINAFVKEGKFFEA 342



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 11/198 (5%)

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +G+        A  L   M+     P+++ +  L+ V+ +  R      L +      
Sbjct: 52  LQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLR 111

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  +   F  L+   C+   +  A S   ++ ++  HP  VT+NTL+HG C + ++ EA 
Sbjct: 112 MPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEAL 171

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  QM +           P  +T+  L+ GLC+      A  LL  M+  G+ P+  TY
Sbjct: 172 DLFHQMCK-----------PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITY 220

Query: 301 FSLIEGIASVDKAAESSN 318
            ++++G+  +     + N
Sbjct: 221 GTIVDGMCKMGDTVSALN 238


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 173/313 (55%), Gaps = 8/313 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+ YTY   V+G CK G +EEA++ + ++ E GL P   TY +LI GYC + +L+ AF
Sbjct: 214 VCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAF 273

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +EM  +G       Y  LIH L + R++ EA D+  +M +    P   TY +LI   
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C      +A +L  EM   GI+P + TYT LI  L  Q +  +A +L    L KG++P++
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +NALI+G+C  G IE A  +++ M+  K+ P+  TYN L+ G C+   V +A  +L++
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNK 452

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  R + PD +       TYN+LI G C++   D A  LL  M  +G+ PD  TY S+I+
Sbjct: 453 MLERKVLPDVV-------TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505

Query: 306 GIASVDKAAESSN 318
            +    +  E+ +
Sbjct: 506 SLCKSKRVEEACD 518



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G + +   Y   + G+C   R++EA  +  +MK++   PT  TY  LI   C    
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM + GI P   TY +LI  L  + K  +A ++L +M EKG++P+ ITYN 
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G  + A  + + M  + + P   TY  LI    K N + +A  +    L + 
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERK 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V +N+LIDG C +GN + A+ LL  M+   + PD+ TY +++   C+  +VEEA 
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEAC 517

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D ++++G+       NP  + Y ALI G CK  + D A  +L +M+SK   P+  T+
Sbjct: 518 DLFDSLEQKGV-------NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570

Query: 301 FSLIEGIASVDKAAESS 317
            +LI G+ +  K  E++
Sbjct: 571 NALIHGLCADGKLKEAT 587



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 163/307 (53%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+SR + P++ TY   + G CK   + +A  +L +M E  ++P  VTYN+LIDG C  GN
Sbjct: 419 MESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+     M  +G++P   TY  +I  L   +++ EA D+   + +KG+ P+ + Y  
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G   +A  + ++M+ K   P  LT+ +LI  L    ++ EA  L E  +  G
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +     LI     +G+ + A+S  ++M      PD  TY T +   CR+G++ +A 
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M+  G+ PD         TY++LI+G     + + A ++L+ M   G  P  +T+
Sbjct: 658 DMMAKMRENGVSPD-------LFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTF 710

Query: 301 FSLIEGI 307
            SLI+ +
Sbjct: 711 LSLIKHL 717



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 158/328 (48%), Gaps = 25/328 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD  TY S + G C+ G  + A R+L  M + GLVP   TY ++ID  C    
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D + ++G+ P    Y  LI       K+ EA  ML++M  K  +P+S+T+N 
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  K+A  L ++M+  G+QPT+ T T LI  L K      A   F+  L+ G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +   I  +C  G +  A  ++ +M    V PD  TY++L+ G    G+   A 
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG------------------DLAE 282
            +L +M+  G +       P++ T+ +LI+ L + + G                  D   
Sbjct: 693 DVLKRMRDTGCE-------PSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVV 745

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASV 310
           ELL +MV   +TP+  +Y  LI GI  V
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEV 773



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 168/361 (46%), Gaps = 61/361 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD +TY S +  +CK  R+EEA  + + +++ G+ P  V Y  LIDGYC  G 
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +  +P + T+N LIH L  + K+ EA  + ++M + G+ P   T  I
Sbjct: 548 VDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G+   A+S   +M+  G +P   TYT+ I    ++ R+++A+ +       G
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF-------------------SLLKEMDRMK------ 215
           + PD+  +++LI G+   G    AF                   SL+K +  MK      
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727

Query: 216 ----------------------------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
                                       V P+  +Y  L+ G C  G +  A ++ D M+
Sbjct: 728 SEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787

Query: 248 R-RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           R  GI       +P+ L +NAL+   CK ++ + A +++ +M+  G  P   +   LI G
Sbjct: 788 RNEGI-------SPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICG 840

Query: 307 I 307
           +
Sbjct: 841 L 841



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 146/290 (50%), Gaps = 26/290 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +PD++TY +F+   C+EGRL +A  M+ +M+ENG+ P   TY++LI GY + G 
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER---------------KMVEAD---DM 102
              AF     M   G  P+  T+  LI  LL  +                M+E D   ++
Sbjct: 688 TNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVEL 747

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFVLS 161
           L++M E  + P++ +Y  LI G C  GN + A  + D M  ++GI P+ L + +L+    
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  +  EA ++ ++ +  G LP +     LI G    G  ER  S+ + + +   + DE+
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDEL 867

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            +  ++ G  +QG VE    L + M++ G K     F+    TY+ LI+G
Sbjct: 868 AWKIIIDGVGKQGLVEAFYELFNVMEKNGCK-----FSSQ--TYSLLIEG 910



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 161/388 (41%), Gaps = 82/388 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +GV P+   Y + + G CK G+++EA  MLE+M     +P ++T+N LI G C  G 
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------------------------- 92
           L+ A    ++MVK G+ PT ST  +LIH LL                             
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642

Query: 93  -------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E ++++A+DM+ +M E G+ PD  TY+ LI GY   G    AF +   M   G
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702

Query: 146 IQPTMLTYTSLIFVL-----SKQ----------NRMIEAD---QLFENFLAKGMLPDIVM 187
            +P+  T+ SLI  L      KQ          + M+E D   +L E  +   + P+   
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKS 762

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +  LI G C  GN+  A  +   M R + + P E+ +N L+   C+  K  EA +++D M
Sbjct: 763 YEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDM 822

Query: 247 KRRGIKPD----------------------------HISFNPTRLTYNALIQGLCKNQEG 278
              G  P                                +    L +  +I G+ K    
Sbjct: 823 ICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLV 882

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   EL   M   G      TY  LIEG
Sbjct: 883 EAFYELFNVMEKNGCKFSSQTYSLLIEG 910



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 14/205 (6%)

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           DS+   + +   CR  N  + F L  ++I       +  Y +L+  L++   + E  Q++
Sbjct: 154 DSVGDALYVLDLCRKMNKDERFELKYKLI-------IGCYNTLLNSLARFGLVDEMKQVY 206

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
              L   + P+I  +N +++G+C  GN+E A   + ++    + PD  TY +L+ G C++
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQR 266

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             ++ A ++ ++M  +G + + ++       Y  LI GLC  +  D A +L  +M     
Sbjct: 267 KDLDSAFKVFNEMPLKGCRRNEVA-------YTHLIHGLCVARRIDEAMDLFVKMKDDEC 319

Query: 294 TPDDNTYFSLIEGIASVDKAAESSN 318
            P   TY  LI+ +   ++ +E+ N
Sbjct: 320 FPTVRTYTVLIKSLCGSERKSEALN 344


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 172/310 (55%), Gaps = 11/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK G    A R+L  M++    P  V Y ++ID  C    
Sbjct: 161 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQ 220

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   +MV QGI P   TY  L+H L  L E K V    +L +M    I+PD + +
Sbjct: 221 VTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT--LLNQMVNSKILPDVVIF 278

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + +++  C+ G   +A  + D MI +G++P ++TYT+L+     Q+ M EA ++F+  + 
Sbjct: 279 STVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR 338

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG  PD++ +  LI+G+C    I++A  L +EM R +  PD  TYNTLM+G C  G++++
Sbjct: 339 KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQD 398

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L  +M  RG  PD +       TY+ L+  LCKN+  + A  LL+ + +  + PD  
Sbjct: 399 AIALFHEMVARGQMPDLV-------TYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQ 451

Query: 299 TYFSLIEGIA 308
            Y  +I+G+ 
Sbjct: 452 VYNIIIDGMC 461



 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 164/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD +TY S V  +C     +  + +L QM  + ++P  V ++T++D  C +G 
Sbjct: 231 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGK 290

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M+++G+ P   TY  L+    ++ +M EA  +   M  KG  PD I+Y  
Sbjct: 291 VTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTT 350

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L +EM  K   P   TY +L++ L    R+ +A  LF   +A+G
Sbjct: 351 LINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARG 410

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V ++ L+D  C N ++E A +LLK ++   ++PD   YN ++ G CR G++E AR
Sbjct: 411 QMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAAR 470

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+       +P+  TYN +I GLCK    + A +L  EM     +PD  TY
Sbjct: 471 DLFSNLSSKGL-------HPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTY 523

Query: 301 FSLIEGI 307
            ++  G 
Sbjct: 524 NTIARGF 530



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 156/316 (49%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV P+ YT    ++  C   R+  A  +L ++ + G  P   T+ TLI G C +G 
Sbjct: 91  MDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGK 150

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+ +G  P   TY  LI+ L        A  +L+ M +    PD + Y  
Sbjct: 151 IGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTS 210

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF+L  +M+ +GI P + TYTSL+  L           L    +   
Sbjct: 211 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 270

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V+F+ ++D  C  G +  A  ++  M +  V PD VTY TLM G C Q +++EA 
Sbjct: 271 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 330

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M R+G  PD IS       Y  LI G CK  + D A  L  EM  K   PD  TY
Sbjct: 331 KVFDMMVRKGFAPDVIS-------YTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTY 383

Query: 301 FSLIEGIASVDKAAES 316
            +L+ G+  V +  ++
Sbjct: 384 NTLMYGLCHVGRLQDA 399



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 157/309 (50%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ + K         +  QM   G+ P   T N LI+ +C+   +  AFS 
Sbjct: 63  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 122

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +T+  LI  L +E K+ EA  +  +M ++G  P+ +TY  LING C+
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 182

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M     QP ++ YTS+I  L K  ++ EA  LF   + +G+ PDI  
Sbjct: 183 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 242

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + +L+   C     +   +LL +M   K+ PD V ++T++   C++GKV EA  ++D M 
Sbjct: 243 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 302

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
           +RG++PD +       TY  L+ G C   E D A ++   MV KG  PD  +Y +LI G 
Sbjct: 303 QRGVEPDVV-------TYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGY 355

Query: 307 --IASVDKA 313
             I  +DKA
Sbjct: 356 CKIHKIDKA 364



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+PD  TY + + G C +  ++EA ++ + M   G  P  ++Y TLI+GYC    
Sbjct: 301 MIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHK 360

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM ++  +P   TYN L++ L    ++ +A  +  EM  +G +PD +TY+I
Sbjct: 361 IDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 420

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+  + ++A +L   +    + P +  Y  +I  + +   +  A  LF N  +KG
Sbjct: 421 LLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG 480

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N +I G C  G +  A  L  EMD     PD  TYNT+  G  +  +   A 
Sbjct: 481 LHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAI 540

Query: 241 RLLDQMKRRGIKPD 254
           +LL++M  RG   D
Sbjct: 541 QLLEEMLARGFSAD 554



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 53/115 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++  + PD   Y   + GMC+ G LE A  +   +   GL P+  TYN +I G C +G 
Sbjct: 441 IEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGL 500

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           L  A     EM      P   TYN +    L   + + A  +L+EM  +G   DS
Sbjct: 501 LNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 169/303 (55%), Gaps = 7/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+QPDS T+ + ++G+C EGR++EA  +  +M     +P  VT+  L+D  C KG +  A
Sbjct: 151 GIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEA 210

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               + M ++G+ P   TYN L++   +  +M +A  + + M  KG  P   +Y+ILING
Sbjct: 211 RCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILING 270

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+     +A +L  +M  K + P  +TY +L+  L   + ++EA +LF+   + GMLP+
Sbjct: 271 YCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPN 330

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  ++ L+DG C +G++E A  LL  M   K+ PD V YN L+ G    GK+E A+ L  
Sbjct: 331 LRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFS 390

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++   GI+       P+  TYN +I+GL K    D A +L R+M   G  PD  +Y  +I
Sbjct: 391 KLFANGIR-------PSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVII 443

Query: 305 EGI 307
           +G 
Sbjct: 444 QGF 446



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 164/305 (53%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   P++ T+   V  +CK+G + EA  + E M E G+ P   TYN L++GYC +  
Sbjct: 182 MAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLE 241

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + MV +G  P+  +Y++LI+     R++ EA  +L +M EK ++P+++TYN 
Sbjct: 242 MNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNT 301

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C   +  +A  L  +M   G+ P + TY+ L+  L K   + EA +L  +   + 
Sbjct: 302 LMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERK 361

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV++N LI G    G +E A  L  ++    + P   TYN ++ G  ++G  +EA 
Sbjct: 362 LEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAY 421

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M+  G  PD  S       YN +IQG  +NQ+   A +L+ EMV +  + D +T+
Sbjct: 422 KLFRKMEDDGFLPDSCS-------YNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTF 474

Query: 301 FSLIE 305
             L++
Sbjct: 475 KMLLD 479



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 157/301 (52%), Gaps = 7/301 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P     G F+  + K+ +      +  QM   G+     T N LI+  C   ++  A S
Sbjct: 83  RPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVS 142

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M K GI P + T+  LI+ L  E ++ EA ++  EM  +  +P+++T+ IL++  C
Sbjct: 143 VLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLC 202

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A  + + M  KG++P + TY +L+     +  M +A ++FE  + KG  P + 
Sbjct: 203 KKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVH 262

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LI+G+C +  I+ A +LL +M   ++ P+ VTYNTLM G C    + EA+ L  +M
Sbjct: 263 SYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKM 322

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G+ P+         TY+ L+ GLCK+   + A +LL  M  + + PD   Y  LI+G
Sbjct: 323 CSSGMLPN-------LRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQG 375

Query: 307 I 307
           +
Sbjct: 376 M 376



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 148/295 (50%), Gaps = 7/295 (2%)

Query: 14  GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73
           G FVS    +  +++A     +M      P+ V     +     K       S  ++M  
Sbjct: 55  GGFVSNNSNDIGIDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDL 114

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
            G+     T N+LI+ L     +  A  +L +M + GI PDS+T+  LING C  G  K+
Sbjct: 115 FGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKE 174

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A  L +EM  +   P  +T+T L+ VL K+  + EA  +FE    KG+ P+I  +NAL++
Sbjct: 175 AVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMN 234

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
           G+C    +  A  + + M      P   +Y+ L++G C+  +++EA+ LL QM  + + P
Sbjct: 235 GYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIP 294

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + +       TYN L+QGLC       A+EL ++M S G+ P+  TY  L++G+ 
Sbjct: 295 NTV-------TYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLC 342



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 102/215 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P++ TY + + G+C    L EA  + ++M  +G++P   TY+ L+DG C  G+
Sbjct: 287 MSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGH 346

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      M ++ + P    YN+LI  + +  K+  A ++  ++   GI P   TYNI
Sbjct: 347 LEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNI 406

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  + G + +A+ L  +M   G  P   +Y  +I    +      A QL +  + + 
Sbjct: 407 MIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRR 466

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
              D   F  L+D    +  I R      ++ +MK
Sbjct: 467 FSADSSTFKMLLDLESHDEIISRFMRESSQIRKMK 501


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 167/312 (53%), Gaps = 9/312 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD  +Y + ++G+CK G L+ ASRML+QM   G  P  VTY++LIDG+C  G +E A 
Sbjct: 178 VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM 237

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              D M+K G  P    YN L+  L     + +A+DML EM  +G  PD ++YN  I+G 
Sbjct: 238 GLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+    KKA ++ D M+ +G  P   +Y+ L+  L K+  + +A  L E    K  + DI
Sbjct: 298 CKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDI 357

Query: 186 VMFNALIDGHCTNGNIERAFSLL-KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +++  L+DG C  G  + A +L  K +D     PD   YN ++   C++ ++++A ++  
Sbjct: 358 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHK 417

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM  R             +T+N L+ GLC +     AE +L  MV +G  PD  TY +L+
Sbjct: 418 QMLERNC--------CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLV 469

Query: 305 EGIASVDKAAES 316
           + +    K+A +
Sbjct: 470 DAMCKCGKSAAA 481



 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 176/334 (52%), Gaps = 33/334 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  QPD++T+   + G+C+  +LE+A ++L +MKE G VP    YN LI GY    +
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF F  EMVK   +PT  TY  ++  L    +  +A  +L EM +KG  P+  TYN+
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           ++ G C      +A  + +EM  +G  P ++TY S I  L K +R+ EA      FLA+ 
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA----RKFLARM 176

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + PD+V +  +I+G C +G+++ A  +L +M      PD VTY++L+ G C+ G+VE A
Sbjct: 177 PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERA 236

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             LLD M + G +P+ +++N                            P  ++YNA I G
Sbjct: 237 MGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDG 296

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           LCK +    A+ +   MV +G TP+ ++Y  L+E
Sbjct: 297 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLVE 330



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 159/304 (52%), Gaps = 10/304 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  P+ YTY   V G+C+E +L+EA +MLE+M   G  P  VTYN+ I G C    
Sbjct: 106 MRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDR 165

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F   + +  + P   +Y  +I+ L     +  A  ML +M  +G  PD +TY+ 
Sbjct: 166 VDEARKF---LARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSS 222

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G  ++A  L D M+  G +P M+ Y SL+  L +   + +A+ +      +G
Sbjct: 223 LIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRG 282

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +NA IDG C    +++A ++   M      P+  +Y+ L+   C++ ++++A 
Sbjct: 283 FTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAI 342

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L++Q + +    D        L Y  L+ GLCK    D A  L  +++ + I   D  +
Sbjct: 343 TLVEQAREKYQIVDI-------LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFF 395

Query: 301 FSLI 304
           ++++
Sbjct: 396 YNVM 399



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKGNLEMAFSF 67
           D   Y   + G+CK GR +EA  +  ++ +  +  P    YN ++D +C +  ++ A   
Sbjct: 356 DILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQI 415

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+++       T+N+L+H L ++ ++ +A+ ML  M ++G +PD +TY  L++  C+
Sbjct: 416 HKQMLERNCCNVV-TWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCK 474

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
           CG +  A  L +E +  G  P ++TY++LI  L  +N   EA  LF          D+ +
Sbjct: 475 CGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL-------DVAL 527

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK-VEEARRLLDQM 246
           +NA+I G+  NG+ +    L  E+    V P+  T+   + G+  + + + +AR L D+ 
Sbjct: 528 WNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRA 587

Query: 247 KRRGIKPDHISFN 259
            + G  PD    N
Sbjct: 588 VKGGFFPDLFVAN 600



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 8/201 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           T+   V G+C + RL +A  ML  M + G +P  VTY TL+D  C  G    A    +E 
Sbjct: 429 TWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEA 488

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           VK G +P   TY+ LI  L+ E    EA  +  ++       D   +N +I GY   G+ 
Sbjct: 489 VKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL-------DVALWNAMILGYAENGSG 541

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIF-VLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
                L  E+I   ++P   T+   I   L K   + +A  LF+  +  G  PD+ + N 
Sbjct: 542 DLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANT 601

Query: 191 LIDGHCTNGNIERAFSLLKEM 211
           LID     G++E A  +   M
Sbjct: 602 LIDVFAKCGDLEEARRIFYSM 622


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++PD YTYGS ++ +C  GR  EA  + + M   G+ P    Y  LI GY  KG 
Sbjct: 299 MSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGA 358

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       + MV+ G+ P    +N++      +  + EA  +  +M ++G+ PD + Y  
Sbjct: 359 LSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGA 418

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++M+++G+ P +  + SL++ L   ++  +A + +   L +G
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V FN ++   CT G + +A  L+  M+R+   P  ++Y TL+ G C  G+++EA 
Sbjct: 479 IRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAA 538

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + LD M   G+KPD         TYN L+ G C+    D A  + REM+  GITP   TY
Sbjct: 539 KSLDVMLSVGLKPDE-------WTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTY 591

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+ +  + +E+
Sbjct: 592 STILHGLFTTRRFSEA 607



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 169/319 (52%), Gaps = 10/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M   G  PD  +Y + + G C E R EEA  +L  M ++      P  V+Y  +I+G+  
Sbjct: 156 MPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFT 215

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++ A++   EM+ +GI P   TY  +I  L   + +  A+ + ++M +KG+ PD+ T
Sbjct: 216 EGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDT 275

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LI+GY   G  K+   + +EM   G++P   TY SL+  L    R  EA  LF++ +
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMI 335

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P++ ++  LI G+ T G +     LL  M    + PD   +N +     ++  ++
Sbjct: 336 RKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMID 395

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  + ++MK++G+ PD ++       Y ALI  LCK    D A     +M+++G+ P+ 
Sbjct: 396 EAMHIFNKMKQQGLSPDVVN-------YGALIDALCKLGRVDDAVLKFNQMMNEGVAPNI 448

Query: 298 NTYFSLIEGIASVDKAAES 316
             + SL+ G+ +VDK  ++
Sbjct: 449 FVFNSLVYGLCTVDKWEKA 467



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 149/295 (50%), Gaps = 7/295 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           + R   P+  +Y   ++G   EG++++A  +  +M + G+ P  VTY T+IDG C    +
Sbjct: 195 QGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVV 254

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A     +M+ +G+ P   TYN LIH  L   K  E   ML+EM   G+ PD  TY  L
Sbjct: 255 DRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSL 314

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +N  C  G  ++A  L D MI KGI+P +  Y  LI   + +  + E   L    +  G+
Sbjct: 315 LNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGL 374

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD  +FN +   +     I+ A  +  +M +  + PD V Y  L+   C+ G+V++A  
Sbjct: 375 SPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVL 434

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             +QM   G+ P+   F       N+L+ GLC   + + A+E   EM+++GI PD
Sbjct: 435 KFNQMMNEGVAPNIFVF-------NSLVYGLCTVDKWEKAKEFYFEMLNQGIRPD 482



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 149/300 (49%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD + +    +   K+  ++EA  +  +MK+ GL P  V Y  LID  C  G 
Sbjct: 369 MVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGR 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G+ P    +N L++ L    K  +A +   EM  +GI PD + +N 
Sbjct: 429 VDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C  G   KA  L D M   G +P +++YT+LI       R+ EA +  +  L+ G
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG 548

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +N L+ G+C  G I+ A+ + +EM R  + P  VTY+T++HG     +  EA+
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAK 608

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   G K  +I        YN ++ GL KN   D A +L + + SK    +  T+
Sbjct: 609 ELYLNMITSG-KQWNI------WIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTF 661



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 154/341 (45%), Gaps = 46/341 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD   YG+ +  +CK GR+++A     QM   G+ P    +N+L+ G C    
Sbjct: 404 MKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDK 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--------------LMER------------ 94
            E A  F  EM+ QGI P    +N ++  L              LMER            
Sbjct: 464 WEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTT 523

Query: 95  ---------KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                    ++ EA   L  M   G+ PD  TYN L++GYCR G    A+ +  EM+  G
Sbjct: 524 LIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG 583

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P ++TY++++  L    R  EA +L+ N +  G   +I ++N +++G   N  ++ AF
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAF 643

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L + +       +  T+N ++    + G+ E+A  L   +   G+ PD         TY
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPD-------VFTY 696

Query: 266 NALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLI 304
             + + L   +EG L E  +L   M   G TP+     +L+
Sbjct: 697 CLIAENLI--EEGYLEEFDDLFSAMEKSGTTPNSRMLNALV 735



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 138/279 (49%), Gaps = 11/279 (3%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100
           + P   TY+ LI  +C  G LE  F+    ++K G        N L+  L   +++ EA 
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 101 DML-KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH---KGIQPTMLTYTSL 156
           D+L K M E G  PD ++YN L+ G+C    A++A  L   M     +   P +++Y  +
Sbjct: 150 DILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIV 209

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I     + ++ +A  LF   + +G+ P++V +  +IDG C    ++RA  + ++M    V
Sbjct: 210 INGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGV 269

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD  TYN L+HG    GK +E  R+L++M   G+KPD         TY +L+  LC N 
Sbjct: 270 KPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDC-------YTYGSLLNYLCNNG 322

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
               A  L   M+ KGI P+   Y  LI G A+    +E
Sbjct: 323 RCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSE 361



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +P   +Y + + G C  GR++EA++ L+ M   GL P   TYNTL+ GYC  G 
Sbjct: 509 MERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGR 568

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EM++ GI P   TY+ ++H L   R+  EA ++   M   G   +   YNI
Sbjct: 569 IDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNI 628

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG  +     +AF L   +  K  Q  + T+  +I  L K  R  +A  LF    + G
Sbjct: 629 ILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYG 688

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+  +  + +     G +E    L   M++    P+    N L+     +G +  A 
Sbjct: 689 LVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAG 748

Query: 241 RLLDQMKRR 249
             L ++  +
Sbjct: 749 AYLCKLDEK 757



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 35/215 (16%)

Query: 136 SLHDEMIHK---GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           SL + MI +    + P   TY+ LI    +  R+      F   L  G   + ++ N L+
Sbjct: 77  SLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLL 136

Query: 193 DGHCTNGNIERAFSLL-KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM---KR 248
            G C    +  A  +L K M  +   PD V+YNTL+ G C + + EEA  LL  M   + 
Sbjct: 137 KGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQG 196

Query: 249 RGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQEGDL 280
           R   P+ +S+                             P  +TY  +I GLCK Q  D 
Sbjct: 197 RSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDR 256

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           AE + ++M+ KG+ PD++TY  LI G  S+ K  E
Sbjct: 257 AEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKE 291



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G Q + + Y   ++G+ K   ++EA ++ + +          T+N +I      G 
Sbjct: 614 MITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGR 673

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      +   G++P   TY L+   L+ E  + E DD+   M + G  P+S   N 
Sbjct: 674 NEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNA 733

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           L+      G+  +A +   ++  K       T   LI +LS+      A  L E +
Sbjct: 734 LVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEKY 789


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 169/312 (54%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD YTY   +SG C+  R+++A ++LE+M E G  P  VTYN+++ G C    
Sbjct: 402 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 461

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+   + +   G      T + LI  L   R++ +A+ +L+EM   G  PD + Y I
Sbjct: 462 VDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTI 521

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+     K+ +   EM+ KG  PT++TY+ +I  L K  R+ +   L +  L +G
Sbjct: 522 LIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 581

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD +++ ++IDG C + + + A+ L K M +    P  VTYN L+   C+  +++EA 
Sbjct: 582 VTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAI 641

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+ M+  G  PD +       TYN++  G  K+ E D A  L + M S+G +P    Y
Sbjct: 642 HLLEVMESDGCLPDTV-------TYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMY 694

Query: 301 FSLIEGIASVDK 312
             L+  + + +K
Sbjct: 695 SLLLTKLVAEEK 706



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   P   TY   V  +CK  R+ +AS +LE M E G  P  VTYNTLI+G+C  GN++ 
Sbjct: 230 RNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 289

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    ++M++    P   TYN+LI     + +  +   +L+EM + G  P+ ITYN L++
Sbjct: 290 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 349

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
              + G    AF+L   M+ +  +P+  T+  +I +  K  ++  A +LF+    +G LP
Sbjct: 350 SLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLP 409

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I G C    I+ A  LL+ M      PD VTYN+++ G C+  +V+EA  + 
Sbjct: 410 DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 469

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + ++  G   D +       T + LI GLCK++  D AE+LLREM   G  PD   Y  L
Sbjct: 470 EVLRNGGYFLDVV-------TCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTIL 522

Query: 304 IEGIASVDKAAES 316
           I G    D+  +S
Sbjct: 523 IHGFCKADQLDKS 535



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 169/344 (49%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY + ++G CK G ++EA  +  QM EN   P   TYN LIDGYC +  
Sbjct: 262 MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQER 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       EMVK G  P   TYN L+  L+   K ++A ++ + M  +   P   T+N+
Sbjct: 322 PQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNL 381

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G    A+ L   M  +G  P + TY  +I    + NR+ +A QL E     G
Sbjct: 382 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 441

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N+++ G C    ++ A+ + + +       D VT +TL+ G C+  ++++A 
Sbjct: 442 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 501

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LL +M+R G  PD +++                             PT +TY+ +I  L
Sbjct: 502 KLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKL 561

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK+        LL+ M+ +G+TPD   Y S+I+G+   D   E+
Sbjct: 562 CKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEA 605



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 160/342 (46%), Gaps = 32/342 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +   +T    +S   ++ + +EA  + +  +     P ++TY+TLI+G+C   + + A
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQA 186

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +   DEM K+GI+P  + YN +I  L    ++  A    ++M ++   P  ITY IL++ 
Sbjct: 187 YRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRNCAPSVITYTILVDA 245

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  + ++MI  G  P ++TY +LI    K   M EA  LF   L     PD
Sbjct: 246 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD 305

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N LIDG+C     +    LL+EM +    P+ +TYNTLM    + GK  +A  L  
Sbjct: 306 VFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQ 365

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M RR  KP H +FN                            P   TYN +I G C+  
Sbjct: 366 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRAN 425

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
             D A +LL  M   G  PD  TY S++ G+   + VD+A E
Sbjct: 426 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYE 467



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTL--------- 51
           M      PD +TY   + G CK+ R ++ +++L++M + G  P  +TYNTL         
Sbjct: 297 MLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGK 356

Query: 52  --------------------------IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                     ID +C  G L++A+     M  +G +P   TYN+
Sbjct: 357 YIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNI 416

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I       ++ +A  +L+ M E G  PD +TYN +++G C+     +A+ +++ + + G
Sbjct: 417 MISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGG 476

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               ++T ++LI  L K  R+ +A++L       G  PD+V +  LI G C    ++++ 
Sbjct: 477 YFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSL 536

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +   EM      P  +TY+ ++   C+  +V +   LL  M  RG+ PD I        Y
Sbjct: 537 AFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAI-------VY 589

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            ++I GLCK+   D A EL + M   G  P   TY  L++ +  V +  E+
Sbjct: 590 TSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEA 640



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 137/254 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++ G   D  T  + + G+CK  RL++A ++L +M+ NG  P  V Y  LI G+C    
Sbjct: 472 LRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQ 531

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ + +F  EM+ +G +PT  TY+++I +L    ++ +   +LK M E+G+ PD+I Y  
Sbjct: 532 LDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTS 591

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+  +  +A+ L+  M   G  PT++TY  L+  L K +R+ EA  L E   + G
Sbjct: 592 VIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDG 651

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD V +N++ DG   +   ++AF L + M      P    Y+ L+     + K+++A 
Sbjct: 652 CLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAM 711

Query: 241 RLLDQMKRRGIKPD 254
            + ++    G   D
Sbjct: 712 EIWEEALEAGADVD 725



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 131/260 (50%), Gaps = 9/260 (3%)

Query: 60  NLEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           +L+ A  F D    Q G   +  T N L+   + ++K  EA D+ K        PDSITY
Sbjct: 111 DLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITY 170

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + LING+C+  + ++A+ L DEM  +GI P    Y ++I  L    R+  A   + + + 
Sbjct: 171 STLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRD-MQ 229

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +   P ++ +  L+D  C +  I  A  +L++M      P+ VTYNTL++G C+ G ++E
Sbjct: 230 RNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 289

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L +QM      PD         TYN LI G CK +      +LL+EMV  G  P+  
Sbjct: 290 AVVLFNQMLENSCSPD-------VFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI 342

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY +L++ +    K  ++ N
Sbjct: 343 TYNTLMDSLVKSGKYIDAFN 362


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 167/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ R  +PD   Y + + G+CK+  + EA     +M   G+ P  +TY+TLI G+C  G 
Sbjct: 263 IEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQ 322

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AFS  +EM  + I P   TY +LI  L  E K+ EA ++L  M ++G+ P+ +TY+ 
Sbjct: 323 LMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYST 382

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G    A  +   M+   + P++ +Y  +I  L K   + EA  L    L K 
Sbjct: 383 LMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKN 442

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V +N+LIDG C +G I  A  L+KE+       D +TY +L+ G C+   +++A 
Sbjct: 443 VVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAI 502

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +MK RGI+P+       + TY ALI GLCK      A++L + ++ KG   D  TY
Sbjct: 503 ALFMKMKERGIQPN-------KYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTY 555

Query: 301 FSLIEGIA 308
             +I G+ 
Sbjct: 556 NVMIGGLC 563



 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 169/306 (55%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q +  +YG+ ++G+CK G    A ++L  +++    P  V YNT+IDG C    + 
Sbjct: 230 AQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVN 289

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+ F  EM  +GI P   TY+ LI    +  +++ A  +L EM  K I PD  TY ILI
Sbjct: 290 EAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILI 349

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G  K+A +L   M  +G++P ++TY++L+        +  A Q+F   +   + 
Sbjct: 350 DALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVN 409

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P +  +N +I+G C   +++ A +LL+EM    V P+ VTYN+L+ G C+ G++  A  L
Sbjct: 410 PSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDL 469

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           + ++  RG   D I       TY +L+ GLCKNQ  D A  L  +M  +GI P+  TY +
Sbjct: 470 MKELHHRGQPADVI-------TYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 522

Query: 303 LIEGIA 308
           LI+G+ 
Sbjct: 523 LIDGLC 528



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 165/293 (56%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD YTY   +  +CKEG+L+EA  +L  M + G+ P  VTY+TL+DGYC  G 
Sbjct: 333 MTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGE 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      MV+  + P+  +YN++I+ L   + + EA ++L+EM  K +VP+++TYN 
Sbjct: 393 VHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNS 452

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L  E+ H+G    ++TYTSL+  L K   + +A  LF     +G
Sbjct: 453 LIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERG 512

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   + ALIDG C    ++ A  L + +       D  TYN ++ G C++G ++EA 
Sbjct: 513 IQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEAL 572

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            +  +M+  G  PD +       T+  +I+ L +  E D AE+LL EM++KG+
Sbjct: 573 AMKSKMEDNGCIPDAV-------TFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 163/308 (52%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PD  T    ++  C  G++  +  +L ++ + G  P  +   TL+ G C KG 
Sbjct: 158 MEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGE 217

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ +  F D++V QG      +Y  L++ L    +   A  +L+ + ++   PD + YN 
Sbjct: 218 VKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNT 277

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+     +A+  + EM  +GI P ++TY++LI       +++ A  L      K 
Sbjct: 278 IIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKN 337

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  LID  C  G ++ A +LL  M +  V P+ VTY+TLM G C  G+V  A+
Sbjct: 338 INPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAK 397

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   M +  +       NP+  +YN +I GLCK +  D A  LLREM+ K + P+  TY
Sbjct: 398 QIFHAMVQTEV-------NPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTY 450

Query: 301 FSLIEGIA 308
            SLI+G+ 
Sbjct: 451 NSLIDGLC 458



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P+   +  ++  L+  +    A  + K+M  KGI PD +T +ILIN +C  G    +FS+
Sbjct: 130 PSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSV 189

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
             +++  G QP  +  T+L+  L  +  + ++    +  +A+G   + V +  L++G C 
Sbjct: 190 LGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCK 249

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G    A  LL+ ++     PD V YNT++ G C+   V EA     +M  RGI PD I 
Sbjct: 250 IGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVI- 308

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
                 TY+ LI G C   +   A  LL EM  K I PD  TY  LI+ +    K  E+ 
Sbjct: 309 ------TYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAK 362

Query: 318 N 318
           N
Sbjct: 363 N 363



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 97/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V P++ TY S + G+CK GR+  A  +++++   G     +TY +L+DG C   N
Sbjct: 438 MLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQN 497

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   +M ++GI P   TY  LI  L    ++  A  + + +  KG   D  TYN+
Sbjct: 498 LDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNV 557

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C+ G   +A ++  +M   G  P  +T+  +I  L +++   +A++L    +AKG
Sbjct: 558 MIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 617

Query: 181 ML 182
           +L
Sbjct: 618 LL 619



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 54/284 (19%)

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
           +GI+P   T ++LI+ L    +M  +  +L ++ + G  P+SIT   L+ G  RC     
Sbjct: 5   KGIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKGETRC----- 59

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLI----------------FVLSKQNRMI-----EADQL 172
           A  L   +  +  +P M   +SL                 F    Q   I     +A   
Sbjct: 60  AIKLPRMIEDRSTRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQ 119

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           F   L     P I+ F  ++       +   A SL K+M+   + PD VT + L++  C 
Sbjct: 120 FNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCH 179

Query: 233 QGKVEEARRLLDQMKRRGIKPDHI----------------------------SFNPTRLT 264
            G++  +  +L ++ + G +P+ I                             F   +++
Sbjct: 180 LGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVS 239

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           Y  L+ GLCK  E   A +LLR +  +   PD   Y ++I+G+ 
Sbjct: 240 YGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLC 283


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 169/306 (55%), Gaps = 11/306 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV PD  TY + + G+CK   ++ A  + +QM E G+ P  VTYNT+IDG C    ++MA
Sbjct: 220 GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMA 279

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +MV +G+ P+  TYN +I  L   + +  A+ + ++M ++G+ PD +TYN +I+G
Sbjct: 280 EGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDG 339

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     KA  +  +MI KG++P  LTYT +I  L K   +  A+ +F+  + KG+ P+
Sbjct: 340 LCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPN 399

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +N LI G+ + G  E     +KEM    + PD  TY  L+   C+ GK  EAR L D
Sbjct: 400 NGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFD 459

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFS 302
            M R+GIK       P+   Y  ++ G  K  +G L+E  +LL  MV+ GI+P+   + +
Sbjct: 460 SMIRKGIK-------PSVTIYGIMLHGYGK--KGALSEMHDLLNLMVANGISPNHRIFNT 510

Query: 303 LIEGIA 308
           +I   A
Sbjct: 511 VICAYA 516



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  ++PD +TYG  +  +CK G+  EA  + + M   G+ P+   Y  ++ GY  KG 
Sbjct: 426 MSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGA 485

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       + MV  GI P    +N +I        + E   +  +M ++G+ P+ +TY  
Sbjct: 486 LSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGT 545

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++MI++G+ P  + + SL++ L   ++  + ++LF   L +G
Sbjct: 546 LIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG 605

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV FN ++   C  G +  A  L+  M  M + PD ++YNTL+ G C   +++EA 
Sbjct: 606 IRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAV 665

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD M   G+KP+ +S       YN L+ G CK    D A  L REM+ KG+TP   TY
Sbjct: 666 KLLDGMVSAGLKPNIVS-------YNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETY 718

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+    + +E+
Sbjct: 719 NTILNGLFRSGRFSEA 734



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 172/340 (50%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P++ TY + + G+CK   ++ A  + ++M + G+ P+ VTYNT+IDG C    
Sbjct: 251 MVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQA 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M+ +G+ P   TYN +I  L   + + +A+ + ++M +KG+ PD++TY I
Sbjct: 311 VDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTI 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+  +  +A  +  +MI KG++P   TY  LI       +  E  Q  +   A  
Sbjct: 371 IIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHD 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  L+D  C NG    A SL   M R  + P    Y  ++HG  ++G + E  
Sbjct: 431 LEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMH 490

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL+ M   GI P+H  FN                            P  +TY  LI  L
Sbjct: 491 DLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDAL 550

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           CK    D A     +M+++G+TP++  + SL+ G+ +VDK
Sbjct: 551 CKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDK 590



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 167/315 (53%), Gaps = 14/315 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASR-MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           G + D       + G+C   R+ EA   +L QM E G     V+YNTL+ G C++   E 
Sbjct: 114 GWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEE 173

Query: 64  AFSFRDEMVK---QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           A      MV        P   +YN++I+    E ++ +A  +  EMG   + PD +TYN 
Sbjct: 174 ARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMG---VSPDVVTYNT 230

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+     +A  +  +M+ KG++P  +TY ++I  L K   +  A+ +F+  + KG
Sbjct: 231 IIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKG 290

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +N +IDG C    ++RA  + ++M    V PD VTYNT++ G C+   +++A 
Sbjct: 291 VKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAE 350

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  QM  +G+KPD+       LTY  +I GLCK Q  D AE + ++M+ KG+ P++ TY
Sbjct: 351 GVFQQMIDKGVKPDN-------LTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTY 403

Query: 301 FSLIEGIASVDKAAE 315
             LI G  S  +  E
Sbjct: 404 NCLIHGYLSTGQWEE 418



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 164/299 (54%), Gaps = 10/299 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y   ++G   EG++++A  +  +M   G+ P  VTYNT+IDG C    ++ A   
Sbjct: 191 PDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDV 247

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +MV++G+ P   TYN +I  L   +++  A+ + ++M +KG+ P ++TYN +I+G C+
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                +A  +  +MI +G++P  +TY ++I  L K   + +A+ +F+  + KG+ PD + 
Sbjct: 308 AQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLT 367

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  +IDG C   +++RA  + ++M    V P+  TYN L+HG    G+ EE  + + +M 
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMS 427

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              ++PD         TY  L+  LCKN + + A  L   M+ KGI P    Y  ++ G
Sbjct: 428 AHDLEPD-------VFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHG 479



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 173/319 (54%), Gaps = 13/319 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM---KENGLVPTAVTYNTLIDGYCN 57
           M   G +    +Y + + G+C   R EEA  +L  M   +++   P  V+YN +I+G+ N
Sbjct: 146 MPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFN 205

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++ A+S   EM   G+ P   TYN +I  L   +++  A+D+ ++M EKG+ P+++T
Sbjct: 206 EGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVT 262

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN +I+G C+      A  +  +M+ KG++P+ +TY ++I  L K   +  A+ +F+  +
Sbjct: 263 YNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMI 322

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G+ PD V +N +IDG C    I++A  + ++M    V PD +TY  ++ G C+   V+
Sbjct: 323 DRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVD 382

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  +  QM  +G+KP++        TYN LI G     + +   + ++EM +  + PD 
Sbjct: 383 RAEGVFQQMIDKGVKPNN-------GTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDV 435

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY  L++ +    K  E+
Sbjct: 436 FTYGLLLDYLCKNGKCNEA 454



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 166/308 (53%), Gaps = 9/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P+   + + +    K   ++E   +  +MK+ GL P  VTY TLID  C  G 
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGR 555

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G+ P    +N L++ L    K  + +++  EM  +GI PD + +N 
Sbjct: 556 VDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNT 615

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C+ G   +A  L D M+  G++P +++Y +LI      +RM EA +L +  ++ G
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +N L+ G+C  G I+ A+ L +EM R  V P   TYNT+++G  R G+  EAR
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735

Query: 241 RL-LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L ++ +K R +         +  TY+ ++ G CKN   D A ++ + + S  +  D  T
Sbjct: 736 ELYVNMIKSRKLW--------SICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIIT 787

Query: 300 YFSLIEGI 307
           +  +I+G+
Sbjct: 788 FNIMIDGL 795



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 162/326 (49%), Gaps = 53/326 (16%)

Query: 30  SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI------------- 76
           +RML     N + P   TY+ +I  +C  G LE+ F+    ++K G              
Sbjct: 70  NRMLRDC-SNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKG 128

Query: 77  -----------------MPTAS------TYNLLIHELLMERKMVEADDMLKEM---GEKG 110
                            MP         +YN L+  L   R+  EA ++L  M    +  
Sbjct: 129 LCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSS 188

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
             PD ++YNI+ING+   G   KA+SL  EM   G+ P ++TY ++I  L K   +  A+
Sbjct: 189 CSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAE 245

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            +F+  + KG+ P+ V +N +IDG C    ++ A  + ++M    V P  VTYNT++ G 
Sbjct: 246 DVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGL 305

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C+   V+ A  +  QM  RG+KPDH+       TYN +I GLCK Q  D AE + ++M+ 
Sbjct: 306 CKAQAVDRAEGVFQQMIDRGVKPDHV-------TYNTIIDGLCKAQAIDKAEGVFQQMID 358

Query: 291 KGITPDDNTYFSLIEGIA---SVDKA 313
           KG+ PD+ TY  +I+G+    SVD+A
Sbjct: 359 KGVKPDNLTYTIIIDGLCKAQSVDRA 384



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 11/306 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P++  + S V G+C   + E+   +  +M   G+ P  V +NT++   C +G 
Sbjct: 566 MINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGR 625

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D MV  G+ P   +YN LI       +M EA  +L  M   G+ P+ ++YN 
Sbjct: 626 VMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNT 685

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC+ G    A+ L  EM+ KG+ P + TY +++  L +  R  EA +L+ N +   
Sbjct: 686 LLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSR 745

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            L  I  ++ ++DG C N   + AF + + +  M +  D +T+N ++ G  + G+ E+A 
Sbjct: 746 KLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAM 805

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE--LLREMVSKGITPDDN 298
            L   +   G+ P  +++   RL    LI      +EG L E   L   M   G  P+ +
Sbjct: 806 DLFAAIPANGLVPSVVTY---RLIAENLI------EEGSLEELDCLFSVMEKSGTAPNSH 856

Query: 299 TYFSLI 304
              +LI
Sbjct: 857 MLNALI 862



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 126/249 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++PD  +Y + + G C   R++EA ++L+ M   GL P  V+YNTL+ GYC  G 
Sbjct: 636 MVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR 695

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EM+++G+ P   TYN +++ L    +  EA ++   M +   +    TY+I
Sbjct: 696 IDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSI 755

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+C+     +AF +   +    +Q  ++T+  +I  L K  R  +A  LF    A G
Sbjct: 756 ILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANG 815

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P +V +  + +     G++E    L   M++    P+    N L+     +G++  A 
Sbjct: 816 LVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAG 875

Query: 241 RLLDQMKRR 249
             L ++  +
Sbjct: 876 AYLSKLDEK 884


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 176/346 (50%), Gaps = 38/346 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+YT+ S + G C+  +++ A  + ++M   G     V+Y TLI+G C  G 
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 61  LEMAFSFRDEMVKQ-------------------------------GIMPTASTYNLLIHE 89
           ++ A     EM +                                G  P+   Y  ++  
Sbjct: 61  IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 120

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
              ERK  EA++ML+EM EKG+ P  +T   +IN YC+ G    A  + + M  +G +P 
Sbjct: 121 RCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 180

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + TY +L+     + ++ +A  L     A G+ PD V +N LI G C +G+IE AF LL+
Sbjct: 181 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 240

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M+   +  D+ TYN L++  C+ G+ ++A  L D ++ RGIKP+ ++F       N+LI
Sbjct: 241 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF-------NSLI 293

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            GLCK+ + D+A + L +MVS G TPD  TY S IE +  +  + E
Sbjct: 294 NGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 339



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 28/338 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +P +  Y + V   C+E + +EA  ML++M E GL P  VT   +I+ YC +G 
Sbjct: 102 MKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR 161

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M  +G  P   TYN L+     E K+ +A  +L +M   G+ PD++TYN+
Sbjct: 162 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 221

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+ + AF L   M   G+     TY +LI  L K  R  +A  LF++   +G
Sbjct: 222 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 281

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V FN+LI+G C +G  + A+  L++M      PD  TY++ +   C+    +E  
Sbjct: 282 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGL 341

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
             + +M ++ +KP  +++                            NP  +TY   ++  
Sbjct: 342 SFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAY 401

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           C     + AE +L EM   G+T D   Y +L++G AS+
Sbjct: 402 CIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASI 439



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 165/363 (45%), Gaps = 45/363 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG +P+ +TY + V G C EG++ +A  +L +M+  G+ P AVTYN LI G C  G+
Sbjct: 172 MKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGH 231

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF     M   G++    TYN LI+ L  + +  +A  +   +  +GI P+++T+N 
Sbjct: 232 IESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNS 291

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN----------RMIEAD 170
           LING C+ G A  A+   ++M+  G  P   TY+S I  L K             M++ D
Sbjct: 292 LINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKD 351

Query: 171 -------------------------QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                    + +   ++ G  PD+V +   +  +C  G +  A 
Sbjct: 352 VKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAE 411

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
           ++L EM +  V  D + YNTLM G    G+ + A  +L QM      P+  ++       
Sbjct: 412 NVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHL 471

Query: 259 NPTRLTYNAL---IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
              RL  + L     G+ K  E      L   M      P+  TY S++EG +   +  E
Sbjct: 472 VRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEE 531

Query: 316 SSN 318
           +++
Sbjct: 532 ATS 534



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 163/387 (42%), Gaps = 80/387 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D YTY + ++ +CK+GR ++A  + + ++  G+ P AVT+N+LI+G C  G 
Sbjct: 242 MEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGK 301

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A+ F ++MV  G  P   TY+  I  L   +   E    + EM +K + P ++ Y I
Sbjct: 302 ADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTI 361

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +  N         EM+  G  P ++TYT+ +     + R+ EA+ +       G
Sbjct: 362 VIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNG 421

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM----------------------------- 211
           +  D + +N L+DGH + G  + A S+LK+M                             
Sbjct: 422 VTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVL 481

Query: 212 --------------------DRMKVH---PDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
                               D MK +   P+  TY++++ G    G+ EEA  L+  MK 
Sbjct: 482 PLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKE 541

Query: 249 RGIKPD----------------------------HISFNPTRLTYNALIQGLCKNQEGDL 280
             I  +                               F P  ++Y  L+ GL    + D 
Sbjct: 542 DSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDK 601

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGI 307
           A+E+      K  +PD+  +  +I+G+
Sbjct: 602 AKEIFMNSRWKDYSPDEIVWKVIIDGL 628



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 17/275 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  TY + +   C EGRL EA  +L +M +NG+    + YNTL+DG+ + G 
Sbjct: 382 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 441

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER--------------KMVEADD---ML 103
            + A S   +M     +P   TY +L+  L+  R              K +E  D   + 
Sbjct: 442 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLF 501

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
             M +   +P+S TY+ ++ G+   G  ++A SL   M    I      YT+L+    K 
Sbjct: 502 DVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKS 561

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            R ++A  L  + +  G +P ++ +  L+ G    G  ++A  +          PDE+ +
Sbjct: 562 KRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVW 621

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
             ++ G  ++G  + +R ++  ++R   +P H ++
Sbjct: 622 KVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 656



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD   FN+LI G+C    ++ A  L  +M       D V+Y TL+ G C  G+++EA
Sbjct: 5   GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L  +M +           P    Y AL++GLC  + G+    +LR M   G  P    
Sbjct: 65  VELFGEMDQ-----------PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRA 113

Query: 300 YFSLIEGIASVDKAAES 316
           Y ++++      KA E+
Sbjct: 114 YAAVVDFRCRERKAKEA 130



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK     P+S TY S + G  ++GR EEA+ ++  MKE+ +      Y  L+  +C    
Sbjct: 504 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKR 563

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+     M++ G +P   +Y  L+  L+ E +  +A ++      K   PD I + +
Sbjct: 564 YLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKV 623

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
           +I+G  + G++  +  +   +     +P+  TY  L
Sbjct: 624 IIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAML 659



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   +Y   +SG+  EG+ ++A  +    +     P  + +  +IDG   KG+
Sbjct: 574 MIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGH 633

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
            +++      + +    P+  TY +L  EL
Sbjct: 634 SDISREMIIMLERMNCRPSHQTYAMLTEEL 663


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 170/308 (55%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+  TY S + G+CK    +  + ++ +M ++ ++P  V + TL+D  C +G 
Sbjct: 240 MIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGM 299

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    D M+++G+ P   TY  L+    +  +M EAD +   M  KG  P+ I+Y+ 
Sbjct: 300 VTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYST 359

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L +EM  + + P ++TY +LI  L    R+ +A  LF   +A G
Sbjct: 360 LINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASG 419

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  L+D  C   ++++A ++LK ++   + PD  +YN ++ G CR G++E A 
Sbjct: 420 QIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAG 479

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   +  +G+ PD         TY  +I GLC   +G LAE  +L REM + G +PDD 
Sbjct: 480 DLFSSLSSKGLHPD-------VWTYTIMINGLC--LQGLLAEATKLFREMNTDGCSPDDC 530

Query: 299 TYFSLIEG 306
           TY  +  G
Sbjct: 531 TYNLITRG 538



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 178/345 (51%), Gaps = 28/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ + G+CK G    A R+L  M +    P  +TYNT+ID       
Sbjct: 170 MVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQ 229

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   EM+ +GI P  STYN +IH L    +      ++ EM +  I+P+ + +  
Sbjct: 230 VNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTT 289

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+ G    A  + D MI +G++P ++TYT+L+     ++ M EAD++F+  + KG
Sbjct: 290 LVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+++ ++ LI+G+C    I++A  L +EM + ++ P+ VTYNTL+HG C  G++ +A 
Sbjct: 350 CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAI 409

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L  +M   G  PD +++                             P   +YN +I G+
Sbjct: 410 ALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGM 469

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           C+  E + A +L   + SKG+ PD  TY  +I G+      AE++
Sbjct: 470 CRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEAT 514



 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 165/301 (54%), Gaps = 7/301 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ T+ + + G+C EG++ EA  + ++M   G  P  VTY TLI G C  GN   A
Sbjct: 139 GHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAA 198

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 MV++   P   TYN +I  L  +R++ EA ++  EM  KGI P+  TYN +I+G
Sbjct: 199 IRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHG 258

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+    K   +L +EM+   I P ++ +T+L+  L K+  +  A  + +  + +G+ PD
Sbjct: 259 LCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPD 318

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + AL+DGHC    ++ A  +   M R    P+ ++Y+TL++G C+  ++++A  L +
Sbjct: 319 VVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFE 378

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M +R + P+ +       TYN LI GLC       A  L  EMV+ G  PD  TY  L+
Sbjct: 379 EMCQRELVPNIV-------TYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILL 431

Query: 305 E 305
           +
Sbjct: 432 D 432



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 155/312 (49%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+  D YT    ++  C   R++    +L ++ + G  P   T+ TLI G C +G 
Sbjct: 100 MDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGK 159

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+MV +G  P   TY  LIH L        A  +L+ M +K   P+ ITYN 
Sbjct: 160 IGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNT 219

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +     +A ++  EMI KGI P + TY S+I  L K +       L    +   
Sbjct: 220 IIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSK 279

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V+F  L+D  C  G +  A  ++  M +  V PD VTY  LM G C + +++EA 
Sbjct: 280 IMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEAD 339

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M R+G  P+ IS       Y+ LI G CK Q  D A  L  EM  + + P+  TY
Sbjct: 340 KVFDTMVRKGCAPNVIS-------YSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTY 392

Query: 301 FSLIEGIASVDK 312
            +LI G+  V +
Sbjct: 393 NTLIHGLCHVGR 404



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 159/309 (51%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ +           + +QM   G+     T   +I+ +C+   ++  FS 
Sbjct: 72  PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             ++ K G  P  +T+  LI  L +E K+ EA  +  +M  +G  P+ +TY  LI+G C+
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN++ A  L   M+ K  +P ++TY ++I  L K  ++ EA  +F   +AKG+ P++  
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N++I G C     +   +L+ EM   K+ P+ V + TL+   C++G V  A  ++D M 
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMI 311

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
           +RG++PD +       TY AL+ G C   E D A+++   MV KG  P+  +Y +LI G 
Sbjct: 312 QRGVEPDVV-------TYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGY 364

Query: 307 --IASVDKA 313
             I  +DKA
Sbjct: 365 CKIQRIDKA 373



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+PD  TY + + G C    ++EA ++ + M   G  P  ++Y+TLI+GYC    
Sbjct: 310 MIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQR 369

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM ++ ++P   TYN LIH L    ++ +A  +  EM   G +PD +TY I
Sbjct: 370 IDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRI 429

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+  +  +A ++   +    + P + +Y  +I  + +   +  A  LF +  +KG
Sbjct: 430 LLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKG 489

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  +I+G C  G +  A  L +EM+     PD+ TYN +  G  R  +   A 
Sbjct: 490 LHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAI 549

Query: 241 RLLDQMKRRGIKPD 254
           +LL +M  RG   D
Sbjct: 550 QLLQEMLGRGFSAD 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 121/245 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  +Y + ++G CK  R+++A  + E+M +  LVP  VTYNTLI G C+ G 
Sbjct: 345 MVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGR 404

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +   EMV  G +P   TY +L+  L   R + +A  MLK +    + PD  +YNI
Sbjct: 405 LRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNI 464

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G CR G  + A  L   +  KG+ P + TYT +I  L  Q  + EA +LF      G
Sbjct: 465 VIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDG 524

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +N +  G   N     A  LL+EM       D  T   ++      G  +  +
Sbjct: 525 CSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVK 584

Query: 241 RLLDQ 245
           ++L +
Sbjct: 585 QILHE 589



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 85/177 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY   +  +CK   L++A  ML+ ++ + L P   +YN +IDG C  G 
Sbjct: 415 MVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGE 474

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P   TY ++I+ L ++  + EA  + +EM   G  PD  TYN+
Sbjct: 475 LEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNL 534

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  G+ R      A  L  EM+ +G      T T ++ +LS         Q+   F+
Sbjct: 535 ITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQILHEFV 591



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 7/186 (3%)

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A S  + M+H    P+++ +  ++  ++          L +   + G+  D+     +I
Sbjct: 57  EALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVI 116

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +  C    ++  FS+L ++ ++   PD  T+ TL+ G C +GK+ EA  L D+M   G  
Sbjct: 117 NSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG-- 174

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
                F P  +TY  LI GLCK      A  LLR MV K   P+  TY ++I+ +    +
Sbjct: 175 -----FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQ 229

Query: 313 AAESSN 318
             E+ N
Sbjct: 230 VNEALN 235


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 7/310 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRG QP  YT+   V+G+CK G+   A   +++M E    P  V+Y+ +ID  C    + 
Sbjct: 202 SRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVN 261

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M   GI PT  TYN LI+ +    +  +A  + KEM E  + PD +T++IL+
Sbjct: 262 EAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILV 321

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G   +A S+  +MI   ++P ++TY+SLI  + K +   E+  L    L++ + 
Sbjct: 322 DALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIR 381

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+V F+  +D  C  G +  A S++  M    + P+ VTYN+LM G C   +++EAR++
Sbjct: 382 PDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKV 441

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D M  +G  PD        L+YN LI+G CK++  D A++L  EM  KG+TP+  T+ +
Sbjct: 442 FDIMVNKGCAPD-------VLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTT 494

Query: 303 LIEGIASVDK 312
           LI G+    +
Sbjct: 495 LISGLCQAGR 504



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G+ P   TY S + GMC  G+ ++AS + ++M E  + P  VT++ L+D  C +G 
Sbjct: 270 MRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGV 329

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S   +M++  + P   TY+ LIH +       E+  +L EM  + I PD +T++I
Sbjct: 330 VLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSI 389

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++ +C+ G   +A S+ + MI +G++P ++TY SL+      ++M EA ++F+  + KG
Sbjct: 390 WVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKG 449

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N LI G+C +  I+ A  L  EM    + P+ +T+ TL+ G C+ G+   A+
Sbjct: 450 CAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAK 509

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G  PD I       TY+ L+ G CK+   D A  L   +    + P+    
Sbjct: 510 ELFKKMGSHGCPPDLI-------TYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVIC 562

Query: 301 FSLIEGIASVDKAAES 316
             L+ G+    K  ++
Sbjct: 563 KILLGGMCKAGKLEDA 578



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 142/250 (56%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            ++PD  TY S + G+CK    +E+S +L +M    + P  VT++  +D +C KG +  A
Sbjct: 344 AMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEA 403

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S  + M+++G+ P   TYN L+    +  +M EA  +   M  KG  PD ++YNILI G
Sbjct: 404 QSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKG 463

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+     +A  L DEM HKG+ P  +T+T+LI  L +  R   A +LF+   + G  PD
Sbjct: 464 YCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPD 523

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ ++ L+ G C +G+++ A +L + + + ++ P+ V    L+ G C+ GK+E+A+ L  
Sbjct: 524 LITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFS 583

Query: 245 QMKRRGIKPD 254
            +    ++PD
Sbjct: 584 SLSIEELQPD 593



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 174/344 (50%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV    YT    ++ +C    +     +L ++ + G  P+ +T+NTLI+G C +G 
Sbjct: 130 MEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGR 189

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D ++ +G  PT  T+ ++++ L    K   A   +K+M E    P+ ++Y+I
Sbjct: 190 IVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSI 249

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +A  L   M   GI PT++TY SLI+ +    +  +A  LF+  L   
Sbjct: 250 IIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWN 309

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD+V F+ L+D  C  G +  A S+  +M ++ + PD VTY++L+HG C+    +E+ 
Sbjct: 310 MKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESS 369

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL++M  R I+PD ++F+                            P  +TYN+L+ G 
Sbjct: 370 TLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGY 429

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C + + D A ++   MV+KG  PD  +Y  LI+G    ++  E+
Sbjct: 430 CLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEA 473



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 114/219 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR ++PD  T+  +V   CK+G + EA  ++  M E GL P  VTYN+L+DGYC    
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQ 434

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D MV +G  P   +YN+LI       ++ EA  +  EM  KG+ P+SIT+  
Sbjct: 435 MDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTT 494

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L  +M   G  P ++TY++L+    K   + EA  LFE      
Sbjct: 495 LISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQ 554

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           + P+ V+   L+ G C  G +E A  L   +   ++ PD
Sbjct: 555 LKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 137/303 (45%), Gaps = 14/303 (4%)

Query: 21  CKEGRL---EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM 77
           CK G     ++A     QM      P    +N L+       + +   S   +M   G+ 
Sbjct: 77  CKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVS 136

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
            +  T  +LI+ L     +     +L ++ + G  P  IT+N LING C  G   +A   
Sbjct: 137 CSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQ 196

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
            D ++ +G QPT+ T+T ++  L K  +   A    +  +     P++V ++ +ID  C 
Sbjct: 197 LDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCK 256

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           N  +  A  L   M  + + P  VTYN+L++G C  G+ ++A  L  +M    +KPD + 
Sbjct: 257 NRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVV- 315

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
                 T++ L+  LCK  EG + E L    +M+   + PD  TY SLI G+       E
Sbjct: 316 ------TFSILVDALCK--EGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKE 367

Query: 316 SSN 318
           SS 
Sbjct: 368 SST 370



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 100/185 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++P+  TY S + G C   +++EA ++ + M   G  P  ++YN LI GYC    
Sbjct: 410 MIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSER 469

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    DEM  +G+ P + T+  LI  L    +   A ++ K+MG  G  PD ITY+ 
Sbjct: 470 IDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYST 529

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G+  +A +L + +    ++P  +    L+  + K  ++ +A +LF +   + 
Sbjct: 530 LLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEE 589

Query: 181 MLPDI 185
           + PD+
Sbjct: 590 LQPDV 594


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG +P+ YTY   +  +CKEGR++EA +ML +M E G+ P+ V +N LI  YC +G 
Sbjct: 316 MRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGM 375

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      M  + + P   TYN LI      + M  A  +L +M E  + PD +TYN 
Sbjct: 376 MEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNT 435

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G    A  L   MI  G  P   T+ + +  L +  R+ EA Q+ E+   K 
Sbjct: 436 LIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKH 495

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   + ALIDG+C  G IE A SL K M   +  P+ +T+N ++ G  ++GKV++A 
Sbjct: 496 VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAM 555

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L++ M +  +K       PT  TYN L++ + K  + D A E+L  ++S G  P+  TY
Sbjct: 556 LLVEDMAKFDVK-------PTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTY 608

Query: 301 FSLIEGIASVDKAAES 316
            + I+   S  +  E+
Sbjct: 609 TAFIKAYCSQGRLEEA 624



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 159/311 (51%), Gaps = 11/311 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD +TY S V G C+   +E A  +   M        AV+Y  LI G C  G L  A  F
Sbjct: 222 PDLFTYTSLVLGYCRNDDVERACGVFCVMPRRN----AVSYTNLIHGLCEAGKLHEALEF 277

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              M + G  PT  TY +L+  L    + +EA  +  EM E+G  P+  TY +LI+  C+
Sbjct: 278 WARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCK 337

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  + +EM+ KG+ P+++ + +LI    K+  M +A  +     +K + P++  
Sbjct: 338 EGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRT 397

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI G C   +++RA +LL +M   K+ PD VTYNTL+HG C  G V+ A RL   M 
Sbjct: 398 YNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMI 457

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           R G  PD       + T+NA +  LC+      A ++L  +  K +  +++ Y +LI+G 
Sbjct: 458 RDGFSPD-------QWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGY 510

Query: 308 ASVDKAAESSN 318
               K   +++
Sbjct: 511 CKAGKIEHAAS 521



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++ +Y + + G+C+ G+L EA     +M+E+G  PT  TY  L+   C  G    A S  
Sbjct: 254 NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLF 313

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM ++G  P   TY +LI  L  E +M EA  ML EM EKG+ P  + +N LI  YC+ 
Sbjct: 314 GEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKR 373

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  + A  +   M  K + P + TY  LI    +   M  A  L    +   + PD+V +
Sbjct: 374 GMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTY 433

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LI G C  G ++ A  L + M R    PD+ T+N  M   CR G+V EA ++L+ +K 
Sbjct: 434 NTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKE 493

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + +K +  +       Y ALI G CK  + + A  L + M+++   P+  T+  +I+G+ 
Sbjct: 494 KHVKANEHA-------YTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLR 546

Query: 309 SVDKAAES 316
              K  ++
Sbjct: 547 KEGKVQDA 554



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 153/316 (48%), Gaps = 40/316 (12%)

Query: 34  EQMKENG--LVPTAVTYNTLIDGYCNKGNLEMAFSF------------------------ 67
           E + +NG  + P  +T NT+++ YC  GN+ +A  F                        
Sbjct: 176 EMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYC 235

Query: 68  RDEMVKQG-----IMP--TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           R++ V++      +MP   A +Y  LIH L    K+ EA +    M E G  P   TY +
Sbjct: 236 RNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTV 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   C  G   +A SL  EM  +G +P + TYT LI  L K+ RM EA ++    + KG
Sbjct: 296 LVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKG 355

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V FNALI  +C  G +E A  +L  M+  KV P+  TYN L+ G CR   ++ A 
Sbjct: 356 VAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAM 415

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M    + PD +       TYN LI GLC+    D A  L R M+  G +PD  T+
Sbjct: 416 ALLNKMVESKLSPDVV-------TYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTF 468

Query: 301 FSLIEGIASVDKAAES 316
            + +  +  + +  E+
Sbjct: 469 NAFMVCLCRMGRVGEA 484



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 151/318 (47%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S+ V P+  TY   + G C+   ++ A  +L +M E+ L P  VTYNTLI G C  G 
Sbjct: 386 MESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGV 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M++ G  P   T+N  +  L    ++ EA  +L+ + EK +  +   Y  
Sbjct: 446 VDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTA 505

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  + A SL   M+ +   P  +T+  +I  L K+ ++ +A  L E+     
Sbjct: 506 LIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFD 565

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N L++      + +RA  +L  +      P+ VTY   +   C QG++EEA 
Sbjct: 566 VKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAE 625

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ ++K  G+  D  SF      YN LI         D A  +LR M   G  P   TY
Sbjct: 626 EMVIKIKNEGVLLD--SF-----IYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTY 678

Query: 301 FSLIEGIASVDKAAESSN 318
             L++ +       E SN
Sbjct: 679 SILMKHLVIEKHKKEGSN 696



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 140/299 (46%), Gaps = 36/299 (12%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G QP+  TY +F+   C +GRLEEA  M+ ++K  G++  +  YN LI+ Y   G L+
Sbjct: 598 SSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLD 657

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD--------------------- 101
            AF     M   G  P+  TY++L+  L++E+   E  +                     
Sbjct: 658 SAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSK 717

Query: 102 --------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
                   + ++M E G VP+  TY+ LING C+ G    AFSL+  M   GI P+ + +
Sbjct: 718 IDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIH 777

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
            SL+    K     EA  L ++ +    L  +  +  LI G     N E+A ++   + R
Sbjct: 778 NSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLR 837

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              + DEV +  L+ G  + G V++   LL+ M++ G +      +P   TY+ L+Q L
Sbjct: 838 CGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCR-----LHPE--TYSMLMQEL 889



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 164/397 (41%), Gaps = 92/397 (23%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K + V+ + + Y + + G CK G++E A+ + ++M     +P ++T+N +IDG   +G 
Sbjct: 491 LKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGK 550

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER-------------------------- 94
           ++ A    ++M K  + PT  TYN+L+ E+L E                           
Sbjct: 551 VQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTA 610

Query: 95  ---------KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                    ++ EA++M+ ++  +G++ DS  YN+LIN Y   G    AF +   M   G
Sbjct: 611 FIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTG 670

Query: 146 IQPTMLTYTSLI--FVLSKQNRM-------------IEADQ--------------LFENF 176
            +P+ LTY+ L+   V+ K  +              I  D               LFE  
Sbjct: 671 CEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKM 730

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
              G +P++  ++ LI+G C  G +  AFSL   M    + P E+ +N+L+   C+ G  
Sbjct: 731 AECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMF 790

Query: 237 EEARRLLD-----------------------QMKRRGIKPDHIS-----FNPTRLTYNAL 268
            EA  LLD                       QM +   +    S     +N   + +  L
Sbjct: 791 GEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVL 850

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           I GL K    D   ELL  M   G      TY  L++
Sbjct: 851 IDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 19/241 (7%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
           + +T++ L+  L+  R +  A+++   M +    P   T+  L+N   R  N   A + H
Sbjct: 85  SLATHHSLLLLLVRHRTLRAAENVRNSMIKSCTSPHDATF--LLN-LLRRMNTAAAAADH 141

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL---AKGMLPDIVMFNALIDGH 195
              +    + ++ +Y  L+  LS+ + + E   L++  L      + P+++  N +++ +
Sbjct: 142 QHQL--AFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSY 199

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C  GN+  A      + R +  PD  TY +L+ G CR   VE A  +   M RR      
Sbjct: 200 CKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRN----- 254

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
                  ++Y  LI GLC+  +   A E    M   G  P   TY  L+  +    +  E
Sbjct: 255 ------AVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELE 308

Query: 316 S 316
           +
Sbjct: 309 A 309


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 176/346 (50%), Gaps = 38/346 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+YT+ S + G C+  +++ A  + ++M   G     V+Y TLI+G C  G 
Sbjct: 179 MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 238

Query: 61  LEMAFSFRDEMVKQ-------------------------------GIMPTASTYNLLIHE 89
           ++ A     EM +                                G  P+   Y  ++  
Sbjct: 239 IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 298

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
              ERK  EA++ML+EM EKG+ P  +T   +IN YC+ G    A  + + M  +G +P 
Sbjct: 299 RCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 358

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + TY +L+     + ++ +A  L     A G+ PD V +N LI G C +G+IE AF LL+
Sbjct: 359 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 418

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M+   +  D+ TYN L++  C+ G+ ++A  L D ++ RGIKP+ ++F       N+LI
Sbjct: 419 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF-------NSLI 471

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            GLCK+ + D+A + L +MVS G TPD  TY S IE +  +  + E
Sbjct: 472 NGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 517



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 166/340 (48%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +P +  Y + V   C+E + +EA  ML++M E GL P  VT   +I+ YC +G 
Sbjct: 280 MKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR 339

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M  +G  P   TYN L+     E K+ +A  +L +M   G+ PD++TYN+
Sbjct: 340 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 399

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+ + AF L   M   G+     TY +LI  L K  R  +A  LF++   +G
Sbjct: 400 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 459

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V FN+LI+G C +G  + A+  L++M      PD  TY++ +   C+    +E  
Sbjct: 460 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGL 519

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
             + +M ++ +KP  +++                            NP  +TY   ++  
Sbjct: 520 SFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAY 579

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           C     + AE +L EM   G+T D   Y +L++G AS+ +
Sbjct: 580 CIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 619



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 168/370 (45%), Gaps = 59/370 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG +P+ +TY + V G C EG++ +A  +L +M+  G+ P AVTYN LI G C  G+
Sbjct: 350 MKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGH 409

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF     M   G++    TYN LI+ L  + +  +A  +   +  +GI P+++T+N 
Sbjct: 410 IESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNS 469

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN----------RMIEAD 170
           LING C+ G A  A+   ++M+  G  P   TY+S I  L K             M++ D
Sbjct: 470 LINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKD 529

Query: 171 -------------------------QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                    + +   ++ G  PD+V +   +  +C  G +  A 
Sbjct: 530 VKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAE 589

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           ++L EM +  V  D + YNTLM G    G+ + A  +L QM         ++  P + TY
Sbjct: 590 NVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMT-------SVASVPNQFTY 642

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGI-----------------TPDDNTYFSLIEGIA 308
             L++ L + +  +    L    V K I                  P+  TY S++EG +
Sbjct: 643 FILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFS 702

Query: 309 SVDKAAESSN 318
              +  E+++
Sbjct: 703 EDGRTEEATS 712



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 163/387 (42%), Gaps = 80/387 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D YTY + ++ +CK+GR ++A  + + ++  G+ P AVT+N+LI+G C  G 
Sbjct: 420 MEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGK 479

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A+ F ++MV  G  P   TY+  I  L   +   E    + EM +K + P ++ Y I
Sbjct: 480 ADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTI 539

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +  N         EM+  G  P ++TYT+ +     + R+ EA+ +       G
Sbjct: 540 VIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNG 599

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM----------------------------- 211
           +  D + +N L+DGH + G  + A S+LK+M                             
Sbjct: 600 VTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVL 659

Query: 212 --------------------DRMKVH---PDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
                               D MK +   P+  TY++++ G    G+ EEA  L+  MK 
Sbjct: 660 PLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKE 719

Query: 249 RGIKPD----------------------------HISFNPTRLTYNALIQGLCKNQEGDL 280
             I  +                               F P  ++Y  L+ GL    + D 
Sbjct: 720 DSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDK 779

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGI 307
           A+E+      K  +PD+  +  +I+G+
Sbjct: 780 AKEIFMNSRWKDYSPDEIVWKVIIDGL 806



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 17/275 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  TY + +   C EGRL EA  +L +M +NG+    + YNTL+DG+ + G 
Sbjct: 560 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 619

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER--------------KMVEADD---ML 103
            + A S   +M     +P   TY +L+  L+  R              K +E  D   + 
Sbjct: 620 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLF 679

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
             M +   +P+S TY+ ++ G+   G  ++A SL   M    I      YT+L+    K 
Sbjct: 680 DVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKS 739

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            R ++A  L  + +  G +P ++ +  L+ G    G  ++A  +          PDE+ +
Sbjct: 740 KRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVW 799

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
             ++ G  ++G  + +R ++  ++R   +P H ++
Sbjct: 800 KVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 834



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 11/183 (6%)

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           P + TYN +I   CR  +  +A      M+  G +P   T+ SLI    + N++  A  L
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDL 210

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           F+    +G   D+V +  LI+G C  G I+ A  L  EMD+    PD   Y  L+ G C 
Sbjct: 211 FDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCN 266

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
             + EE   +L +MK  G +P       TR  Y A++   C+ ++   AEE+L+EM  KG
Sbjct: 267 AERGEEGLLMLRRMKELGWRPS------TR-AYAAVVDFRCRERKAKEAEEMLQEMFEKG 319

Query: 293 ITP 295
           + P
Sbjct: 320 LAP 322



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 11/174 (6%)

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
           H    PT  TY ++I  L ++  +  A +     +  G  PD   FN+LI G+C    ++
Sbjct: 146 HAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVD 205

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A  L  +M       D V+Y TL+ G C  G+++EA  L  +M +           P  
Sbjct: 206 VARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ-----------PDM 254

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             Y AL++GLC  + G+    +LR M   G  P    Y ++++      KA E+
Sbjct: 255 HMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEA 308



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK     P+S TY S + G  ++GR EEA+ ++  MKE+ +      Y  L+  +C    
Sbjct: 682 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKR 741

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+     M++ G +P   +Y  L+  L+ E +  +A ++      K   PD I + +
Sbjct: 742 YLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKV 801

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
           +I+G  + G++  +  +   +     +P+  TY  L
Sbjct: 802 IIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAML 837



 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   +Y   +SG+  EG+ ++A  +    +     P  + +  +IDG   KG+
Sbjct: 752 MIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGH 811

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
            +++      + +    P+  TY +L  EL
Sbjct: 812 SDISREMIIMLERMNCRPSHQTYAMLTEEL 841


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 169/312 (54%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QP + T+ + + G+C EG++ EA ++ ++M   G  P  +TY TLI+G C  GN   A
Sbjct: 119 GYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTA 178

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F   M ++   PT   Y+ +I  L  +R++ EA  +  +M  KGI P++ TY+ LI+G
Sbjct: 179 IRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHG 238

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G+ K+A  L   MIH+ I P  LT+ +L+  L K+  +++A  + +  +   + PD
Sbjct: 239 LCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPD 298

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N+L+DGHC    + +  ++   M R    P  ++Y TL++G C+   +++A  L +
Sbjct: 299 VVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFE 358

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M ++G+ PD +       TYN LI GLC       A  L  EMV  G  PD  TY  L 
Sbjct: 359 EMSQQGLIPDTV-------TYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILF 411

Query: 305 EGIASVDKAAES 316
           + +    + AE+
Sbjct: 412 DYLCKNHRLAEA 423



 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 175/345 (50%), Gaps = 28/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TYG+ ++G+CK G    A R L  M++    PT V Y+T+ID  C    
Sbjct: 150 MTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQ 209

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S   +M+ +GI P   TY+ LIH L +     EA  +   M  + I+PD +T+N 
Sbjct: 210 LTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNT 269

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+ G   KA  + D MI   ++P ++TY SL+     ++ M +   +F+  + KG
Sbjct: 270 LVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKG 329

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P ++ +  LI+G+C    +++A  L +EM +  + PD VTYNTL+HG C  G++ +A 
Sbjct: 330 CVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAI 389

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            L  +M   G  PD +++                            +P    Y+ ++ G+
Sbjct: 390 ALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGM 449

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           C+  E + A +L  ++ SKG+ PD  TY  +I G+      AE+S
Sbjct: 450 CRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEAS 494



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 171/305 (56%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+ + V  +CKEG + +A  +++ M ++ L P  VTYN+L+DG+C +  
Sbjct: 255 MIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSE 314

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +    +  D MV++G +P+  +Y  LI+     + M +A  + +EM ++G++PD++TYN 
Sbjct: 315 MGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNT 374

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A +L  EM+  G  P ++TY  L   L K +R+ EA  L +      
Sbjct: 375 LIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTN 434

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI +++ ++DG C  G +E A  L  ++    +HPD  TY  +++G C+QG + EA 
Sbjct: 435 LDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEAS 494

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G  P+         TYN + +G  +N E   A +L +EM+S+G + D +T 
Sbjct: 495 KLFGEMDENGCSPN-------ACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTT 547

Query: 301 FSLIE 305
             L+E
Sbjct: 548 TLLVE 552



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 163/308 (52%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+++TY S + G+C  G  +EA R+   M    ++P  +T+NTL+D  C +G 
Sbjct: 220 MLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGM 279

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M++  + P   TYN L+    +  +M +  ++   M  KG VP  I+Y  
Sbjct: 280 VVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTT 339

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L +EM  +G+ P  +TY +LI  L    R+ +A  LF   +  G
Sbjct: 340 LINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYG 399

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  L D  C N  +  A  LLK ++   + PD   Y+ +M G CR G++E AR
Sbjct: 400 QIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAAR 459

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L  ++  +G+ PD       R TY  +I GLC  Q+G LAE  +L  EM   G +P+  
Sbjct: 460 DLFSKLSSKGLHPD------VR-TYTIMINGLC--QQGLLAEASKLFGEMDENGCSPNAC 510

Query: 299 TYFSLIEG 306
           TY  +  G
Sbjct: 511 TYNLITRG 518



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 167/337 (49%), Gaps = 28/337 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ + +         + +QM   G+     T N LI+ +C+   L  AFS 
Sbjct: 52  PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 111

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P+ +T+  LI  L +E K+ EA  +  +M  +G  PD +TY  LING C+
Sbjct: 112 LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 171

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A      M  +  +PT++ Y+++I  L K  ++ EA  LF + LAKG+ P+   
Sbjct: 172 VGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFT 231

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +++LI G C  G+ + A  L   M   K+ PD++T+NTL+   C++G V +A  ++D M 
Sbjct: 232 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMI 291

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           +  +KPD +++N                            P+ ++Y  LI G CK Q  D
Sbjct: 292 QSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMD 351

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A  L  EM  +G+ PD  TY +LI G+  V +  ++
Sbjct: 352 KAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDA 388



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 139/319 (43%), Gaps = 31/319 (9%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           +++A  +  +M      P+ V ++ L+       +     S   +M   GI     T N+
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+      ++  A  +L ++ + G  P + T+  LI G C  G   +A  L D+M  +G
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            QP +LTY +LI  L K      A +   +   +   P +V+++ +ID  C +  +  A 
Sbjct: 155 FQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEAL 214

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
           SL  +M    + P+  TY++L+HG C  G  +EA RL   M  R I PD ++FN      
Sbjct: 215 SLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDAL 274

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P  +TYN+L+ G C   E      +   MV KG  P  
Sbjct: 275 CKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSV 334

Query: 298 NTYFSLIEG---IASVDKA 313
            +Y +LI G   I  +DKA
Sbjct: 335 ISYTTLINGYCKIQIMDKA 353



 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 35/196 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTL--------- 51
           M  +G+ PD+ TY + + G+C  GRL +A  +  +M   G +P  VTY  L         
Sbjct: 360 MSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHR 419

Query: 52  --------------------------IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                     +DG C  G LE A     ++  +G+ P   TY +
Sbjct: 420 LAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTI 479

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I+ L  +  + EA  +  EM E G  P++ TYN++  G+ R     +A  L  EM+ +G
Sbjct: 480 MINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRG 539

Query: 146 IQPTMLTYTSLIFVLS 161
               + T T L+ +LS
Sbjct: 540 FSIDVSTTTLLVEMLS 555


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR + PD       +  +  +  + +A  +   M E G+ PT VTYNTL+D YC  G 
Sbjct: 497 IKSR-LSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK 555

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G  P   TYN+LI+ L  + +  +A  ++ EM + G+   + TYN 
Sbjct: 556 VQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP 615

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY   G   +A SL +EM+ KG  PT+ TY S I+ L K  RM +A Q   + LA  
Sbjct: 616 LIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANN 675

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V +N LI G+C  GN+ +AF L  E+  + + P  VTYNTL+ G CRQG++E A+
Sbjct: 676 LLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQ 735

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   GI PD +       TY  L+ G CK     +A+E   EM+ +G+  D   Y
Sbjct: 736 QLKVEMINEGIAPDIV-------TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAY 788

Query: 301 FSLIEG 306
            + I G
Sbjct: 789 ATRIVG 794



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/287 (36%), Positives = 156/287 (54%), Gaps = 7/287 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P+  TY   ++G+ K+G  E+A  ++ +M + GL  +A TYN LI GY NKG 
Sbjct: 566 MQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGL 625

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S ++EMV +G  PT +TYN  I+ L    +M +A   L +M    ++PD ++YN 
Sbjct: 626 LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNT 685

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR GN  KAF L DE+    + PT++TY +L+  L +Q  +  A QL    + +G
Sbjct: 686 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 745

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +  L++G C  G++  A     EM    +  D   Y T + G  + G    A 
Sbjct: 746 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF 805

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
            L ++M  +G  PD I        YN ++ GLCK    + A ELL++
Sbjct: 806 SLQEEMLAKGFPPDLI-------IYNVVVDGLCKLGNLEEASELLQK 845



 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 28/286 (9%)

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           + LI  Y  K  +E   S  D+M+K  + P     N ++  L  +  M +A ++ + MGE
Sbjct: 474 DLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 533

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
            GI P  +TYN L++ YC+ G  ++   L  EM  +G  P  +TY  LI  LSK+    +
Sbjct: 534 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQ 593

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  L    L  G+      +N LI G+   G +  A SL +EM      P   TYN+ ++
Sbjct: 594 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIY 653

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------P 260
           G C+ G++ +A + L  M    + PD +S+N                            P
Sbjct: 654 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 713

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           T +TYN L+ GLC+  E ++A++L  EM+++GI PD  TY  L+ G
Sbjct: 714 TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNG 759



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 127/253 (50%), Gaps = 11/253 (4%)

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-DMLKEMGEKGIVPDSITYNIL---IN 123
           R E V   I+   +  NL+     +  +++ A+   + ++   G V   ++  IL   I 
Sbjct: 419 RSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIW 478

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            Y +    ++  S+ D+MI   + P +     ++ +L  ++ M +A +++      G+ P
Sbjct: 479 VYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKP 538

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            IV +N L+D +C  G +++   LL EM R    P++VTYN L++G  ++G+ E+A+ L+
Sbjct: 539 TIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLI 598

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M + G+K    ++NP  L Y    +GL        A  L  EMV KG +P   TY S 
Sbjct: 599 GEMLKTGLKVSAYTYNP--LIYGYFNKGLLAE-----ALSLQEEMVLKGASPTVATYNSF 651

Query: 304 IEGIASVDKAAES 316
           I G+  + + +++
Sbjct: 652 IYGLCKLGRMSDA 664



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ PD  TY   V+G CK G L  A    ++M   GL   +  Y T I G    G+
Sbjct: 741 MINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGD 800

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
              AFS ++EM+ +G  P    YN+++  L     + EA ++L++ G
Sbjct: 801 TSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKDG 847


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 166/293 (56%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD YT+   V  +CK+G +  A  ML  M + G++P  VTY++L+DGYC    
Sbjct: 260 MVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNE 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P A +YN++I+ L   + + EA  + KEM  KGI PD++TYN 
Sbjct: 320 VNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A+ L DEM + GI   +LTY SLI VL K + + +A  L +    +G
Sbjct: 380 LIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQG 439

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N LIDG C  G ++ A  + +++       +  TYN +++G C++G   EA 
Sbjct: 440 IQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAE 499

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            LL +M+  GI PD +       TY  +I+ L +  E + AE+LLREM+ +G+
Sbjct: 500 VLLSKMENNGIIPDAV-------TYETIIRALFRKDENEKAEKLLREMIIRGL 545



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +G+ P   T+   V+  C  G +  A  +  ++ + G  PT +T+NTLI+G C  G 
Sbjct: 85  LELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A  F D ++  G      +Y  LI+ L    +   A  MLK++  K +  D + YNI
Sbjct: 145 LKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNI 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN  C+      A+ L+ EMI K I P ++T+ SLI       ++ EA  LF   + K 
Sbjct: 205 IINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKN 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  F+ L+D  C +GNI RA ++L  M +  V PD VTY++LM G C   +V +A+
Sbjct: 265 INPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAK 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M R G+ P   S       YN +I GL K +  D A  L +EM  KGI PD  TY
Sbjct: 325 HVFSTMSRLGVAPHAHS-------YNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTY 377

Query: 301 FSLIEGIASVDKAAES 316
            SLI+G+  + + + +
Sbjct: 378 NSLIDGLCKLGRISYA 393



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 167/312 (53%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ + PD  T+ S + G C  G+L+EA  +  +M    + P   T++ L+D  C  GN
Sbjct: 225 MITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGN 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +    M+KQG++P   TY+ L+    +  ++ +A  +   M   G+ P + +YNI
Sbjct: 285 ITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNI 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING  +     +A SL  EM  KGI P  +TY SLI  L K  R+  A QL +     G
Sbjct: 345 MINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI+ +N+LID  C N +I++A +L+K++    + P   TYN L+ G C+ G+++ A+
Sbjct: 405 IPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQ 464

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   +  +G       ++    TYN +I GLCK    + AE LL +M + GI PD  TY
Sbjct: 465 DVFQDLLIKG-------YSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTY 517

Query: 301 FSLIEGIASVDK 312
            ++I  +   D+
Sbjct: 518 ETIIRALFRKDE 529



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 167/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ + V  D   Y   ++ +CK+  + +A ++  +M    + P  VT+N+LI G+C  G 
Sbjct: 190 IEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQ 249

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF    EMV + I P   T+++L+  L  +  +  A +ML  M ++G++PD +TY+ 
Sbjct: 250 LKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSS 309

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC      KA  +   M   G+ P   +Y  +I  L K   + EA  LF+    KG
Sbjct: 310 LMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKG 369

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +N+LIDG C  G I  A+ L+ EM    +  D +TYN+L+   C+   +++A 
Sbjct: 370 IAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAI 429

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ ++K +GI+       P+  TYN LI GLCK      A+++ ++++ KG + +  TY
Sbjct: 430 ALVKKIKDQGIQ-------PSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTY 482

Query: 301 FSLIEGIA 308
             +I G+ 
Sbjct: 483 NIMINGLC 490



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 169/339 (49%), Gaps = 42/339 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P + T+ + ++G+C  G+L+EA    + +   G     V+Y TLI+G C  G    A
Sbjct: 124 GYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAA 183

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                ++  + +      YN++I+ L  ++ + +A  +  EM  K I PD +T+N LI G
Sbjct: 184 LQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILG 243

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G  K+AF L  EM+ K I P + T++ L+  L K   +  A  +    + +G++PD
Sbjct: 244 FCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPD 303

Query: 185 IVMFNALIDGHC------------------------------TNG-----NIERAFSLLK 209
           +V +++L+DG+C                               NG      ++ A SL K
Sbjct: 304 VVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFK 363

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM    + PD VTYN+L+ G C+ G++  A +L+D+M   GI  D        LTYN+LI
Sbjct: 364 EMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPAD-------ILTYNSLI 416

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             LCKN   D A  L++++  +GI P   TY  LI+G+ 
Sbjct: 417 DVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLC 455



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 9/278 (3%)

Query: 43  PTAVTYNTLIDGY--CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100
           P+ V +N ++      N  +   A S   ++  +GI PT  T+N+L++      +M  A 
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAF 114

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
            +  ++ + G  P +IT+N LING C  G  K+A   HD +I  G     ++Y +LI  L
Sbjct: 115 SIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGL 174

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            K      A Q+ +    K +  D+VM+N +I+  C +  +  A+ L  EM   ++ PD 
Sbjct: 175 CKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDV 234

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           VT+N+L+ G C  G+++EA  L  +M  + I PD         T++ L+  LCK+     
Sbjct: 235 VTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPD-------VYTFSILVDALCKDGNITR 287

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           A+ +L  M+ +G+ PD  TY SL++G   V++  ++ +
Sbjct: 288 AKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKH 325



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 108/182 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD+ TY S + G+CK GR+  A +++++M  NG+    +TYN+LID  C   +
Sbjct: 365 MCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHH 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   ++  QGI P+  TYN+LI  L    ++  A D+ +++  KG   ++ TYNI
Sbjct: 425 IDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNI 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A  L  +M + GI P  +TY ++I  L +++   +A++L    + +G
Sbjct: 485 MINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRG 544

Query: 181 ML 182
           +L
Sbjct: 545 LL 546


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 177/309 (57%), Gaps = 7/309 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV   +YT    ++G+CK+G++ +A ++ E +   GLVPT V YNTLI+GYC   +L  
Sbjct: 328 KGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRG 387

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF   ++M  + I P   TYN LI+ L     + +A+D++ EM + G+ P   T+N LI+
Sbjct: 388 AFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLID 447

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            Y   G  +K F++  +M  KGI+  ++++ S++    K  ++ EA  + ++ + K + P
Sbjct: 448 AYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAP 507

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +  ++N++ID +  +G+ E+A  L+++M    V    VTYN L+ G CR  +++EA  L+
Sbjct: 508 NAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELI 567

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             ++ +G++PD +S       YN +I   C   + D A ELL+EM   GI P   T  +L
Sbjct: 568 YTLRNQGLRPDVVS-------YNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTL 620

Query: 304 IEGIASVDK 312
           +  +AS  +
Sbjct: 621 VSALASAGR 629



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 173/327 (52%), Gaps = 28/327 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+++Y   ++G+ + G+  +A ++ ++M + G+ P  +TYNT+IDG+   G+LE  F  
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRL 251

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RD+M+  G  P   TYN+L+  L    +M E   ++ EM    ++PD  TY+IL +G  R
Sbjct: 252 RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G ++   SL  E + KG+     T + L+  L K  ++ +A Q+FE  +  G++P  V+
Sbjct: 312 TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C   ++  AF + ++M    + PD +TYN L++G C+   V +A  L+ +M+
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           + G+ P   +FN                               +++ ++++  CKN +  
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG 306
            A  +L +M+ K + P+   Y S+I+ 
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDA 518



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 182/342 (53%), Gaps = 31/342 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+  TY   +SG+C+ GR++E   ++++M  + ++P   TY+ L DG    G  +  
Sbjct: 259 GPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTM 318

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   E +K+G+M  A T ++L++ L  + K+ +A  + + +   G+VP ++ YN LING
Sbjct: 319 LSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLING 378

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+  + + AF + ++M  + I+P  +TY +LI  L K   + +A+ L       G+ P 
Sbjct: 379 YCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPS 438

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  FN LID + T G +E+ F++L +M +  +  D +++ +++   C+ GK+ EA  +LD
Sbjct: 439 VETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILD 498

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  + + P+   +N                             + +TYN L++GLC++ 
Sbjct: 499 DMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           + D AEEL+  + ++G+ PD  +Y ++I    +    DKA E
Sbjct: 559 QIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 600



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 159/298 (53%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+CK   + +A  ++ +M+++G+ P+  T+NTLID Y   G 
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 454

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F+   +M ++GI     ++  ++       K+ EA  +L +M  K + P++  YN 
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G+ ++A  L ++M + G+  +++TY  L+  L + +++ EA++L      +G
Sbjct: 515 IIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 574

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I   C  G+ ++A  LL+EM++  + P   T +TL+      G+V +  
Sbjct: 575 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDME 634

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            L  QM  + ++       P+   Y  ++    + +       L +EM  KGI  DD 
Sbjct: 635 CLYQQMLHKNVE-------PSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDDT 685



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 144/297 (48%), Gaps = 9/297 (3%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ--GIMPTAS 81
           GR  +       +   G  P    +N ++      G+L++A +    M +      P A 
Sbjct: 136 GRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAF 195

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           +YN++I  L    K  +A  +  EM + G+ P+ ITYN +I+G+ + G+ +  F L D+M
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQM 255

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +H G +P ++TY  L+  L +  RM E   L +   +  MLPD   ++ L DG    G  
Sbjct: 256 LHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGES 315

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           +   SL  E  +  V     T + L++G C+ GKV +A+++ + +        H    PT
Sbjct: 316 QTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLV-------HTGLVPT 368

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + YN LI G C+ ++   A  +  +M S+ I PD  TY +LI G+  ++   ++ +
Sbjct: 369 TVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAED 425



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 9/242 (3%)

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +P+ S+ NLL+  LL   +  +       +   G  PD+  +N ++      G+   A +
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 137 LHDEMIHK--GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
           +   M        P   +Y  +I  L +  +  +A ++F+  +  G+ P+ + +N +IDG
Sbjct: 179 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           H   G++E  F L  +M      P+ VTYN L+ G CR G+++E R L+D+M    + PD
Sbjct: 239 HVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPD 298

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
                    TY+ L  GL +  E      L  E + KG+     T   L+ G+    K A
Sbjct: 299 G-------FTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVA 351

Query: 315 ES 316
           ++
Sbjct: 352 KA 353


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++ + +TY S +   C  GR ++ +++L  M    + P  VT++ LID    +G 
Sbjct: 291 METKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGK 350

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM+ +GI P   TYN LI+ L  ++++ EA+ M+  M  KG  PD  TYNI
Sbjct: 351 LTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNI 410

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+         L  +M  +G+    +TY++LI    +  ++I A ++F+  +++G
Sbjct: 411 LINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQG 470

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P I+ +  L+DG C NG +E A  +L +M + K+  D   YN ++HG C   KV++A 
Sbjct: 471 VHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAW 530

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+K D  S       YN ++ GLCK      A+ L R+M   G  PD  TY
Sbjct: 531 SLFCSLPSKGVKRDIQS-------YNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTY 583

Query: 301 FSLIEG 306
            +LI  
Sbjct: 584 NTLIRA 589



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G QP+ +TYG  ++ MCK G    A  +L +M+   + P  VTY  +ID  C  G 
Sbjct: 221 MMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGR 280

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A SF  EM  +GI     TYN LI       +  +   +L++M  + I P+ +T++ 
Sbjct: 281 LDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSA 340

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G   +A  L++EMI +GI+P  +TY SLI+ L    R+ EA+Q+ +  ++KG
Sbjct: 341 LIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKG 400

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI  +N LI+G C    ++    L ++M    +  D VTY+TL+ G C+  K+  A+
Sbjct: 401 CDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAK 460

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M  +G+       +P  +TY  L+ GLC N E + A  +L +M    +  D   Y
Sbjct: 461 KVFQEMVSQGV-------HPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIY 513

Query: 301 FSLIEGIASVDKAAES 316
             +I G+ + +K  ++
Sbjct: 514 NIIIHGMCNANKVDDA 529



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P++ T+ + ++G+C EGR+ EA  +++ M  +  VP  +T NT+++G C K  +  A
Sbjct: 155 GYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEA 214

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M+  G  P   TY  +++ +        A D+L++M  + I P  +TY I+I+ 
Sbjct: 215 VDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDN 274

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A S   EM  KGI+  + TY SLI       R  +  QL  + + + + P+
Sbjct: 275 LCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPN 334

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ALID     G +  A  L  EM    + P+ +TYN+L++G C   +++EA +++D
Sbjct: 335 VVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMD 394

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +G  PD         TYN LI G CK ++ D    L R+M  +G+  D  TY +LI
Sbjct: 395 LMVSKGCDPDI-------WTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLI 447

Query: 305 EGIASVDK 312
           +G     K
Sbjct: 448 QGFCQSRK 455



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 163/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R ++P   TY   +  +CK+GRL++A     +M+  G+     TYN+LI  +C+ G 
Sbjct: 256 MEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGR 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       +M+ + I P   T++ LI  L+ E K+ EA D+  EM  +GI P++ITYN 
Sbjct: 316 WDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNS 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C      +A  + D M+ KG  P + TY  LI    K  ++ +  +LF     +G
Sbjct: 376 LIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+ D V ++ LI G C +  +  A  + +EM    VHP  +TY  L+ G C  G++EEA 
Sbjct: 436 MIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEAL 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LDQM +  ++ D I        YN +I G+C   + D A  L   + SKG+  D  +Y
Sbjct: 496 GILDQMHKCKMELD-IGI------YNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSY 548

Query: 301 FSLIEGIASVDKAAES 316
             ++ G+      +E+
Sbjct: 549 NIMLSGLCKRSSLSEA 564



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 167/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+  D YT    ++  C+  +L  A   + ++ + G  P  VT+NTL++G C +G 
Sbjct: 116 MELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGR 175

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D MV    +P   T N +++ L ++ ++ EA D++  M   G  P+  TY  
Sbjct: 176 VFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGP 235

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ GN   A  L  +M H+ I+P ++TYT +I  L K  R+ +A   F     KG
Sbjct: 236 ILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKG 295

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  ++  +N+LI   C+ G  +    LL++M   K+ P+ VT++ L+    ++GK+ EA+
Sbjct: 296 IKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAK 355

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M  RGI+P+ I       TYN+LI GLC ++  D A +++  MVSKG  PD  TY
Sbjct: 356 DLYNEMITRGIEPNTI-------TYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTY 408

Query: 301 FSLIEGIA 308
             LI G  
Sbjct: 409 NILINGFC 416



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 138/254 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++P++ TY S + G+C + RL+EA++M++ M   G  P   TYN LI+G+C    
Sbjct: 361 MITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQ 420

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       +M  +G++    TY+ LI      RK++ A  + +EM  +G+ P  +TY I
Sbjct: 421 VDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAI 480

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  ++A  + D+M    ++  +  Y  +I  +   N++ +A  LF +  +KG
Sbjct: 481 LLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKG 540

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI  +N ++ G C   ++  A +L ++M      PD  TYNTL+    R   +  + 
Sbjct: 541 VKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSV 600

Query: 241 RLLDQMKRRGIKPD 254
           +L+++MKR G   D
Sbjct: 601 QLIEEMKRCGFSSD 614



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 147/292 (50%), Gaps = 7/292 (2%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           ++A  + + M  +  +PT + +N L          ++  +   +M  +GI     T N++
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIM 131

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           I+     RK+  A   + ++ + G  P+++T+N L+NG C  G   +A  L D M+    
Sbjct: 132 INCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQH 191

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P ++T  +++  L  ++R+ EA  L    +A G  P+   +  +++  C +GN   A  
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALD 251

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           LL++M+  K+ P  VTY  ++   C+ G++++A     +M+ +GIK +         TYN
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANV-------FTYN 304

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +LI   C     D   +LLR+M+++ ITP+  T+ +LI+ +    K  E+ +
Sbjct: 305 SLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKD 356



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 115/227 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD +TY   ++G CK  ++++  R+  +M   G++   VTY+TLI G+C    
Sbjct: 396 MVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRK 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A     EMV QG+ P   TY +L+  L    ++ EA  +L +M +  +  D   YNI
Sbjct: 456 LIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNI 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C       A+SL   +  KG++  + +Y  ++  L K++ + EAD LF      G
Sbjct: 516 IIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDG 575

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
             PD   +N LI  H    +I  +  L++EM R     D  T   +M
Sbjct: 576 YEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVM 622



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D+ TY + + G C+  +L  A ++ ++M   G+ P  +TY  L+DG C+ G 
Sbjct: 431 MSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGE 490

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    D+M K  +      YN++IH +    K+ +A  +   +  KG+  D  +YNI
Sbjct: 491 LEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNI 550

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C+  +  +A +L  +M   G +P   TY +LI    + N +  + QL E     G
Sbjct: 551 MLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCG 610

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
              D      ++D   ++G ++++F
Sbjct: 611 FSSDASTVKIVMD-MLSSGELDKSF 634


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 175/327 (53%), Gaps = 28/327 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++++Y   ++GM + GR  +A  + ++M E  ++P  +TYNT+IDG+   G+LE  FS 
Sbjct: 194 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSL 253

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RD+MV  G+ P A TYN+L+  L    +M E   +L EM  + +VPD  TY+IL +G  R
Sbjct: 254 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 313

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G++K   SL  + +  G+     T + L+  L K  ++  A+++ ++ +  G++P  V+
Sbjct: 314 NGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 373

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C  G +E AFS   +M    + PD +TYN L++G C+  ++  A+ LL +M+
Sbjct: 374 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 433

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
             G+ P   +FN                            P  ++Y +++   CKN +  
Sbjct: 434 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 493

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG 306
            A  +L +M  K + P+   Y ++I+ 
Sbjct: 494 EAVAILDDMFHKDVLPNAQVYNAIIDA 520



 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 167/311 (53%), Gaps = 7/311 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV    YT    ++G+CK+G++  A  +L+ +   GLVPT V YNTLI+GYC  G LE A
Sbjct: 331 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 390

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           FS   +M  + I P   TYN LI+ L    ++  A D+L EM + G+ P   T+N LI+ 
Sbjct: 391 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 450

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y R G  +K F +  EM   G++P +++Y S++    K  ++ EA  + ++   K +LP+
Sbjct: 451 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 510

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             ++NA+ID +  +G  ++AF L+++M    + P  VTYN L+ G C Q ++ EA  +++
Sbjct: 511 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 570

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +    + PD +S       YN LI   C     D A +L + M   GI     TY  LI
Sbjct: 571 SLSNHRLIPDAVS-------YNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 623

Query: 305 EGIASVDKAAE 315
            G+    +  E
Sbjct: 624 SGLGGAGRLIE 634



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P++ TY   +SG+C+ GR+ E S +L++M    +VP   TY+ L DG    G+
Sbjct: 257 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGD 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   S   + +K G+     T ++L++ L  + K+  A+++L+ +   G+VP  + YN 
Sbjct: 317 SKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNT 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G  + AFS   +M  + I+P  +TY +LI  L K  R+  A  L       G
Sbjct: 377 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  FN LID +   G +E+ F +L EM    + P+ V+Y ++++  C+ GK+ EA 
Sbjct: 437 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 496

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LD M  + + P+   +N                            P+ +TYN LI+GL
Sbjct: 497 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 556

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
           C   +   AEE++  + +  + PD  +Y +LI       ++DKA
Sbjct: 557 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 600



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 158/297 (53%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+CK  R+  A  +L +M++NG+ PT  T+NTLID Y   G 
Sbjct: 397 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 456

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F    EM + G+ P   +Y  +++      K+ EA  +L +M  K ++P++  YN 
Sbjct: 457 LEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 516

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G   +AF L ++M   GI P+++TY  LI  L  Q+++ EA+++  +     
Sbjct: 517 IIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR 576

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V +N LI   C  GNI++A  L + M +  +     TY+ L+ G    G++ E  
Sbjct: 577 LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEME 636

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            L  +M +  +        P+   +N +++   K      AE+L +EM+ K    DD
Sbjct: 637 YLYQKMMQNNVV-------PSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 686



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 147/312 (47%), Gaps = 41/312 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +PD++ +   V      G L EA  ML +M  +G  P                 
Sbjct: 151 LASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP----------------- 193

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                            P A +YN++I  +    +  +A ++  EM E+ ++P+ ITYN 
Sbjct: 194 -----------------PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNT 236

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G+ +  FSL D+M+  G++P  +TY  L+  L +  RM E   L +   ++ 
Sbjct: 237 MIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 296

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD   ++ L DG   NG+ +   SL  +  +  V   + T + L++G C+ GKV  A 
Sbjct: 297 MVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAE 356

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  +   G+ P       TR+ YN LI G C+  E + A     +M S+ I PD  TY
Sbjct: 357 EVLQSLVNAGLVP-------TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITY 409

Query: 301 FSLIEGIASVDK 312
            +LI G+   ++
Sbjct: 410 NALINGLCKAER 421


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 173/333 (51%), Gaps = 30/333 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P  Y+Y   + G+CK G L +A  ++  MK NG+ P AVTY  L+ GYC+ G 
Sbjct: 352 MTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGK 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S   EM++   +P A T N+L+H L    ++ EA+++L++M EKG   D++T NI
Sbjct: 412 VDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNI 471

Query: 121 LINGYCRCGNAKKAFSL-----------------------HDEMIHKGIQPTMLTYTSLI 157
           +++G C  G   KA  +                        D +I     P ++TY++L+
Sbjct: 472 IVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLL 531

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K  R  EA  LF   + + + PD V +N  I   C  G I  AF +LK+M++   H
Sbjct: 532 NGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCH 591

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
               TYN+L+ G   + ++ E   L+D+MK +GI P+         TYN  IQ LC+ ++
Sbjct: 592 KSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNIC-------TYNTAIQYLCEGEK 644

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            + A  LL EM+ K I P+  ++  LIE    V
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKV 677



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 168/322 (52%), Gaps = 14/322 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +P+ +T+G  V G CK G  ++   +L  M+  G++P  V YNT++  +C +G 
Sbjct: 173 MPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGR 232

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV----PDSI 116
            + +    ++M ++G++P   T+N  I  L  E K+++A  +  +M     +    P+SI
Sbjct: 233 NDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSI 292

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN+++ G+C+ G  + A +L + +       ++ +Y   +  L +  + IEA+ + +  
Sbjct: 293 TYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQM 352

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             KG+ P I  +N L+DG C  G +  A +++  M R  V PD VTY  L+HG C  GKV
Sbjct: 353 TDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKV 412

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + A+ LL +M R    P+         T N L+  L K      AEELLR+M  KG   D
Sbjct: 413 DAAKSLLQEMMRNNCLPN-------AYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLD 465

Query: 297 DNTYFSLIEGIAS---VDKAAE 315
             T   +++G+     +DKA E
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIE 487



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 172/373 (46%), Gaps = 75/373 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV----PTAVTYNTLIDGYC 56
           M+  G+ PD  T+ S +S +CKEG++ +ASR+   M+ +  +    P ++TYN ++ G+C
Sbjct: 243 MREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFC 302

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI----- 111
             G LE A +  + + +   + +  +YN+ +  L+   K +EA+ +LK+M +KGI     
Sbjct: 303 KVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIY 362

Query: 112 ------------------------------VPDSITYNILINGYCRCGNAKKAFSLHDEM 141
                                          PD++TY  L++GYC  G    A SL  EM
Sbjct: 363 SYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEM 422

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +     P   T   L+  L K  R+ EA++L      KG   D V  N ++DG C +G +
Sbjct: 423 MRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGEL 482

Query: 202 ERAFSLLKEMDRMKVH--------------------------PDEVTYNTLMHGRCRQGK 235
           ++A  ++K    M+VH                          PD +TY+TL++G C+ G+
Sbjct: 483 DKAIEIVK---GMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR 539

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
             EA+ L  +M    ++PD ++       YN  I   CK  +   A  +L++M  KG   
Sbjct: 540 FAEAKNLFAEMMGEKLQPDSVA-------YNIFIHHFCKQGKISSAFRVLKDMEKKGCHK 592

Query: 296 DDNTYFSLIEGIA 308
              TY SLI G+ 
Sbjct: 593 SLETYNSLILGLG 605



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 13/316 (4%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P  Y Y   +    KE R+E  S + + M   G+ P   T+N LI   C+   ++ A  
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             DEM ++G  P   T+ +L+          +  ++L  M   G++P+ + YN +++ +C
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFC 228

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML---- 182
           R G    +  + ++M  +G+ P ++T+ S I  L K+ ++++A ++F +      L    
Sbjct: 229 REGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+ + +N ++ G C  G +E A +L + +          +YN  + G  R GK  EA  +
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETV 348

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L QM  +GI        P+  +YN L+ GLCK      A+ ++  M   G+ PD  TY  
Sbjct: 349 LKQMTDKGI-------GPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGC 401

Query: 303 LIEGIASVDK--AAES 316
           L+ G  SV K  AA+S
Sbjct: 402 LLHGYCSVGKVDAAKS 417



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 165/410 (40%), Gaps = 99/410 (24%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------- 45
           MK  GV PD+ TYG  + G C  G+++ A  +L++M  N  +P A               
Sbjct: 387 MKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGR 446

Query: 46  --------------------VTYNTLIDGYCNKGNLEMAFSF------------------ 67
                               VT N ++DG C  G L+ A                     
Sbjct: 447 ISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNS 506

Query: 68  -----RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                 D +++   +P   TY+ L++ L    +  EA ++  EM  + + PDS+ YNI I
Sbjct: 507 YIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFI 566

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           + +C+ G    AF +  +M  KG   ++ TY SLI  L  +N++ E   L +    KG+ 
Sbjct: 567 HHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGIS 626

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR---------- 232
           P+I  +N  I   C    +E A +LL EM +  + P+  ++  L+   C+          
Sbjct: 627 PNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEV 686

Query: 233 ------------------------QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
                                    G++ +A  LL+ +  RG       F      Y  L
Sbjct: 687 FETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRG-------FELGTFLYKDL 739

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           ++ LCK  E ++A  +L +M+ +G   D      +I+G+  +    E+++
Sbjct: 740 VESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANS 789



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 139/293 (47%), Gaps = 21/293 (7%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TY + ++G+CK GR  EA  +  +M    L P +V YN  I  +C +G +  AF  
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M K+G   +  TYN LI  L ++ ++ E   ++ EM EKGI P+  TYN  I   C 
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-----KGML 182
               + A +L DEM+ K I P + ++  LI    K      A ++FE  ++     +G+ 
Sbjct: 642 GEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLY 701

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
              +MFN L+      G + +A  LL+ +           Y  L+   C++ ++E A  +
Sbjct: 702 S--LMFNELL----AAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGI 755

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCK---NQEGDLAEELLREMVSKG 292
           L +M  RG       F+P  L    +I GL K    +E +   + + EM S G
Sbjct: 756 LHKMIDRG-----YGFDPAALM--PVIDGLGKMGNKKEANSFADKMMEMASVG 801



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           +P++  Y  L+    K+ R+     L+++ +  G+ P    FN LI   C +  ++ A  
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L  EM      P+E T+  L+ G C+ G  ++   LL+ M+  G+ P+       ++ YN
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPN-------KVIYN 221

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            ++   C+    D +E+++ +M  +G+ PD  T+ S I  +    K  ++S
Sbjct: 222 TIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDAS 272


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 161/304 (52%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD +T+ + + G+CK+G +  A  M+  M  NG  P  +TY TL+DG+C K  
Sbjct: 371 MIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQ 430

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    +EM  +G       YN+L+  L    K+ +A DML EM +KG  PD  T+N 
Sbjct: 431 LEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNT 490

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+    + A +L+ +M+  G+    +TY +LI    +   + EA +L  + L +G
Sbjct: 491 LIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRG 550

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  G  E+A  L  EM R  + P  ++ N L++G CR GKV  A 
Sbjct: 551 CPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNAL 610

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M  RG+ PD +       TYN+LI GLCK      A  L  ++ ++GI PD  TY
Sbjct: 611 ELLRDMIHRGLAPDVV-------TYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITY 663

Query: 301 FSLI 304
            +LI
Sbjct: 664 NTLI 667



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 177/347 (51%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+  TYG  ++G+C+ G+++EA  +L ++      P  V +  LI+GY   G 
Sbjct: 304 MLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP----TPNDVHFTILINGYVKSGR 359

Query: 61  LEMAFSF-RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A +F  D+M+K G  P   T+N LIH L  +  M  A DM+ +M   G  P+ ITY 
Sbjct: 360 LDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYT 419

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++G+C+    ++A  + +EM  KG +  ++ Y  L+  L K  ++ +A  +      K
Sbjct: 420 TLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDK 479

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  FN LI G C     E A +L ++M    V  + VTYNTL+H   R G ++EA
Sbjct: 480 GCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEA 539

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
            +L++ M  RG   D I++N                            P+ ++ N LI G
Sbjct: 540 LKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLING 599

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LC+  +   A ELLR+M+ +G+ PD  TY SLI G+  +    E+ N
Sbjct: 600 LCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFN 646



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 164/317 (51%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GV P  YT+G  +  +C    ++ A  +L  M ++G VP +V Y TLI     +  
Sbjct: 199 MLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDR 258

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM   G +P   T+N +I+ L    ++ E   ++  M  +G  P+ ITY +
Sbjct: 259 VNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGV 318

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ-LFENFLAK 179
           L+NG CR G   +A      +++K   P  + +T LI    K  R+ EA+  L++  +  
Sbjct: 319 LMNGLCRVGKVDEA----QVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKN 374

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD+  FN LI G C  G +  A  ++ +M      P+ +TY TL+ G C++ ++EEA
Sbjct: 375 GCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEA 434

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L++M  +G       F    + YN L++ LCKN +   A ++L EM  KG  PD  T
Sbjct: 435 GYVLNEMSAKG-------FELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFT 487

Query: 300 YFSLIEGIASVDKAAES 316
           + +LI G+  VD+  ++
Sbjct: 488 FNTLIFGLCKVDRKEDA 504



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 147/274 (53%), Gaps = 7/274 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G + +   Y   +  +CK G++ +A  ML +M + G  P   T+NTLI G C    
Sbjct: 441 MSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDR 500

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A +   +M+  G++    TYN LIH  L    + EA  ++ +M  +G   D ITYN 
Sbjct: 501 KEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNG 560

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+ G  +KA  L DEM+ K + P+ ++   LI  L +  ++  A +L  + + +G
Sbjct: 561 LIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRG 620

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N+LI+G C  GNI  AF+L  ++    + PD +TYNTL+   CR G  ++A 
Sbjct: 621 LAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAY 680

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            LL     RG++    +F P  +T+  L+    K
Sbjct: 681 LLL----LRGVEN---AFIPNDVTWYILVSNFIK 707



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 125/271 (46%), Gaps = 39/271 (14%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           PT  +YN+++  L+       A ++  EM  KG++P   T+ +++   C       A SL
Sbjct: 171 PTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
             +M   G  P  + Y +LI  LSK++R+ EA +L E     G LPD+  FN +I G C 
Sbjct: 231 LRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCR 290

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL-------------- 243
              I     L+  M      P+++TY  LM+G CR GKV+EA+ LL              
Sbjct: 291 LNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTIL 350

Query: 244 ------------------DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
                             D+M + G +PD         T+N LI GLCK      A +++
Sbjct: 351 INGYVKSGRLDEANAFLYDKMIKNGCRPD-------VFTFNTLIHGLCKKGLMGSAVDMV 403

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +M + G TP+  TY +L++G    ++  E+
Sbjct: 404 NDMSANGCTPNLITYTTLLDGFCKKNQLEEA 434



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY S ++G+CK G + EA  +  +++  G+ P A+TYNTLI  +C  G 
Sbjct: 616 MIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGM 675

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
            + A+      V+   +P   T+ +L+   + E
Sbjct: 676 FDDAYLLLLRGVENAFIPNDVTWYILVSNFIKE 708



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++ G+QPD+ TY + +   C+ G  ++A  +L +  EN  +P  VT+  L+  +  +  
Sbjct: 651 LQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKEIG 710

Query: 61  LEMAFSF 67
            E   SF
Sbjct: 711 KENGISF 717


>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1202

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 186/318 (58%), Gaps = 11/318 (3%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+  G  P+  +YG+ ++ +CK  +L EA  +   M++ G+ P    YN LIDG C+KG 
Sbjct: 858  MEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGK 917

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +E AF F +EM K+GI     TYN LI  L M  K+ EA+DML E+  KG+ PD  TYN 
Sbjct: 918  IEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNS 977

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+GY   GN ++  +L++EM   GI+PT+ TY  LI + +K+   IE  +  + F    
Sbjct: 978  LISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTKEG--IELTK--KIFGEMS 1033

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PD++++N ++  +  +G++++AF+L K+M    +  D+ TYN+L+ G+ + GK+ E R
Sbjct: 1034 LQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVR 1093

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L+D+MK R ++P+         TY+ +++G C+ ++   A    REM  KG+  D    
Sbjct: 1094 SLIDEMKAREMEPEAD-------TYDIIVKGHCEMKDYMGAYVWYREMQEKGLLLDVCIG 1146

Query: 301  FSLIEGIASVDKAAESSN 318
              L+ G+    ++ E+ N
Sbjct: 1147 DELVSGLKEEWRSKEAEN 1164



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 177/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   + P  + Y   + G+CK  ++++A ++ ++M    L+P+ +TYNTLIDGYC  GN
Sbjct: 578 MKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGN 637

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E +F  R+ M    I P+  T+N L+  L     + +A+++L EM ++G VPD+ T++I
Sbjct: 638 PEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSI 697

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +GY     A  A  +++  +  G++    T + L+  L K+ ++ +A+++    +AKG
Sbjct: 698 LFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKG 757

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V++N +IDG+   G++  A   +  M++  + PD + YN L+   C  G +E A 
Sbjct: 758 LVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAE 817

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + +++MK +G+       +P+  TYN LI G  +  E D   +LL+EM   G  P+  +Y
Sbjct: 818 QEVNKMKLKGV-------SPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSY 870

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +    K  E+
Sbjct: 871 GTLINCLCKGSKLLEA 886



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 166/302 (54%), Gaps = 11/302 (3%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G++ ++YT    ++ +CKEG++E+A  +L +    GLVP  V YNT+IDGY  KG+L  A
Sbjct: 722  GLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGA 781

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                D M KQG+ P    YN LI        M  A+  + +M  KG+ P   TYNILI G
Sbjct: 782  RMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGG 841

Query: 125  YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            Y R     K F L  EM   G  P +++Y +LI  L K ++++EA  +  +   +G+ P+
Sbjct: 842  YGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPN 901

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + ++N LIDG C+ G IE AF   +EM +  +  + VTYNTL+ G    GK+ EA  +L 
Sbjct: 902  VRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLL 961

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQG--LCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++ R+G+KPD         TYN+LI G     N +  +A  L  EM + GI P   TY  
Sbjct: 962  EISRKGLKPD-------VFTYNSLISGYRFAGNVQRCIA--LYEEMKTSGIKPTLKTYHL 1012

Query: 303  LI 304
            LI
Sbjct: 1013 LI 1014



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 162/315 (51%), Gaps = 11/315 (3%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+ +G++PD   Y   +   C+ G +E A + + +MK  G+ P+  TYN LI GY  K  
Sbjct: 788  MEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYE 847

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +  F    EM   G MP   +Y  LI+ L    K++EA  + ++M ++G+ P+   YN+
Sbjct: 848  FDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNM 907

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+G C  G  + AF   +EM  KGI+  ++TY +LI  LS   ++ EA+ +      KG
Sbjct: 908  LIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKG 967

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PD+  +N+LI G+   GN++R  +L +EM    + P   TY+ L+   C +  +E  +
Sbjct: 968  LKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLI-SLCTKEGIELTK 1026

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++  +M          S  P  L YN ++     + + D A  L ++M+ K I  D  TY
Sbjct: 1027 KIFGEM----------SLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTY 1076

Query: 301  FSLIEGIASVDKAAE 315
             SLI G   V K  E
Sbjct: 1077 NSLILGQLKVGKLCE 1091



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+  ++P   T+ + + G+ K G +E+A  +L +MK+ G VP A T++ L DGY +   
Sbjct: 648 MKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDK 707

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +  V  G+   A T ++L++ L  E ++ +A+++L     KG+VP+ + YN 
Sbjct: 708 ADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNT 767

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GY R G+   A    D M  +G++P  L Y  LI    +   M  A+Q       KG
Sbjct: 768 MIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKG 827

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N LI G+      ++ F LLKEM+     P+ V+Y TL++  C+  K+ EA+
Sbjct: 828 VSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQ 887

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M+ RG+ P+       R+ YN LI G C   + + A     EM  KGI  +  TY
Sbjct: 888 IVKRDMEDRGVSPN------VRI-YNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTY 940

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI+G++   K AE+ +
Sbjct: 941 NTLIDGLSMNGKLAEAED 958



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 162/342 (47%), Gaps = 44/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++ G+ P S +    +  + K  +      +   + E+   P+   Y   I       +
Sbjct: 508 LRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSD 567

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       + M    I PT   YN+LI  L   R+M +A+ +  EM  + ++P  ITYN 
Sbjct: 568 VGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNT 627

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN +K+F + + M    I+P+++T+ +L+  L K   + +A+ +      +G
Sbjct: 628 LIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQG 687

Query: 181 MLPDIVMFNALIDGH-----------------------------------CTNGNIERAF 205
            +PD   F+ L DG+                                   C  G IE+A 
Sbjct: 688 FVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAE 747

Query: 206 SLL-KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +L +EM +  V P+EV YNT++ G  R+G +  AR  +D M+++G+KPDH       L 
Sbjct: 748 EILGREMAKGLV-PNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDH-------LA 799

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           YN LI+  C+  + + AE+ + +M  KG++P   TY  LI G
Sbjct: 800 YNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGG 841



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 126/251 (50%), Gaps = 4/251 (1%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +G++ +  TY + + G+   G+L EA  ML ++   GL P   TYN+LI GY   GN
Sbjct: 928  MFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGN 987

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++   +  +EM   GI PT  TY+LLI   L  ++ +E     K  GE  + PD + YN 
Sbjct: 988  VQRCIALYEEMKTSGIKPTLKTYHLLIS--LCTKEGIELTK--KIFGEMSLQPDLLVYNG 1043

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +++ Y   G+  KAF+L  +MI K I     TY SLI    K  ++ E   L +   A+ 
Sbjct: 1044 VLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKARE 1103

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            M P+   ++ ++ GHC   +   A+   +EM    +  D    + L+ G   + + +EA 
Sbjct: 1104 MEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLLLDVCIGDELVSGLKEEWRSKEAE 1163

Query: 241  RLLDQMKRRGI 251
             ++ +M  R +
Sbjct: 1164 NVISEMNGRKL 1174



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 8/230 (3%)

Query: 85  LLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           LL+  LL E KM+ EA D+   +  +GI P S +  +L++   +    +   ++   ++ 
Sbjct: 486 LLLSVLLNESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 545

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
              +P+   Y   I    K + + +  +LF       + P + ++N LIDG C    ++ 
Sbjct: 546 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKD 605

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  L  EM   ++ P  +TYNTL+ G C+ G  E++ ++ ++MK   I+P  I       
Sbjct: 606 AEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLI------- 658

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           T+N L++GL K    + AE +L EM  +G  PD  T+  L +G +S DKA
Sbjct: 659 TFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKA 708


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 172/303 (56%), Gaps = 8/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  T+ + ++G+C+EGR+ EA  +L++M E+GL P  +TY T++DG C  G+   A +
Sbjct: 175 RPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALN 234

Query: 67  FRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +M +   I P    Y+ +I  L  + +  +A ++  EM EKGI PD  TYN +I+G+
Sbjct: 235 LLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGF 294

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   +A  L  EM+ + I P ++TY++LI    K+ +  EA++L++  L +G++P+ 
Sbjct: 295 CSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNT 354

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N++IDG C    ++ A  +   M      PD  T+NTL+ G C   ++++   LL +
Sbjct: 355 ITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHE 414

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M   G+  D         TYN LI G C   + + A +L ++M+S G+ PD  T  +L++
Sbjct: 415 MTETGLVADTT-------TYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLD 467

Query: 306 GIA 308
           G+ 
Sbjct: 468 GLC 470



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 172/357 (48%), Gaps = 40/357 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M   G+QP+  TYG+ V GMCK G    A  +L +M+E + + P  V Y+ +IDG    G
Sbjct: 204 MVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDG 263

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A +   EM ++GI P   TYN +I       +  EA  +L+EM E+ I P+ +TY+
Sbjct: 264 RHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYS 323

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN Y +     +A  L+DEM+ +GI P  +TY S+I    KQNR+  A+ +F     K
Sbjct: 324 ALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATK 383

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD+  FN LIDG+C    I+    LL EM    +  D  TYNTL+HG C  G +  A
Sbjct: 384 GCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAA 443

Query: 240 RRLLDQMKRRGIKPDHISFN---------------------------------------P 260
             L  QM   G+ PD ++ N                                       P
Sbjct: 444 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEP 503

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
              TYN LI GL    +   AEEL +EM  +GI P+  TY S+I G+    +  E++
Sbjct: 504 DVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEAT 560



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 157/317 (49%), Gaps = 18/317 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD +TY   + G C  GR  EA R+L++M E  + P  VTY+ LI+ Y  +  
Sbjct: 275 MQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERK 334

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM+ +GI+P   TYN +I     + ++  A+ M   M  KG  PD  T+N 
Sbjct: 335 FFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNT 394

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC          L  EM   G+     TY +LI        +  A  L +  ++ G
Sbjct: 395 LIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG 454

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHG 229
           + PDIV  N L+DG C NG ++ A  + K M + K           V PD  TYN L+ G
Sbjct: 455 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISG 514

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
              +GK  EA  L  +M  RGI P+ I       TY+++I GLCK    D A ++   M 
Sbjct: 515 LINEGKFLEAEELYKEMPHRGIVPNTI-------TYSSMINGLCKQSRLDEATQMFDSMG 567

Query: 290 SKGITPDDNTYFSLIEG 306
           SK  +PD  T+ +L+ G
Sbjct: 568 SKSFSPDVVTFNTLVSG 584



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 164/320 (51%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ TY S + G CK+ RL+ A  M   M   G  P   T+NTLIDGYC    
Sbjct: 345 MLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKR 404

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM + G++   +TYN LIH   +   +  A D+ ++M   G+ PD +T N 
Sbjct: 405 IDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 464

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P + TY  LI  L  + + +EA
Sbjct: 465 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEA 524

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L++    +G++P+ + ++++I+G C    ++ A  +   M      PD VT+NTL+ G
Sbjct: 525 EELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSG 584

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  D I       TY  LI G  K    + A ++ +EM+
Sbjct: 585 YCKAGRVDDGLELFCEMGRRGIVADAI-------TYITLIHGFRKVGNINGALDIFQEMI 637

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           S G+ PD  T  S++  + S
Sbjct: 638 SSGVYPDTITIRSMLTVLWS 657



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 165/309 (53%), Gaps = 16/309 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + +  D Y++   +   C   +L  A     ++ + G  P  VT++TL+ G C +  
Sbjct: 103 MERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDR 162

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M +    P   T+  L++ L  E ++VEA  +L  M E G+ P+ ITY  
Sbjct: 163 VSEALDLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 218

Query: 121 LINGYCRCGNAKKAFSL---HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++G C+ G+   A +L    +EM H  I+P ++ Y+++I  L K  R  +A  L+    
Sbjct: 219 IVDGMCKIGDTVSALNLLRKMEEMSH--IKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQ 276

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N +IDG C++G    A  LL+EM   K++P+ VTY+ L++   ++ K  
Sbjct: 277 EKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFF 336

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  L D+M  RGI P+ I       TYN++I G CK    D AE +   M +KG +PD 
Sbjct: 337 EAEELYDEMLPRGIIPNTI-------TYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDV 389

Query: 298 NTYFSLIEG 306
            T+ +LI+G
Sbjct: 390 FTFNTLIDG 398



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 46/293 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +T+ + + G C   R+++ + +L +M E GLV    TYNTLI G+C  G+
Sbjct: 380 MATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGD 439

Query: 61  LEMAFSFRDEMVKQGIMPT----------------------------------------- 79
           L  A     +M+  G+ P                                          
Sbjct: 440 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFN 499

Query: 80  -----ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
                  TYN+LI  L+ E K +EA+++ KEM  +GIVP++ITY+ +ING C+     +A
Sbjct: 500 GVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEA 559

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
             + D M  K   P ++T+ +L+    K  R+ +  +LF     +G++ D + +  LI G
Sbjct: 560 TQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHG 619

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
               GNI  A  + +EM    V+PD +T  +++     + +++ A  +L+ ++
Sbjct: 620 FRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 130/266 (48%), Gaps = 10/266 (3%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           L  G+     LE A     +MV+   +P+   +N L+  ++   +      + ++M  K 
Sbjct: 48  LRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQ 107

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           I  D  ++NILI  +C C     A S   ++   G QP ++T+++L+  L  ++R+ EA 
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            LF         P++V F  L++G C  G +  A +LL  M    + P+++TY T++ G 
Sbjct: 168 DLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 223

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C+ G    A  LL +M+       HI   P  + Y+A+I GL K+     A  L  EM  
Sbjct: 224 CKIGDTVSALNLLRKMEEMS----HI--KPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQE 277

Query: 291 KGITPDDNTYFSLIEGIASVDKAAES 316
           KGI PD  TY  +I+G  S  + +E+
Sbjct: 278 KGIFPDLFTYNCMIDGFCSSGRWSEA 303



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 14/214 (6%)

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           E GE G   +S+    L +G+      + A  L  +M+     P+++ +  L+ V+ +  
Sbjct: 35  ESGEAGFRGESLK---LRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRME 91

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           R      L++    K +  D+  FN LI   C+   +  A S   ++ ++   PD VT++
Sbjct: 92  RPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFS 151

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           TL+HG C + +V EA  L  QM R           P  +T+  L+ GLC+      A  L
Sbjct: 152 TLLHGLCVEDRVSEALDLFHQMCR-----------PNVVTFTTLMNGLCREGRVVEAVAL 200

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           L  MV  G+ P+  TY ++++G+  +     + N
Sbjct: 201 LDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALN 234


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 170/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++    TY   +S +CK GR++EA  +L +M+  GL P  +TY+ LI G C +G 
Sbjct: 401 MLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGA 460

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM  + I P +   + +I  L  +  + EA      + +  +  + I YNI
Sbjct: 461 VEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNI 520

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GY + GN  +A   + ++I KGI PT++T+ SLI+   K+ ++ EA +L +     G
Sbjct: 521 MIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHG 580

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P  V +  L++G+C  G++   F +L EM+   + P ++TY  ++ G C++G++ E+ 
Sbjct: 581 LVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESV 640

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M  RG+ PD I       TYN +IQ  CK  +   A +L  +M+   + P   TY
Sbjct: 641 QLLKYMYARGLFPDQI-------TYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTY 693

Query: 301 FSLIEGIA 308
             LI G+ 
Sbjct: 694 NVLINGLC 701



 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 186/338 (55%), Gaps = 32/338 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GV+PD  TY    +G    G +  A +++++M  NGL P  VTY  LI G+C  GN
Sbjct: 331 MENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGN 390

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E +F  +++M+ QG+  +  TY +L+  L    ++ EA  +L EM   G+ PD +TY++
Sbjct: 391 IEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSV 450

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  ++A  L++EM  K I P     +++I  L ++  + EA   F++     
Sbjct: 451 LIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSD 510

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +I+++N +IDG+   GNI  A    K++    + P  VT+N+L++G C++GK+ EA 
Sbjct: 511 VAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAV 570

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +LLD +K  G+ P  +++                             PT++TY  +++GL
Sbjct: 571 KLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGL 630

Query: 273 CKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  EG L E  +LL+ M ++G+ PD  TY ++I+   
Sbjct: 631 CK--EGRLHESVQLLKYMYARGLFPDQITYNTVIQSFC 666



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 181/346 (52%), Gaps = 32/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+ GV  + YT    + G+C++ RL++A   L +       P+ V++N L+ G+C  G+
Sbjct: 226 IKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGS 285

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A SF   M+K G++P   +YN+L+H L +   M EA +   +M   G+ PD +TYNI
Sbjct: 286 VDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI 345

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L NG+   G    A+ +   M+  G+ P ++TYT LI    +   + E+ +L E  L++G
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   IV +  L+   C +G I+ A  LL EM+ + + PD +TY+ L+HG C++G VEEA 
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAI 465

Query: 241 RLLDQMKRRGIKPD--------------------HISFNPTR--------LTYNALIQGL 272
            L ++M  + I P+                     + F+           + YN +I G 
Sbjct: 466 ELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGY 525

Query: 273 CKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K   G++ E +   ++++ KGI+P   T+ SLI G     K AE+
Sbjct: 526 AK--LGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEA 569



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ + P+S+   + +SG+ ++G + EA    + + ++ +    + YN +IDGY   GN
Sbjct: 471 MCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGN 530

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +++++GI PT  T+N LI+    + K+ EA  +L  +   G+VP S+TY  
Sbjct: 531 IGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTT 590

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC  G+    F +  EM  K I+PT +TYT ++  L K+ R+ E+ QL +   A+G
Sbjct: 591 LMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARG 650

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N +I   C   ++++AF L  +M +  + P  VTYN L++G C  G +++A 
Sbjct: 651 LFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDAD 710

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL  ++ + I+        T++ Y  +I+  C   +   A     +MV +G       Y
Sbjct: 711 RLLVTLQDQSIR-------LTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDY 763

Query: 301 FSLI 304
            ++I
Sbjct: 764 SAVI 767



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 152/325 (46%), Gaps = 48/325 (14%)

Query: 21  CKEGRLE---EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM 77
           C   R E   +A  +L +MK   L  +  TYN+L+    N  + ++ +   +E+   G+ 
Sbjct: 176 CAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLY---NLRHTDIMWDVYNEIKASGVP 232

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
               T  +LI  L  + ++ +A   L+E G +   P  +++N L++G+C+ G+   A S 
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSF 292

Query: 138 HDEMIHKGIQPTMLTYTSLI--------------FVLSKQNRMIEADQLFENFLAKG--- 180
              MI  G+ P + +Y  L+              F    +N  +E D +  N LA G   
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRI 352

Query: 181 -------------ML-----PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
                        ML     PD+V +  LI GHC  GNIE +F L ++M    +    VT
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVT 412

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y  L+   C+ G+++EA  LL +M+  G+KPD        LTY+ LI GLCK    + A 
Sbjct: 413 YTVLLSSLCKSGRIDEAVILLHEMEVIGLKPD-------LLTYSVLIHGLCKRGAVEEAI 465

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI 307
           EL  EM SK I P+     ++I G+
Sbjct: 466 ELYEEMCSKRIYPNSFVCSAIISGL 490



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 110/195 (56%), Gaps = 4/195 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++ ++P   TY   V G+CKEGRL E+ ++L+ M   GL P  +TYNT+I  +C   +
Sbjct: 611 MEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHD 670

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF   ++M++  + P+  TYN+LI+ L +   + +AD +L  + ++ I    + Y  
Sbjct: 671 LQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTT 730

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C  G+ + A     +M+ +G + ++  Y+++I  L K+N + +A   F   L  G
Sbjct: 731 IIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHG 790

Query: 181 MLPD----IVMFNAL 191
           + PD    +VM NA 
Sbjct: 791 IPPDQDICLVMLNAF 805



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 35/285 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ P   T+ S + G CK+G+L EA ++L+ +K +GLVPT+VTY TL++GYC +G++  
Sbjct: 544 KGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHS 603

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN---- 119
            F    EM  + I PT  TY +++  L  E ++ E+  +LK M  +G+ PD ITYN    
Sbjct: 604 MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQ 663

Query: 120 -------------------------------ILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                          +LING C  GN K A  L   +  + I+ 
Sbjct: 664 SFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 723

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T + YT++I     +  +  A   F   + +G    I  ++A+I+  C    I  A    
Sbjct: 724 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFF 783

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             M    + PD+     +++   R G       +   M + G+ P
Sbjct: 784 CMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 39/235 (16%)

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF--------------- 158
           +++ +++L   Y R      A  +  +M    +Q ++ TY SL++               
Sbjct: 167 NNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEI 226

Query: 159 -----------------VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
                             L +Q+R+ +A         +   P +V FNAL+ G C  G++
Sbjct: 227 KASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSV 286

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A S    M +  + PD  +YN L+HG C  G +EEA    + M+  G++PD +++N  
Sbjct: 287 DVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI- 345

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            L     I GL        A ++++ M+  G+ PD  TY  LI G   +    ES
Sbjct: 346 -LANGFRILGLISG-----AWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEES 394


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G+ PD  T    VSG+CK+G +EEA  +L+ MK  G VP  +TYN++I   C  G 
Sbjct: 195 MKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGK 254

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M      P   T+N L+        +  A ++L+EM  + I+PD ITY I
Sbjct: 255 VVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTI 311

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG CR G  + AF L +E++ +G  P ++ YTSL+  L K   + EA +L +    +G
Sbjct: 312 LVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRG 371

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               +VM+++L+ G+C  GN+ +A  +L EM  + + P   TYN ++ G  + G + +A 
Sbjct: 372 CRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAV 431

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+  +  RG  PD +       TYN LI GLCK      A +L  EM S+G  P+D T 
Sbjct: 432 SLISDLVARGYVPDVV-------TYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTL 484

Query: 301 FSLIEGIASVDKAAES 316
            S++ G+  V +  ++
Sbjct: 485 GSVVFGLCRVGRVDDA 500



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 182/355 (51%), Gaps = 47/355 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLID----- 53
           M+S  V+P+  TY + +SG+CK G LE+A  +LE+M   G    P  VTYNTLI+     
Sbjct: 123 MESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRA 182

Query: 54  ------------------------------GYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
                                         G C  G++E A    D M   G +P   TY
Sbjct: 183 SRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITY 242

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N +IH L +  K+VEA ++LK M      PD +T+N L++G+C+ G   +A  + +EM  
Sbjct: 243 NSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCR 299

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           + I P ++TYT L+  L +  ++  A  L E  + +G +PD++ + +L+DG C +G IE 
Sbjct: 300 ENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEE 359

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  L+KEM         V Y++L+ G CR G V +AR +L +M         I+  P   
Sbjct: 360 AHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMV-------SINMVPPLF 412

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           TYN ++ GL K+     A  L+ ++V++G  PD  TY +LI+G+   ++  E+ +
Sbjct: 413 TYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACD 467



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+    PD  T+ + + G CK G L  A  +LE+M    ++P  +TY  L++G C  G 
Sbjct: 262 LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQ 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++AF   +E+V+QG +P    Y  L+  L    ++ EA  ++KEM  +G     + Y+ 
Sbjct: 322 VQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSS 381

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYCR GN  KA  +  EM+   + P + TY  ++  L K   + +A  L  + +A+G
Sbjct: 382 LVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARG 441

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +N LIDG C    +  A  L  EM      P++VT  +++ G CR G+V++A 
Sbjct: 442 YVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAW 501

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M R+          P  + Y +LI GLCK+   D A  +L  M  +G+  DD  Y
Sbjct: 502 SLVVEMSRK-------RHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAY 554

Query: 301 FSLIEGIASVDKAAES 316
             LI  ++   + AE+
Sbjct: 555 RKLIVSMSHGGRVAEA 570



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 160/333 (48%), Gaps = 33/333 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G + D ++Y   +  + K G      ++ + +  +G  P  VT+  LI G C  G    A
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRA 81

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F   + +  + P    +N+LIH L  +    +A  + + M    + P+ +TYN +I+G
Sbjct: 82  LEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISG 141

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQ--PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            C+ GN +KA  L +EMI KG +  P ++TY +LI    + +R+ EA    E   A G+ 
Sbjct: 142 LCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGIN 201

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD++  N L+ G C +G++E A  +L  M      PD +TYN+++H  C  GKV EA  +
Sbjct: 202 PDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEI 261

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
           L  M      PD ++FN                            P  +TY  L+ GLC+
Sbjct: 262 LKTMS---CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCR 318

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             +  +A  LL E+V +G  PD   Y SL++G+
Sbjct: 319 VGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGL 351



 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 135/251 (53%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  PD   Y S V G+CK G +EEA +++++M   G     V Y++L+ GYC  GN+  
Sbjct: 335 QGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHK 394

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     EMV   ++P   TYN+++  L+ +  + +A  ++ ++  +G VPD +TYN LI+
Sbjct: 395 AREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLID 454

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+    ++A  L DEM  +G  P  +T  S++F L +  R+ +A  L      K   P
Sbjct: 455 GLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAP 514

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++V++ +LIDG C +  ++ A  +L  M    V  D+  Y  L+      G+V EA  + 
Sbjct: 515 NVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMY 574

Query: 244 DQMKRRGIKPD 254
           D+M  RG  PD
Sbjct: 575 DEMVARGFLPD 585



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 130/259 (50%), Gaps = 10/259 (3%)

Query: 62  EMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++A  F D   +Q G      +YN L+  L+          + K++   G  P+ +T+ I
Sbjct: 8   DLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKI 67

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+ G A +A      +    + P +  +  LI  L K     +A +LFEN  +  
Sbjct: 68  LIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSR 127

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM--KVHPDEVTYNTLMHGRCRQGKVEE 238
           + P+IV +N +I G C +GN+E+A  LL+EM R   K  PD VTYNTL++   R  ++ E
Sbjct: 128 VKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIRE 187

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A    ++MK  GI PD        LT N L+ G+CK+ + + A E+L  M   G  PD  
Sbjct: 188 ACAFREKMKAAGINPD-------VLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVI 240

Query: 299 TYFSLIEGIASVDKAAESS 317
           TY S+I  +    K  E++
Sbjct: 241 TYNSIIHALCVAGKVVEAA 259



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 109/226 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +     Y S VSG C+ G + +A  +L +M    +VP   TYN ++ G    G+
Sbjct: 367 MSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGS 426

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S   ++V +G +P   TYN LI  L    ++ EA D+  EM  +G  P+ +T   
Sbjct: 427 ISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGS 486

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G CR G    A+SL  EM  K   P ++ YTSLI  L K +RM +A  + +    +G
Sbjct: 487 VVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQG 546

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
           +  D   +  LI      G +  A ++  EM      PD  T  TL
Sbjct: 547 VALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 176/346 (50%), Gaps = 42/346 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV  +  TY   + G    G++EEA R+ E+M+E G+      Y ++I   C  GN
Sbjct: 286 MEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGN 345

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    DEM  +G++P+A TY  LIH +    +M  A  ++ EM  KGI  + + +N 
Sbjct: 346 VKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNT 405

Query: 121 LINGYCRCGNAKKAFSLH----------------------------DE-------MIHKG 145
           LI+GYC  G   +A  L                             DE       M+ +G
Sbjct: 406 LIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 465

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +++T+LI +  K+   +EA ++F     KG +P+I+ +N LIDG+   GN++ A 
Sbjct: 466 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 525

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  E++   + PD  T  +L+HG C  GKV+ A +L D+M +RG+ P+ +       TY
Sbjct: 526 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV-------TY 578

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            A+I GL K+   + A +L  EM   G+TPDD  Y SL+  + S +
Sbjct: 579 TAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSAE 624



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+   Y+    + G+CK G +E   ++++++   G+    VTYN  I+GY  + +L    
Sbjct: 221 VEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVA 280

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M K+G+     TY LLIH      K+ EA  + +EM EKGI  D   Y  +I+  
Sbjct: 281 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCN 340

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR GN K+A  L DEM  KG+ P+  TY +LI  + K  +M  A  L      KG+  + 
Sbjct: 341 CRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNP 400

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V+FN LIDG+C +G ++ A  L   M++  +  D   YN++  G C+  + +EA+ LL  
Sbjct: 401 VIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFS 460

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  RG+ P+ +SF         LI   CK      A+ + REM  KG  P+  TY  LI+
Sbjct: 461 MVERGVSPNTMSF-------TTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLID 513

Query: 306 G 306
           G
Sbjct: 514 G 514



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 19/270 (7%)

Query: 38  ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
           ++GL        +L+D  CN+     A  F+++            ++LL       +   
Sbjct: 125 DDGLRVPVTVIASLVDDACNESKCNRA-KFKEKF-----------FDLLFRVYADNKMFG 172

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA +  + M +KG   D  +  + +    R G           M++  ++ T+ + T ++
Sbjct: 173 EALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVL 232

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K+  +    +L +   AKG+  ++V +NA I+G+    ++     +L  M++  V 
Sbjct: 233 DGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVA 292

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
            + VTY  L+HG    GK+EEA+RL ++M+ +GI+ D          Y ++I   C++  
Sbjct: 293 CNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD-------VYVYTSIISCNCRSGN 345

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              A  L  EM  KG+ P  +TY +LI G+
Sbjct: 346 VKRALVLFDEMTDKGLIPSAHTYGALIHGV 375



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 153 YTSLIFVLSKQNRMI-EADQLFENFLAKGMLPD----IVMFNALIDGHCTNGNIERAFSL 207
           +  L+F +   N+M  EA + FE+   KG   D    +V   AL  G    G ++     
Sbjct: 157 FFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRG----GQVDSCLRF 212

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
            + M  + V     +   ++ G C++G VE  R+L+D++  +G+K + +       TYNA
Sbjct: 213 FRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVV-------TYNA 265

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            I+G  K  +     E+L  M  +G+  +  TY  LI G +++ K  E+
Sbjct: 266 FIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEA 314


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD YTY S +SG+CK G ++EA ++L QM E    P  VTYNT+I   C +  
Sbjct: 327 MLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQ 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      +  +GI+P   TYN LI  L + R    A ++ KEM  KG  PD  TYN+
Sbjct: 387 VEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNM 446

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G  ++A +L  EM   G    ++TY +LI    K  R+ EA+++F+    +G
Sbjct: 447 LIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQG 506

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V +N LIDG C +  +E A  L+ +M    + PD+ TYN+L+   C+ G +++A 
Sbjct: 507 VSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAA 566

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++  M   G +PD +       TY  LI GLCK    + A +LLR +  KGI    + Y
Sbjct: 567 DIVQTMASDGCEPDIV-------TYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAY 619

Query: 301 FSLIEGIASVDKAAES 316
             +I+ +    ++ E+
Sbjct: 620 NPVIQALFRRKRSKEA 635



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 182/318 (57%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD  T+ + + G  +EG L+ A R+ EQM E G V T VT N L++G+C +G 
Sbjct: 221 MEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGR 280

Query: 61  LEMAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +E A  F +EM +++G  P   T+N+L++ L     +  A +++  M  +G  PD  TYN
Sbjct: 281 IEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYN 340

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G C+ G   +A  + ++MI +   P  +TY ++I  L K+N++ EA +L      K
Sbjct: 341 SLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGK 400

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+LPD+  +N+LI G C + N   A  L KEM     HPDE TYN L+   C +GK++EA
Sbjct: 401 GILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEA 460

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL +M+  G   + I       TYN LI G CKN+    AEE+  +M  +G++ +  T
Sbjct: 461 LNLLKEMEVSGCARNVI-------TYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT 513

Query: 300 YFSLIEGIASVDKAAESS 317
           Y +LI+G+   ++  E+S
Sbjct: 514 YNTLIDGLCKSERVEEAS 531



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 163/313 (52%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD YT+   V+G+ K G ++ A  +++ M   G  P   TYN+LI G C  G ++ A
Sbjct: 296 GFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEA 355

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++M+++   P   TYN +I  L  E ++ EA  +   +  KGI+PD  TYN LI G
Sbjct: 356 VKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQG 415

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C   N   A  L+ EM  KG  P   TY  LI  L  + ++ EA  L +     G   +
Sbjct: 416 LCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARN 475

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +N LIDG C N  I  A  +  +M+   V  + VTYNTL+ G C+  +VEEA +L+D
Sbjct: 476 VITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMD 535

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G++PD       + TYN+L+   CK  +   A ++++ M S G  PD  TY +LI
Sbjct: 536 QMIMEGLRPD-------KFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLI 588

Query: 305 EGIASVDKAAESS 317
            G+    +   ++
Sbjct: 589 AGLCKAGRVEAAT 601



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 160/312 (51%), Gaps = 10/312 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +G+ PD  TY S + G+C       A  + ++MK  G  P   TYN LID  C +G 
Sbjct: 397 LTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGK 456

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   EM   G      TYN LI      +++ EA+++  +M  +G+  +S+TYN 
Sbjct: 457 LQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNT 516

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+    ++A  L D+MI +G++P   TY SL+    K   + +A  + +   + G
Sbjct: 517 LIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDG 576

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +  LI G C  G +E A  LL+ +    ++     YN ++    R+ + +EA 
Sbjct: 577 CEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAV 636

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           RL  +M  +   PD +       TY  + +GLC+   G + E  + + EM+ +G  P+ +
Sbjct: 637 RLFREMIEKAEAPDAV-------TYKIVFRGLCQGG-GPIGEAVDFVMEMLERGYVPEFS 688

Query: 299 TYFSLIEGIASV 310
           +++ L EG+ S+
Sbjct: 689 SFYMLAEGLFSL 700



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 164/333 (49%), Gaps = 30/333 (9%)

Query: 16  FVSGMCKEGRLEEASRMLEQMK-ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           F+      G   E  + ++ M+ E G+V     YN L++   +   L++       MV +
Sbjct: 130 FIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSR 189

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           GI P  ST+N+LI  L    ++  A  +++EM + G++PD  T+  ++ G+   GN   A
Sbjct: 190 GIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGA 249

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF-LAKGMLPDIVMFNALID 193
             + ++M+  G   T +T   L+    K+ R+ EA +  E   L +G  PD   FN L++
Sbjct: 250 MRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVN 309

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
           G    G+++ A  ++  M R    PD  TYN+L+ G C+ G+V+EA ++L+QM  R   P
Sbjct: 310 GLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSP 369

Query: 254 DHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELL 285
           + +++N                            P   TYN+LIQGLC ++   +A EL 
Sbjct: 370 NTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELY 429

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +EM +KG  PD+ TY  LI+ +    K  E+ N
Sbjct: 430 KEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALN 462


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 30/335 (8%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK-ENGLVPTAVTYNTLIDGYCNKGNL 61
           S  V+PD   Y + + G+CK GR +E   ++E+M+ + G  P  +TYN LIDG+C  G +
Sbjct: 376 SVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEI 435

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           E      DEM K+G+ P   T N L+  +    ++  A +   E   +G+  D++TY  L
Sbjct: 436 EKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTAL 495

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           IN +C   N +KA  L +EM+  G  P  + Y +LI   S+  RM +A  +       G+
Sbjct: 496 INAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGI 555

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD V +N LI G C      R F +LKEM+   + PD +TYNTL+    + G ++ A++
Sbjct: 556 RPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQK 615

Query: 242 LLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQGL 272
           ++ +M + G+ P   ++                              P  + YN LI  L
Sbjct: 616 VMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSL 675

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CKN +   A  L+ +M   G+TP+  TY ++ +G+
Sbjct: 676 CKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGL 710



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 158/311 (50%), Gaps = 8/311 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+  T  + V GMC+ GR+  A     + +  G+   AVTY  LI+ +CN  N
Sbjct: 445 MNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNN 504

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    +EM+K G  P A  Y  LI       +M +A  +L E+ + GI PD++ YN 
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNT 564

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+CR     + F +  EM   G++P  +TY +LI   SK   +  A ++    +  G
Sbjct: 565 LIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAG 624

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEA 239
           ++P +  + A+I+ +C NGN   A  + K+M    KV P+ V YN L++  C+  KV+ A
Sbjct: 625 VVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSA 684

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L++ MK  G+ P+         TYNA+ +GL   ++ +   E +  M+     PD  T
Sbjct: 685 VSLMEDMKIWGVTPNTT-------TYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYIT 737

Query: 300 YFSLIEGIASV 310
              L E +++V
Sbjct: 738 MEILTEWLSAV 748



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 16/310 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQM---KENGLV-----PTAVTYNTLIDGYCN 57
           +QP+  T+G  ++ MCK  R+++A  +LE+M   KE+G +     P  V YNTLIDG C 
Sbjct: 336 IQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK 395

Query: 58  KGNLEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
            G  +      + M  Q G  P   TYN LI       ++ +  ++  EM ++G+ P+ +
Sbjct: 396 VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVV 455

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           T N L+ G CR G    A +   E   +G++   +TYT+LI      N   +A +LF   
Sbjct: 456 TVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEM 515

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           L  G  PD +++  LI G    G +  A  +L E+ ++ + PD V YNTL+ G CR  K 
Sbjct: 516 LKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKF 575

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                +L +M+  G+KPD I       TYN LI    KN +   A++++R+M+  G+ P 
Sbjct: 576 HRVFEMLKEMEEAGLKPDTI-------TYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPT 628

Query: 297 DNTYFSLIEG 306
             TY ++I  
Sbjct: 629 VATYGAVINA 638



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 159/344 (46%), Gaps = 51/344 (14%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV   S+  G  ++ +C+  +      +  +M + G V  +   N+L+ G   +GN    
Sbjct: 265 GVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRM 324

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM------------------ 106
               ++MV+  I P   T+ +LI+ +   R++ +A ++L++M                  
Sbjct: 325 NELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVV 384

Query: 107 --------------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
                                      +KG  PD+ITYN LI+G+C+ G  +K   L DE
Sbjct: 385 IYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDE 444

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M  +G+ P ++T  +L+  + +  R+  A   F     +GM  D V + ALI+  C   N
Sbjct: 445 MNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNN 504

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E+A  L  EM +    PD + Y TL+ G  + G++ +A  +L ++K+ GI+PD +    
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTV---- 560

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
               YN LI G C+  +     E+L+EM   G+ PD  TY +LI
Sbjct: 561 ---CYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           +E   ++ +  E+G++ ++     LI   C        +    EM+K G +  ++  N L
Sbjct: 252 DEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSL 311

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM----- 141
           +  L  E      ++++++M E  I P+ +T+ ILIN  C+      A  + ++M     
Sbjct: 312 LTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKE 371

Query: 142 ---IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-KGMLPDIVMFNALIDGHCT 197
              I   ++P ++ Y +LI  L K  R  E   L E   + KG  PD + +N LIDG C 
Sbjct: 372 SGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCK 431

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G IE+   L  EM++  V P+ VT NTL+ G CR G+V  A     + +RRG+K D + 
Sbjct: 432 AGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAV- 490

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
                 TY ALI   C     + A EL  EM+  G +PD   Y++LI G +   + A++S
Sbjct: 491 ------TYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADAS 544



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 117/244 (47%), Gaps = 1/244 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+  Y + +SG  + GR+ +AS +L ++K+ G+ P  V YNTLI G+C    
Sbjct: 515 MLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNK 574

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               F    EM + G+ P   TYN LI        +  A  ++++M + G+VP   TY  
Sbjct: 575 FHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGA 634

Query: 121 LINGYCRCGNAKKAFSLHDEM-IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +IN YC  GN  +A  +  +M     + P  + Y  LI  L K N++  A  L E+    
Sbjct: 635 VINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIW 694

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P+   +NA+  G     ++E+ F  +  M     +PD +T   L       G++E  
Sbjct: 695 GVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERL 754

Query: 240 RRLL 243
           ++ +
Sbjct: 755 KKFV 758



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 149/321 (46%), Gaps = 45/321 (14%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEMAFS 66
           ++Y    ++S + + GR+++A +++++M E+             D  C  N    ++ FS
Sbjct: 189 NTYLRNVWLSILLRSGRVKDALKVIDEMFESN-----------DDSNCRPNDATGDILFS 237

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F  +  +               ELL E ++V   +++ + GE G++  S     LI   C
Sbjct: 238 FLLKRERN-------------EELLSEDEIV---NLVLKFGEHGVLISSFWMGRLITRLC 281

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R     + + L  EMI  G         SL+  L+++      ++L E  +   + P++V
Sbjct: 282 RNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVV 341

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMD--------RMKVHPDEVTYNTLMHGRCRQGKVEE 238
            F  LI+  C    ++ A  +L++M          + V PD V YNTL+ G C+ G+ +E
Sbjct: 342 TFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQE 401

Query: 239 ARRLLDQMK-RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
              L+++M+ ++G  PD I       TYN LI G CK  E +  +EL  EM  +G+ P+ 
Sbjct: 402 GLGLMERMRSQKGCAPDTI-------TYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNV 454

Query: 298 NTYFSLIEGIASVDKAAESSN 318
            T  +L+ G+    + + + N
Sbjct: 455 VTVNTLVGGMCRTGRVSSAVN 475


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 169/304 (55%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P + T+ + ++G+C EG+++EA  +  +M   G  P  ++YNT+I+G C  GN  MA
Sbjct: 153 GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMA 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M + G  P   TYN +I  L  +R + +A + L EM ++GI P+  TYN +++G
Sbjct: 213 VDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHG 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G   +A  L  EM+ + + P  +T T L+  L K+  + EA  +FE    KG+ P+
Sbjct: 273 FCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I  +NAL+DG+C    +  A  + + M R    P   +YN L++G C+  +++EA+ LL 
Sbjct: 333 ISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLA 392

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  + + PD +       TY+ L+QGLC+      A  + +EM S G+ P+  TY  L+
Sbjct: 393 EMYHKALNPDTV-------TYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILL 445

Query: 305 EGIA 308
           +G  
Sbjct: 446 DGFC 449



 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 174/307 (56%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +P+  +Y + ++G+CK G    A  + ++M++NG  P  VTYNT+ID  C    
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRL 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  EM+ +GI P   TYN ++H   +  ++ EA  + KEM  + ++PD++T  I
Sbjct: 244 VNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTI 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G   +A  + + M  KG++P + TY +L+     Q  M EA ++FE  + +G
Sbjct: 304 LVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +  +N LI+G C +  ++ A SLL EM    ++PD VTY+TLM G C+ G+ +EA 
Sbjct: 364 CAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEAL 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M   G+ P+ +       TY+ L+ G CK+   D A +LL+ M  K + P+   +
Sbjct: 424 NIFKEMCSYGLLPNLV-------TYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHH 476

Query: 301 FSLIEGI 307
             LIEG+
Sbjct: 477 TILIEGM 483



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+ +TY   V G C  G+L EA+R+ ++M    ++P  VT   L+DG C +G 
Sbjct: 254 MLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGM 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M ++G+ P  STYN L+    ++R M EA  + + M  +G  P   +YNI
Sbjct: 314 VSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNI 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +A SL  EM HK + P  +TY++L+  L +  R  EA  +F+   + G
Sbjct: 374 LINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++V ++ L+DG C +G+++ A  LLK M   K+ P+ V +  L+ G    GK+E A+
Sbjct: 434 LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAK 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++   GI+       PT  TY  +I+GL K    D A +L R+M   G  P+  +Y
Sbjct: 494 ELFSKLFADGIR-------PTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 546

Query: 301 FSLIEGI 307
             +I+G 
Sbjct: 547 NVMIQGF 553



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 166/314 (52%), Gaps = 7/314 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  + Y+    ++ +C+   ++ A  +L +M + G+ PTA T+N LI+G CN+G ++ A
Sbjct: 118 GVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEA 177

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EMV++G  P   +YN +I+ L        A D+ K+M + G  PD +TYN +I+ 
Sbjct: 178 VELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDS 237

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A     EM+ +GI P + TY  ++       ++ EA +LF+  + + ++PD
Sbjct: 238 LCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPD 297

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V    L+DG C  G +  A  + + M    V P+  TYN LM G C Q  + EA+++ +
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFE 357

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M R+G  P   S       YN LI G CK++  D A+ LL EM  K + PD  TY +L+
Sbjct: 358 IMIRQGCAPGVHS-------YNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLM 410

Query: 305 EGIASVDKAAESSN 318
           +G+    +  E+ N
Sbjct: 411 QGLCQFGRPKEALN 424



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 35/281 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD+ T    V G+CKEG + EA  + E M E G+ P   TYN L+DGYC +  
Sbjct: 289 MVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRL 348

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
           +  A    + M++QG  P   +YN+LI+     R+M EA  +L EM  K           
Sbjct: 349 MNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYST 408

Query: 110 ------------------------GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                   G++P+ +TY+IL++G+C+ G+  +A  L   M  K 
Sbjct: 409 LMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK 468

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P ++ +T LI  +    ++  A +LF    A G+ P I  +  +I G    G  + A+
Sbjct: 469 LEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAY 528

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            L ++M+     P+  +YN ++ G  +      A RL+D+M
Sbjct: 529 DLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 569



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 112/227 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P  ++Y   ++G CK  R++EA  +L +M    L P  VTY+TL+ G C  G 
Sbjct: 359 MIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGR 418

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   EM   G++P   TY++L+        + EA  +LK M EK + P+ + + I
Sbjct: 419 PKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTI 478

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G    G  + A  L  ++   GI+PT+ TYT +I  L K+    EA  LF      G
Sbjct: 479 LIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDG 538

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            LP+   +N +I G   N +   A  L+ EM   +   +  T+  L+
Sbjct: 539 FLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLL 585


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 173/345 (50%), Gaps = 27/345 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK     PD+ +Y + +  +CK+G+L EA  +L  MK NGL P   T+N L+ GYC  G 
Sbjct: 74  MKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLGW 133

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D M +  ++P   TY  LI  L  + K+ EA  +  EM    ++P  +TYN+
Sbjct: 134 LKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNM 193

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING   C ++ K F L DEM  KG++P  +TY  ++    K+ +M  A          G
Sbjct: 194 LINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESG 253

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V FN L +G+C  G +  AF ++ EM R  +  + VT NT++H  C + K+++A 
Sbjct: 254 FSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAY 313

Query: 241 RLLDQMKRRGIKPDHISFN------------------------PTRLTYNALIQGLCKNQ 276
           +LL    +RG   D +S+                         P+ +TY  +I GLC++ 
Sbjct: 314 KLLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSG 373

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAESSN 318
           + D + +   E++  G+ PD  TY ++I G      VDKA    N
Sbjct: 374 KTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRN 418



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 168/316 (53%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+P++ TY   V    KEG+++ A   L +M+E+G  P  VT+NTL +GYC  G 
Sbjct: 214 MEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGR 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF   DEM ++G+   + T N ++H L  ERK+ +A  +L    ++G   D ++Y  
Sbjct: 274 LSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGT 333

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY + G +       DEM  K I P+++TY ++I  L +  +  ++       L  G
Sbjct: 334 LIMGYFKVGKS----XXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +N +I G+C  G +++AF    +M +    PD  T N L+ G C +G +++A 
Sbjct: 390 LVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKAL 449

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L      +G   D +       T+N +I GLC+    + A +LL EM  K + PD  T+
Sbjct: 450 KLFKTWISKGKAIDAV-------TFNTIISGLCEEGRFEEAFDLLAEMEEKKLGPDCYTH 502

Query: 301 FSLIEGIASVDKAAES 316
            +++  +A   +  E+
Sbjct: 503 NAILSALADAGRMKEA 518



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 177/347 (51%), Gaps = 38/347 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V PD  TY + + G+CK+G+++EA R+ ++M+   L+P  VTYN LI+G     +
Sbjct: 144 MARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSS 203

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               F   DEM  +G+ P A TYN+++   + E KM  A + L++M E G  PD +T+N 
Sbjct: 204 SLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNT 263

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L NGYC+ G   +AF + DEM  KG++   +T  +++  L  + ++ +A +L  +   +G
Sbjct: 264 LSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRG 323

Query: 181 -------------------------------MLPDIVMFNALIDGHCTNGNIERAFSLLK 209
                                          ++P I+ +  +I G C +G  +++     
Sbjct: 324 YFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCN 383

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           E+    + PD+ TYNT++ G CR+G+V++A    ++M ++  KPD         T N L+
Sbjct: 384 ELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFKPD-------LFTCNILV 436

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +GLC     D A +L +  +SKG   D  T+ ++I G+    +  E+
Sbjct: 437 RGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGRFEEA 483



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 167/354 (47%), Gaps = 47/354 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD  T+ +  +G CK GRL EA RM+++M   GL   +VT NT++   C +  
Sbjct: 249 MEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERK 308

Query: 61  LEMAFSF-------------------------------RDEMVKQGIMPTASTYNLLIHE 89
           L+ A+                                  DEM ++ I+P+  TY  +I  
Sbjct: 309 LDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIITYGTMIGG 368

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
           L    K  ++ D   E+ E G+VPD  TYN +I GYCR G   KAF   ++M+ K  +P 
Sbjct: 369 LCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFKPD 428

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + T   L+  L  +  + +A +LF+ +++KG   D V FN +I G C  G  E AF LL 
Sbjct: 429 LFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGRFEEAFDLLA 488

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH-ISFN--------- 259
           EM+  K+ PD  T+N ++      G+++EA   +  +  +G   D  IS N         
Sbjct: 489 EMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIVEQGKLQDQTISLNKRKTESSSE 548

Query: 260 ------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                 P  + ++  I  LC   +   A  +++E   KGI    +TY SL+EG+
Sbjct: 549 TSQESDPNSVAFSEQINELCTQGKYKDAMHMIQESTQKGIILHKSTYISLMEGL 602



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 165/309 (53%), Gaps = 7/309 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+ ++ T+   + G C E +L EA  ++ +MK     P  V+YNT++D  C KG L  A
Sbjct: 43  GVEVNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEA 102

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M   G+ P  +T+N+L+        + EA +++  M    ++PD  TY  LI G
Sbjct: 103 RDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGG 162

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +AF L DEM +  + P ++TY  LI    + +  ++  +L +    KG+ P+
Sbjct: 163 LCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPN 222

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N ++  +   G ++ A + L++M+     PD VT+NTL +G C+ G++ EA R++D
Sbjct: 223 AVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMD 282

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R+G+K + +       T N ++  LC  ++ D A +LL     +G   D+ +Y +LI
Sbjct: 283 EMSRKGLKMNSV-------TLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLI 335

Query: 305 EGIASVDKA 313
            G   V K+
Sbjct: 336 MGYFKVGKS 344



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 147/284 (51%), Gaps = 10/284 (3%)

Query: 36  MKENGLVPTAVTYNTLIDG---YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           MK   L P  +T NTLI     Y +K ++ ++ +   +++K G+    +T+N+LI    +
Sbjct: 1   MKRLHLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCI 60

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           E K+ EA  ++ +M      PD+++YN +++  C+ G   +A  L  +M + G+ P   T
Sbjct: 61  ENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNT 120

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           +  L+    K   + EA ++ +      +LPD+  +  LI G C +G I+ AF L  EM+
Sbjct: 121 FNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEME 180

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
            +K+ P  VTYN L++G        +   L+D+M+ +G+KP+ +       TYN +++  
Sbjct: 181 NLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAV-------TYNVVVKWY 233

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K  + D A   LR+M   G +PD  T+ +L  G     + +E+
Sbjct: 234 VKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEA 277



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 23/186 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  +PD +T    V G+C EG L++A ++ +     G    AVT+NT+I G C +G 
Sbjct: 420 MVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGR 479

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-------- 112
            E AF    EM ++ + P   T+N ++  L    +M EA++ +  + E+G +        
Sbjct: 480 FEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEFMSGIVEQGKLQDQTISLN 539

Query: 113 ---------------PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
                          P+S+ ++  IN  C  G  K A  +  E   KGI     TY SL+
Sbjct: 540 KRKTESSSETSQESDPNSVAFSEQINELCTQGKYKDAMHMIQESTQKGIILHKSTYISLM 599

Query: 158 FVLSKQ 163
             L K+
Sbjct: 600 EGLIKR 605



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 10/138 (7%)

Query: 183 PDIVMFNALIDG---HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           P+++  N LI     + +  ++  + ++  ++ ++ V  +  T+N L+ G C + K+ EA
Sbjct: 8   PNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCIENKLSEA 67

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+ +MK       H S  P  ++YN ++  LCK  + + A +LL +M + G+ P+ NT
Sbjct: 68  IGLIGKMK-------HFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNT 120

Query: 300 YFSLIEGIASVDKAAESS 317
           +  L+ G   +    E++
Sbjct: 121 FNILVSGYCKLGWLKEAA 138


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 157/296 (53%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TY + +  +CK+ R+ EA  +   MK  G+ P   TYN+LI G CN   
Sbjct: 36  MGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSR 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  +EM+   IMP   T++LLI+    E  + EA  +LK M E G+ P+ +TY+ 
Sbjct: 96  WREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSS 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGY       +A  L D MI KG +P + +Y  LI    K  R+ EA QLF   + +G
Sbjct: 156 LMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 215

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N LIDG C  G +  A  L K M      PD  TY+ L+ G C+QG + +A 
Sbjct: 216 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 275

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           RL   M+   +KP+ +        YN LI  +CK++    A +L  E+  +G+ P+
Sbjct: 276 RLFRAMQSTYLKPNMV-------MYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 324



 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 163/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG QPD +TY + ++G+CK G    A+ + ++M E G  P  VTY+T+ID  C    
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +GI P   TYN LI  L    +  EA  ML EM    I+P+ +T+++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C+ GN  +A  +   M   G++P ++TY+SL+   S Q  + EA +LF+  + KG
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  +N LI+G+C    I  A  L  EM    + PD V+YNTL+ G C+ G++ EA 
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   G  PD         TY+ L+ G CK      A  L R M S  + P+   Y
Sbjct: 241 DLFKNMLTNGNLPD-------LCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMY 293

Query: 301 FSLIEGIASVDKAAES 316
             LI+ +       E+
Sbjct: 294 NILIDAMCKSRNLKEA 309



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 98/185 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+P+  TY S ++G   +  + EA ++ + M   G  P   +YN LI+GYC    
Sbjct: 141 MTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM+ QG+ P   +YN LI  L    ++ EA D+ K M   G +PD  TY+I
Sbjct: 201 IGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSI 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G   KAF L   M    ++P M+ Y  LI  + K   + EA +LF     +G
Sbjct: 261 LLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQG 320

Query: 181 MLPDI 185
           + P++
Sbjct: 321 LQPNM 325



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD  TY T+++G C+ G+   A  L  +M   G +PD +       TY+ +I  LCK++
Sbjct: 7   QPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVV-------TYSTIIDSLCKDR 59

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
             + A ++   M +KGI+P+  TY SLI+G+ +  +  E+S
Sbjct: 60  RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREAS 100



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 41/86 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY   + G CK+G L +A R+   M+   L P  V YN LID  C   N
Sbjct: 246 MLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRN 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLL 86
           L+ A     E+  QG+ P    + L 
Sbjct: 306 LKEARKLFSELFVQGLQPNMKHWKLF 331


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 167/311 (53%), Gaps = 7/311 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV    YT    ++G+CK+G++  A  +L+ +   GLVPT V YNTLI+GYC  G LE A
Sbjct: 150 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 209

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           FS   +M  + I P   TYN LI+ L    ++  A D+L EM + G+ P   T+N LI+ 
Sbjct: 210 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 269

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y R G  +K F +  EM   G++P +++Y S++    K  ++ EA  + ++   K +LP+
Sbjct: 270 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 329

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             ++NA+ID +  +G  ++AF L+++M    + P  VTYN L+ G C Q ++ EA  +++
Sbjct: 330 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 389

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +    + PD +S       YN LI   C     D A +L + M   GI     TY  LI
Sbjct: 390 SLSNHRLIPDAVS-------YNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 442

Query: 305 EGIASVDKAAE 315
            G+    +  E
Sbjct: 443 SGLGGAGRLNE 453



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 172/309 (55%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++++Y   ++GM + GR  +A  + ++M E  ++P  +TYNT+IDG+   G+LE  F  
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RD+MV  G+ P A TYN+L+  L    +M E   +L EM  + +VPD  TY+IL +G  R
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G++K   SL  + +  G+     T + L+  L K  ++  A+++ ++ +  G++P  V+
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C  G +E AFS   +M    + PD +TYN L++G C+  ++  A+ LL +M+
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G+       NPT  T+N LI    +  + +    +L EM   G+ P+  +Y S++   
Sbjct: 253 DNGV-------NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 305

Query: 308 ASVDKAAES 316
               K  E+
Sbjct: 306 CKNGKIPEA 314



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P++ TY   +SG+C+ GR+ E S +L++M    +VP   TY+ L DG    G+
Sbjct: 76  MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGD 135

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   S   + +K G+     T ++L++ L  + K+  A+++L+ +   G+VP  + YN 
Sbjct: 136 SKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNT 195

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G  + AFS   +M  + I+P  +TY +LI  L K  R+  A  L       G
Sbjct: 196 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 255

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  FN LID +   G +E+ F +L EM    + P+ V+Y ++++  C+ GK+ EA 
Sbjct: 256 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 315

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LD M  + + P+   +N                            P+ +TYN LI+GL
Sbjct: 316 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 375

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
           C   +   AEE++  + +  + PD  +Y +LI       ++DKA
Sbjct: 376 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 419



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 158/297 (53%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+CK  R+  A  +L +M++NG+ PT  T+NTLID Y   G 
Sbjct: 216 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 275

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F    EM + G+ P   +Y  +++      K+ EA  +L +M  K ++P++  YN 
Sbjct: 276 LEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 335

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G   +AF L ++M   GI P+++TY  LI  L  Q+++ EA+++  +     
Sbjct: 336 IIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR 395

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V +N LI   C  GNI++A  L + M +  +     TY+ L+ G    G++ E  
Sbjct: 396 LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEME 455

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            L  +M +  +        P+   +N +++   K      AE+L +EM+ K    DD
Sbjct: 456 YLYQKMMQNNVV-------PSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 505



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 127/241 (52%), Gaps = 7/241 (2%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P A +YN++I  +    +  +A ++  EM E+ ++P+ ITYN +I+G+ + G+ +  F L
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
            D+M+  G++P  +TY  L+  L +  RM E   L +   ++ M+PD   ++ L DG   
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           NG+ +   SL  +  +  V   + T + L++G C+ GKV  A  +L  +   G+ P    
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP---- 188

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
              TR+ YN LI G C+  E + A     +M S+ I PD  TY +LI G+   ++   + 
Sbjct: 189 ---TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 245

Query: 318 N 318
           +
Sbjct: 246 D 246


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 167/311 (53%), Gaps = 7/311 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV    YT    ++G+CK+G++  A  +L+ +   GLVPT V YNTLI+GYC  G LE A
Sbjct: 198 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 257

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           FS   +M  + I P   TYN LI+ L    ++  A D+L EM + G+ P   T+N LI+ 
Sbjct: 258 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 317

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y R G  +K F +  EM   G++P +++Y S++    K  ++ EA  + ++   K +LP+
Sbjct: 318 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 377

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             ++NA+ID +  +G  ++AF L+++M    + P  VTYN L+ G C Q ++ EA  +++
Sbjct: 378 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 437

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +    + PD +S       YN LI   C     D A +L + M   GI     TY  LI
Sbjct: 438 SLSNHRLIPDAVS-------YNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 490

Query: 305 EGIASVDKAAE 315
            G+    +  E
Sbjct: 491 SGLGGAGRLNE 501



 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 174/326 (53%), Gaps = 28/326 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++++Y   ++GM + GR  +A  + ++M E  ++P  +TYNT+IDG+   G+LE  F  
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RD+MV  G+ P A TYN+L+  L    +M E   +L EM  + +VPD  TY+IL +G  R
Sbjct: 121 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 180

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G++K   SL  + +  G+     T + L+  L K  ++  A+++ ++ +  G++P  V+
Sbjct: 181 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 240

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C  G +E AFS   +M    + PD +TYN L++G C+  ++  A+ LL +M+
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
             G+ P   +FN                            P  ++Y +++   CKN +  
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 360

Query: 280 LAEELLREMVSKGITPDDNTYFSLIE 305
            A  +L +M  K + P+   Y ++I+
Sbjct: 361 EAVAILDDMFHKDVLPNAQVYNAIID 386



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P++ TY   +SG+C+ GR+ E S +L++M    +VP   TY+ L DG    G+
Sbjct: 124 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGD 183

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   S   + +K G+     T ++L++ L  + K+  A+++L+ +   G+VP  + YN 
Sbjct: 184 SKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNT 243

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G  + AFS   +M  + I+P  +TY +LI  L K  R+  A  L       G
Sbjct: 244 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 303

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  FN LID +   G +E+ F +L EM    + P+ V+Y ++++  C+ GK+ EA 
Sbjct: 304 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 363

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LD M  + + P+   +N                            P+ +TYN LI+GL
Sbjct: 364 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 423

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
           C   +   AEE++  + +  + PD  +Y +LI       ++DKA
Sbjct: 424 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 467



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 158/297 (53%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+CK  R+  A  +L +M++NG+ PT  T+NTLID Y   G 
Sbjct: 264 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F    EM + G+ P   +Y  +++      K+ EA  +L +M  K ++P++  YN 
Sbjct: 324 LEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G   +AF L ++M   GI P+++TY  LI  L  Q+++ EA+++  +     
Sbjct: 384 IIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V +N LI   C  GNI++A  L + M +  +     TY+ L+ G    G++ E  
Sbjct: 444 LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEME 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            L  +M +  +        P+   +N +++   K      AE+L +EM+ K    DD
Sbjct: 504 YLYQKMMQNNVV-------PSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 553



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 146/312 (46%), Gaps = 41/312 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +PD++ +   V      G L EA  ML +M  +G  P                 
Sbjct: 18  LASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP----------------- 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                            P A +YN++I  +    +  +A ++  EM E+ ++P+ ITYN 
Sbjct: 61  -----------------PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNT 103

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G+ +  F L D+M+  G++P  +TY  L+  L +  RM E   L +   ++ 
Sbjct: 104 MIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 163

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD   ++ L DG   NG+ +   SL  +  +  V   + T + L++G C+ GKV  A 
Sbjct: 164 MVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAE 223

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  +   G+ P       TR+ YN LI G C+  E + A     +M S+ I PD  TY
Sbjct: 224 EVLQSLVNAGLVP-------TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITY 276

Query: 301 FSLIEGIASVDK 312
            +LI G+   ++
Sbjct: 277 NALINGLCKAER 288


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 176/318 (55%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG  ++ MCK G+   A  +L +M+E  +   AV Y+ +IDG C  G+
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF+  +EM  +G      TYN LI       +  +   +L++M ++ I P+ +T+++
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G  ++A  L  EM+ +GI P  +TY SLI    K+NR+ EA Q+ +  ++KG
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI+ FN LI+G+C    I+    L +EM    V  + VTYNTL+ G C+ GK+E A+
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M  R ++PD +S       Y  L+ GLC N E + A E+  ++    +  D   Y
Sbjct: 459 KLFQEMVSRRVRPDIVS-------YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIY 511

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+ +  K  ++ +
Sbjct: 512 MIIIHGMCNASKVDDAWD 529



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 189/342 (55%), Gaps = 31/342 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+  + + ++G+C E R+ EA  ++++M E G  PT +T NTL++G C  G +  A
Sbjct: 153 GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV+ G  P   TY  +++ +    +   A ++L++M E+ I  D++ Y+I+I+G
Sbjct: 213 VVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   AF+L +EM  KG +  ++TY +LI       R  +  +L  + + + + P+
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ LID     G +  A  LLKEM +  + P+ +TYN+L+ G C++ ++EEA +++D
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVD 392

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  +G  PD ++FN                               +TYN L+QG C++ 
Sbjct: 393 LMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSG 452

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           + ++A++L +EMVS+ + PD  +Y  L++G+     ++KA E
Sbjct: 453 KLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALE 494



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 180/345 (52%), Gaps = 28/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R ++ D+  Y   + G+CK+G L+ A  +  +M+  G     +TYNTLI G+CN G 
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       +M+K+ I P   T+++LI   + E K+ EAD +LKEM ++GI P++ITYN 
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+    ++A  + D MI KG  P ++T+  LI    K NR+ +  +LF     +G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ + V +N L+ G C +G +E A  L +EM   +V PD V+Y  L+ G C  G++E+A 
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493

Query: 241 RLLDQMKRRGIKPD--------HISFNPTRL--------------------TYNALIQGL 272
            +  ++++  ++ D        H   N +++                     YN +I  L
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISEL 553

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           C+      A+ L R+M  +G  PD+ TY  LI      D A  ++
Sbjct: 554 CRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAA 598



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 159/309 (51%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +    S + K  + E    + +QM+  G+  +  T + +I+ +C    L  AFS 
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P    +N L++ L +E ++ EA +++  M E G  P  IT N L+NG C 
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  L D M+  G QP  +TY  ++ V+ K  +   A +L      + +  D V 
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ +IDG C +G+++ AF+L  EM+      D +TYNTL+ G C  G+ ++  +LL  M 
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +R I P+ +       T++ LI    K  +   A++LL+EM+ +GI P+  TY SLI+G 
Sbjct: 326 KRKISPNVV-------TFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378

Query: 308 ASVDKAAES 316
              ++  E+
Sbjct: 379 CKENRLEEA 387



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 144/292 (49%), Gaps = 7/292 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           + ++A  +   M ++  +PT + +N L          E+  +   +M  +GI  +  T +
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           ++I+     RK+  A   + ++ + G  PD++ +N L+NG C      +A  L D M+  
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +PT++T  +L+  L    ++ +A  L +  +  G  P+ V +  +++  C +G    A
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             LL++M+   +  D V Y+ ++ G C+ G ++ A  L ++M+ +G K D I       T
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII-------T 300

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN LI G C     D   +LLR+M+ + I+P+  T+  LI+      K  E+
Sbjct: 301 YNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 164/308 (53%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  T+   +  +CK+G ++E+ R+L ++ + G+     T+N  I G C KG L  A
Sbjct: 211 GIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGA 270

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S  D ++++G+ P   TYN LI  L     +VEA+  L ++   G+ PD  TYN LI+G
Sbjct: 271 MSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDG 330

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G  + A  +    I KG  P   TY SLI  L + + +  A  LF   L KG+ P 
Sbjct: 331 YCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPT 390

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++++N LI G C  G I +A  ++ EM       D  TYN +++G C+ G V +A  L++
Sbjct: 391 VILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMN 450

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
               +G  PD         T+N LI G CK  + +   ++L +M S G+TPD  TY S++
Sbjct: 451 DAIAKGYVPD-------VFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVL 503

Query: 305 EGIASVDK 312
            G++   K
Sbjct: 504 NGLSKAVK 511



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 174/334 (52%), Gaps = 28/334 (8%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+  + +T+  F+ G+C++G L  A  ML+ +   GL P  VTYNTLI G C   N+  
Sbjct: 245 KGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVE 304

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +  ++V  G+ P   TYN LI        +  A+ +L+    KG VPD  TY  LIN
Sbjct: 305 AEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLIN 364

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+     +A +L +  + KG++PT++ Y  LI  L ++  +++A Q+       G   
Sbjct: 365 GLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSS 424

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I+G C  G +  A +L+ +       PD  T+NTL+ G C+Q K+E   ++L
Sbjct: 425 DIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQIL 484

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
           ++M   G+ PD I++N                            P ++TYN L + LCK 
Sbjct: 485 NKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKA 544

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            + + A +L+ E+++KGITPD  ++ ++I G A+
Sbjct: 545 GKVNEALDLVDEILNKGITPDTVSFATIISGFAN 578



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 175/320 (54%), Gaps = 11/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G+ PD YT+   +   C+  R   A R+L  M   G    AV Y T++ G+  +  
Sbjct: 137 MKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENY 196

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+   ++M++ GI P  ST+N L+H L  + ++ E++ +L ++ +KG+  +  T+NI
Sbjct: 197 RVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNI 256

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G CR G    A S+ D +I +G+ P ++TY +LI  L K + ++EA++     +  G
Sbjct: 257 FIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGG 316

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +N LIDG+C  G ++ A  +L+        PDE TY +L++G C+  +++ A 
Sbjct: 317 LEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRAL 376

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            L +    +G+K       PT + YN LI+GLC  QEG +  A +++ EM   G + D  
Sbjct: 377 ALFNAALGKGLK-------PTVILYNMLIKGLC--QEGLILQALQMMNEMSENGCSSDIW 427

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY  +I G+  +   ++++N
Sbjct: 428 TYNLVINGLCKMGCVSDANN 447



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 156/305 (51%), Gaps = 6/305 (1%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  PD +TY S ++G+C+   ++ A  +       GL PT + YN LI G C +G +  
Sbjct: 350 KGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQ 409

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EM + G      TYNL+I+ L     + +A++++ +   KG VPD  T+N LI+
Sbjct: 410 ALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLID 469

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+    +    + ++M   G+ P ++TY S++  LSK  +  +  + FE  + KG +P
Sbjct: 470 GYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVP 529

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + + +N L +  C  G +  A  L+ E+    + PD V++ T++ G    G ++ A +L 
Sbjct: 530 NKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLF 589

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M  +  K  H     T  TYN +I    +  +  + E+L  EM + G  PD  TY  +
Sbjct: 590 RRMGEQ-YKVSH-----TTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVM 643

Query: 304 IEGIA 308
           I+G  
Sbjct: 644 IDGFC 648



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 150/302 (49%), Gaps = 7/302 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P   +Y + ++ + + G  ++A ++  +MK  G+VP   T+   I  +C       A  
Sbjct: 108 EPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALR 167

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             + MV QG    A  Y  ++     E   VEA ++  +M   GI PD  T+N L++  C
Sbjct: 168 LLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLC 227

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G  +++  L ++++ KG+   + T+   I  L ++  +  A  + ++ + +G+ PD+V
Sbjct: 228 KKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVV 287

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N LI G C N N+  A   L ++    + PD  TYNTL+ G C+ G ++ A ++L   
Sbjct: 288 TYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGA 347

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G  PD         TY +LI GLC+N E D A  L    + KG+ P    Y  LI+G
Sbjct: 348 ICKGFVPD-------EFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKG 400

Query: 307 IA 308
           + 
Sbjct: 401 LC 402



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 147/291 (50%), Gaps = 7/291 (2%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           ++G+++EA  + E+M      P+ ++YN +++     G  + A      M   GI+P   
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVY 147

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           T+ + I      ++   A  +L  M  +G   +++ Y  ++ G+       +A+ L ++M
Sbjct: 148 TFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDM 207

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +  GI P + T+  L+  L K+  + E+++L    L KGM  ++  FN  I G C  G +
Sbjct: 208 LRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGML 267

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
             A S+L  + R  + PD VTYNTL+ G C+   V EA + L ++   G++PD       
Sbjct: 268 SGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDG------ 321

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             TYN LI G CK      AE++L+  + KG  PD+ TY SLI G+   D+
Sbjct: 322 -FTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDE 371



 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 151/321 (47%), Gaps = 20/321 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   D +TY   ++G+CK G + +A+ ++      G VP   T+NTLIDGYC +  
Sbjct: 417 MSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLK 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML---KEMGEKGIVPDSIT 117
           +E      ++M   G+ P   TYN +++ L    K V+ +D++   + M EKG VP+ IT
Sbjct: 477 METTIQILNKMWSHGVTPDVITYNSVLNGL---SKAVKNEDLMETFETMVEKGCVPNKIT 533

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YNIL    C+ G   +A  L DE+++KGI P  +++ ++I   +    +  A QLF    
Sbjct: 534 YNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMG 593

Query: 178 AKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
            +  +      +N +I+      ++     L  EM      PD  TY  ++ G C  G  
Sbjct: 594 EQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNT 653

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +   + L +M  +G       F P+  T+  +I  LC       A +++  MV  GI P+
Sbjct: 654 DSGYKFLLEMIEKG-------FIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706

Query: 297 DNTYFSLIEGIASVDKAAESS 317
                 ++  I+  DK   ++
Sbjct: 707 ------VVNSISEADKKVVAA 721



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 135/266 (50%), Gaps = 15/266 (5%)

Query: 49  NTLIDG--------YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100
           N+L++G        Y  KG ++ A    + M      P+  +YN +++ L+      +A 
Sbjct: 72  NSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAH 131

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
            +   M   GIVPD  T+ I I  +CR      A  L + M+ +G Q   + Y +++   
Sbjct: 132 KVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGF 191

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            ++N  +EA +LF + L  G+ PD+  FN L+   C  G ++ +  LL ++ +  +  + 
Sbjct: 192 YEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNL 251

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            T+N  + G CR+G +  A  +LD + R G+ PD +       TYN LI GLCKN     
Sbjct: 252 FTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVV-------TYNTLICGLCKNSNVVE 304

Query: 281 AEELLREMVSKGITPDDNTYFSLIEG 306
           AE+ L ++V+ G+ PD  TY +LI+G
Sbjct: 305 AEKYLHKLVNGGLEPDGFTYNTLIDG 330


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 173/312 (55%), Gaps = 7/312 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V  D Y++G  + G C+ G +E++  +L +++E G  P  V Y TLIDG C +G +E A 
Sbjct: 159 VDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAK 218

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM K G++    TY +LIH L       +  +M ++M E G+ P+  TYN ++N +
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQH 278

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G  K AF L DEM  +G+   ++TY +LI  L ++ +  EA+++ +   + G+ P++
Sbjct: 279 CKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNL 338

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N LIDG C  G + +A SL +++    + P  VTYN L+ G C++G    A +++ +
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M+ RGIK       P+++TY  LI    +    + A +L   M   G+TPD +TY  LI 
Sbjct: 399 MEERGIK-------PSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIH 451

Query: 306 GIASVDKAAESS 317
           G     +  E+S
Sbjct: 452 GFCIKGQMNEAS 463



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV P+ YTY   ++  CK+GR ++A ++ ++M+E G+    VTYNTLI G C +  
Sbjct: 259 MQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMK 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M   GI P   TYN LI       K+ +A  + +++  +G+ P  +TYNI
Sbjct: 319 ANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G+   A  +  EM  +GI+P+ +TYT LI   ++ + M +A QL       G
Sbjct: 379 LVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  ++ LI G C  G +  A  L K M   K+ P++V YNT++ G C++G    A 
Sbjct: 439 LTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRAL 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           RL  +M+ + + P+  S       Y  +I+ LCK ++   AE L+ +M+  GI P D+
Sbjct: 499 RLFREMEEKELPPNVAS-------YRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDS 549



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  + +TY   + G+ K G  ++   M E+M+E+G+ P   TYN +++ +C  G 
Sbjct: 224 MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGR 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   DEM ++G+     TYN LI  L  E K  EA+ ++ +M   GI P+ ITYN 
Sbjct: 284 TKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNT 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G   KA SL  ++  +G+ P+++TY  L+    K+     A ++ +    +G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + +  LID      N+E+A  L   M+ + + PD  TY+ L+HG C +G++ EA 
Sbjct: 404 IKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL   M  + ++P+       ++ YN ++ G CK      A  L REM  K + P+  +Y
Sbjct: 464 RLFKLMVAKKLEPN-------KVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASY 516

Query: 301 FSLIEGIASVDKAAES 316
             +IE +    K+ E+
Sbjct: 517 RYMIEVLCKERKSKEA 532



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 157/307 (51%), Gaps = 9/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G  P+   Y + + G CK G +E+A  +  +M + GLV    TY  LI G    G 
Sbjct: 189 LREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGI 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  F   ++M + G+ P   TYN ++++   + +  +A  +  EM E+G+  + +TYN 
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNT 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G CR   A +A  + D+M   GI P ++TY +LI       ++ +A  L  +  ++G
Sbjct: 309 LIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +N L+ G C  G+   A  ++KEM+   + P ++TY  L+    R   +E+A 
Sbjct: 369 LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAI 428

Query: 241 RLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           +L   M+  G+ PD H        TY+ LI G C   + + A  L + MV+K + P+   
Sbjct: 429 QLRSPMEELGLTPDVH--------TYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVI 480

Query: 300 YFSLIEG 306
           Y +++ G
Sbjct: 481 YNTMVLG 487



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 113/204 (55%), Gaps = 4/204 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSRG+ P   TY   VSG CK+G    A +++++M+E G+ P+ +TY  LID +    N
Sbjct: 364 LKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDN 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   R  M + G+ P   TY++LIH   ++ +M EA  + K M  K + P+ + YN 
Sbjct: 424 MEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNT 483

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ GYC+ G++ +A  L  EM  K + P + +Y  +I VL K+ +  EA+ L E  +  G
Sbjct: 484 MVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTG 543

Query: 181 MLPDIVMFN----ALIDGHCTNGN 200
           + P   + N    A  D H ++ N
Sbjct: 544 IDPSDSILNLISRAKNDSHVSSNN 567



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 115/230 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G+ P+  TY + + G C  G+L +A  +   +K  GL P+ VTYN L+ G+C KG+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM ++GI P+  TY +LI        M +A  +   M E G+ PD  TY++
Sbjct: 389 TSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSV 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G   +A  L   M+ K ++P  + Y +++    K+     A +LF     K 
Sbjct: 449 LIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKE 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           + P++  +  +I+  C     + A  L+++M    + P +   N +   +
Sbjct: 509 LPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRAK 558



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 131/326 (40%), Gaps = 97/326 (29%)

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVP----------------------------- 113
           Y ++I+  +  + +  +     EM +KG VP                             
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 114 -----DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
                D  ++ I+I G C  G  +K+F L  E+   G  P ++ YT+LI    K+  + +
Sbjct: 157 IKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEK 216

Query: 169 ADQLF-----------------------------------ENFLAKGMLPDIVMFNALID 193
           A  LF                                   E     G+ P++  +N +++
Sbjct: 217 AKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
            HC +G  + AF L  EM    V  + VTYNTL+ G CR+ K  EA +++DQMK  GI P
Sbjct: 277 QHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINP 336

Query: 254 DHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELL 285
           + I++N                            P+ +TYN L+ G CK  +   A +++
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVV 396

Query: 286 REMVSKGITPDDNTYFSLIEGIASVD 311
           +EM  +GI P   TY  LI+  A +D
Sbjct: 397 KEMEERGIKPSKITYTILIDTFARMD 422



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 76/268 (28%)

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-FVL--SKQNRMI------- 167
           Y ++IN Y +  +   + S  +EM+ KG  P    + +L+ FV+  S  N+         
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 168 ------------------EADQLFENF--LAK----GMLPDIVMFNALIDGHCTNGNIER 203
                             EA ++ ++F  L +    G  P++V++  LIDG C  G IE+
Sbjct: 157 IKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEK 216

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHG---------------------------------- 229
           A  L  EM +  +  +E TY  L+HG                                  
Sbjct: 217 AKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 230 -RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
             C+ G+ ++A +L D+M+ RG+  + +       TYN LI GLC+  + + A +++ +M
Sbjct: 277 QHCKDGRTKDAFKLFDEMRERGVSCNIV-------TYNTLIGGLCREMKANEANKVMDQM 329

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAES 316
            S GI P+  TY +LI+G   V K  ++
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKA 357


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 173/339 (51%), Gaps = 42/339 (12%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG    +Y + + ++G CK  ++ EA     +MKE G  P  VTY TLIDGYC  GN+E
Sbjct: 492 ARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVE 551

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF  +++M K+ I+P+   YN LI  L   +K  E  D+L EM  KG+ P+ +TY  LI
Sbjct: 552 EAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLI 611

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN------F 176
            G+C  G   KAF+ + +MI KG  P ++  + ++  L +  R+ EA+ L +       F
Sbjct: 612 AGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVF 671

Query: 177 LAKGM-----------------------------LPDIVMFNALIDGHCTNGNIERAFSL 207
           L  G                              LP+ V++N  I G C +G ++ A  +
Sbjct: 672 LDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKI 731

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
              +      PD  TY TL+HG    G V +A  L D+M +RG+ P+ I       TYNA
Sbjct: 732 FSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNII-------TYNA 784

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LI GLCK+   D A++L  ++  KG+ P+  +Y  LI+G
Sbjct: 785 LINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDG 823



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 165/333 (49%), Gaps = 28/333 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+Q +  T+ S + G+C+ G  E+A  +   M + G+ P  V+Y TL+D     G    A
Sbjct: 424 GIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRA 483

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +  ++++ +G   +   +N +I+      KM+EA++    M E G  PD +TY  LI+G
Sbjct: 484 LALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDG 543

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ GN ++AF + ++M  + I P++  Y SLI  L K  +  E   L      KG+ P+
Sbjct: 544 YCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPN 603

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +  LI G C  G +++AF+   +M      P+ +  + ++    R G+++EA  LL 
Sbjct: 604 VVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQ 663

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M    +  DH  F+                            P  + YN  I GLCK+ 
Sbjct: 664 KMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSG 723

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           + D A+++   ++ +G +PD+ TY +LI G ++
Sbjct: 724 KVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSA 756



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 166/341 (48%), Gaps = 29/341 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD +T    V+  CK+G +  A   +++M   G     VTYN+LIDG  + G++E A
Sbjct: 213 GIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERA 272

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILIN 123
                 M ++GI+    T  LLI     + K+ EA+ +L+EM   +G+V D   Y +LI+
Sbjct: 273 EMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLID 332

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYCR      A  L DEM++ G++  +    +LI    K  ++ EA++L    +   + P
Sbjct: 333 GYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEP 392

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +   ++ L+DG C  G + +A S+  EM R+ +  + VT+N+L+ G CR G  E+A  + 
Sbjct: 393 ESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVW 452

Query: 244 DQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKN 275
             M +RG+ PD +S+                              +   +N +I G CK 
Sbjct: 453 HLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKM 512

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           ++   AEE    M   G  PD  TY +LI+G   +    E+
Sbjct: 513 EKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEA 553



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 174/378 (46%), Gaps = 81/378 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE---------------------- 38
           MK  G +PD  TY + + G CK G +EEA ++ E+M++                      
Sbjct: 525 MKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKK 584

Query: 39  -------------NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                         GL P  VTY TLI G+C++G L+ AF+   +M+++G  P     + 
Sbjct: 585 TREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSK 644

Query: 86  LIHEL----------LMERKMVEAD-------------------------DMLKEMGEKG 110
           ++  L          ++ +KMV  D                         D L E  +  
Sbjct: 645 IVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSF 704

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
            +P+S+ YNI I G C+ G    A  +   ++ +G  P   TY +LI   S    + +A 
Sbjct: 705 SLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAF 764

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            L +  L +G+ P+I+ +NALI+G C +GN++RA  L  ++    + P+ ++YN L+ G 
Sbjct: 765 SLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGY 824

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C+ G   EA  L ++M + GI       +P+ +TY+ALI G CK  +   A  LL EM  
Sbjct: 825 CKNGNTREALDLRNKMLKEGI-------SPSLITYSALIYGFCKQGDMGKATNLLDEM-- 875

Query: 291 KGITPDDNT--YFSLIEG 306
           + +  D N   +  L+EG
Sbjct: 876 RELFADQNIAKFVKLVEG 893



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 159/315 (50%), Gaps = 10/315 (3%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +S G+  D Y YG  + G C+  ++++A R+ ++M   GL       N LI+GYC  G +
Sbjct: 316 RSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQV 375

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A      MV   + P + +Y+ L+     E  + +A  +  EM   GI  + +T+N L
Sbjct: 376 SEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSL 435

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           + G CR G  + A  +   M+ +G+ P  ++Y +L+ +L K      A  L+ + LA+G 
Sbjct: 436 LKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGY 495

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
                 FN +I+G C    +  A      M  +   PD VTY TL+ G C+ G VEEA +
Sbjct: 496 GRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFK 555

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           + ++M++  I        P+   YN+LI GL K+++     +LL EM  KG++P+  TY 
Sbjct: 556 VKEKMEKEAIL-------PSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYG 608

Query: 302 SLIEGIAS---VDKA 313
           +LI G      +DKA
Sbjct: 609 TLIAGWCDEGRLDKA 623



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 156/296 (52%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++ + +   + ++G CK G++ EA R+L +M +  L P + +Y+TL+DG+C +G 
Sbjct: 350 MLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGL 409

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  +EM++ GI     T+N L+  L       +A  +   M ++G+ PD ++Y  
Sbjct: 410 VTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCT 469

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++   + G   +A +L ++++ +G   +   + ++I    K  +MIEA++ F      G
Sbjct: 470 LLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELG 529

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V +  LIDG+C  GN+E AF + ++M++  + P    YN+L+ G  +  K  E  
Sbjct: 530 FEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVM 589

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            LL +M  +G+ P+ +       TY  LI G C     D A     +M+ KG  P+
Sbjct: 590 DLLSEMCLKGLSPNVV-------TYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPN 638



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 117/200 (58%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+S  Y   ++G+CK G++++A ++   +   G  P   TY TLI GY   GN+  AFS 
Sbjct: 707 PNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSL 766

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RDEM+K+G+ P   TYN LI+ L     +  A  +  ++  KG+ P+ I+YNILI+GYC+
Sbjct: 767 RDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCK 826

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN ++A  L ++M+ +GI P+++TY++LI+   KQ  M +A  L +         +I  
Sbjct: 827 NGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAK 886

Query: 188 FNALIDGHCTNGNIERAFSL 207
           F  L++GH   G +++   L
Sbjct: 887 FVKLVEGHVKCGEVKKIAKL 906



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 159/306 (51%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   +    +S + ++G    A  + + +   G+VP   T + +++ YC  G 
Sbjct: 174 MGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGW 233

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A  F  EM   G      TYN LI   +    M  A+ +LK MGE+GI+ + +T  +
Sbjct: 234 VNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTL 293

Query: 121 LINGYCRCGNAKKAFSLHDEMIH-KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI GYCR    ++A  +  EM   +G+      Y  LI    +  +M +A +L +  L  
Sbjct: 294 LIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNV 353

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  ++ + NALI+G+C NG +  A  LL  M    + P+  +Y+TLM G CR+G V +A
Sbjct: 354 GLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKA 413

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             + ++M R GI+ + +       T+N+L++GLC+    + A  +   M+ +G+TPD+ +
Sbjct: 414 ISVYNEMLRVGIQSNVV-------THNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVS 466

Query: 300 YFSLIE 305
           Y +L++
Sbjct: 467 YCTLLD 472



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 144/304 (47%), Gaps = 20/304 (6%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P    Y S V          E  R+ E  K     PT   ++ ++  YC KG ++ A 
Sbjct: 121 VTPSKNNYSSLVV-------WNELVRVFEDFK---FSPT--VFDMILKIYCEKGMIKNAL 168

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              D M K G +P+  + N L+  L+ + +   A  +   +   GIVPD  T +I++N Y
Sbjct: 169 HVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAY 228

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G    A     EM + G +  ++TY SLI        M  A+ + +    +G+L + 
Sbjct: 229 CKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNK 288

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           V    LI G+C    +E A  +L+EM+R + +  DE  Y  L+ G CR  K+++A RL D
Sbjct: 289 VTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRD 348

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G++ +           NALI G CKN +   AE LL  MV   + P+  +Y +L+
Sbjct: 349 EMLNVGLRMN-------LFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLM 401

Query: 305 EGIA 308
           +G  
Sbjct: 402 DGFC 405



 Score = 38.1 bits (87), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   TY + + G CK+G + +A+ +L++M+E         +  L++G+   G 
Sbjct: 840 MLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVEGHVKCGE 899

Query: 61  LE 62
           ++
Sbjct: 900 VK 901


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GV+PD  TYG+ + G+C    +++A  +L +M E+G+ P  V Y+ L+ GYC  G 
Sbjct: 139 MQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGR 198

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E      +EM  +GI P    Y  LI  L  E K+ +A  ++ +M E+G+ P+ +TYN+
Sbjct: 199 WECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNV 258

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C+ G+ K+A SL + M+ KG+    +TY +LI  LS    M EA  L E  +   
Sbjct: 259 LINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGE 318

Query: 181 ML--PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            +  P++V FN++I G C  G + +AF +   M       + VT+N L+ G  R  KV++
Sbjct: 319 TMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKK 378

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L+D+M   G++PD  SF     TY+ LI G CK  + D AE LL +M   GI P+  
Sbjct: 379 AMELMDEMASSGLEPD--SF-----TYSILINGFCKMWQVDRAESLLSKMRRDGIEPELV 431

Query: 299 TYFSLIEGI 307
            Y  L+  +
Sbjct: 432 HYIPLLAAL 440



 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 181/311 (58%), Gaps = 10/311 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD   Y   +  +C+EG++++A++++++M E GL P  VTYN LI+  C +G+
Sbjct: 209 MSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGS 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSITY 118
           ++ A S R+ M+++G+   A TYN LI  L    +M EA  +L+EM  GE  + P+ +T+
Sbjct: 269 VKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTF 328

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +I+G C+ G  ++AF + D M   G    ++T+  LI  L + +++ +A +L +   +
Sbjct: 329 NSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMAS 388

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+ PD   ++ LI+G C    ++RA SLL +M R  + P+ V Y  L+   C QG +E+
Sbjct: 389 SGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQ 448

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR   D+M  +  K D ++       Y+ +I G C+ ++   AEE L+ M+ +G+ PD  
Sbjct: 449 ARNFFDEM-HKNCKLDVVA-------YSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSV 500

Query: 299 TYFSLIEGIAS 309
           TY  LI   A+
Sbjct: 501 TYSMLINMFAN 511



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 163/312 (52%), Gaps = 12/312 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P + +Y + +  +C E R  +A  +L  M+ +G+ P  VTY TLI G C+  +++ A  
Sbjct: 110 RPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVE 169

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EM + GI P    Y+ L+       +      + +EM  +GI PD + Y  LI+  C
Sbjct: 170 LLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLC 229

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G  KKA  + D+M+ +G++P ++TY  LI  + K+  + EA  L  N L KG+  D V
Sbjct: 230 REGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAV 289

Query: 187 MFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +N LI G      ++ A  LL+EM      V P+ VT+N+++HG C+ G++ +A ++ D
Sbjct: 290 TYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRD 349

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M   G   + +       T+N LI GL +  +   A EL+ EM S G+ PD  TY  LI
Sbjct: 350 MMAENGCACNLV-------TFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILI 402

Query: 305 EGIA---SVDKA 313
            G      VD+A
Sbjct: 403 NGFCKMWQVDRA 414



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 156/298 (52%), Gaps = 10/298 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M  +GV  D+ TY + ++G+     ++EA  +LE+M   E  + P  VT+N++I G C  
Sbjct: 279 MLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKT 338

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +  AF  RD M + G      T+NLLI  LL   K+ +A +++ EM   G+ PDS TY
Sbjct: 339 GRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTY 398

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +ILING+C+     +A SL  +M   GI+P ++ Y  L+  L +Q  M +A   F+  + 
Sbjct: 399 SILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDE-MH 457

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           K    D+V ++ +I G C   + + A   LK M    + PD VTY+ L++     G +  
Sbjct: 458 KNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGA 517

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           A R+L QM   G  PD   F       ++LI+G     + +   EL+REM +K I  D
Sbjct: 518 AERVLKQMTASGFVPDVAVF-------DSLIKGYGAKGDTEKVLELIREMTAKDIALD 568



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 157/314 (50%), Gaps = 27/314 (8%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPT---------------AVTYNTLIDGYCNKGN 60
           F++ + + GR E ++R+   ++   LVP                AV+YNT++   C +G 
Sbjct: 37  FLAVLLRRGRAEASARLNRLLR---LVPLPESPALLSSLPSVRDAVSYNTVLAALCRQGG 93

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  F   ++     PTA +Y  L+  L  ER+  +A  +L++M   G+ PD +TY  
Sbjct: 94  CLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGT 153

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C   +  KA  L  EM   GI+P ++ Y+ L+    K  R     ++FE    +G
Sbjct: 154 LIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRG 213

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+VM+  LID  C  G +++A  ++ +M    + P+ VTYN L++  C++G V+EA 
Sbjct: 214 IEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAM 273

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV--SKGITPDDN 298
            L + M  +G+  D +       TYN LI GL    E D A  LL EM+     + P+  
Sbjct: 274 SLRNNMLEKGVALDAV-------TYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVV 326

Query: 299 TYFSLIEGIASVDK 312
           T+ S+I G+    +
Sbjct: 327 TFNSVIHGLCKTGR 340



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 34/255 (13%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+P+  T+ S + G+CK GR+ +A ++ + M ENG     VT+N LI G      ++ A 
Sbjct: 321 VEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAM 380

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP------------ 113
              DEM   G+ P + TY++LI+      ++  A+ +L +M   GI P            
Sbjct: 381 ELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAAL 440

Query: 114 ----------------------DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
                                 D + Y+ +I+G CR  + K A      M+ +G+ P  +
Sbjct: 441 CEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSV 500

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY+ LI + +    +  A+++ +   A G +PD+ +F++LI G+   G+ E+   L++EM
Sbjct: 501 TYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREM 560

Query: 212 DRMKVHPDEVTYNTL 226
               +  D    +T+
Sbjct: 561 TAKDIALDSKIISTI 575


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  197 bits (500), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 167/311 (53%), Gaps = 7/311 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV    YT    ++G+CK+G++  A  +L+ +   GLVPT V YNTLI+GYC  G LE A
Sbjct: 335 GVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGA 394

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           FS   +M  + I P   TYN LI+ L    ++  A D+L EM + G+ P   T+N LI+ 
Sbjct: 395 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 454

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y R G  +K F +  EM   G++P +++Y S++    K  ++ EA  + ++   K +LP+
Sbjct: 455 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 514

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             ++NA+ID +  +G  ++AF L+++M    + P  VTYN L+ G C Q ++ EA  +++
Sbjct: 515 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 574

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +    + PD +S       YN LI   C     D A +L + M   GI     TY  LI
Sbjct: 575 SLSNHRLIPDAVS-------YNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 627

Query: 305 EGIASVDKAAE 315
            G+    +  E
Sbjct: 628 SGLGGAGRLNE 638



 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 174/327 (53%), Gaps = 28/327 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++++Y   ++GM + GR  +A  + ++M E  ++P  +TYNT+IDG+   G+LE  F  
Sbjct: 198 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 257

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RD+MV  G+ P A TYN+L+  L    +M E   +L EM  + +VPD  TY+IL +G  R
Sbjct: 258 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 317

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G++K   SL  + +  G+     T + L+  L K  ++  A+++ ++ +  G++P  V+
Sbjct: 318 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 377

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI+G+C  G +E AFS   +M    + PD +TYN L++G C+  ++  A+ LL +M+
Sbjct: 378 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 437

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
             G+ P   +FN                            P  ++Y +++   CKN +  
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 497

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG 306
            A  +L +M  K + P+   Y ++I+ 
Sbjct: 498 EAVAILDDMFHKDVLPNAQVYNAIIDA 524



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P++ TY   +SG+C+ GR+ E S +L++M    +VP   TY+ L DG    G+
Sbjct: 261 MVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGD 320

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   S   + +K G+     T ++L++ L  + K+  A+++L+ +   G+VP  + YN 
Sbjct: 321 SKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNT 380

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G  + AFS   +M  + I+P  +TY +LI  L K  R+  A  L       G
Sbjct: 381 LINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNG 440

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  FN LID +   G +E+ F +L EM    + P+ V+Y ++++  C+ GK+ EA 
Sbjct: 441 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 500

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LD M  + + P+   +N                            P+ +TYN LI+GL
Sbjct: 501 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 560

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
           C   +   AEE++  + +  + PD  +Y +LI       ++DKA
Sbjct: 561 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKA 604



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 158/297 (53%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSR ++PD  TY + ++G+CK  R+  A  +L +M++NG+ PT  T+NTLID Y   G 
Sbjct: 401 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 460

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE  F    EM + G+ P   +Y  +++      K+ EA  +L +M  K ++P++  YN 
Sbjct: 461 LEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 520

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ Y   G   +AF L ++M   GI P+++TY  LI  L  Q+++ EA+++  +     
Sbjct: 521 IIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR 580

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V +N LI   C  GNI++A  L + M +  +     TY+ L+ G    G++ E  
Sbjct: 581 LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEME 640

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            L  +M +  +        P+   +N +++   K      AE+L +EM+ K    DD
Sbjct: 641 YLYQKMMQNNVV-------PSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNNHDD 690



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 146/312 (46%), Gaps = 41/312 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +PD++ +   V      G L EA  ML +M  +G  P                 
Sbjct: 155 LASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP----------------- 197

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                            P A +YN++I  +    +  +A ++  EM E+ ++P+ ITYN 
Sbjct: 198 -----------------PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNT 240

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G+ +  F L D+M+  G++P  +TY  L+  L +  RM E   L +   ++ 
Sbjct: 241 MIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQK 300

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD   ++ L DG   NG+ +   SL  +  +  V   + T + L++G C+ GKV  A 
Sbjct: 301 MVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAE 360

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  +   G+ P       TR+ YN LI G C+  E + A     +M S+ I PD  TY
Sbjct: 361 EVLQSLVNAGLVP-------TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITY 413

Query: 301 FSLIEGIASVDK 312
            +LI G+   ++
Sbjct: 414 NALINGLCKAER 425


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 171/314 (54%), Gaps = 11/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   D  +YG+ + G+CK G    A  +L+++  N + P  V YNT+ID  C    +  A
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EMV +GI P   TY+ LI    +  K+ +A D+  +M  + I PD  T+NIL+N 
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGML 182
           +C+ G  K+  ++ D M+ +GI+P  +TY SL+  + L K+    +A  +F      G+ 
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVN--KAKSIFNTMAQGGVN 362

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PDI  ++ +I+G C     + A +L KEM R  + PD VTY++L+ G  + G++  A +L
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL 422

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +DQM  RG+ P+         TYN+++  LCK  + D A  LL +   KG  PD +TY  
Sbjct: 423 VDQMHDRGVPPN-------ICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSI 475

Query: 303 LIEGIASVDKAAES 316
           LI+G+    K  ++
Sbjct: 476 LIKGLCQSGKLEDA 489



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 170/321 (52%), Gaps = 28/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ PD  TY + +SG C  G+L++A  +  +M    + P   T+N L++ +C  G 
Sbjct: 251 MVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGK 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++   +  D M+KQGI P   TYN L+    + +++ +A  +   M + G+ PD  +Y+I
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     +A +L  EM  K I P ++TY+SLI  LSK  R+  A QL +    +G
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I  +N+++D  C    +++A +LL +       PD  TY+ L+ G C+ GK+E+AR
Sbjct: 431 VPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDAR 490

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           ++ + +  +G   D  ++                             P   TY  +I  L
Sbjct: 491 KVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSL 550

Query: 273 CKNQEGDLAEELLREMVSKGI 293
            K  E D+AE+LLREM+++G+
Sbjct: 551 FKKDENDMAEKLLREMIARGL 571



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 164/308 (53%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++P+       ++  C+ G +  A  +  ++ + G VP  +T+ TL  G C KG 
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQ 170

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF F D++V  G      +Y  LIH L    +   A D+L+ +    + P+ + YN 
Sbjct: 171 IQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNT 230

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF L  EM+ KGI P ++TY++LI       ++ +A  LF   + + 
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILEN 290

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN L++  C +G ++   ++   M +  + P+ VTYN+LM G C   +V +A+
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + M + G+ PD  S       Y+ +I G CK ++ D A  L +EM  K I PD  TY
Sbjct: 351 SIFNTMAQGGVNPDIQS-------YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTY 403

Query: 301 FSLIEGIA 308
            SLI+G++
Sbjct: 404 SSLIDGLS 411



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 159/315 (50%), Gaps = 7/315 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   P ++ +   +  + K         + ++M+  G+ P  V  N LI+ +C  G +  
Sbjct: 79  RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPF 138

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AFS   +++K G +P   T+  L   L ++ ++ +A     ++   G   D I+Y  LI+
Sbjct: 139 AFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G  + A  L   +    +QP ++ Y ++I  + K   + EA  LF   ++KG+ P
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISP 258

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V ++ALI G C  G ++ A  L  +M    + PD  T+N L++  C+ GK++E + + 
Sbjct: 259 DVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M ++GIKP+ +       TYN+L+ G C  +E + A+ +   M   G+ PD  +Y  +
Sbjct: 319 DMMMKQGIKPNFV-------TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 304 IEGIASVDKAAESSN 318
           I G   + K  E+ N
Sbjct: 372 INGFCKIKKFDEAMN 386



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 35/294 (11%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PD YT+   V+  CK+G+++E   + + M + G+ P  VTYN+L+DGYC    +  A 
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S  + M + G+ P   +Y+++I+     +K  EA ++ KEM  K I+PD +TY+ LI+G 
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGL 410

Query: 126 CRCGNAKKAFSLHDEM---------------------IH--------------KGIQPTM 150
            + G    A  L D+M                      H              KG QP +
Sbjct: 411 SKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDI 470

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            TY+ LI  L +  ++ +A ++FE+ L KG   D+  +  +I G C  G    A +LL +
Sbjct: 471 STYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSK 530

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           M+     PD  TY  ++    ++ + + A +LL +M  RG+  +      TRL 
Sbjct: 531 MEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLNFYDLYLTRLA 584


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 179/348 (51%), Gaps = 30/348 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   ++  Y + ++G+CK+  +E A ++LE+M   G  P  +TYNT++ G C  G 
Sbjct: 71  MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGK 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK--EMGEKGIVPDSITY 118
           +  A  F D M  +G  P    YN L+  L  E K+ EA  + K  +M ++ + PD ITY
Sbjct: 131 VSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITY 190

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N LI+G+CR     +A  L  ++I KG  P  +TY S++  L++++ M EA+++F+  + 
Sbjct: 191 NTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVD 250

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G  P+   ++ ++ GHC  GN+ R   L +EM   +  PD +  N ++   C+  KV++
Sbjct: 251 SGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDD 310

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           A ++L++M + G  PD +++N                            P  ++Y+ ++ 
Sbjct: 311 AHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLN 370

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           GLCK  +   A  L   M+ + + PD  T+  L++G+    K  E+ +
Sbjct: 371 GLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKD 418



 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 172/318 (54%), Gaps = 9/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLE--QMKENGLVPTAVTYNTLIDGYCNK 58
           M SRG  PD   Y   +  + KEG++ EA  + +   M +  + P  +TYNTLIDG+C  
Sbjct: 141 MPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRV 200

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
              + A     +++ +G MP   TYN ++  L  +  M EA++M K+M + G  P+  TY
Sbjct: 201 EKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATY 260

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +I+++G+CR GN  +   L++EM  K   P +L   ++I +L K  ++ +A ++ E    
Sbjct: 261 SIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSK 320

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G +PD+V +N L+DG C    +++A  L   M      PD V+Y+ +++G C+  KV +
Sbjct: 321 IGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHD 380

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR L D+M  R + PD ++F       N L+ GLCK  + D A++LL  M    + PD  
Sbjct: 381 ARVLFDRMIERKLVPDVVTF-------NILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGV 433

Query: 299 TYFSLIEGIASVDKAAES 316
           T  +L+ G+    +  E+
Sbjct: 434 TCTTLMHGLCRDKRTDEA 451



 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 176/320 (55%), Gaps = 16/320 (5%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G  PD+ TY S + G+ ++  ++EA  M ++M ++G  P   TY+ ++ G+C  GN+ 
Sbjct: 215 AKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMA 274

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                 +EM ++   P     N +I  L   +K+ +A  +L+EM + G VPD +TYNIL+
Sbjct: 275 RCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILL 334

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G C+     KA  L   M+  G  P +++Y+ ++  L K N++ +A  LF+  + + ++
Sbjct: 335 DGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLV 394

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+V FN L+DG C  G ++ A  LL  M    V PD VT  TLMHG CR  + +EA RL
Sbjct: 395 PDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRL 454

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL--REMV-SKG-ITPDDN 298
              M  +G   D        L +N ++ GLC+  EG LA+ LL  + MV S G  +PD  
Sbjct: 455 FQYMVEKGTVAD-------VLPHNIVLAGLCR--EGKLAQALLFFKSMVKSDGEFSPDVV 505

Query: 299 TYFSLIEGI---ASVDKAAE 315
           TY +L+  +     VD+A +
Sbjct: 506 TYTTLVNALIEAGRVDQAVD 525



 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 175/348 (50%), Gaps = 33/348 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +PD  TY + +SG+CK G++ EA  M+E+M E G+ P   TY  ++D  C  G 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M+++G       YN LI+ L  +  +  A  +L+EM  KG  PD+ITYN 
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE--NFLA 178
           +++G CR G   +A    D M  +G  P ++ Y  L+  L K+ ++ EA  LF+  +   
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           + + PD++ +N LIDG C     + A  L K++      PD VTYN+++ G  R+  ++E
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 239 ARRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQ 270
           A  +  +M   G  P+  +                            F+P  L  NA+I 
Sbjct: 241 AEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
            LCK ++ D A ++L EM   G  PD  TY  L++G+     VDKA E
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHE 348



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 9/298 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   PD     + +  +CK  ++++A ++LE+M + G VP  VTYN L+DG C    
Sbjct: 283 MTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNL 342

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV  G  P   +Y+++++ L    K+ +A  +   M E+ +VPD +T+NI
Sbjct: 343 VDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNI 402

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G   +A  L D M    + P  +T T+L+  L +  R  EA +LF+  + KG
Sbjct: 403 LMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKG 462

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM--KVHPDEVTYNTLMHGRCRQGKVEE 238
            + D++  N ++ G C  G + +A    K M +   +  PD VTY TL++     G+V++
Sbjct: 463 TVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQ 522

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           A     QM   G  PD+++       YN L+ GL K      A+ L + M  KG   D
Sbjct: 523 AVDYFQQMTGSGCAPDYVA-------YNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 171/336 (50%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  TY   +   CK    ++A ++L++M++ G  P  VTYN +++G C +G 
Sbjct: 178 MLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGR 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F   +   G  P   +YN+++  L    +  +A+ ++ EM  KG  P+ +T+N+
Sbjct: 238 VDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNM 297

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR G  + A  + D++   G  P  L+Y  ++    KQ +M  A    E  ++ G
Sbjct: 298 LISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSG 357

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N L+   C  G ++ A  LL ++      P  ++YNT++ G  + GK EEA 
Sbjct: 358 CYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEAL 417

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL++M  +G++PD I+++                            P  + YNA++ GL
Sbjct: 418 ELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGL 477

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK +    A +L   MVS G  P+++TY  LIEG+A
Sbjct: 478 CKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLA 513



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PD+YTY + + G+C  GR + A  +L+ M   G VP  VTY  L++  C +   + A 
Sbjct: 148 MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAV 207

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM  +G  P   TYN++++ +  E ++ +A + LK +   G  P++++YNI++ G 
Sbjct: 208 KLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGL 267

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C     + A  L  EM  KG  P ++T+  LI  L ++  +  A ++ +     G  P+ 
Sbjct: 268 CTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNS 327

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N ++   C    ++RA + ++ M     +PD V+YNTL+   CR G+V+ A  LL Q
Sbjct: 328 LSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQ 387

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +K +G  P  IS       YN +I GL K  + + A ELL EMV+KG+ PD  TY ++  
Sbjct: 388 LKDKGCTPVLIS-------YNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISS 440

Query: 306 GI 307
           G+
Sbjct: 441 GL 442



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 162/310 (52%), Gaps = 10/310 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD  +Y + V+G C  G+L+ A R++  M    + P   TYNTLI G C +G  + A +
Sbjct: 117 EPDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTDNALA 173

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D+M+++G +P   TY +L+          +A  +L EM +KG  PD +TYN+++NG C
Sbjct: 174 VLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGIC 233

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G    A      +   G +P  ++Y  ++  L    R  +A++L      KG  P++V
Sbjct: 234 QEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVV 293

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN LI   C  G +E A  +L ++ +    P+ ++YN ++H  C+Q K++ A   ++ M
Sbjct: 294 TFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 353

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD +S       YN L+  LC+  E D A ELL ++  KG TP   +Y ++I+G
Sbjct: 354 VSSGCYPDIVS-------YNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 406

Query: 307 IASVDKAAES 316
           +    K  E+
Sbjct: 407 LTKAGKTEEA 416



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 146/294 (49%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +P++ +Y   + G+C   R E+A +++ +M   G  P  VT+N LI   C +G 
Sbjct: 248 LPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGL 307

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D++ K G  P + +YN ++H    ++KM  A   ++ M   G  PD ++YN 
Sbjct: 308 VEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNT 367

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   CR G    A  L  ++  KG  P +++Y ++I  L+K  +  EA +L    + KG
Sbjct: 368 LLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKG 427

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ +  G C  G IE A     ++  M + P+ V YN ++ G C++     A 
Sbjct: 428 LQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAI 487

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            L   M   G  P+         TY  LI+GL        A E++ E+ S+G+ 
Sbjct: 488 DLFTYMVSNGCMPNES-------TYTILIEGLAYEGLVKEAREMMAELCSRGVV 534



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 112/256 (43%), Gaps = 53/256 (20%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTAS-TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           +G+LE A    + M   G+ P+A+     LI +L    +  EA  +L         PD +
Sbjct: 69  RGDLEEAIRLVESMA--GLEPSAAGPCAALIKKLCASGRTAEARRVLASCE-----PDVM 121

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           +YN ++ GYC  G                              L    R++ A       
Sbjct: 122 SYNAMVAGYCVTGQ-----------------------------LDNARRLVAA------- 145

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
               M PD   +N LI G C  G  + A ++L +M R    PD VTY  L+   C++   
Sbjct: 146 --MPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGY 203

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           ++A +LLD+M+ +G  PD +       TYN ++ G+C+    D A E L+ + S G  P+
Sbjct: 204 KQAVKLLDEMRDKGCAPDIV-------TYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPN 256

Query: 297 DNTYFSLIEGIASVDK 312
             +Y  +++G+ + ++
Sbjct: 257 TVSYNIVLKGLCTAER 272


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 173/311 (55%), Gaps = 13/311 (4%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD  TY + + G+C E R+ +A+ +  +M++ G  P A+TY TL+ G C  GN+ +
Sbjct: 160 RGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISI 219

Query: 64  AFSFRDEMVKQGIM------PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           A     EM+    +      P   +Y+++I  L  +R+  EA D+ +EM  +G+ P  I+
Sbjct: 220 ALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVIS 279

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI+G+C  G  ++A  L +EM+++G+QP ++T+  LI VL K+ ++IEA  L E  +
Sbjct: 280 YTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMI 339

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G++P+++ +N+LI+G C  G++  A  L   M      PD + Y  L++G C+  KVE
Sbjct: 340 QRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVE 399

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA +L + M + G +PD         TY AL+ GL +  +   A++L   M   GI  D 
Sbjct: 400 EAMKLYNGMLQVGKRPD-------VKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDL 452

Query: 298 NTYFSLIEGIA 308
             Y   + G+ 
Sbjct: 453 YIYGIFLNGLC 463



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 159/315 (50%), Gaps = 13/315 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P   ++   +SG+ K     +   +  QM+ +G+ P   T N L++  CN   +    + 
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++++G +P   TY  LI  L ME ++ +A  +   M + G  P++ITY  L+ G CR
Sbjct: 154 MAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCR 213

Query: 128 CGNAKKAFSLHDEMIHKG------IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            GN   A  LH EM++         +P +++Y+ +I  L K  R  EA  LFE    +GM
Sbjct: 214 TGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGM 273

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P ++ + +LI G C  G  E A  L  EM    V P+ VT+N L+   C++GKV EA+ 
Sbjct: 274 TPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKD 333

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL+ M +RGI P+        LTYN+LI+G C   + + A EL   M SKG  PD   Y 
Sbjct: 334 LLEVMIQRGIVPN-------LLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYT 386

Query: 302 SLIEGIASVDKAAES 316
            LI G     K  E+
Sbjct: 387 VLINGYCKTSKVEEA 401



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 166/336 (49%), Gaps = 42/336 (12%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P   +Y   +  +CK+ R +EA  + E+MK  G+ PT ++Y +LI G+C  G  E A  
Sbjct: 239 KPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKR 298

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +EMV QG+ P   T+N+LI  L  E K++EA D+L+ M ++GIVP+ +TYN LI G+C
Sbjct: 299 LFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFC 358

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G+   A  L   M  KG +P ++ YT LI    K +++ EA +L+   L  G  PD+ 
Sbjct: 359 LVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVK 418

Query: 187 MFNAL-----------------------------------IDGHCTNGNIERAFSLLKEM 211
            + AL                                   ++G C NG +  A  L  ++
Sbjct: 419 TYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKL 478

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
               +  D   +N L+ G C+ GK+E A  L +++ +  ++PD +       TYN +I  
Sbjct: 479 KSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVV-------TYNIMIHE 531

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            C+  +   A  L ++M   G TPD  TY +LI G 
Sbjct: 532 FCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGF 567



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 167/333 (50%), Gaps = 42/333 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ P   +Y S + G C  G+ EEA R+  +M   G+ P  VT+N LID  C +G 
Sbjct: 268 MKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M+++GI+P   TYN LI    +   +  A ++   M  KG  PD I Y +
Sbjct: 328 VIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTV 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL------------------------ 156
           LINGYC+    ++A  L++ M+  G +P + TY +L                        
Sbjct: 388 LINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYG 447

Query: 157 ---------IFV--LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                    IF+  L K   + EA +LF    +  +  DI  FN LIDG C  G +E A+
Sbjct: 448 IPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAW 507

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L +++ + ++ PD VTYN ++H  CR G+V +A  L  +M++ G  PD       ++TY
Sbjct: 508 ELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPD-------KITY 560

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
             LI+G  ++++ +   ELL  MV + ++ D N
Sbjct: 561 ATLIRGFFESKKLEKVVELLHMMVQRDVSLDVN 593


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 113/317 (35%), Positives = 182/317 (57%), Gaps = 13/317 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+  +YG+ ++ +CK  +L EA  +   M++ G+ P    YN LIDG C+KG 
Sbjct: 485 MEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGK 544

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F  EM+K+GI     TYN LI  L M  K+ EA+D+L E+  KG+ PD  TYN 
Sbjct: 545 IEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNS 604

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY   GN ++  +L++EM   GI+PT+ TY  LI + +K     E  +L E    + 
Sbjct: 605 LISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTK-----EGIELTERLFGEM 659

Query: 181 ML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            L PD++++N ++  +  +G++E+AF+L K+M    +  D+ TYN+L+ G+ + GK+ E 
Sbjct: 660 SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEV 719

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R L+D+M  R ++P+         TYN +++G C+ ++   A    REM  KG   D   
Sbjct: 720 RSLIDEMNAREMEPEAD-------TYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCI 772

Query: 300 YFSLIEGIASVDKAAES 316
              L+ G+    ++ E+
Sbjct: 773 GNELVSGLKEEWRSKEA 789



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 180/316 (56%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   + P  + Y   + G+CK  R+ +A ++ ++M    L+P+ +TYNTLIDGYC  GN
Sbjct: 205 MKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGN 264

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E +F  R+ M    I P+  T+N L+  L     + +A+++LKEM + G VPD+ T++I
Sbjct: 265 PEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSI 324

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +GY     A+ A  +++  +  G++    T + L+  L K+ ++ +A+++    +AKG
Sbjct: 325 LFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKG 384

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V++N +IDG+C  G++  A   ++ M++  + PD + YN L+   C  G++E A 
Sbjct: 385 LVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAE 444

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + +++MK +G+       +P+  TYN LI G  +  E D   ++L+EM   G  P+  +Y
Sbjct: 445 KEVNKMKLKGV-------SPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSY 497

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +    K  E+
Sbjct: 498 GTLINCLCKGSKLLEA 513



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 166/302 (54%), Gaps = 11/302 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+ ++YT    ++ +CKEG++E+A  +L +    GLVP  V YNT+IDGYC KG+L  A
Sbjct: 349 GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGA 408

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               + M KQG+ P    YN LI       +M  A+  + +M  KG+ P   TYNILI G
Sbjct: 409 RMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGG 468

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y R     K F +  EM   G  P +++Y +LI  L K ++++EA  +  +   +G+ P 
Sbjct: 469 YGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPK 528

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           + ++N LIDG C+ G IE AF   KEM +  +  + VTYNTL+ G    GK+ EA  LL 
Sbjct: 529 VRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLL 588

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQ--GLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           ++ R+G+KPD         TYN+LI   G   N +  +A  L  EM   GI P   TY  
Sbjct: 589 EISRKGLKPD-------VFTYNSLISGYGFAGNVQRCIA--LYEEMKRSGIKPTLKTYHL 639

Query: 303 LI 304
           LI
Sbjct: 640 LI 641



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 162/317 (51%), Gaps = 15/317 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++PD   Y   +   C+ G +E A + + +MK  G+ P+  TYN LI GY  K  
Sbjct: 415 MEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYE 474

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  F    EM   G MP   +Y  LI+ L    K++EA  + ++M ++G+ P    YN+
Sbjct: 475 FDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNM 534

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + AF    EM+ KGI+  ++TY +LI  LS   ++ EA+ L      KG
Sbjct: 535 LIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N+LI G+   GN++R  +L +EM R  + P   TY+ L+   C +  +E   
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI-SLCTKEGIELTE 653

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
           RL  +M          S  P  L YN ++   C    GD+  A  L ++M+ K I  D  
Sbjct: 654 RLFGEM----------SLKPDLLVYNGVLH--CYAVHGDMEKAFNLQKQMIEKSIGLDKT 701

Query: 299 TYFSLIEGIASVDKAAE 315
           TY SLI G   V K  E
Sbjct: 702 TYNSLILGQLKVGKLCE 718



 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 171/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+  ++P   T+ + + G+ K G +E+A  +L++MK+ G VP A T++ L DGY +   
Sbjct: 275 MKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEK 334

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    +  V  G+   A T ++L++ L  E K+ +A+++L     KG+VP+ + YN 
Sbjct: 335 AEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNT 394

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYCR G+   A    + M  +G++P  L Y  LI    +   M  A++       KG
Sbjct: 395 MIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKG 454

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  +N LI G+      ++ F +LKEM+     P+ V+Y TL++  C+  K+ EA+
Sbjct: 455 VSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQ 514

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M+ RG+ P        R+ YN LI G C   + + A    +EM+ KGI  +  TY
Sbjct: 515 IVKRDMEDRGVSPK------VRI-YNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTY 567

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI+G++   K +E+ +
Sbjct: 568 NTLIDGLSMTGKLSEAED 585



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 44/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++ G+ P S +    +  + K  +      +   + E+   P+   Y   I       +
Sbjct: 135 LRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSD 194

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       + M    I P+   YN+LI  L   ++M +A+ +  EM  + ++P  ITYN 
Sbjct: 195 VGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNT 254

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN +K+F + + M    I+P+++T+ +L+  L K   + +A+ + +     G
Sbjct: 255 LIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG 314

Query: 181 MLPDIVMFNALIDGH-----------------------------------CTNGNIERAF 205
            +PD   F+ L DG+                                   C  G IE+A 
Sbjct: 315 FVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAE 374

Query: 206 SLL-KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +L +EM +  V P+EV YNT++ G CR+G +  AR  ++ M+++G+KPDH       L 
Sbjct: 375 EILGREMAKGLV-PNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDH-------LA 426

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           YN LI+  C+  E + AE+ + +M  KG++P   TY  LI G
Sbjct: 427 YNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGG 468



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 4/249 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ +  TY + + G+   G+L EA  +L ++   GL P   TYN+LI GY   GN
Sbjct: 555 MLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGN 614

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++   +  +EM + GI PT  TY+LLI   L  ++ +E  + L   GE  + PD + YN 
Sbjct: 615 VQRCIALYEEMKRSGIKPTLKTYHLLIS--LCTKEGIELTERL--FGEMSLKPDLLVYNG 670

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++ Y   G+ +KAF+L  +MI K I     TY SLI    K  ++ E   L +   A+ 
Sbjct: 671 VLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNARE 730

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M P+   +N ++ GHC   +   A+   +EM       D    N L+ G   + + +EA 
Sbjct: 731 MEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAE 790

Query: 241 RLLDQMKRR 249
            ++ +M  R
Sbjct: 791 IVISEMNGR 799



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 85  LLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           LL+  LL E KM+ EA D+   +  +GI P S +  +L++   +    +   ++   ++ 
Sbjct: 113 LLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 172

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
              +P+   Y   I    K + + +  +LF       + P + ++N LIDG C    +  
Sbjct: 173 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND 232

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  L  EM   ++ P  +TYNTL+ G C+ G  E++ ++ ++M     K DHI   P+ +
Sbjct: 233 AEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERM-----KADHI--EPSLI 285

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           T+N L++GL K    + AE +L+EM   G  PD  T+  L +G +S +KA
Sbjct: 286 TFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKA 335



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 11/184 (5%)

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
           F+L +E    GI P+  + T L+  L K  +      +F N L     P   M+   I  
Sbjct: 133 FALRNE----GIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQA 188

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
                ++ +   L   M   +++P    YN L+ G C+  ++ +A +L D+M  R + P 
Sbjct: 189 AVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPS 248

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
            I       TYN LI G CK    + + ++   M +  I P   T+ +L++G+       
Sbjct: 249 LI-------TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVE 301

Query: 315 ESSN 318
           ++ N
Sbjct: 302 DAEN 305


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 174/337 (51%), Gaps = 28/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD   Y + + G+CKEG  E A+ +L +M   GL P  V YNT++ G C+   
Sbjct: 257 MAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADR 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EM ++       T+N+L+        +    ++L++M E G +PD ITY  
Sbjct: 317 WEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTT 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G   +A  L   M   G +P  ++YT ++  L    R ++A++L    + +G
Sbjct: 377 VINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+ V FN +I+  C  G +E+A  LLK+M     +PD ++Y+T++ G  + GK EEA 
Sbjct: 437 CLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEAL 496

Query: 241 RLLDQMKRRGIKPDHISFNPTRLT----------------------------YNALIQGL 272
            LL+ M  +GI P+ I+++                                 YNA+I  L
Sbjct: 497 ELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSL 556

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           CK +E DLA + L  MVS G  P+++TY +LI+G+AS
Sbjct: 557 CKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLAS 593



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 138/253 (54%), Gaps = 1/253 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY + ++G CKEG ++EA  +L+ M   G  P  ++Y  ++ G C+   
Sbjct: 362 MLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTER 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M++QG +P   T+N +I+ L  +  + +A ++LK+M   G  PD I+Y+ 
Sbjct: 422 WVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYST 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L + MI+KGI P ++TY+S+ F L+++ R+ +  Q+F+N     
Sbjct: 482 VIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDAT 541

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V++NA+I   C     + A   L  M      P+E TY  L+ G   +G + EA+
Sbjct: 542 IRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQ 601

Query: 241 RLLDQM-KRRGIK 252
            LL ++  RR ++
Sbjct: 602 DLLSELCSRRAVR 614



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 166/384 (43%), Gaps = 73/384 (19%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++YTY   V G+C  GR+ +A  +L++M     VP    Y+ +I+  C  G    A 
Sbjct: 112 VPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSAL 171

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELL----------MERK-------------------- 95
              + +  +G        NL+I+ +           M RK                    
Sbjct: 172 RVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGL 231

Query: 96  ---------------MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
                          MV+  + L +M + G  PD   Y  +I+G C+ G+ + A  +   
Sbjct: 232 CAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSR 291

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M   G++P ++ Y +++  +   +R  +A++L      K    D V FN L+D  C NG 
Sbjct: 292 MPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGL 351

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN- 259
           ++R   LL++M      PD +TY T+++G C++G ++EA  LL  M   G KP+ IS+  
Sbjct: 352 VDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTI 411

Query: 260 ---------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
                                      P  +T+N +I  LCK    + A ELL++M+  G
Sbjct: 412 VLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNG 471

Query: 293 ITPDDNTYFSLIEGIASVDKAAES 316
             PD  +Y ++I+G+    K  E+
Sbjct: 472 CNPDLISYSTVIDGLGKAGKTEEA 495



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 148/285 (51%), Gaps = 11/285 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D  T+   V   C+ G ++    +LEQM E+G +P  +TY T+I+G+C +G ++ A    
Sbjct: 335 DDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLL 394

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M   G  P   +Y +++  L    + V+A++++  M ++G +P+ +T+N +IN  C+ 
Sbjct: 395 KNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKK 454

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  ++A  L  +M+  G  P +++Y+++I  L K  +  EA +L    + KG+ P+++ +
Sbjct: 455 GLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITY 514

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           +++       G I++   +   +    +  D V YN ++   C++ + + A   L  M  
Sbjct: 515 SSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVS 574

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSK 291
            G  P+         TY ALI+GL    EG L  A++LL E+ S+
Sbjct: 575 NGCMPNES-------TYTALIKGL--ASEGLLCEAQDLLSELCSR 610



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 140/337 (41%), Gaps = 58/337 (17%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + +  +C  GR  +A R L+     G     V YN ++ GYC  G +E A   R      
Sbjct: 57  ALIRSLCVAGRTADAVRALDAA---GNAAGVVDYNAMVAGYCRVGQVEAA---RRLAAAV 110

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
            + P A TY  ++  L    ++ +A  +L EM  +  VP    Y+++I   CR G    A
Sbjct: 111 PVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSA 170

Query: 135 F----SLHD---------------------------EMIHK----GIQPTMLTYTSLIFV 159
                +LH                            EM+ K    G +  +++Y +++  
Sbjct: 171 LRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKG 230

Query: 160 LSKQNR----------MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           L    R          M++  +        G  PDI M+  +IDG C  G+ E A  +L 
Sbjct: 231 LCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILS 290

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M    + P+ V YNT++ G C   + E+A  LL +M ++    D ++F       N L+
Sbjct: 291 RMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTF-------NILV 343

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              C+N   D   ELL +M+  G  PD  TY ++I G
Sbjct: 344 DFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVING 380



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 23/233 (9%)

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L +  +  +A   L   G    V D   YN ++ GYCR G  + A  L   +    
Sbjct: 58  LIRSLCVAGRTADAVRALDAAGNAAGVVD---YNAMVAGYCRVGQVEAARRLAAAV---P 111

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P   TY  ++  L  + R+ +A  + +   ++  +P   M++ +I+  C +G    A 
Sbjct: 112 VPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSAL 171

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +L+ +       D    N +++  C QG V+E   +L ++   G + D +S       Y
Sbjct: 172 RVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVS-------Y 224

Query: 266 NALIQGLCKNQEGDLAEELLREMV----------SKGITPDDNTYFSLIEGIA 308
           NA+++GLC  +     EEL+ EMV            G TPD   Y ++I+GI 
Sbjct: 225 NAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGIC 277



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            +ALI   C  G   R    ++ +D        V YN ++ G CR G+VE ARRL     
Sbjct: 55  LSALIRSLCVAG---RTADAVRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAA-- 109

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                   +   P   TY  +++GLC       A  +L EM S+   P    Y  +IE
Sbjct: 110 --------VPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIE 159


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 171/331 (51%), Gaps = 26/331 (7%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ T+ + + G+C EG++ EA  + ++M   G  P  VTY TLI+G C  GN   A
Sbjct: 126 GHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 185

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 MV++   P    YN +I  L  +R++ EA ++  EM  KGI PD  TYN LI+ 
Sbjct: 186 IRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHA 245

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     K   +L +EM+   I P ++++ +++  L K+ ++ EA  + +  + +G+ P+
Sbjct: 246 LCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPN 305

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV-------- 236
           +V + AL+DGHC    ++ A  +   M      P+ ++YNTL++G C+  ++        
Sbjct: 306 VVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTX 365

Query: 237 -----------EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
                      +EA ++ D M  +G  P+ IS       YN LI G CK Q  D A  L 
Sbjct: 366 LMDXXCCYLNMDEAVKVFDTMVCKGCMPNVIS-------YNTLINGYCKIQRIDKAMYLF 418

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            EM  + + PD  TY +LI G+  V++  ++
Sbjct: 419 GEMCRQELIPDTVTYSTLIHGLCHVERLQDA 449



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 175/337 (51%), Gaps = 30/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  TYG+ ++G+CK G    A R+L  M +    P    YNT+ID  C    
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQ 216

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   EMV +GI P   TYN LIH L  L E K V    +L EM +  I+PD +++
Sbjct: 217 VTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVAT--LLNEMVDSKIMPDVVSF 274

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++  C+ G   +A  + D+MI +G++P ++TYT+L+      + M EA ++F+  + 
Sbjct: 275 NTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC 334

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH-------------------PD 219
           KG +P+++ +N LI+G+C    I++A      MD    +                   P+
Sbjct: 335 KGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPN 394

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            ++YNTL++G C+  ++++A  L  +M R+ + PD +       TY+ LI GLC  +   
Sbjct: 395 VISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTV-------TYSTLIHGLCHVERLQ 447

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A  L  EMV+    P+  TY  L++ +      AE+
Sbjct: 448 DAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEA 484



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 161/309 (52%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K         +  QM   G+ P   T + LI+ +C+   +  AFS 
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +T+  LI  + +E K+ EA  +  +M  +G  PD +TY  LING C+
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M+ K  QP +  Y ++I  L K  ++ EA  LF   + KG+ PDI  
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI   C     +   +LL EM   K+ PD V++NT++   C++GKV EA  ++D+M 
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMI 298

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
           +RG++P+ +       TY AL+ G C   E D A ++   MV KG  P+  +Y +LI G 
Sbjct: 299 QRGVEPNVV-------TYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGY 351

Query: 307 --IASVDKA 313
             I  +DKA
Sbjct: 352 CKIQRIDKA 360



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 173/355 (48%), Gaps = 47/355 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  QP+ + Y + +  +CK+ ++ EA  +  +M   G+ P   TYN+LI   CN   
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 251

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   +  +EMV   IMP   ++N ++  L  E K+ EA D++ +M ++G+ P+ +TY  
Sbjct: 252 WKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTA 311

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR--------------- 165
           L++G+C      +A  + D M+ KG  P +++Y +LI    K  R               
Sbjct: 312 LMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXC 371

Query: 166 ----MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
               M EA ++F+  + KG +P+++ +N LI+G+C    I++A  L  EM R ++ PD V
Sbjct: 372 CYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTV 431

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF----------------------- 258
           TY+TL+HG C   ++++A  L  +M      P+ +++                       
Sbjct: 432 TYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAI 491

Query: 259 -----NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                +P     N  I G+C+  E + A +L   + SKG+ PD  TY  +I G+ 
Sbjct: 492 EGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLC 546



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 163/325 (50%), Gaps = 26/325 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    + PD  ++ + V  +CKEG++ EA  ++++M + G+ P  VTY  L+DG+C    
Sbjct: 262 MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSE 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI--------------HELLMER-----KMVEADD 101
           ++ A    D MV +G MP   +YN LI              +  LM+       M EA  
Sbjct: 322 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVK 381

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +   M  KG +P+ I+YN LINGYC+     KA  L  EM  + + P  +TY++LI  L 
Sbjct: 382 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 441

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
              R+ +A  LF   +A   +P++V +  L+D  C N  +  A +LLK ++   + PD  
Sbjct: 442 HVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQ 501

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
             N  + G CR G++E AR L   +  +G++PD         TY+ +I GLC+    D A
Sbjct: 502 VNNIAIDGMCRAGELEAARDLFSNLSSKGLQPD-------VWTYSIMINGLCRRGLLDEA 554

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
            +L REM   G T +   Y ++  G
Sbjct: 555 SKLFREMDENGCTLNGCIYNTITRG 579



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 7/255 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A S  + M++    P+   +N L+  +   +       +  +M   GI P+  T +ILIN
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILIN 104

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +C       AFS+  +++  G QP   T+T+LI  +  + ++ EA  LF+  + +G  P
Sbjct: 105 SFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRP 164

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +  LI+G C  GN   A  LL  M +    P+   YNT++   C+  +V EA  L 
Sbjct: 165 DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLF 224

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M  +GI PD         TYN+LI  LC   E      LL EMV   I PD  ++ ++
Sbjct: 225 SEMVTKGISPD-------IFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 304 IEGIASVDKAAESSN 318
           ++ +    K  E+ +
Sbjct: 278 VDALCKEGKVTEAHD 292



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 19/273 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLE-------------------EASRMLEQMKENGL 41
           M  +G  P+  +Y + ++G CK  R++                   EA ++ + M   G 
Sbjct: 332 MVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGC 391

Query: 42  VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           +P  ++YNTLI+GYC    ++ A     EM +Q ++P   TY+ LIH L    ++ +A  
Sbjct: 392 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 451

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +  EM     +P+ +TY IL++  C+     +A +L   +    + P +      I  + 
Sbjct: 452 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC 511

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           +   +  A  LF N  +KG+ PD+  ++ +I+G C  G ++ A  L +EMD      +  
Sbjct: 512 RAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGC 571

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            YNT+  G  R  +   A +LL +M  RG   D
Sbjct: 572 IYNTITRGFLRNNETSRAIQLLQEMVARGFSAD 604



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 35/203 (17%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTY------------------- 48
           PD+ TY + + G+C   RL++A  +  +M     +P  VTY                   
Sbjct: 428 PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMAL 487

Query: 49  ----------------NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
                           N  IDG C  G LE A      +  +G+ P   TY+++I+ L  
Sbjct: 488 LKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCR 547

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
              + EA  + +EM E G   +   YN +  G+ R     +A  L  EM+ +G      T
Sbjct: 548 RGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADAST 607

Query: 153 YTSLIFVLSKQNRMIEADQLFEN 175
            T  + +LS         Q+  N
Sbjct: 608 MTLFVKMLSDDGLDQSLKQILRN 630



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G+QPD +TY   ++G+C+ G L+EAS++  +M ENG       YNT+  G+     
Sbjct: 526 LSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 585

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
              A     EMV +G    AST  L +  L
Sbjct: 586 TSRAIQLLQEMVARGFSADASTMTLFVKML 615



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   + PD       + GMC+ G LE A  +   +   GL P   TY+ +I+G C +G 
Sbjct: 491 IEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGL 550

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM + G       YN +    L   +   A  +L+EM  +G   D+ T  +
Sbjct: 551 LDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTL 610

Query: 121 LI 122
            +
Sbjct: 611 FV 612


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 176/338 (52%), Gaps = 32/338 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  TYG+ ++G+CK G    A R+L  M +    P    YNT+ID  C    
Sbjct: 157 MIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQ 216

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   EMV +GI P   TYN LIH L  L E K V    +L EM +  I+PD +++
Sbjct: 217 VTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVAT--LLNEMVDSKIMPDVVSF 274

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++  C+ G   +A  + D+MI +G++P ++TYT+L+      + M EA ++F+  + 
Sbjct: 275 NTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVC 334

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG +P+++ +N LI+G+C    I++A  L  EM R ++ PD VTY+TL+HG C   ++++
Sbjct: 335 KGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQD 394

Query: 239 ARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQ 270
           A  L  +M      P+ +++                            +P     N  I 
Sbjct: 395 AIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAID 454

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           G+C+  E + A +L   + SKG+ PD  TY  +I G+ 
Sbjct: 455 GMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLC 492



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 166/312 (53%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ T+ + + G+  EG++ EA  + ++M   G  P  VTY TLI+G C  GN   A
Sbjct: 126 GHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 185

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 MV++   P    YN +I  L  +R++ EA ++  EM  KGI PD  TYN LI+ 
Sbjct: 186 IRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHA 245

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     K   +L +EM+   I P ++++ +++  L K+ ++ EA  + +  + +G+ P+
Sbjct: 246 LCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPN 305

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + AL+DGHC    ++ A  +   M      P+ ++YNTL++G C+  ++++A  L  
Sbjct: 306 VVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFG 365

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R+ + PD +       TY+ LI GLC  +    A  L  EMV+    P+  TY  L+
Sbjct: 366 EMCRQELIPDTV-------TYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILL 418

Query: 305 EGIASVDKAAES 316
           + +      AE+
Sbjct: 419 DYLCKNRYLAEA 430



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 166/337 (49%), Gaps = 28/337 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K         +  QM   G+ P   T + LI+ +C+   +  AFS 
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +T+  LI  + +E K+ EA  +  +M  +G  PD +TY  LING C+
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M+ K  QP +  Y ++I  L K  ++ EA  LF   + KG+ PDI  
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI   C     +   +LL EM   K+ PD V++NT++   C++GKV EA  ++D+M 
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMI 298

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           +RG++P+ +++                             P  ++YN LI G CK Q  D
Sbjct: 299 QRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRID 358

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A  L  EM  + + PD  TY +LI G+  V++  ++
Sbjct: 359 KAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDA 395



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 162/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ PD +TY S +  +C     +  + +L +M ++ ++P  V++NT++D  C +G 
Sbjct: 227 MVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGK 286

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+++G+ P   TY  L+    +  +M EA  +   M  KG +P+ I+YN 
Sbjct: 287 VTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNT 346

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L  EM  + + P  +TY++LI  L    R+ +A  LF   +A  
Sbjct: 347 LINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 406

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++V +  L+D  C N  +  A +LLK ++   + PD    N  + G CR G++E AR
Sbjct: 407 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAAR 466

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G++PD         TY+ +I GLC+    D A +L REM   G T +   Y
Sbjct: 467 DLFSNLSSKGLQPD-------VWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIY 519

Query: 301 FSLIEG 306
            ++  G
Sbjct: 520 NTITRG 525



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 127/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+P+  TY + + G C    ++EA ++ + M   G +P  ++YNTLI+GYC    
Sbjct: 297 MIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQR 356

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM +Q ++P   TY+ LIH L    ++ +A  +  EM     +P+ +TY I
Sbjct: 357 IDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRI 416

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+     +A +L   +    + P +      I  + +   +  A  LF N  +KG
Sbjct: 417 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 476

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  ++ +I+G C  G ++ A  L +EMD      +   YNT+  G  R  +   A 
Sbjct: 477 LQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAI 536

Query: 241 RLLDQMKRRGIKPD 254
           +LL +M  RG   D
Sbjct: 537 QLLQEMVARGFSAD 550



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 7/255 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A S  + M++    P+   +N L+  +   +       +  +M   GI P+  T +ILIN
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILIN 104

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +C       AFS+  +++  G QP   T+T+LI  +  + ++ EA  LF+  + +G  P
Sbjct: 105 SFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRP 164

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +  LI+G C  GN   A  LL  M +    P+   YNT++   C+  +V EA  L 
Sbjct: 165 DVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLF 224

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M  +GI PD         TYN+LI  LC   E      LL EMV   I PD  ++ ++
Sbjct: 225 SEMVTKGISPD-------IFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 304 IEGIASVDKAAESSN 318
           ++ +    K  E+ +
Sbjct: 278 VDALCKEGKVTEAHD 292



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 75/170 (44%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  TY   +  +CK   L EA  +L+ ++ + L P     N  IDG C  G LE A   
Sbjct: 409 PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDL 468

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              +  +G+ P   TY+++I+ L     + EA  + +EM E G   +   YN +  G+ R
Sbjct: 469 FSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLR 528

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
                +A  L  EM+ +G      T T  + +LS         Q+   F+
Sbjct: 529 NNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILREFV 578



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G+QPD +TY   ++G+C+ G L+EAS++  +M ENG       YNT+  G+     
Sbjct: 472 LSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 531

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
              A     EMV +G    AST  L +  L
Sbjct: 532 TSRAIQLLQEMVARGFSADASTMTLFVKML 561



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   + PD       + GMC+ G LE A  +   +   GL P   TY+ +I+G C +G 
Sbjct: 437 IEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGL 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM + G       YN +    L   +   A  +L+EM  +G   D+ T  +
Sbjct: 497 LDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTL 556

Query: 121 LI 122
            +
Sbjct: 557 FV 558


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 176/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   PD  TY   +   CK    ++A ++L++M++ G  P  VTYN +++G C +G 
Sbjct: 186 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F   +   G  P   +YN+++  L    +  +A++++ EMG+KG  P+ +T+N+
Sbjct: 246 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR G  + A  + +++   G  P  L+Y  L+    KQ +M +A    +  +++G
Sbjct: 306 LISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N L+   C +G ++ A  LL ++      P  ++YNT++ G  + GK +EA 
Sbjct: 366 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 425

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL++M  +G++PD I+++                            P  + YNA+I GL
Sbjct: 426 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 485

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK +E   A +L   M+  G  P+++TY  LIEG+A
Sbjct: 486 CKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 521



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R V+ D+YT  + + G+C  GR   A  +L++M     VP  VTY  L++  C +   + 
Sbjct: 154 RAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQ 213

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    DEM  +G  P   TYN++++ +  E ++ +A + LK +   G  P++++YNI++ 
Sbjct: 214 AMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLK 273

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C     + A  L  EM  KG  P ++T+  LI  L ++  +  A ++ E     G  P
Sbjct: 274 GLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSP 333

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + + +N L+   C    +++A + L  M     +PD V+YNTL+   CR G+V+ A  LL
Sbjct: 334 NSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 393

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            Q+K +G  P  IS       YN +I GL K  +   A ELL EMVSKG+ PD  TY ++
Sbjct: 394 HQLKDKGCAPVLIS-------YNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 446

Query: 304 IEGIASVDK 312
             G+   D+
Sbjct: 447 AAGLCREDR 455



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 7/292 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +P++ +Y   + G+C   R E+A  ++ +M + G  P  VT+N LI   C KG 
Sbjct: 256 LPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGL 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +++ K G  P + +YN L+H    ++KM +A   L  M  +G  PD ++YN 
Sbjct: 316 VEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   CR G    A  L  ++  KG  P +++Y ++I  L+K  +  EA +L    ++KG
Sbjct: 376 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ +  G C    IE A     ++  M + P+ V YN ++ G C++ +   A 
Sbjct: 436 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            L   M   G  P+         TY  LI+GL        A +LL E+ S+G
Sbjct: 496 DLFAYMIGNGCMPNES-------TYTILIEGLAYEGLIKEARDLLDELCSRG 540


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 165/291 (56%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM EA+D+  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A   + +M+ +   P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G+++ AF L + M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD+        TY  +I   CK ++   A +LL+EM  +G  P
Sbjct: 371 EMLSVGLKPDNG-------TYTMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414



 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G + +A       +E+ L     T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L + M   G+QP + TY+ LI  L K+++M EA+ LF   L K
Sbjct: 176 TLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A    K+M      PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + LLD+M+ +G+KPD       ++TY  LI G CK  + D A EL   MV + I  DD  
Sbjct: 296 QDLLDEMRMKGLKPD-------KITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    +A ++
Sbjct: 349 YTALISGLCQEGRATDA 365



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 130/222 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++ EA+ +  +M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGK 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M+ Q  +P   TYN LI+ L  +  + +A D+L EM  KG+ PD ITY  
Sbjct: 257 VDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF L + M+ + I+   + YT+LI  L ++ R  +A+++    L+ G
Sbjct: 317 LIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C   +++ A  LLKEM R    P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 173/316 (54%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P+   +   +SG+CK GR+ +A  + + M +NG+VP+ +TYN +I GY   G 
Sbjct: 279 MKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   ++ M K G  P   TYN LI+ L  ++K  EA+++L    ++G  P  +T+  
Sbjct: 339 MNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTN 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC       A  + ++M+    +  +  +  LI  L K++R+ EA +L     A G
Sbjct: 398 LINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANG 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+++ + ++IDG+C +G ++ A  +LK M+R    P+  TYN+LM+G  +  K+ +A 
Sbjct: 458 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 517

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M++ GI P+ I       TY  L+QG C   + D A  L   M   G+ PD++ Y
Sbjct: 518 ALLTKMQKDGIIPNVI-------TYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAY 570

Query: 301 FSLIEGIASVDKAAES 316
             L + +    +A E+
Sbjct: 571 AVLTDALCKAGRAEEA 586



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 171/344 (49%), Gaps = 34/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S   + D   +G  ++ + K+ RL+EA  +L ++  NGLVP  +TY ++IDGYC  G 
Sbjct: 418 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 477

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M + G  P A TYN L++ L+ ++K+ +A  +L +M + GI+P+ ITY  
Sbjct: 478 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 537

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C   +   AF L + M   G++P    Y  L   L K  R   A++ +   + KG
Sbjct: 538 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR---AEEAYSFIVRKG 594

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +    V +  LIDG    GN + A +L++ M      PD  TY+ L+H  C+Q ++ EA 
Sbjct: 595 VALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEAL 654

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LDQM  RGIK    ++                             P+  TY   I   
Sbjct: 655 PILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSY 714

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
           CK    + AE+L+ +M  +G+ PD  TY  LI+G   +  +D+A
Sbjct: 715 CKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 758



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 157/316 (49%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY + + G+C + + EEA  +L    + G  PT VT+  LI+GYC    
Sbjct: 349 MEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 407

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A   +++M+          +  LI+ L+ + ++ EA ++L E+   G+VP+ ITY  
Sbjct: 408 FDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTS 467

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G    A  +   M   G QP   TY SL++ L K  ++ +A  L       G
Sbjct: 468 IIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDG 527

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+++ +  L+ G C   + + AF L + M++  + PDE  Y  L    C+ G+ EEA 
Sbjct: 528 IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 587

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +    R+G+         T++ Y  LI G  K    D A  L+  M+ +G TPD  TY
Sbjct: 588 SFI---VRKGVA-------LTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTY 637

Query: 301 FSLIEGIASVDKAAES 316
             L+  +    +  E+
Sbjct: 638 SVLLHALCKQKRLNEA 653



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 163/321 (50%), Gaps = 26/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++PD + Y      +CK GR EEA   + +    G+  T V Y TLIDG+   GN
Sbjct: 558 MEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGN 614

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +  + M+ +G  P + TY++L+H L  ++++ EA  +L +M  +GI      Y I
Sbjct: 615 TDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTI 674

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   R G    A  +++EM   G +P+  TYT  I    K+ R+ +A+ L      +G
Sbjct: 675 LIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG 734

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH------------ 228
           + PD+V +N LIDG    G I+RAFS LK M      P+  TY  L+             
Sbjct: 735 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 794

Query: 229 ----GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
               G     +++   +LL++M + G+       NPT  TY++LI G CK    + A  L
Sbjct: 795 VDTSGMWNLIELDITWQLLERMVKHGL-------NPTVTTYSSLIAGFCKAGRLEEACLL 847

Query: 285 LREMVSKGITPDDNTYFSLIE 305
           L  M  KG++P+++ Y  LI+
Sbjct: 848 LDHMCGKGLSPNEDIYTLLIK 868



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 166/360 (46%), Gaps = 47/360 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G QP+++TY S + G+ K+ +L +A  +L +M+++G++P  +TY TL+ G C++ +
Sbjct: 488 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 547

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   + M + G+ P    Y +L   L    K   A++    +  KG+    + Y  
Sbjct: 548 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALC---KAGRAEEAYSFIVRKGVALTKVYYTT 604

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN   A +L + MI +G  P   TY+ L+  L KQ R+ EA  + +    +G
Sbjct: 605 LIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRG 664

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   I  +  LID     G  + A  +  EM      P   TY   ++  C++G++E+A 
Sbjct: 665 IKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE 724

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M+R G+ PD +++N                            P   TY  L++ L
Sbjct: 725 DLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHL 784

Query: 273 CKNQ----------------EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K                  E D+  +LL  MV  G+ P   TY SLI G     +  E+
Sbjct: 785 LKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEA 844



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 154/339 (45%), Gaps = 43/339 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+ TY + +   CKEG L  A R    + E GL P   T N L+ GYC  G L  A
Sbjct: 178 GLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 237

Query: 65  FSF----------RDE-------------------------MVKQGIMPTASTYNLLIHE 89
                        R+E                         M + G  P    +  LI  
Sbjct: 238 CWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISG 297

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
           L    ++ +A  +   M + G+VP  +TYN +I GY + G    A  + + M   G  P 
Sbjct: 298 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPD 357

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY +LI+ L  Q +  EA++L  N + +G  P +V F  LI+G+C     + A  +  
Sbjct: 358 DWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKN 416

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           +M   K   D   +  L++   ++ +++EA+ LL+++   G+ P+ I       TY ++I
Sbjct: 417 KMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVI-------TYTSII 469

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G CK+ + D+A E+L+ M   G  P+  TY SL+ G+ 
Sbjct: 470 DGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 508



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            + P  Y +   +  + +    E   R+  Q+ ++GL+P  VTYNT+I  YC +G+L  A
Sbjct: 145 ALSPKCYNFA--LRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTA 202

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             +   +++ G+ P   T N L+       ++ +A  +   M   G   +  +Y ILI G
Sbjct: 203 HRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQG 262

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     +KA  L   M   G  P +  +T LI  L K  R+ +A  LF+     G++P 
Sbjct: 263 LCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPS 322

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +NA+I G+   G +  A  + + M++   HPD+ TYNTL++G C Q K EEA  LL+
Sbjct: 323 VMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLN 381

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
              + G       F PT +T+  LI G C  ++ D A  +  +M+S     D   +  LI
Sbjct: 382 NAVKEG-------FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLI 434

Query: 305 EGIASVDKAAES 316
             +   D+  E+
Sbjct: 435 NSLIKKDRLKEA 446



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 147/351 (41%), Gaps = 58/351 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDSYTY   +  +CK+ RL EA  +L+QM   G+  T   Y  LID    +G 
Sbjct: 625 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EM   G  P+A+TY + I+    E ++ +A+D++ +M  +G+ PD +TYNI
Sbjct: 685 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 744

Query: 121 LINGYCRCGNAKKAFS-------------------------------------------- 136
           LI+G    G   +AFS                                            
Sbjct: 745 LIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLI 804

Query: 137 -------LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                  L + M+  G+ PT+ TY+SLI    K  R+ EA  L ++   KG+ P+  ++ 
Sbjct: 805 ELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 864

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI   C     E+A S +  M      P   +Y  L+ G C +G  E+ + L   +   
Sbjct: 865 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLEL 924

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           G   D ++       +  L  GL K    D+  ++L  M  +       TY
Sbjct: 925 GYNHDEVA-------WKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 968



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 64/282 (22%)

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           R   +A   ++  G   +      YN  +    R    +    ++ +++  G+ P  +TY
Sbjct: 127 RVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTY 186

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
            ++I    K+  +  A + F   L  G+ P+    NAL+ G+C  G + +A  L   M  
Sbjct: 187 NTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPL 246

Query: 214 MKVHPDEVTYNTLMH-----------------------------------GRCRQGKVEE 238
           M    +E +Y  L+                                    G C+ G+V +
Sbjct: 247 MGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGD 306

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           AR L D M + G+ P  +++N                            P   TYN LI 
Sbjct: 307 ARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIY 366

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           GLC +Q+ + AEELL   V +G TP   T+ +LI G    +K
Sbjct: 367 GLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 407



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 35/158 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM------------------------ 36
           M   G+ P   TY S ++G CK GRLEEA  +L+ M                        
Sbjct: 816 MVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKF 875

Query: 37  -----------KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                       E G  P   +Y  L+ G CN+G+ E   S   ++++ G       + +
Sbjct: 876 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI 935

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           L   LL    +     ML  M ++     S TY ++ N
Sbjct: 936 LNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALVTN 973



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP   +Y   V G+C EG  E+   +   + E G     V +  L DG    G 
Sbjct: 886 MSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGY 945

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +++ F     M K+    ++ TY L+ +++
Sbjct: 946 VDICFQMLSIMEKRYCCISSQTYALVTNKM 975


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 173/316 (54%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P+   +   +SG+CK GR+ +A  + + M +NG+VP+ +TYN +I GY   G 
Sbjct: 279 MKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   ++ M K G  P   TYN LI+ L  ++K  EA+++L    ++G  P  +T+  
Sbjct: 339 MNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTN 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC       A  + ++M+    +  +  +  LI  L K++R+ EA +L     A G
Sbjct: 398 LINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANG 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+++ + ++IDG+C +G ++ A  +LK M+R    P+  TYN+LM+G  +  K+ +A 
Sbjct: 458 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 517

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M++ GI P+ I       TY  L+QG C   + D A  L   M   G+ PD++ Y
Sbjct: 518 ALLTKMQKDGIIPNVI-------TYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAY 570

Query: 301 FSLIEGIASVDKAAES 316
             L + +    +A E+
Sbjct: 571 AVLTDALCKAGRAEEA 586



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 171/344 (49%), Gaps = 34/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S   + D   +G  ++ + K+ RL+EA  +L ++  NGLVP  +TY ++IDGYC  G 
Sbjct: 418 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 477

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M + G  P A TYN L++ L+ ++K+ +A  +L +M + GI+P+ ITY  
Sbjct: 478 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 537

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C   +   AF L + M   G++P    Y  L   L K  R   A++ +   + KG
Sbjct: 538 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR---AEEAYSFIVRKG 594

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +    V +  LIDG    GN + A +L++ M      PD  TY+ L+H  C+Q ++ EA 
Sbjct: 595 VALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEAL 654

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LDQM  RGIK    ++                             P+  TY   I   
Sbjct: 655 PILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSY 714

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
           CK    + AE+L+ +M  +G+ PD  TY  LI+G   +  +D+A
Sbjct: 715 CKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 758



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 157/316 (49%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY + + G+C + + EEA  +L    + G  PT VT+  LI+GYC    
Sbjct: 349 MEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 407

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A   +++M+          +  LI+ L+ + ++ EA ++L E+   G+VP+ ITY  
Sbjct: 408 FDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTS 467

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G    A  +   M   G QP   TY SL++ L K  ++ +A  L       G
Sbjct: 468 IIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDG 527

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+++ +  L+ G C   + + AF L + M++  + PDE  Y  L    C+ G+ EEA 
Sbjct: 528 IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 587

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +    R+G+         T++ Y  LI G  K    D A  L+  M+ +G TPD  TY
Sbjct: 588 SFI---VRKGVA-------LTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTY 637

Query: 301 FSLIEGIASVDKAAES 316
             L+  +    +  E+
Sbjct: 638 SVLLHALCKQKRLNEA 653



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 163/321 (50%), Gaps = 26/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++PD + Y      +CK GR EEA   + +    G+  T V Y TLIDG+   GN
Sbjct: 558 MEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGN 614

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +  + M+ +G  P + TY++L+H L  ++++ EA  +L +M  +GI      Y I
Sbjct: 615 TDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTI 674

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   R G    A  +++EM   G +P+  TYT  I    K+ R+ +A+ L      +G
Sbjct: 675 LIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG 734

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH------------ 228
           + PD+V +N LIDG    G I+RAFS LK M      P+  TY  L+             
Sbjct: 735 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 794

Query: 229 ----GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
               G     +++   +LL++M + G+       NPT  TY++LI G CK    + A  L
Sbjct: 795 VDTSGMWNLIELDITWQLLERMVKHGL-------NPTVTTYSSLIAGFCKAGRLEEACLL 847

Query: 285 LREMVSKGITPDDNTYFSLIE 305
           L  M  KG++P+++ Y  LI+
Sbjct: 848 LDHMCGKGLSPNEDIYTLLIK 868



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 166/360 (46%), Gaps = 47/360 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G QP+++TY S + G+ K+ +L +A  +L +M+++G++P  +TY TL+ G C++ +
Sbjct: 488 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 547

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   + M + G+ P    Y +L   L    K   A++    +  KG+    + Y  
Sbjct: 548 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALC---KAGRAEEAYSFIVRKGVALTKVYYTT 604

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN   A +L + MI +G  P   TY+ L+  L KQ R+ EA  + +    +G
Sbjct: 605 LIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRG 664

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   I  +  LID     G  + A  +  EM      P   TY   ++  C++G++E+A 
Sbjct: 665 IKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE 724

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M+R G+ PD +++N                            P   TY  L++ L
Sbjct: 725 DLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHL 784

Query: 273 CKNQ----------------EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K                  E D+  +LL  MV  G+ P   TY SLI G     +  E+
Sbjct: 785 LKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEA 844



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 157/339 (46%), Gaps = 43/339 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+ TY + +   CKEG L  A R    + E GL P   T N L+ GYC  G L  A
Sbjct: 178 GLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 237

Query: 65  ----------------FSF-------------RDEMV------KQGIMPTASTYNLLIHE 89
                           +S+             R+ +V      + G  P    +  LI  
Sbjct: 238 CWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISG 297

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
           L    ++ +A  +   M + G+VP  +TYN +I GY + G    A  + + M   G  P 
Sbjct: 298 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPD 357

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY +LI+ L  Q +  EA++L  N + +G  P +V F  LI+G+C     + A  +  
Sbjct: 358 DWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKN 416

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           +M   K   D   +  L++   ++ +++EA+ LL+++   G+ P+ I       TY ++I
Sbjct: 417 KMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVI-------TYTSII 469

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G CK+ + D+A E+L+ M   G  P+  TY SL+ G+ 
Sbjct: 470 DGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 508



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            + P  Y +   +  + +    E   R+  Q+ ++GL+P  VTYNT+I  YC +G+L  A
Sbjct: 145 ALSPKCYNFA--LRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTA 202

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 +++ G+ P   T N L+       ++ +A  +   M   G   +  +Y ILI G
Sbjct: 203 HRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQG 262

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     ++A  L   M   G  P +  +T LI  L K  R+ +A  LF+     G++P 
Sbjct: 263 LCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPS 322

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +NA+I G+   G +  A  + + M++   HPD+ TYNTL++G C Q K EEA  LL+
Sbjct: 323 VMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLN 381

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
              + G       F PT +T+  LI G C  ++ D A  +  +M+S     D   +  LI
Sbjct: 382 NAVKEG-------FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLI 434

Query: 305 EGIASVDKAAES 316
             +   D+  E+
Sbjct: 435 NSLIKKDRLKEA 446



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 147/351 (41%), Gaps = 58/351 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDSYTY   +  +CK+ RL EA  +L+QM   G+  T   Y  LID    +G 
Sbjct: 625 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EM   G  P+A+TY + I+    E ++ +A+D++ +M  +G+ PD +TYNI
Sbjct: 685 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 744

Query: 121 LINGYCRCGNAKKAFS-------------------------------------------- 136
           LI+G    G   +AFS                                            
Sbjct: 745 LIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLI 804

Query: 137 -------LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                  L + M+  G+ PT+ TY+SLI    K  R+ EA  L ++   KG+ P+  ++ 
Sbjct: 805 ELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 864

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI   C     E+A S +  M      P   +Y  L+ G C +G  E+ + L   +   
Sbjct: 865 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLEL 924

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           G   D ++       +  L  GL K    D+  ++L  M  +       TY
Sbjct: 925 GYNHDEVA-------WKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 968



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 64/282 (22%)

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           R   +A   ++  G   +      YN  +    R    +    ++ +++  G+ P  +TY
Sbjct: 127 RVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTY 186

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
            ++I    K+  +  A + F   L  G+ P+    NAL+ G+C  G + +A  L   M  
Sbjct: 187 NTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPL 246

Query: 214 MKVHPDEVTYNTLMH-----------------------------------GRCRQGKVEE 238
           M    +E +Y  L+                                    G C+ G+V +
Sbjct: 247 MGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGD 306

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           AR L D M + G+ P  +++N                            P   TYN LI 
Sbjct: 307 ARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIY 366

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           GLC +Q+ + AEELL   V +G TP   T+ +LI G    +K
Sbjct: 367 GLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 407



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 35/158 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM------------------------ 36
           M   G+ P   TY S ++G CK GRLEEA  +L+ M                        
Sbjct: 816 MVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKF 875

Query: 37  -----------KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                       E G  P   +Y  L+ G CN+G+ E   S   ++++ G       + +
Sbjct: 876 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI 935

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           L   LL    +     ML  M ++     S TY ++ N
Sbjct: 936 LNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALVTN 973



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP   +Y   V G+C EG  E+   +   + E G     V +  L DG    G 
Sbjct: 886 MSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGY 945

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +++ F     M K+    ++ TY L+ +++
Sbjct: 946 VDICFQMLSIMEKRYCCISSQTYALVTNKM 975


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 169/330 (51%), Gaps = 30/330 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  TY S V G+C++G+++ A  M+ +MK  G+ P   T++ LI G+CN   ++ A
Sbjct: 108 GIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEA 167

Query: 65  FS-FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
              +++ +      P   TY  LI        + +A  ML  M  +  VP+ +TY+ L++
Sbjct: 168 LKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLH 227

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G+  +A  L   M  KG  P ++TYT+LI  L   +++  A  L +   A    P
Sbjct: 228 GLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPP 287

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +NAL+DG+C  G IE A  L KEM      PD +TY  L+ G C   ++EEAR LL
Sbjct: 288 DTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLL 347

Query: 244 DQMKR-RGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
           + MK   GI PD ++++                            P  +TY++LI GLCK
Sbjct: 348 ENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCK 407

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLI 304
               D A E+L+ MV+K + P   T+ S+I
Sbjct: 408 AGRVDHAMEVLKNMVNKRVEPSVGTFNSVI 437



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 168/317 (52%), Gaps = 10/317 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKGNLE 62
           + V PD  TY + ++G CK+G ++ A  +L +M   +G+ P  VTY +++DG C  G ++
Sbjct: 71  KSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMD 130

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE-MGEKGIVPDSITYNIL 121
            A     EM  +G+ P   T++ LI      RK+ EA  + KE +      PD +TY  L
Sbjct: 131 RACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTAL 190

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G+C+ GN +KA  +   M  +   P ++TY+SL+  L K   + +A  LF    +KG 
Sbjct: 191 IDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGC 250

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P++V +  LI G C    ++ A  L+ EM      PD V+YN L+ G CR G++EEA++
Sbjct: 251 VPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQ 310

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM-VSKGITPDDNTY 300
           L  +M  +   PD       R+TY  L++G C     + A  LL  M  + GI PD  TY
Sbjct: 311 LFKEMATKSCLPD-------RITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTY 363

Query: 301 FSLIEGIASVDKAAESS 317
             ++ G +   +  E++
Sbjct: 364 SIVVAGYSRAKRFVEAA 380



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 165/309 (53%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S   +PD  TY + + G CK G LE+A +ML  M+    VP  VTY++L+ G C  G+
Sbjct: 175 LTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGD 234

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M  +G +P   TY  LIH L    K+  A  ++ EM      PD+++YN 
Sbjct: 235 LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNA 294

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF-LAK 179
           L++GYCR G  ++A  L  EM  K   P  +TYT L+      +R+ EA  L EN   A 
Sbjct: 295 LLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 354

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD+V ++ ++ G+        A   ++EM    V P+ VTY++L+ G C+ G+V+ A
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHA 414

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L  M  + ++       P+  T+N++I  LC+  + D A +LL  M + G+ P   T
Sbjct: 415 MEVLKNMVNKRVE-------PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVT 467

Query: 300 YFSLIEGIA 308
           Y +L+EG +
Sbjct: 468 YTTLLEGFS 476



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 172/314 (54%), Gaps = 10/314 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKGNLEMA 64
           V P+  TY   V+G+CK     +A  +L++M++   + P  VTY+T+I+G+C +G ++ A
Sbjct: 37  VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 96

Query: 65  FSFRDEMV-KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                EMV + GI P   TY  ++  L  + KM  A +M++EM  KG+ PD  T++ LI 
Sbjct: 97  CEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 156

Query: 124 GYCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           G+C      +A  L+ E++     +P ++TYT+LI    K   + +A ++      +  +
Sbjct: 157 GWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCV 216

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++V +++L+ G C  G++++A  L + M      P+ VTY TL+HG C   KV+ AR L
Sbjct: 217 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +D+M      PD +S       YNAL+ G C+    + A++L +EM +K   PD  TY  
Sbjct: 277 MDEMTATCCPPDTVS-------YNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTC 329

Query: 303 LIEGIASVDKAAES 316
           L+ G  +  +  E+
Sbjct: 330 LVRGFCNASRLEEA 343



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/273 (35%), Positives = 155/273 (56%), Gaps = 11/273 (4%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           PT VT+  +IDG+C    L+ A +  ++M ++ + P   TYN++++ L   R   +A ++
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 103 LKEMGE-KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVL 160
           LKEM + K + PD +TY+ +ING+C+ G   +A  +  EM+ + GI P ++TYTS++  L
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE-MDRMKVHPD 219
            +  +M  A ++      KG+ PD   F+ALI G C    ++ A  L KE +      PD
Sbjct: 124 CRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPD 183

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            VTY  L+ G C+ G +E+A ++L  M+ R   P+ +       TY++L+ GLCK  + D
Sbjct: 184 VVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV-------TYSSLLHGLCKAGDLD 236

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            A +L R M SKG  P+  TY +LI G+ +  K
Sbjct: 237 QALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHK 269



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 10/260 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK-ENGLVPTAVTYNTLIDGYCNKG 59
           M ++   PD  TY   V G C   RLEEA  +LE MK   G+ P  VTY+ ++ GY    
Sbjct: 315 MATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAK 374

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A  F  EM+ + + P A TY+ LI  L    ++  A ++LK M  K + P   T+N
Sbjct: 375 RFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFN 434

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE----- 174
            +I   CR G+  +A+ L   M   G++P M+TYT+L+   S+  RM  A +LFE     
Sbjct: 435 SVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKK 494

Query: 175 ---NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
              +  A  ++P+   F+ALI G C    I++A ++++E+   +  P E     ++ G  
Sbjct: 495 AKKSSSAANLVPEQA-FSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLL 553

Query: 232 RQGKVEEARRLLDQMKRRGI 251
           R G+ EEA +L++ + + G+
Sbjct: 554 RAGRTEEAGKLINSISKVGL 573



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 34/135 (25%)

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------- 259
           M+  P  VT+  ++ G C+  ++++A    ++M R  + P+  ++N              
Sbjct: 1   MECQPTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSK 59

Query: 260 ---------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFSL 303
                          P  +TY+ +I G CK  E D A E+LREMV++ GI PD  TY S+
Sbjct: 60  AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSV 119

Query: 304 IEGIA---SVDKAAE 315
           ++G+     +D+A E
Sbjct: 120 VDGLCRDGKMDRACE 134


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/264 (36%), Positives = 154/264 (58%), Gaps = 4/264 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S   +P+  TY + +SG C+E +L  A  +L +MKE GLVP   TY TLIDG+C  GN
Sbjct: 337 VRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGN 396

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A+   + M  +G  P   TYN +++ L    ++ EA  ML++  + G+ PD  TYNI
Sbjct: 397 FERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNI 456

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+  N ++A +L ++M+  GIQP + +YT+LI V  ++NRM E++  FE  +  G
Sbjct: 457 LMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIG 516

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + ++I G+C  GN+  A      +      PD +TY  ++ G C+Q K +EAR
Sbjct: 517 IIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEAR 576

Query: 241 RLLDQMKRRGIKPDHISFNPTRLT 264
            L D M  +G+ P  +    TR+T
Sbjct: 577 SLYDSMIEKGLVPCEV----TRIT 596



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 168/313 (53%), Gaps = 8/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P+   +   + G+CK G +++A  MLE+M   G  P   T+ +LIDG C KG  E A
Sbjct: 270 GLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKA 329

Query: 65  FSFRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           F    ++V+ +   P   TY  +I     E K+  A+ +L  M E+G+VP++ TY  LI+
Sbjct: 330 FRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLID 389

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+ GN ++A+ L + M  +G  P + TY +++  L K+ R+ EA ++ E+    G+ P
Sbjct: 390 GHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKP 449

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +N L+  HC   NI +A +L  +M ++ + PD  +Y TL+   CR+ +++E+    
Sbjct: 450 DKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFF 509

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++  R GI P       T  TY ++I G C+     LA +    +   G  PD  TY ++
Sbjct: 510 EEAVRIGIIP-------TNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAI 562

Query: 304 IEGIASVDKAAES 316
           I G+    K  E+
Sbjct: 563 ISGLCKQSKRDEA 575



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 152/304 (50%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M  +G +P+ YT+ S + G+CK+G  E+A R+ L+ ++     P  +TY  +I GYC + 
Sbjct: 301 MVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRED 360

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A      M +QG++P  +TY  LI           A D++  M  +G  P+  TYN
Sbjct: 361 KLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYN 420

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            ++NG C+ G  ++A+ + ++    G++P   TY  L+    KQ  + +A  LF   L  
Sbjct: 421 AIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKI 480

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PDI  +  LI   C    ++ +    +E  R+ + P   TY +++ G CR+G +  A
Sbjct: 481 GIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLA 540

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +   ++   G  PD I       TY A+I GLCK  + D A  L   M+ KG+ P + T
Sbjct: 541 MKFFHRLSDHGCAPDSI-------TYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVT 593

Query: 300 YFSL 303
             +L
Sbjct: 594 RITL 597



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 174/352 (49%), Gaps = 43/352 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P++ T    +    + G +E A  + E+M   G+ P +++Y  ++  YC  GN
Sbjct: 161 MHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGN 220

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  +   M+++G +   +T+ L+I     +     A    + + + G+ P+ I +  
Sbjct: 221 ILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTC 280

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF------- 173
           +I G C+ G+ K+AF + +EM+ KG +P + T+TSLI  L K+    +A +LF       
Sbjct: 281 MIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSE 340

Query: 174 -------------------------ENFLAK----GMLPDIVMFNALIDGHCTNGNIERA 204
                                    E  L++    G++P+   +  LIDGHC  GN ERA
Sbjct: 341 NHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERA 400

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           + L+  M      P+  TYN +++G C++G+V+EA ++L+   + G+KPD       + T
Sbjct: 401 YDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPD-------KFT 453

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN L+   CK +    A  L  +M+  GI PD ++Y +LI      ++  ES
Sbjct: 454 YNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKES 505



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 155/294 (52%), Gaps = 8/294 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           GRL+EA  M+ +M   GLVP   T N +I      G +E A    +EM  +G+ P + +Y
Sbjct: 149 GRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISY 208

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            +++        ++EAD  L  M E+G V D+ T+ ++I+ +   G   +A      ++ 
Sbjct: 209 RVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVD 268

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G++P ++ +T +I  L K+  + +A ++ E  + KG  P++    +LIDG C  G  E+
Sbjct: 269 MGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEK 328

Query: 204 AFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           AF L  ++ R + H P+ +TY  ++ G CR+ K+  A  LL +MK +G+ P+        
Sbjct: 329 AFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPN-------T 381

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY  LI G CK    + A +L+  M S+G +P+  TY +++ G+    +  E+
Sbjct: 382 NTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEA 435



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 116/232 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ P++ TY + + G CK G  E A  ++  M   G  P   TYN +++G C +G 
Sbjct: 372 MKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGR 431

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+   ++  + G+ P   TYN+L+ E   +  + +A  +  +M + GI PD  +Y  
Sbjct: 432 VQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTT 491

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR    K++    +E +  GI PT  TYTS+I    ++  +  A + F      G
Sbjct: 492 LIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHG 551

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
             PD + + A+I G C     + A SL   M    + P EVT  TL +  C+
Sbjct: 552 CAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 64/250 (25%)

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  +   G  K+A  +  EM ++G+ P   T   +I V S+   +  A+ LFE    +G
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 181 MLPDIVMFNALIDGHCTNGNI-----------------------------------ERAF 205
           + PD + +  ++  +C  GNI                                    RA 
Sbjct: 201 VQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRAL 260

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD---HISF---- 258
              + +  M + P+ + +  ++ G C++G +++A  +L++M  +G KP+   H S     
Sbjct: 261 WYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320

Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                  P  LTY A+I G C+  + + AE LL  M  +G+ P+
Sbjct: 321 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPN 380

Query: 297 DNTYFSLIEG 306
            NTY +LI+G
Sbjct: 381 TNTYTTLIDG 390


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 7/308 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D Y+    V G+C EGR+EE  R++E     G VP AV YN LIDGYC +G++       
Sbjct: 275 DDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLL 334

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM  +GIMPT  TY  +IH L  +  + + + +L EM E+G+ P+   YN +I   C+C
Sbjct: 335 GEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKC 394

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            +A +A ++ ++M+     P ++T+ +LI    ++  + EA +L    + + + P+ + +
Sbjct: 395 RSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSY 454

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             LI G C  G +  A  LL EM      PD VT   L+HG    G+V+EA  + ++M  
Sbjct: 455 TPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAE 514

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           R + PD          YN LI GLCK +    A+ LL EM+ + + PD   Y +LI+G  
Sbjct: 515 RQVMPDAN-------IYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFI 567

Query: 309 SVDKAAES 316
             DK +++
Sbjct: 568 RSDKLSDA 575



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 169/310 (54%), Gaps = 7/310 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  T+ + ++  C+EG +EEA ++L +     L P  ++Y  LI G+C +G + +A   
Sbjct: 414 PDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDL 473

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM+ +G  P   T   LIH L++  ++ EA  + ++M E+ ++PD+  YN+LI+G C+
Sbjct: 474 LVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCK 533

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                 A +L  EM+ + +QP    YT+LI    + +++ +A ++FE    KG   DIV 
Sbjct: 534 KRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVA 593

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +NA+I G+C +G +  A   +  M ++   PDE TY TL+ G  ++G ++ A R L  M 
Sbjct: 594 YNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMM 653

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +R  KP+ +       TY +LI G C     D AE L   M S+G+ P+   Y  LI  +
Sbjct: 654 KRRCKPNIV-------TYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSL 706

Query: 308 ASVDKAAESS 317
              DKA +++
Sbjct: 707 FKKDKAIQAA 716



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P   TYG+ +  + ++  L +   +L +MKE GL P    YNT+I   C   +
Sbjct: 337 MEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRS 396

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  ++MV     P   T+N LI     E  + EA  +L+E   + + P+ ++Y  
Sbjct: 397 ASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTP 456

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G    A  L  EMI +G  P ++T  +LI  L    ++ EA  + E    + 
Sbjct: 457 LIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQ 516

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD  ++N LI G C    +  A +LL EM   KV PD+  Y TL+ G  R  K+ +AR
Sbjct: 517 VMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDAR 576

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ + M+ +G   D ++       YNA+I+G CK+   + A   +  M   G  PD+ TY
Sbjct: 577 KIFEFMEEKGGYRDIVA-------YNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTY 629

Query: 301 FSLIEGIA 308
            +LI+G A
Sbjct: 630 TTLIDGYA 637



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 155/358 (43%), Gaps = 43/358 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  T G+ + G+   G+++EA  + E+M E  ++P A  YN LI G C K  
Sbjct: 477 MIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRM 536

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +   EM++Q + P    Y  LI   +   K+ +A  + + M EKG   D + YN 
Sbjct: 537 LSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNA 596

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G   +A      M   G  P   TYT+LI   +K+  +  A +   + + + 
Sbjct: 597 MIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRR 656

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL-------------- 226
             P+IV + +LI G+C  GN + A  L   M    + P+ V Y  L              
Sbjct: 657 CKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAA 716

Query: 227 -----------------MH------GRCRQGKVEEARRLLDQMKRRGIKPDHI------S 257
                            MH        CR G +       DQ  ++    D         
Sbjct: 717 AYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDG 776

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            +P    YNA+I  LC++     A EL  +M +KG  PD  T+ SL+ G +SV K+ +
Sbjct: 777 LDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGKSGK 834



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 122/293 (41%), Gaps = 50/293 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + VQPD + Y + + G  +  +L +A ++ E M+E G     V YN +I GYC  G 
Sbjct: 547 MLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGM 606

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M K G +P   TY  LI     +  +  A   L +M ++   P+ +TY  
Sbjct: 607 MNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYAS 666

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL--- 177
           LI GYC  GN   A  L   M  +G+ P ++ YT LI  L K+++ I+A   FE+ L   
Sbjct: 667 LICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNH 726

Query: 178 -----------------------------------------------AKGMLPDIVMFNA 190
                                                          + G+ P I  +NA
Sbjct: 727 CSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNA 786

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +I   C +  + +A  L ++M      PD VT+ +L++G    GK  + R  L
Sbjct: 787 IIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGKSGKWRSAL 839



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 100/273 (36%), Gaps = 53/273 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY + + G  K+G ++ A R L  M +    P  VTY +LI GYCN GN
Sbjct: 617 MRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGN 676

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-------------------- 100
            + A      M  +G+ P    Y +LI  L  + K ++A                     
Sbjct: 677 TDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHY 736

Query: 101 ------------------------------DMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                         D+ K +   G+ P    YN +I   CR   
Sbjct: 737 LVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNM 796

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KA  L ++M +KG  P  +T+ SL++  S   +  +      N   +     I  +  
Sbjct: 797 LGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGKSGKWRSALPNEFQQDEFEIICKYMT 856

Query: 191 LIDGHC---TNGNIERAFSLLKEMDRMKVHPDE 220
           L++ H        + R   L  E  +    P++
Sbjct: 857 LLNQHVMSPVRDEVSRVLQLYAEEFQFLQQPEQ 889


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 175/346 (50%), Gaps = 38/346 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+YT+ S + G C+  +++ A  + ++M   G     V+Y  LI+G+C  G 
Sbjct: 37  MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGR 96

Query: 61  LEMAFSFRDEMVKQ-------------------------------GIMPTASTYNLLIHE 89
           ++ A     EM +                                G  P+   Y  ++  
Sbjct: 97  IDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDF 156

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
              ERK  EA++ML+EM EKG+ P  +T   +IN YC+ G    A  + + M  +G +P 
Sbjct: 157 RCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 216

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + TY +L+     + ++ +A  L       G+ PD V +N LI G C +G+IE AF LL+
Sbjct: 217 VWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 276

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M+   +  D+ TYN L++  C+ G+ ++A  L D ++ RGIKP+ ++F       N+LI
Sbjct: 277 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF-------NSLI 329

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            GLCK+ + D+A + L +MVS G TPD  TY S IE +  +  + E
Sbjct: 330 NGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 375



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 28/338 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +P +  Y + V   C E + +EA  ML++M E GL P  VT   +I+ YC +G 
Sbjct: 138 MKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGR 197

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M  +G  P   TYN L+     E K+ +A  +L +M   G+ PD++TYN+
Sbjct: 198 MSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNL 257

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+ + AF L   M   G+     TY +LI  L K  R  +A  LF++   +G
Sbjct: 258 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 317

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V FN+LI+G C +G ++ A+  L++M      PD  TY++ +   C+    +E  
Sbjct: 318 IKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGL 377

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
             + +M ++ +KP  +++                            NP  +TY   ++  
Sbjct: 378 SFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAY 437

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           C     + AE +L EM   G+T D   Y +L++G AS+
Sbjct: 438 CIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASI 475



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 156/328 (47%), Gaps = 10/328 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV PD+ TY   + G C +G +E A R+L  M+ +GL+    TYN LI+  C  G 
Sbjct: 243 MRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGR 302

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  D +  +GI P A T+N LI+ L    K+  A   L++M   G  PD+ TY+ 
Sbjct: 303 TDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSS 362

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C+   +++  S   EM+ K ++P+ + YT +I  L K+       + +   ++ G
Sbjct: 363 FIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 422

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +   +  +C  G +  A ++L EM +  V  D + YNTLM G    G+ + A 
Sbjct: 423 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAV 482

Query: 241 RLLDQMKRRGIKPDHISF-------NPTRLTYNAL---IQGLCKNQEGDLAEELLREMVS 290
            +L QM      P+  ++          RL  + L     G+ K  E      L   M  
Sbjct: 483 SILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKK 542

Query: 291 KGITPDDNTYFSLIEGIASVDKAAESSN 318
               P+  TY S++EG +   +  E+++
Sbjct: 543 NEFLPNSGTYSSILEGFSEDGRTEEATS 570



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 164/387 (42%), Gaps = 80/387 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D YTY + ++ +CK+GR ++A  + + ++  G+ P AVT+N+LI+G C  G 
Sbjct: 278 MEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGK 337

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A+ F ++MV  G  P   TY+  I  L   +   E    + EM +K + P ++ Y I
Sbjct: 338 VDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTI 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +  N         EM+  G  P ++TYT+ +     + R+ EA+ +       G
Sbjct: 398 VIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNG 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM----------------------------- 211
           +  D + +N L+DGH + G  + A S+LK+M                             
Sbjct: 458 VTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVL 517

Query: 212 --------------------DRMKVH---PDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
                               D MK +   P+  TY++++ G    G+ EEA  L+  MK 
Sbjct: 518 PLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKE 577

Query: 249 RGIKPD----------------------------HISFNPTRLTYNALIQGLCKNQEGDL 280
             I  +                               F P  ++Y  L+ GL    + D 
Sbjct: 578 DSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDK 637

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGI 307
           A+E+      K  +PD+  +  +I+G+
Sbjct: 638 AKEIFMNSRWKDYSPDEIVWKVIIDGL 664



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 17/275 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  TY + +   C EGRL EA  +L +M +NG+    + YNTL+DG+ + G 
Sbjct: 418 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 477

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER--------------KMVEADD---ML 103
            + A S   +M     +P   TY +L+  L+  R              K +E  D   + 
Sbjct: 478 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLF 537

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
             M +   +P+S TY+ ++ G+   G  ++A SL   M    I      YT+L+    K 
Sbjct: 538 DVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKS 597

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            R ++A  L  + +  G +P ++ +  L+ G    G  ++A  +          PDE+ +
Sbjct: 598 KRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVW 657

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
             ++ G  ++G  + +R ++  ++R   +P H ++
Sbjct: 658 KVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 692



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 11/179 (6%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN +I   CR  +   A      M+  G +P   T+ SLI    + N++  A  LF+  
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +G   D+V + ALI+G C  G I+ A  L  EMD+    PD   Y  L+ G C+ G+ 
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRG 128

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           EE   +L +MK  G +P       TR  Y A++   C  ++   AEE+L+EM  KG+ P
Sbjct: 129 EEGLLMLRRMKELGWRPS------TR-AYAAVVDFRCWERKAKEAEEMLQEMFEKGLAP 180



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 11/174 (6%)

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
           H    P   TY ++I  L ++  +  A +     +  G  PD   FN+LI G+C    ++
Sbjct: 4   HAPPAPAAPTYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVD 63

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A  L  +M       D V+Y  L+ G C  G+++EA  L  +M +           P  
Sbjct: 64  VARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ-----------PDM 112

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             Y AL++GLCK   G+    +LR M   G  P    Y ++++      KA E+
Sbjct: 113 HMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEA 166



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK     P+S TY S + G  ++GR EEA+ ++  MKE+ +      Y  L+  +C    
Sbjct: 540 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKR 599

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+     M++ G +P   +Y  L+  L+ E +  +A ++      K   PD I + +
Sbjct: 600 YLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKV 659

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
           +I+G  + G++  +  +   +     +P+  TY  L
Sbjct: 660 IIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAML 695



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   +Y   +SG+  EG+ ++A  +    +     P  + +  +IDG   KG+
Sbjct: 610 MIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGH 669

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
            +++      + +    P+  TY +L  EL
Sbjct: 670 SDISREMIIMLERMNCRPSHQTYAMLTEEL 699


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 176/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   PD  TY   +   CK    ++A ++L++M++ G  P  VTYN +++G C +G 
Sbjct: 184 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F   +   G  P   +YN+++  L    +  +A++++ EMG+KG  P+ +T+N+
Sbjct: 244 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR G  + A  + +++   G  P  L+Y  L+    KQ +M +A    +  +++G
Sbjct: 304 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N L+   C +G ++ A  LL ++      P  ++YNT++ G  + GK +EA 
Sbjct: 364 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 423

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL++M  +G++PD I+++                            P  + YNA+I GL
Sbjct: 424 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 483

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK +E   A +L   M+  G  P+++TY  LIEG+A
Sbjct: 484 CKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 519



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 167/333 (50%), Gaps = 31/333 (9%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD   Y + V+G C  G+L+ A R++ +M    + P A TYNTLI G C +G    A + 
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAV 180

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            DEM+++  +P   TY +L+          +A  +L EM +KG  PD +TYN+++NG C+
Sbjct: 181 LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 240

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A      +   G +P  ++Y  ++  L    R  +A++L      KG  P++V 
Sbjct: 241 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT 300

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FN LI   C  G +E A  +L+++ +    P+ ++YN L+H  C+Q K+++A   LD M 
Sbjct: 301 FNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 360

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
            RG  PD +S+N                            P  ++YN +I GL K  +  
Sbjct: 361 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTK 420

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            A ELL EMVSKG+ PD  TY ++  G+   D+
Sbjct: 421 EALELLNEMVSKGLQPDIITYSTIAAGLCREDR 453



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 148/294 (50%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +P++ +Y   + G+C   R E+A  ++ +M + G  P  VT+N LI   C KG 
Sbjct: 254 LPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGL 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +++ K G  P + +YN L+H    ++KM +A   L  M  +G  PD ++YN 
Sbjct: 314 VEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   CR G    A  L  ++  KG  P +++Y ++I  L+K  +  EA +L    ++KG
Sbjct: 374 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ +  G C    IE A     ++  M + P+ V YN ++ G C++ +   A 
Sbjct: 434 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            L   M   G  P+         TY  LI+GL        A +LL E+ S+G+ 
Sbjct: 494 DLFAYMIGNGCMPNES-------TYTILIEGLAYEGLIKEARDLLDELCSRGVV 540



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 147/340 (43%), Gaps = 74/340 (21%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD+ T  + +  +   GR  EA R+L         P  + YN ++ GYC  G L+ A  
Sbjct: 93  RPDAGTCAALIKKLSASGRTAEARRVLAACG-----PDVMAYNAMVAGYCGAGQLDAA-- 145

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
                                      R++V          E  + PD+ TYN LI G C
Sbjct: 146 ---------------------------RRLV---------AEMPVEPDAYTYNTLIRGLC 169

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G    A ++ DEM+ +   P ++TYT L+    K++   +A +L +    KG  PDIV
Sbjct: 170 GRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIV 229

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N +++G C  G ++ A   LK +      P+ V+YN ++ G C   + E+A  L+ +M
Sbjct: 230 TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM 289

Query: 247 KRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEG 278
            ++G  P+ ++FN                            P  L+YN L+   CK ++ 
Sbjct: 290 GQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKM 349

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAE 315
           D A   L  MVS+G  PD  +Y +L+  +     VD A E
Sbjct: 350 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 389



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 66/116 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+QPD  TY +  +G+C+E R+E+A R   ++++ G+ P  V YN +I G C +  
Sbjct: 429 MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
              A      M+  G MP  STY +LI  L  E  + EA D+L E+  +G+V  S+
Sbjct: 489 THSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSL 544


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 182/319 (57%), Gaps = 15/319 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  TYG  ++G+CK GR++ A  +  ++ +    PT+V +NTLI G+   G 
Sbjct: 307 MLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGR 362

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A +   +MV   GI+P   TYN LI+    +  +  A ++L++M  KG  P+  +Y 
Sbjct: 363 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYT 422

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL++G+C+ G   +A++L +EM   G++P  + +  LI    K++R+ EA ++F     K
Sbjct: 423 ILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 482

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD+  FN+LI G C    I+ A  LL++M    V  + VTYNTL++   R+G+++EA
Sbjct: 483 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 542

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R+L+++M  +G   D I       TYN+LI+GLC+  E D A  L  +M+  G+ P   +
Sbjct: 543 RKLVNEMVFQGSLLDEI-------TYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSIS 595

Query: 300 YFSLIEGIAS---VDKAAE 315
              LI G+     V++A E
Sbjct: 596 CNILINGLCRSGMVEEAVE 614



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G +P+ Y+Y   V G CK G+++EA  +L +M  +GL P  V +N LI  +C +  
Sbjct: 409 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHR 468

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM ++G  P   T+N LI  L    ++  A  +L++M  +G+V +++TYN 
Sbjct: 469 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 528

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN + R G  K+A  L +EM+ +G     +TY SLI  L +   + +A  LFE  L  G
Sbjct: 529 LINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 588

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P  +  N LI+G C +G +E A    KEM      PD VT+N+L++G CR G++E+  
Sbjct: 589 LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 648

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +++  GI PD +       TYN L+  LCK      A  LL E +  G  P+D T+
Sbjct: 649 TMFRKLQAEGIPPDTV-------TYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTW 701

Query: 301 FSLIEGIA 308
             L++ + 
Sbjct: 702 SILLQSLV 709



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 164/308 (53%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G+ PD  TY S + G  K+G +  A  +L  M+  G  P   +Y  L+DG+C  G 
Sbjct: 374 VTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK 433

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A++  +EM   G+ P    +N LI     E ++ EA ++ +EM  KG  PD  T+N 
Sbjct: 434 IDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 493

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C     K A  L  +MI +G+    +TY +LI    ++  + EA +L    + +G
Sbjct: 494 LISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 553

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            L D + +N+LI G C  G +++A SL ++M R  + P  ++ N L++G CR G VEEA 
Sbjct: 554 SLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAV 613

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M  RG  PD +       T+N+LI GLC+    +    + R++ ++GI PD  TY
Sbjct: 614 EFQKEMVLRGSTPDIV-------TFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTY 666

Query: 301 FSLIEGIA 308
            +L+  + 
Sbjct: 667 NTLMSWLC 674



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 158/313 (50%), Gaps = 12/313 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR + P  +T+G  +  +C    ++ A  +L  M ++G VP +V Y TLI        
Sbjct: 202 MLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNR 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM   G +P A T+N +I  L    ++ EA  M+  M  +G  PD ITY  
Sbjct: 262 VNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGY 321

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           L+NG C+ G    A     ++ ++  +PT + + +LI       R+ +A  +  + +   
Sbjct: 322 LMNGLCKIGRVDAA----KDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 377

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++PD+  +N+LI G+   G +  A  +L++M      P+  +Y  L+ G C+ GK++EA
Sbjct: 378 GIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 437

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL++M   G+KP+ + F       N LI   CK      A E+ REM  KG  PD  T
Sbjct: 438 YNLLNEMSADGLKPNTVGF-------NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 490

Query: 300 YFSLIEGIASVDK 312
           + SLI G+  VD+
Sbjct: 491 FNSLISGLCEVDE 503



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 161/324 (49%), Gaps = 21/324 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNT----LIDGY 55
           MK  G+      + S +    K G   + +R++ +M+      PT  +YN     L+ G 
Sbjct: 131 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 190

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           C+K    +A +   +M+ + I PT  T+ +++  L    ++  A  +L++M + G VP+S
Sbjct: 191 CHK----VAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNS 246

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + Y  LI+   +C    +A  L +EM   G  P   T+  +I  L K +R+ EA ++   
Sbjct: 247 VIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNR 306

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            L +G  PD + +  L++G C  G ++ A  L   + +    P  V +NTL+HG    G+
Sbjct: 307 MLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGR 362

Query: 236 VEEARRLL-DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           +++A+ +L D +   GI PD         TYN+LI G  K     LA E+LR+M +KG  
Sbjct: 363 LDDAKAVLSDMVTSYGIVPD-------VCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCK 415

Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
           P+  +Y  L++G   + K  E+ N
Sbjct: 416 PNVYSYTILVDGFCKLGKIDEAYN 439



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 135/297 (45%), Gaps = 13/297 (4%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y   +  +   G  +   R+L QMK+ G+V     + +++  Y   G          EM
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 166

Query: 72  VK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                  PT  +YN+++  L+       A ++  +M  + I P   T+ +++   C    
Sbjct: 167 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNE 226

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A S+  +M   G  P  + Y +LI  LSK NR+ EA QL E     G +PD   FN 
Sbjct: 227 VDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 286

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +I G C    I  A  ++  M      PD++TY  LM+G C+ G+V+ A+ L  ++ +  
Sbjct: 287 VILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK-- 344

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV-SKGITPDDNTYFSLIEG 306
                    PT + +N LI G   +   D A+ +L +MV S GI PD  TY SLI G
Sbjct: 345 ---------PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYG 392



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 112/203 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV  ++ TY + ++   + G ++EA +++ +M   G +   +TYN+LI G C  G 
Sbjct: 514 MISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGE 573

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  ++M++ G++P++ + N+LI+ L     + EA +  KEM  +G  PD +T+N 
Sbjct: 574 VDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 633

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING CR G  +   ++  ++  +GI P  +TY +L+  L K   + +A  L +  +  G
Sbjct: 634 LINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDG 693

Query: 181 MLPDIVMFNALIDGHCTNGNIER 203
            +P+   ++ L+        ++R
Sbjct: 694 FVPNDRTWSILLQSLVPQETLDR 716


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 173/316 (54%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P+   +   +SG+CK GR+ +A  + + M +NG+VP+ +TYN +I GY   G 
Sbjct: 164 MKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGR 223

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   ++ M K G  P   TYN LI+ L  ++K  EA+++L    ++G  P  +T+  
Sbjct: 224 MNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTN 282

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC       A  + ++M+    +  +  +  LI  L K++R+ EA +L     A G
Sbjct: 283 LINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANG 342

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+++ + ++IDG+C +G ++ A  +LK M+R    P+  TYN+LM+G  +  K+ +A 
Sbjct: 343 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 402

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M++ GI P+ I       TY  L+QG C   + D A  L   M   G+ PD++ Y
Sbjct: 403 ALLTKMQKDGIIPNVI-------TYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAY 455

Query: 301 FSLIEGIASVDKAAES 316
             L + +    +A E+
Sbjct: 456 AVLTDALCKAGRAEEA 471



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 171/344 (49%), Gaps = 34/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S   + D   +G  ++ + K+ RL+EA  +L ++  NGLVP  +TY ++IDGYC  G 
Sbjct: 303 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M + G  P A TYN L++ L+ ++K+ +A  +L +M + GI+P+ ITY  
Sbjct: 363 VDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTT 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C   +   AF L + M   G++P    Y  L   L K  R   A++ +   + KG
Sbjct: 423 LLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR---AEEAYSFIVRKG 479

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +    V +  LIDG    GN + A +L++ M      PD  TY+ L+H  C+Q ++ EA 
Sbjct: 480 VALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEAL 539

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +LDQM  RGIK    ++                             P+  TY   I   
Sbjct: 540 PILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSY 599

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
           CK    + AE+L+ +M  +G+ PD  TY  LI+G   +  +D+A
Sbjct: 600 CKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 643



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 157/316 (49%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY + + G+C + + EEA  +L    + G  PT VT+  LI+GYC    
Sbjct: 234 MEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 292

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A   +++M+          +  LI+ L+ + ++ EA ++L E+   G+VP+ ITY  
Sbjct: 293 FDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTS 352

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G    A  +   M   G QP   TY SL++ L K  ++ +A  L       G
Sbjct: 353 IIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDG 412

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+++ +  L+ G C   + + AF L + M++  + PDE  Y  L    C+ G+ EEA 
Sbjct: 413 IIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 472

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +    R+G+         T++ Y  LI G  K    D A  L+  M+ +G TPD  TY
Sbjct: 473 SFI---VRKGVA-------LTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTY 522

Query: 301 FSLIEGIASVDKAAES 316
             L+  +    +  E+
Sbjct: 523 SVLLHALCKQKRLNEA 538



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 163/321 (50%), Gaps = 26/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++PD + Y      +CK GR EEA   + +    G+  T V Y TLIDG+   GN
Sbjct: 443 MEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGN 499

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +  + M+ +G  P + TY++L+H L  ++++ EA  +L +M  +GI      Y I
Sbjct: 500 TDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTI 559

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   R G    A  +++EM   G +P+  TYT  I    K+ R+ +A+ L      +G
Sbjct: 560 LIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREG 619

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH------------ 228
           + PD+V +N LIDG    G I+RAFS LK M      P+  TY  L+             
Sbjct: 620 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 679

Query: 229 ----GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
               G     +++   +LL++M + G+       NPT  TY++LI G CK    + A  L
Sbjct: 680 VDTSGMWNLIELDITWQLLERMVKHGL-------NPTVTTYSSLIAGFCKAGRLEEACLL 732

Query: 285 LREMVSKGITPDDNTYFSLIE 305
           L  M  KG++P+++ Y  LI+
Sbjct: 733 LDHMCGKGLSPNEDIYTLLIK 753



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 166/360 (46%), Gaps = 47/360 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G QP+++TY S + G+ K+ +L +A  +L +M+++G++P  +TY TL+ G C++ +
Sbjct: 373 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHD 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   + M + G+ P    Y +L   L    K   A++    +  KG+    + Y  
Sbjct: 433 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALC---KAGRAEEAYSFIVRKGVALTKVYYTT 489

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN   A +L + MI +G  P   TY+ L+  L KQ R+ EA  + +    +G
Sbjct: 490 LIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRG 549

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   I  +  LID     G  + A  +  EM      P   TY   ++  C++G++E+A 
Sbjct: 550 IKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE 609

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+ +M+R G+ PD +++N                            P   TY  L++ L
Sbjct: 610 DLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHL 669

Query: 273 CKNQ----------------EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K                  E D+  +LL  MV  G+ P   TY SLI G     +  E+
Sbjct: 670 LKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEA 729



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 154/339 (45%), Gaps = 43/339 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+ TY + +   CKEG L  A R    + E GL P   T N L+ GYC  G L  A
Sbjct: 63  GLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 122

Query: 65  FSF----------RDE-------------------------MVKQGIMPTASTYNLLIHE 89
                        R+E                         M + G  P    +  LI  
Sbjct: 123 CWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISG 182

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
           L    ++ +A  +   M + G+VP  +TYN +I GY + G    A  + + M   G  P 
Sbjct: 183 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPD 242

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY +LI+ L  Q +  EA++L  N + +G  P +V F  LI+G+C     + A  +  
Sbjct: 243 DWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKN 301

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           +M   K   D   +  L++   ++ +++EA+ LL+++   G+ P+ I       TY ++I
Sbjct: 302 KMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVI-------TYTSII 354

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G CK+ + D+A E+L+ M   G  P+  TY SL+ G+ 
Sbjct: 355 DGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 393



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            + P  Y +   +  + +    E   R+  Q+ ++GL+P  VTYNT+I  YC +G+L  A
Sbjct: 30  ALSPKCYNFA--LRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTA 87

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             +   +++ G+ P   T N L+       ++ +A  +   M   G   +  +Y ILI G
Sbjct: 88  HRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQG 147

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     +KA  L   M   G  P +  +T LI  L K  R+ +A  LF+     G++P 
Sbjct: 148 LCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPS 207

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +NA+I G+   G +  A  + + M++   HPD+ TYNTL++G C Q K EEA  LL+
Sbjct: 208 VMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLN 266

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
              + G       F PT +T+  LI G C  ++ D A  +  +M+S     D   +  LI
Sbjct: 267 NAVKEG-------FTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLI 319

Query: 305 EGIASVDKAAES 316
             +   D+  E+
Sbjct: 320 NSLIKKDRLKEA 331



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 147/351 (41%), Gaps = 58/351 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDSYTY   +  +CK+ RL EA  +L+QM   G+  T   Y  LID    +G 
Sbjct: 510 MIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 569

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EM   G  P+A+TY + I+    E ++ +A+D++ +M  +G+ PD +TYNI
Sbjct: 570 HDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNI 629

Query: 121 LINGYCRCGNAKKAFS-------------------------------------------- 136
           LI+G    G   +AFS                                            
Sbjct: 630 LIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLI 689

Query: 137 -------LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                  L + M+  G+ PT+ TY+SLI    K  R+ EA  L ++   KG+ P+  ++ 
Sbjct: 690 ELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYT 749

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI   C     E+A S +  M      P   +Y  L+ G C +G  E+ + L   +   
Sbjct: 750 LLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLEL 809

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           G   D ++       +  L  GL K    D+  ++L  M  +       TY
Sbjct: 810 GYNHDEVA-------WKILNDGLLKAGYVDICFQMLSIMEKRYCCISSQTY 853



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 64/282 (22%)

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           R   +A   ++  G   +      YN  +    R    +    ++ +++  G+ P  +TY
Sbjct: 12  RVSADAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTY 71

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
            ++I    K+  +  A + F   L  G+ P+    NAL+ G+C  G + +A  L   M  
Sbjct: 72  NTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPL 131

Query: 214 MKVHPDEVTYNTLMH-----------------------------------GRCRQGKVEE 238
           M    +E +Y  L+                                    G C+ G+V +
Sbjct: 132 MGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGD 191

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           AR L D M + G+ P  +++N                            P   TYN LI 
Sbjct: 192 ARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIY 251

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           GLC +Q+ + AEELL   V +G TP   T+ +LI G    +K
Sbjct: 252 GLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 292



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 35/158 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM------------------------ 36
           M   G+ P   TY S ++G CK GRLEEA  +L+ M                        
Sbjct: 701 MVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKF 760

Query: 37  -----------KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                       E G  P   +Y  L+ G CN+G+ E   S   ++++ G       + +
Sbjct: 761 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI 820

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           L   LL    +     ML  M ++     S TY ++ N
Sbjct: 821 LNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYALVTN 858



 Score = 41.2 bits (95), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP   +Y   V G+C EG  E+   +   + E G     V +  L DG    G 
Sbjct: 771 MSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGY 830

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +++ F     M K+    ++ TY L+ +++
Sbjct: 831 VDICFQMLSIMEKRYCCISSQTYALVTNKM 860


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 176/336 (52%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   PD  TY   +   CK    ++A ++L++M++ G  P  VTYN +++G C +G 
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F   +   G  P   +YN+++  L    +  +A++++ EMG+KG  P+ +T+N+
Sbjct: 118 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 177

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR G  + A  + +++   G  P  L+Y  L+    KQ +M +A    +  +++G
Sbjct: 178 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 237

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N L+   C +G ++ A  LL ++      P  ++YNT++ G  + GK +EA 
Sbjct: 238 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 297

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL++M  +G++PD I+++                            P  + YNA+I GL
Sbjct: 298 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 357

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK +E   A +L   M+  G  P+++TY  LIEG+A
Sbjct: 358 CKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 393



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 165/311 (53%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+PD+YTY + + G+C  GR   A  +L++M     VP  VTY  L++  C +   + A 
Sbjct: 28  VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 87

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM  +G  P   TYN++++ +  E ++ +A + LK +   G  P++++YNI++ G 
Sbjct: 88  KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C     + A  L  EM  KG  P ++T+  LI  L ++  +  A ++ E     G  P+ 
Sbjct: 148 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 207

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N L+   C    +++A + L  M     +PD V+YNTL+   CR G+V+ A  LL Q
Sbjct: 208 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 267

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +K +G  P  IS       YN +I GL K  +   A ELL EMVSKG+ PD  TY ++  
Sbjct: 268 LKDKGCAPVLIS-------YNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 320

Query: 306 GIASVDKAAES 316
           G+   D+  ++
Sbjct: 321 GLCREDRIEDA 331



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 162/305 (53%), Gaps = 10/305 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y + V+G C  G+L+ A R++ +M    + P A TYNTLI G C +G    A +  DEM
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEM 58

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           +++  +P   TY +L+          +A  +L EM +KG  PD +TYN+++NG C+ G  
Sbjct: 59  LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
             A      +   G +P  ++Y  ++  L    R  +A++L      KG  P++V FN L
Sbjct: 119 DDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNML 178

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I   C  G +E A  +L+++ +    P+ ++YN L+H  C+Q K+++A   LD M  RG 
Sbjct: 179 ISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 238

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            PD +S       YN L+  LC++ E D+A ELL ++  KG  P   +Y ++I+G+    
Sbjct: 239 YPDIVS-------YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAG 291

Query: 312 KAAES 316
           K  E+
Sbjct: 292 KTKEA 296



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 146/292 (50%), Gaps = 7/292 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +P++ +Y   + G+C   R E+A  ++ +M + G  P  VT+N LI   C KG 
Sbjct: 128 LPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGL 187

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +++ K G  P + +YN L+H    ++KM +A   L  M  +G  PD ++YN 
Sbjct: 188 VEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT 247

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   CR G    A  L  ++  KG  P +++Y ++I  L+K  +  EA +L    ++KG
Sbjct: 248 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 307

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ +  G C    IE A     ++  M + P+ V YN ++ G C++ +   A 
Sbjct: 308 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 367

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            L   M   G  P+         TY  LI+GL        A +LL E+ S+ 
Sbjct: 368 DLFAYMIGNGCMPNES-------TYTILIEGLAYEGLIKEARDLLDELCSRA 412



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 74/151 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K +G  P   +Y + + G+ K G+ +EA  +L +M   GL P  +TY+T+  G C +  
Sbjct: 268 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     ++   GI P    YN +I  L   R+   A D+   M   G +P+  TY I
Sbjct: 328 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTI 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
           LI G    G  K+A  L DE+  +  +  +L
Sbjct: 388 LIEGLAYEGLIKEARDLLDELCSRAGEEILL 418



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 34/126 (26%)

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------------------- 259
           + YN ++ G C  G+++ ARRL+ +M    ++PD  ++N                     
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 260 -------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS--- 309
                  P  +TY  L++  CK      A +LL EM  KG TPD  TY  ++ GI     
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 310 VDKAAE 315
           VD A E
Sbjct: 118 VDDAIE 123


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 178/307 (57%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+  +YGS ++ +CK+ +L +A  +L  M   G+ P A  YN LI+  C+   
Sbjct: 456 MDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSK 515

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF F DEM++ GI  T  TYN LI+ L    ++ +A+D+  +M  KG  PD ITYN 
Sbjct: 516 LKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNS 575

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY +  N +K   L+D+M   GI+PT+ T+  LI+   K+  ++  D++F+  L   
Sbjct: 576 LISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEG-VVTMDKMFQEMLQMD 634

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD  ++N +I  +  +GN+ +A SL ++M    V  D+VTYN+L+    R  +V E +
Sbjct: 635 LVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIK 694

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D MK +G+ P          TYN LI+GLC  ++ + A    REMV +G+  + +  
Sbjct: 695 HLVDDMKAKGLVPKVD-------TYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMC 747

Query: 301 FSLIEGI 307
           + LI G+
Sbjct: 748 YQLISGL 754



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 178/312 (57%), Gaps = 12/312 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++ D  TY   ++G+C+ GR+E+A  +L ++ ENG+ P+ ++YN L++ YC +G+++ A 
Sbjct: 321 IRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAI 380

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              ++M ++G+ P   T+N +I +     ++  A+  ++ M EKG+ P   TYN LINGY
Sbjct: 381 LTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGY 440

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + G+  + F   DEM   GI+P +++Y SLI  L K  ++I+A+ +  + + +G+ P+ 
Sbjct: 441 GQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNA 500

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            ++N LI+  C+   ++ AF    EM +  +    VTYNTL++G  R G+V++A  L  Q
Sbjct: 501 EIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQ 560

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI- 304
           M  +G  PD I       TYN+LI G  K+       EL  +M   GI P   T+  LI 
Sbjct: 561 MAGKGCNPDVI-------TYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIY 613

Query: 305 ----EGIASVDK 312
               EG+ ++DK
Sbjct: 614 ACRKEGVVTMDK 625



 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 177/344 (51%), Gaps = 41/344 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++P+  T+ + +S  C+ G ++ A   + +M E G+ PT  TYN+LI+GY  KG+
Sbjct: 386 MEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGH 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               F F DEM K GI P   +Y  LI+ L  +RK+++A+ +L +M  +G+ P++  YN+
Sbjct: 446 FVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNM 505

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C     K AF   DEMI  GI  T++TY +LI  L +  R+ +A+ LF     KG
Sbjct: 506 LIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKG 565

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSL--------------------------------- 207
             PD++ +N+LI G+  + N ++   L                                 
Sbjct: 566 CNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMDK 625

Query: 208 -LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
             +EM +M + PD+  YN +++     G V +A  L  QM  +G+  D       ++TYN
Sbjct: 626 MFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCD-------KVTYN 678

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           +LI    +++     + L+ +M +KG+ P  +TY  LI+G+  +
Sbjct: 679 SLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDL 722



 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 175/344 (50%), Gaps = 35/344 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P  + Y   + G+CK  R+++A ++ ++M +  +VP  VTYNTLIDGYC  G 
Sbjct: 183 MVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGG 242

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP------- 113
           +E A  F++ M +Q +     TYN L++ L    ++ +A ++L EM   G +P       
Sbjct: 243 IEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFV 302

Query: 114 ---------------------DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
                                D  TY IL+NG CR G  +KA  +  +++  G+ P+ ++
Sbjct: 303 FDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKIS 362

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y  L+    ++  + +A    E    +G+ P+ + FN +I   C  G ++ A + ++ M 
Sbjct: 363 YNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMV 422

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              V P   TYN+L++G  ++G        LD+M + GIKP+ IS       Y +LI  L
Sbjct: 423 EKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVIS-------YGSLINCL 475

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK+++   AE +L +M+ +G++P+   Y  LIE   S+ K  ++
Sbjct: 476 CKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDA 519



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 163/334 (48%), Gaps = 35/334 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P + +    +  +      E+   +   + ++G  P AV Y   +       +
Sbjct: 113 MRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKD 172

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+  F     MVK G+ P+   YNL++  L   R++ +A  +  EM ++ +VP+++TYN 
Sbjct: 173 LDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNT 232

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  ++A    + M  + ++  ++TY SL+  L    R+ +A ++       G
Sbjct: 233 LIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSG 292

Query: 181 MLP----------------DIVMFNA------------LIDGHCTNGNIERAFSLLKEMD 212
            LP                D  +F+             L++G C  G IE+A  +L ++ 
Sbjct: 293 FLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLV 352

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              V P +++YN L++  C++G V++A    +QM+ RG++P+       R+T+N +I   
Sbjct: 353 ENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPN-------RITFNTVISKF 405

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           C+  E D AE  +R MV KG++P   TY SLI G
Sbjct: 406 CETGEVDHAETWVRRMVEKGVSPTVETYNSLING 439



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 125/251 (49%), Gaps = 1/251 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+     TY + ++G+ + GR+++A  +  QM   G  P  +TYN+LI GY    N
Sbjct: 526 MIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVN 585

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +      D+M   GI PT  T++ LI+    E  +V  D M +EM +  +VPD   YN 
Sbjct: 586 TQKCLELYDKMKILGIKPTVGTFHPLIYACRKE-GVVTMDKMFQEMLQMDLVPDQFVYNE 644

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  Y   GN  KA SLH +M+ +G+    +TY SLI    +  R+ E   L ++  AKG
Sbjct: 645 MIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKG 704

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P +  +N LI G C   +   A+   +EM    +  +      L+ G   +G + EA+
Sbjct: 705 LVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQ 764

Query: 241 RLLDQMKRRGI 251
            +  ++   G+
Sbjct: 765 IVSSELSIGGL 775



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 21/265 (7%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M K G +P+  + N L+  L+  R   +   +  ++ + G  PD++ Y  
Sbjct: 103 LDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGK 162

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +       +  K F L   M+  G+ P++  Y  ++  L K  R+ +A +LF+  + + 
Sbjct: 163 AVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRN 222

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+P+ V +N LIDG+C  G IE A    + M    V  + VTYN+L++G C  G+V++AR
Sbjct: 223 MVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAR 282

Query: 241 RLLDQMKRRGIKP---------DHIS-------FNPTRL-----TYNALIQGLCKNQEGD 279
            +L +M+  G  P         DH +       F+   +     TY  L+ GLC+    +
Sbjct: 283 EVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIE 342

Query: 280 LAEELLREMVSKGITPDDNTYFSLI 304
            AEE+L ++V  G+TP   +Y  L+
Sbjct: 343 KAEEVLAKLVENGVTPSKISYNILV 367



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 9/186 (4%)

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            K AFS   E+ H  +     +  +L+++ S    + EA  L+      G +P     N 
Sbjct: 70  TKTAFSSLSEL-HAHVSKPFFS-DNLLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNR 127

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           L+     + + E+  ++  ++      PD V Y   +        +++   L+  M + G
Sbjct: 128 LLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDG 187

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           +        P+   YN ++ GLCK +    A +L  EM+ + + P+  TY +LI+G   V
Sbjct: 188 M-------GPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKV 240

Query: 311 DKAAES 316
               E+
Sbjct: 241 GGIEEA 246


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 163/303 (53%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + PD  TY + + G+CK+ +++EA++ L +M   G +P   TYNT+IDGYC +  L+ A 
Sbjct: 180 IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEAT 239

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               + + +G +P   TY  LI+ L  E  +  A ++  E   K + PD + YN L+ G 
Sbjct: 240 ELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGL 299

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR G    A  + +EM+  G  P + TY  +I  L K   + +A  +  + + KG LPD+
Sbjct: 300 CRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDV 359

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             FN +IDG+C    ++ A  L++ M    + PD +TYN++++G C+ GK +E     ++
Sbjct: 360 FTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEE 419

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G +P+ I       TYN LI+  CK  + + A  ++  M   G+ PD  ++ +LI 
Sbjct: 420 MILKGCRPNAI-------TYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIH 472

Query: 306 GIA 308
           G  
Sbjct: 473 GFC 475



 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 172/314 (54%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+  + +T   ++ G+C+ GRLEEA  ++E M +  + P  VTYNTL+ G C    ++ 
Sbjct: 144 RGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQE 202

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +   M+ QG +P   TYN +I        + EA ++LK+   KG VPD +TY  LIN
Sbjct: 203 AAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLIN 262

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G+ ++A  L +E   K ++P ++ Y SL+  L +Q  ++ A Q+    +  G  P
Sbjct: 263 GLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHP 322

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I+G C  GNI  A  ++ +       PD  T+NT++ G C++ K++ A +L+
Sbjct: 323 DIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLV 382

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   GI PD I       TYN+++ GLCK  +     E   EM+ KG  P+  TY  L
Sbjct: 383 ERMWMYGIAPDAI-------TYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNIL 435

Query: 304 IEGIASVDKAAESS 317
           IE    +++  E+S
Sbjct: 436 IENFCKINQLEEAS 449



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 175/351 (49%), Gaps = 45/351 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD +TY + + G CK   L+EA+ +L+     G VP  VTY +LI+G C +G+
Sbjct: 210 MMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGD 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +E   + + P    YN L+  L  +  ++ A  ++ EM E G  PD  TYNI
Sbjct: 270 VERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNI 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ GN   A  + ++ I KG  P + T+ ++I    K+ ++  A QL E     G
Sbjct: 330 VINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N++++G C  G  +      +EM      P+ +TYN L+   C+  ++EEA 
Sbjct: 390 IAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEAS 449

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD--------------------- 279
            ++ +M + G+ PD ISF       N LI G C+N + D                     
Sbjct: 450 GVIVRMSQDGLVPDTISF-------NTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTF 502

Query: 280 --------------LAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
                         +AE++  EM+SKG  PD  TY  L++G    A+VD+A
Sbjct: 503 NILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRA 553



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 166/315 (52%), Gaps = 7/315 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           +++ ++PD   Y S V G+C++G +  A +++ +M E+G  P   TYN +I+G C  GN+
Sbjct: 281 QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNI 340

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    ++ + +G +P   T+N +I       K+  A  +++ M   GI PD+ITYN +
Sbjct: 341 SDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSV 400

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +NG C+ G AK+     +EMI KG +P  +TY  LI    K N++ EA  +       G+
Sbjct: 401 LNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGL 460

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD + FN LI G C NG+++ A+ L +++D         T+N L+     +  ++ A +
Sbjct: 461 VPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEK 520

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +  +M  +G KPD         TY  L+ G CK    D A   L EMVSKG  P   T+ 
Sbjct: 521 IFGEMISKGYKPD-------LYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFG 573

Query: 302 SLIEGIASVDKAAES 316
            ++  +A   + +E+
Sbjct: 574 RVLNSLAMNHRVSEA 588



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 175/381 (45%), Gaps = 62/381 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV PD+ T+   +   C  GR   A R+L  + E G     + Y T++ G    G+
Sbjct: 36  MLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGH 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---------- 110
              A    DEM+++ + P  +T+N ++H L  +  ++E+  +L ++ ++G          
Sbjct: 96  GYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNI 155

Query: 111 ------------------------IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
                                   I PD +TYN L+ G C+    ++A      M+++G 
Sbjct: 156 WIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGC 215

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P   TY ++I    K++ + EA +L ++ + KG +PD V + +LI+G C  G++ERA  
Sbjct: 216 IPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALE 275

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------- 259
           L  E     + PD V YN+L+ G CRQG +  A +++++M   G  PD  ++N       
Sbjct: 276 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLC 335

Query: 260 ---------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                                P   T+N +I G CK  + D A +L+  M   GI PD  
Sbjct: 336 KMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAI 395

Query: 299 TYFSLIEGIASVDKAAESSNS 319
           TY S++ G+    KA E + +
Sbjct: 396 TYNSVLNGLCKAGKAKEVNET 416



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 139/251 (55%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  PD +T+ + + G CK  +L+ A +++E+M   G+ P A+TYN++++G C  G  + 
Sbjct: 353 KGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKE 412

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                +EM+ +G  P A TYN+LI       ++ EA  ++  M + G+VPD+I++N LI+
Sbjct: 413 VNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIH 472

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+CR G+   A+ L  ++  KG   T  T+  LI   S +  M  A+++F   ++KG  P
Sbjct: 473 GFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKP 532

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+  +  L+DG C   N++RA+  L EM      P   T+  +++      +V EA  ++
Sbjct: 533 DLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAII 592

Query: 244 DQMKRRGIKPD 254
             M R G+ P+
Sbjct: 593 HIMVRMGVVPE 603



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 13/312 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD +TY   ++G+CK G + +A+ ++      G +P   T+NT+IDGYC +  
Sbjct: 315 MVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLK 374

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M   GI P A TYN +++ L    K  E ++  +EM  KG  P++ITYNI
Sbjct: 375 LDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNI 434

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+    ++A  +   M   G+ P  +++ +LI    +   +  A  LF+    KG
Sbjct: 435 LIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKG 494

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                  FN LI  + +  N++ A  +  EM      PD  TY  L+ G C+   V+ A 
Sbjct: 495 YSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAY 554

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M  +G       F P+  T+  ++  L  N     A  ++  MV  G+ P+    
Sbjct: 555 VHLAEMVSKG-------FVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPE---- 603

Query: 301 FSLIEGIASVDK 312
             +++ I S DK
Sbjct: 604 --VVDTILSTDK 613



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 40  GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99
           G  P A  YN ++D   N    + A      M+  G+ P A T+ + I    +  +   A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
             +L+ + E+G     + Y  ++ G    G+   A  L DEM+ + + P + T+ +++  
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L ++  ++E+  L    L +GM  +    N  I G C  G +E A +L++ MD   + PD
Sbjct: 125 LCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPD 183

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            VTYNTLM G C+  KV+EA + L +M  +G  PD         TYN +I G CK     
Sbjct: 184 VVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDD-------FTYNTIIDGYCKRDMLQ 236

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAESSN 318
            A ELL++ + KG  PD  TY SLI G+ +   V++A E  N
Sbjct: 237 EATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFN 278



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 157/347 (45%), Gaps = 41/347 (11%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P +  Y + +  +      ++A ++  +M   G+ P A T+   I  +C  G   +A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 + ++G       Y  ++  L       +A  +  EM  + + PD  T+N +++ 
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 125 YCRCGNAKKAFSLHDEMIHKG----------------------------------IQPTM 150
            C+ G+  ++ +L  +++ +G                                  I P +
Sbjct: 125 LCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDV 184

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           +TY +L+  L K +++ EA Q     + +G +PD   +N +IDG+C    ++ A  LLK+
Sbjct: 185 VTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKD 244

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
                  PD VTY +L++G C +G VE A  L ++ + + +KPD +        YN+L++
Sbjct: 245 AIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLV-------VYNSLVK 297

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           GLC+      A +++ EMV  G  PD  TY  +I G+  +   ++++
Sbjct: 298 GLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAA 344


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 173/332 (52%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  P   TY + + G+CK GR+ +A ++L+ M    L+P  V+YNTLI GY   GN
Sbjct: 286 MLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN 345

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF    E+  +G++P+  TYN LI  L     +  A  +  EM + G  PD  T+ I
Sbjct: 346 IGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTI 405

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+C+ GN   A  L DEM+++G+QP    Y + I    K     +A  + E  LA+G
Sbjct: 406 LVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARG 465

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N  IDG    GN++ A  L+K+M    + PD VTY +++H     G + +AR
Sbjct: 466 FPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKAR 525

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            +  +M  +GI P  +++                            +P  +TYNALI GL
Sbjct: 526 AVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGL 585

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           CK ++ D A +   EM +KGI+P+  TY  LI
Sbjct: 586 CKVRKMDQAYKFFTEMQAKGISPNKYTYTILI 617



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 174/330 (52%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P   TY + +   CK+G+++EA ++L QM++ G +P  VTYN L++G  + G LE A
Sbjct: 185 GIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQA 244

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM++ G+  +A TY+ LI     + ++ EA  + +EM  +G VP  +TYN ++ G
Sbjct: 245 KELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYG 304

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A  L D M++K + P +++Y +LI+  ++   + EA  LF     +G++P 
Sbjct: 305 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPS 364

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LIDG C  G+++ A  L  EM +    PD  T+  L+ G C+ G +  A+ L D
Sbjct: 365 VVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFD 424

Query: 245 QMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGLCKNQ 276
           +M  RG++PD  +                            F P  +TYN  I GL K  
Sbjct: 425 EMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLG 484

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               A EL+++M+  G+ PD  TY S+I  
Sbjct: 485 NLKEASELVKKMLYNGLVPDHVTYTSIIHA 514



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 173/307 (56%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMC-KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M S+G+ PD       +  +  ++  ++ A  +   M E G+ PT VTYNT++D +C +G
Sbjct: 145 MVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQG 204

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A     +M K G +P   TYN+L++ L    ++ +A ++++EM   G+   + TY+
Sbjct: 205 KVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYD 264

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI GYC  G   +A  L +EM+ +G  PT++TY ++++ L K  R+ +A +L +  + K
Sbjct: 265 PLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNK 324

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++PD+V +N LI G+   GNI  AF L  E+    + P  VTYNTL+ G CR G ++ A
Sbjct: 325 NLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVA 384

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL D+M + G  PD         T+  L++G CK     +A+EL  EM+++G+ PD   
Sbjct: 385 MRLKDEMIKHGPDPD-------VFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFA 437

Query: 300 YFSLIEG 306
           Y + I G
Sbjct: 438 YITRIVG 444



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 166/308 (53%), Gaps = 13/308 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG+ P   TY + + G+C+ G L+ A R+ ++M ++G  P   T+  L+ G+C  GN
Sbjct: 356 LRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGN 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM---VEADDMLKEMGEKGIVPDSIT 117
           L MA    DEM+ +G+ P    Y   I  ++ E K+    +A  M +EM  +G  PD IT
Sbjct: 416 LPMAKELFDEMLNRGLQPDRFAY---ITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 472

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN+ I+G  + GN K+A  L  +M++ G+ P  +TYTS+I        + +A  +F   L
Sbjct: 473 YNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEML 532

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           +KG+ P +V +  LI  +   G ++ A     EM    VHP+ +TYN L++G C+  K++
Sbjct: 533 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMD 592

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A +   +M+ +GI P+       + TY  LI   C       A  L ++M+ + I PD 
Sbjct: 593 QAYKFFTEMQAKGISPN-------KYTYTILINENCNLGHWQEALRLYKDMLDREIQPDS 645

Query: 298 NTYFSLIE 305
            T+ +L++
Sbjct: 646 CTHSALLK 653



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 7/284 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD +T+   V G CK G L  A  + ++M   GL P    Y T I G    G+
Sbjct: 391 MIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGD 450

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF  ++EM+ +G  P   TYN+ I  L     + EA +++K+M   G+VPD +TY  
Sbjct: 451 PSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTS 510

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +   G+ +KA ++  EM+ KGI P+++TYT LI   + + R+  A   F     KG
Sbjct: 511 IIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKG 570

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +NALI+G C    +++A+    EM    + P++ TY  L++  C  G  +EA 
Sbjct: 571 VHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEAL 630

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           RL   M  R I+PD         T++AL++ L K+ +  +   L
Sbjct: 631 RLYKDMLDREIQPDSC-------THSALLKHLNKDYKSHVVRHL 667



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 119/248 (47%), Gaps = 46/248 (18%)

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ---PTMLTYTSLIFVLSKQN 164
           + G     +TY ++++   R G  + A+ + ++++   ++     +L    L+++ +K++
Sbjct: 74  QTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKS 133

Query: 165 RMIEADQLFENFLAKGMLPD------------------------------------IVMF 188
            + +   +F   ++KGMLPD                                    +V +
Sbjct: 134 MLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTY 193

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N ++D  C  G ++ A  LL +M +M   P++VTYN L++G    G++E+A+ L+ +M R
Sbjct: 194 NTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLR 253

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G++    +++P       LI+G C+  + D A  L  EM+S+G  P   TY +++ G+ 
Sbjct: 254 LGLEVSAYTYDP-------LIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLC 306

Query: 309 SVDKAAES 316
              + +++
Sbjct: 307 KWGRVSDA 314


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 176/317 (55%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G +PD  TY   + G CK GRL+EA R L+++   G  P  +++N ++   C+ G 
Sbjct: 242 MRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGR 301

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M+++G +P+  T+N+LI+ L  +  + +A ++L+ M + G  P+S ++N 
Sbjct: 302 WMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNP 361

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C      +A    + M+ +G  P ++TY  L+  L K  ++ +A  +     +KG
Sbjct: 362 LIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG 421

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  E A  LL+EM    + PD +T  +++ G  R+GKV EA 
Sbjct: 422 CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAM 481

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +    +KR  I+P+          YN++I GLCK+Q+  LA + L +MV+KG  P + TY
Sbjct: 482 KFFHYLKRFAIRPNA-------FIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATY 534

Query: 301 FSLIEGIASVDKAAESS 317
            +LI+GI     A ++S
Sbjct: 535 TTLIKGITYEGLAEDAS 551



 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 160/312 (51%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P++ TY + +  +C  G+L++A ++L +  ++   P  VT   LID  C +  +  A
Sbjct: 176 GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQA 235

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM  +G  P   TYN+LI       ++ EA   LK++   G  PD I++N+++  
Sbjct: 236 MKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRS 295

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G    A  L   M+ KG  P+++T+  LI  L ++  + +A  + E     G  P+
Sbjct: 296 LCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPN 355

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              FN LI G C    I+RA   L+ M     +PD VTYN L+   C+ GKV++A  +L 
Sbjct: 356 SRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILS 415

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           Q+  +G  P  IS       YN +I GL K  + +LA ELL EM  KG+ PD  T  S++
Sbjct: 416 QLSSKGCSPSLIS-------YNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVV 468

Query: 305 EGIASVDKAAES 316
            G++   K  E+
Sbjct: 469 GGLSREGKVREA 480



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 140/251 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+   ++ +C++G L +A  +LE M ++G  P + ++N LI G+CN   
Sbjct: 312 MLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKG 371

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + + MV +G  P   TYN+L+  L  + K+ +A  +L ++  KG  P  I+YN 
Sbjct: 372 IDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNT 431

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G A+ A  L +EM +KG++P ++T TS++  LS++ ++ EA + F       
Sbjct: 432 VIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFA 491

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++N++I G C +     A   L +M      P E TY TL+ G   +G  E+A 
Sbjct: 492 IRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDAS 551

Query: 241 RLLDQMKRRGI 251
           +L +++  RG+
Sbjct: 552 KLSNELYSRGL 562



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 132/290 (45%), Gaps = 38/290 (13%)

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G LE    F + M  +G  P       LI E     +   A  ++  + E G V D  +Y
Sbjct: 93  GELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSY 152

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N+LI+GYC+ G  ++A  + D M   G+ P   TY +++  L  + ++ +A Q+    L 
Sbjct: 153 NVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQ 209

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
               PD+V    LID  C    + +A  L  EM      PD VTYN L+ G C+ G+++E
Sbjct: 210 SKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDE 269

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           A R L ++   G +PD IS N                            P+ +T+N LI 
Sbjct: 270 AIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILIN 329

Query: 271 GLCKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
            LC  Q+G L + L  L  M   G TP+  ++  LI+G  +   +D+A E
Sbjct: 330 FLC--QKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIE 377



 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 95/182 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY   ++ +CK+G++++A  +L Q+   G  P+ ++YNT+IDG    G 
Sbjct: 382 MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGK 441

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E+A    +EM  +G+ P   T   ++  L  E K+ EA      +    I P++  YN 
Sbjct: 442 AELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNS 501

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C+      A     +M+ KG +PT  TYT+LI  ++ +    +A +L     ++G
Sbjct: 502 IITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561

Query: 181 ML 182
           ++
Sbjct: 562 LV 563



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PD  T  S V G+ +EG++ EA +    +K   + P A  YN++I G C    
Sbjct: 452 MCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQ 511

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A  F  +MV +G  PT +TY  LI  +  E    +A  +  E+  +G+V  S+   +
Sbjct: 512 TSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLVKRSLVEKV 571



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 31/177 (17%)

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L +   + E  +  E    KG  PD++   ALI   C  G  + A  ++  ++      D
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------------- 259
             +YN L+ G C+ G++EEA R+LD+M   G+ P+  +++                    
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 260 --------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                   P  +T   LI   CK      A +L  EM +KG  PD  TY  LI+G  
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFC 262


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD  TY S +SG+C  GR  +A+RM+  M +  + P   T+N LID    +G 
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGR 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F +EM+++ + P   TY+LLI+ L M  ++ EA++M   M  KG  PD +TY+I
Sbjct: 272 VSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+    +    L  EM  +G+    +TYT LI    +  ++  A+++F   +  G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N L+ G C NG IE+A  +L +M +  +  D VTYN ++ G C+ G+V +A 
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAW 451

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            +   +  +G+ PD         TY  ++ GL K      A+ L R+M   GI P++
Sbjct: 452 DIYCSLNCQGLMPDI-------WTYTTMMLGLYKKGLRREADALFRKMKEDGILPNE 501



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P   T+GS ++G C+  R+ +A  M +QM   G  P  V YNT+IDG C    
Sbjct: 142 MIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQ 201

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M K GI P   TYN LI  L    +  +A  M+  M ++ I PD  T+N 
Sbjct: 202 VDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNA 261

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G   +A   ++EMI + + P ++TY+ LI+ L   +R+ EA+++F   ++KG
Sbjct: 262 LIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG 321

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V ++ LI+G+C +  +E    L  EM +  V  + VTY  L+ G CR GK+  A 
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAE 381

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M   G+ P+ I       TYN L+ GLC N + + A  +L +M   G+  D  TY
Sbjct: 382 EIFRRMVFCGVHPNII-------TYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTY 434

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+    + A++ +
Sbjct: 435 NIIIRGMCKAGEVADAWD 452



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 159/308 (51%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  +  T    ++  C+  +L  A   L +M + G  P+ VT+ +L++G+C    
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDR 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+MV  G  P    YN +I  L   +++  A D+L  M + GI PD +TYN 
Sbjct: 167 VYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G    A  +   M  + I P + T+ +LI    K+ R+ EA++ +E  + + 
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRS 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++ LI G C    ++ A  +   M      PD VTY+ L++G C+  KVE   
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M +RG+  + +       TY  LIQG C+  + ++AEE+ R MV  G+ P+  TY
Sbjct: 347 KLFCEMSQRGVVRNTV-------TYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITY 399

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 400 NVLLHGLC 407



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 28/272 (10%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
            MV+   +P+ + ++ L+  +   +K      + ++M   GI  +  T NIL+N +CRC 
Sbjct: 71  HMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCS 130

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
               A S   +MI  G +P+++T+ SL+    + +R+ +A  +F+  +  G  P++V++N
Sbjct: 131 QLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYN 190

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            +IDG C +  ++ A  LL  M++  + PD VTYN+L+ G C  G+  +A R++  M +R
Sbjct: 191 TIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKR 250

Query: 250 GIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLA 281
            I PD  +FN                            P  +TY+ LI GLC     D A
Sbjct: 251 EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA 310

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           EE+   MVSKG  PD  TY  LI G     K 
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 27/216 (12%)

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQ--------------------PTMLTYTSLIFVLS 161
           I G+C    A    S + EM+  GI+                    P++  ++ L+  +S
Sbjct: 33  ICGFCFSRRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAIS 92

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  +      L+E     G+  ++   N L++  C    +  A S L +M ++   P  V
Sbjct: 93  KMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIV 152

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           T+ +L++G CR  +V +A  + DQM   G KP+ +        YN +I GLCK+++ D A
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVV-------IYNTIIDGLCKSKQVDNA 205

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            +LL  M   GI PD  TY SLI G+ S  + ++++
Sbjct: 206 LDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 161/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P   T+ + ++G+C EG++++   + + M   GL P   TYN +I+     G    A
Sbjct: 127 GLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEA 186

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F  +M K G +P    Y+ LI    +  +M EA  +   M  KG  P+  TY  L+NG
Sbjct: 187 LGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNG 246

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+    ++A  L DE + KG+ P ++T+T++I  L +  R + A QLF    A G  P+
Sbjct: 247 YCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPN 306

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ +  L+DG C +GN+E AF+L +EM R  V P+ V Y  L+   C+ GK+++ + L  
Sbjct: 307 IMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFS 366

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++   G+KP+         TY AL+  LCK      A +L R+M   G TPD   Y  +I
Sbjct: 367 RLIDEGLKPN-------VYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVII 419

Query: 305 EG 306
           +G
Sbjct: 420 QG 421



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+QP+ YTY   ++ + K G+  EA   L+QM++ G VP  V Y+TLIDGYC +G 
Sbjct: 158 MLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQ 217

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  D MV +G  P   TY  L++      ++ EA  +L E   KG+VPD +T+  
Sbjct: 218 MDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTT 277

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G CR G    A  L   +   G  P ++TY  L+  L K   + EA  LF+      
Sbjct: 278 IISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRST 337

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V++  LID  C  G I+    L   +    + P+  TY  L+   C++G + EA 
Sbjct: 338 VKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAH 397

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           +L  +M+  G  PD       +  YN +IQG  ++++  +A +L+ EMV++G + D  T
Sbjct: 398 KLFRKMEEDGCTPD-------KCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT 449



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
           +P  + ++ L +   R G+ +    L  E+   GI+  + + + LI      +R+     
Sbjct: 59  LPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLS 118

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           +    L  G+ P IV F  L++G C  G +++   L  +M    + P+  TYN +++   
Sbjct: 119 VLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLS 178

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + GK  EA   L QM++ G  P+ ++       Y+ LI G C   + D A  +   MVSK
Sbjct: 179 KSGKANEALGFLKQMEKVGCVPNVVN-------YSTLIDGYCLRGQMDEARSVFDLMVSK 231

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G TP+  TY SL+ G   +++  E+
Sbjct: 232 GCTPNVYTYTSLMNGYCKIERIEEA 256



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P+ YTY + V  +CKEG + EA ++  +M+E+G  P    YN +I G+    +  MA
Sbjct: 372 GLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMA 431

Query: 65  FSFRDEMVKQGIMPTASTYNLL 86
               +EMV +G    A+T  LL
Sbjct: 432 RQLVEEMVNRGFSADAATRALL 453



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   V+P+   Y   +  +CK G++++   +  ++ + GL P   TY  L+   C +G 
Sbjct: 333 MQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGL 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M + G  P    YN++I   L  +    A  +++EM  +G   D+ T  +
Sbjct: 393 IIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRAL 452

Query: 121 L 121
           L
Sbjct: 453 L 453


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 170/338 (50%), Gaps = 28/338 (8%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           + G   D +TY + V  + K  ++++A  ++E++  NG  PT  TYN L++G C  G LE
Sbjct: 158 TNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLE 217

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     ++V  G  P   TY  LI  L  E++  EA  + KEM  +G+V D++ Y  LI
Sbjct: 218 EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALI 277

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G  + G   +A S++  M  +G  P ++T +++I  L K  R+  A ++F++  A+G+ 
Sbjct: 278 RGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLA 337

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+ V+++ALI G C    ++ A  +L +M +    PD +TYN L+ G C+ G VE AR  
Sbjct: 338 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 397

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D+M   G KPD  ++N                            P  +TY  LI GLCK
Sbjct: 398 FDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCK 457

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            ++   A    + M  +G  PD   Y SL++G+    K
Sbjct: 458 RRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGK 495



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 160/302 (52%), Gaps = 8/302 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           PD  T+   ++G C     EEA  ++ +M+E+ G+ P+  T+N ++ G C  G +  A  
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +     G      TY  ++  L   +K+ +A  +++++   G  P   TYN L+NG C
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G  ++A  L  +++  G  P ++TYTSLI  L K+ R  EA +LF+    +G++ D V
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            + ALI G    G I +A S+ K M      PD VT +T++ G C+ G++  A R+   M
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSM 331

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + RG+ P+ +        Y+ALI GLCK ++ D A E+L +M     TPD  TY  LI+G
Sbjct: 332 EARGLAPNEV-------VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 384

Query: 307 IA 308
           + 
Sbjct: 385 LC 386



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 158/304 (51%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P   T+   + G+CK G++  A    E    NG      TY  ++D       ++ A
Sbjct: 125 GVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDA 184

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +  +++   G  PT +TYN L++ L    ++ EA D+L+++ + G  PD +TY  LI+G
Sbjct: 185 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 244

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +   + +A+ L  EM  +G+    + YT+LI  L +  ++ +A  +++   ++G +PD
Sbjct: 245 LGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPD 304

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V  + +IDG C  G I  A  + K M+   + P+EV Y+ L+HG C+  K++ A  +L 
Sbjct: 305 VVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLA 364

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QMK+    PD I       TYN LI GLCK+ + + A     EM+  G  PD  TY  L+
Sbjct: 365 QMKKAFCTPDTI-------TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILV 417

Query: 305 EGIA 308
            G  
Sbjct: 418 SGFC 421



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 9/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D+  Y + + G+ + G++ +AS + + M   G VP  VT +T+IDG C  G 
Sbjct: 261 MALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGR 320

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +G+ P    Y+ LIH L   RKM  A +ML +M +    PD+ITYNI
Sbjct: 321 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 380

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A +  DEM+  G +P + TY  L+    K      A  +F++  +  
Sbjct: 381 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSH 440

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +  LI G C    + +A    + M      PD   Y++L+ G C+ GK+E   
Sbjct: 441 CSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGC 500

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M+R G+     S   TRL ++     LCK    D A  L   +  +G+ P    Y
Sbjct: 501 MLFDEMERSGVAN---SQTRTRLIFH-----LCKANRVDEAVSLFNAIRKEGM-PHPYAY 551

Query: 301 FSLIEGI 307
            S+I  +
Sbjct: 552 NSIISTL 558



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 153/328 (46%), Gaps = 42/328 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + G  P   TY + ++G+CK GRLEEA  +L ++ +NG  P  VTY +LIDG   +  
Sbjct: 191 ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR 250

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM  +G++     Y  LI  LL   K+ +A  + K M  +G VPD +T + 
Sbjct: 251 SFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 310

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM-------------- 166
           +I+G C+ G    A  +   M  +G+ P  + Y++LI  L K  +M              
Sbjct: 311 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 370

Query: 167 --------------------IEADQ-LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                               +EA +  F+  L  G  PD+  +N L+ G C  GN + A 
Sbjct: 371 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAAC 430

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +  +M      P+ VTY TL+ G C++ ++ +A      MK RG  PD  SF      Y
Sbjct: 431 GVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPD--SF-----VY 483

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGI 293
           ++L+ GLCK+ + +    L  EM   G+
Sbjct: 484 SSLVDGLCKSGKLEGGCMLFDEMERSGV 511



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 8/245 (3%)

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G   +  T N L+      ++  EA ++LK       +PD  T+N+LI GYC     ++A
Sbjct: 54  GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEA 113

Query: 135 FSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           F++  EM    G+ P++ T+  ++  L K  +++ A   FE     G   DI  + A++D
Sbjct: 114 FAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVD 173

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
               N  I+ A +L++++      P   TYN L++G C+ G++EEA  LL ++   G  P
Sbjct: 174 WLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTP 233

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           D +       TY +LI GL K +    A +L +EM  +G+  D   Y +LI G+    K 
Sbjct: 234 DVV-------TYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKI 286

Query: 314 AESSN 318
            ++S+
Sbjct: 287 PQASS 291


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 166/304 (54%), Gaps = 7/304 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQP+   Y + +  MCK   + EA  +  +M   G+ P  VTYN LI G+C  G ++ A 
Sbjct: 208 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDAT 267

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              ++M+ + I P   T+N+L+     ER++ EA ++L  M ++GI PD  TYN L++ Y
Sbjct: 268 DLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRY 327

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C      KA  + + +  +G+ P + +Y+ +I    K  ++ EA  LF+      ++PD+
Sbjct: 328 CLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDV 387

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N+LIDG C  G I  A  L+ EM    V  D++TYN+++   C+  +V++A  LL +
Sbjct: 388 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK 447

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MK  GI+PD         TY  L+ GLCKN   + A  +  +++ KG   D N Y ++I+
Sbjct: 448 MKDEGIQPD-------ICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQ 500

Query: 306 GIAS 309
           G  S
Sbjct: 501 GFCS 504



 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 174/306 (56%), Gaps = 11/306 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   +  +YG+ ++G+CK G+   A ++L ++    + P  V YNT+ID  C    +  A
Sbjct: 172 GFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 231

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EMV +GI P   TYN LI    +  KM +A D+  +M  + I P+  T+NIL++G
Sbjct: 232 FDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDG 291

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGML 182
           +C+    K+A ++   M+ +GI+P + TY SL+  + L K+    +A  +F     +G+ 
Sbjct: 292 FCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVN--KAKHIFNTISQRGVN 349

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+I  ++ +I G C    ++ A +L KEM    + PD VTYN+L+ G C+ GK+  A +L
Sbjct: 350 PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +D+M  RG+  D       ++TYN+++  LCKN + D A  LL +M  +GI PD  TY +
Sbjct: 410 VDEMHDRGVPHD-------KITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTT 462

Query: 303 LIEGIA 308
           L++G+ 
Sbjct: 463 LVDGLC 468



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 156/293 (53%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    + P+ YT+   V G CKE RL+EA  +L  M + G+ P   TYN+L+D YC    
Sbjct: 273 MIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKE 332

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + + ++G+ P   +Y+++IH     +K+ EA ++ KEM    I+PD +TYN 
Sbjct: 333 VNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNS 392

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L DEM  +G+    +TY S++  L K +++ +A  L      +G
Sbjct: 393 LIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 452

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +  L+DG C NG +E A  + +++       D   Y  ++ G C  G  +E+ 
Sbjct: 453 IQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESL 512

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            LL +M+  G  P+ +       TY  +I  L    E D AE+LLREM+++G+
Sbjct: 513 DLLSKMEENGCIPNAV-------TYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 166/300 (55%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ PD  TY + +SG C  G++++A+ +  +M    + P   T+N L+DG+C +  
Sbjct: 238 MVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERR 297

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +    M+KQGI P   TYN L+    + +++ +A  +   + ++G+ P+  +Y+I
Sbjct: 298 LKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSI 357

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+     +A +L  EM    I P ++TY SLI  L K  ++  A +L +    +G
Sbjct: 358 MIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 417

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D + +N+++D  C N  +++A +LL +M    + PD  TY TL+ G C+ G++E+AR
Sbjct: 418 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDAR 477

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +  +G   D          Y A+IQG C +   D + +LL +M   G  P+  TY
Sbjct: 478 IVFEDLLVKGYILD-------VNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTY 530



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 159/314 (50%), Gaps = 7/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D       ++   + G+   +  +L ++ + G  P  +T  TLI G C KG 
Sbjct: 98  MEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQ 157

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D++V  G      +Y  LI+ L    +   A  +L+ +  K + P+ + YN 
Sbjct: 158 IHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNT 217

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF L+ EM+ KGI P ++TY +LI       +M +A  LF   + + 
Sbjct: 218 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFEN 277

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  FN L+DG C    ++ A ++L  M +  + PD  TYN+LM   C   +V +A+
Sbjct: 278 INPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAK 337

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + + +RG+       NP   +Y+ +I G CK ++ D A  L +EM    I PD  TY
Sbjct: 338 HIFNTISQRGV-------NPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTY 390

Query: 301 FSLIEGIASVDKAA 314
            SLI+G+  + K +
Sbjct: 391 NSLIDGLCKLGKIS 404



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 9/262 (3%)

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           NK NL    SF   + ++   P+   +  ++  L+          + ++M   GI  D +
Sbjct: 51  NKHNL--VSSFNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLV 108

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
             +ILIN + + G    +FS+  +++  G +P ++T T+LI  L  + ++ +A Q  +  
Sbjct: 109 ILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKV 168

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +A G   + V +  LI+G C  G    A  LL+ +D   V P+ V YNT++   C+   V
Sbjct: 169 VALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLV 228

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA  L  +M  +GI PD +       TYNALI G C   +   A +L  +M+ + I P+
Sbjct: 229 NEAFDLYSEMVSKGISPDVV-------TYNALISGFCIVGKMKDATDLFNKMIFENINPN 281

Query: 297 DNTYFSLIEGIASVDKAAESSN 318
             T+  L++G     +  E+ N
Sbjct: 282 VYTFNILVDGFCKERRLKEAKN 303


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 172/312 (55%), Gaps = 19/312 (6%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  T+ + ++G+C+EGR+ EA  +L++M E+GL P  +TY T++DG C  G+   A +
Sbjct: 78  KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 137

Query: 67  FRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +M +   I P    Y+ +I  L  + +  +A ++  EM +KGI PD +TY+ +ING+
Sbjct: 138 LLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGF 197

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   +A  L  EM+ + I P ++T++ LI  L K+  +  A  L +  ++ G+ P++
Sbjct: 198 CSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNV 257

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRM-----------KVHPDEVTYNTLMHGRCRQG 234
           V  N L+DG C +G ++ A  + K M +             V PD  TYN L+ G   +G
Sbjct: 258 VTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEG 317

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           K  EA  L ++M  RGI PD +       TY+++I GLCK    D A ++   M SK  +
Sbjct: 318 KFLEAEELYEEMPHRGIVPDTV-------TYSSMINGLCKQSRLDEATQMFDSMGSKSFS 370

Query: 295 PDDNTYFSLIEG 306
           P+  T+ +LI G
Sbjct: 371 PNIVTFNTLITG 382



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 168/315 (53%), Gaps = 18/315 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PD   Y + + G+ K+GR  +A  +  +M++ G+ P  VTY+ +I+G+C+ G    A 
Sbjct: 148 IKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQ 207

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM+ + I P   T++ LI+ L+ E  +  A D+L+EM   G+ P+ +T N L++G 
Sbjct: 208 RLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGL 267

Query: 126 CRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           C  G  K A  +   M              G++P + TY  LI  L  + + +EA++L+E
Sbjct: 268 CDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYE 327

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
               +G++PD V ++++I+G C    ++ A  +   M      P+ VT+NTL+ G C+ G
Sbjct: 328 EMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAG 387

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            V++   L  +M RRGI  + I       TY  LI+G  K    + + ++ +EM+S G+ 
Sbjct: 388 MVDDGLELFCEMGRRGIVANAI-------TYITLIRGFRKVGNINGSLDIFQEMISSGVY 440

Query: 295 PDDNTYFSLIEGIAS 309
           PD  T  +++ G+ S
Sbjct: 441 PDTITIRNMLTGLWS 455



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 166/318 (52%), Gaps = 9/318 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   T+ + + G+C E R+ EA  +  QM +    P  VT+ TL++G C +G +  A
Sbjct: 45  GFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEA 100

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIVPDSITYNILIN 123
            +  D MV+ G+ P   TY  ++  +      V A ++L++M E   I PD + Y+ +I+
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G  + G    A +L  EM  KGI P ++TY+ +I       +  EA +L +  L + + P
Sbjct: 161 GLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISP 220

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V F+ LI+     G++  A  LL+EM    V P+ VT NTL+ G C  GK+++A  + 
Sbjct: 221 DVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMF 280

Query: 244 DQMKRRGIKPDHI-SFN---PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             M++  +  D   +FN   P   TYN LI GL    +   AEEL  EM  +GI PD  T
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340

Query: 300 YFSLIEGIASVDKAAESS 317
           Y S+I G+    +  E++
Sbjct: 341 YSSMINGLCKQSRLDEAT 358



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 155/299 (51%), Gaps = 18/299 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD  TY   ++G C  G+  EA R+L++M    + P  VT++ LI+    +G+
Sbjct: 178 MQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGD 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
           L  A     EM+  G+ P   T N L+  L    K+ +A +M K M +            
Sbjct: 238 LNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFN 297

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ PD  TYNILI+G    G   +A  L++EM H+GI P  +TY+S+I  L KQ+R+ EA
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            Q+F++  +K   P+IV FN LI G+C  G ++    L  EM R  +  + +TY TL+ G
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
             + G +  +  +  +M   G+ PD I       T   ++ GL   +E   A  +L E+
Sbjct: 418 FRKVGNINGSLDIFQEMISSGVYPDTI-------TIRNMLTGLWSKEELKKALAMLEEL 469



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 138/258 (53%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+   ++ + KEG L  A  +L++M  +G+ P  VT NTL+DG C+ G 
Sbjct: 213 MLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGK 272

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 273 LKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 332

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD++TY+ +ING C+     +A  + D M  K   P ++T+ +LI    K   + + 
Sbjct: 333 GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ + + +  LI G    GNI  +  + +EM    V+PD +T   ++ G
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452

Query: 230 RCRQGKVEEARRLLDQMK 247
              + ++++A  +L++++
Sbjct: 453 LWSKEELKKALAMLEELQ 470



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           ++N+LI       K+  A     ++ + G  P  +T+N L++G C      +A  L    
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDL---- 72

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
            H+  +P ++T+T+L+  L ++ R++EA  L +  +  G+ P+ + +  ++DG C  G+ 
Sbjct: 73  FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 202 ERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
             A +LL++M+ +  + PD V Y+ ++ G  + G+  +A+ L  +M+ +GI PD +    
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIV---- 188

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
              TY+ +I G C + +   A+ LL+EM+ + I+PD  T+  LI  + 
Sbjct: 189 ---TYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALV 233



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  FN LI   C+   +  A S   ++ ++  HP  VT+NTL+HG C + +V EA  L 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            QM +           P  +T+  L+ GLC+      A  LL  MV  G+ P+  TY ++
Sbjct: 74  HQMCK-----------PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTI 122

Query: 304 IEGIASVDKAAESSN 318
           ++G+  +     + N
Sbjct: 123 VDGMCKMGDTVSALN 137


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 174/379 (45%), Gaps = 63/379 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M   G  PD+ +Y   + G C E R EEA  +L  M  +      P  VTY T+IDG C 
Sbjct: 160 MPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCK 219

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
               + A     +M+  G+ P   TYN LIH  L   K  E   ML++M  +G+ PD  T
Sbjct: 220 AQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYT 279

Query: 118 Y--------------------------------NILINGYCRCGNAKKAFSLHDEMIHKG 145
           Y                                NI  + Y +CG   KA  + ++M   G
Sbjct: 280 YGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 339

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++ Y +LI  L K  R+ +A+  F   + +G+ P+IV+FN+L+ G CT    ERA 
Sbjct: 340 LSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAE 399

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
            L+ EM    + P+ V +NTL+   C  G+V E RRL+D M+  G++PD  S+       
Sbjct: 400 ELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGY 459

Query: 259 ---------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                +PT +TYN L+ G C     D A  L REM+ KG+TP  
Sbjct: 460 CLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGV 519

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY +++ G+    + +E+
Sbjct: 520 VTYNTILHGLFQTKRFSEA 538



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD + +  F S   K G +++A  +  +M+++GL P  V Y  LID  C  G 
Sbjct: 300 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 359

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G+ P    +N L++ L    K   A++++ EM ++GI P+++ +N 
Sbjct: 360 VDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNT 419

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C  G   +   L D M H G++P   +YT LI       R  EA+++F+  ++ G
Sbjct: 420 LICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIG 479

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +N L+ G+C+   I+ A+ L +EM R  V P  VTYNT++HG  +  +  EA+
Sbjct: 480 LSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAK 539

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   G K D         TYN ++ GLCK+   D A ++ + + SKG+  +  T+
Sbjct: 540 ELYLNMINSGTKCD-------IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 592

Query: 301 FSLIEGI 307
             +I  +
Sbjct: 593 TIMIGAL 599



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 159/316 (50%), Gaps = 13/316 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++PD YTYGS ++ +C    L E    L+ M ENGL P    +N     Y   G 
Sbjct: 268 MSARGLKPDCYTYGSLLNYLCA---LSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGM 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M + G+ P    Y  LI  L    ++ +A+    +M  +G+ P+ + +N 
Sbjct: 325 IDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNS 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C     ++A  L  EM+ +GI P  + + +LI  L    R++E  +L +     G
Sbjct: 385 LVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG 444

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  LI G+C  G  + A  +   M  + + P EVTYNTL+HG C   ++++A 
Sbjct: 445 VRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAY 504

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M R+G+ P  +       TYN ++ GL + +    A+EL   M++ G   D  TY
Sbjct: 505 CLFREMLRKGVTPGVV-------TYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTY 557

Query: 301 FSLIEGIA---SVDKA 313
             ++ G+     VD+A
Sbjct: 558 NIILNGLCKSNCVDEA 573



 Score =  156 bits (395), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 133/249 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD+++Y   +SG C  GR +EA ++ + M   GL PT VTYNTL+ GYC+   
Sbjct: 440 MEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASR 499

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    EM+++G+ P   TYN ++H L   ++  EA ++   M   G   D  TYNI
Sbjct: 500 IDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNI 559

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+     +AF +   +  KG+Q  ++T+T +I  L K  R  +A  LF    A G
Sbjct: 560 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANG 619

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V +  + +     G++E   SL   M++    P+    N L+     +G +  A 
Sbjct: 620 LVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAG 679

Query: 241 RLLDQMKRR 249
             L ++  R
Sbjct: 680 AYLSKLDER 688



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 148/306 (48%), Gaps = 11/306 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+   + S V G+C   + E A  ++ +M + G+ P AV +NTLI   CN G 
Sbjct: 370 MINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGR 429

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       D M   G+ P A +Y  LI    +  +  EA+ +   M   G+ P  +TYN 
Sbjct: 430 VMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNT 489

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC       A+ L  EM+ KG+ P ++TY +++  L +  R  EA +L+ N +  G
Sbjct: 490 LLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 549

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              DI  +N +++G C +  ++ AF + + +    +  + +T+  ++    + G+ E+A 
Sbjct: 550 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 609

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   +   G+ P+ +++   RL    LI      +EG L E   L   M   G  P+  
Sbjct: 610 DLFAAIPANGLVPNVVTY---RLVAENLI------EEGSLEEFDSLFSAMEKNGTAPNSQ 660

Query: 299 TYFSLI 304
              +L+
Sbjct: 661 MLNALV 666



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 35/304 (11%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           + P   TY+ LI   C  G L+ +F+    ++K G        N L+  L   +++ EA 
Sbjct: 94  VAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAM 153

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH---KGIQPTMLTYTSL 156
           D +L+ M E G  PD+++Y+IL+ G+C    A++A  L   M +   +   P ++TYT++
Sbjct: 154 DVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTV 213

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I  L K      A+ +F+  +  G+ P+   +N LI G+ + G  +    +L++M    +
Sbjct: 214 IDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGL 273

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------- 259
            PD  TY +L++  C    + E    LD M   G+ PDH  FN                 
Sbjct: 274 KPDCYTYGSLLNYLC---ALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMD 330

Query: 260 -----------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                      P  + Y ALI  LCK    D AE    +M+++G+TP+   + SL+ G+ 
Sbjct: 331 IFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC 390

Query: 309 SVDK 312
           +VDK
Sbjct: 391 TVDK 394



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 75/176 (42%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D YTY   ++G+CK   ++EA +M + +   GL    +T+  +I      G 
Sbjct: 545 MINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGR 604

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      +   G++P   TY L+   L+ E  + E D +   M + G  P+S   N 
Sbjct: 605 KEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNA 664

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           L+      G+  +A +   ++  +       T + LI + +       A  L E +
Sbjct: 665 LVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSLPEKY 720



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 81/229 (35%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDG-----------HCTNGNIERAFSLLKEMDR--- 213
           +A +LF+  L       +V FN +++              +    E   SL   M R   
Sbjct: 32  DALKLFDELLIHARPASVVAFNQILNAVSRASRASGRRSSSTSESELVVSLFNRMVRECS 91

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVE-----------------------------EARR--- 241
           +KV P+  TY+ L+   CR G+++                             + +R   
Sbjct: 92  IKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGE 151

Query: 242 ----LLDQMKRRGIKPDHISFN-------------------------------PTRLTYN 266
               LL +M   G  PD +S++                               P  +TY 
Sbjct: 152 AMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYT 211

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            +I GLCK Q  D AE + ++M+  G+ P+++TY  LI G  S+ K  E
Sbjct: 212 TVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKE 260


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 176/347 (50%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+++TYG+F+SG  +      A + +++M+E G++P  V    LI+ YC KG 
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK 572

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    MV QGI+  A TY +L++ L    K+ +A+++ +EM  KGI PD  +Y +
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+ + GN +KA S+ DEM+ +G+ P ++ Y  L+    +   + +A +L +    KG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  +IDG+C +G++  AF L  EM    + PD   Y TL+ G CR   VE A 
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 752

Query: 241 RLLDQMKRRGIKPDHISFN--------------------------------PTRLTYNAL 268
            +     ++G       FN                                P  +TYN +
Sbjct: 753 TIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           I  LCK    + A+EL  +M +  + P   TY SL+ G   + + AE
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAE 858



 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+   Y + +    +  R  +A R+L++MKE G+ P    YN+LI G      
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A SF  EMV+ G+ P A TY   I   +   +   AD  +KEM E G++P+ +    
Sbjct: 503 MDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTG 562

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G   +A S +  M+ +GI     TYT L+  L K +++ +A+++F     KG
Sbjct: 563 LINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG 622

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  LI+G    GN+++A S+  EM    + P+ + YN L+ G CR G++E+A+
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LLD+M  +G+ P+ +       TY  +I G CK+  GDLAE   L  EM  KG+ PD  
Sbjct: 683 ELLDEMSVKGLHPNAV-------TYCTIIDGYCKS--GDLAEAFRLFDEMKLKGLVPDSF 733

Query: 299 TYFSLIEG 306
            Y +L++G
Sbjct: 734 VYTTLVDG 741



 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 97/274 (35%), Positives = 149/274 (54%), Gaps = 7/274 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD + Y S + G+ K  R++EA   L +M ENGL P A TY   I GY     
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  +  EM + G++P       LI+E   + K++EA    + M ++GI+ D+ TY +
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG  +      A  +  EM  KGI P + +Y  LI   SK   M +A  +F+  + +G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++++N L+ G C +G IE+A  LL EM    +HP+ VTY T++ G C+ G + EA 
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           RL D+MK +G+ PD          Y  L+ G C+
Sbjct: 718 RLFDEMKLKGLVPDS-------FVYTTLVDGCCR 744



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 165/344 (47%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P +  Y S + G C+E  + +   +L +MK+  +V +  TY T++ G C+ G+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A++   EM+  G  P    Y  LI   L   +  +A  +LKEM E+GI PD   YN 
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G  +     +A S   EM+  G++P   TY + I    + +    AD+  +     G
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG 552

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V+   LI+ +C  G +  A S  + M    +  D  TY  LM+G  +  KV++A 
Sbjct: 553 VLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            +  +M+ +GI PD  S+                             P  + YN L+ G 
Sbjct: 613 EIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C++ E + A+ELL EM  KG+ P+  TY ++I+G       AE+
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 159/341 (46%), Gaps = 38/341 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD ++YG  ++G  K G +++AS + ++M E GL P  + YN L+ G+C  G 
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM  +G+ P A TY  +I        + EA  +  EM  KG+VPDS  Y  
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEA-DQLFENF 176
           L++G CR  + ++A ++      KG   +   + +LI   F   K     E  ++L +  
Sbjct: 738 LVDGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGS 796

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +   P+ V +N +ID  C  GN+E A  L  +M    + P  +TY +L++G  + G+ 
Sbjct: 797 FDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRR 856

Query: 237 EEARRLLDQMKRRGIKPDHISFNP---------------------------------TRL 263
            E   + D+    GI+PDHI ++                                  +  
Sbjct: 857 AEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSIS 916

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           T  AL+ G  K  E ++AE+++  MV     PD  T   LI
Sbjct: 917 TCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 28/322 (8%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM------------ 63
            +  + +  RL+    + + M E  +V    TY+ LI  +C  GN+++            
Sbjct: 192 LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEF 251

Query: 64  ---------AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
                    A   ++ M+ +G++P   TY++LI  L   +++ +A  +L EM   G+  D
Sbjct: 252 RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLD 311

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           + TY++LI+G  +  NA  A  L  EM+  GI      Y   I V+SK+  M +A  LF+
Sbjct: 312 NHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFD 371

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             +A G++P    + +LI+G+C   N+ + + LL EM +  +     TY T++ G C  G
Sbjct: 372 GMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            ++ A  ++ +M   G +P+ +        Y  LI+   +N     A  +L+EM  +GI 
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVV-------IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           PD   Y SLI G++   +  E+
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEA 506



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 148/319 (46%), Gaps = 7/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P  YTY   + G+CK  RLE+A  +L +M   G+     TY+ LIDG     N
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EMV  GI      Y+  I  +  E  M +A  +   M   G++P +  Y  
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR  N ++ + L  EM  + I  +  TY +++  +     +  A  + +  +A G
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V++  LI     N     A  +LKEM    + PD   YN+L+ G  +  +++EAR
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M   G+KP+         TY A I G  +  E   A++ ++EM   G+ P+    
Sbjct: 508 SFLVEMVENGLKPNA-------FTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560

Query: 301 FSLIEGIASVDKAAESSNS 319
             LI       K  E+ ++
Sbjct: 561 TGLINEYCKKGKVIEACSA 579



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 149/343 (43%), Gaps = 53/343 (15%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------------VTY 48
           DS+++ +    +C  G  E+A  ++E+M E    P A                    V +
Sbjct: 98  DSFSFLAL--DLCNFGSFEKALSVVERMIERNW-PVAEVWSSIVRCSQEFVGKSDDGVLF 154

Query: 49  NTLIDGYCNKGNLEMA-FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
             L DGY  KG +E A F F   M  + ++P  S   +L+  LL   ++    D+ K M 
Sbjct: 155 GILFDGYIAKGYIEEAVFVFSSSMGLE-LVPRLSRCKVLLDALLRWNRLDLFWDVYKGMV 213

Query: 108 EKGIVPDSITYNILINGYCRCGNAK---------------------KAFSLHDEMIHKGI 146
           E+ +V D  TY++LI  +CR GN +                      A  L + MI KG+
Sbjct: 214 ERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGL 273

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P   TY  LI  L K  R+ +A  L     + G+  D   ++ LIDG     N + A  
Sbjct: 274 VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKG 333

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L+ EM    ++     Y+  +    ++G +E+A+ L D M   G+ P   +       Y 
Sbjct: 334 LVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA-------YA 386

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           +LI+G C+ +      ELL EM  + I     TY ++++G+ S
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS 429



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 109/278 (39%), Gaps = 78/278 (28%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++ TY + + G CK G L EA R+ ++MK  GLVP +  Y TL+DG C   +
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747

Query: 61  LEMA-------------------------FSFRDEMVKQGIM-------------PTAST 82
           +E A                         F F    +K  ++             P   T
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           YN++I  L  E  +  A ++  +M    ++P  ITY  L+NGY + G   + F + DE I
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEA----DQLF------------------------- 173
             GI+P  + Y+ +I    K+    +A    DQ+F                         
Sbjct: 868 AAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927

Query: 174 -----------ENFLAKGMLPDIVMFNALIDGHCTNGN 200
                      EN +    +PD      LI+  C + N
Sbjct: 928 VGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TY   +  +CKEG LE A  +  QM+   L+PT +TY +L++GY   G     F 
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI-----L 121
             DE +  GI P    Y+++I+  L E    +A  ++ +M  K  V D    +I     L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF-VLSKQNRMIEADQL 172
           ++G+ + G  + A  + + M+     P   T   LI       N+ +EAD +
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 44/223 (19%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-----FVLSKQNRMIEADQ 171
           +++ L    C  G+ +KA S+ + MI +   P    ++S++     FV  K +  +    
Sbjct: 99  SFSFLALDLCNFGSFEKALSVVERMIERN-WPVAEVWSSIVRCSQEFV-GKSDDGVLFGI 156

Query: 172 LFENFLAKG----------------MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           LF+ ++AKG                ++P +     L+D       ++  + + K M    
Sbjct: 157 LFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERN 216

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           V  D  TY+ L+   CR G V+  + +L + ++         F    L           N
Sbjct: 217 VVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKE--------FRTATL-----------N 257

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            +G L  +L   M+ KG+ P   TY  LI+G+  + +  ++ +
Sbjct: 258 VDGAL--KLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKS 298


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 176/347 (50%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+++TYG+F+SG  +      A + +++M+E G++P  V    LI+ YC KG 
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK 572

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    MV QGI+  A TY +L++ L    K+ +A+++ +EM  KGI PD  +Y +
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+ + GN +KA S+ DEM+ +G+ P ++ Y  L+    +   + +A +L +    KG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  +IDG+C +G++  AF L  EM    + PD   Y TL+ G CR   VE A 
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 752

Query: 241 RLLDQMKRRGIKPDHISFN--------------------------------PTRLTYNAL 268
            +     ++G       FN                                P  +TYN +
Sbjct: 753 TIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           I  LCK    + A+EL  +M +  + P   TY SL+ G   + + AE
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAE 858



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+   Y + +    +  R  +A R+L++MKE G+ P    YN+LI G      
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A SF  EMV+ G+ P A TY   I   +   +   AD  +KEM E G++P+ +    
Sbjct: 503 MDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTG 562

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G   +A S +  M+ +GI     TYT L+  L K +++ +A+++F     KG
Sbjct: 563 LINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG 622

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  LI+G    GN+++A S+  EM    + P+ + YN L+ G CR G++E+A+
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LLD+M  +G+ P+ +       TY  +I G CK+  GDLAE   L  EM  KG+ PD  
Sbjct: 683 ELLDEMSVKGLHPNAV-------TYCTIIDGYCKS--GDLAEAFRLFDEMKLKGLVPDSF 733

Query: 299 TYFSLIEG 306
            Y +L++G
Sbjct: 734 VYTTLVDG 741



 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 97/274 (35%), Positives = 149/274 (54%), Gaps = 7/274 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD + Y S + G+ K  R++EA   L +M ENGL P A TY   I GY     
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  +  EM + G++P       LI+E   + K++EA    + M ++GI+ D+ TY +
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG  +      A  +  EM  KGI P + +Y  LI   SK   M +A  +F+  + +G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++++N L+ G C +G IE+A  LL EM    +HP+ VTY T++ G C+ G + EA 
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           RL D+MK +G+ PD          Y  L+ G C+
Sbjct: 718 RLFDEMKLKGLVPDS-------FVYTTLVDGCCR 744



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 165/344 (47%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P +  Y S + G C+E  + +   +L +MK+  +V +  TY T++ G C+ G+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A++   EM+  G  P    Y  LI   L   +  +A  +LKEM E+GI PD   YN 
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G  +     +A S   EM+  G++P   TY + I    + +    AD+  +     G
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG 552

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V+   LI+ +C  G +  A S  + M    +  D  TY  LM+G  +  KV++A 
Sbjct: 553 VLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            +  +M+ +GI PD  S+                             P  + YN L+ G 
Sbjct: 613 EIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C++ E + A+ELL EM  KG+ P+  TY ++I+G       AE+
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 159/341 (46%), Gaps = 38/341 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD ++YG  ++G  K G +++AS + ++M E GL P  + YN L+ G+C  G 
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM  +G+ P A TY  +I        + EA  +  EM  KG+VPDS  Y  
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEA-DQLFENF 176
           L++G CR  + ++A ++      KG   +   + +LI   F   K     E  ++L +  
Sbjct: 738 LVDGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGS 796

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +   P+ V +N +ID  C  GN+E A  L  +M    + P  +TY +L++G  + G+ 
Sbjct: 797 FDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRR 856

Query: 237 EEARRLLDQMKRRGIKPDHISFNP---------------------------------TRL 263
            E   + D+    GI+PDHI ++                                  +  
Sbjct: 857 AEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSIS 916

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           T  AL+ G  K  E ++AE+++  MV     PD  T   LI
Sbjct: 917 TCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 28/322 (8%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM------------ 63
            +  + +  RL+    + + M E  +V    TY+ LI  +C  GN+++            
Sbjct: 192 LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEF 251

Query: 64  ---------AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
                    A   ++ M+ +G++P   TY++LI  L   +++ +A  +L EM   G+  D
Sbjct: 252 RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLD 311

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           + TY++LI+G  +  NA  A  L  EM+  GI      Y   I V+SK+  M +A  LF+
Sbjct: 312 NHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFD 371

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             +A G++P    + +LI+G+C   N+ + + LL EM +  +     TY T++ G C  G
Sbjct: 372 GMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            ++ A  ++ +M   G +P+ +        Y  LI+   +N     A  +L+EM  +GI 
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVV-------IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           PD   Y SLI G++   +  E+
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEA 506



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 148/319 (46%), Gaps = 7/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P  YTY   + G+CK  RLE+A  +L +M   G+     TY+ LIDG     N
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EMV  GI      Y+  I  +  E  M +A  +   M   G++P +  Y  
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR  N ++ + L  EM  + I  +  TY +++  +     +  A  + +  +A G
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V++  LI     N     A  +LKEM    + PD   YN+L+ G  +  +++EAR
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M   G+KP+         TY A I G  +  E   A++ ++EM   G+ P+    
Sbjct: 508 SFLVEMVENGLKPNA-------FTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560

Query: 301 FSLIEGIASVDKAAESSNS 319
             LI       K  E+ ++
Sbjct: 561 TGLINEYCKKGKVIEACSA 579



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 148/343 (43%), Gaps = 53/343 (15%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------------VTY 48
           DS+++ +    +C  G  E+A  ++E+M E    P A                    V +
Sbjct: 98  DSFSFLAL--DLCNFGSFEKALSVVERMIERNW-PVAEVWSSIVRCSQEFVGKSDDGVLF 154

Query: 49  NTLIDGYCNKGNLEMA-FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
             L DGY  K  +E A F F   M  + ++P  S   +L+  LL   ++    D+ K M 
Sbjct: 155 GILFDGYIAKEYIEEAVFVFSSSMGLE-LVPRLSRCKVLLDALLRWNRLDLFWDVYKGMV 213

Query: 108 EKGIVPDSITYNILINGYCRCGNAK---------------------KAFSLHDEMIHKGI 146
           E+ +V D  TY++LI  +CR GN +                      A  L + MI KG+
Sbjct: 214 ERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGL 273

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P   TY  LI  L K  R+ +A  L     + G+  D   ++ LIDG     N + A  
Sbjct: 274 VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKG 333

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L+ EM    ++     Y+  +    ++G +E+A+ L D M   G+ P   +       Y 
Sbjct: 334 LVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA-------YA 386

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           +LI+G C+ +      ELL EM  + I     TY ++++G+ S
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS 429



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 109/278 (39%), Gaps = 78/278 (28%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++ TY + + G CK G L EA R+ ++MK  GLVP +  Y TL+DG C   +
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747

Query: 61  LEMA-------------------------FSFRDEMVKQGIM-------------PTAST 82
           +E A                         F F    +K  ++             P   T
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           YN++I  L  E  +  A ++  +M    ++P  ITY  L+NGY + G   + F + DE I
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEA----DQLF------------------------- 173
             GI+P  + Y+ +I    K+    +A    DQ+F                         
Sbjct: 868 AAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927

Query: 174 -----------ENFLAKGMLPDIVMFNALIDGHCTNGN 200
                      EN +    +PD      LI+  C + N
Sbjct: 928 VGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TY   +  +CKEG LE A  +  QM+   L+PT +TY +L++GY   G     F 
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI-----L 121
             DE +  GI P    Y+++I+  L E    +A  ++ +M  K  V D    +I     L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF-VLSKQNRMIEADQL 172
           ++G+ + G  + A  + + M+     P   T   LI       N+ +EAD +
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 40.4 bits (93), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 44/223 (19%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-----FVLSKQNRMIEADQ 171
           +++ L    C  G+ +KA S+ + MI +   P    ++S++     FV  K +  +    
Sbjct: 99  SFSFLALDLCNFGSFEKALSVVERMIERN-WPVAEVWSSIVRCSQEFV-GKSDDGVLFGI 156

Query: 172 LFENFLAKG----------------MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           LF+ ++AK                 ++P +     L+D       ++  + + K M    
Sbjct: 157 LFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERN 216

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           V  D  TY+ L+   CR G V+  + +L + ++         F    L           N
Sbjct: 217 VVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKE--------FRTATL-----------N 257

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            +G L  +L   M+ KG+ P   TY  LI+G+  + +  ++ +
Sbjct: 258 VDGAL--KLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKS 298


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 171/309 (55%), Gaps = 7/309 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D Y++G  + G C+ G +E++  +L +++E G  P  V Y TLIDG C KG +E A    
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM K G++    TY +LIH L       +  +M ++M E G+ P+  TYN ++N  C+ 
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKD 281

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  K AF + DEM  +G+   ++TY +LI  L ++ +  EA+++ +   +  + P+++ +
Sbjct: 282 GRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITY 341

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LIDG C+ G + +A SL +++    + P  VTYN L+ G CR+G    A +++ +M+ 
Sbjct: 342 NTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEE 401

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           RGIK       P+++TY  LI    ++   + A +L   M   G+ PD +TY  LI G  
Sbjct: 402 RGIK-------PSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFC 454

Query: 309 SVDKAAESS 317
              +  E+S
Sbjct: 455 IKGQMNEAS 463



 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 165/297 (55%), Gaps = 7/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV P+ YTY   ++ +CK+GR ++A ++ ++M+E G+    VTYNTLI G C +  
Sbjct: 259 MQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMK 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M    I P   TYN LI       K+ +A  + +++  +G+ P  +TYN+
Sbjct: 319 ANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNV 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+CR G+   A  +  EM  +GI+P+ +TYT LI   ++ + M  A QL  +    G
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+  ++ LI G C  G +  A  L K M    + P+EV YNT++ G C++G    A 
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRAL 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           RL   M+ + + P+  S       Y+ LI+ LCK ++   AE+L+ +M+  GI P D
Sbjct: 499 RLFRDMEEKELAPNVAS-------YSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSD 548



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 163/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  + +TY   + G+ K G  ++   M E+M+E+G+ P   TYN +++  C  G 
Sbjct: 224 MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGR 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   DEM ++G+     TYN LI  L  E K  EA+ ++ +M    I P+ ITYN 
Sbjct: 284 TKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNT 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G   KA SL  ++  +G+ P+++TY  L+    ++     A ++ +    +G
Sbjct: 344 LIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  LID    + N+E A  L   M+ + + PD  TY+ L+HG C +G++ EA 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL   M  + ++P+ +        YN +I G CK      A  L R+M  K + P+  +Y
Sbjct: 464 RLFKSMVEKMLEPNEV-------IYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASY 516

Query: 301 FSLIEGIASVDKAAESSN 318
             LI  +    K  E+ +
Sbjct: 517 SYLIRVLCKERKLKEAED 534



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 9/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G  P+   Y + + G CK+G +E+A  +  +M + GLV    TY  LI G    G 
Sbjct: 189 LREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGI 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  F   ++M + G+ P   TYN ++++L  + +  +A  +  EM E+G+  + +TYN 
Sbjct: 249 KKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNT 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G CR   A +A  + D+M    I P ++TY +LI       ++ +A  L  +  ++G
Sbjct: 309 LIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +N L+ G C  G+   A  ++KEM+   + P +VTY  L+    R   +E A 
Sbjct: 369 LSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAI 428

Query: 241 RLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           +L   M+  G+ PD H        TY+ LI G C   + + A  L + MV K + P++  
Sbjct: 429 QLRSSMEELGLVPDVH--------TYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVI 480

Query: 300 YFSLIEG 306
           Y ++I G
Sbjct: 481 YNTMILG 487



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 113/191 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSRG+ P   TY   VSG C++G    A++M+++M+E G+ P+ VTY  LID +    N
Sbjct: 364 LKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDN 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   R  M + G++P   TY++LIH   ++ +M EA  + K M EK + P+ + YN 
Sbjct: 424 METAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNT 483

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G++ +A  L  +M  K + P + +Y+ LI VL K+ ++ EA+ L E  +  G
Sbjct: 484 MILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSG 543

Query: 181 MLPDIVMFNAL 191
           + P   + N +
Sbjct: 544 IDPSDTICNLI 554



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 116/230 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS  + P+  TY + + G C  G+L +A  +   +K  GL P+ VTYN L+ G+C KG+
Sbjct: 329 MKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGD 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM ++GI P+  TY +LI        M  A  +   M E G+VPD  TY++
Sbjct: 389 TSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSV 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G   +A  L   M+ K ++P  + Y ++I    K+     A +LF +   K 
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKE 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           + P++  ++ LI   C    ++ A  L+++M    + P +   N +   +
Sbjct: 509 LAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRAK 558



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 140/269 (52%), Gaps = 8/269 (2%)

Query: 48  YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
           Y  +I+ Y    +L+ +  + +EMV +G +P ++ +N L+  ++      +      E  
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
            K +V D  ++ I+I G C  G  +K+F L  E+   G  P ++ YT+LI    K+  + 
Sbjct: 157 IK-VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           +A  LF      G++ +   +  LI G   NG  ++ F + ++M    V P+  TYN +M
Sbjct: 216 KAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVM 275

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           +  C+ G+ ++A ++ D+M+ RG+  + +       TYN LI GLC+  + + A +++ +
Sbjct: 276 NQLCKDGRTKDAFKVFDEMRERGVSCNIV-------TYNTLIGGLCREMKANEANKVMDQ 328

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAES 316
           M S  I P+  TY +LI+G  SV K  ++
Sbjct: 329 MKSYVINPNLITYNTLIDGFCSVGKLGKA 357


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 172/312 (55%), Gaps = 19/312 (6%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  T+ + ++G+C+EGR+ EA  +L++M E+GL P  +TY T++DG C  G+   A +
Sbjct: 78  KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 137

Query: 67  FRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +M +   I P    Y+ +I  L  + +  +A ++  EM +KGI PD +TY+ +ING+
Sbjct: 138 LLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGF 197

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   +A  L  EM+ + I P ++T++ LI  L K+  +  A  L +  ++ G+ P++
Sbjct: 198 CSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNV 257

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRM-----------KVHPDEVTYNTLMHGRCRQG 234
           V  N L+DG C +G ++ A  + K M +             V PD  TYN L+ G   +G
Sbjct: 258 VTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEG 317

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           K  EA  L ++M  RGI PD +       TY+++I GLCK    D A ++   M SK  +
Sbjct: 318 KFLEAEELYEEMPHRGIVPDTV-------TYSSMINGLCKQSRLDEATQMFDSMGSKSFS 370

Query: 295 PDDNTYFSLIEG 306
           P+  T+ +LI G
Sbjct: 371 PNIVTFNTLITG 382



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 168/315 (53%), Gaps = 18/315 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PD   Y + + G+ K+GR  +A  +  +M++ G+ P  VTY+ +I+G+C+ G    A 
Sbjct: 148 IKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQ 207

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM+ + I P   T++ LI+ L+ E  +  A D+L+EM   G+ P+ +T N L++G 
Sbjct: 208 RLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGL 267

Query: 126 CRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           C  G  K A  +   M              G++P + TY  LI  L  + + +EA++L+E
Sbjct: 268 CDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYE 327

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
               +G++PD V ++++I+G C    ++ A  +   M      P+ VT+NTL+ G C+ G
Sbjct: 328 EMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAG 387

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            V++   L  +M RRGI  + I       TY  LI+G  K    + + ++ +EM+S G+ 
Sbjct: 388 MVDDGLELFCEMGRRGIVANAI-------TYITLIRGFRKVGNINGSLDIFQEMISSGVY 440

Query: 295 PDDNTYFSLIEGIAS 309
           PD  T  +++ G+ S
Sbjct: 441 PDTITIRNMLTGLWS 455



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 166/318 (52%), Gaps = 9/318 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   T+ + + G+C E R+ EA  +  QM +    P  VT+ TL++G C +G +  A
Sbjct: 45  GFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEA 100

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIVPDSITYNILIN 123
            +  D MV+ G+ P   TY  ++  +      V A ++L++M E   I PD + Y+ +I+
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G  + G    A +L  EM  KGI P ++TY+ +I       +  EA +L +  L + + P
Sbjct: 161 GLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISP 220

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V F+ LI+     G++  A  LL+EM    V P+ VT NTL+ G C  GK+++A  + 
Sbjct: 221 DVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMF 280

Query: 244 DQMKRRGIKPDHI-SFN---PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             M++  +  D   +FN   P   TYN LI GL    +   AEEL  EM  +GI PD  T
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340

Query: 300 YFSLIEGIASVDKAAESS 317
           Y S+I G+    +  E++
Sbjct: 341 YSSMINGLCKQSRLDEAT 358



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 155/299 (51%), Gaps = 18/299 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD  TY   ++G C  G+  EA R+L++M    + P  VT++ LI+    +G+
Sbjct: 178 MQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGD 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
           L  A     EM+  G+ P   T N L+  L    K+ +A +M K M +            
Sbjct: 238 LNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFN 297

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ PD  TYNILI+G    G   +A  L++EM H+GI P  +TY+S+I  L KQ+R+ EA
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            Q+F++  +K   P+IV FN LI G+C  G ++    L  EM R  +  + +TY TL+ G
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRG 417

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
             + G +  +  +  +M   G+ PD I       T   ++ GL   +E   A  +L E+
Sbjct: 418 FRKVGNINGSLDIFQEMISSGVYPDTI-------TIRNMLTGLWSKEELKRALAMLEEL 469



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 14/266 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+   ++ + KEG L  A  +L++M  +G+ P  VT NTL+DG C+ G 
Sbjct: 213 MLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGK 272

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 273 LKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 332

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD++TY+ +ING C+     +A  + D M  K   P ++T+ +LI    K   + + 
Sbjct: 333 GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ + + +  LI G    GNI  +  + +EM    V+PD +T   ++ G
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDH 255
              +   EE +R L  ++   +  DH
Sbjct: 453 LWSK---EELKRALAMLEELQMSMDH 475



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           ++N+LI       K+  A     ++ + G  P  +T+N L++G C      +A  L    
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDL---- 72

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
            H+  +P ++T+T+L+  L ++ R++EA  L +  +  G+ P+ + +  ++DG C  G+ 
Sbjct: 73  FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 202 ERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
             A +LL++M+ +  + PD V Y+ ++ G  + G+  +A+ L  +M+ +GI PD +    
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIV---- 188

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
              TY+ +I G C + +   A+ LL+EM+ + I+PD  T+  LI  + 
Sbjct: 189 ---TYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALV 233



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 11/135 (8%)

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  FN LI   C+   +  A S   ++ ++  HP  VT+NTL+HG C + +V EA  L 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            QM +           P  +T+  L+ GLC+      A  LL  MV  G+ P+  TY ++
Sbjct: 74  HQMCK-----------PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTI 122

Query: 304 IEGIASVDKAAESSN 318
           ++G+  +     + N
Sbjct: 123 VDGMCKMGDTVSALN 137


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+QPD   Y   +  +CK GR  EA  + + +   G+ P    Y  L+ GY  +G 
Sbjct: 263 MSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGA 322

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L    SF D MV+ G+ P    +N++ +    +  + EA  +  +M ++ + P  + Y  
Sbjct: 323 LSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGA 382

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A    ++MI++G+ P +  ++SL++ L   ++  +A++LF   L +G
Sbjct: 383 LIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQG 442

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   FN L+   C  G +  A  L+  M R+ V PD ++YNTL+ G C  G+++EA 
Sbjct: 443 IRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAA 502

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD M   G+KPD         TYN L+ G CK +  D A  L REM+ KG+TP   TY
Sbjct: 503 KLLDVMVSIGLKPDE-------FTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTY 555

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+  + +  E+
Sbjct: 556 NTILHGLFQIGRFCEA 571



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 157/312 (50%), Gaps = 11/312 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASR-MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           ++  +G  + G+C   R++EA+  +L +M E G     ++YN L+ G CN+   E A   
Sbjct: 127 NTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALEL 186

Query: 68  RDEMVKQG---IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              M   G     P   TY  +I  L   + +  A  + + M +KG+ P++ TY  LI+G
Sbjct: 187 MHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHG 246

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y   G  K+   +  EM   G+QP  + Y  L+  L K  R  EA  +F++ + KG+ P 
Sbjct: 247 YLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPH 306

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           + ++  L+ G+ T G +    S L  M R  V PD   +N + +   ++  ++EA  + D
Sbjct: 307 VTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFD 366

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M+++ + P  ++       Y ALI  LCK    D A     +M+++G+TPD   + SL+
Sbjct: 367 KMRQQWLSPGVVN-------YGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLV 419

Query: 305 EGIASVDKAAES 316
            G+ +VDK  ++
Sbjct: 420 YGLCTVDKWEKA 431



 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + + P    YG+ +  +CK GR+++A     QM   G+ P    +++L+ G C    
Sbjct: 368 MRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDK 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     E++ QGI   A+ +N+L+  L  E +++EA  ++  M    + PD I+YN 
Sbjct: 428 WEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNT 487

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C  G   +A  L D M+  G++P   TY +L+    K  R+ +A  LF   L KG
Sbjct: 488 LVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKG 547

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +N ++ G    G    A  L   M   +   D  TY  +++G CR   V+EA 
Sbjct: 548 LTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAF 607

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   +  + ++ D         T N +I  L K    + A +L   + + G+ PD  TY
Sbjct: 608 KMFQSLCSKDLQLDI-------FTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETY 660

Query: 301 FSLIEGI 307
             + E +
Sbjct: 661 RLIAENL 667



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 152/296 (51%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD + +    +   K+  ++EA  + ++M++  L P  V Y  LID  C  G 
Sbjct: 333 MVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGR 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ +G+ P    ++ L++ L    K  +A+ +  E+ ++GI  ++  +NI
Sbjct: 393 VDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNI 452

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   CR G   +A  L D M+   ++P +++Y +L+       R+ EA +L +  ++ G
Sbjct: 453 LMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIG 512

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +N L+ G+C    I+ A+SL +EM    + P  VTYNT++HG  + G+  EA+
Sbjct: 513 LKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAK 572

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L   M     K D         TY  ++ GLC+N   D A ++ + + SK +  D
Sbjct: 573 ELYLNMINNRRKCDI-------YTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLD 621



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 139/269 (51%), Gaps = 7/269 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++ ++  +   +  +C+EGR+ EA R+++ M    + P  ++YNTL+DG+C  G ++ 
Sbjct: 441 QGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDE 500

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    D MV  G+ P   TYN L+H     R++ +A  + +EM  KG+ P  +TYN +++
Sbjct: 501 AAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILH 560

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G  + G   +A  L+  MI+   +  + TYT ++  L + N + EA ++F++  +K +  
Sbjct: 561 GLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQL 620

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI   N +I      G  E A  L   +    + PD  TY  +     ++G +EE   L 
Sbjct: 621 DIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELF 680

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGL 272
             M+  G  P+      +R+  NAL++ L
Sbjct: 681 SAMEENGTAPN------SRML-NALVRWL 702



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 106/227 (46%), Gaps = 15/227 (6%)

Query: 100 DDMLKEMGEKGIV--PDSI-TYNILIN--GYCRCGNAKK-AFSLHDEMIHK---GIQPTM 150
           DD LK   E      P S+ T+N L+      RC +A +   SL + MI +    + P+ 
Sbjct: 33  DDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVKVAPSS 92

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGM-LPDIVMFNALIDGHCTNGNIERAFS-LL 208
            TYT LI    +  R+      F   L  G  L + V+F  L+ G C    ++ A   LL
Sbjct: 93  CTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILL 152

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           + M       + ++YN L+ G C + + EEA  L+  M   G      S  P  +TY  +
Sbjct: 153 RRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDG----SHTPNVVTYTTV 208

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           I GLCK Q  D A+ + + M+ KG+ P+++TY  LI G  S  K  E
Sbjct: 209 IDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKE 255



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 126/282 (44%), Gaps = 22/282 (7%)

Query: 51  LIDGYCNKGNLEM--AFSFRDEMVKQGIMPTASTYNLLIHELLMER-----KMVEA--DD 101
           +I G    G+L +  A    DEM+      +  T+N L+  +   R     ++V +  + 
Sbjct: 20  VIAGRARSGSLGLDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNR 79

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ-PTMLTYTSLIFVL 160
           M++E   K + P S TY ILI  +CR G  K  F+    ++  G      + +  L+  L
Sbjct: 80  MIRECSVK-VAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGL 138

Query: 161 SKQNRMIEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVH 217
               R+ EA D L       G   +++ +N L+ G C     E A  L+  M  D    H
Sbjct: 139 CDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGSH 198

Query: 218 -PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P+ VTY T++ G C+   V+ A+ +   M  +G++P++        TY  LI G     
Sbjct: 199 TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNN-------HTYTCLIHGYLSTG 251

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +     ++L+EM + G+ PD   Y  L++ +    +  E+ N
Sbjct: 252 KWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARN 293



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 91/247 (36%), Gaps = 70/247 (28%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M S G++PD +TY + + G CK  R+++A  +  +M   GL P  VTYNT++        
Sbjct: 508 MVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGR 567

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      +G C    ++ AF     +  + +     T N+
Sbjct: 568 FCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINI 627

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  LL   +  +A D+   +   G+VPD  TY ++                        
Sbjct: 628 MIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAEN--------------------- 666

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                         L K+  + E D+LF      G  P+  M NAL+      G+I RA 
Sbjct: 667 --------------LIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAG 712

Query: 206 SLLKEMD 212
             L ++D
Sbjct: 713 VYLSKLD 719



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 70/168 (41%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D YTY   ++G+C+   ++EA +M + +    L     T N +I      G  E A    
Sbjct: 586 DIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLF 645

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             +   G++P   TY L+   L+ E  + E D++   M E G  P+S   N L+      
Sbjct: 646 ATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHR 705

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           G+  +A     ++  K       T + LI + S+      A  L E +
Sbjct: 706 GDIGRAGVYLSKLDEKNFSLEASTTSMLISIYSRAEYQQLAKSLPEKY 753



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 61/135 (45%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+ +Q D +T    +  + K GR E+A  +   +   GLVP   TY  + +    +G+LE
Sbjct: 615 SKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLE 674

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                   M + G  P +   N L+  LL    +  A   L ++ EK    ++ T ++LI
Sbjct: 675 ELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNFSLEASTTSMLI 734

Query: 123 NGYCRCGNAKKAFSL 137
           + Y R    + A SL
Sbjct: 735 SIYSRAEYQQLAKSL 749


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 165/316 (52%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   + +TY   + G+CKEGR+  A R+LE+M   G+VP+  TYN +IDGYC  G 
Sbjct: 186 MVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   +  M + G  P   TYN+LI+ L  E K  EA+++L +   +G  P  IT+  
Sbjct: 246 MKDALGIKALMERNGCNPDDWTYNILIYGLCGE-KPDEAEELLNDAIVRGFTPTVITFTN 304

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +INGYC+      A  +   M+    +  +  Y  LI VL K+ R  EA +      A G
Sbjct: 305 IINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANG 364

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V++ ++IDG+C  G +  A  + + M+     P+  TY++L++G  +  K+ +A 
Sbjct: 365 LAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAM 424

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M+  GI P  I       TY  LIQG CK  E D A  L   M   G+TPD+  Y
Sbjct: 425 ALITKMQEDGITPGVI-------TYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAY 477

Query: 301 FSLIEGIASVDKAAES 316
             L   +    +A E+
Sbjct: 478 NVLTHALCKSGRAEEA 493



 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 156/316 (49%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY   + G+C E + +EA  +L      G  PT +T+  +I+GYC    
Sbjct: 256 MERNGCNPDDWTYNILIYGLCGE-KPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAER 314

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   +  M+          Y +LI+ L+ + +  EA + + EM   G+ P+ + Y  
Sbjct: 315 IDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTS 374

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G    A  +   M H+G +P   TY+SLI+ L +  ++ +A  L       G
Sbjct: 375 IIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDG 434

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ +  LI G C     + AF L + M++  + PDE  YN L H  C+ G+ EEA 
Sbjct: 435 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAY 494

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L    R+G+         T++TY +L+ G  K    D A  L+ +MV++G   D  TY
Sbjct: 495 SFL---VRKGVV-------LTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTY 544

Query: 301 FSLIEGIASVDKAAES 316
             L++ +    K  E+
Sbjct: 545 SVLLQALCKQKKLNEA 560



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 155/318 (48%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S   + D   YG  ++ + K+ R +EA   + +M  NGL P  V Y ++IDGYC  G 
Sbjct: 325 MLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGK 384

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +G  P A TY+ LI+ L+ ++K+ +A  ++ +M E GI P  ITY  
Sbjct: 385 VGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTT 444

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+      AF L + M   G+ P    Y  L   L K  R   A++ +   + KG
Sbjct: 445 LIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGR---AEEAYSFLVRKG 501

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++   V + +L+DG    GN + A  L+++M       D  TY+ L+   C+Q K+ EA 
Sbjct: 502 VVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEAL 561

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LDQM   G+K + ++       Y  +I  + K  + D A+ +  EM+S G  P   TY
Sbjct: 562 SILDQMTLSGVKCNIVA-------YTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTY 614

Query: 301 FSLIEGIASVDKAAESSN 318
              I     + +  E+ +
Sbjct: 615 TVFISSYCKIGQIEEAEH 632



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 158/321 (49%), Gaps = 26/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD   Y      +CK GR EEA   L +    G+V T VTY +L+DG+   GN
Sbjct: 465 MEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVR---KGVVLTKVTYTSLVDGFSKAGN 521

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    ++MV +G    + TY++L+  L  ++K+ EA  +L +M   G+  + + Y I
Sbjct: 522 TDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTI 581

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   + G    A S+ +EMI  G +P+  TYT  I    K  ++ EA+ L       G
Sbjct: 582 IISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG 641

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM------------- 227
           + PD+V +N  I+G    G ++RAFS LK M      P+  TY  L+             
Sbjct: 642 VAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHY 701

Query: 228 ---HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
               G     +++   +LL++M + G+       NPT +TY+++I G CK    + A  L
Sbjct: 702 VDTSGMWNWIELDTVWQLLERMVKHGL-------NPTAVTYSSIIAGFCKATRLEEACVL 754

Query: 285 LREMVSKGITPDDNTYFSLIE 305
              M  K I+P++  Y  LI+
Sbjct: 755 FDHMRGKDISPNEEIYTMLIK 775



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 153/358 (42%), Gaps = 57/358 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + DSYTY   +  +CK+ +L EA  +L+QM  +G+    V Y  +I     +G 
Sbjct: 532 MVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGK 591

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  +EM+  G  P+A+TY + I       ++ EA+ ++ EM   G+ PD +TYN+
Sbjct: 592 HDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNV 651

Query: 121 LINGYCRCGNAKKAFS-------------------------------------------- 136
            ING    G   +AFS                                            
Sbjct: 652 FINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWI 711

Query: 137 -------LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                  L + M+  G+ PT +TY+S+I    K  R+ EA  LF++   K + P+  ++ 
Sbjct: 712 ELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMRGKDISPNEEIYT 771

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI   C      +A S + +M      P   +Y+ L+ G C +G  ++A+ L   +   
Sbjct: 772 MLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYDKAKSLFCDL--L 829

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           G++     +N   + +  L  GL K    D   +LL  M ++    D  TY  + + I
Sbjct: 830 GME----DYNHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYSMVTDNI 883



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 8/188 (4%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           +Y ILI G C     ++A  L   M+  G    + TYT LI  L K+ R+  A ++ E  
Sbjct: 162 SYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEM 221

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +G++P +  +NA+IDG+C +G ++ A  +   M+R   +PD+ TYN L++G C + K 
Sbjct: 222 PLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGE-KP 280

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +EA  LL+    RG       F PT +T+  +I G CK +  D A  +   M+S     D
Sbjct: 281 DEAEELLNDAIVRG-------FTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLD 333

Query: 297 DNTYFSLI 304
              Y  LI
Sbjct: 334 LQAYGVLI 341


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PD  TY S +  +CK G+  EA ++ + M + GL P   TY TL+ GY +KG 
Sbjct: 103 MCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGA 162

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L         MV+ G+      +N+LI     + K+ E   +  +M ++G+ P+++ Y  
Sbjct: 163 LVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRT 222

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G    A    ++MI KG+ P ++ YTSLI  L   ++  +A++L    L +G
Sbjct: 223 VIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQG 282

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV FN ++D  C  G +  +  L   +  + V+PD +TY+TL+ G C  GK++ A 
Sbjct: 283 INPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAM 342

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M   G+KPD +       TY+ LI G CK    + A  L +EM S G+ PD  TY
Sbjct: 343 KLLTGMVSVGLKPDSV-------TYSTLINGYCKINRMEDALALFKEMESNGVNPDIITY 395

Query: 301 FSLIEGIASVDKAAES 316
             ++ G+    + A +
Sbjct: 396 NIILHGLFRTRRTAAA 411



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 143/259 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+Q D + +   +    K+ +++E   +  +M++ GL P AV Y T+IDG C  G 
Sbjct: 173 MVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGR 232

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M+ +G+ P    Y  LIH L    K  +A++++ E+ ++GI P+ + +N 
Sbjct: 233 LDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNT 292

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C+ G   ++  L D + H G+ P ++TY++LI       +M  A +L    ++ G
Sbjct: 293 ILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVG 352

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V ++ LI+G+C    +E A +L KEM+   V+PD +TYN ++HG  R  +   A+
Sbjct: 353 LKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAK 412

Query: 241 RLLDQMKRRGIKPDHISFN 259
            L  ++   G + +  ++N
Sbjct: 413 ELYARITESGTQLELSTYN 431



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 167/372 (44%), Gaps = 67/372 (18%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + + G+ KEG +++A     +M +  + P AVTYN++I        ++ A   
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAM-- 66

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             E++   +MP   TYN ++H      +  +A  + ++M   GI PD +TYN L++  C+
Sbjct: 67  --EVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTS-------------------------------- 155
            G   +A  + D M+ +G++P + TY +                                
Sbjct: 125 NGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHV 184

Query: 156 ---LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
              LI   +KQ ++ E   +F     +G+ P+ V +  +IDG C  G ++ A    ++M 
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMI 244

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD------------------ 254
              + P+ V Y +L+H  C   K E+A  L+ ++  +GI P+                  
Sbjct: 245 DKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVI 304

Query: 255 ----------HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                     HI  NP  +TY+ LI G C   + D A +LL  MVS G+ PD  TY +LI
Sbjct: 305 ESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLI 364

Query: 305 EGIASVDKAAES 316
            G   +++  ++
Sbjct: 365 NGYCKINRMEDA 376



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 35/227 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P++  Y + + G+CK GRL++A    EQM + GL P  V Y +LI   C    
Sbjct: 208 MRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDK 267

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI--------- 111
            E A     E++ QGI P    +N ++  L  E +++E+  +   +G  G+         
Sbjct: 268 WEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYST 327

Query: 112 --------------------------VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                      PDS+TY+ LINGYC+    + A +L  EM   G
Sbjct: 328 LIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNG 387

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++
Sbjct: 388 VNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIIL 434



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ P+   + + +  +CKEGR+ E+ ++ + +   G+ P  +TY+TLIDGYC  G ++ 
Sbjct: 281 QGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDG 340

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A      MV  G+ P + TY+ LI+      +M +A  + KEM   G+ PD ITYNI+++
Sbjct: 341 AMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILH 400

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           G  R      A  L+  +   G Q  + TY  ++   +K N ++     F  ++
Sbjct: 401 GLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSLMMHFGCFRTYV 454


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 172/335 (51%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  TY   +   CK    ++A ++L++M+  G  P  +TYN +++G C +G 
Sbjct: 182 MLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGR 241

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F   +   G  P   +YN+++  L    +  +A+ ++ EM +KG  P+ +T+N+
Sbjct: 242 VDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNM 301

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR G  + A  + D++   G  P  L+Y  ++    KQ +M  A    E  +++G
Sbjct: 302 LISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRG 361

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N L+   C  G ++ A  LL ++      P  ++YNT++ G  + GK +EA 
Sbjct: 362 CYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEAL 421

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL++M  +G++PD I+++                            P  + YNA++ GL
Sbjct: 422 ELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGL 481

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK +E   A +L   M+S G  P+++TY  LIEG+
Sbjct: 482 CKRRETHNAIDLFIYMISNGCMPNESTYTILIEGL 516



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 166/311 (53%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PDSYTY + + G+C  GR   A  +L+ M   G VP  VTY  L++  C +   + A 
Sbjct: 152 MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAM 211

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM  +G  P   TYN++++ +  E ++ +A + LK +   G  P++++YNI++ G 
Sbjct: 212 KLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGL 271

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C     + A  L  EM  KG  P ++T+  LI  L ++  +  A ++ +     G  P+ 
Sbjct: 272 CTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNS 331

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N ++   C    ++RA + ++ M     +PD V+YNTL+   CR G+V+ A  LL Q
Sbjct: 332 LSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQ 391

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +K +G  P  IS       YN +I GL K  +   A ELL EMV+KG+ PD  TY ++  
Sbjct: 392 LKDKGCTPVLIS-------YNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISS 444

Query: 306 GIASVDKAAES 316
           G+   D+  E+
Sbjct: 445 GLCREDRIEEA 455



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 160/312 (51%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
             +PD   Y + V+G C  G+L+ A R++  M    + P + TYNTLI G C +G    A
Sbjct: 119 ACEPDVMAYNAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNA 175

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M+++G +P   TY +L+          +A  +L EM  KG  PD ITYN+++NG
Sbjct: 176 LVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNG 235

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A      +   G +P  ++Y  ++  L    R  +A++L      KG  P+
Sbjct: 236 ICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPN 295

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V FN LI   C  G +E A  +L ++ +    P+ ++YN ++H  C+Q K++ A   ++
Sbjct: 296 VVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 355

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  RG  PD +S       YN L+  LC+  E D A ELL ++  KG TP   +Y ++I
Sbjct: 356 LMVSRGCYPDIVS-------YNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI 408

Query: 305 EGIASVDKAAES 316
           +G+    K  E+
Sbjct: 409 DGLTKAGKTKEA 420



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 148/294 (50%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +P++ +Y   + G+C   R E+A +++ +M + G  P  VT+N LI   C +G 
Sbjct: 252 LPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGL 311

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D++ K G  P + +YN ++H    ++KM  A   ++ M  +G  PD ++YN 
Sbjct: 312 VEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNT 371

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   CR G    A  L  ++  KG  P +++Y ++I  L+K  +  EA +L    + KG
Sbjct: 372 LLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKG 431

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ +  G C    IE A     ++  M + P+ V YN ++ G C++ +   A 
Sbjct: 432 LQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAI 491

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            L   M   G  P+         TY  LI+GL        A ELL E+ S+G+ 
Sbjct: 492 DLFIYMISNGCMPNES-------TYTILIEGLTYEGLVKEARELLGELCSRGVV 538



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 3/197 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  +Y + ++ +C+ G ++ A  +L Q+K+ G  P  ++YNT+IDG    G 
Sbjct: 357 MVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGK 416

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EMV +G+ P   TY+ +   L  E ++ EA     ++ + GI P+++ YN 
Sbjct: 417 TKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNA 476

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+      A  L   MI  G  P   TYT LI  L+ +  + EA +L     ++G
Sbjct: 477 ILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRG 536

Query: 181 MLPDIVMFNA---LIDG 194
           ++   ++  A   L+DG
Sbjct: 537 VVSKGLINKAAIRLLDG 553



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 101/209 (48%), Gaps = 22/209 (10%)

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT--YTSLIFVLSKQNRMIEA 169
           VP     N  + G  R G+ ++A  L + M   G++P+       +LI  L    R  EA
Sbjct: 56  VPHRAVSNDRLRGLVRRGDLEEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEA 113

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            ++          PD++ +NA++ G+C  G ++ A  L+ +M    + PD  TYNTL+ G
Sbjct: 114 RRVL-----AACEPDVMAYNAMVAGYCVTGQLDAARRLVADM---PMEPDSYTYNTLIRG 165

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C +G+   A  +LD M RRG  PD +       TY  L++  CK      A +LL EM 
Sbjct: 166 LCGRGRTGNALVVLDDMLRRGCVPDVV-------TYTILLEATCKRSGYKQAMKLLDEMR 218

Query: 290 SKGITPDDNTYFSLIEGIAS---VDKAAE 315
           +KG  PD  TY  ++ GI     VD A E
Sbjct: 219 AKGCAPDIITYNVVVNGICQEGRVDDAIE 247


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 169/306 (55%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P++ TY   + G C  G+LEEA R+L++M  +GL P  VTY  LI  YC  G 
Sbjct: 264 MFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGR 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A S  D MV++G  P ++ Y++L+H    +  +++  D+L  M   GI  +   +NI
Sbjct: 324 CAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNI 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y + G   KA +   EM   G++P +++Y+++I +L K  R+ +A   F   +++G
Sbjct: 384 LICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEG 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ F +LI G C+ G  ++   L  EM    +HPD +  NT+M   C++G+V EA+
Sbjct: 444 LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQ 503

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              D +   G+KP+ +S       YN LI G C   + D + +    MVS G+ PD  TY
Sbjct: 504 DFFDMVIHIGVKPNVVS-------YNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTY 556

Query: 301 FSLIEG 306
            +L+ G
Sbjct: 557 NALLNG 562



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 45/334 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG---LVPTAVTYNTLIDGYCN 57
           M   G  PD ++Y + + G+C E + +EA  +L  M  +G     P  V+Y+T+IDG+  
Sbjct: 156 MPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFK 215

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G ++ A+   DEM+ QG  P   TY+ LI  L   + M +A+ +L+ M +KG++P++ T
Sbjct: 216 EGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRT 275

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YNI+I GYC  G  ++A  L  +M   G+QP ++TY  LI    K  R  EA  +F++ +
Sbjct: 276 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMV 335

Query: 178 AKGMLPDIVMFNALIDGHCTNGNI------------------ERAFSLL----------- 208
            KG  P+  +++ L+ G+ T G +                   RAF++L           
Sbjct: 336 RKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD 395

Query: 209 ------KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
                  EM +  + PD V+Y+T++H  C+ G+VE+A    +QM   G+ P+ ISF    
Sbjct: 396 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISF---- 451

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
               +LI GLC   E    EEL  EM+++GI PD
Sbjct: 452 ---TSLIHGLCSIGEWKKVEELAFEMINRGIHPD 482



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 165/315 (52%), Gaps = 9/315 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+  +   +   +    K G +++A     +M++NGL P  V+Y+T+I   C  G +E A
Sbjct: 373 GIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDA 432

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++MV +G+ P   ++  LIH L    +  + +++  EM  +GI PD+I  N +++ 
Sbjct: 433 VYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDN 492

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +A    D +IH G++P +++Y +LI       +M E+ + F+  ++ G+ PD
Sbjct: 493 LCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPD 552

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +NAL++G+  NG +E A +L +EM R  V    +T N ++HG  + G++  AR L  
Sbjct: 553 SWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYM 612

Query: 245 QMKRRGIKPDHISFNPTRL-TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           +M  RG +         R+ TYN ++ GLC+N   D A  +  ++ SK    D  T+  +
Sbjct: 613 KMVDRGTQ--------LRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIV 664

Query: 304 IEGIASVDKAAESSN 318
           I  +  V +  E+ +
Sbjct: 665 INALLKVGRIDEAKS 679



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 164/351 (46%), Gaps = 45/351 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD  TY   +   CK GR  EA  + + M   G  P +  Y+ L+ GY  KG 
Sbjct: 299 MSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGA 358

Query: 61  L-----------------------------------EMAFSFRDEMVKQGIMPTASTYNL 85
           L                                   + A +   EM + G+ P   +Y+ 
Sbjct: 359 LIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYST 418

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +IH L    ++ +A     +M  +G+ P+ I++  LI+G C  G  KK   L  EMI++G
Sbjct: 419 VIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG 478

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P  +   +++  L K+ R++EA   F+  +  G+ P++V +N LIDG+C  G ++ + 
Sbjct: 479 IHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESI 538

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                M  + + PD  TYN L++G  + G+VE+A  L  +M R+ +K          +T 
Sbjct: 539 KQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVK-------FCAITS 591

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
           N ++ GL +      A EL  +MV +G      TY +++ G+   + VD+A
Sbjct: 592 NIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEA 642



 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 157/313 (50%), Gaps = 16/313 (5%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN--KGNLEMAFS 66
           + Y  G  +   C  GRL+ A        + G     VT N LI G C+  + +  M   
Sbjct: 93  NRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMV 152

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---IVPDSITYNILIN 123
           FR  M + G  P   +YN LI  L +E+K  EA ++L  M   G     P+ ++Y+ +I+
Sbjct: 153 FR-RMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIID 211

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+ + G   KA+ L DEMI +G  P ++TY+SLI  L K   M +A+ + ++   KG++P
Sbjct: 212 GFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMP 271

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +   +N +I G+C+ G +E A  LLK+M    + PD VTY  L+   C+ G+  EAR + 
Sbjct: 272 NTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVF 331

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M R+G KP     N T   Y+ L+ G           +LL  M+  GI  +   +  L
Sbjct: 332 DSMVRKGQKP-----NST--IYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNIL 384

Query: 304 IEGIA---SVDKA 313
           I   A   +VDKA
Sbjct: 385 ICAYAKHGAVDKA 397



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 149/300 (49%), Gaps = 11/300 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ P+  ++ S + G+C  G  ++   +  +M   G+ P A+  NT++D  C +G 
Sbjct: 439 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGR 498

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D ++  G+ P   +YN LI       KM E+      M   G+ PDS TYN 
Sbjct: 499 VVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNA 558

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGY + G  + A +L+ EM  K ++   +T   ++  L +  R++ A +L+   + +G
Sbjct: 559 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRG 618

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I  +N ++ G C N  ++ A  + +++   +   D  T+N +++   + G+++EA+
Sbjct: 619 TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAK 678

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            L   M  RG  P H+      +TY+ +I+   + +EG L E  +L   M   G   D +
Sbjct: 679 SLFSAMVLRGPVP-HV------ITYSLMIKS--RIEEGLLEESDDLFLSMEKNGCAADSH 729



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 121/245 (49%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  +Y + + G C  G+++E+ +  ++M   GL P + TYN L++GY   G +E A
Sbjct: 513 GVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDA 572

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EM ++ +   A T N+++H L    ++V A ++  +M ++G      TYN ++ G
Sbjct: 573 LALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGG 632

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C      +A  + +++  K  +  + T+  +I  L K  R+ EA  LF   + +G +P 
Sbjct: 633 LCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPH 692

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ ++ +I      G +E +  L   M++     D    N ++     +G V  A   L 
Sbjct: 693 VITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLT 752

Query: 245 QMKRR 249
           ++  +
Sbjct: 753 KIDEK 757



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 106/212 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PDS+TY + ++G  K GR+E+A  +  +M    +   A+T N ++ G    G 
Sbjct: 544 MVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGR 603

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +MV +G      TYN ++  L     + EA  M +++  K    D  T+NI
Sbjct: 604 IVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNI 663

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN   + G   +A SL   M+ +G  P ++TY+ +I    ++  + E+D LF +    G
Sbjct: 664 VINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNG 723

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
              D  M N +I      G++ RA + L ++D
Sbjct: 724 CAADSHMLNVIIRRLLEKGDVRRAGTYLTKID 755



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG Q    TY + + G+C+   ++EA RM E ++         T+N +I+     G 
Sbjct: 614 MVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGR 673

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S    MV +G +P   TY+L+I   + E  + E+DD+   M + G   DS   N+
Sbjct: 674 IDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNV 733

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           +I      G+ ++A +   ++  K       T   LI ++S++    E   L E +
Sbjct: 734 IIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALLIPIVSEKKYQKEVKFLPEKY 789



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALI-------DGHCTNGNIERAFSLLKEMDRMKVH--- 217
           +A  LF+  L +     +  FN+++              +   A SL   M R  V+   
Sbjct: 32  DALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMMA 91

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
            +      L+   C  G+++ A        + G +  ++       T N LI+GLC  + 
Sbjct: 92  ANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNV-------TLNQLIKGLCDGKR 144

Query: 278 GDLAEELL-REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            D A +++ R M   G TPD  +Y +LI+G+    K+ E+
Sbjct: 145 TDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEA 184


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 167/307 (54%), Gaps = 10/307 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK---GN 60
           R V PD YT+ + +SG+C+ G+L +A  + + +K  GL P+  TYN+LIDGYC K   GN
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +        EMV+ GI PTA T+ +LI+          A  + +EM ++GI    +TYN 
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  ++   L +EM   G+ P  +T+  ++    K+  M +A+   +    + 
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V++  LIDG+   G +E A ++ + M +  + P+  TYN L+ G  R G    A 
Sbjct: 365 VEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD+MK +GI+ D +       TYN LI  LC   E   A +LL EM   G+ P+  TY
Sbjct: 425 GLLDEMKEKGIEADVV-------TYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTY 477

Query: 301 FSLIEGI 307
            ++I+G 
Sbjct: 478 NTIIQGF 484



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P + T+G  ++G CK      A R+ E+MK+ G+  + VTYN+LI G C++G 
Sbjct: 255 MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGK 314

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      +EM   G+ P   T+  ++     +  M +A+D +  M E+ + PD + Y I
Sbjct: 315 VEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTI 374

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY R G  + A ++ + M  KGI P + TY  LI   S+      A  L +    KG
Sbjct: 375 LIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG 434

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+V +N LI   C  G + +A  LL EM  + + P+ +TYNT++ G C +G ++ A 
Sbjct: 435 IEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAY 494

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M++   + + +       TYN  I+  C+  + D A +LL EM+ K + P+  TY
Sbjct: 495 EIRTRMEKCRKRANVV-------TYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITY 547

Query: 301 FSLIEGI 307
            ++ EG+
Sbjct: 548 ETIKEGM 554



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 141/293 (48%), Gaps = 31/293 (10%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P+  + N L+ G      +++A       +++ + P   T+N +I  L    ++ +A D+
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS---LHDEMIHKGIQPTMLTYTSLIFV 159
            K++   G+ P   TYN LI+GYC+ G A   +    L  EM+  GI PT +T+  LI  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
             K +    A ++FE    +G+   +V +N+LI G C+ G +E    L++EM+ + + P+
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF--------------------- 258
           E+T+  ++ G C++G + +A   +D M  R ++PD + +                     
Sbjct: 334 EITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKE 393

Query: 259 -------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                  +P   TYN LI G  ++ +   A  LL EM  KGI  D  TY  LI
Sbjct: 394 AMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLI 446



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 102/199 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V+PD   Y   + G  + G++E+A  + E M + G+ P   TYN LI G+   G+
Sbjct: 360 MTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM ++GI     TYN+LI  L  + ++ +A  +L EM E G+ P+ +TYN 
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+C  GN K A+ +   M     +  ++TY   I    +  +M EA+ L    L K 
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKC 539

Query: 181 MLPDIVMFNALIDGHCTNG 199
           ++P+ + +  + +G    G
Sbjct: 540 LVPNGITYETIKEGMMEKG 558



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
           A  AF L  E  H   +P+  +  +L+  L    R+  A++ F + L + + PDI  FN 
Sbjct: 138 AYDAFLLAGES-HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNT 196

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ---GKVEEARRLLDQMK 247
           +I G C  G + +A  + K++    + P   TYN+L+ G C++   G +     LL +M 
Sbjct: 197 VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMV 256

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             GI       +PT +T+  LI G CKN     A  +  EM  +GI     TY SLI G+
Sbjct: 257 EAGI-------SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL 309

Query: 308 ASVDKAAE 315
            S  K  E
Sbjct: 310 CSEGKVEE 317


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 177/377 (46%), Gaps = 78/377 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++RG+ P+   Y + + G+CK  +++ A  ML QMK+    P  +TYN LIDG C  G+
Sbjct: 152 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGD 211

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI-------------HELLME-------------- 93
           +E A +F DEM++ G  P   TYN+LI             H L  E              
Sbjct: 212 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYT 271

Query: 94  ---------RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                    +K+ EA  +++++   G  P   TYN L+NG C+ G  ++A  L  +++  
Sbjct: 272 AIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 331

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM----------------------- 181
           G  P ++TYTSLI  L K+ R  EA +LF+    +G+                       
Sbjct: 332 GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQA 391

Query: 182 ------------LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
                       +PD+V  + +IDG    G I  A  + K M+   + P+EV Y+ L+HG
Sbjct: 392 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 451

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+  K++ A  +L QMK+    PD I       TYN LI GLCK+ + + A     EM+
Sbjct: 452 LCKARKMDCALEMLAQMKKAFCTPDTI-------TYNILIDGLCKSGDVEAARAFFDEML 504

Query: 290 SKGITPDDNTYFSLIEG 306
             G  PD  TY  LI G
Sbjct: 505 EAGCKPDVYTYNILISG 521



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 160/303 (52%), Gaps = 7/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   D +TY + V  + K  ++EEA  ++E++  NG  PT  TYN L++G C  G LE A
Sbjct: 262 GCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 321

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                ++V  G  P   TY  LI  L  E++  EA  + KEM  +G+  D++ Y  LI  
Sbjct: 322 IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRE 381

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             + G   +A S++  M   G  P ++T +++I  LSK  R+  A ++F++  A+G+ P+
Sbjct: 382 LLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPN 441

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V+++ALI G C    ++ A  +L +M +    PD +TYN L+ G C+ G VE AR   D
Sbjct: 442 EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFD 501

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G KPD         TYN LI G CK    D A  +  +M S   + +  TY +LI
Sbjct: 502 EMLEAGCKPD-------VYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALI 554

Query: 305 EGI 307
            G+
Sbjct: 555 SGL 557



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 167/352 (47%), Gaps = 43/352 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + G  P   TY + ++G+CK GRLEEA  +L ++ +NG  P  VTY +LIDG   +  
Sbjct: 12  ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR 71

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM  +G+      Y  LI ELL   K+ +A  + K M   G VPD +T + 
Sbjct: 72  SFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLST 131

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G    A  +   M  +G+ P  + Y++LI  L K  +M  A ++        
Sbjct: 132 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 191

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG------ 234
             PD + +N LIDG C +G++E A +   EM      PD  TYN L+ G C+ G      
Sbjct: 192 CTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAS 251

Query: 235 ------------------------------KVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
                                         K+EEA  L++++   G         PT  T
Sbjct: 252 HSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC-------TPTIAT 304

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YNAL+ GLCK    + A +LLR++V  G TPD  TY SLI+G+    ++ E+
Sbjct: 305 YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 356



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 156/293 (53%), Gaps = 8/293 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           ++EEA  ++E++  NG  PT  TYN L++G C  G LE A     ++V  G  P   TY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            LI  L  E++  EA  + KEM  +G+  D++ Y  LI    + G   +A S++  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G  P ++T +++I  LSK  R+  A ++F++  A+G+ P+ V+++ALI G C    ++ A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +L +M +    PD +TYN L+ G C+ G VE AR   D+M   G KPD         T
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPD-------VYT 233

Query: 265 YNALIQGLCKNQEGDLAE-ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN LI G CK    D A   L +E    G T D +TY ++++ +A   K  E+
Sbjct: 234 YNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEA 286



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 163/319 (51%), Gaps = 8/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D+  Y + +  + + G++ +AS + + M  +G VP  VT +T+IDG    G 
Sbjct: 82  MALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGR 141

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +G+ P    Y+ LIH L   RKM  A +ML +M +    PD+ITYN+
Sbjct: 142 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNV 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ-NRMIEADQLFENFLAK 179
           LI+G C+ G+ + A +  DEM+  G +P + TY  LI    K  N    +  L +     
Sbjct: 202 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTIN 261

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G   DI  + A++D    N  IE A +L++++      P   TYN L++G C+ G++EEA
Sbjct: 262 GCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 321

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL ++   G  PD +       TY +LI GL K +    A +L +EM  +G+  D   
Sbjct: 322 IDLLRKIVDNGCTPDVV-------TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVC 374

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y +LI  +    K  ++S+
Sbjct: 375 YTALIRELLQTGKIPQASS 393



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + G  P   TY + ++G+CK GRLEEA  +L ++ +NG  P  VTY +LIDG   +  
Sbjct: 293 ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR 352

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM  +G+      Y  LI ELL   K+ +A  + K M   G VPD +T + 
Sbjct: 353 SFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLST 412

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G    A  +   M  +G+ P  + Y++LI  L K  +M  A ++        
Sbjct: 413 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 472

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +N LIDG C +G++E A +   EM      PD  TYN L+ G C+ G  + A 
Sbjct: 473 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 532

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            + D M       + +       TY ALI GLCK ++   A    + M  +G
Sbjct: 533 GVFDDMSSSRCSANVV-------TYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 138/259 (53%), Gaps = 7/259 (2%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A +  +++   G  PT +TYN L++ L    ++ EA D+L+++ + G  PD +TY  
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  +   + +A+ L  EM  +G+    + YT+LI  L +  ++ +A  +++   + G
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V  + +IDG    G I  A  + K M+   + P+EV Y+ L+HG C+  K++ A 
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 181

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L QMK+    PD I       TYN LI GLCK+ + + A     EM+  G  PD  TY
Sbjct: 182 EMLAQMKKAFCTPDTI-------TYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 234

Query: 301 FSLIEGIASVDKAAESSNS 319
             LI G         +S+S
Sbjct: 235 NILISGFCKAGNTDAASHS 253


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   D  +YG+ + G+CK G    A  +L+++  N + P  V YNT+ID  C    +  A
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EM+ +GI P   TY+ LI    +  K+ +A D+  +M  + I PD  T+NIL+N 
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGML 182
           +C+ G  K+  ++ D M+ +GI+P  +TY SL+  + L K+    +A  +F      G+ 
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVN--KAKSIFNTMAQGGVN 362

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PDI  ++ +I+G C     + A +L KEM R  + PD VTY++L+ G  + G++  A +L
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQL 422

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +DQM  RG+        PT  TYN+++  LCK  + D A  LL ++  KGI P+  TY  
Sbjct: 423 VDQMHDRGVP-------PTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSI 475

Query: 303 LIEGIASVDKAAES 316
           LI+G+    K  ++
Sbjct: 476 LIKGLCQSGKLEDA 489



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 173/323 (53%), Gaps = 28/323 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ PD  TY + +SG C  G+L +A  +  +M    + P   T+N L++ +C  G 
Sbjct: 251 MISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGK 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++   +  D M+KQGI P   TYN L+    + +++ +A  +   M + G+ PD  +Y+I
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     +A +L  EM  K I P ++TY+SLI  LSK  R+  A QL +    +G
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P I  +N+++D  C    +++A +LL ++    + P+  TY+ L+ G C+ GK+E+AR
Sbjct: 431 VPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDAR 490

Query: 241 RLLDQMKRRG--IKPDHIS-----------FN---------------PTRLTYNALIQGL 272
           ++ + +  +G  +  D  +           FN               P   TY  +I  L
Sbjct: 491 KVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSL 550

Query: 273 CKNQEGDLAEELLREMVSKGITP 295
            K  E D+AE+LLREM+++G+ P
Sbjct: 551 FKKDENDMAEKLLREMIARGVRP 573



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 165/308 (53%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++P+       ++  C+ G +  A  +  ++ + G VP  +T+ TLI G C KG 
Sbjct: 111 MEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQ 170

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF F D++V  G      +Y  LIH L    +   A D+L+ +    + P+ + YN 
Sbjct: 171 IQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNT 230

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF L  EMI KGI P ++TY++LI       ++ +A  LF   + + 
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILEN 290

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN L++  C +G ++   ++   M +  + P+ VTYN+LM G C   +V +A+
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + M + G+ PD  S       Y+ +I G CK ++ D A  L +EM  K I PD  TY
Sbjct: 351 SIFNTMAQGGVNPDIQS-------YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTY 403

Query: 301 FSLIEGIA 308
            SLI+G++
Sbjct: 404 SSLIDGLS 411



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 159/315 (50%), Gaps = 7/315 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   P ++ +   +  + K         + ++M+  G+ P  V  N LI+ +C  G +  
Sbjct: 79  RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPF 138

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AFS   +++K G +P   T+  LI  L ++ ++ +A     ++   G   D I+Y  LI+
Sbjct: 139 AFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G  + A  L   +    +QP ++ Y ++I  + K   + EA  LF   ++KG+ P
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISP 258

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V ++ALI G C  G +  A  L  +M    + PD  T+N L++  C+ GK++E + + 
Sbjct: 259 DVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M ++GIKP+ +       TYN+L+ G C  +E + A+ +   M   G+ PD  +Y  +
Sbjct: 319 DMMMKQGIKPNFV-------TYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 304 IEGIASVDKAAESSN 318
           I G   + K  E+ N
Sbjct: 372 INGFCKIKKFDEAMN 386



 Score =  151 bits (381), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 144/287 (50%), Gaps = 35/287 (12%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++PD YT+   V+  CK+G+++E   + + M + G+ P  VTYN+L+DGYC    +  A 
Sbjct: 291 IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAK 350

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S  + M + G+ P   +Y+++I+     +K  EA ++ KEM  K I+PD +TY+ LI+G 
Sbjct: 351 SIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGL 410

Query: 126 CRCGNAKKAFSLHDEM---------------------IH--------------KGIQPTM 150
            + G    A  L D+M                     IH              KGIQP M
Sbjct: 411 SKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNM 470

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            TY+ LI  L +  ++ +A ++FE  L KG   ++  +  +I G C  G    A +LL +
Sbjct: 471 YTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSK 530

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           M+     PD  TY  ++    ++ + + A +LL +M  RG++P  I+
Sbjct: 531 MEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIA 577


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/324 (34%), Positives = 172/324 (53%), Gaps = 14/324 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S  + P S ++   + G+ K     +   +  +M+  GL P   T + L +  CN   
Sbjct: 83  MRSHPIPPIS-SFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNR 141

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +    ++++G +P   TY  LI  L ME ++ EA  +   M + G  P+++TY  
Sbjct: 142 VSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGT 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ------PTMLTYTSLIFVLSKQNRMIEADQLFE 174
           LI G C+ GN   A  LH EM++   Q      P ++TY+ +I  L K  R  EA +LFE
Sbjct: 202 LIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFE 261

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
              A+GM+PD++ ++ LI G C  G  +++  L  EM    V PD VT++ L+   C++G
Sbjct: 262 EMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEG 321

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           KV EA++LL+ M +RGI P+ I       TYN+LI G C   + + A EL   M SKG+ 
Sbjct: 322 KVTEAKKLLEVMIQRGIVPNLI-------TYNSLIDGFCMVGDLNSARELFLSMPSKGLE 374

Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
           PD+ +Y +LI G     K  E+ N
Sbjct: 375 PDEISYTTLINGYCKTWKVKEAMN 398



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 171/344 (49%), Gaps = 42/344 (12%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P   TY   + G+CK GR +EA  + E+MK  G++P  ++Y+TLI G+C  G  + +  
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN------- 119
             DEMV QG+ P   T+++LI  L  E K+ EA  +L+ M ++GIVP+ ITYN       
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC 353

Query: 120 ----------------------------ILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
                                        LINGYC+    K+A +L++EM+  G  P + 
Sbjct: 354 MVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVT 413

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY +L+  L ++ ++ +A +LF      G+  +  ++   +DG C N  +  A  L  E+
Sbjct: 414 TYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNEL 473

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                  +   Y+ L+ G C+ GK+E A  L +++ + G++PD +       TYN +I G
Sbjct: 474 KSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVV-------TYNIMIHG 526

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            CK  + D A  L  +M   G TPD   Y +L+ G    +K  E
Sbjct: 527 FCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEE 570



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 141/277 (50%), Gaps = 7/277 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P+  TY S + G C  G L  A  +   M   GL P  ++Y TLI+GYC    
Sbjct: 333 MIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWK 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  +EM++ G  P  +TY  L+  L  + K+ +A  +   M   G+  +S  Y I
Sbjct: 393 VKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGI 452

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++G C+     +A  L +E+     +  +  Y+ LI  L K  ++  A +LFE    +G
Sbjct: 453 FLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEG 512

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +N +I G C  G ++ A  L ++M+     PD + YNTL+ G C   K+EE  
Sbjct: 513 LQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVI 572

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           +LL +M ++ + P+  S          ++  LCK+++
Sbjct: 573 KLLHKMVQKDVSPNAAS-------CTIVVDMLCKDEK 602



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 134/269 (49%), Gaps = 15/269 (5%)

Query: 56  CNKGNLE--MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           C  GN+    AF F D M++   +P  S++N L+  L       +   +  EM   G+ P
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  T +IL N  C      +A +    ++ +G  P ++TYT+LI  L  ++R+ EA +LF
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLF 184

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR------MKVHPDEVTYNTLM 227
                 G  P+ V +  LI G C  GN+  A  L KEM        +   P  +TY+ ++
Sbjct: 185 LRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIII 244

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
            G C+ G+ +EA+ L ++MK +G+ PD IS       Y+ LI G C   + D ++ L  E
Sbjct: 245 DGLCKVGREDEAKELFEEMKAQGMIPDVIS-------YSTLIHGFCCAGKWDQSKHLFDE 297

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAES 316
           MV +G+ PD  T+  LI+ +    K  E+
Sbjct: 298 MVDQGVQPDMVTFSVLIDTLCKEGKVTEA 326



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++PD  +Y + ++G CK  +++EA  +  +M + G  P   TY TL+ G   KG 
Sbjct: 368 MPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M   G+   +  Y + +  L     + EA ++  E+       +   Y+ 
Sbjct: 428 VGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSC 487

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  + A+ L +++  +G+QP ++TY  +I    K  ++  A+ LFE     G
Sbjct: 488 LIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENG 547

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI+ +N L+ G C    +E    LL +M +  V P+  +   ++   C+  K ++  
Sbjct: 548 CTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFV 607

Query: 241 RLLDQM 246
            LL + 
Sbjct: 608 DLLPKF 613


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 162/299 (54%), Gaps = 7/299 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+Y+    V G+CKEG+LEE  +++E     G +P  + YNTLIDGYC KG++EMA    
Sbjct: 203 DNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLF 262

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            E+  +G +PT  TY  +I+    +      D +L EM  +G+  +   YN +I+   + 
Sbjct: 263 IELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKH 322

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G+  KA    + MI  G +P ++TY +LI    +  ++ EADQL E  L KG++P+   +
Sbjct: 323 GHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSY 382

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             LI  +C  G  +RA + L EM      PD VTY  L+HG    G+V+ A  + ++M  
Sbjct: 383 TPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLE 442

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           RG+ PD          YN L+ GLCK  +   A+ LL EM+ + + PD   Y +L++G 
Sbjct: 443 RGVFPD-------AGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGF 494



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 170/302 (56%), Gaps = 11/302 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY + +SG C++G++ EA ++LEQ    GL+P   +Y  LI  YC +G  + A
Sbjct: 339 GCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRA 398

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            ++  EM ++G  P   TY  L+H L++  ++  A  + ++M E+G+ PD+  YNIL++G
Sbjct: 399 SNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSG 458

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  L  EM+ + + P    Y +L+    +   + EA +LFE  + KGM P 
Sbjct: 459 LCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPG 518

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +NA+I G+C  G ++ A + +  M +  + PDE TY+T++ G  +Q  ++ A+++  
Sbjct: 519 IVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFR 578

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDNTYFS 302
           +M +   KP+ +       TY +LI G C+  +GDL   L   REM + G+ P+  TY  
Sbjct: 579 EMVKMKCKPNVV-------TYTSLINGFCR--KGDLHRSLKIFREMQACGLVPNVVTYSI 629

Query: 303 LI 304
           LI
Sbjct: 630 LI 631



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 161/336 (47%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K +G  P   TYG+ ++G CK+G  +   R+L +M   GL      YNT+ID     G+
Sbjct: 265 LKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGH 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M++ G  P   TYN LI     + K+ EAD +L++   KG++P+  +Y  
Sbjct: 325 IVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTP 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ G   +A +   EM  +G +P ++TY +L+  L     +  A  + E  L +G
Sbjct: 385 LIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERG 444

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD  ++N L+ G C    +  A  LL EM    V PD   Y TL+ G  R G ++EAR
Sbjct: 445 VFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEAR 504

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           +L +    +G+ P  + +N                            P   TY+ +I G 
Sbjct: 505 KLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGY 564

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            K  + D A+++ REMV     P+  TY SLI G  
Sbjct: 565 VKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFC 600



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 165/360 (45%), Gaps = 42/360 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +PD  TYG+ V G+   G ++ A  + E+M E G+ P A  YN L+ G C K  
Sbjct: 405 MTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFK 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+ Q ++P A  Y  L+   +    + EA  + +   EKG+ P  + YN 
Sbjct: 465 LPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNA 524

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G  K A +  + M  + + P   TY+++I    KQ+ +  A ++F   +   
Sbjct: 525 MIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMK 584

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V + +LI+G C  G++ R+  + +EM    + P+ VTY+ L+   C++ K+ +A 
Sbjct: 585 CKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAA 644

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------------------- 259
              ++M      P+ ++FN                                         
Sbjct: 645 SFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGW 704

Query: 260 -PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            P    YN+++  LC+      A +L  +M SKG  PD  ++ +L+ G+    ++ E  N
Sbjct: 705 APRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKEWKN 764



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 130/292 (44%), Gaps = 49/292 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V PD++ Y + V G  + G L+EA ++ E   E G+ P  V YN +I GYC  G 
Sbjct: 475 MLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGM 534

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  + M K+ + P   TY+ +I   + +  +  A  M +EM +    P+ +TY  
Sbjct: 535 MKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTS 594

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+CR G+  ++  +  EM   G+ P ++TY+ LI    K+ ++I+A   FE  L   
Sbjct: 595 LINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNK 654

Query: 181 MLPDIVMFNALIDGH--------------------------------------------- 195
            +P+ V FN L++G                                              
Sbjct: 655 CVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSI 714

Query: 196 ----CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
               C  G    A  L  +M      PD V++  L+HG C +G+ +E + ++
Sbjct: 715 LICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKEWKNIV 766



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 145/340 (42%), Gaps = 47/340 (13%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA---- 64
           + + Y S +  + +     E   +LE M+   + PT    + +I  Y + G +E A    
Sbjct: 93  NGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELY 152

Query: 65  -FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
            F  +       ++   S  N+L+    +E      D+ML+  G      D+ +  I++ 
Sbjct: 153 YFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVK 212

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G  ++   L ++   +G  P ++ Y +LI    K+  M  A+ LF     KG LP
Sbjct: 213 GLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLP 272

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMD-----------------RMK----------- 215
            +  + A+I+G C  G+ +    LL EM+                 R K           
Sbjct: 273 TVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETI 332

Query: 216 -------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
                    PD VTYNTL+ G CR GKV EA +LL+Q   +G+ P+  S+ P       L
Sbjct: 333 EGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTP-------L 385

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           I   CK    D A   L EM  +G  PD  TY +L+ G+ 
Sbjct: 386 IHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLV 425



 Score = 38.9 bits (89), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PDS ++ + + G+C EGR +E   ++        +  AV Y++++D Y  +G 
Sbjct: 734 MTSKGCIPDSVSFVALLHGVCLEGRSKEWKNIVSCNLNERELQIAVNYSSILDQYLPQGT 793

Query: 61  LEMA 64
            E +
Sbjct: 794 SEAS 797


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 177/318 (55%), Gaps = 9/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD+ T+ + +SG+C+EGR++EA R+L +     L P   +Y +LI G+C +G 
Sbjct: 390 MFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGE 449

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A +   EM+++G  P   T+  LIH L++  ++ EA  + ++M  + ++PD+  YN+
Sbjct: 450 VIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNV 509

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+      A +L +EM+ + + P    YT+LI    +   + EA ++FE    KG
Sbjct: 510 LISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKG 569

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V +NA+I G+C  G +  A   +  M ++   PDE TY TL+ G  +QG +  A 
Sbjct: 570 IHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGAL 629

Query: 241 RLL-DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            LL D MKRR          P  + Y++LI G CK  + D AE L   M S+G+ P+  T
Sbjct: 630 SLLCDMMKRR--------CQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVIT 681

Query: 300 YFSLIEGIASVDKAAESS 317
           Y  LI  +   DK   ++
Sbjct: 682 YTILIGSLFKKDKVVRAA 699



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D Y+    V G+C EG +E+  +++E     G VP AV YN LIDGYC +G++       
Sbjct: 258 DDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLL 317

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM  +G++PT  TY  L+  L  +  + +   +L EM E+ + P+   YN +I+  C+C
Sbjct: 318 GEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKC 377

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            +A +A  +  +M   G  P  +T+++LI  L ++ R+ EA++L        + P++  +
Sbjct: 378 RSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSY 437

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            +LI G C  G +  A +LL EM      PD VT+  L+HG    G+V EA  + ++M  
Sbjct: 438 TSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAA 497

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           R + PD          YN LI GLCK +    A  L+ EM+ + + PD   Y +LI+G  
Sbjct: 498 RQLLPDAN-------IYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFI 550

Query: 309 ---SVDKA 313
              S+D+A
Sbjct: 551 RNESLDEA 558



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 168/308 (54%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G+ P   TYG+ +S + ++G LE+ + +L +M+E  L P    YN++ID  C   +
Sbjct: 320 MEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRS 379

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M   G  P A T++ LI  L  E ++ EA+ +L+E     + P+  +Y  
Sbjct: 380 ASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTS 439

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G    A +L  EM+ +G  P ++T+ +LI  L    ++ EA  + E   A+ 
Sbjct: 440 LIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQ 499

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD  ++N LI G C    +  A +L++EM    VHPD+  Y TL+ G  R   ++EAR
Sbjct: 500 LLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEAR 559

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ + M+++GI PD +        YNA+I+G C+    + A E +  M   G  PD+ TY
Sbjct: 560 KIFEFMEQKGIHPDVVG-------YNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTY 612

Query: 301 FSLIEGIA 308
            +LI G A
Sbjct: 613 TTLIGGYA 620



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 153/302 (50%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P++  Y   + G C+ G +     +L +M+  GL+PT VTY TL+     KG+LE  
Sbjct: 289 GCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKI 348

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM ++ + P    YN +I  L   R   +A  +LK+M   G  PD+IT++ LI+G
Sbjct: 349 ASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISG 408

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  ++A  L  E     + P + +YTSLI     +  +I A  L    + +G  PD
Sbjct: 409 LCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPD 468

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F ALI G    G +  A  + ++M   ++ PD   YN L+ G C++  +  AR L++
Sbjct: 469 VVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIE 528

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  + + PD       +  Y  LI G  +N+  D A ++   M  KGI PD   Y ++I
Sbjct: 529 EMLEQNVHPD-------KYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMI 581

Query: 305 EG 306
           +G
Sbjct: 582 KG 583



 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 158/358 (44%), Gaps = 43/358 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  T+G+ + G+   G++ EA  + E+M    L+P A  YN LI G C K  
Sbjct: 460 MMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKM 519

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +  +EM++Q + P    Y  LI   +    + EA  + + M +KGI PD + YN 
Sbjct: 520 LPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNA 579

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G   +A      M   G  P   TYT+LI   +KQ  +  A  L  + + + 
Sbjct: 580 MIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRR 639

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +++LI+G+C  G+ + A  L   M+   + P+ +TY  L+    ++ KV  A 
Sbjct: 640 CQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAA 699

Query: 241 RLLDQMKRRGIKPDHISF------------------------------------------ 258
              + M      P+  +                                           
Sbjct: 700 MYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDR 759

Query: 259 -NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            +P    YNA+I  LC +     A +L  +M +KG  PD  T+ SL+ G  SV K+ E
Sbjct: 760 CDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSRE 817



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 125/293 (42%), Gaps = 50/293 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V PD Y Y + + G  +   L+EA ++ E M++ G+ P  V YN +I GYC  G 
Sbjct: 530 MLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGM 589

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M K G +P   TY  LI     +  +  A  +L +M ++   P+ + Y+ 
Sbjct: 590 MNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSS 649

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE------ 174
           LINGYC+ G+   A  L   M  +G+ P ++TYT LI  L K+++++ A   FE      
Sbjct: 650 LINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQ 709

Query: 175 -------------------------------NFLAKGMLPDIV-------------MFNA 190
                                          N   KG L DI               +NA
Sbjct: 710 CSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNA 769

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +I   C +  +  A  L  +M      PD  T+ +L++G C  GK  E R +L
Sbjct: 770 IIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTIL 822



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 131/306 (42%), Gaps = 17/306 (5%)

Query: 20  MCKEGRLEEASRMLEQMKENGL---VPTAVTYNTLIDGYCNKG----NLEMAFSFRDEMV 72
           + + GR +     L  M   G    VPT      L+  Y + G      EM    R+   
Sbjct: 160 LARAGRFDAVDATLRDMSLAGAAAAVPTRACLGALVATYADAGMEAKAAEMCQRAREH-- 217

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
             G +P A+  N L+  L+  R+  +A  +  EM  +    D  +  +++ G C  G  +
Sbjct: 218 -HGTLPGATHTNRLLRLLVERRRWDDARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVE 276

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           K   L +     G  P  + Y  LI    ++  +     L     AKG+LP +V +  L+
Sbjct: 277 KGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLM 336

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
                 G++E+  SLL EM   ++ P+   YN+++   C+     +A  +L QM   G  
Sbjct: 337 SWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCD 396

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           PD I+F+        LI GLC+      AE LLRE     + P+ ++Y SLI G     +
Sbjct: 397 PDAITFS-------TLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGE 449

Query: 313 AAESSN 318
              +SN
Sbjct: 450 VIVASN 455



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 85/225 (37%), Gaps = 50/225 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY + + G  K+G +  A  +L  M +    P  V Y++LI+GYC  G+
Sbjct: 600 MRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGD 659

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A      M  QG+ P   TY +LI  L  + K+V A    + M      P+  T + 
Sbjct: 660 TDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHS 719

Query: 121 LINGYC---------------------------------RCGNAKKAFS----------- 136
           L+ G C                                 RC     A++           
Sbjct: 720 LVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNM 779

Query: 137 ------LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
                 L ++M +KG +P   T+ SL++      +  E   +  N
Sbjct: 780 LGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTILPN 824


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 168/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+ Y Y  ++  +C++ ++EEA +M E MK++G++P   TY+ +IDGYC  GN
Sbjct: 225 MTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGN 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+    E++   ++P    +  L+      R++V A  +   M + G+ P+   YN 
Sbjct: 285 VRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNC 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN  +A  L  EM    + P + TYT LI  L  ++++ EA++LF+    + 
Sbjct: 345 LIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNER 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    +N+LI G+C   N+E+A  L  EM    V P+ +T++TL+ G C    ++ A 
Sbjct: 405 IFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAM 464

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +GI PD +       TY ALI    K      A  L  +M+  GI P+D+T+
Sbjct: 465 GLYFEMTIKGIVPDVV-------TYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTF 517

Query: 301 FSLIEGI 307
             L++G 
Sbjct: 518 ACLVDGF 524



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 7/303 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PDS    S ++G+ +  R +      + M   GLVP    Y  L      +G        
Sbjct: 162 PDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKL 221

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            DEM   GI P    Y + I +L  + KM EA+ M + M + G++P+  TY+ +I+GYC+
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCK 281

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN ++A+ L+ E++   + P ++ + +L+    K   ++ A  LF + +  G+ P++ +
Sbjct: 282 TGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYV 341

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI GHC +GN+  A  LL EM+ + + PD  TY  L++G C + +V EA RL  +MK
Sbjct: 342 YNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMK 401

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              I        P+  TYN+LI G CK    + A +L  EM + G+ P+  T+ +LI+G 
Sbjct: 402 NERI-------FPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGY 454

Query: 308 ASV 310
            +V
Sbjct: 455 CNV 457



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 152/298 (51%), Gaps = 11/298 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+ Y Y   + G CK G + EA  +L +M+   L P   TY  LI+G C +  
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQ 389

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M  + I P+++TYN LIH    E  M +A D+  EM   G+ P+ IT++ 
Sbjct: 390 VAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFST 449

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC   + K A  L+ EM  KGI P ++TYT+LI    K+  M EA +L+ + L  G
Sbjct: 450 LIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAG 509

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   F  L+DG    G +  A    +E ++ +   + V +  L+ G C+ G +  A 
Sbjct: 510 IHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRAS 569

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE--MVSKGITPD 296
           R    M+  GI PD  S       Y ++++G    QE  + + ++ +  M+  GI P+
Sbjct: 570 RFFSDMRSCGITPDICS-------YVSMLKG--HLQEKRITDTMMLQCDMIKTGILPN 618



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 7/212 (3%)

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M  +G+VPD   Y +L     + G   K   L DEM   GI+P +  YT  I  L + N+
Sbjct: 190 MISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNK 249

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           M EA+++FE     G+LP++  ++A+IDG+C  GN+ +A+ L KE+   ++ P+ V + T
Sbjct: 250 MEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGT 309

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+ G C+  ++  AR L   M + G+       +P    YN LI G CK+     A  LL
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGV-------DPNLYVYNCLIHGHCKSGNMLEAVGLL 362

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            EM S  ++PD  TY  LI G+   D+ AE++
Sbjct: 363 SEMESLNLSPDVFTYTILINGLCIEDQVAEAN 394



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 130/286 (45%), Gaps = 35/286 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S  + PD +TY   ++G+C E ++ EA+R+ ++MK   + P++ TYN+LI GYC + N
Sbjct: 365 MESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYN 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM   G+ P   T++ LI      R +  A  +  EM  KGIVPD +TY  
Sbjct: 425 MEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTA 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM-------------- 166
           LI+ + +  N K+A  L+ +M+  GI P   T+  L+    K+ R+              
Sbjct: 485 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQR 544

Query: 167 ---------------------IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                + A + F +  + G+ PDI  + +++ GH     I    
Sbjct: 545 SCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTM 604

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
            L  +M +  + P+ +    L       G V+ A  L +  + + +
Sbjct: 605 MLQCDMIKTGILPNLLVNQLLARFYQANGYVKSACFLTNSSRLKTV 650



 Score = 39.7 bits (91), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 55/232 (23%)

Query: 127 RCGNAKKAFSLHDEMIHKGIQPT--MLTYTSLIFVLSKQNRMIEADQLFENFLAK----- 179
           +C +A++AF L +      +  +  + +++++I VL+  ++   A  L ++ + +     
Sbjct: 50  KCRSAEEAFKLFETSSRSRVSKSNDLQSFSAVIHVLTGAHKYTLARCLIKSLIERLKRHS 109

Query: 180 ----------GMLPDIV-------MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
                       L DI        +F+ LI      G  E A  + +EM   K  PD   
Sbjct: 110 EPSNMSHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEEALWVSREM---KCSPDSKA 166

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISF----------------------- 258
             ++++G  R+ + +        M  RG+ PD HI F                       
Sbjct: 167 CLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMT 226

Query: 259 ----NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                P    Y   I  LC++ + + AE++   M   G+ P+  TY ++I+G
Sbjct: 227 SLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDG 278


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 173/312 (55%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD++TY S + G CK G L+ A  M ++M ++G  P +VTY+ LI+G C++G LE A
Sbjct: 232 GACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEA 291

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM+ +GI PT   Y + I  L    +  EA  +L +M ++G  P+  TY  LI+G
Sbjct: 292 MDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISG 351

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             R G  + A  ++ +M+  G+ PT +TY++LI  L  + R   A  +FE  L+   LP+
Sbjct: 352 LSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPN 411

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +N +I G C+ G I++A ++  +M +    P+ +TYN ++H   +QG +  A RLL+
Sbjct: 412 TETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLE 471

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            MK  G+K D         TY  LI G  +  + + A  L  EMV  GI+P+  TY ++I
Sbjct: 472 MMKGNGLKLD-------TWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAII 524

Query: 305 EGIASVDKAAES 316
            G  +V K  ++
Sbjct: 525 NGYLTVAKVDDA 536



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 176/379 (46%), Gaps = 63/379 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT---------------- 44
           M   G  P+S TY + ++G+C EGRLEEA  MLE+M + G+ PT                
Sbjct: 263 MVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGR 322

Query: 45  ---AV----------------TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
              AV                TY  LI G    G  E+A     +M+  G++PTA TY+ 
Sbjct: 323 SCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSA 382

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI++L +E +   A  + + M     +P++ TYN++I G+C  G  +KA ++ D+M+  G
Sbjct: 383 LINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAG 442

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P ++TY  +I +  KQ  M  A +L E     G+  D   +  LI G    G +E AF
Sbjct: 443 PSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAF 502

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
           SL  EM    + P+ VTYN +++G     KV++A  L  +M   G  P   ++N      
Sbjct: 503 SLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGF 562

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P  +TY + I GLCKN    LA ++  EM  +   P+ 
Sbjct: 563 SKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNL 622

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY SLI+G+    +A ++
Sbjct: 623 CTYSSLIDGLCQEGQAEDA 641



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 171/341 (50%), Gaps = 46/341 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P + TY + ++ +  EGR E A  + E M  +  +P   TYN +I G+C+ G 
Sbjct: 368 MLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGY 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  D+M+K G  P   TYN++IH    +  M  A  +L+ M   G+  D+ TY  
Sbjct: 428 IQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYAN 487

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---------------FV------ 159
           LI+G+ R G  + AFSL +EM+  GI P ++TY ++I               F       
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG 547

Query: 160 --------------LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                          SK NR+ EA+      + +G+LP+++ + + IDG C NG    AF
Sbjct: 548 NVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAF 607

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +  EM +    P+  TY++L+ G C++G+ E+A RLLD     G +P+         TY
Sbjct: 608 KIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPN-------VDTY 656

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             L++GLC       A++L+  M  KG+ P +  Y +L+ G
Sbjct: 657 TTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVG 697



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 166/346 (47%), Gaps = 38/346 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G++ D++TY + +SG  + G+LE A  +  +M E+G+ P  VTYN +I+GY     
Sbjct: 473 MKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAK 532

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +MV+ G +P++ TYN++I       ++ EA++   +M ++G++P+ ITY  
Sbjct: 533 VDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTS 592

Query: 121 LINGYCRCGNAKKAFSLHDEM-------------------------------IHKGIQPT 149
            I+G C+ G    AF +  EM                               +  G +P 
Sbjct: 593 FIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPN 652

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + TYT+L+  L  + R  EADQL E+   KG+ P   ++ AL+ G C N  +E A  +  
Sbjct: 653 VDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFD 712

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M      P    Y  L+   C+    ++A+ +   M ++        +N   + +  L+
Sbjct: 713 SMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKK-------HWNSDEVVWTVLL 765

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            GL K  E DL+ ELL  M S+  T +  T   L   ++++  + E
Sbjct: 766 DGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLARELSALGCSIE 811



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM+  GI P   T+N +I  L  + K+ EA+ ++  +   G  PD+ TY  LI G+C+ G
Sbjct: 192 EMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNG 251

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           N   AF + D M+  G  P  +TY++LI  L  + R+ EA  + E  + KG+ P +  + 
Sbjct: 252 NLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYT 311

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
             I   C  G    A  LL +M +    P+  TY  L+ G  R GK E A  +  +M   
Sbjct: 312 IPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLAD 371

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           G+        PT +TY+ALI  L      + A  +   M+S    P+  TY  +I+G  S
Sbjct: 372 GLV-------PTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCS 424

Query: 310 V 310
           +
Sbjct: 425 I 425



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM    + P+  T+N ++   C +GKV+EA  ++  +   G  PD         TY +LI
Sbjct: 192 EMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPD-------TFTYTSLI 244

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            G CKN   DLA E+   MV  G  P+  TY +LI G+ S  +  E+
Sbjct: 245 IGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEA 291


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 180/332 (54%), Gaps = 28/332 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + ++G+C EGR+ EA  ++++M E G  PT +T N L++G C  G +  A
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV+ G  P   TY  ++  +    +   A ++L++M E+ I  D++ Y+I+I+G
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   AF+L +EM  KG +  ++ YT+LI       R  +  +L  + + + + PD
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ALID     G +  A  L KEM +  + PD VTY +L+ G C++ ++++A  +LD
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  +G  P+  +FN                               +TYN LIQG C+  
Sbjct: 377 LMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + ++A+EL +EMVS+ + PD  +Y  L++G+ 
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 170/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG  +  MCK G+   A  +L +M+E  +   AV Y+ +IDG C  G+
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF+  +EM  +G       Y  LI       +  +   +L++M ++ I PD + ++ 
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G  ++A  LH EMI +GI P  +TYTSLI    K+N++ +A+ + +  ++KG
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  FN LI+G+C    I+    L ++M    V  D VTYNTL+ G C  GK+E A+
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  R ++PD +S       Y  L+ GLC N E + A E+  ++    +  D   Y
Sbjct: 443 ELFQEMVSRRVRPDIVS-------YKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIY 495

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+ +  K  ++ +
Sbjct: 496 NIIIHGMCNASKVDDAWD 513



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 161/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G + D   Y + + G C  GR ++ +++L  M +  + P  V ++ LID +  +G 
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+++GI P   TY  LI     E ++ +A+ ML  M  KG  P+  T+NI
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+         L  +M  +G+    +TY +LI    +  ++  A +LF+  +++ 
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +  L+DG C NG  E+A  + +++++ K+  D   YN ++HG C   KV++A 
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD         TYN +I GLCK      A+ L R+M   G +P+  TY
Sbjct: 513 DLFCSLPLKGVKPDV-------KTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565

Query: 301 FSLIEG 306
             LI  
Sbjct: 566 NILIRA 571



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 162/312 (51%), Gaps = 14/312 (4%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P    +    S + +  + +    + +QM+  G+     T + +I+  C    L +AFS
Sbjct: 69  RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFS 128

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +++K G  P   T++ LI+ L +E ++ EA +++  M E G  P  IT N L+NG C
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLC 188

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G    A  L D M+  G QP  +TY  ++ V+ K  +   A +L      + +  D V
Sbjct: 189 LNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAV 248

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ +IDG C +G+++ AF+L  EM+      D + Y TL+ G C  G+ ++  +LL  M
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLI 304
            +R I PD ++F       +ALI   C  +EG L  AEEL +EM+ +GI+PD  TY SLI
Sbjct: 309 IKRKITPDVVAF-------SALID--CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359

Query: 305 EGIA---SVDKA 313
           +G      +DKA
Sbjct: 360 DGFCKENQLDKA 371



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 135/254 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD+ TY S + G CKE +L++A+ ML+ M   G  P   T+N LI+GYC    
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       +M  +G++    TYN LI       K+  A ++ +EM  + + PD ++Y I
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + +++    ++  +  Y  +I  +   +++ +A  LF +   KG
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N +I G C  G++  A  L ++M+     P+  TYN L+     +G   ++ 
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSA 582

Query: 241 RLLDQMKRRGIKPD 254
           +L++++KR G   D
Sbjct: 583 KLIEEIKRCGFSVD 596



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 1/205 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV  D+ TY + + G C+ G+LE A  + ++M    + P  V+Y  L+DG C+ G 
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    +++ K  +      YN++IH +    K+ +A D+   +  KG+ PD  TYNI
Sbjct: 473 PEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C+ G+  +A  L  +M   G  P   TY  LI     +    ++ +L E     G
Sbjct: 533 MIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
              D      ++D   ++G ++++F
Sbjct: 593 FSVDASTVKMVVD-MLSDGRLKKSF 616


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 167/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+  D YTY S + G+ + G  +E +  L  M + G  P A T+  LIDG C +G 
Sbjct: 207 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M  +G  P   TYN L++ L +  ++ +A  + + + ++GI  +  +YNI
Sbjct: 267 VGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNI 326

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +AF L +EM  KG++P+ +TY +LI  L +  R+  A +LF      G
Sbjct: 327 LINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 386

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               +  +  L+DG C NG++E A  L + + + +  P+   ++ L+ G CR GK+EEA 
Sbjct: 387 QFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAW 446

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +  D++ + G++PD I+       YN LI GLC       A +LL +M  KG  PD  T+
Sbjct: 447 KQFDEISKNGLEPDTIA-------YNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITF 499

Query: 301 FSLIEGI 307
             +I+ +
Sbjct: 500 NVIIQNL 506



 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 8/311 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD++T+   + G+CKEG++ EA ++LE M   G  P  +TYNTL++G C  G 
Sbjct: 242 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQ 301

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    + +  +GI     +YN+LI+    ++K+ EA  + +EM  KG+ P ++TYN 
Sbjct: 302 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNT 361

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ G  + A  L  EM   G    + TY  L+  L K   + EA  LF++     
Sbjct: 362 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTE 421

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I +F+ L+DG C  G +E A+    E+ +  + PD + YN L++G C +G + EA 
Sbjct: 422 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAV 481

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL QM+ +G  PD I       T+N +IQ L K  E   A +LL EM ++  +PD+   
Sbjct: 482 KLLWQMEEKGCLPDSI-------TFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVT 534

Query: 301 FSLIEGIASVD 311
            S++  +AS D
Sbjct: 535 -SMLLCLASFD 544



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 153/301 (50%), Gaps = 8/301 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG +PD+ T  + V G+  E  + +A ++ ++M E GL   A TY  LI+G C      +
Sbjct: 71  RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGL 130

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    ++M K        TY ++I  L  +    EA DM  EM   GI+PD + Y+ L++
Sbjct: 131 AIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMD 189

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G CR G  K+A     EM  +GI   + TY SLI  LS+     E        + +G  P
Sbjct: 190 GLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP 249

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   F  LIDG C  G +  A  +L+ M      PD +TYNTLM+G C  G++E+A +L 
Sbjct: 250 DAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLF 309

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + +  RGIK +  S       YN LI G CK+Q+ D A  L  EM  KG+ P   TY +L
Sbjct: 310 ESLADRGIKLNVFS-------YNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTL 362

Query: 304 I 304
           I
Sbjct: 363 I 363



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 7/308 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D +TYG  +  +CK+G   EA  M  +M   G++P  V Y++L+DG C  G L+ A  F 
Sbjct: 145 DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 204

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM  +GI     TYN LIH L       E    L  M ++G  PD+ T+ ILI+G C+ 
Sbjct: 205 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 264

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G   +A  + + M HKG +P +LTY +L+  L    ++ +A +LFE+   +G+  ++  +
Sbjct: 265 GKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSY 324

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LI+G+C +  I+ AF L +EM    + P  VTYNTL+   C+ G+V  A++L  +M+ 
Sbjct: 325 NILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT 384

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G     +  +    TY  L+ GLCKN   + A +L + +      P+   +  L++G+ 
Sbjct: 385 CG---QFLKLS----TYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMC 437

Query: 309 SVDKAAES 316
              K  E+
Sbjct: 438 RAGKLEEA 445



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 161/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D+ TYG  ++G+CK  +   A ++ E+MK N       TY  +ID  C  G 
Sbjct: 103 MTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGN-CKGDVFTYGMIIDSLCKDGM 161

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+  GI+P    Y+ L+  L    ++ EA +  KEM  +GI  D  TYN 
Sbjct: 162 TTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNS 221

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  R G  K+     + M+ +G  P   T+T LI  L K+ ++ EA Q+ E    KG
Sbjct: 222 LIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKG 281

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI+ +N L++G C  G +E A  L + +    +  +  +YN L++G C+  K++EA 
Sbjct: 282 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF 341

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL ++M+ +G+KP  +       TYN LI  LC++     A++L  EM + G     +TY
Sbjct: 342 RLFEEMRPKGLKPSTV-------TYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTY 394

Query: 301 FSLIEGIA 308
             L++G+ 
Sbjct: 395 CVLLDGLC 402



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 10/247 (4%)

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           +K+G  P A T   L+  + ME  + +A  +  EM EKG+  D+ TY ILING C+    
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 132 KKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             A  LH++M  KG  +  + TY  +I  L K     EA  +F   +  G+LPD+V++++
Sbjct: 129 GLAIKLHEKM--KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           L+DG C  G ++ A    KEM+   +  D  TYN+L+HG  R G  +E    L+ M  RG
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 246

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                  F+P   T+  LI GLCK  +   A+++L  M  KG  PD  TY +L+ G+  V
Sbjct: 247 -------FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLV 299

Query: 311 DKAAESS 317
            +  +++
Sbjct: 300 GQLEDAT 306



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY   + G+CK G LEEA  + + +K+    P    ++ L+DG C  G LE A+   DE+
Sbjct: 393 TYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 452

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
            K G+ P    YN+LI+ L  +  + EA  +L +M EKG +PDSIT+N++I    +    
Sbjct: 453 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 512

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            +A  L +EM ++   P     + L+ + S   +   A     N L KG+
Sbjct: 513 HEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 562


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 180/332 (54%), Gaps = 28/332 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + ++G+C EGR+ EA  ++++M E G  PT +T N L++G C  G +  A
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV+ G  P   TY  ++  +    +   A ++L++M E+ I  D++ Y+I+I+G
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   AF+L +EM  KG +  ++ YT+LI       R  +  +L  + + + + PD
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ALID     G +  A  L KEM +  + PD VTY +L+ G C++ ++++A  +LD
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  +G  P+  +FN                               +TYN LIQG C+  
Sbjct: 377 LMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + ++A+EL +EMVS+ + PD  +Y  L++G+ 
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 170/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG  +  MCK G+   A  +L +M+E  +   AV Y+ +IDG C  G+
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF+  +EM  +G       Y  LI       +  +   +L++M ++ I PD + ++ 
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G  ++A  LH EMI +GI P  +TYTSLI    K+N++ +A+ + +  ++KG
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  FN LI+G+C    I+    L ++M    V  D VTYNTL+ G C  GK+E A+
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  R ++PD +S       Y  L+ GLC N E + A E+  ++    +  D   Y
Sbjct: 443 ELFQEMVSRRVRPDIVS-------YKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIY 495

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+ +  K  ++ +
Sbjct: 496 NIIIHGMCNASKVDDAWD 513



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G + D   Y + + G C  GR ++ +++L  M +  + P  V ++ LID +  +G 
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+++GI P   TY  LI     E ++ +A+ ML  M  KG  P+  T+NI
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+         L  +M  +G+    +TY +LI    +  ++  A +LF+  +++ 
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +  L+DG C NG  E+A  + +++++ K+  D   YN ++HG C   KV++A 
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KPD         TYN +I GLCK      A+ L R+M   G +P+  TY
Sbjct: 513 DLFCSLPLKGVKPD-------VKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565

Query: 301 FSLIEGIASVDKAAESS 317
             LI        A +S+
Sbjct: 566 NILIRAHLGEGDATKSA 582



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 162/312 (51%), Gaps = 14/312 (4%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P    +    S + +  + +    + +QM+  G+     T + +I+  C    L +AFS
Sbjct: 69  RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFS 128

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +++K G  P   T++ LI+ L +E ++ EA +++  M E G  P  IT N L+NG C
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLC 188

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G    A  L D M+  G QP  +TY  ++ V+ K  +   A +L      + +  D V
Sbjct: 189 LNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAV 248

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ +IDG C +G+++ AF+L  EM+      D + Y TL+ G C  G+ ++  +LL  M
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLI 304
            +R I PD ++F       +ALI   C  +EG L  AEEL +EM+ +GI+PD  TY SLI
Sbjct: 309 IKRKITPDVVAF-------SALID--CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359

Query: 305 EGIA---SVDKA 313
           +G      +DKA
Sbjct: 360 DGFCKENQLDKA 371



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 161/324 (49%), Gaps = 17/324 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD+ TY S + G CKE +L++A+ ML+ M   G  P   T+N LI+GYC    
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       +M  +G++    TYN LI       K+  A ++ +EM  + + PD ++Y I
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  +KA  + +++    ++  +  Y  +I  +   +++ +A  LF +   KG
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N +I G C  G++  A  L ++M+     P+  TYN L+     +G   ++ 
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSA 582

Query: 241 RLLDQMKRRGIKPDHISFN---------------PTRLTYNALIQGLCKNQEGDL--AEE 283
           +L++++KR G   D  +                 P   T+  L++  C  +   +  A  
Sbjct: 583 KLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPT 642

Query: 284 LLREMVSKGITPDDNTYFSLIEGI 307
           L + M + G  P+  TY ++I+G+
Sbjct: 643 LFKNMKAMGYKPNVVTYNTVIKGL 666



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 143/312 (45%), Gaps = 31/312 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV  D+ TY + + G C+ G+LE A  + ++M    + P  V+Y  L+DG C+ G 
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    +++ K  +      YN++IH +    K+ +A D+   +  KG+ PD  TYNI
Sbjct: 473 PEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV------LSKQNRMIE------ 168
           +I G C+ G+  +A  L  +M   G  P   TY  LI         +K  ++IE      
Sbjct: 533 MIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592

Query: 169 ----------ADQLFENFLAKGMLPDIVMFNALIDGHCT--NGNIERAFSLLKEMDRMKV 216
                     A       L  G  PD+  F  L+   C   N ++  A +L K M  M  
Sbjct: 593 FSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGY 652

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P+ VTYNT++ G      + +   +LDQM  RG +P+ +       T +  I GLCK  
Sbjct: 653 KPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAV-------TKSTFISGLCKQD 705

Query: 277 EGDLAEELLREM 288
               A  LLR+M
Sbjct: 706 LHGSAILLLRKM 717



 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 24/271 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR V+PD  +Y   + G+C  G  E+A  + E+++++ +      YN +I G CN   
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+     +  +G+ P   TYN++I  L  +  + EAD + ++M E G  P+  TYNI
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNI 567

Query: 121 LINGYCRCGNAKKAFSLHDE----------------------MIHKGIQPTMLTYTSLI- 157
           LI  +   G+A K+  L +E                      M+  G +P + T+T+L+ 
Sbjct: 568 LIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLR 627

Query: 158 -FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
            F L +   + +A  LF+N  A G  P++V +N +I G      I +   +L +M     
Sbjct: 628 PFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGC 687

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            P+ VT +T + G C+Q     A  LL +M+
Sbjct: 688 QPNAVTKSTFISGLCKQDLHGSAILLLRKME 718


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 167/312 (53%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   V+PD   Y + ++ +CK   L +A  +  +M   G+ P  VTY TLI G+C  G+
Sbjct: 188 LEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGH 247

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AFS  +EM  + I P   T+N+LI  L  E KM EA  +L  M +  I PD  TYN 
Sbjct: 248 LKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNS 307

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY      K A  +   M  +G+ P +  YT++I  L K   + EA  LFE    K 
Sbjct: 308 LIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKN 367

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PDIV +N+LIDG C N ++ERA +L K M    + PD  +Y  L+ G C+ G++E+A+
Sbjct: 368 MIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAK 427

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  ++  +G    H++ +     Y  LI  LCK    D A +L  +M  KG  PD  T+
Sbjct: 428 EIFQRLLAKGY---HLNVH----AYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTF 480

Query: 301 FSLIEGIASVDK 312
             +I  +   D+
Sbjct: 481 DIIIRALFEKDE 492



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 7/305 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  P++ T  + + G+C  G +++A    +Q+   G     V+Y TLI+G C  G  + 
Sbjct: 121 RGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKA 180

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 ++    + P    YN +I+ L   + + +A D+  EM  KGI PD +TY  LI+
Sbjct: 181 VARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIH 240

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G+ K+AFSL +EM  K I P + T+  LI  LSK+ +M EA  L    +   + P
Sbjct: 241 GFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKP 300

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+  +N+LIDG+     ++ A  +   M +  V PD   Y  +++G C+   V+EA  L 
Sbjct: 301 DVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLF 360

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++MK + + PD +       TYN+LI GLCKN   + A  L + M  +GI PD  +Y  L
Sbjct: 361 EEMKHKNMIPDIV-------TYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTIL 413

Query: 304 IEGIA 308
           ++G+ 
Sbjct: 414 LDGLC 418



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 28/329 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P ++ + + +S +           + +Q + NG+ P   T + LI+ +C++ ++ +AFS 
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K+G  P A T N LI  L    ++ +A     ++  +G   D ++Y  LING C+
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCK 174

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K    L  ++    ++P ++ Y ++I  L K   + +A  ++   + KG+ PD+V 
Sbjct: 175 TGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 234

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI G C  G+++ AFSLL EM    ++P+  T+N L+    ++GK++EA+ LL  M 
Sbjct: 235 YTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMM 294

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           +  IKPD  ++N                            P    Y  +I GLCK +  D
Sbjct: 295 KACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVD 354

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIA 308
            A  L  EM  K + PD  TY SLI+G+ 
Sbjct: 355 EAMSLFEEMKHKNMIPDIVTYNSLIDGLC 383



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 137/251 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + + P+  T+   +  + KEG+++EA  +L  M +  + P   TYN+LIDGY     
Sbjct: 258 MKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDE 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M ++G+ P    Y  +I+ L   + + EA  + +EM  K ++PD +TYN 
Sbjct: 318 VKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNS 377

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + ++A +L   M  +GIQP + +YT L+  L K  R+ +A ++F+  LAKG
Sbjct: 378 LIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKG 437

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              ++  +  LI+  C  G  + A  L  +M+     PD VT++ ++     + + ++A 
Sbjct: 438 YHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAE 497

Query: 241 RLLDQMKRRGI 251
           ++L +M  RG+
Sbjct: 498 KILREMIARGL 508



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 100/182 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PD   Y + ++G+CK   ++EA  + E+MK   ++P  VTYN+LIDG C   +
Sbjct: 328 MAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHH 387

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +    M +QGI P   +Y +L+  L    ++ +A ++ + +  KG   +   Y +
Sbjct: 388 LERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTV 447

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C+ G   +A  L  +M  KG  P  +T+  +I  L +++   +A+++    +A+G
Sbjct: 448 LINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARG 507

Query: 181 ML 182
           +L
Sbjct: 508 LL 509


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 164/304 (53%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G +P+  TY   + G CK+G+LEEA  +L +M   G     V YN LI   C  G 
Sbjct: 408 MDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGK 467

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM  +G  P   T+N LI  L    +M +A  + ++M  +G++ +S+T+N 
Sbjct: 468 IHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNT 527

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + R G  ++A  L ++M+ +G     +TY  LI  L K   + +   LFE  + KG
Sbjct: 528 LIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKG 587

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P I+  N LI+G CT G +  A   +++M      PD VTYN+L++G C++G+++EA 
Sbjct: 588 LTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEAL 647

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++++  GI+PD I       TYN LI  LC+    D A  LL   V  G  P+D T+
Sbjct: 648 NLFEKLQAEGIQPDSI-------TYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTW 700

Query: 301 FSLI 304
             L+
Sbjct: 701 NILV 704



 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 156/304 (51%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD +T+ + V+G+CK+G    A  ++  M   G  P   TY  LIDG+C KG 
Sbjct: 373 MINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQ 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     EM+ +G       YN LI  L    K+ EA DM  EM  KG  PD  T+N 
Sbjct: 433 LEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNS 492

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G CR    + A +L+ +M+ +G+    +T+ +LI    ++  + EA +L  + L +G
Sbjct: 493 LIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRG 552

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  G +E+   L +EM R  + P  +T N L++G C  GKV  A 
Sbjct: 553 CPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNAL 612

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +  M  RG  PD +       TYN+LI GLCK      A  L  ++ ++GI PD  TY
Sbjct: 613 EFMRDMIHRGFSPDIV-------TYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITY 665

Query: 301 FSLI 304
            +LI
Sbjct: 666 NTLI 669



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 167/312 (53%), Gaps = 8/312 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRML-EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           P+   + + V+G  + GRL EA+  + ++M  NG VP   T++TL++G C KG    A  
Sbjct: 344 PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALE 403

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             ++M  +G  P  +TY +LI     + ++ EA  +L+EM  KG   +++ YN LI+  C
Sbjct: 404 LVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALC 463

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A  +  EM  KG +P + T+ SLIF L + + M +A  L+ + + +G++ + V
Sbjct: 464 KHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSV 523

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN LI      G I+ A  L+ +M       DE+TYN L+   C+ G VE+   L ++M
Sbjct: 524 TFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM 583

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            R+G+ P  I       T N LI G C   +   A E +R+M+ +G +PD  TY SLI G
Sbjct: 584 IRKGLTPSII-------TCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLING 636

Query: 307 IASVDKAAESSN 318
           +    +  E+ N
Sbjct: 637 LCKRGRIQEALN 648



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 165/317 (52%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GV P+ YT+G  +  +C    ++ A  +L  M ++G VP ++ Y TLID    +  
Sbjct: 201 MLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDR 260

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM   G  P  +T+N +I+      +++E   ++  M  KG  P+ +TY  
Sbjct: 261 VDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGY 320

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ-LFENFLAK 179
           L++G C+     +A      ++ K   P ++ + +L+    +  R+ EA   +++  +  
Sbjct: 321 LMHGLCKTCRIDEA----QALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINN 376

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G +PD+  F+ L++G C  G    A  L+ +MD     P+  TY  L+ G C++G++EEA
Sbjct: 377 GYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEA 436

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L +M  +G       F+   + YNALI  LCK+ +   A ++  EM SKG  PD  T
Sbjct: 437 GLILREMLTKG-------FSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFT 489

Query: 300 YFSLIEGIASVDKAAES 316
           + SLI G+  VD+  ++
Sbjct: 490 FNSLIFGLCRVDEMEDA 506



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 147/321 (45%), Gaps = 44/321 (13%)

Query: 31  RMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM---PTASTYNLLI 87
           R+L QMKE G+V     +  ++  Y   G    A     +M  +G+    P+  +YN+++
Sbjct: 125 RLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDM--KGVYCCEPSFRSYNVVL 182

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
             L++      A ++  +M  KG+ P+  T+ +++   C       A  L  +M   G  
Sbjct: 183 DVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCV 242

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P  + Y +LI  LSK++R+ EA +L E     G  PD+  FN +I G C    + R    
Sbjct: 243 PNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFC---RLNRVLEG 299

Query: 208 LKEMDRMKVH---PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----- 259
            K +DRM +    P+++TY  LMHG C+  +++EA+ LL ++      P+ + FN     
Sbjct: 300 AKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP----GPNVVHFNTLVNG 355

Query: 260 ------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
                                   P   T++ L+ GLCK      A EL+ +M +KG  P
Sbjct: 356 FVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKP 415

Query: 296 DDNTYFSLIEGIASVDKAAES 316
           + NTY  LI+G     +  E+
Sbjct: 416 NLNTYTILIDGFCKKGQLEEA 436



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 12/253 (4%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F+    ++G   + S Y LLI +L         D +L +M E+GIV     + +++  Y 
Sbjct: 91  FKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYG 150

Query: 127 RCGNAKKAFSLHDEMIHKGI---QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           R G   +A  L  +M  KG+   +P+  +Y  ++ VL   N    A  +F + L+KG+ P
Sbjct: 151 RAGLPGQATRLLLDM--KGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSP 208

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +   F  ++   C    ++ A  LL++M +    P+ + Y TL+    ++ +V+EA +LL
Sbjct: 209 NDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLL 268

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   G  PD         T+N +I G C+        +L+  M+ KG TP+D TY  L
Sbjct: 269 EEMFLMGCPPDVN-------TFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYL 321

Query: 304 IEGIASVDKAAES 316
           + G+    +  E+
Sbjct: 322 MHGLCKTCRIDEA 334


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 172/312 (55%), Gaps = 7/312 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V  D Y++G  + G C+ G +E++  +L ++ E G  P  V Y TLIDG C KG +E A 
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM K G++    TY +LI+ L       +  +M ++M E G+ P+  TYN ++N  
Sbjct: 219 DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G  K AF + DEM  +G+   ++TY +LI  L ++ ++ EA+++ +   + G+ P++
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N LIDG C  G + +A SL +++    + P  VTYN L+ G CR+G    A +++ +
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M+ RGIK       P+++TY  LI    ++   + A +L   M   G+ PD +TY  LI 
Sbjct: 399 MEERGIK-------PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIH 451

Query: 306 GIASVDKAAESS 317
           G     +  E+S
Sbjct: 452 GFCIKGQMNEAS 463



 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 170/304 (55%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV P+ YTY   ++ +CK+GR ++A ++ ++M+E G+    VTYNTLI G C +  
Sbjct: 259 MQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMK 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D+M   GI P   TYN LI       K+ +A  + +++  +G+ P  +TYNI
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+CR G+   A  +  EM  +GI+P+ +TYT LI   ++ + M +A QL  +    G
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+  ++ LI G C  G +  A  L K M      P+EV YNT++ G C++G    A 
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL +M+ + + P+  S       Y  +I+ LCK ++   AE L+ +M+  GI P   + 
Sbjct: 499 KLLKEMEEKELAPNVAS-------YRYMIEVLCKERKSKEAERLVEKMIDSGIDP-STSI 550

Query: 301 FSLI 304
            SLI
Sbjct: 551 LSLI 554



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  +  TY   ++G+ K G  ++   M E+M+E+G+ P   TYN +++  C  G 
Sbjct: 224 MGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   DEM ++G+     TYN LI  L  E K+ EA+ ++ +M   GI P+ ITYN 
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNT 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G   KA SL  ++  +G+ P+++TY  L+    ++     A ++ +    +G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  LID    + N+E+A  L   M+ + + PD  TY+ L+HG C +G++ EA 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL   M  +  +P+ +        YN +I G CK      A +LL+EM  K + P+  +Y
Sbjct: 464 RLFKSMVEKNCEPNEV-------IYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASY 516

Query: 301 FSLIEGIASVDKAAES 316
             +IE +    K+ E+
Sbjct: 517 RYMIEVLCKERKSKEA 532



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+   Y + + G CK+G +E+A  +  +M + GLV    TY  LI+G    G  +  
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   ++M + G+ P   TYN ++++L  + +  +A  +  EM E+G+  + +TYN LI G
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A  + D+M   GI P ++TY +LI       ++ +A  L  +  ++G+ P 
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N L+ G C  G+   A  ++KEM+   + P +VTY  L+    R   +E+A +L  
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432

Query: 245 QMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            M+  G+ PD H        TY+ LI G C   + + A  L + MV K   P++  Y ++
Sbjct: 433 SMEELGLVPDVH--------TYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484

Query: 304 IEG 306
           I G
Sbjct: 485 ILG 487



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 29/307 (9%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
             +M +NG VP +  +N L+       +    +SF +E  K  ++    ++ +LI     
Sbjct: 117 FNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN-KSKVVLDVYSFGILIKGCCE 175

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
             ++ ++ D+L E+ E G  P+ + Y  LI+G C+ G  +KA  L  EM   G+     T
Sbjct: 176 AGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERT 235

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           YT LI  L K     +  +++E     G+ P++  +N +++  C +G  + AF +  EM 
Sbjct: 236 YTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR 295

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------- 259
              V  + VTYNTL+ G CR+ K+ EA +++DQMK  GI P+ I++N             
Sbjct: 296 ERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLG 355

Query: 260 ---------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                          P+ +TYN L+ G C+  +   A ++++EM  +GI P   TY  LI
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415

Query: 305 EGIASVD 311
           +  A  D
Sbjct: 416 DTFARSD 422



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++P   TY   +    +   +E+A ++   M+E GLVP   TY+ LI G+C KG 
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      MV++   P    YN +I     E     A  +LKEM EK + P+  +Y  
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           +I   C+   +K+A  L ++MI  GI P+    TS++ ++S+
Sbjct: 519 MIEVLCKERKSKEAERLVEKMIDSGIDPS----TSILSLISR 556


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 170/337 (50%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++PDSYTY + ++G CK G ++ A R++     NG VP   TY +LIDG C++G 
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGE 371

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  +E + +GI P    YN LI  L  +  ++EA  +  EM EKG++P+  T+NI
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C+ G    A  L   MI KG  P + T+  LI   S Q +M  A ++ +  L  G
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG 491

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N+L++G C     E      K M      P+  T+N L+   CR  K++EA 
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEAL 551

Query: 241 RLLDQMKRRGIKPDHISF-----------------------------NPTRLTYNALIQG 271
            LL++MK + + PD ++F                             + +  TYN +I  
Sbjct: 552 GLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             +     +AE+L +EMV + + PD  TY  +++G  
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 173/351 (49%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV     T+   +  +CK+G ++E  ++L+++ + G++P   TYN  I G C +G 
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      +++QG  P   TYN LI+ L    K  EA+  L +M  +G+ PDS TYN 
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNT 326

Query: 121 LINGYCR---------------------------------C--GNAKKAFSLHDEMIHKG 145
           LI GYC+                                 C  G   +A +L +E + KG
Sbjct: 327 LIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKG 386

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I+P ++ Y +LI  LS Q  ++EA QL      KG++P++  FN L++G C  G +  A 
Sbjct: 387 IKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD 446

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+K M      PD  T+N L+HG   Q K+E A  +LD M   G+ PD         TY
Sbjct: 447 GLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPD-------VYTY 499

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N+L+ GLCK  + +   E  + MV KG  P+  T+  L+E +    K  E+
Sbjct: 500 NSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEA 550



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 158/305 (51%), Gaps = 7/305 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G +PD  TY + + G+CK  + +EA   L +M   GL P + TYNTLI GYC  G +++
Sbjct: 280 QGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQL 339

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     + V  G +P   TY  LI  L  E +   A  +  E   KGI P+ I YN LI 
Sbjct: 340 AERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIK 399

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G    G   +A  L +EM  KG+ P + T+  L+  L K   + +AD L +  ++KG  P
Sbjct: 400 GLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFP 459

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  FN LI G+ T   +E A  +L  M    V PD  TYN+L++G C+  K E+     
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETY 519

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M  +G  P+         T+N L++ LC+ ++ D A  LL EM +K + PD  T+ +L
Sbjct: 520 KTMVEKGCAPN-------LFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTL 572

Query: 304 IEGIA 308
           I+G  
Sbjct: 573 IDGFC 577



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 159/315 (50%), Gaps = 8/315 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++P+   Y + + G+  +G + EA+++  +M E GL+P   T+N L++G C  G +  
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A      M+ +G  P   T+N+LIH    + KM  A ++L  M + G+ PD  TYN L+N
Sbjct: 445 ADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLN 504

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+    +     +  M+ KG  P + T+  L+  L +  ++ EA  L E    K + P
Sbjct: 505 GLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNP 564

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDR-MKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           D V F  LIDG C NG+++ A++L ++M+   KV     TYN ++H    +  V  A +L
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKL 624

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M  R + PD         TY  ++ G CK    +L  + L EM+  G  P   T   
Sbjct: 625 FQEMVDRCLGPDG-------YTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGR 677

Query: 303 LIEGIASVDKAAESS 317
           +I  +   D+  E++
Sbjct: 678 VINCLCVEDRVYEAA 692



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 164/344 (47%), Gaps = 42/344 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M+ RG+ PD Y++   +   CK  R   A R+L  M   G     V Y T++ G+     
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196

Query: 56  ------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                         C KG+++      D+++K+G++P   TYNL
Sbjct: 197 KAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNL 256

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
            I  L    ++  A  M+  + E+G  PD ITYN LI G C+    ++A     +M+++G
Sbjct: 257 FIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG 316

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P   TY +LI    K   +  A+++  + +  G +PD   + +LIDG C  G   RA 
Sbjct: 317 LEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRAL 376

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +L  E     + P+ + YNTL+ G   QG + EA +L ++M  +G+ P+         T+
Sbjct: 377 ALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPE-------VQTF 429

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           N L+ GLCK      A+ L++ M+SKG  PD  T+  LI G ++
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYST 473



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 138/258 (53%), Gaps = 1/258 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD +T+   + G   + ++E A  +L+ M +NG+ P   TYN+L++G C    
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSK 511

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E        MV++G  P   T+N+L+  L   RK+ EA  +L+EM  K + PD++T+  
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G+C+ G+   A++L  +M     +  +  TY  +I   +++  +  A++LF+  + +
Sbjct: 572 LIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR 631

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + PD   +  ++DG C  GN+   +  L EM      P   T   +++  C + +V EA
Sbjct: 632 CLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEA 691

Query: 240 RRLLDQMKRRGIKPDHIS 257
             ++ +M ++G+ P+ ++
Sbjct: 692 AGIIHRMVQKGLVPEAVN 709



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 151/315 (47%), Gaps = 10/315 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P  ++Y + +S +   G  ++A ++  +M++ G+ P   ++   +  +C       A  
Sbjct: 108 EPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALR 167

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             + M  QG       Y  ++     E    E  ++  +M   G+     T+N L+   C
Sbjct: 168 LLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLC 227

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G+ K+   L D++I +G+ P + TY   I  L ++  +  A ++    + +G  PD++
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVI 287

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N LI G C N   + A   L +M    + PD  TYNTL+ G C+ G V+ A R++   
Sbjct: 288 TYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDA 347

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD       + TY +LI GLC   E + A  L  E + KGI P+   Y +LI+G
Sbjct: 348 VFNGFVPD-------QFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400

Query: 307 IAS---VDKAAESSN 318
           +++   + +AA+ +N
Sbjct: 401 LSNQGMILEAAQLAN 415



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 10/298 (3%)

Query: 14  GSFVSGM---CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           G +V  M    ++G+++EA  + E+M      PT  +YN ++    + G  + A      
Sbjct: 77  GVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMR 136

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M  +GI P   ++ + +       +   A  +L  M  +G   + + Y  ++ G+     
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             + + L  +M+  G+   + T+  L+ VL K+  + E ++L +  + +G+LP++  +N 
Sbjct: 197 KAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNL 256

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
            I G C  G ++ A  ++  +      PD +TYN L++G C+  K +EA   L +M   G
Sbjct: 257 FIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG 316

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           ++PD         TYN LI G CK     LAE ++ + V  G  PD  TY SLI+G+ 
Sbjct: 317 LEPDS-------YTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC 367



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 149/306 (48%), Gaps = 8/306 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGN 60
           K  G +    TY S +  +   G+ E    +L  M+EN G       Y   +  Y  KG 
Sbjct: 32  KEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGK 91

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  + M      PT  +YN ++  L+      +A  +   M ++GI PD  ++ I
Sbjct: 92  VQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +  +C+      A  L + M  +G +  ++ Y +++    ++N   E  +LF   LA G
Sbjct: 152 RMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +  FN L+   C  G+++    LL ++ +  V P+  TYN  + G C++G+++ A 
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAV 271

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R++  +  +G KPD I       TYN LI GLCKN +   AE  L +MV++G+ PD  TY
Sbjct: 272 RMVGCLIEQGPKPDVI-------TYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTY 324

Query: 301 FSLIEG 306
            +LI G
Sbjct: 325 NTLIAG 330


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 164/308 (53%), Gaps = 6/308 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG++PD YTY   V+GMCKEG L+ A   L ++ +NG V    TYN L+    N+G 
Sbjct: 242 MLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGK 301

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       +M+ +G  P   TY+ LI  L  + K+ EA ++LK M EK + PD  +Y+ 
Sbjct: 302 WEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDP 361

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR G    A    D+MI  G  P +L+Y S++  L K     EA  +FE     G
Sbjct: 362 LISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVG 421

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +N L     ++G+  RA  ++ EM    + PDE+TYN+L+   CR G V++A 
Sbjct: 422 CPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAI 481

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M             PT ++YN ++ GLCK Q    A E+L  MV++G  P++ TY
Sbjct: 482 ELLVDMFESE------KCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTY 535

Query: 301 FSLIEGIA 308
             LI+GI 
Sbjct: 536 TLLIQGIG 543



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 162/303 (53%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD + Y + +SG CK  R++ AS++L++MK+ G  P  VTYN LI  +C +G L++A  
Sbjct: 143 KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALR 202

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D+++K    PT  TY +LI   + +  + EA  +L EM  +G+ PD  TYN+++NG C
Sbjct: 203 VMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMC 262

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +AF     +   G    + TY  L+  L  + +    ++L  + L KG  P+ +
Sbjct: 263 KEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPI 322

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LI   C +G I+ A ++LK M    + PD  +Y+ L+   CR+GKV+ A   LD M
Sbjct: 323 TYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDM 382

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD +S       YN+++  LCKN   D A  +  ++   G  P+  +Y +L   
Sbjct: 383 ISGGHLPDILS-------YNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGA 435

Query: 307 IAS 309
           + S
Sbjct: 436 LWS 438



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 156/333 (46%), Gaps = 43/333 (12%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           CK  + +E+   L+ M   G  P  +    LI G+ N   +E A    + + K G  P  
Sbjct: 88  CKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG-KPDV 146

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
             YN +I       ++  A  +L  M ++G  PD +TYNILI  +C  G    A  + D+
Sbjct: 147 FAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQ 206

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           ++    +PT++TYT LI     Q  + EA +L +  L++G+ PD   +N +++G C  G 
Sbjct: 207 LLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGM 266

Query: 201 IERAFSLL--------------------------------KEMDRMKV---HPDEVTYNT 225
           ++RAF  L                                K M  M V    P+ +TY+T
Sbjct: 267 LDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYST 326

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+   CR GK++EA+ +L  MK + + PD  S++P       LI  LC+  + DLA E L
Sbjct: 327 LITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDP-------LISALCREGKVDLAIEFL 379

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            +M+S G  PD  +Y S++  +     A E+ N
Sbjct: 380 DDMISGGHLPDILSYNSILASLCKNGNADEALN 412



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 36/179 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  +Y S ++ +CK G  +EA  + E++ E G  P A +YNTL     + G+
Sbjct: 382 MISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGD 441

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIH------------ELLME--------------- 93
              A     EM+  GI P   TYN LI             ELL++               
Sbjct: 442 KIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYN 501

Query: 94  ---------RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
                    +++++A ++L  M  +G +P+  TY +LI G    G    A  L + +++
Sbjct: 502 TVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELANLLVN 560



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F   ++  C +   + +   L+ M      PD +    L+ G     K+E+A ++++ ++
Sbjct: 80  FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILE 139

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           + G KPD  +       YNA+I G CK    D A ++L  M  +G  PD  TY  LI
Sbjct: 140 KHG-KPDVFA-------YNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILI 188


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 168/303 (55%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD + Y + +SG  K  +LE A+R+L++MK  G +P  VTYN +I  +C++G L++A  
Sbjct: 135 KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALE 194

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +E++K    PT  TY +LI   +++  +  A  +L EM  KG+ PD++TYN +I G C
Sbjct: 195 IFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMC 254

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +     KAF L   +  +G +P ++TY  L+  L  + +  E ++L    ++ G  P++V
Sbjct: 255 KEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVV 314

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
             + LI   C +G +E A +LL+ M    + PD   Y+ L+ G CR+G+++ A   L+ M
Sbjct: 315 THSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYM 374

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD ++       YN ++ GLC+  + D A E+  ++   G  P+ ++Y +L   
Sbjct: 375 ISDGCLPDIVN-------YNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSA 427

Query: 307 IAS 309
           + S
Sbjct: 428 LWS 430



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++PD+ TY + + GMCKE  +++A  +L  +   G  P  +TYN L+    ++G 
Sbjct: 234 MLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGK 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                    EM+  G  P   T+++LI  L  + K+ EA ++L+ M EKG+ PD+  Y+ 
Sbjct: 294 WSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDP 353

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+CR G    A    + MI  G  P ++ Y +++  L +  +  +A ++FE     G
Sbjct: 354 LIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG 413

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  +N L     ++G+  RA  ++ ++    + PDE+TYN+L+   CR G V+EA 
Sbjct: 414 CPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAI 473

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M+    +P+ +S       YN ++ GLCK    + A E+L  M  KG  P++ TY
Sbjct: 474 ELLVDMQSGRYRPNVVS-------YNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTY 526

Query: 301 FSLIEGIASVDKAAES 316
             LIEGI      AE+
Sbjct: 527 ILLIEGIGFSGLRAEA 542



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 171/344 (49%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSRG  PD  TY   +   C  G+L+ A  + E++ ++   PT +TY  LI+     G 
Sbjct: 164 MKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGG 223

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A    DEM+ +G+ P   TYN +I  +  E  + +A ++L+ +  +G  PD ITYNI
Sbjct: 224 IDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNI 283

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+      G   +   L  EMI  G +P ++T++ LI  L +  ++ EA  L  +   KG
Sbjct: 284 LLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKG 343

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   ++ LI G C  G ++ A   L+ M      PD V YNT+M G CR GK ++A 
Sbjct: 344 LKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQAL 403

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            + +++   G  P+  S+N                            P  +TYN+LI  L
Sbjct: 404 EVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCL 463

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C++   D A ELL +M S    P+  +Y  ++ G+  V++A ++
Sbjct: 464 CRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDA 507



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 155/331 (46%), Gaps = 43/331 (12%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G+  E+   LE M + G  P  +    LI G+ N  N+  A    + + + G  P  
Sbjct: 80  CRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG-KPDV 138

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
             YN LI   +   ++  A+ +L  M  +G +PD +TYNI+I  +C  G    A  + +E
Sbjct: 139 FAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEE 198

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           ++    +PT++TYT LI        +  A +L +  L+KG+ PD + +NA+I G C    
Sbjct: 199 LLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMM 258

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLM-----HGR------------------------- 230
           +++AF LL+ +      PD +TYN L+      G+                         
Sbjct: 259 VDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSI 318

Query: 231 -----CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
                CR GKVEEA  LL  MK +G+KPD   ++P       LI G C+    DLA E L
Sbjct: 319 LIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDP-------LIAGFCREGRLDLATEFL 371

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             M+S G  PD   Y +++ G+    KA ++
Sbjct: 372 EYMISDGCLPDIVNYNTIMAGLCRTGKADQA 402



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 126/246 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +P+  T+   +  +C++G++EEA  +L  MKE GL P A  Y+ LI G+C +G 
Sbjct: 304 MISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGR 363

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A  F + M+  G +P    YN ++  L    K  +A ++ +++ E G  P+  +YN 
Sbjct: 364 LDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNT 423

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +     G+  +A  +  +++++GI P  +TY SLI  L +   + EA +L  +  +  
Sbjct: 424 LFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGR 483

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N ++ G C       A  +L  M      P+E TY  L+ G    G   EA 
Sbjct: 484 YRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAM 543

Query: 241 RLLDQM 246
            L + +
Sbjct: 544 ELANSL 549



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 128/268 (47%), Gaps = 8/268 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           L++  C  G    +  F + MV +G  P       LI      R + +A  ++ E+ E+ 
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVM-EILERY 133

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
             PD   YN LI+G+ +    + A  + D M  +G  P ++TY  +I     + ++  A 
Sbjct: 134 GKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLAL 193

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           ++FE  L     P ++ +  LI+    +G I+ A  LL EM    + PD +TYN ++ G 
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGM 253

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C++  V++A  LL  +  RG KPD I       TYN L++ L    +    E+L+ EM+S
Sbjct: 254 CKEMMVDKAFELLRSLSSRGCKPDII-------TYNILLRTLLSRGKWSEGEKLISEMIS 306

Query: 291 KGITPDDNTYFSLIEGIASVDKAAESSN 318
            G  P+  T+  LI  +    K  E+ N
Sbjct: 307 IGCKPNVVTHSILIGTLCRDGKVEEAVN 334


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 173/335 (51%), Gaps = 27/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  P++ TY   + GMC EG +++A  +L  +  +G  P+ V YNT++ G C+   
Sbjct: 68  MRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAER 127

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+++   P  +T+N++I+ L  +  + +A  +L++M + G   + +TYN 
Sbjct: 128 WGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNA 187

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C   N   A  L  +M   G +P ++TY +L+  L    R ++A++L +N    G
Sbjct: 188 IINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNG 247

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD V FN LI   C  G +  A  + K+M      P+ +TY+T++ G  +  K+++A 
Sbjct: 248 CLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQAL 307

Query: 241 RLLDQMKRRGIKPDHI---------------------------SFNPTRLTYNALIQGLC 273
            L ++M  +G  PD I                             +P  + YNA++ GLC
Sbjct: 308 ELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLC 367

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +N + + A +++  MVS G  PDD TY  LIEG+A
Sbjct: 368 RNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLA 402



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 156/307 (50%), Gaps = 7/307 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQP++YTY   +  +C+ G++ +A  +L+ M   G  P  VTYN L++  C       A 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              D M  +G  P   TYN+L+  +  E  + +A ++L+ +   G  P ++ YN ++ G 
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C       A  L  EM+ +   P   T+  +I+ L ++  + +A QL E     G   +I
Sbjct: 123 CSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANI 182

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +NA+I+G C   N++ A  LL +M      PD VTYNTL+ G C   +  +A  L+D 
Sbjct: 183 VTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDN 242

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M + G  PD+++F       N LI  LC+      A E+ ++M  KG TP+  TY ++I 
Sbjct: 243 MTQNGCLPDNVTF-------NTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIIS 295

Query: 306 GIASVDK 312
           G+A   K
Sbjct: 296 GLAKATK 302



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 150/293 (51%), Gaps = 8/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+  T+   +  +C++G L++A ++LE+M ++G     VTYN +I+G C + N
Sbjct: 138 MLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRN 197

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M   G  P   TYN L+  L    + V+A++++  M + G +PD++T+N 
Sbjct: 198 VDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNT 257

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ G    A  +  +M  KG  P  +TY+++I  L+K  ++ +A +LF     KG
Sbjct: 258 LIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 317

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +  L +    +  IE A   ++++    + P  V YN ++ G CR GK E A 
Sbjct: 318 FNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAI 376

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            ++  M   G  PD        LTY  LI+GL      + A ELL ++ S+ +
Sbjct: 377 DIMAYMVSSGCMPDD-------LTYVILIEGLAYEGYLNEARELLIKLCSRDV 422



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 39/226 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G +PD  TY + + G+C   R  +A  +++ M +NG +P  VT+NTLI   C KG 
Sbjct: 208 MKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGL 267

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD------ 114
           +  A     +M  +G  P + TY+ +I  L    K+ +A ++  EMG KG  PD      
Sbjct: 268 MVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLL 327

Query: 115 ----------------------------SITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
                                       ++ YN ++ G CR G  + A  +   M+  G 
Sbjct: 328 AECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGC 387

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            P  LTY  LI  L+ +  + EA +L     ++      V+ N+LI
Sbjct: 388 MPDDLTYVILIEGLAYEGYLNEARELLIKLCSRD-----VLVNSLI 428



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 28/131 (21%)

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------- 259
           M V P+  TYN L+H  C +G+V +A  +LD M  RG  PD +++N              
Sbjct: 1   MPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQ 60

Query: 260 --------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                         P  +TYN L+ G+C   + D A ELLR + S G  P    Y ++++
Sbjct: 61  AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 120

Query: 306 GIASVDKAAES 316
           G+ S ++  ++
Sbjct: 121 GLCSAERWGDA 131


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 172/309 (55%), Gaps = 9/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  PD  TY   V+G+C+EGR+++A   L+ +   G  P  V+YN ++ G C    
Sbjct: 18  MRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER 77

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYN 119
            E A     EM ++G  P   T+N+LI   L  + +VE A ++L+++ + G  P+S++YN
Sbjct: 78  WEDAEELMGEMGQKGCPPNVVTFNMLIS-FLCRKGLVEPALEVLEQIPKYGCTPNSLSYN 136

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++ +C+     KA +  D M+ +G  P +++Y +L+  L +   +  A +L      K
Sbjct: 137 PLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDK 196

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P ++ +N +IDG    G  + A  LL EM    + PD +TY+T+  G CR+ ++E+A
Sbjct: 197 GCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDA 256

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            R   +++  GI+P+ +        YNA+I GLCK +E   A +L   M+  G  P+++T
Sbjct: 257 IRAFGKVQDMGIRPNTV-------LYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 309

Query: 300 YFSLIEGIA 308
           Y  LIEG+A
Sbjct: 310 YTILIEGLA 318



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 143/251 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  T+   +S +C++G +E A  +LEQ+ + G  P +++YN L+  +C +  
Sbjct: 88  MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 147

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +F D MV +G  P   +YN L+  L    ++  A ++L ++ +KG  P  I+YN 
Sbjct: 148 MDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 207

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  K+A  L +EM+ KG+QP ++TY+++   L +++R+ +A + F      G
Sbjct: 208 VIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMG 267

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++NA+I G C       A  L   M      P+E TY  L+ G   +G ++EAR
Sbjct: 268 IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEAR 327

Query: 241 RLLDQMKRRGI 251
            LLD++  RG+
Sbjct: 328 DLLDELCSRGV 338



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 136/261 (52%), Gaps = 7/261 (2%)

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           C +   + A    DEM  +G  P   TYN++++ +  E ++ +A + LK +   G  P++
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           ++YNI++ G C     + A  L  EM  KG  P ++T+  LI  L ++  +  A ++ E 
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
               G  P+ + +N L+   C    +++A + L  M     +PD V+YNTL+   CR G+
Sbjct: 123 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGE 182

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           V+ A  LL Q+K +G  P  IS       YN +I GL K  +   A ELL EMVSKG+ P
Sbjct: 183 VDVAVELLHQLKDKGCAPVLIS-------YNTVIDGLTKAGKTKEALELLNEMVSKGLQP 235

Query: 296 DDNTYFSLIEGIASVDKAAES 316
           D  TY ++  G+   D+  ++
Sbjct: 236 DIITYSTIAAGLCREDRIEDA 256



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 96/182 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  +Y + ++ +C+ G ++ A  +L Q+K+ G  P  ++YNT+IDG    G 
Sbjct: 158 MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGK 217

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EMV +G+ P   TY+ +   L  E ++ +A     ++ + GI P+++ YN 
Sbjct: 218 TKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNA 277

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C+      A  L   MI  G  P   TYT LI  L+ +  + EA  L +   ++G
Sbjct: 278 IILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337

Query: 181 ML 182
           ++
Sbjct: 338 VV 339



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 66/116 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+QPD  TY +  +G+C+E R+E+A R   ++++ G+ P  V YN +I G C +  
Sbjct: 228 MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 287

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
              A      M+  G MP  STY +LI  L  E  + EA D+L E+  +G+V  S+
Sbjct: 288 THSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSL 343


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 164/301 (54%), Gaps = 7/301 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+ + + SF+S +C +G + +A+++ + M E GL+P   +Y T++ GYC   ++  A 
Sbjct: 319 LSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNAL 378

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            +  +M+K+GI P+ +TY LLI        M  A+ + + M  +G+VPD ++YN L+NGY
Sbjct: 379 KYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGY 438

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + G+ +KAF L   M   G+ P ++TY  LI  L K+  + EA  + +    +G  PD+
Sbjct: 439 GKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDV 498

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V F  +I G    GN E AF L   M    + PD VT + L++G CR   + EA  L  +
Sbjct: 499 VTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHK 558

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M   G+K D I        YN+LI G C     D A  L+  M+  GI P++ T+ +L+ 
Sbjct: 559 MLDAGLKADVI-------LYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVL 611

Query: 306 G 306
           G
Sbjct: 612 G 612



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 177/370 (47%), Gaps = 60/370 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+G+  ++     F+SG C +G ++   ++L +MK  G+ P  V Y  +ID  C    
Sbjct: 212 MKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSL 271

Query: 61  LEMAFSFRDEMVKQGIM--------------------------------PTASTYNLLIH 88
           L+ A S   +M + G+                                 P    +N  I 
Sbjct: 272 LKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFIS 331

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
           +L  +  M++A  + ++M E G++PD  +Y  ++ GYC+  +   A     +M+ +GI+P
Sbjct: 332 KLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRP 391

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           ++ TYT LI    K   M  A+ LF+  + +G++PD+V +N L++G+   G++++AF LL
Sbjct: 392 SVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELL 451

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------- 259
             M    V PD VTYN L+HG  ++G V EA+ +LD++ RRG  PD ++F          
Sbjct: 452 SMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNK 511

Query: 260 -------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                              P  +T +AL+ G C+ +    A  L  +M+  G+  D   Y
Sbjct: 512 GNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILY 571

Query: 301 FSLIEGIASV 310
            SLI G  S+
Sbjct: 572 NSLIHGFCSL 581



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 144/258 (55%), Gaps = 4/258 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++P   TY   +   CK G +E A  + ++M   GLVP  V+YNTL++GY  KG+
Sbjct: 384 MLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGH 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF     M   G+ P   TYN+LIH L+    + EA D+L E+  +G  PD +T+  
Sbjct: 444 LQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTN 503

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+   GN ++AF L   M    ++P ++T ++L+    +   M EA+ LF   L  G
Sbjct: 504 IIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAG 563

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG---RCRQGKVE 237
           +  D++++N+LI G C+ GNI+ A  L+  M    + P+ +T++ L+ G   +C +  VE
Sbjct: 564 LKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGYEKKCVENPVE 623

Query: 238 EARRLLDQ-MKRRGIKPD 254
            A   L Q + + GI+ +
Sbjct: 624 RAAFKLQQLLLKYGIQAE 641



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 143/265 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD ++Y + ++G CK   +  A + L +M + G+ P+  TY  LID  C  GN
Sbjct: 349 MCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGN 408

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +EMA      M+ +G++P   +YN L++    +  + +A ++L  M   G+ PD +TYNI
Sbjct: 409 MEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNI 468

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G   +A  + DE+  +G  P ++T+T++I   S +    EA  LF       
Sbjct: 469 LIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHH 528

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V  +AL++G+C    +  A  L  +M    +  D + YN+L+HG C  G +++A 
Sbjct: 529 LEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDAC 588

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTY 265
            L+  M   GI P++I+ +   L Y
Sbjct: 589 HLVSMMIEHGIMPNNITHHALVLGY 613



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 147/295 (49%), Gaps = 10/295 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            YG  V+   KE   + A +++ +M+   + P     N+L+        L +A+ F  EM
Sbjct: 153 VYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEM 212

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             QG+   AS  +L I     +  +     +L EM   GI PD + Y I+I+  C+    
Sbjct: 213 KSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLL 272

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           K+A S+  +M   G+    ++ +S++    K  +  EA  + E F    + P+I +FN+ 
Sbjct: 273 KEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVF---NLSPNIFVFNSF 329

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I   CT+GN+ +A  + ++M  M + PD  +Y T+M G C+   +  A + L +M +RGI
Sbjct: 330 ISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGI 389

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +       P+  TY  LI   CK    ++AE L + M+++G+ PD  +Y +L+ G
Sbjct: 390 R-------PSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNG 437


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 164/302 (54%), Gaps = 8/302 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+ +TYGS + G+CK G+L++A  +L++M++ G+ P    +N +I G C  G    A  +
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGY 87

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILINGYC 126
              +      P   T+N+L+  L+   ++ EA  + + M      +P+ +TY  +ING C
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A  L D M   G  P ++TY+ L+  L K  R  +   L +    +G  PD++
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI 207

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           M+N L++G C +  ++ A  L++ M R   +P  VTYN+LM   CR  +V+ A RL+  M
Sbjct: 208 MYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVM 267

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             RG  PD I+       YN +I GLC++   D A+ LL++MV+    PD  TY ++I+G
Sbjct: 268 SERGCPPDVIN-------YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDG 320

Query: 307 IA 308
           + 
Sbjct: 321 LC 322



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 165/323 (51%), Gaps = 14/323 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ P    +   + G+CK GR  +A    + +      P  +T+N L+D     G 
Sbjct: 56  MRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 61  LEMAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +E AF   + M      +P   TY  +I+ L  + K+  A ++L  M E G  P+ ITY+
Sbjct: 116 VEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +L+ G C+ G   K F+L  EM  +G QP ++ Y +L+  L K  R+ EA +L +  +  
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRS 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P +V +N+L++  C +  ++RAF L++ M      PD + YNT++ G CR  ++++A
Sbjct: 236 GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD------LAEELLREMVSKGI 293
           + LL QM      PD I       TY+ +I GLCK+   D       A E+L  M   G 
Sbjct: 296 QALLKQMVAARCVPDVI-------TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 294 TPDDNTYFSLIEGIASVDKAAES 316
            P+  TY  +IEG+    K+ ++
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQA 371



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 15/306 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKGNLEMAFS 66
           PD  T+   V  + K GR+EEA ++ E M  +   +P  VTY T+I+G C  G L+ A  
Sbjct: 98  PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIE 157

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D M + G  P   TY++L+  L    +  +   +L+EM  +G  PD I YN L+NG C
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +     +A  L   MI  G  PT++TY SL+ +  +  ++  A +L +    +G  PD++
Sbjct: 218 KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVI 277

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV------EEAR 240
            +N +I G C +  ++ A +LLK+M   +  PD +TY+T++ G C+  +V      E A 
Sbjct: 278 NYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAAC 337

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L+ MK+ G  P+         TY  +I+GLC+ ++   A  LLR M+   + PD ++ 
Sbjct: 338 EILEMMKQTGCPPNA-------GTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSS- 389

Query: 301 FSLIEG 306
           FS++ G
Sbjct: 390 FSMVIG 395



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 165/315 (52%), Gaps = 16/315 (5%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  TY + ++G+CK+G+L+ A  +L+ M E G  P  +TY+ L++G C  G  +  F+ 
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTL 193

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM ++G  P    YN L++ L   R++ EA ++++ M   G  P  +TYN L+  +CR
Sbjct: 194 LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                +AF L   M  +G  P ++ Y ++I  L +  R+ +A  L +  +A   +PD++ 
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313

Query: 188 FNALIDGHC------TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           ++ +IDG C       +  +E A  +L+ M +    P+  TY  ++ G CR  K ++A  
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL +M    + PD  SF       + +I  LCK+ + D A ++   M  +   P+   Y 
Sbjct: 374 LLRRMIDSEVVPDLSSF-------SMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYA 426

Query: 302 SLIEGIAS---VDKA 313
           +LI+G++    VDKA
Sbjct: 427 ALIDGLSKGGEVDKA 441



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 161/350 (46%), Gaps = 35/350 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY   V G+CK GR ++   +L++M   G  P  + YNTL++G C    
Sbjct: 162 MNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR 221

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M++ G  PT  TYN L+      +++  A  +++ M E+G  PD I YN 
Sbjct: 222 LDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNT 281

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD-------QLF 173
           +I G CR      A +L  +M+     P ++TY+++I  L K  R ++AD       ++ 
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWR-VDADWKLEAACEIL 340

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           E     G  P+   +  +I+G C     ++A +LL+ M   +V PD  +++ ++   C+ 
Sbjct: 341 EMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400

Query: 234 GKVEEARRLLDQMKRRGIKPDHI---------------------------SFNPTRLTYN 266
             ++ A ++   M  R  KP+ +                           SF P   TYN
Sbjct: 401 HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYN 460

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +++ GLC     + A  ++  M+ K   PD  +Y +LI G+  V    E+
Sbjct: 461 SVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEA 510



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 14/298 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG- 59
           M  RG  PD   Y + ++G+C++ RL++A  +L+QM     VP  +TY+T+IDG C    
Sbjct: 267 MSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWR 326

Query: 60  -----NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
                 LE A    + M + G  P A TY ++I  L   RK  +A  +L+ M +  +VPD
Sbjct: 327 VDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPD 386

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             +++++I   C+  +   A+ +   M  +  +P  + Y +LI  LSK   + +A ++FE
Sbjct: 387 LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +   P +  +N+++DG C  G IE A  +++ M   +  PD  +Y  L+ G CR  
Sbjct: 447 -LMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVS 505

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            VEEA  L   ++ +G       F      YN L+  LCK +    A  +  +++  G
Sbjct: 506 CVEEAYELFQAVEAKG-------FAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 162/345 (46%), Gaps = 49/345 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QPD   Y + ++G+CK  RL+EA  +++ M  +G  PT VTYN+L++ +C    
Sbjct: 197 MTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQ 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN- 119
           ++ AF     M ++G  P    YN +I  L  + ++ +A  +LK+M     VPD ITY+ 
Sbjct: 257 VDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYST 316

Query: 120 ----------------------------------------ILINGYCRCGNAKKAFSLHD 139
                                                   ++I G CR   +++A +L  
Sbjct: 317 IIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLR 376

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
            MI   + P + +++ +I  L K + +  A ++F     +   P+ V + ALIDG    G
Sbjct: 377 RMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGG 436

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            +++A  + + M      P   TYN+++ G C  G++EEA R+++ M  +   PD  S  
Sbjct: 437 EVDKAVRVFELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGAS-- 493

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                Y ALI+GLC+    + A EL + + +KG   +   Y  L+
Sbjct: 494 -----YGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLV 533



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 8/210 (3%)

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
           E+  VP+  TY  LI+G C+ G   +A+ L DEM  +GI P +  +  +I  L K  R  
Sbjct: 23  EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFG 82

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTL 226
           +A   F+        PDI+ FN L+D    +G +E AF + + M    +  P+ VTY T+
Sbjct: 83  DALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTV 142

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           ++G C+ GK++ A  LLD M   G  P+ I       TY+ L++GLCK    D    LL+
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVI-------TYSVLVEGLCKAGRTDKGFTLLQ 195

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           EM  +G  PD   Y +L+ G+    +  E+
Sbjct: 196 EMTRRGFQPDVIMYNTLLNGLCKSRRLDEA 225


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 164/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D  TY + + G C EG++E   R+ E+M + G+ P   TYN L+ G CN G 
Sbjct: 514 MLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGK 573

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    DE    G++    TY +++       ++ + +++  E+  K +  +SI YNI
Sbjct: 574 LDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNI 633

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C+ GN   A  L + M  KGI P   TY+SLI  +     + +A  L +    +G
Sbjct: 634 IIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEG 693

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++V + ALI G+C  G ++ A S   EM    +HP++ TY  ++ G C+ G +E+A 
Sbjct: 694 FVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKAN 753

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +MK  GI PD +       TYN L  G CK  + D A ++  +M ++G+  D+ TY
Sbjct: 754 NLLIKMKESGIVPDVV-------TYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITY 806

Query: 301 FSLIEG 306
            +L+ G
Sbjct: 807 TTLVHG 812



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 164/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR  +P        V G+CK+G+  EA+ +  ++ E G   + VT N LI G C  G 
Sbjct: 444 MLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGK 503

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+++G+     TYN LI     E K+     + +EM ++GI PD  TYN 
Sbjct: 504 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 563

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  L DE    G+   + TY  ++    K NR+ + + LF   L+K 
Sbjct: 564 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 623

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  + +++N +I  HC NGN+  A  LL+ M    + P+  TY++L+HG C  G VE+A+
Sbjct: 624 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 683

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D+M++ G       F P  + Y ALI G CK  + D AE    EM+S  I P+  TY
Sbjct: 684 HLIDEMRKEG-------FVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTY 736

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+G   +    +++N
Sbjct: 737 TVMIDGYCKLGNMEKANN 754



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 166/345 (48%), Gaps = 42/345 (12%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G  PD +++ + ++ +CK G++E A  +  +M++ G+ P  VTYN +I+G C  G L+
Sbjct: 236 SEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLD 295

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF  +++M  +G+ P   TY  LI+ L+      + + +L EM   G  P+ + +N LI
Sbjct: 296 NAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLI 355

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM- 181
           +GYC+ GN + A  + D MI K I PT +T  SL+    K +++  A+   E  L+ G+ 
Sbjct: 356 DGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLS 415

Query: 182 ----------------------------------LPDIVMFNALIDGHCTNGNIERAFSL 207
                                              P  ++   L+ G C +G    A  L
Sbjct: 416 IHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATEL 475

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
              +        +VT N L+HG C  GK+ EA R++ +M  RG+  D       R+TYNA
Sbjct: 476 WFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMD-------RITYNA 528

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           LI G C   + +    L  EM  +GI PD  TY  L+ G+ +V K
Sbjct: 529 LILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGK 573



 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 170/320 (53%), Gaps = 11/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GVQP+  TYG+ ++G+ K    ++ + +L++M  +G  P  V +N LIDGYC  GN
Sbjct: 304 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGN 363

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITY 118
           +E A   +D M+ + I PT+ T   L+       ++  A++ L+E+   G  I PD+  Y
Sbjct: 364 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDN-CY 422

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           ++ ++  C+      AF     M+ +  +P+ L  T L+  L K  + +EA +L+   L 
Sbjct: 423 SV-VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLE 481

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG     V  NALI G C  G +  A  ++KEM    +  D +TYN L+ G C +GKVE 
Sbjct: 482 KGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEG 541

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
             RL ++M +RGI+PD         TYN L++GLC   + D A +L  E  + G+  + +
Sbjct: 542 CFRLREEMTKRGIQPD-------IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIH 594

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY  ++EG    ++  +  N
Sbjct: 595 TYGIMMEGYCKANRIEDVEN 614



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 31/311 (9%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFS-FRDEMVKQGIMPTASTYNLLIHELLMER 94
           +   G  P+  T N L+         E     FR  ++ +G  P   ++  +I+ L    
Sbjct: 200 LARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFR--VMSEGACPDVFSFTNVINALCKGG 257

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           KM  A ++  +M + GI P+ +TYN +ING C+ G    AF L ++M  KG+QP + TY 
Sbjct: 258 KMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYG 317

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           +LI  L K N   + + + +  +  G  P++V+FN LIDG+C  GNIE A  +   M   
Sbjct: 318 ALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISK 377

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG--IKPDHI---------------- 256
            + P  VT  +LM G C+  ++E A   L+++   G  I PD+                 
Sbjct: 378 NITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSA 437

Query: 257 ----------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                     +F P+ L    L+ GLCK+ +   A EL   ++ KG      T  +LI G
Sbjct: 438 FRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHG 497

Query: 307 IASVDKAAESS 317
           +    K  E+S
Sbjct: 498 LCGAGKLPEAS 508



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 129/267 (48%), Gaps = 15/267 (5%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE---ADDMLKEMGEKGIVPD 114
           K ++E+A +        G       ++LLIH    + + +    A D+   +  KG  P 
Sbjct: 149 KFHIEIANALFGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLARKGTFPS 208

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             T N L++   +    +K   +   M  +G  P + ++T++I  L K  +M  A +LF 
Sbjct: 209 LKTCNFLLSSLVKANEFEKCCEVFRVM-SEGACPDVFSFTNVINALCKGGKMENAIELFM 267

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
                G+ P++V +N +I+G C NG ++ AF L ++M    V P+  TY  L++G  +  
Sbjct: 268 KMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLN 327

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK--NQEGDLAEELLREMVSKG 292
             ++   +LD+M   G       FNP  + +N LI G CK  N EG L  ++   M+SK 
Sbjct: 328 FFDKVNHVLDEMIGSG-------FNPNVVVFNNLIDGYCKMGNIEGAL--KIKDVMISKN 378

Query: 293 ITPDDNTYFSLIEGIASVDKAAESSNS 319
           ITP   T +SL++G    D+   + N+
Sbjct: 379 ITPTSVTLYSLMQGFCKSDQIEHAENA 405



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 35/160 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV-------------- 46
           MKS+G+ P+  TY S + G+C  G +E+A  ++++M++ G VP  V              
Sbjct: 654 MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQ 713

Query: 47  ---------------------TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                TY  +IDGYC  GN+E A +   +M + GI+P   TYN+
Sbjct: 714 MDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 773

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           L +       M  A  +  +M  +G+  D ITY  L++G+
Sbjct: 774 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 813


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 164/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D  TY + + G C EG++E   R+ E+M + G+ P   TYN L+ G CN G 
Sbjct: 491 MLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGK 550

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    DE    G++    TY +++       ++ + +++  E+  K +  +SI YNI
Sbjct: 551 LDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNI 610

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C+ GN   A  L + M  KGI P   TY+SLI  +     + +A  L +    +G
Sbjct: 611 IIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEG 670

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++V + ALI G+C  G ++ A S   EM    +HP++ TY  ++ G C+ G +E+A 
Sbjct: 671 FVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKAN 730

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +MK  GI PD +       TYN L  G CK  + D A ++  +M ++G+  D+ TY
Sbjct: 731 NLLIKMKESGIVPDVV-------TYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITY 783

Query: 301 FSLIEG 306
            +L+ G
Sbjct: 784 TTLVHG 789



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 164/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR  +P        V G+CK+G+  EA+ +  ++ E G   + VT N LI G C  G 
Sbjct: 421 MLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGK 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+++G+     TYN LI     E K+     + +EM ++GI PD  TYN 
Sbjct: 481 LPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNF 540

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  L DE    G+   + TY  ++    K NR+ + + LF   L+K 
Sbjct: 541 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 600

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  + +++N +I  HC NGN+  A  LL+ M    + P+  TY++L+HG C  G VE+A+
Sbjct: 601 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 660

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D+M++ G       F P  + Y ALI G CK  + D AE    EM+S  I P+  TY
Sbjct: 661 HLIDEMRKEG-------FVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTY 713

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+G   +    +++N
Sbjct: 714 TVMIDGYCKLGNMEKANN 731



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 166/345 (48%), Gaps = 42/345 (12%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G  PD +++ + ++ +CK G++E A  +  +M++ G+ P  VTYN +I+G C  G L+
Sbjct: 213 SEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLD 272

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF  +++M  +G+ P   TY  LI+ L+      + + +L EM   G  P+ + +N LI
Sbjct: 273 NAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLI 332

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM- 181
           +GYC+ GN + A  + D MI K I PT +T  SL+    K +++  A+   E  L+ G+ 
Sbjct: 333 DGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLS 392

Query: 182 ----------------------------------LPDIVMFNALIDGHCTNGNIERAFSL 207
                                              P  ++   L+ G C +G    A  L
Sbjct: 393 IHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATEL 452

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
              +        +VT N L+HG C  GK+ EA R++ +M  RG+  D       R+TYNA
Sbjct: 453 WFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMD-------RITYNA 505

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           LI G C   + +    L  EM  +GI PD  TY  L+ G+ +V K
Sbjct: 506 LILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGK 550



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 169/320 (52%), Gaps = 11/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GVQP+  TYG+ ++G+ K    ++ + +L++M   G  P  V +N LIDGYC  GN
Sbjct: 281 MTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGN 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITY 118
           +E A   +D M+ + I PT+ T   L+       ++  A++ L+E+   G  I PD+  Y
Sbjct: 341 IEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDN-CY 399

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           ++ ++  C+      AF     M+ +  +P+ L  T L+  L K  + +EA +L+   L 
Sbjct: 400 SV-VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLE 458

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG     V  NALI G C  G +  A  ++KEM    +  D +TYN L+ G C +GKVE 
Sbjct: 459 KGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEG 518

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
             RL ++M +RGI+PD         TYN L++GLC   + D A +L  E  + G+  + +
Sbjct: 519 CFRLREEMTKRGIQPD-------IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIH 571

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY  ++EG    ++  +  N
Sbjct: 572 TYGIMMEGYCKANRIEDVEN 591



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 143/311 (45%), Gaps = 31/311 (9%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFS-FRDEMVKQGIMPTASTYNLLIHELLMER 94
           +   G  P+  T N  +         E     FR  ++ +G  P   ++  +I+ L    
Sbjct: 177 LARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFR--VMSEGACPDVFSFTNVINALCKGG 234

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           KM  A ++  +M + GI P+ +TYN +ING C+ G    AF L ++M  KG+QP + TY 
Sbjct: 235 KMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYG 294

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           +LI  L K N   + + + +  +  G  P++V+FN LIDG+C  GNIE A  +   M   
Sbjct: 295 ALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISK 354

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG--IKPDHI---------------- 256
            + P  VT  +LM G C+  ++E A   L+++   G  I PD+                 
Sbjct: 355 NITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSA 414

Query: 257 ----------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                     +F P+ L    L+ GLCK+ +   A EL   ++ KG      T  +LI G
Sbjct: 415 FRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHG 474

Query: 307 IASVDKAAESS 317
           +    K  E+S
Sbjct: 475 LCGAGKLPEAS 485



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 15/267 (5%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE---ADDMLKEMGEKGIVPD 114
           K ++E+A +        G       ++LLIH    + + +    A D+   +  KG  P 
Sbjct: 126 KFHIEIANALFGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLARKGTFPS 185

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             T N  ++   +    +K   +   M  +G  P + ++T++I  L K  +M  A +LF 
Sbjct: 186 LKTCNFXLSSLVKANEFEKCCEVFRVM-SEGACPDVFSFTNVINALCKGGKMENAIELFM 244

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
                G+ P++V +N +I+G C NG ++ AF L ++M    V P+  TY  L++G  +  
Sbjct: 245 KMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLN 304

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK--NQEGDLAEELLREMVSKG 292
             ++   +LD+M   G       FNP  + +N LI G CK  N EG L  ++   M+SK 
Sbjct: 305 FFDKVNHILDEMIGAG-------FNPNVVVFNNLIDGYCKMGNIEGAL--KIKDVMISKN 355

Query: 293 ITPDDNTYFSLIEGIASVDKAAESSNS 319
           ITP   T +SL++G    D+   + N+
Sbjct: 356 ITPTSVTLYSLMQGFCKSDQIEHAENA 382



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 35/160 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV-------------- 46
           MKS+G+ P+  TY S + G+C  G +E+A  ++++M++ G VP  V              
Sbjct: 631 MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQ 690

Query: 47  ---------------------TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                TY  +IDGYC  GN+E A +   +M + GI+P   TYN+
Sbjct: 691 MDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 750

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           L +       M  A  +  +M  +G+  D ITY  L++G+
Sbjct: 751 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 790


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 167/298 (56%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV P+ +TY   ++ +CK+GR ++A ++ ++M+E G+    VTYNTLI G C +  
Sbjct: 259 MQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMK 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D+M   GI P   TYN LI      RK+ +A  + +++  +G+ P  +TYNI
Sbjct: 319 ANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G+   A  +  EM  +GI+P+ +TYT LI   ++ + M +A QL  +    G
Sbjct: 379 LVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  ++ LI G C  G +  A  L K M   K  P+EV YNT++ G C++G    A 
Sbjct: 439 LTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRAL 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           RL  +M+ + + P+  S       Y  +I+ LCK ++   AE L+ +M+  GI P D+
Sbjct: 499 RLFREMEEKELPPNVAS-------YRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDS 549



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 171/309 (55%), Gaps = 7/309 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D Y++G  + G C+ G +E++  +L +++E G  P  V Y TLIDG C KG +E A    
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM K G++    TY +LIH L       +  +M ++M E G+ P+  TYN ++N  C+ 
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKD 281

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  K AF + DEM  +G+   ++TY +LI  L ++ +  EA+++ +   + G+ P+++ +
Sbjct: 282 GRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITY 341

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LIDG C    + +A SL +++    + P  VTYN L+ G C++G    A +++ +M+ 
Sbjct: 342 NTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEE 401

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           RGIK       P+++TY  LI    ++   + A +L   M   G+TPD +TY  LI G  
Sbjct: 402 RGIK-------PSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFC 454

Query: 309 SVDKAAESS 317
              +  E+S
Sbjct: 455 IKGRMNEAS 463



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  + +TY   + G+ K G  ++   M E+M+E+G+ P   TYN +++  C  G 
Sbjct: 224 MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGR 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   DEM ++G+     TYN LI  L  E K  EA++++ +M   GI P+ ITYN 
Sbjct: 284 TKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNT 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C      KA SL  ++  +G+ P+++TY  L+    K+     A ++ +    +G
Sbjct: 344 LIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  LID    + N+E+A  L   M+ + + PD  TY+ L+HG C +G++ EA 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEAS 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL   M  +        F P  + YN ++ G CK      A  L REM  K + P+  +Y
Sbjct: 464 RLFKSMVEK-------KFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASY 516

Query: 301 FSLIEGIASVDKAAES 316
             +IE +    K+ E+
Sbjct: 517 RYMIEVLCKERKSKEA 532



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 108/191 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSRG+ P   TY   VSG CK+G    A +++++M+E G+ P+ VTY  LID +    N
Sbjct: 364 LKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDN 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   R  M + G+ P   TY++LIH   ++ +M EA  + K M EK   P+ + YN 
Sbjct: 424 MEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNT 483

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ GYC+ G++ +A  L  EM  K + P + +Y  +I VL K+ +  EA+ L E  +  G
Sbjct: 484 MVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSG 543

Query: 181 MLPDIVMFNAL 191
           + P   + N +
Sbjct: 544 IGPSDSILNLI 554



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 140/269 (52%), Gaps = 8/269 (2%)

Query: 48  YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
           Y  +I+ Y    +L+ +  + +EMV +G +P ++ +N L+  ++      +      E  
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
            K +V D  ++ I+I G C  G  +K+F L  E+   G  P ++ YT+LI    K+  + 
Sbjct: 157 IK-VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIE 215

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           +A  LF      G++ +   +  LI G   NG  ++ F + ++M    V P+  TYN +M
Sbjct: 216 KAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVM 275

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           +  C+ G+ ++A ++ D+M+ RG+  + +       TYN LI GLC+  + + A E++ +
Sbjct: 276 NQLCKDGRTKDAFKVFDEMRERGVSCNIV-------TYNTLIGGLCREMKANEANEVMDQ 328

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAES 316
           M S GI P+  TY +LI+G   V K  ++
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVRKLGKA 357



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 113/230 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G+ P+  TY + + G C   +L +A  +   +K  GL P+ VTYN L+ G+C KG+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM ++GI P+  TY +LI        M +A  +   M E G+ PD  TY++
Sbjct: 389 TSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSV 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G   +A  L   M+ K  +P  + Y +++    K+     A +LF     K 
Sbjct: 449 LIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKE 508

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           + P++  +  +I+  C     + A  L+++M    + P +   N +   +
Sbjct: 509 LPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISRAK 558


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  RG  PD++T+   + G+CKEG++ EA ++LE M+  G  P  +TYNTL++G C  G 
Sbjct: 1181 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQ 1240

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            LE A    + +  +GI     +YN+LI+    ++K+ EA    +EM  KG+ P ++TYN 
Sbjct: 1241 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNT 1300

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI   C+ G  + A  L  EM   G    + TY  L+  L K   + EA  LF++     
Sbjct: 1301 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE 1360

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              P+I +F+ L+DG C  G +E A+    E+ +  + PD + YN L++G C +G + EA 
Sbjct: 1361 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAV 1420

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LL QM+ +G  PD I       T+N +IQ L K  E   A +LL EM ++  +PD+   
Sbjct: 1421 KLLWQMEEKGCLPDSI-------TFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVT 1473

Query: 301  FSLIEGIASVDKAAESS 317
             S++  +AS D    ++
Sbjct: 1474 -SMLLCLASFDPQWHAA 1489



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+ RG+  D YTY S + G+ + G  +E +  L  M + G  P A T+  LIDG C +G 
Sbjct: 1146 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 1205

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A    + M  +G  P   TYN L++ L +  ++ +A  + + + ++GI  +  +YNI
Sbjct: 1206 VGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNI 1265

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LINGYC+     +AF   +EM  KG++P+ +TY +LI  L +  R+  A +LF      G
Sbjct: 1266 LINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 1325

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                +  +  L+DG C NG++E A  L + + + +  P+   ++ L+ G CR GK+EEA 
Sbjct: 1326 QFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAW 1385

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  D++ + G++PD I+       YN LI GLC       A +LL +M  KG  PD  T+
Sbjct: 1386 KQFDEISKNGLEPDTIA-------YNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITF 1438

Query: 301  FSLIEGIASVDKAAES 316
              +I+ +   ++  E+
Sbjct: 1439 NVIIQNLLKENEIHEA 1454



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 153/301 (50%), Gaps = 8/301 (2%)

Query: 4    RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
            RG +PD+ T  + V G+  E  + +A ++ ++M + GL+  A TY  LI+G C      +
Sbjct: 1010 RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGL 1069

Query: 64   AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
            A    ++M K        TY ++I  L  +    EA DM  EM   GI+PD + Y+ L++
Sbjct: 1070 AIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMD 1128

Query: 124  GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            G CR G  K+A     EM  +GI   + TY SLI  LS+     E        + +G  P
Sbjct: 1129 GLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSP 1188

Query: 184  DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            D   F  LIDG C  G +  A  +L+ M      PD +TYNTLM+G C  G++E+A +L 
Sbjct: 1189 DAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLF 1248

Query: 244  DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            + +  RGIK +  S       YN LI G CK+Q+ D A     EM  KG+ P   TY +L
Sbjct: 1249 ESLADRGIKLNVFS-------YNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTL 1301

Query: 304  I 304
            I
Sbjct: 1302 I 1302



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 7/308 (2%)

Query: 9    DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
            D +TYG  +  +CK+G   EA  M  +M   G++P  V Y++L+DG C  G L+ A  F 
Sbjct: 1084 DVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 1143

Query: 69   DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             EM  +GI     TYN LIH L       E    L  M ++G  PD+ T+ ILI+G C+ 
Sbjct: 1144 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 1203

Query: 129  GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            G   +A  + + M HKG +P +LTY +L+  L    ++ +A +LFE+   +G+  ++  +
Sbjct: 1204 GKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSY 1263

Query: 189  NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            N LI+G+C +  I+ AF   +EM    + P  VTYNTL+   C+ G+V  A++L  +M+ 
Sbjct: 1264 NILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT 1323

Query: 249  RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             G     +  +    TY  L+ GLCKN   + A +L + +      P+   +  L++G+ 
Sbjct: 1324 CG---QFLKLS----TYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMC 1376

Query: 309  SVDKAAES 316
               K  E+
Sbjct: 1377 RAGKLEEA 1384



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 160/308 (51%), Gaps = 8/308 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +G+  D+ TYG  ++G+CK  +   A ++ E+MK N       TY  +ID  C  G 
Sbjct: 1042 MTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGN-CKGDVFTYGMIIDALCKDGM 1100

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               A     EM+  GI+P    Y+ L+  L    ++ EA +  KEM  +GI  D  TYN 
Sbjct: 1101 TTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNS 1160

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+G  R G  K+     + M+ +G  P   T+T LI  L K+ ++ EA Q+ E    KG
Sbjct: 1161 LIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKG 1220

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              PDI+ +N L++G C  G +E A  L + +    +  +  +YN L++G C+  K++EA 
Sbjct: 1221 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF 1280

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            R  ++M+ +G+KP  +       TYN LI  LC++     A++L  EM + G     +TY
Sbjct: 1281 RFFEEMRPKGLKPSTV-------TYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTY 1333

Query: 301  FSLIEGIA 308
              L++G+ 
Sbjct: 1334 CVLLDGLC 1341



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 156/311 (50%), Gaps = 10/311 (3%)

Query: 8    PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
            P + T+   ++ + K G       M  ++ + G+ P   T N LI   C+   +   F  
Sbjct: 944  PCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGV 1003

Query: 68   RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
                +K+G  P A T   L+  + ME  + +A  +  EM +KG++ D+ TY ILING C+
Sbjct: 1004 FGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCK 1063

Query: 128  CGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
                  A  LH++M  KG  +  + TY  +I  L K     EA  +F   +  G+LPD+V
Sbjct: 1064 ARKTGLAIKLHEKM--KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVV 1121

Query: 187  MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++++L+DG C  G ++ A    KEM+   +  D  TYN+L+HG  R G  +E    L+ M
Sbjct: 1122 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLM 1181

Query: 247  KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              RG       F+P   T+  LI GLCK  +   A+++L  M  KG  PD  TY +L+ G
Sbjct: 1182 VDRG-------FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNG 1234

Query: 307  IASVDKAAESS 317
            +  V +  +++
Sbjct: 1235 LCLVGQLEDAT 1245



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%)

Query: 12   TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            TY   + G+CK G LEEA  + + +K+    P    ++ L+DG C  G LE A+   DE+
Sbjct: 1332 TYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 1391

Query: 72   VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             K G+ P    YN+LI+ L  +  + EA  +L +M EKG +PDSIT+N++I    +    
Sbjct: 1392 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 1451

Query: 132  KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
             +A  L +EM ++   P     + L+ + S   +   A     N L KG+
Sbjct: 1452 HEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 1501



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 29/220 (13%)

Query: 126  CRCGNAK--KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            CR G  K   A  L D  +     P   T+  L+  ++K         ++      G+ P
Sbjct: 920  CRFGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQP 979

Query: 184  DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            D+   N LI   C+   +   F +     +    PD VT  TL+ G   +  + +A +L 
Sbjct: 980  DLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLF 1039

Query: 244  DQMKRRGIKPDHISF---------------------------NPTRLTYNALIQGLCKNQ 276
            D+M ++G+  D  ++                                TY  +I  LCK+ 
Sbjct: 1040 DEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDG 1099

Query: 277  EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                A ++  EM+  GI PD   Y SL++G+    +  E+
Sbjct: 1100 MTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 1139


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 163/291 (56%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E +M EA+ +  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+++G  P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF L + M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M R G+KPD         TY  ++   CK  +   A ELLREM   G  P
Sbjct: 371 EMLRVGLKPDD-------ETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G + +A       K++       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E +M  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K++RM EA+ LF   L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + ++M      PD VTYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R LLD+M R+G+KPD I       TY  LI G CK  + + A EL   M+ + I  DD  
Sbjct: 296 RYLLDEMSRKGLKPDKI-------TYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVV 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    +A ++
Sbjct: 349 YTALIFGLCQEGRAVDA 365



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 137/222 (61%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE R++EA+ +  +M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A     +M+ QG  P   TYN LI+ L  +  + +A  +L EM  KG+ PD ITY  
Sbjct: 257 LDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF L + MI + I+   + YT+LIF L ++ R ++A+++    L  G
Sbjct: 317 LIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +++  C  G++++A  LL+EM R    P  VT
Sbjct: 377 LKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCVVT 418


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P    Y  FV  +CK G++ EA  +++ MK+    P  VT+NTLI G C  G L+ A
Sbjct: 49  GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEM + G      TYN LI+ L    +  EA  +++ M      PD+ TYN +I+G
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGM---TTTPDTQTYNAIIHG 165

Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-KGML 182
           +C+ G   +A+   +EM  + G  P   TY+ LI  L K + + +AD+L +  +  K   
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCC 225

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
             +V FN L+DG+C   +++RA  LL  M      PD VTY+T++ G CR G V++   L
Sbjct: 226 ASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFAL 285

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L++M  RG KPD +       TY  L+ GLCK  +   A  L++ M+  G TP+  TY  
Sbjct: 286 LEKMVSRGCKPDVV-------TYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSL 338

Query: 303 LIEGIASVDK 312
           + +G+  +DK
Sbjct: 339 VFDGLCKIDK 348



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 176/320 (55%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK    +PD  T+ + ++G+CK GRL+EA ++L++M+ +G     VTYNTLI+G  + G 
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 61  LEMAFSFRDEMVKQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSIT 117
                S    +V QG+   P   TYN +IH      ++  A   L+EM ++ G  PD+ T
Sbjct: 140 -----SGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFT 194

Query: 118 YNILINGYCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           Y+ILING C+  N +KA  L  EMI  K    +++ + +L+    K   +  A +L  + 
Sbjct: 195 YSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSM 254

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           L  G  PD+V ++ +IDG C  G++++ F+LL++M      PD VTY  L+ G C+ GK+
Sbjct: 255 LEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKM 314

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA RL+ +M   G  P+ +       TY+ +  GLCK  + D+A +LL  +  KG   D
Sbjct: 315 VEACRLVKRMLEDGCTPNAV-------TYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTD 367

Query: 297 DNTYFSLIEGIAS--VDKAA 314
              + +L+  +    +D+AA
Sbjct: 368 VVAFETLLLSVKKRLLDRAA 387



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 139/271 (51%), Gaps = 14/271 (5%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKE 105
           TY  L+  +C  G L+ A     EM +Q G+ PT S YN  +H L    K+ EA +++K 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M +    PD +T+N LI G C+ G   +A  + DEM   G    ++TY +LI  LS   R
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYN 224
             EA  + +        PD   +NA+I G C +G I+RA+  L+EM  R    PD  TY+
Sbjct: 140 SGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYS 196

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L++G C+   + +A  LL +M  R           + + +N L+ G CK Q+ D A EL
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRK------DCCASVVAFNTLVDGYCKAQDLDRAREL 250

Query: 285 LREMVSKGITPDDNTYFSLIEGIA---SVDK 312
           L  M+  G  PD  TY ++I+G+     VDK
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGDVDK 281


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 167/306 (54%), Gaps = 10/306 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK---GN 60
           R V PD YT+ + +SG+C+ G+L +A  + + +K  GL P+  TYN+LIDGYC K   GN
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +        EMV+ GI PTA T+ +LI+          A  + +EM ++GI    +TYN 
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  ++   L +EM   G+ P  +T+  ++    K+  M +A+   +    + 
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V++N LID +   G +E A ++ + M +  + P+  TYN L+ G  R G    A 
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD+MK +GI+ D +       TYN LI  LC   E   A +LL EM   G+ P+  TY
Sbjct: 425 GLLDEMKEKGIEADVV-------TYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTY 477

Query: 301 FSLIEG 306
            ++I+G
Sbjct: 478 NTIIQG 483



 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 176/338 (52%), Gaps = 31/338 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEG---RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           +K+ G+ P   TY S + G CK+G    +     +L++M E G+ PTAVT+  LI+GYC 
Sbjct: 217 IKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCK 276

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
             N   A    +EM +QGI  +  TYN LI  L  E K+ E   +++EM + G+ P+ IT
Sbjct: 277 NSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEIT 336

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  ++ G+C+ G    A    D M  + ++P ++ Y  LI V  +  +M +A  + E   
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA 396

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P++  +N LI G   +G+   A  LL EM    +  D VTYN L+   C +G+V 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVR 456

Query: 238 EARRLLDQMKRRGIKPDHISFNP------------------TRL----------TYNALI 269
           +A +LLD+M   G++P+H+++N                   TR+          TYN  I
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +  C+  + D A +LL EM+ K + P+  TY ++ EG+
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGM 554



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 159/296 (53%), Gaps = 23/296 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+     TY S +SG+C EG++EE  +++E+M++ GL P  +T+  ++ G+C KG 
Sbjct: 290 MKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGM 349

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  + D M ++ + P    YN+LI       KM +A  + + M +KGI P+  TYN 
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 409

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+ R G+ + A  L DEM  KGI+  ++TY  LI  L  +  + +A +L +     G
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +N +I G C  GNI+ A+ +   M++ +   + VTYN  +   C+ GK++EA 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN 529

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            LL++M  + + P+ I       TY  + +G                M+ KG TPD
Sbjct: 530 DLLNEMLDKCLVPNGI-------TYETIKEG----------------MMEKGYTPD 562



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 31/293 (10%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P+  + N L+ G      +++A       +++ + P   T+N +I  L    ++ +A D+
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS---LHDEMIHKGIQPTMLTYTSLIFV 159
            K++   G+ P   TYN LI+GYC+ G A   +    L  EM+  GI PT +T+  LI  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
             K +    A ++FE    +G+   +V +N+LI G C+ G +E    L++EM+ + + P+
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------------- 259
           E+T+  ++ G C++G + +A   +D M  R ++PD + +N                    
Sbjct: 334 EITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKE 393

Query: 260 --------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                   P   TYN LI G  ++ +   A  LL EM  KGI  D  TY  LI
Sbjct: 394 AMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLI 446



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
           A  AF L  E  H   +P+  +  +L+  L    R+  A++ F + L + + PDI  FN 
Sbjct: 138 AYDAFLLAGES-HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNT 196

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ---GKVEEARRLLDQMK 247
           +I G C  G + +A  + K++    + P   TYN+L+ G C++   G +     LL +M 
Sbjct: 197 VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMV 256

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             GI       +PT +T+  LI G CKN     A  +  EM  +GI     TY SLI G+
Sbjct: 257 EAGI-------SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL 309

Query: 308 ASVDKAAE 315
            S  K  E
Sbjct: 310 CSEGKVEE 317


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P    Y  FV  +CK G++ EA  +++ MK+    P  VT+NTLI G C  G L+ A
Sbjct: 49  GMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEA 108

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEM + G      TYN LI+ L    +  EA  +++ M      PD+ TYN +I+G
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGM---TTTPDTQTYNAIIHG 165

Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-KGML 182
           +C+ G   +A+   +EM  + G  P   TY+ LI  L K + + +AD+L +  +  K   
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCC 225

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
             +V FN L+DG+C   +++RA  LL  M      PD VTY+T++ G CR G V++   L
Sbjct: 226 ASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFAL 285

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L++M  RG KPD +       TY  L+ GLCK  +   A  L++ M+  G TP+  TY  
Sbjct: 286 LEKMVSRGCKPDVV-------TYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSL 338

Query: 303 LIEGIASVDK 312
           + +G+  +DK
Sbjct: 339 VFDGLCKIDK 348



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 176/320 (55%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK    +PD  T+ + ++G+CK GRL+EA ++L++M+ +G     VTYNTLI+G  + G 
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 61  LEMAFSFRDEMVKQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSIT 117
                S    +V QG+   P   TYN +IH      ++  A   L+EM ++ G  PD+ T
Sbjct: 140 -----SGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFT 194

Query: 118 YNILINGYCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           Y+ILING C+  N +KA  L  EMI  K    +++ + +L+    K   +  A +L  + 
Sbjct: 195 YSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSM 254

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           L  G  PD+V ++ +IDG C  G++++ F+LL++M      PD VTY  L+ G C+ GK+
Sbjct: 255 LEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKM 314

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA RL+ +M   G  P+ +       TY+ +  GLCK  + D+A +LL  +  KG   D
Sbjct: 315 VEACRLVKRMLEDGCTPNAV-------TYSLVFDGLCKIDKLDMANDLLTSIRDKGRITD 367

Query: 297 DNTYFSLIEGIAS--VDKAA 314
              + +L+  +    +D+AA
Sbjct: 368 VVAFEALLLSVKKRLLDRAA 387



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 139/271 (51%), Gaps = 14/271 (5%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKE 105
           TY  L+  +C  G L+ A     EM +Q G+ PT S YN  +H L    K+ EA +++K 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M +    PD +T+N LI G C+ G   +A  + DEM   G    ++TY +LI  LS   R
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYN 224
             EA  + +        PD   +NA+I G C +G I+RA+  L+EM  R    PD  TY+
Sbjct: 140 SGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYS 196

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L++G C+   + +A  LL +M  R           + + +N L+ G CK Q+ D A EL
Sbjct: 197 ILINGLCKSSNLRKADELLQEMIGRK------DCCASVVAFNTLVDGYCKAQDLDRAREL 250

Query: 285 LREMVSKGITPDDNTYFSLIEGIA---SVDK 312
           L  M+  G  PD  TY ++I+G+     VDK
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGDVDK 281


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 167/306 (54%), Gaps = 10/306 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK---GN 60
           R V PD YT+ + +SG+C+ G+L +A  + + +K  GL P+  TYN+LIDGYC K   GN
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +        EMV+ GI PTA T+ +LI+          A  + +EM ++GI    +TYN 
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  ++   L +EM   G+ P  +T+  ++    K+  M +A+   +    + 
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V++N LID +   G +E A ++ + M +  + P+  TYN L+ G  R G    A 
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD+MK +GI+ D +       TYN LI  LC   E   A +LL EM   G+ P+  TY
Sbjct: 425 GLLDEMKEKGIEADVV-------TYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTY 477

Query: 301 FSLIEG 306
            ++I+G
Sbjct: 478 NTIIQG 483



 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 176/338 (52%), Gaps = 31/338 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEG---RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           +K+ G+ P   TY S + G CK+G    +     +L++M E G+ PTAVT+  LI+GYC 
Sbjct: 217 IKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCK 276

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
             N   A    +EM +QGI  +  TYN LI  L  E K+ E   +++EM + G+ P+ IT
Sbjct: 277 NSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEIT 336

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  ++ G+C+ G    A    D M  + ++P ++ Y  LI V  +  +M +A  + E   
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA 396

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P++  +N LI G   +G+   A  LL EM    +  D VTYN L+   C +G+V 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVR 456

Query: 238 EARRLLDQMKRRGIKPDHISFNP------------------TRL----------TYNALI 269
           +A +LLD+M   G++P+H+++N                   TR+          TYN  I
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +  C+  + D A +LL EM+ K + P+  TY ++ EG+
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGM 554



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 159/296 (53%), Gaps = 23/296 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+     TY S +SG+C EG++EE  +++E+M++ GL P  +T+  ++ G+C KG 
Sbjct: 290 MKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGM 349

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  + D M ++ + P    YN+LI       KM +A  + + M +KGI P+  TYN 
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 409

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+ R G+ + A  L DEM  KGI+  ++TY  LI  L  +  + +A +L +     G
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +N +I G C  GNI+ A+ +   M++ +   + VTYN  +   C+ GK++EA 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN 529

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            LL++M  + + P+ I       TY  + +G                M+ KG TPD
Sbjct: 530 DLLNEMLDKCLVPNGI-------TYETIKEG----------------MMEKGYTPD 562



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 31/293 (10%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P+  + N L+ G      +++A       +++ + P   T+N +I  L    ++ +A D+
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS---LHDEMIHKGIQPTMLTYTSLIFV 159
            K++   G+ P   TYN LI+GYC+ G A   +    L  EM+  GI PT +T+  LI  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
             K +    A ++FE    +G+   +V +N+LI G C+ G +E    L++EM+ + + P+
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------------- 259
           E+T+  ++ G C++G + +A   +D M  R ++PD + +N                    
Sbjct: 334 EITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKE 393

Query: 260 --------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                   P   TYN LI G  ++ +   A  LL EM  KGI  D  TY  LI
Sbjct: 394 AMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLI 446



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
           A  AF L  E  H   +P+  +  +L+  L    R+  A++ F + L + + PDI  FN 
Sbjct: 138 AYDAFLLAGES-HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNT 196

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ---GKVEEARRLLDQMK 247
           +I G C  G + +A  + K++    + P   TYN+L+ G C++   G +     LL +M 
Sbjct: 197 VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMV 256

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             GI       +PT +T+  LI G CKN     A  +  EM  +GI     TY SLI G+
Sbjct: 257 EAGI-------SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL 309

Query: 308 ASVDKAAE 315
            S  K  E
Sbjct: 310 CSEGKVEE 317


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  193 bits (491), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 168/308 (54%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+   Y + +    ++ R  +A R+L++M+E G+ P    YN+LI G      
Sbjct: 446 MGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKK 505

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A SF  EMV+ G  P A TY   I   +   +   AD  +KEM E G++P+ +    
Sbjct: 506 MDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTG 565

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G   +A S    M+ +GI     TYT L+  L K  ++ +A+++F     KG
Sbjct: 566 LINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKG 625

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  LIDG    GN+++A S+  EM +  +  + + YN L+ G CR G++E+A+
Sbjct: 626 IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAK 685

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LLD+M  +G       F P  +TY  +I G CK+  GDLAE  +L  EM  KG+ PD  
Sbjct: 686 ELLDEMSGKG-------FPPNAVTYCTIIDGYCKS--GDLAEAFQLFDEMKLKGLVPDSF 736

Query: 299 TYFSLIEG 306
            Y +L++G
Sbjct: 737 VYTTLVDG 744



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 170/347 (48%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD++TYG+F+SG  + G    A + +++M E G++P  V    LI+ YC KG 
Sbjct: 516 MVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGK 575

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    MV+QGI+  A TY +L++ L+   K+ +A+++  EM  KGI PD  +Y  
Sbjct: 576 VIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGT 635

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN +KA S+ DEM+  G+   ++ Y  L+    +   + +A +L +    KG
Sbjct: 636 LIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKG 695

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V +  +IDG+C +G++  AF L  EM    + PD   Y TL+ G CR   VE A 
Sbjct: 696 FPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 755

Query: 241 RLLDQMKRRGIKPDHISFN--------------------------------PTRLTYNAL 268
            +  +   +G       FN                                P  +TYN +
Sbjct: 756 TIF-ETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIM 814

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           I  LCK    + A+EL   M    + P   TY SL+ G   + + +E
Sbjct: 815 IDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSE 861



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 161/307 (52%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD++ Y S + G+ K  +++EA   L +M ENG  P A TY   I GY   G 
Sbjct: 481 MREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGE 540

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  +  EM++ G++P       LI+E   + K++EA    + M E+GI+ D+ TY +
Sbjct: 541 FASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTV 600

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG  + G    A  +  EM  KGI P + +Y +LI   SK   M +A  +F+  +  G
Sbjct: 601 LMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAG 660

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +++++N L+ G C +G IE+A  LL EM      P+ VTY T++ G C+ G + EA 
Sbjct: 661 LTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAF 720

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+MK +G+ PD          Y  L+ G C+  + + A  +  E   KG       +
Sbjct: 721 QLFDEMKLKGLVPDS-------FVYTTLVDGCCRLNDVERAITIF-ETNEKGCASSSAPF 772

Query: 301 FSLIEGI 307
            +LI  +
Sbjct: 773 NALINWV 779



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 162/379 (42%), Gaps = 63/379 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M S G   D   Y  F+  M KEG +E+A  + + M   G+ P A  Y +LI+G+     
Sbjct: 341 MVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKN 400

Query: 56  ------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                         C+ G+L+ A++   EM   G  P    Y  
Sbjct: 401 VRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTT 460

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI   L + +  +A  +LKEM E+GI PD+  YN LI G  +     +A S   EM+  G
Sbjct: 461 LIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENG 520

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P   TY + I    +      AD+  +  L  G++P+ V+   LI+ +C  G +  A 
Sbjct: 521 FKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEAC 580

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
           S  + M    +  D  TY  LM+G  + GKV +A  +  +M+ +GI PD  S+       
Sbjct: 581 SAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGF 640

Query: 259 ---------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                    + YN L+ G C++ E + A+ELL EM  KG  P+ 
Sbjct: 641 SKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNA 700

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY ++I+G       AE+
Sbjct: 701 VTYCTIIDGYCKSGDLAEA 719



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 170/375 (45%), Gaps = 71/375 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D+ TY   ++G+ K G++ +A  +  +M+  G+ P   +Y TLIDG+   GN
Sbjct: 586 MVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGN 645

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  DEMV+ G+      YN+L+       ++ +A ++L EM  KG  P+++TY  
Sbjct: 646 MQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCT 705

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE------ 174
           +I+GYC+ G+  +AF L DEM  KG+ P    YT+L+    + N +  A  +FE      
Sbjct: 706 IIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGC 765

Query: 175 ---------------------------NFLAKGML-----PDIVMFNALIDGHCTNGNIE 202
                                      N L  G       P+ V +N +ID  C  GN+E
Sbjct: 766 ASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLE 825

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP-- 260
            A  L   M +  + P  +TY +L++G  + G+  E   + D++   GI+PD+I ++   
Sbjct: 826 AAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVII 885

Query: 261 -------------------------------TRLTYNALIQGLCKNQEGDLAEELLREMV 289
                                          +  T  AL+ G  K  E ++AE+++  MV
Sbjct: 886 NAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMV 945

Query: 290 SKGITPDDNTYFSLI 304
                PD +T   LI
Sbjct: 946 RLKYIPDSSTVIELI 960



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 161/388 (41%), Gaps = 77/388 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M  +G+ P   +Y   + G+CK+ RLE+A  +L +M   GL    V Y+ LIDG      
Sbjct: 271 MSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRN 330

Query: 56  ------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                           +G +E A +  D M+  G+ P A  Y  
Sbjct: 331 ADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYAS 390

Query: 86  LI------------HELLMERK-----------------MVEADDM------LKEMGEKG 110
           LI            +ELL+E K                 M  + D+      +KEMG  G
Sbjct: 391 LIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASG 450

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
             P+ + Y  LI  + +      A  +  EM  +GI P    Y SLI  LSK  +M EA 
Sbjct: 451 CRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEAR 510

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
                 +  G  PD   + A I G+   G    A   +KEM    V P++V    L++  
Sbjct: 511 SFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEY 570

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C++GKV EA      M  +GI  D         TY  L+ GL KN + + AEE+  EM  
Sbjct: 571 CKKGKVIEACSAFRSMVEQGILGDA-------KTYTVLMNGLVKNGKVNDAEEIFHEMRG 623

Query: 291 KGITPDDNTYFSLIEGIASVDKAAESSN 318
           KGI PD  +Y +LI+G + +    ++S+
Sbjct: 624 KGIAPDVFSYGTLIDGFSKLGNMQKASS 651



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 155/339 (45%), Gaps = 34/339 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLE---------------------EASRMLEQMKEN 39
           M  R V  D  +Y   +   C++G ++                     EA  + + M   
Sbjct: 215 MVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCK 274

Query: 40  GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99
           GLVP+  +YN LIDG C +  LE A S   EM   G+      Y++LI  LL  R    A
Sbjct: 275 GLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAA 334

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
           + ++ EM   G   D + Y+  I    + G  +KA +L D MI  G+ P    Y SLI  
Sbjct: 335 NGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEG 394

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
             ++  + +  +L      + ++     +   + G C++G+++ A++++KEM      P+
Sbjct: 395 FFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPN 454

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            V Y TL+    ++ +  +A R+L +M+ +GI PD          YN+LI GL K ++ D
Sbjct: 455 VVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPD-------TFCYNSLIIGLSKAKKMD 507

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEG------IASVDK 312
            A   L EMV  G  PD  TY + I G       AS DK
Sbjct: 508 EARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADK 546



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 123/274 (44%), Gaps = 43/274 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P++ TY + + G CK G L EA ++ ++MK  GLVP +  Y TL+DG C   +
Sbjct: 691 MSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLND 750

Query: 61  LEMA-------------------------FSF-RDEMVKQGI------------MPTAST 82
           +E A                         F F + E+    I             P   T
Sbjct: 751 VERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVT 810

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           YN++I  L  E  +  A ++   M +  ++P  ITY  L+NGY + G   + FS+ DE+I
Sbjct: 811 YNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVI 870

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD-----IVMFNALIDGHCT 197
             GI+P  + Y+ +I    K+    +A  L +   AK  + D     I    AL+ G   
Sbjct: 871 AAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAK 930

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
            G +E A  +++ M R+K  PD  T   L++  C
Sbjct: 931 VGEMEVAEKVVENMVRLKYIPDSSTVIELINESC 964



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 148/344 (43%), Gaps = 52/344 (15%)

Query: 9   DSYTYGSFVSGMCKEGRLEEAS----RMLEQMKENGLVPTAVT----------------Y 48
           DS+++ +    +C  G +E+A     RM+E+      V +++                 +
Sbjct: 98  DSFSFLAL--DLCNFGSIEKAHSVVIRMIERKWPVAEVWSSIVRCLREFVGKSDDRVLLF 155

Query: 49  NTLIDGYCNKGNL-EMAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
             LIDGY  KG L E  F F     +   ++P+ +  N L+  LL   ++    D+ K M
Sbjct: 156 GILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYKGM 215

Query: 107 GEKGIVPDSITYNILINGYCRCGNAK---------------------KAFSLHDEMIHKG 145
            E+ +V D  +Y +LI  +CR GN +                     +A  L   M  KG
Sbjct: 216 VERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCKG 275

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P+  +Y  LI  L KQ R+ +A  L     + G+  D V ++ LIDG     N + A 
Sbjct: 276 LVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAAN 335

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+ EM       D + Y+  +    ++G +E+A+ L D M   G+        P    Y
Sbjct: 336 GLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGV-------TPGARAY 388

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            +LI+G  + +      ELL E+  + I     TY + ++G+ S
Sbjct: 389 ASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCS 432



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 43/243 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE---------NGLV--------- 42
           MK +G+ PDS+ Y + V G C+   +E A  + E  ++         N L+         
Sbjct: 726 MKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKT 785

Query: 43  --------------------PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST 82
                               P  VTYN +ID  C +GNLE A      M K  +MPT  T
Sbjct: 786 ELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVIT 845

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y  L++      +  E   +  E+   GI PD+I Y+++IN + + G   KA  L D+M 
Sbjct: 846 YTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMF 905

Query: 143 HK-----GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
            K     G + ++ T  +L+   +K   M  A+++ EN +    +PD      LI+  C 
Sbjct: 906 AKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCI 965

Query: 198 NGN 200
           + N
Sbjct: 966 SSN 968



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 40/168 (23%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TY   +  +CKEG LE A  +   M++  L+PT +TY +L++GY   G     FS
Sbjct: 805 KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFS 864

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLME----RKMVEADDMLK------------------ 104
             DE++  GI P    Y+++I+  L E    + +V  D M                    
Sbjct: 865 VFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRAL 924

Query: 105 ----------EMGEKGI--------VPDSITYNILINGYCRCGNAKKA 134
                     E+ EK +        +PDS T   LIN  C   N + A
Sbjct: 925 LSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMA 972


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 176/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P +++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G   + F L   M+  G+QP + TY+ LI  LSK+++M +AD+LF+  L K
Sbjct: 182 TLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 242 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D M R+G+KPD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 HDLIDDMSRKGLKPD-------KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVV 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 165/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+AV+YNTL++GY   G L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +AD++  EM  KG+VP+ +T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L ++   KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+ PD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLNPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+ KE ++++A  + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ +M  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K  G+ P+ YTYG F+  +C++G  EEA  +  +M+E G+ P AVT +T I+G C+   
Sbjct: 218 LKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKR 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ +     +           Y  +I     E K+ EA+D+  +M  +GI PD   Y  
Sbjct: 278 SDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGA 337

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ GN  +A +LH++M+  GI+   +  +S++  L +     E    F+ F   G
Sbjct: 338 LIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSG 397

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V++N ++D  C  G +E A  LL EM   ++  D V Y TL+ G C QGK+ +A+
Sbjct: 398 IFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAK 457

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + ++MK RGI+PD +       TYN L+ G  +N     A ELL  + ++G+ P+  T+
Sbjct: 458 NMFEEMKERGIEPDIV-------TYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATH 510

Query: 301 FSLIEGIASVDKAAES 316
             +IEG+    K  E+
Sbjct: 511 NRIIEGLCMAGKVKEA 526



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 161/327 (49%), Gaps = 28/327 (8%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G++P+S T+   + G+C  G+++EA   L  +++  L      Y+ ++DGYC      
Sbjct: 500 TQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSAMVDGYCKANFTR 555

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+     + KQGI+    +   L+  L ME +  +A  +L+ M    + P+ I Y  LI
Sbjct: 556 KAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLI 615

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
             +CR G+ K+A  + D ++ +GI P ++TYT +I    + N + EA  +F +   +G+ 
Sbjct: 616 GAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIK 675

Query: 183 PDIVMFNALIDGHCTNGNIERAFSL----------------LKEMDRMKVHPDEVTYNTL 226
           PD++ +  ++DGH +  N++ A SL                  EM  M + PD V Y  L
Sbjct: 676 PDVITYTVVLDGH-SKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVL 734

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           +   C+   +++A  L D+M  RG++PD +       TY AL+   C   + D A  L+ 
Sbjct: 735 IDSHCKTNNLQDAINLYDEMIARGLQPDIV-------TYTALLSSCCSRGDMDRAITLVN 787

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKA 313
           EM  KGI PD      L  GI    K 
Sbjct: 788 EMSFKGIEPDSRAMSVLHRGILKARKV 814



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 144/300 (48%), Gaps = 11/300 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D++ Y + + G C E +L+EA  +   M   G+ P    Y  LI  YC  GNL  A +  
Sbjct: 296 DTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALH 355

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           ++MV  GI       + ++  L       E  D  KE  + GI  D + YNI+++  C+ 
Sbjct: 356 NDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKL 415

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  ++A  L +EM  + +   ++ YT+LI     Q ++++A  +FE    +G+ PDIV +
Sbjct: 416 GKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTY 475

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N L+ G   NG  + A  LL  +    + P+  T+N ++ G C  GKV+EA   L+ ++ 
Sbjct: 476 NILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLED 535

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + ++            Y+A++ G CK      A EL   +  +GI     + F L+  + 
Sbjct: 536 KCLE-----------NYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLC 584



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 140/307 (45%), Gaps = 7/307 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K RG  P   +    ++ + + G+++ A  +   +K  GL P   TY   I   C KGN 
Sbjct: 184 KRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNF 243

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           E A     EM + G+ P A T +  I  L   ++     + L+ +       D+  Y  +
Sbjct: 244 EEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAV 303

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I G+C     K+A  +  +M+++GI P    Y +LI    K   +++A  L  + ++ G+
Sbjct: 304 IRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGI 363

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             + V+ ++++   C  G         KE     +  DEV YN ++   C+ GKVEEA  
Sbjct: 364 KTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVE 423

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL++MK R +  D +        Y  LI G C   +   A+ +  EM  +GI PD  TY 
Sbjct: 424 LLNEMKGRRMSLDVVH-------YTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYN 476

Query: 302 SLIEGIA 308
            L+ G +
Sbjct: 477 ILVGGFS 483



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 130/253 (51%), Gaps = 17/253 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +G+     +    +S +C EG  ++A  +LE+M    + P  + Y  LI  +C  G+
Sbjct: 564 LSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGD 623

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D +V++GI P   TY ++I+       + EA D+  +M E+GI PD ITY +
Sbjct: 624 MKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTV 683

Query: 121 LINGYCRCGNAKKAFSLH----------------DEMIHKGIQPTMLTYTSLIFVLSKQN 164
           +++G+ +  N K A SL                  EM   GI+P ++ YT LI    K N
Sbjct: 684 VLDGHSKV-NLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTN 742

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            + +A  L++  +A+G+ PDIV + AL+   C+ G+++RA +L+ EM    + PD    +
Sbjct: 743 NLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMS 802

Query: 225 TLMHGRCRQGKVE 237
            L  G  +  KV+
Sbjct: 803 VLHRGILKARKVQ 815



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 7/218 (3%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA D L +   +G VP  ++ N L+N     G    A +++  +   G+ P   TY   I
Sbjct: 175 EAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFI 234

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L ++    EA  +F      G+ P+ V  +  I+G C++   +  +  L+ +      
Sbjct: 235 KALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWP 294

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
            D   Y  ++ G C + K++EA  +   M   GI PD          Y ALI   CK   
Sbjct: 295 IDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDG-------YIYGALIHAYCKAGN 347

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
              A  L  +MVS GI  +     S+++ +  +  A+E
Sbjct: 348 LLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASE 385



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 33/270 (12%)

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSIT--- 117
           +A+SF  ++ + G      TY  LI  L   R   +   +L E+   ++ ++   IT   
Sbjct: 79  LAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALF 138

Query: 118 ---------------------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
                                 ++L+  Y R G   +A     +   +G  P +++   L
Sbjct: 139 DVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFL 198

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           +  L +  ++  A  ++ +    G+ P+   +   I   C  GN E A  + +EM+   V
Sbjct: 199 MNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGV 258

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
           +P+ VT +T + G C   + +     L  ++      D  +       Y A+I+G C   
Sbjct: 259 NPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFA-------YTAVIRGFCSEM 311

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   AE++  +MV++GI PD   Y +LI  
Sbjct: 312 KLKEAEDVFIDMVNEGIAPDGYIYGALIHA 341


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 165/332 (49%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV PD  T+ + + G  +EG +E A R+  +M E G  PT VT N LI+GYC  G 
Sbjct: 223 MSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGR 282

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  +  + +  G  P   TYN  +H L     +  A  ++  M ++G  PD  TYN 
Sbjct: 283 VEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNT 342

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN   + G   +A  + ++M+ +G  P   T+ +LI  LS QNR+ EA  L      KG
Sbjct: 343 VINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKG 402

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN LI+  C  G+      L +EM      PDEVTYN L+   C  GK+  A 
Sbjct: 403 LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNAL 462

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL++M+  G     +++N                             + +T+N LI GL
Sbjct: 463 DLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGL 522

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           CK +  D A EL+ +MV +G+ P++ TY S++
Sbjct: 523 CKAKRIDDATELIEQMVKEGLQPNNITYNSIL 554



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 172/338 (50%), Gaps = 42/338 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY +FV G+C+ G +  A ++++ M + G  P   TYNT+I+     G L+ A
Sbjct: 297 GFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEA 356

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++MV +G +P  +T+N LI  L  + ++ EA D+ +E+  KG+ PD  T+NILIN 
Sbjct: 357 KGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINA 416

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQP-----------------------------------T 149
            C+ G+      L +EM   G  P                                   +
Sbjct: 417 LCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRS 476

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
            +TY ++I  L K+ R+ EA+++F+   A+G+    V FN LIDG C    I+ A  L++
Sbjct: 477 TVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIE 536

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           +M +  + P+ +TYN+++   C+QG +++A  +L+ M   G + D +       TY  LI
Sbjct: 537 QMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVV-------TYGTLI 589

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            GLCK     +A +LLR M  KGI P    Y  +I+ +
Sbjct: 590 NGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 627



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 171/346 (49%), Gaps = 31/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+QPD  T  + +  +C+  ++  A  MLE+M  +G+ P   T+ TL+ G+  +G+
Sbjct: 188 MTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGS 247

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   + +M++ G  PT  T N+LI+      ++ +A   +++    G  PD +TYN 
Sbjct: 248 IEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNT 307

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++G C+ G+   A  + D M+ +G  P + TY ++I  LSK   + EA  +    + +G
Sbjct: 308 FVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRG 367

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD   FN LI    +   +E A  L +E+    + PD  T+N L++  C+ G      
Sbjct: 368 CLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGI 427

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           RL ++MK  G  PD +++N                             + +TYN +I  L
Sbjct: 428 RLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDAL 487

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           CK    + AEE+  +M ++GI+    T+ +LI+G+     +D A E
Sbjct: 488 CKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATE 533



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 158/300 (52%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD+ T+ + +  +  + RLEEA  +  ++   GL P   T+N LI+  C  G+
Sbjct: 363 MVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGD 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +     +EM   G  P   TYN+LI  L    K+  A D+L EM   G    ++TYN 
Sbjct: 423 PHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNT 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+    ++A  + D+M  +GI  + +T+ +LI  L K  R+ +A +L E  + +G
Sbjct: 483 IIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG 542

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +N+++  +C  GNI++A  +L+ M       D VTY TL++G C+ G+ + A 
Sbjct: 543 LQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVAL 602

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M+ +GI+P   ++NP       +IQ L +      A  L REM   G  PD  TY
Sbjct: 603 KLLRGMRIKGIRPTPKAYNP-------VIQSLFRRNNLRDALNLFREMTEVGEPPDALTY 655



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 139/259 (53%), Gaps = 1/259 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G  PD  TY   +  +C  G+L  A  +L +M+ NG   + VTYNT+ID  C K  
Sbjct: 433 MKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMR 492

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D+M  QGI  +A T+N LI  L   +++ +A +++++M ++G+ P++ITYN 
Sbjct: 493 IEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNS 552

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ GN KKA  + + M   G +  ++TY +LI  L K  R   A +L      KG
Sbjct: 553 ILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKG 612

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           + P    +N +I       N+  A +L +EM  +   PD +TY  +    CR  G ++EA
Sbjct: 613 IRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEA 672

Query: 240 RRLLDQMKRRGIKPDHISF 258
              L +M  +G  P+  SF
Sbjct: 673 FDFLVEMVNKGFMPEFSSF 691



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GVQ D+  +   ++ + +  +L+    +  +M   G+ P  VT NTLI   C    +  A
Sbjct: 157 GVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTA 216

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM   G+ P  +T+  L+   + E  +  A  +  +M E G  P  +T N+LING
Sbjct: 217 VLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLING 276

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G  + A     + I  G +P  +TY + +  L +   +  A ++ +  L +G  PD
Sbjct: 277 YCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPD 336

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +I+    NG ++ A  ++ +M      PD  T+NTL+     Q ++EEA  L  
Sbjct: 337 VFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAR 396

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++  +G+ PD         T+N LI  LCK  +  L   L  EM S G TPD+ TY  LI
Sbjct: 397 ELTVKGLSPD-------VYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILI 449

Query: 305 EGIASVDK 312
           + + S+ K
Sbjct: 450 DHLCSMGK 457



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 39/144 (27%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D  TYG+ ++G+CK GR + A ++L  M+  G+ PT   YN +I     + N
Sbjct: 573 MTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNN 632

Query: 61  L--------EM----------------------------AFSFRDEMVKQGIMPTASTYN 84
           L        EM                            AF F  EMV +G MP  S++ 
Sbjct: 633 LRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFR 692

Query: 85  LLIHELL---MERKMVEADDMLKE 105
           +L   LL   M+  ++ A +++ E
Sbjct: 693 MLAEGLLNLGMDDYLISAIELIIE 716



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
           D   V  D V +N L++      K++    + ++M  RGI+PD +       T N LI+ 
Sbjct: 154 DTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVV-------TLNTLIKA 206

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           LC+  +   A  +L EM S G+ PD+ T+ +L++G 
Sbjct: 207 LCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGF 242


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 164/302 (54%), Gaps = 8/302 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+ +TYGS + G+CK G+L++A  +L++M++ G+ P    +N +I G C  G    A  +
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGY 87

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILINGYC 126
              +      P   T+N+L+  L+   ++ EA  + + M      +P+ +TY  +ING C
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A  L D M   G  P ++TY+ L+  L K  R  +   L +    +G  PD++
Sbjct: 148 KDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVI 207

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           M+N L++G C +  ++ A  L++ M R   +P  VTYN+LM   CR  +V+ A RL+  M
Sbjct: 208 MYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVM 267

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             RG  PD I+       YN +I GLC++   D A+ LL++MV+    PD  TY ++I+G
Sbjct: 268 SERGCPPDVIN-------YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDG 320

Query: 307 IA 308
           + 
Sbjct: 321 LC 322



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 165/323 (51%), Gaps = 14/323 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ P    +   + G+CK GR  +A    + +      P  +T+N L+D     G 
Sbjct: 56  MRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGR 115

Query: 61  LEMAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +E AF   + M      +P   TY  +I+ L  + K+  A ++L  M E G  P+ ITY+
Sbjct: 116 VEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +L+ G C+ G   K F+L  EM  +G QP ++ Y +L+  L K  R+ EA +L +  +  
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRS 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P +V +N+L++  C +  ++RAF L++ M      PD + YNT++ G CR  ++++A
Sbjct: 236 GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD------LAEELLREMVSKGI 293
           + LL QM      PD I       TY+ +I GLCK+   D       A E+L  M   G 
Sbjct: 296 QALLKQMVAARCVPDVI-------TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 294 TPDDNTYFSLIEGIASVDKAAES 316
            P+  TY  +IEG+    K+ ++
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQA 371



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 15/306 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKGNLEMAFS 66
           PD  T+   V  + K GR+EEA ++ E M  +   +P  VTY T+I+G C  G L+ A  
Sbjct: 98  PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIE 157

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D M + G  P   TY++L+  L    +  +   +L+EM  +G  PD I YN L+NG C
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +     +A  L   MI  G  PT++TY SL+ +  +  ++  A +L +    +G  PD++
Sbjct: 218 KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVI 277

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV------EEAR 240
            +N +I G C +  ++ A +LLK+M   +  PD +TY+T++ G C+  +V      E A 
Sbjct: 278 NYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAAC 337

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L+ MK+ G  P+         TY  +I+GLC+ ++   A  LLR M+   + PD ++ 
Sbjct: 338 EILEMMKQTGCPPNA-------GTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSS- 389

Query: 301 FSLIEG 306
           FS++ G
Sbjct: 390 FSMVIG 395



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 165/315 (52%), Gaps = 16/315 (5%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  TY + ++G+CK+G+L+ A  +L+ M E G  P  +TY+ L++G C  G  +  F+ 
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTL 193

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM ++G  P    YN L++ L   R++ EA ++++ M   G  P  +TYN L+  +CR
Sbjct: 194 LQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCR 253

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                +AF L   M  +G  P ++ Y ++I  L +  R+ +A  L +  +A   +PD++ 
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313

Query: 188 FNALIDGHC------TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           ++ +IDG C       +  +E A  +L+ M +    P+  TY  ++ G CR  K ++A  
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL +M    + PD  SF       + +I  LCK+ + D A ++   M  +   P+   Y 
Sbjct: 374 LLRRMIDSEVVPDLSSF-------SMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYA 426

Query: 302 SLIEGIAS---VDKA 313
           +LI+G++    VDKA
Sbjct: 427 ALIDGLSKGGEVDKA 441



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 161/350 (46%), Gaps = 35/350 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY   V G+CK GR ++   +L++M   G  P  + YNTL++G C    
Sbjct: 162 MNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR 221

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M++ G  PT  TYN L+      +++  A  +++ M E+G  PD I YN 
Sbjct: 222 LDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNT 281

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD-------QLF 173
           +I G CR      A +L  +M+     P ++TY+++I  L K  R ++AD       ++ 
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWR-VDADWKLEAACEIL 340

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           E     G  P+   +  +I+G C     ++A +LL+ M   +V PD  +++ ++   C+ 
Sbjct: 341 EMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400

Query: 234 GKVEEARRLLDQMKRRGIKPDHI---------------------------SFNPTRLTYN 266
             ++ A ++   M  R  KP+ +                           SF P   TYN
Sbjct: 401 HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYN 460

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +++ GLC     + A  ++  M+ K   PD  +Y +LI G+  V    E+
Sbjct: 461 SVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEA 510



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 14/298 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG- 59
           M  RG  PD   Y + ++G+C++ RL++A  +L+QM     VP  +TY+T+IDG C    
Sbjct: 267 MSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWR 326

Query: 60  -----NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
                 LE A    + M + G  P A TY ++I  L   RK  +A  +L+ M +  +VPD
Sbjct: 327 VDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPD 386

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             +++++I   C+  +   A+ +   M  +  +P  + Y +LI  LSK   + +A ++FE
Sbjct: 387 LSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +   P +  +N+++DG C  G IE A  +++ M   +  PD  +Y  L+ G CR  
Sbjct: 447 -LMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVS 505

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            VEEA  L   ++ +G       F      YN L+  LCK +    A  +  +++  G
Sbjct: 506 CVEEAYELFQAVEAKG-------FAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 162/345 (46%), Gaps = 49/345 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QPD   Y + ++G+CK  RL+EA  +++ M  +G  PT VTYN+L++ +C    
Sbjct: 197 MTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQ 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN- 119
           ++ AF     M ++G  P    YN +I  L  + ++ +A  +LK+M     VPD ITY+ 
Sbjct: 257 VDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYST 316

Query: 120 ----------------------------------------ILINGYCRCGNAKKAFSLHD 139
                                                   ++I G CR   +++A +L  
Sbjct: 317 IIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLR 376

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
            MI   + P + +++ +I  L K + +  A ++F     +   P+ V + ALIDG    G
Sbjct: 377 RMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGG 436

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            +++A  + + M      P   TYN+++ G C  G++EEA R+++ M  +   PD  S  
Sbjct: 437 EVDKAVRVFELMVE-SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGAS-- 493

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                Y ALI+GLC+    + A EL + + +KG   +   Y  L+
Sbjct: 494 -----YGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLV 533



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 8/210 (3%)

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
           E+  VP+  TY  LI+G C+ G   +A+ L DEM  +GI P +  +  +I  L K  R  
Sbjct: 23  EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFG 82

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTL 226
           +A   F+        PDI+ FN L+D    +G +E AF + + M    +  P+ VTY T+
Sbjct: 83  DALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTV 142

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           ++G C+ GK++ A  LLD M   G  P+ I       TY+ L++GLCK    D    LL+
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVI-------TYSVLVEGLCKAGRTDKGFTLLQ 195

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           EM  +G  PD   Y +L+ G+    +  E+
Sbjct: 196 EMTRRGFQPDVIMYNTLLNGLCKSRRLDEA 225


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 176/316 (55%), Gaps = 11/316 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   +   YG+ ++G+CK G+   A ++L ++    + P  V YNT+ID  C    +  A
Sbjct: 156 GFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 215

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EMV +GI P   TY+ LI    +  K+ +A  +  +M  + I PD  T++IL++G
Sbjct: 216 FDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDG 275

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGML 182
           +C+ G  K+A ++   M+ +GI+P ++TY SL+  + L KQ    +A  +F      G+ 
Sbjct: 276 FCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVN--KAKSIFNTMAQGGVT 333

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            ++  +N +I+G C    ++ A +L KEM    + PD VTYN+L+ G C+ GK+  A +L
Sbjct: 334 ANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKL 393

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +D+M  RG+  D       ++TYN+++  LCKN + D A  LL +M  +GI PD  TY  
Sbjct: 394 VDEMHDRGVPHD-------KITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTI 446

Query: 303 LIEGIASVDKAAESSN 318
           LI+G+    +  ++ N
Sbjct: 447 LIDGLCKGGRLKDAQN 462



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 162/306 (52%), Gaps = 7/306 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQP+   Y + +  MCK   + EA  +  +M   G+ P  VTY+ LI G+C  G L  A 
Sbjct: 192 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAI 251

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              ++M+ + I P   T+++L+     E ++ EA ++L  M ++GI PD +TY  L++GY
Sbjct: 252 GLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGY 311

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C      KA S+ + M   G+   + +Y  +I    K  ++ EA  LF+    K ++PD+
Sbjct: 312 CLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDV 371

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N+LIDG C +G I  A  L+ EM    V  D++TYN+++   C+  +V++A  LL +
Sbjct: 372 VTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK 431

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MK  GI+PD         TY  LI GLCK      A+ +  +++ KG      TY  +I+
Sbjct: 432 MKDEGIQPD-------MYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQ 484

Query: 306 GIASVD 311
           G    D
Sbjct: 485 GFCDND 490



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ PD  TY + +SG C  G+L +A  +  +M    + P   T++ L+DG+C +G 
Sbjct: 222 MVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGR 281

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    M+KQGI P   TY  L+    + +++ +A  +   M + G+  +  +YNI
Sbjct: 282 VKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNI 341

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     +A +L  EM  K I P ++TY SLI  L K  ++  A +L +    +G
Sbjct: 342 MINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRG 401

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D + +N+++D  C N  +++A +LL +M    + PD  TY  L+ G C+ G++++A+
Sbjct: 402 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQ 461

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +  +G       +N T  TY  +IQG C N   D A  LL +M   G  P+  TY
Sbjct: 462 NIFEDLLVKG-------YNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTY 514



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 160/314 (50%), Gaps = 7/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D  T+   ++   + G    +  +   + + G  P A+T  TLI G C KG 
Sbjct: 82  MEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQ 141

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D++V  G       Y  LI+ L    +   A  +L+ +  K + P+ + YN 
Sbjct: 142 IHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNT 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF L+ EM+ KGI P ++TY++LI       ++ +A  LF   +++ 
Sbjct: 202 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEE 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  F+ L+DG C  G ++ A ++L  M +  + PD VTY +LM G C   +V +A+
Sbjct: 262 INPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAK 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + M + G+  +  S       YN +I G CK ++ D A  L +EM  K I PD  TY
Sbjct: 322 SIFNTMAQGGVTANVQS-------YNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTY 374

Query: 301 FSLIEGIASVDKAA 314
            SLI+G+    K +
Sbjct: 375 NSLIDGLCKSGKIS 388



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 140/286 (48%), Gaps = 35/286 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  + PD YT+   V G CKEGR++EA  +L  M + G+ P  VTY +L+DGYC    
Sbjct: 257 MISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQ 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  + M + G+     +YN++I+     +K+ EA ++ KEM  K I+PD +TYN 
Sbjct: 317 VNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNS 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG----------------------------------- 145
           LI+G C+ G    A  L DEM  +G                                   
Sbjct: 377 LIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 436

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           IQP M TYT LI  L K  R+ +A  +FE+ L KG    +  +  +I G C N   ++A 
Sbjct: 437 IQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKAL 496

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           +LL +M+     P+  TY  ++     + + + A +LL +M  RG+
Sbjct: 497 ALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGL 542



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 96/182 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD  TY S + G+CK G++  A +++++M + G+    +TYN+++D  C    
Sbjct: 362 MHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQ 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   +M  +GI P   TY +LI  L    ++ +A ++ +++  KG      TY +
Sbjct: 422 VDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTV 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+C      KA +L  +M   G  P   TY  +I  L +++    A++L    +A+G
Sbjct: 482 MIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG 541

Query: 181 ML 182
           +L
Sbjct: 542 LL 543



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 71/197 (36%), Gaps = 63/197 (31%)

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN------------------ 224
           P I  F  ++         + A SL +EM+   +  D VT+N                  
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 225 -----------------TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF--------- 258
                            TL+ G C +G++ +A    D++   G   + + +         
Sbjct: 114 FANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK 173

Query: 259 -------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
                               P  + YN +I  +CK +  + A +L  EMVSKGI+PD  T
Sbjct: 174 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 233

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G   + K  ++
Sbjct: 234 YSALISGFCILGKLNDA 250


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 170/332 (51%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRGV PD  T+ + + G  +EG +E A R+  +M E G   T VT N LI+GYC  G 
Sbjct: 115 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 174

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  +  + +  G  P   TYN  ++ L     +  A  ++  M ++G  PD  TYNI
Sbjct: 175 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 234

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ G  ++A  + ++M+ +G  P + T+ +LI  L   NR+ EA  L      KG
Sbjct: 235 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 294

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN LI+  C  G+   A  L +EM      PDEVTYNTL+   C  GK+ +A 
Sbjct: 295 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 354

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL  M+  G     I++N                               +T+N LI GL
Sbjct: 355 DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 414

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           CK+++ D A EL+ +M+S+G+ P++ TY S++
Sbjct: 415 CKDKKIDDAFELINQMISEGLQPNNITYNSIL 446



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 168/309 (54%), Gaps = 7/309 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY +FV+G+C+   +  A ++++ M + G  P   TYN +++  C  G LE A
Sbjct: 189 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 248

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++MV +G +P  +T+N LI  L    ++ EA D+ +++  KG+ PD  T+NILIN 
Sbjct: 249 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 308

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   A  L +EM + G  P  +TY +LI  L    ++ +A  L ++  + G    
Sbjct: 309 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 368

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +N +IDG C    IE A  +  +MD   +  + +T+NTL+ G C+  K+++A  L++
Sbjct: 369 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 428

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G++P++I       TYN+++   CK  +   A ++L  M + G   D  TY +LI
Sbjct: 429 QMISEGLQPNNI-------TYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 481

Query: 305 EGIASVDKA 313
            G+    + 
Sbjct: 482 NGLCKAGRT 490



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 173/349 (49%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++PD  T+ + +  +C+  ++  A  MLE+M   G+ P   T+ TL+ G+  +G+
Sbjct: 80  MGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGS 139

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   +  M++ G   T  T N+LI+      ++ +A   +++    G  PD ITYN 
Sbjct: 140 IEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNT 199

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +NG C+  +   A  + D M+ +G  P + TY  ++  L K  ++ EA  +    + +G
Sbjct: 200 FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG 259

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPDI  FN LI   CT   +E A  L +++    V PD  T+N L++  C+ G    A 
Sbjct: 260 CLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLAL 319

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
           RL ++MK  G  PD +++N                             + +TYN +I GL
Sbjct: 320 RLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 379

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAESSN 318
           CK    + AEE+  +M  +GI+ +  T+ +LI+G+     +D A E  N
Sbjct: 380 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 428



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 160/306 (52%), Gaps = 10/306 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD YT+   ++ +CK G    A R+ E+MK +G  P  VTYNTLID  C+ G L  
Sbjct: 293 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK 352

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M   G   +  TYN +I  L  + ++ EA+++  +M  +GI  ++IT+N LI+
Sbjct: 353 ALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 412

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+      AF L ++MI +G+QP  +TY S++    KQ  + +A  + E   A G   
Sbjct: 413 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 472

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +  LI+G C  G  + A  +L+ M    + P    YN ++    R+  + +A  L 
Sbjct: 473 DVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLF 532

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYF 301
            +M   G  PD        LTY  + +GLC+   G + E  + + EMV KG  P+ +++ 
Sbjct: 533 REMAEVGEPPDA-------LTYKIVFRGLCRGG-GPIKEAFDFMLEMVDKGFIPEFSSFR 584

Query: 302 SLIEGI 307
            L EG+
Sbjct: 585 MLAEGL 590



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+Q D+  Y   ++ + +  +++    +  +M   G+ P  VT+NTL+   C    +  A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM  +G+ P  +T+  L+   + E  +  A  +   M E G     +T N+LING
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G  + A     + I  G +P  +TY + +  L + + +  A ++ +  + +G  PD
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 228

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +++  C NG +E A  +L +M      PD  T+NTL+   C   ++EEA  L  
Sbjct: 229 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 288

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           Q+  +G+ PD         T+N LI  LCK  +  LA  L  EM + G TPD+ TY +LI
Sbjct: 289 QVTVKGVSPD-------VYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI 341

Query: 305 EGIASVDKAAES 316
           + + S+ K  ++
Sbjct: 342 DNLCSLGKLGKA 353



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 140/259 (54%), Gaps = 1/259 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY + +  +C  G+L +A  +L+ M+  G   + +TYNT+IDG C K  
Sbjct: 325 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 384

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D+M  QGI   A T+N LI  L  ++K+ +A +++ +M  +G+ P++ITYN 
Sbjct: 385 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 444

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ G+ KKA  + + M   G +  ++TY +LI  L K  R   A ++      KG
Sbjct: 445 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 504

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M P    +N ++       NI  A SL +EM  +   PD +TY  +  G CR  G ++EA
Sbjct: 505 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEA 564

Query: 240 RRLLDQMKRRGIKPDHISF 258
              + +M  +G  P+  SF
Sbjct: 565 FDFMLEMVDKGFIPEFSSF 583



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D  TYG+ ++G+CK GR + A ++L  M+  G+ PT   YN ++     + N
Sbjct: 465 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 524

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYN 119
           +  A S   EM + G  P A TY ++   L      + EA D + EM +KG +P+  ++ 
Sbjct: 525 IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFR 584

Query: 120 ILINGYCRCG 129
           +L  G    G
Sbjct: 585 MLAEGLLNLG 594


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 162/306 (52%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           + G   D +TY + V  + K  +++EA  ++E++  NG  PT  TYN L++G C  G LE
Sbjct: 27  TNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLE 86

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     ++V  G  P   TY  LI  L  +++  EA  + KEM  +G+  D++ Y  LI
Sbjct: 87  EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALI 146

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G  + G   +A S++  M  +G  P ++T +++I  L K  R+  A ++F++  A+G+ 
Sbjct: 147 RGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLA 206

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+ V+++ALI G C    ++ A  +L +M +    PD +TYN L+ G C+ G V  AR  
Sbjct: 207 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAF 266

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M   G KPD         TYN LI G CK    D A  +  +M S   +P+  TY +
Sbjct: 267 FDEMLEAGCKPD-------VYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGT 319

Query: 303 LIEGIA 308
           LI G+ 
Sbjct: 320 LISGLC 325



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 157/297 (52%), Gaps = 7/297 (2%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           T+   ++G+ K G L +A  + ++   NG      TY T++D       ++ A +  +++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
              G  PT +TYN L++ L    ++ EA D+L+++ + G  PD +TY  LI+G  +   +
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A+ L  EM  +G+    + YT+LI  L +  ++ +A  +++   ++G +PD+V  + +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           IDG C  G I  A  + K M+   + P+EV Y+ L+HG C+  K++ A  +L QMK+   
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            PD I       TYN LI GLCK+ +   A     EM+  G  PD  TY  LI G  
Sbjct: 241 TPDTI-------TYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFC 290



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 154/315 (48%), Gaps = 9/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG+  D+  Y + + G+ + G++ +AS + + M   G VP  VT +T+IDG C  G 
Sbjct: 130 MASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGR 189

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +G+ P    Y+ LIH L   RKM  A +ML +M +    PD+ITYNI
Sbjct: 190 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 249

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   A +  DEM+  G +P + TY  LI    K      A  +F++  +  
Sbjct: 250 LIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR 309

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +  LI G C    + +A    + M      PD   Y++L+ G C+ GK+E   
Sbjct: 310 CSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGC 369

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M+R G+         TRL ++     LCK    D A  L   +  +G+ P    Y
Sbjct: 370 MLFDEMERSGVANSQ---TRTRLIFH-----LCKANRVDEAVSLFNAIRKEGM-PHPYAY 420

Query: 301 FSLIEGIASVDKAAE 315
            S+I  +    K  E
Sbjct: 421 NSIISALIKSGKVNE 435



 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 148/328 (45%), Gaps = 42/328 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + G  P   TY + ++G+CK GRLEEA  +L ++ +NG  P  VTY +LIDG   K  
Sbjct: 60  ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKR 119

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM  +G+      Y  LI  LL   K+ +A  + K M  +G VPD +T + 
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM-------------- 166
           +I+G C+ G    A  +   M  +G+ P  + Y++LI  L K  +M              
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 239

Query: 167 ---------------------IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                  A   F+  L  G  PD+  +N LI G C  GN + A 
Sbjct: 240 CTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 299

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +  +M   +  P+ VTY TL+ G C++ ++ +A      MK RG  PD          Y
Sbjct: 300 GVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDS-------FVY 352

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGI 293
           ++L+ GLCK+ + +    L  EM   G+
Sbjct: 353 SSLVDGLCKSGKLEGGCMLFDEMERSGV 380



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 128/279 (45%), Gaps = 33/279 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD  T  + + G+CK GR+  A R+ + M+  GL P  V Y+ LI G C    
Sbjct: 165 MTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 224

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M K    P   TYN+LI  L     +  A     EM E G  PD  TYNI
Sbjct: 225 MDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNI 284

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ GN   A  + D+M      P ++TY +LI  L K+ ++ +A   +++   +G
Sbjct: 285 LISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERG 344

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH----------------------- 217
             PD  ++++L+DG C +G +E    L  EM+R  V                        
Sbjct: 345 CPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVS 404

Query: 218 ----------PDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
                     P    YN+++    + GKV E + +  +M
Sbjct: 405 LFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 7/167 (4%)

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           T++ LI  L K   +I+A  L +     G   DI  +  ++D    N  I+ A +L++++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                 P   TYN L++G C+ G++EEA  LL ++   G  PD +       TY +LI G
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV-------TYTSLIDG 113

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           L K +    A +L +EM S+G+  D   Y +LI G+    K  ++S+
Sbjct: 114 LGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASS 160


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 9/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   + Y Y   + G+C+     +A  +L +M++N L+P  V+YNT+I G+C    
Sbjct: 133 MLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKE 192

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    +EM   G   +  T+ +LI       KM EA  +LKEM  KG+  D I Y  
Sbjct: 193 LEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTS 252

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C CG   +  +L DE++ +G  P  +TY +LI    K  R+ EA ++FE  + +G
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERG 312

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +  LIDG C  G  + A  LL  M +    P+ VTYN +++  C+   V +A 
Sbjct: 313 VRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADAL 372

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV--SKGITPDDN 298
            +++ MK+R  +PD+I       TYN+L+ GLC   + D A +LL  M+  S    PD  
Sbjct: 373 EIVELMKKRRTRPDNI-------TYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 299 TYFSLIEGIA 308
           ++ +LI G+ 
Sbjct: 426 SFNALIHGLC 435



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 153/299 (51%), Gaps = 11/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNK 58
           MK R  +PD+ TY S + G+C +G L+EAS++L  M ++     P  +++N LI G C  
Sbjct: 378 MKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKG 437

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
             L  A    D +V++       T N+L++  L    + +A ++ K++    IVP+S TY
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTY 497

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             +I+G+C+ G    A  L  +M    + P++  Y  L+  L K+  + +A +LFE    
Sbjct: 498 TTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQR 557

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
               PD++ FN +IDG    G+I+ A SLL  M    + PD  TY+ L++   + G ++E
Sbjct: 558 DDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDE 617

Query: 239 ARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           A    D+M   G +PD HI         +++++      E D   E ++++V K +  D
Sbjct: 618 AISFFDKMIDSGFEPDAHIC--------DSVLKYCISQGETDKLTEFVKKLVDKDVVLD 668



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 7/289 (2%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A  +L  M + G       YN L+ G C       A S   EM +  +MP   +YN +I 
Sbjct: 126 AHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIR 185

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                +++ +A  +  EM   G     +T+ ILI+ +C+ G   +A  L  EM HKG++ 
Sbjct: 186 GFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEA 245

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
            ++ YTSLI        +     LF+  L +G  P  + +N LI G C  G ++ A  + 
Sbjct: 246 DLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIF 305

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           + M    V P+  TY  L+ G C  GK +EA +LL+ M ++  +P+ +       TYN +
Sbjct: 306 EFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVV-------TYNII 358

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           I  LCK+     A E++  M  +   PD+ TY SL+ G+ +     E+S
Sbjct: 359 INKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEAS 407



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 9/212 (4%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+S TY + + G CK G L  A  +L +M+ + L P+   YN L+   C KG L+ A+
Sbjct: 490 IVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAW 549

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +EM +    P   ++N++I   L    +  A+ +L  M   G+ PD  TY+ LIN +
Sbjct: 550 RLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRF 609

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + G   +A S  D+MI  G +P      S++     Q    E D+L E F+ K +  D+
Sbjct: 610 LKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQG---ETDKLTE-FVKKLVDKDV 665

Query: 186 VMFNAL----IDGHC-TNGNIERAFSLLKEMD 212
           V+   L    +D  C ++GN++ A  LL+  D
Sbjct: 666 VLDKELTCTVMDYMCSSSGNMDIAKRLLRVAD 697


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 165/304 (54%), Gaps = 8/304 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD + Y + +SG CK  R+E A  +L++MK  G  P  VT+N +I  +C KG +++A  
Sbjct: 41  KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALK 100

Query: 67  FRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
             +E++K     PT  TY +LI   ++E  + EA  +L EM  +G+ PD+ TYN++  G 
Sbjct: 101 VFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGL 160

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G   +AF     +  +G +P ++TY  L+  L  Q +  E ++      ++G  P++
Sbjct: 161 CKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNV 220

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V ++ LI   C +G IE + +L+K M    + PD   Y+ L+   CR+GK++ A   LD 
Sbjct: 221 VTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDC 280

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M   G  PD ++       YN ++  LCKN  GD A E+  ++   G  P+ ++Y +++ 
Sbjct: 281 MICDGFLPDIVN-------YNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLS 333

Query: 306 GIAS 309
            + S
Sbjct: 334 ALWS 337



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 168/323 (52%), Gaps = 12/323 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG++PD++TY     G+CKEG+++ A   +  +   G  P  +TYN L+    N+G 
Sbjct: 141 MLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGK 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +    +  E+  +G  P   TY++LI  L  + K+ E+ +++K M EKG+ PD+  Y+ 
Sbjct: 201 WDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDP 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR G    A    D MI  G  P ++ Y +++  L K      A ++F      G
Sbjct: 261 LIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVG 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  +N ++    ++G+  RA  ++ +M    + PD +TYN+L+   CR G V+EA 
Sbjct: 321 CPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAI 380

Query: 241 RLL-DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            LL D +  R        F P  ++Y  ++ GLCK    D A E+L  M+  G  P++ T
Sbjct: 381 GLLADMLSGR--------FQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETT 432

Query: 300 YFSLIEGI---ASVDKAAESSNS 319
           Y  LIEGI    S  +A E +NS
Sbjct: 433 YTLLIEGIGFSGSRTQAMELANS 455



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 126/244 (51%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRG +P+  TY   +S +C++G++EE+  +++ MKE GL P A  Y+ LI  +C +G L+
Sbjct: 213 SRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLD 272

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           MA  F D M+  G +P    YN ++  L        A ++  ++ E G  P+  +YN ++
Sbjct: 273 MAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTML 332

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +     G+  +A  +  +M+ KGI P ++TY SLI  L +   + EA  L  + L+    
Sbjct: 333 SALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQ 392

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+IV +  ++ G C    I+ A  +L  M      P+E TY  L+ G    G   +A  L
Sbjct: 393 PNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMEL 452

Query: 243 LDQM 246
            + +
Sbjct: 453 ANSL 456



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 13/251 (5%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG--EKGIVPDSITYNILINGYCRC 128
           MV +   P       LI      R +   D   + MG  EK   PD   YN +I+G+C+ 
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNI---DKATRVMGILEKHGKPDVFAYNAVISGFCKA 57

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-KGMLPDIVM 187
              + A ++ D M  KG  P ++T+  +I     + ++  A ++FE  L      P ++ 
Sbjct: 58  NRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLIT 117

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI+ +   G I+ A  LL EM    + PD  TYN +  G C++GKV+ A   +  + 
Sbjct: 118 YTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLN 177

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            RG KPD I       TYN L++ L    + D  E+ + E+ S+G  P+  TY  LI  +
Sbjct: 178 SRGCKPDVI-------TYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSL 230

Query: 308 ASVDKAAESSN 318
               K  ES N
Sbjct: 231 CRDGKIEESVN 241


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 166/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV+P   TY S + G CK+G ++EA ++  +M   G  P  VTY TL+ GY  K +
Sbjct: 427 MKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKD 486

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A++  DEM + G+     TYN+LI+ + M  ++ E D MLK    +G +P  +TYN 
Sbjct: 487 FDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNS 546

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G    AF+++ +M  KG+ P ++TYTS I    +      A ++  +   +G
Sbjct: 547 IINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRG 606

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +NALI+G C  GN+  A  LL  + +  + P+ V YN+L+ G      ++E  
Sbjct: 607 LQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVS 666

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +  + M + GI  D         TY  LI G  K+     A EL  EM++KG  PD  T+
Sbjct: 667 KFYESMIKGGIVADTS-------TYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTF 719

Query: 301 FSLIEGI 307
            +L  G+
Sbjct: 720 TALTHGL 726



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 157/308 (50%), Gaps = 13/308 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  + YTY   ++G+C   R+ E   ML+     G +PT +TYN++I+G+   G 
Sbjct: 497 MKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGM 556

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF+   +M ++G+ P   TY   I           A  ML ++  +G+ PD + YN 
Sbjct: 557 MGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNA 616

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+ GN   A  L   ++  G+ P  + Y SLI      N M E  + +E+ +  G
Sbjct: 617 LINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGG 676

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D   +  LIDG   +GN+  A  L  EM      PD  T+  L HG CR G ++ A+
Sbjct: 677 IVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAK 736

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGL---CKNQEGDLAEELLREMVSKGITPDD 297
           +LL++M+R  ++P+          YN LI G    CK QE   A  L  EM++ GI PDD
Sbjct: 737 KLLEEMRRLDVRPN-------VFIYNMLINGYLRDCKLQE---AFRLHDEMLNMGIQPDD 786

Query: 298 NTYFSLIE 305
            TY  L+ 
Sbjct: 787 TTYDILVS 794



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 174/319 (54%), Gaps = 12/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P ++     + G+  + R ++A  + E+M ++GL P   TYN LI  +C    
Sbjct: 358 MTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAHK 416

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +  D M K G+ P+ +TYN L+     +  M EA  +  EM  +G  P+ +TY  
Sbjct: 417 LREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYIT 476

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY    +   A++L DEM   G+     TY  LI  +   +R+ E D + ++F+++G
Sbjct: 477 LMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEG 536

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P ++ +N++I+G    G +  AF++ ++M    + P+ +TY + + G CR G  + A 
Sbjct: 537 FIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMAL 596

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
           ++L+ ++RRG++PD ++       YNALI G C  QEG++  A +LL  ++  G+ P+  
Sbjct: 597 KMLNDVRRRGLQPDIVA-------YNALINGFC--QEGNMSHALQLLVILLKDGLAPNTV 647

Query: 299 TYFSLIEGIASVDKAAESS 317
            Y SLI G  +++   E S
Sbjct: 648 VYNSLITGYKNLNMMKEVS 666



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 152/315 (48%), Gaps = 8/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    + PD   Y   ++ +CK G    A RML +MKE G      TY T++D     G 
Sbjct: 218 MPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGR 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM   G          L+    + +++  A ++ KE  + GIVP  + Y +
Sbjct: 278 MEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGV 337

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G  + G  +KA+ L  +M  +G+ P+    + ++  L    R  +A  LFE     G
Sbjct: 338 LIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSG 397

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD+  +N LI  HC    +  A +L   M +  V P   TYN+L+ G C++G ++EA 
Sbjct: 398 -LPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAV 456

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G KP+ +       TY  L++G    ++ D A  LL EM   G++ +D TY
Sbjct: 457 KLYSEMPMEGFKPNVV-------TYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTY 509

Query: 301 FSLIEGIASVDKAAE 315
             LI GI  VD+  E
Sbjct: 510 NVLINGICMVDRVCE 524



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 134/347 (38%), Gaps = 76/347 (21%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A+     M   G+VP   +   L+       + + A +   EM  +G    A  ++ L+ 
Sbjct: 141 ATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMS 200

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
             L E    +A  +  EM    I PD   Y + I   C+ G+  +A  +  EM   G   
Sbjct: 201 ACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDT 260

Query: 149 TMLTYTSLIFVLSKQNRMIEADQ-----------------------------------LF 173
              TY +++ VL K  RM EA +                                   LF
Sbjct: 261 CDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLF 320

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP--------------- 218
           +  L  G++P  VM+  LI G    G  ++A+ L ++M    + P               
Sbjct: 321 KETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLND 380

Query: 219 -------------------DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
                              D  TYN L+H  C+  K+ EA  L D+MK+ G+KP   S N
Sbjct: 381 RRWKDAVCLFEEMADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKP---SIN 437

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               TYN+L+ G CK    D A +L  EM  +G  P+  TY +L+ G
Sbjct: 438 ----TYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRG 480



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD++T+ +   G+C+ G ++ A ++LE+M+   + P    YN LI+GY     
Sbjct: 707 MMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCK 766

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           L+ AF   DEM+  GI P  +TY++L+      +K +EAD+
Sbjct: 767 LQEAFRLHDEMLNMGIQPDDTTYDILV-----SKKFLEADN 802



 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 42/212 (19%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A   +  M+ +G+ P + + T L+   ++ +   +A  LF     +G   D  MF+AL+ 
Sbjct: 141 ATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMS 200

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDE--------------------------------- 220
                G  E A  L  EM   ++ PD+                                 
Sbjct: 201 ACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDT 260

Query: 221 --VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
              TY T++    + G++EEA R+ D+M+  G K D I           L++G C  QE 
Sbjct: 261 CDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVI-------VATTLMRGYCLRQEV 313

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
             A  L +E +  GI P    Y  LI G   V
Sbjct: 314 GNALNLFKETLKDGIVPTKVMYGVLIRGCDQV 345


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 11/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  T+ + ++G+C EGR+ +A  ++++M E G  P    Y T+I+G C  G+
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A +   +M +  I      YN +I  L  +   + A ++  EM +KGI PD ITY+ 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +CR G    A  L  +MI + I P ++T+++LI  L K+ ++ EA++++ + L +G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + +N++IDG C    +  A  +L  M      PD VT++TL++G C+  +V+   
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGM 236

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M RRGI  + +       TY  LI G C+  + D A++LL  M+S G+ P+  T+
Sbjct: 237 EIFCEMHRRGIVANTV-------TYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITF 289

Query: 301 FSLIEGIAS 309
            S++  + S
Sbjct: 290 QSMLASLCS 298



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 160/295 (54%), Gaps = 11/295 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP    YG+ ++G+CK G  E A  +L +M+E  +    V YN +ID  C  G+
Sbjct: 36  MVEEGHQP----YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGH 91

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM  +GI P   TY+ +I       +  +A+ +L++M E+ I PD +T++ 
Sbjct: 92  HIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSA 151

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN   + G   +A  ++ +M+ +GI PT +TY S+I    KQ+R+ +A ++ ++  +K 
Sbjct: 152 LINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKS 211

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V F+ LI+G+C    ++    +  EM R  +  + VTY TL+HG C+ G ++ A+
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            LL+ M   G+ P++I       T+ +++  LC  +E   A  +L ++    + P
Sbjct: 272 DLLNVMISSGVAPNYI-------TFQSMLASLCSKKELRKAFAILEDLQKSEVCP 319



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 144/275 (52%), Gaps = 11/275 (4%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           M E G  P  VT+ TL++G C +G +  A +  D MV++G  P    Y  +I+ L     
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
              A ++L +M E  I    + YN +I+  C+ G+   A +L  EM  KGI P ++TY+ 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           +I    +  R  +A+QL  + + + + PD+V F+ALI+     G +  A  +  +M R  
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           + P  +TYN+++ G C+Q ++ +A+R+LD M  +   PD +       T++ LI G CK 
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVV-------TFSTLINGYCKA 229

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           +  D   E+  EM  +GI  +  TY +LI G   V
Sbjct: 230 KRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQV 264



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 99/186 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+ + ++ + KEG++ EA  +   M   G+ PT +TYN++IDG+C +  
Sbjct: 137 MIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDR 196

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D M  +   P   T++ LI+     +++    ++  EM  +GIV +++TY  
Sbjct: 197 LNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT 256

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G+   A  L + MI  G+ P  +T+ S++  L  +  + +A  + E+     
Sbjct: 257 LIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSE 316

Query: 181 MLPDIV 186
           + P IV
Sbjct: 317 VCPRIV 322



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 11/207 (5%)

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M E G  PD +T+  L+NG C  G   +A +L D M+ +G QP    Y ++I  L K   
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
              A  L        +   +V++NA+ID  C +G+   A +L  EM    + PD +TY+ 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           ++   CR G+  +A +LL  M  R I PD +       T++ALI  L K  +   AEE+ 
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVV-------TFSALINALVKEGKVSEAEEIY 169

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDK 312
            +M+ +GI P   TY S+I+G    D+
Sbjct: 170 GDMLRRGIFPTTITYNSMIDGFCKQDR 196



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 11/176 (6%)

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+  G +P ++T+T+L+  L  + R+++A  L +  + +G  P    +  +I+G C  G+
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A +LL +M+   +    V YN ++   C+ G    A+ L  +M  +GI PD I    
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVI---- 112

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              TY+ +I   C++     AE+LLR+M+ + I PD  T+ +LI  +    K +E+
Sbjct: 113 ---TYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEA 165


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 174/312 (55%), Gaps = 10/312 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S  + PD +TY + ++G+CKE R+EEA+ + ++M E GLVP  VT+ TLIDG C  G 
Sbjct: 287 MESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGK 346

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A    + M  +GI P   TYN LI+ L  +  + EA  +L EM   G  PD IT+  
Sbjct: 347 IDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTT 406

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G+   A  + D M+ +GI+   + +T+LI  L +  R+ +A+++ ++ L+ G
Sbjct: 407 LMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAG 466

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +  +ID  C  G+++    LLKEM R    P  VTYN LM+G C+QG+++ A+
Sbjct: 467 HKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAK 526

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M    + P+ I       T+N L+ G CK+      +    E   KG+  D  +Y
Sbjct: 527 MLLHAMLNMEVVPNDI-------TFNILLDGHCKHGSSVDFKIFNGE---KGLVSDYASY 576

Query: 301 FSLIEGIASVDK 312
            +L+     + K
Sbjct: 577 TALVNESIKISK 588



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 166/330 (50%), Gaps = 28/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+ Y +   + G CK G +  A  + +++   GL P+ V++NTLI GYC   N+E  
Sbjct: 221 GYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEG 280

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M  + I P   TY+ LI+ L  E ++ EA+ +  EM E G+VP+ +T+  LI+G
Sbjct: 281 FVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDG 340

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A    + M  +GI+P ++TY +LI  L +   + EA +L    +  G  PD
Sbjct: 341 QCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPD 400

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + F  L+DG C +G+++ A  +   M    +  D+V +  L+ G CR G+V +A R+L 
Sbjct: 401 KITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLK 460

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M   G KPD  ++                             P  +TYNAL+ G CK  
Sbjct: 461 DMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQG 520

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   A+ LL  M++  + P+D T+  L++G
Sbjct: 521 QMKNAKMLLHAMLNMEVVPNDITFNILLDG 550



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 138/245 (56%), Gaps = 7/245 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
            + F  E++  G  P    +N+L+H       ++ A  +  E+  +G+ P  +++N LI+
Sbjct: 210 CWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLIS 269

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYCR  N ++ F L   M  + I P + TY++LI  L K++R+ EA+ LF+     G++P
Sbjct: 270 GYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVP 329

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + V F  LIDG C +G I+ A    + M    + PD +TYN L++G CR G ++EAR+LL
Sbjct: 330 NGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLL 389

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   G KPD       ++T+  L+ G CK+ + D A E+   MV +GI  DD  + +L
Sbjct: 390 NEMIGNGFKPD-------KITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTAL 442

Query: 304 IEGIA 308
           I G+ 
Sbjct: 443 ISGLC 447



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 15/287 (5%)

Query: 19  GMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP 78
           G C E  LE        + + G  P    +N L+ G+C  G++  A    DE+ ++G+ P
Sbjct: 208 GHCWEFYLE--------VLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRP 259

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
           +  ++N LI      + + E   +   M  + I PD  TY+ LING C+    ++A  L 
Sbjct: 260 SVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLF 319

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           DEM   G+ P  +T+T+LI    K  ++  A + FE    +G+ PD++ +NALI+G C +
Sbjct: 320 DEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRD 379

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
           G+++ A  LL EM      PD++T+ TLM G C+ G ++ A  + D+M   GI+ D ++F
Sbjct: 380 GDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAF 439

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                   ALI GLC++     AE +L++M+S G  PDD TY  +I+
Sbjct: 440 -------TALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVID 479



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P+   +N LMHG C+ G V  AR + D++ RRG++P  +SFN        LI G C+++ 
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFN-------TLISGYCRSKN 276

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            +    L   M S+ I+PD  TY +LI G+    +  E++
Sbjct: 277 VEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEAN 316


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 173/351 (49%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK+ +L EA  +  +M   G+ P   TYN+LI   CN   
Sbjct: 152 MVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCE 211

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-- 118
            +   +  +EMVK  IMP   + N+++  L  E K+ EA D++  M + G+ PD +TY  
Sbjct: 212 WKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAA 271

Query: 119 ---------------------------------NILINGYCRCGNAKKAFSLHDEMIHKG 145
                                            N LINGYC+     KA  L +EM  + 
Sbjct: 272 LMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQE 331

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  +TY++LI  L    R+ +A  LF   +A G +P++V ++ L+D  C N  +  A 
Sbjct: 332 LIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAM 391

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +LLK ++   + PD   YN  + G CR G +E AR L   +  RG++PD         T+
Sbjct: 392 ALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPD-------VWTH 444

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N +I+GLCK    D A +L REM   G   +  TY ++ +G+   +K + +
Sbjct: 445 NIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRA 495



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 171/306 (55%), Gaps = 11/306 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ T+ + V G+C  G++ EA  + ++M   G  P  VTY TL++G C    L  A
Sbjct: 121 GHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEA 180

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            +   EM+ +GI P   TYN LIH L  L E K V    +L EM +  I+P+ ++ NI++
Sbjct: 181 LNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTT--LLNEMVKSKIMPNVVSLNIVV 238

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G   +A  + D MI  G++P ++TY +L+     ++ M EA ++F+  +  G +
Sbjct: 239 DALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCV 298

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            ++V +N LI+G+C    I++A  L +EM R ++ P+ +TY+TL+HG C  G++++A  L
Sbjct: 299 CNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIAL 358

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++M   G  P+ +       TY+ L+  LCKN     A  LL+ +    + PD   Y  
Sbjct: 359 FNEMVACGQIPNLV-------TYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNI 411

Query: 303 LIEGIA 308
            I+G+ 
Sbjct: 412 AIDGMC 417



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 165/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++  C   R++ A  +L ++ + G  P   T+ TL+ G C  G 
Sbjct: 82  MDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGK 141

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+MV +G  P   TY  L++ L  +R++ EA ++  EM  KGI PD  TYN 
Sbjct: 142 IGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNS 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C     K   +L +EM+   I P +++   ++  L K+ ++ EA  + +  +  G
Sbjct: 202 LIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGG 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V + AL+DGHC    ++ A  +   M R     + V+YNTL++G C+  ++++A 
Sbjct: 262 VEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAM 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M R+ + P+        +TY+ LI GLC       A  L  EMV+ G  P+  TY
Sbjct: 322 YLFEEMCRQELIPN-------TMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTY 374

Query: 301 FSLIEGIASVDKAAES 316
             L++ +    + AE+
Sbjct: 375 SILLDYLCKNHRLAEA 390



 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 150/309 (48%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P  + +   ++ + K         + ++M   G+ P   T   +I+ +C+   ++ A S 
Sbjct: 54  PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSV 113

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +T+  L+  L +  K+ EA D+  +M  +G  P+ +TY  L+NG C+
Sbjct: 114 LAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCK 173

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                +A +L  EMI KGI P + TY SLI  L           L    +   ++P++V 
Sbjct: 174 DRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVS 233

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            N ++D  C  G +  A  ++  M +  V PD VTY  LM G C + +++EA ++ D M 
Sbjct: 234 LNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMV 293

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           R G   + +S       YN LI G CK Q  D A  L  EM  + + P+  TY +LI G+
Sbjct: 294 RNGCVCNVVS-------YNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGL 346

Query: 308 ASVDKAAES 316
             V +  ++
Sbjct: 347 CHVGRLQDA 355



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 42/305 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PD  TY + + G C    ++EA ++ + M  NG V   V+YNTLI+GYC    
Sbjct: 257 MIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQR 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM +Q ++P   TY+ LIH L    ++ +A  +  EM   G +P+ +TY+I
Sbjct: 317 IDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSI 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C                                   K +R+ EA  L +      
Sbjct: 377 LLDYLC-----------------------------------KNHRLAEAMALLKAIEGSN 401

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+ ++N  IDG C  G++E A  L   +    + PD  T+N ++ G C++G ++EA 
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEAS 461

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G   +         TYN + QGL +N +   A +LL EM+++G + D +T 
Sbjct: 462 KLFREMDENGCLRNGC-------TYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTT 514

Query: 301 FSLIE 305
             L++
Sbjct: 515 ALLVK 519



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 123/248 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   +  +Y + ++G CK  R+++A  + E+M    L+P  +TY+TLI G C+ G 
Sbjct: 292 MVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGR 351

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +  +EMV  G +P   TY++L+  L    ++ EA  +LK +    + PD   YNI
Sbjct: 352 LQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNI 411

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I+G CR G+ + A  L   +  +G+QP + T+  +I  L K+  + EA +LF      G
Sbjct: 412 AIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENG 471

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            L +   +N +  G   N    RA  LL+EM       D  T   L+      G  +  +
Sbjct: 472 CLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSVK 531

Query: 241 RLLDQMKR 248
           ++L +  R
Sbjct: 532 QILCEFMR 539


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 171/317 (53%), Gaps = 11/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P+  TY S ++ +C  GR  +ASR+L  M E  + P  VT+N LID +  +G 
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGK 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM+++ I P   TYNLLI+   M  ++ EA  M K M  K  +P+  TYN 
Sbjct: 344 LVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNT 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+C   +    L  EM  +G+    +TYT++I    +      A  +F+  ++  
Sbjct: 404 LINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI+ ++ L+ G C+ G ++ A  + K + + ++  +   YNT++ G C+ GKV EA 
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +    IKPD +       TYN +I GLC  +    A++L R+M   G  P+  TY
Sbjct: 524 DLFCSL---SIKPDVV-------TYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTY 573

Query: 301 FSLIEG-IASVDKAAES 316
            +LI   +   D+AA +
Sbjct: 574 NTLIRANLRDCDRAASA 590



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 171/315 (54%), Gaps = 7/315 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  D YTY  F++  C+  +L  A  +L +M + G  P  VT ++L++GYC+   
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+  LIH L +  K  EA  ++ +M ++G  PD +TY  
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT 228

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG C+ G+   A +L ++M    I+  ++ + ++I  L K   +  A  LF     KG
Sbjct: 229 VVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKG 288

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N+LI+  C  G    A  LL  M   K++P+ VT+N L+    ++GK+ EA 
Sbjct: 289 IRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAE 348

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L ++M +R I PD I       TYN LI G C +   D A+++ + MVSK   P+  TY
Sbjct: 349 KLHEEMIQRSIDPDTI-------TYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401

Query: 301 FSLIEGIASVDKAAE 315
            +LI G     +  +
Sbjct: 402 NTLINGFCKCKRVED 416



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 168/312 (53%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD++T+ + + G+    +  EA  +++QM + G  P  VTY T+++G C +G+
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A +  ++M    I      +N +I  L   R +  A D+  EM  KGI P+ +TYN 
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNS 298

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G    A  L   M+ K I P ++T+ +LI    K+ +++EA++L E  + + 
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N LI+G C +  ++ A  + K M      P+  TYNTL++G C+  +VE+  
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RG+  + +       TY  +IQG  +  + D A+ + ++MVS  +  D  TY
Sbjct: 419 ELFREMSQRGLVGNTV-------TYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTY 471

Query: 301 FSLIEGIASVDK 312
             L+ G+ S  K
Sbjct: 472 SILLHGLCSYGK 483



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 165/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QPD  TYG+ V+G+CK G ++ A  +L +M+   +    V +NT+ID  C   +
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRH 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E+A     EM  +GI P   TYN LI+ L    +  +A  +L  M EK I P+ +T+N 
Sbjct: 274 VEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA 333

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  LH+EMI + I P  +TY  LI      NR+ EA Q+F+  ++K 
Sbjct: 334 LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKD 393

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+I  +N LI+G C    +E    L +EM +  +  + VTY T++ G  + G  + A+
Sbjct: 394 CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQ 453

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  QM    +  D        +TY+ L+ GLC   + D A  + + +    +  +   Y
Sbjct: 454 MVFKQMVSNRVPTD-------IMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIY 506

Query: 301 FSLIEGIASVDKAAES 316
            ++IEG+    K  E+
Sbjct: 507 NTMIEGMCKAGKVGEA 522



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 156/299 (52%), Gaps = 10/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  T+ + +    KEG+L EA ++ E+M +  + P  +TYN LI+G+C    
Sbjct: 319 MLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNR 378

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      MV +  +P   TYN LI+     +++ +  ++ +EM ++G+V +++TY  
Sbjct: 379 LDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTT 438

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+ + G+   A  +  +M+   +   ++TY+ L+  L    ++  A  +F+      
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  +I ++N +I+G C  G +  A+ L      + + PD VTYNT++ G C +  ++EA 
Sbjct: 499 MELNIFIYNTMIEGMCKAGKVGEAWDLFCS---LSIKPDVVTYNTMISGLCSKRLLQEAD 555

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L  +MK  G  P+         TYN LI+   ++ +   + EL++EM S G   D +T
Sbjct: 556 DLFRKMKEDGTLPNS-------GTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDAST 607



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 148/292 (50%), Gaps = 7/292 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           ++++A  +   M ++   P+ V +N L+         E+  S  ++M   GI     TY+
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           + I+      ++  A  +L +M + G  PD +T + L+NGYC       A +L D+M+  
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P   T+T+LI  L   N+  EA  L +  + +G  PD+V +  +++G C  G+I+ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +LL +M+  ++  + V +NT++   C+   VE A  L  +M+ +GI+P+ +       T
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVV-------T 295

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN+LI  LC       A  LL  M+ K I P+  T+ +LI+      K  E+
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEA 347



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 7/248 (2%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           +MVK    P+   +N L+  +    K      + ++M   GI  D  TY+I IN +CR  
Sbjct: 73  DMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRS 132

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
               A ++  +M+  G +P ++T +SL+       R+ +A  L +  +  G  PD   F 
Sbjct: 133 QLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFT 192

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI G   +     A +L+ +M +    PD VTY T+++G C++G ++ A  LL++M+  
Sbjct: 193 TLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAA 252

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            IK + + FN        +I  LCK +  ++A +L  EM +KGI P+  TY SLI  + +
Sbjct: 253 RIKANVVIFN-------TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCN 305

Query: 310 VDKAAESS 317
             + +++S
Sbjct: 306 YGRWSDAS 313



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           + Y + + GMCK G++ EA  +   +    + P  VTYNT+I G C+K  L+ A     +
Sbjct: 504 FIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRK 560

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           M + G +P + TYN LI   L +     + +++KEM   G V D+ T +++ N
Sbjct: 561 MKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTN 613



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           LS   ++ +A  LF + +     P IV FN L+         E   SL ++M  + +  D
Sbjct: 58  LSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHD 117

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             TY+  ++  CR+ ++  A  +L +M + G +PD +       T ++L+ G C ++   
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIV-------TLSSLLNGYCHSKRIS 170

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A  L+ +MV  G  PD  T+ +LI G+   +KA+E+
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 165/303 (54%), Gaps = 7/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  T+ +FV+G+C+ G ++ A ++L  M + G  P   TY+T+I+  CN G LE A
Sbjct: 296 GFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEA 355

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++MV  G +P  +T+N LI  L  E ++ EA D+ +E+  KG+ P+  T+NILIN 
Sbjct: 356 KGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINA 415

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   A  L +EM   G  P  +TY  LI  L    ++ +A  L +     G    
Sbjct: 416 LCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQS 475

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N +IDG C    IE A  +  +MD   +  + +T+NTL+ G C   ++++A  L+D
Sbjct: 476 TVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVD 535

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G++P+++       TYN+++   CK      A ++L+ M + G   D  TY +LI
Sbjct: 536 QMISEGLQPNNV-------TYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLI 588

Query: 305 EGI 307
            G+
Sbjct: 589 NGL 591



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 166/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P S T    ++G CK GR+ +A   ++Q   +G  P  VT++T ++G C  G+
Sbjct: 257 MSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGH 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M+++G  P   TY+ +I+ L    ++ EA  ++ +M + G +PD+ T+N 
Sbjct: 317 VDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNT 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C     ++A  L  E+  KG+ P + T+  LI  L K      A +LFE   + G
Sbjct: 377 LIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V +N LID  C++G + +A  LLKEM+        VTYNT++ G C++ ++EEA 
Sbjct: 437 CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAE 496

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + DQM   GI  + I       T+N LI GLC  +  D A EL+ +M+S+G+ P++ TY
Sbjct: 497 EVFDQMDVTGIGRNAI-------TFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTY 549

Query: 301 FSLI 304
            S++
Sbjct: 550 NSIL 553



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+ T+ + +  +C E +LEEA  +  ++   GL P   T+N LI+  C  G+
Sbjct: 362 MVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGD 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A    +EM   G  P   TYN+LI  L    K+ +A D+LKEM   G    ++TYN 
Sbjct: 422 PHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNT 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+    ++A  + D+M   GI    +T+ +LI  L    R+ +A +L +  +++G
Sbjct: 482 IIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEG 541

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +N+++  +C  GNI +A  +L+ M       D VTY TL++G C+  + + A 
Sbjct: 542 LQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAAL 601

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M+ +G+KP   ++NP       +IQ L +   G  A  L REM   G  PD  TY
Sbjct: 602 KLLRGMRMKGMKPTPKAYNP-------VIQSLFRGNNGRDALSLFREMTEVGGPPDAFTY 654

Query: 301 FSLIEGI 307
             +  G+
Sbjct: 655 KIVFRGL 661



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 164/318 (51%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  V PD  T+ + + G  +EG +E A R+  +M E G  PT+VT N LI+GYC  G 
Sbjct: 222 MSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGR 281

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  +  + +  G  P   T++  ++ L     +  A  +L  M ++G  PD  TY+ 
Sbjct: 282 VGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYST 341

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN  C  G  ++A  + ++M+  G  P   T+ +LI  L  +N++ EA  L      KG
Sbjct: 342 VINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKG 401

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  FN LI+  C  G+   A  L +EM      PDEVTYN L+   C  GK+ +A 
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKAL 461

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M+  G     +       TYN +I GLCK +  + AEE+  +M   GI  +  T+
Sbjct: 462 DLLKEMEVSGCPQSTV-------TYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITF 514

Query: 301 FSLIEGIAS---VDKAAE 315
            +LI+G+ +   +D AAE
Sbjct: 515 NTLIDGLCNAERIDDAAE 532



 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 153/312 (49%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GVQ ++  Y   ++ + +  +++       +M   G+ P  VT+NT+ID  C       A
Sbjct: 156 GVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTA 215

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM    + P  +T+  L+   + E  +  A  +   M E G  P S+T N+LING
Sbjct: 216 VLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLING 275

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G    A     + I  G +P  +T+++ +  L +   +  A ++    L +G  PD
Sbjct: 276 YCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPD 335

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  ++ +I+  C NG +E A  ++ +M      PD  T+NTL+   C + ++EEA  L  
Sbjct: 336 VYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAR 395

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++  +G+ P+         T+N LI  LCK  +  LA  L  EM S G TPD+ TY  LI
Sbjct: 396 ELTVKGLSPNV-------YTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILI 448

Query: 305 EGIASVDKAAES 316
           + + S  K A++
Sbjct: 449 DNLCSSGKLAKA 460



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 1/259 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G  PD  TY   +  +C  G+L +A  +L++M+ +G   + VTYNT+IDG C +  
Sbjct: 432 MKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRR 491

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D+M   GI   A T+N LI  L    ++ +A +++ +M  +G+ P+++TYN 
Sbjct: 492 IEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNS 551

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ GN  KA  +   M   G +  ++TY +LI  L K  R   A +L      KG
Sbjct: 552 ILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKG 611

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M P    +N +I       N   A SL +EM  +   PD  TY  +  G CR  G ++EA
Sbjct: 612 MKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEA 671

Query: 240 RRLLDQMKRRGIKPDHISF 258
              L +M   G  P+  SF
Sbjct: 672 FDFLVEMADNGFIPEFSSF 690


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 172/363 (47%), Gaps = 63/363 (17%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++   YTY   + G C++G++EEASR+ E+M   G VPT VTYNT++ G C  G +  A
Sbjct: 267 GLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDA 326

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV + +MP   +YN LI+       + EA  +  E+  + + P  +TYN LI+G
Sbjct: 327 RKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDG 386

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF----------- 173
            CR G+   A  L DEMI  G  P + T+T+ +    K   +  A +LF           
Sbjct: 387 LCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPD 446

Query: 174 ------------------------ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
                                   E  LA+G  PD++ +N  IDG    GN++ A  L+K
Sbjct: 447 RFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVK 506

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF----------- 258
           +M    + PD VTY +++H     G + +AR L  +M  +GI P  +++           
Sbjct: 507 KMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRG 566

Query: 259 -----------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
                            +P  +TYNALI GLCK ++ D A     EM +KGI+P+  TY 
Sbjct: 567 RLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYT 626

Query: 302 SLI 304
            LI
Sbjct: 627 ILI 629



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 171/307 (55%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMC-KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M S+G+ PD       +  +  ++  ++ A  +   M E G+ PT VTYNT++D +C KG
Sbjct: 157 MVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKG 216

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A     +M   G  P   TYN+L++ L    +M +A +++++M   G+     TY+
Sbjct: 217 MVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYD 276

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI GYC  G  ++A  L +EM+ +G  PT++TY ++++ L K  R+ +A +L +  + K
Sbjct: 277 PLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNK 336

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++PD+V +N LI G+   GNI  AF L  E+    + P  VTYNTL+ G CR G ++ A
Sbjct: 337 NLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVA 396

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL D+M + G  PD     P   T+   ++G CK     +A+EL  EM+++G+ PD   
Sbjct: 397 MRLKDEMIKHG--PD-----PDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFA 449

Query: 300 YFSLIEG 306
           Y + I G
Sbjct: 450 YITRIVG 456



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 161/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  P+  TY   V+G+   G +E+A  +++ M   GL  +  TY+ LI GYC KG 
Sbjct: 228 MQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQ 287

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM+ +G +PT  TYN +++ L    ++ +A  +L  M  K ++PD ++YN 
Sbjct: 288 IEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNT 347

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY R GN  +AF L  E+ ++ + P+++TY +LI  L +   +  A +L +  +  G
Sbjct: 348 LIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHG 407

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  F   + G C  GN+  A  L  EM    + PD   Y T + G  + G   +A 
Sbjct: 408 PDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAF 467

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + ++M  RG  PD I       TYN  I GL K      A EL+++M+  G+ PD  TY
Sbjct: 468 GMQEEMLARGFPPDLI-------TYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTY 520

Query: 301 FSLIEG 306
            S+I  
Sbjct: 521 TSIIHA 526



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 164/308 (53%), Gaps = 13/308 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ R + P   TY + + G+C+ G L+ A R+ ++M ++G  P   T+ T + G+C  GN
Sbjct: 368 LRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGN 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM---VEADDMLKEMGEKGIVPDSIT 117
           L MA    DEM+ +G+ P    Y   I  ++ E K+    +A  M +EM  +G  PD IT
Sbjct: 428 LPMAKELFDEMLNRGLQPDRFAY---ITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 484

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN+ I+G  + GN K+A  L  +M++ G+ P  +TYTS+I        + +A  LF   L
Sbjct: 485 YNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEML 544

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           +KG+ P +V +  LI  +   G ++ A     EM    VHP+ +TYN L++G C+  K++
Sbjct: 545 SKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMD 604

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A     +M+ +GI P+       + TY  LI   C       A  L ++M+ + I PD 
Sbjct: 605 QAYNFFAEMQAKGISPN-------KYTYTILINENCNLGHWQEALRLYKDMLDREIQPDS 657

Query: 298 NTYFSLIE 305
            T+ SL++
Sbjct: 658 CTHRSLLK 665



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 124/242 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+QPD + Y + + G  K G   +A  M E+M   G  P  +TYN  IDG    GN
Sbjct: 438 MLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGN 497

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     +M+  G++P   TY  +IH  LM   + +A  +  EM  KGI P  +TY +
Sbjct: 498 LKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTV 557

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y   G  K A     EM  KG+ P ++TY +LI  L K  +M +A   F    AKG
Sbjct: 558 LIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKG 617

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +  LI+ +C  G+ + A  L K+M   ++ PD  T+ +L+    +  K+   R
Sbjct: 618 ISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDYKLHVVR 677

Query: 241 RL 242
            L
Sbjct: 678 HL 679



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 107/199 (53%), Gaps = 8/199 (4%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE-ADQLFENFL 177
           ++L+  Y +    +K   +  +M+ KG+ P +     ++ +L  ++  I+ A +++   +
Sbjct: 135 DLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMV 194

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G+ P +V +N ++D  C  G ++ A  LL +M  M   P++VTYN L++G    G++E
Sbjct: 195 ECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEME 254

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A+ L+  M R G++        +  TY+ LI+G C+  + + A  L  EM+S+G  P  
Sbjct: 255 QAKELIQDMLRLGLEV-------SVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTV 307

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY +++ G+    + +++
Sbjct: 308 VTYNTIMYGLCKWGRVSDA 326



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 112/226 (49%), Gaps = 23/226 (10%)

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS------------ 155
           + G     I+Y+++++   R G  + A+ + ++++   ++  ++   S            
Sbjct: 74  QTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLI 133

Query: 156 ---LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG-HCTNGNIERAFSLLKEM 211
              L+++  K++ + +   +F   ++KG+LPD+   N ++      + NI+ A  +   M
Sbjct: 134 LDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVM 193

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
               + P  VTYNT++   C++G V+EA +LL QM+  G  P+ +       TYN L+ G
Sbjct: 194 VECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDV-------TYNVLVNG 246

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           L  + E + A+EL+++M+  G+     TY  LI G     +  E+S
Sbjct: 247 LSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEAS 292


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 173/334 (51%), Gaps = 32/334 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD  TYG+ ++G+CK G    A R+L  M +    P  + YNT+ID  C    +  A
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 309

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           F+   EM+ +GI P   TYN LIH L  L E K V    +L EM    I+P+ + ++ ++
Sbjct: 310 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTT--LLNEMVNSKIMPNVVVFSTVV 367

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G    A  + D MI +G++P ++TYT+L+     ++ M EA ++F+  + KG +
Sbjct: 368 DALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCV 427

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +N LI+G+C    +++A  LL++M    +  D VTYNTL+HG C  G+++ A  L
Sbjct: 428 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 487

Query: 243 LDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCK 274
             +M   G  PD +++                            +   L YN  I G+C+
Sbjct: 488 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 547

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             E + A +L   + SKG+ PD  TY  +I G+ 
Sbjct: 548 AGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLC 581



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 163/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ PD +TY S +  +C     +  + +L +M  + ++P  V ++T++D  C +G 
Sbjct: 316 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGM 375

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    D M+K+G+ P   TY  L+    +  +M EA  +   M  KG VP+  +YNI
Sbjct: 376 IAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNI 435

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L ++M  +G+    +TY +LI  L    R+  A  LF   +A G
Sbjct: 436 LINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 495

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  L+D  C N ++  A  LLK ++   +  D + YN  + G CR G++E AR
Sbjct: 496 QIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAAR 555

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G++PD       R TYN +I GLCK    D A +L R+M   G + D   Y
Sbjct: 556 DLFSNLSSKGLQPD------VR-TYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIY 608

Query: 301 FSLIEG 306
            ++I G
Sbjct: 609 NTIIRG 614



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 164/312 (52%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ T+ + + G+C EG++ EA  + ++    G  P  VTY TL++G C  GN   A
Sbjct: 215 GCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAA 274

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 MV++   P    YN +I  L  +R++ EA ++  EM  KGI PD  TYN LI+ 
Sbjct: 275 IRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHA 334

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     K   +L +EM++  I P ++ +++++  L K+  +  A  + +  + +G+ PD
Sbjct: 335 LCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPD 394

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + AL+DGHC    ++ A  +   M      P+  +YN L++G C+  ++++A  LL+
Sbjct: 395 VVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLE 454

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM  +G+  D +       TYN LI GLC       A  L  EMV+ G  PD  TY  L+
Sbjct: 455 QMSLQGLIADTV-------TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILL 507

Query: 305 EGIASVDKAAES 316
           + +      AE+
Sbjct: 508 DYLCKNHHLAEA 519



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 167/305 (54%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + P+   + + V  +CKEG +  A  +++ M + G+ P  VTY  L+DG+C +  
Sbjct: 351 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D MV +G +P   +YN+LI+     ++M +A  +L++M  +G++ D++TYN 
Sbjct: 411 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A +L  EM+  G  P ++TY  L+  L K + + EA  L +      
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI+++N  IDG C  G +E A  L   +    + PD  TYN ++HG C++G ++EA 
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 590

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G   D          YN +I+G  ++ E   A +LL+EM+++G + D +T 
Sbjct: 591 KLFRKMDENGCSRDGC-------IYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTT 643

Query: 301 FSLIE 305
             ++E
Sbjct: 644 TLIVE 648



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 155/312 (49%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++  C   RL  A  +L ++ + G  P   T+NTLI G C +G 
Sbjct: 176 MDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGK 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+ + +G  P   TY  L++ L        A  +L+ M +K   P+ I YN 
Sbjct: 236 IGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNT 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF+L  EMI KGI P + TY SLI  L           L    +   
Sbjct: 296 IIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 355

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V+F+ ++D  C  G I  A  ++  M +  V PD VTY  LM G C + +++EA 
Sbjct: 356 IMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV 415

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +G  P+  S       YN LI G C+ Q  D A  LL +M  +G+  D  TY
Sbjct: 416 KVFDTMVHKGCVPNVRS-------YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTY 468

Query: 301 FSLIEGIASVDK 312
            +LI G+  V +
Sbjct: 469 NTLIHGLCHVGR 480



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 157/309 (50%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K         +  QM   G+ P   T N LI+ +C+   L  AFS 
Sbjct: 148 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 207

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +T+N LI  L +E K+ EA  +  +   +G  PD +TY  L+NG C+
Sbjct: 208 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 267

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M+ K  +P ++ Y ++I  L K  ++ EA  LF   + KG+ PDI  
Sbjct: 268 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 327

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI   C     +   +LL EM   K+ P+ V ++T++   C++G +  A  ++D M 
Sbjct: 328 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 387

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
           +RG++PD +       TY AL+ G C   E D A ++   MV KG  P+  +Y  LI G 
Sbjct: 388 KRGVEPDVV-------TYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 440

Query: 307 --IASVDKA 313
             I  +DKA
Sbjct: 441 CQIQRMDKA 449



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 7/248 (2%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+     P+   +  L+  +   +       +  +M   GI PD  T NI
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 190

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C       AFS+  +++  G QP   T+ +LI  L  + ++ EA  LF+  + +G
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 250

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +  L++G C  GN   A  LL+ M +    P+ + YNT++   C+  +V EA 
Sbjct: 251 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 310

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +GI PD         TYN+LI  LC   E      LL EMV+  I P+   +
Sbjct: 311 NLFSEMITKGISPD-------IFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 363

Query: 301 FSLIEGIA 308
            ++++ + 
Sbjct: 364 STVVDALC 371



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 7/185 (3%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A S  + M+H    P+ + +T L+  ++K         L     + G+ PD+   N LI+
Sbjct: 134 ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILIN 193

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C    +  AFS+L ++ ++   PD  T+NTL+ G C +GK+ EA  L D+    G +P
Sbjct: 194 SFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQP 253

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           D +       TY  L+ GLCK      A  LLR MV K   P+   Y ++I+ +    + 
Sbjct: 254 DVV-------TYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQV 306

Query: 314 AESSN 318
            E+ N
Sbjct: 307 TEAFN 311



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 4/181 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY   +  +CK   L EA  +L+ ++ + L    + YN  IDG C  G 
Sbjct: 491 MVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGE 550

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P   TYN++IH L     + EA+ + ++M E G   D   YN 
Sbjct: 551 LEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNT 610

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+ R      A  L  EM+ +G    + T T ++ +LS        DQ FE    +G
Sbjct: 611 IIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDDG----LDQSFERLRLRG 666

Query: 181 M 181
           +
Sbjct: 667 V 667


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 182/337 (54%), Gaps = 33/337 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  TYG  ++G+CK GR++ A  +  ++ +    P  V +NTLI G+   G 
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGR 368

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A +   +MV   GI+P   TYN LI+    E  +  A ++L +M  KG  P+  +Y 
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL++G+C+ G   +A+++ +EM   G++P  + +  LI    K++R+ EA ++F     K
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD+  FN+LI G C    I+ A  LL++M    V  + VTYNTL++   R+G+++EA
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
           R+L+++M  +G   D I++N                            P+ ++ N LI G
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           LC++   + A E  +EMV +G TPD  T+ SLI G+ 
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLC 645



 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 166/307 (54%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G +P+ Y+Y   V G CK G+++EA  +L +M  +GL P  V +N LI  +C +  
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM ++G  P   T+N LI  L    ++  A  +L++M  +G+V +++TYN 
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN + R G  K+A  L +EM+ +G     +TY SLI  L +   + +A  LFE  L  G
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  +  N LI+G C +G +E A    KEM      PD VT+N+L++G CR G++E+  
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +++  GI PD +       T+N L+  LCK      A  LL E +  G  P+  T+
Sbjct: 655 TMFRKLQAEGIPPDTV-------TFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTW 707

Query: 301 FSLIEGI 307
             L++ I
Sbjct: 708 SILLQSI 714



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G+ PD  TY S + G  KEG +  A  +L  M+  G  P   +Y  L+DG+C  G 
Sbjct: 380 VTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A++  +EM   G+ P    +N LI     E ++ EA ++ +EM  KG  PD  T+N 
Sbjct: 440 IDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 499

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C     K A  L  +MI +G+    +TY +LI    ++  + EA +L    + +G
Sbjct: 500 LISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N+LI G C  G +++A SL ++M R    P  ++ N L++G CR G VEEA 
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M  RG  PD +       T+N+LI GLC+    +    + R++ ++GI PD  T+
Sbjct: 620 EFQKEMVLRGSTPDIV-------TFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTF 672

Query: 301 FSLIEGIA 308
            +L+  + 
Sbjct: 673 NTLMSWLC 680



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 12/313 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR + P  +T+G  +   C    ++ A  +L  M ++G VP +V Y TLI        
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNR 267

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM   G +P A T+N +I  L    ++ EA  M+  M  +G  PD ITY  
Sbjct: 268 VNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           L+NG C+ G    A     ++ ++  +P ++ + +LI       R+ +A  +  + +   
Sbjct: 328 LMNGLCKIGRVDAA----KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++PD+  +N+LI G+   G +  A  +L +M      P+  +Y  L+ G C+ GK++EA
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L++M   G+KP+ + F       N LI   CK      A E+ REM  KG  PD  T
Sbjct: 444 YNVLNEMSADGLKPNTVGF-------NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 496

Query: 300 YFSLIEGIASVDK 312
           + SLI G+  VD+
Sbjct: 497 FNSLISGLCEVDE 509



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 125/240 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +PD YT+ S +SG+C+   ++ A  +L  M   G+V   VTYNTLI+ +  +G 
Sbjct: 485 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE 544

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EMV QG      TYN LI  L    ++ +A  + ++M   G  P +I+ NI
Sbjct: 545 IKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNI 604

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING CR G  ++A     EM+ +G  P ++T+ SLI  L +  R+ +   +F    A+G
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V FN L+   C  G +  A  LL E       P+  T++ L+     Q  ++  R
Sbjct: 665 IPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRR 724



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 160/324 (49%), Gaps = 21/324 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNT----LIDGY 55
           MK  G+      + S +    K G   + +R++ +M+      PT  +YN     L+ G 
Sbjct: 137 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 196

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           C+K    +A +   +M+ + I PT  T+ +++       ++  A  +L++M + G VP+S
Sbjct: 197 CHK----VAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNS 252

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + Y  LI+   +C    +A  L +EM   G  P   T+  +I  L K +R+ EA ++   
Sbjct: 253 VIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNR 312

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            L +G  PD + +  L++G C  G ++ A  L   + +    P+ V +NTL+HG    G+
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGR 368

Query: 236 VEEARRLL-DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           +++A+ +L D +   GI PD         TYN+LI G  K     LA E+L +M +KG  
Sbjct: 369 LDDAKAVLSDMVTSYGIVPD-------VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCK 421

Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
           P+  +Y  L++G   + K  E+ N
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYN 445


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R   P   TY   V  +CK  R+ +AS +LE M E G  P  VTYNTLI+G+C  GN++ 
Sbjct: 96  RHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 155

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    ++M++    P   TYN+LI     + +  +   +L+EM + G  P+ ITYN L++
Sbjct: 156 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 215

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
              + G    AF+L   M+ +  +P+  T+  +I +  K  ++  A +LF+    +G LP
Sbjct: 216 SLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLP 275

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I G C    I+ A  LL+ M      PD VTYN+++ G C+  +V+EA  + 
Sbjct: 276 DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 335

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + ++  G   D +       T + LI GLCK++  D AE+LLREM   G  PD   Y  L
Sbjct: 336 EVLRNGGYFLDVV-------TCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTIL 388

Query: 304 IEGIASVDKAAES 316
           I G    D+  +S
Sbjct: 389 IHGFCKADQLDKS 401



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 156/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY + ++G CK G ++EA  +  QM EN   P   TYN LIDGYC +  
Sbjct: 128 MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQER 187

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       EMVK G  P   TYN L+  L+   K ++A ++ + M  +   P   T+N+
Sbjct: 188 PQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNL 247

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G    A+ L   M  +G  P + TY  +I    + NR+ +A QL E     G
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N+++ G C    ++ A+ + + +       D VT +TL+ G C+  ++++A 
Sbjct: 308 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 367

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL +M+R G  PD ++       Y  LI G CK  + D +     EM+ KG  P   TY
Sbjct: 368 KLLREMERNGSAPDVVA-------YTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITY 420

Query: 301 FSLIEGIA 308
             +I+ + 
Sbjct: 421 SIVIDKLC 428



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 152/330 (46%), Gaps = 29/330 (8%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
             +S   ++ + +EA  + +        P ++TY+TLI+G+C   + + A+   DEM K+
Sbjct: 3   CLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKR 62

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           GI+P  + YN +I  L    ++  A    ++M ++   P  ITY IL++  C+      A
Sbjct: 63  GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISDA 121

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
             + ++MI  G  P ++TY +LI    K   M EA  LF   L     PD+  +N LIDG
Sbjct: 122 SLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDG 181

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           +C     +    LL+EM +    P+ +TYNTLM    + GK  +A  L   M RR  KP 
Sbjct: 182 YCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPS 241

Query: 255 HISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLR 286
           H +FN                            P   TYN +I G C+    D A +LL 
Sbjct: 242 HFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLE 301

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            M   G  PD  TY S++ G+    +  E+
Sbjct: 302 RMTEAGCPPDVVTYNSIVSGLCKASQVDEA 331



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 35/286 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTL--------- 51
           M      PD +TY   + G CK+ R ++ +++L++M + G  P  +TYNTL         
Sbjct: 163 MLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGK 222

Query: 52  --------------------------IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                     ID +C  G L++A+     M  +G +P   TYN+
Sbjct: 223 YIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNI 282

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I       ++ +A  +L+ M E G  PD +TYN +++G C+     +A+ +++ + + G
Sbjct: 283 MISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGG 342

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               ++T ++LI  L K  R+ +A++L       G  PD+V +  LI G C    ++++ 
Sbjct: 343 YFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSL 402

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           +   EM      P  +TY+ ++   C+  +V +   LL  M  RG+
Sbjct: 403 AFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N L+   + ++K  EA D+ K        PDSITY+ LING+C+  + ++A+ L DEM  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           +GI P    Y ++I  L    R+  A   + + + +   P ++ +  L+D  C +  I  
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRD-MQRHCAPSVITYTILVDALCKSARISD 120

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  +L++M      P+ VTYNTL++G C+ G ++EA  L +QM      PD         
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD-------VF 173

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           TYN LI G CK +      +LL+EMV  G  P+  TY +L++ +    K  ++ N
Sbjct: 174 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFN 228


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 172/309 (55%), Gaps = 11/309 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  T+ + ++G+C EGR+ +A  ++++M E G  P    Y T+I+G C  G+
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A +   +M +  I      YN +I  L  +   + A ++  EM +KGI PD ITY+ 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +CR G    A  L  +MI + I P ++T+++LI  L K+ ++ EA++++ + L +G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + +N++IDG C    +  A  +L  M      PD VT++TL++G C+  +V+   
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGM 236

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M RRGI  + +       TY  LI G C+  + D A++LL  M+S G+ P+  T+
Sbjct: 237 EIFCEMHRRGIVANTV-------TYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITF 289

Query: 301 FSLIEGIAS 309
            S++  + S
Sbjct: 290 QSMLASLCS 298



 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 158/288 (54%), Gaps = 11/288 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP    YG+ ++G+CK G  E A  +L +M+E  +    V YN +ID  C  G+
Sbjct: 36  MVEEGHQP----YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGH 91

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM  +GI P   TY+ +I       +  +A+ +L++M E+ I PD +T++ 
Sbjct: 92  HIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSA 151

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN   + G   +A  ++ +M+ +GI PT +TY S+I    KQ+R+ +A ++ ++  +K 
Sbjct: 152 LINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKS 211

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V F+ LI+G+C    ++    +  EM R  +  + VTY TL+HG C+ G ++ A+
Sbjct: 212 CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQ 271

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
            LL+ M   G+ P++I+F        +++  LC  +E   A  +L ++
Sbjct: 272 DLLNVMISSGVAPNYITF-------QSMLASLCSKKELRKAFAILEDL 312



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 144/275 (52%), Gaps = 11/275 (4%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           M E G  P  VT+ TL++G C +G +  A +  D MV++G  P    Y  +I+ L     
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
              A ++L +M E  I    + YN +I+  C+ G+   A +L  EM  KGI P ++TY+ 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           +I    +  R  +A+QL  + + + + PD+V F+ALI+     G +  A  +  +M R  
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           + P  +TYN+++ G C+Q ++ +A+R+LD M  +   PD ++F+        LI G CK 
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFS-------TLINGYCKA 229

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           +  D   E+  EM  +GI  +  TY +LI G   V
Sbjct: 230 KRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQV 264



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 132/248 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++     Y + +  +CK+G    A  +  +M + G+ P  +TY+ +ID +C  G 
Sbjct: 67  MEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGR 126

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++ I P   T++ LI+ L+ E K+ EA+++  +M  +GI P +ITYN 
Sbjct: 127 WTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNS 186

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+      A  + D M  K   P ++T+++LI    K  R+    ++F     +G
Sbjct: 187 MIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 246

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ + V +  LI G C  G+++ A  LL  M    V P+ +T+ +++   C + ++ +A 
Sbjct: 247 IVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAF 306

Query: 241 RLLDQMKR 248
            +L+ +++
Sbjct: 307 AILEDLQK 314



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  TY   +   C+ GR  +A ++L  M E  + P  VT++ LI+    +G 
Sbjct: 102 MHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGK 161

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M+++GI PT  TYN +I     + ++ +A  ML  M  K   PD +T++ 
Sbjct: 162 VSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFST 221

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+         +  EM  +GI    +TYT+LI    +   +  A  L    ++ G
Sbjct: 222 LINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSG 281

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
           + P+ + F +++   C+   + +AF++L+++ + + H
Sbjct: 282 VAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEGH 318



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 11/207 (5%)

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M E G  PD +T+  L+NG C  G   +A +L D M+ +G QP    Y ++I  L K   
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
              A  L        +   +V++NA+ID  C +G+   A +L  EM    + PD +TY+ 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           ++   CR G+  +A +LL  M  R I PD +       T++ALI  L K  +   AEE+ 
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVV-------TFSALINALVKEGKVSEAEEIY 169

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDK 312
            +M+ +GI P   TY S+I+G    D+
Sbjct: 170 GDMLRRGIFPTTITYNSMIDGFCKQDR 196



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 11/176 (6%)

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+  G +P ++T+T+L+  L  + R+++A  L +  + +G  P    +  +I+G C  G+
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A +LL +M+   +    V YN ++   C+ G    A+ L  +M  +GI PD I    
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVI---- 112

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              TY+ +I   C++     AE+LLR+M+ + I PD  T+ +LI  +    K +E+
Sbjct: 113 ---TYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEA 165


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 173/370 (46%), Gaps = 77/370 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV+P   TY S + G C++GR++EA ++  +M + G  P  VTY TL+ GY  K  
Sbjct: 421 MKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKA 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A++  +EM + G+     TYN+LI+ L M  ++ E D+MLK    +G VP ++TYN 
Sbjct: 481 FDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNS 540

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS-----------------LIFV---- 159
           +ING+ + G    AF ++ +M  KGI P ++TYTS                 LI+V    
Sbjct: 541 IINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDG 600

Query: 160 --------------LSKQNRMIEADQLFENFLAKGMLPDIVMFNA--------------- 190
                           KQ  M  A       L  G+ PD+ ++N+               
Sbjct: 601 IQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEAS 660

Query: 191 --------------------LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
                               LIDG    GN+  A  L  EM    V PD+ T+  L HG 
Sbjct: 661 KFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGL 720

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           CR G ++ A+RLLD M+R  + P+ +       TYN LI    ++ +   A +L  EM+S
Sbjct: 721 CRSGDIDGAKRLLDDMRRLDVSPNIV-------TYNMLINACVRDGKLQEAFQLHDEMLS 773

Query: 291 KGITPDDNTY 300
            G+ PDD TY
Sbjct: 774 SGVVPDDTTY 783



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 158/336 (47%), Gaps = 44/336 (13%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD +TYG  +  +CK  +L EA  + ++MKE G+ P+ VTY++L+ GYC KG ++ A   
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452

Query: 68  RDEMVKQGIMPTAS-----------------------------------TYNLLIHELLM 92
             EM  +G  P                                      TYN+LI+ L M
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYM 512

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
             ++ E D+MLK    +G VP ++TYN +ING+ + G    AF ++ +M  KGI P ++T
Sbjct: 513 VNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVT 572

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           YTS I    + N    A +L       G+ PDI  +NA ID  C  GN+ RA   L  + 
Sbjct: 573 YTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLL 632

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM-KRRGIKPDHISFNPTRLTYNALIQG 271
           +  + PD   YN+ + G      + EA +    M K+R +    I        Y  LI G
Sbjct: 633 KDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEI--------YTTLIDG 684

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             K      A EL  EM++  + PDD T+ +L  G+
Sbjct: 685 FSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGL 720



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 162/317 (51%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+   +Y +   + G+ ++ R ++A  +LE + + G VP   TY  LI   C    
Sbjct: 352 MIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTG-VPDVFTYGCLIHWLCKHQK 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +  D+M + G+ P+  TY+ L+     + +M EA  +  EM +KG  P+ +TY  
Sbjct: 411 LHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTT 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY +      A++L +EM   G+     TY  LI  L   NR+ E D++ + FL++G
Sbjct: 471 LMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEG 530

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N++I+G    G +  AF + ++M +  + P+ VTY + + G CR    + A 
Sbjct: 531 FVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAV 590

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  ++R GI+PD  +       YNA I   CK      A   L  ++  G+TPD   Y
Sbjct: 591 KLLIYVRRDGIQPDIAA-------YNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVY 643

Query: 301 FSLIEGIASVDKAAESS 317
            S + G  ++   AE+S
Sbjct: 644 NSFVTGYKNLKMMAEAS 660



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 129/257 (50%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G  P + TY S ++G  K G +  A  M  QM++ G+ P  VTY + IDGYC     +
Sbjct: 528 SEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCD 587

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           +A      + + GI P  + YN  I     +  M  A   L  + + G+ PD   YN  +
Sbjct: 588 LAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFV 647

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            GY       +A   +  MI + +      YT+LI   SK   +  A +L+   +A  ++
Sbjct: 648 TGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVI 707

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD   F AL  G C +G+I+ A  LL +M R+ V P+ VTYN L++   R GK++EA +L
Sbjct: 708 PDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQL 767

Query: 243 LDQMKRRGIKPDHISFN 259
            D+M   G+ PD  +++
Sbjct: 768 HDEMLSSGVVPDDTTYD 784



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P+  TY SF+ G C+    + A ++L  ++ +G+ P    YN  ID +C +GN
Sbjct: 561 MRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGN 620

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F   ++K G+ P  + YN  +      + M EA      M ++ +V D+  Y  
Sbjct: 621 MSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTT 680

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN   A  L+ EM+   + P   T+T+L   L +   +  A +L ++     
Sbjct: 681 LIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLD 740

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
           + P+IV +N LI+    +G ++ AF L  EM    V PD+ TY+ L
Sbjct: 741 VSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 133/301 (44%), Gaps = 28/301 (9%)

Query: 34  EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
            +M   G+VP A +   L+       +   A +  DEM  +G    A  Y+++I   +  
Sbjct: 139 SRMVTRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRG 198

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
               +A  +  EM   G+ PD   Y I I+G C+  +A +A  +  +M   G +P  LTY
Sbjct: 199 GMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTY 258

Query: 154 TSLIFVLSKQNRMIEADQLFEN-FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           +S++ VL K  RM EA +L +   LA G   D+V+   L+ G+C +G + +A  L  E+ 
Sbjct: 259 SSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVV 318

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------- 259
              V P  VTY  L+ G   +G  +E  +L  QM  +G+      FN             
Sbjct: 319 SDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWK 378

Query: 260 --------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                         P   TY  LI  LCK+Q+   A  L  +M   G+ P   TY SL+ 
Sbjct: 379 DAIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLL 438

Query: 306 G 306
           G
Sbjct: 439 G 439


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 168/313 (53%), Gaps = 3/313 (0%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   T+ + +SG C+E  LE A  +L+ M  +G+    VTYNTL+DG C  G L+ A
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               + M   G  P    Y+  ++ L    K++ A  +L++M +    P+ +TYN +++G
Sbjct: 207 EQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDG 266

Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            C+ G    A  + ++M    G    ++ Y++++  L K  R  EA  + E     G  P
Sbjct: 267 LCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRP 326

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +++L++G C  G IE A   ++EM      P+ VTY +L+HG C  G++ EA R++
Sbjct: 327 DVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMV 386

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   G   DH    P+  TYNALI GLCK    D A +  + M S+G  PD  +Y ++
Sbjct: 387 EEMSSGGGGGDHCP--PSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444

Query: 304 IEGIASVDKAAES 316
           +EG+A   +A ++
Sbjct: 445 VEGLARSGRALQA 457



 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 177/354 (50%), Gaps = 45/354 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M +RG+QP+  +Y   + G+CK  R  EA  ++  M   G    P  VTY+TL+ GYC  
Sbjct: 36  MAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKA 95

Query: 59  GNLEMAFSFRDE-----------------------------------MVKQGIMPTASTY 83
           G +E +     E                                   M++ G  PT  T+
Sbjct: 96  GKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITF 155

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N LI     E+ +  AD +L+ M   G+  D +TYN L++G C+ G  ++A  L + M  
Sbjct: 156 NTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKA 215

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P ++ Y+S ++ L K  +++ A Q+ E        P++V +N ++DG C +G I+ 
Sbjct: 216 SGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDT 275

Query: 204 AFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           A  ++++M        + V Y+T++ G C+ G+ +EAR +++ M R G +PD +      
Sbjct: 276 ALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV------ 329

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY++L+ GLCK  + + A E +REM  +G  P+  TY SL+ G+ S  + AE+
Sbjct: 330 -TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEA 382



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  TY S V+G+CK G++EEA   + +M   G  P AVTY +L+ G C+ G 
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378

Query: 61  LEMAFSFRDEMVKQGIM-----PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           L  A    +EM   G       P+ STYN LI  L    ++ +A    + M  +G  PD 
Sbjct: 379 LAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDG 438

Query: 116 ITYNILINGYCRCGNAKKA 134
           ++Y+ ++ G  R G A +A
Sbjct: 439 VSYSTIVEGLARSGRALQA 457


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 168/344 (48%), Gaps = 42/344 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P+  TY   V+G+ K+G LE+A  ++E+M  +GL  +A TYN LI+G+C KG 
Sbjct: 241 MQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGL 300

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF   +EMV +   PT STYN L++ L    ++        +M +    PD +++N 
Sbjct: 301 FVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNS 360

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-------- 172
           L+ GYCR G   +AF L DE+  + + PT++TY +LI  L     +  A +L        
Sbjct: 361 LLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQG 420

Query: 173 ---------------------------FENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                      F   L+KG+ PD   +N  I G     +   AF
Sbjct: 421 LFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAF 480

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           S+ +EM      PD +TYN  +H  C+QG  EEA  LL+ M   G+ PDH+       TY
Sbjct: 481 SMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHV-------TY 533

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            ++I G  KN     A E+  EM+SKG+ P   TY  LI   A+
Sbjct: 534 TSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAA 577



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 163/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD       +  +  E  L +A  +   M++ G+ PT VTYNT++D YC +G 
Sbjct: 171 MIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGR 230

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM ++G  P   TYN+L++ L  + ++ +A  +++EM   G+   + TYN 
Sbjct: 231 VDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNP 290

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+ G   +AF L +EM+++   PT+ TY +L++ L K  ++      F + L   
Sbjct: 291 LINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSK 350

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV FN+L+ G+C  G I  AF L  E+    + P  +TYNTL+HG C  G ++ A 
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL  +M  +G+ PD         TY  L+ G  K     +A     EM+SKG+ PD   Y
Sbjct: 411 RLKKEMTDQGLFPD-------IFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAY 463

Query: 301 FSLIEG 306
            + I G
Sbjct: 464 NTRIVG 469



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS+   PD  ++ S + G C+ G + EA  + +++K   LVPT +TYNTLI G C  G 
Sbjct: 347 LKSK-FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A   + EM  QG+ P   TY +L++       +  A     EM  KG+ PD   YN 
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G  +  +   AFS+ +EM+  G  P ++TY   +  L +Q    EA  L EN ++ G
Sbjct: 466 RIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG 525

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V + ++I+G   NG++ +A  +  EM    V P  VTY  L+H    +  ++ A 
Sbjct: 526 LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAF 585

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M  + +  + I       TYNA+I GLC  +  D A +   EM  KGI P+  +Y
Sbjct: 586 MYFSKMLEKSVPANVI-------TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSY 638

Query: 301 FSLI 304
             LI
Sbjct: 639 TILI 642



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 153/296 (51%), Gaps = 12/296 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD +TY   V+G  K G +  A     +M   GL P    YNT I G     +
Sbjct: 416 MTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIAD 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +AFS ++EM+  G  P   TYN+ +H L  +    EA D+L+ M   G++PD +TY  
Sbjct: 476 TSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTS 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G+ +KA  + +EM+ KG+ P+++TYT LI   + +  +  A   F   L K 
Sbjct: 536 IINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKS 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +++ +NA+I+G C    ++ A+    EM+   + P++ +Y  L++  C  G  EEA 
Sbjct: 596 VPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEAL 655

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYN----------ALIQGLCKNQEGDLAEELLR 286
           RL  +M  R I+PD  SF  +    N            ++ L +N E ++   LLR
Sbjct: 656 RLYREMLDRKIQPD--SFTHSVFLKNLHRDYQVHAVQCVESLIQNVEDNINVRLLR 709



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 7/275 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           + ++M  NGL+P     N ++    ++  L  A +    M + GI PT  TYN ++    
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            E ++ +A ++L EM E+G  P+ +TYN+L+NG  + G  ++A  L +EM++ G+  +  
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY  LI    ++   +EA  L E  + +   P +  +N L+ G C    +        +M
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            + K  PD V++N+L++G CR G + EA  L D++K R +        PT +TYN LI G
Sbjct: 347 LKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLV-------PTVITYNTLIHG 399

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LC     D A  L +EM  +G+ PD  TY  L+ G
Sbjct: 400 LCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNG 434



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 104/190 (54%), Gaps = 13/190 (6%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           ++LI G+  C        + D+MI  G+ P +     ++ VL  +N + +A  ++     
Sbjct: 155 DVLIAGHVXC------LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQ 208

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+ P +V +N ++D +C  G +++A  LL EM     +P++VTYN L++G  ++G++E+
Sbjct: 209 FGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQ 268

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A+ L+++M   G+       N +  TYN LI G C+      A +L+ EMV++   P  +
Sbjct: 269 AKGLIEEMLNSGL-------NVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLS 321

Query: 299 TYFSLIEGIA 308
           TY +L+ G+ 
Sbjct: 322 TYNTLMYGLC 331


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 168/344 (48%), Gaps = 42/344 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P+  TY   V+G+ K+G LE+A  ++E+M  +GL  +A TYN LI+G+C KG 
Sbjct: 241 MQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGL 300

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF   +EMV +   PT STYN L++ L    ++        +M +    PD +++N 
Sbjct: 301 FVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNS 360

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-------- 172
           L+ GYCR G   +AF L DE+  + + PT++TY +LI  L     +  A +L        
Sbjct: 361 LLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQG 420

Query: 173 ---------------------------FENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                      F   L+KG+ PD   +N  I G     +   AF
Sbjct: 421 LFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAF 480

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           S+ +EM      PD +TYN  +H  C+QG  EEA  LL+ M   G+ PDH+       TY
Sbjct: 481 SMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHV-------TY 533

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            ++I G  KN     A E+  EM+SKG+ P   TY  LI   A+
Sbjct: 534 TSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAA 577



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 163/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD       +  +  E  L +A  +   M++ G+ PT VTYNT++D YC +G 
Sbjct: 171 MIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGR 230

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM ++G  P   TYN+L++ L  + ++ +A  +++EM   G+   + TYN 
Sbjct: 231 VDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNP 290

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+ G   +AF L +EM+++   PT+ TY +L++ L K  ++      F + L   
Sbjct: 291 LINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSK 350

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV FN+L+ G+C  G I  AF L  E+    + P  +TYNTL+HG C  G ++ A 
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL  +M  +G+ PD         TY  L+ G  K     +A     EM+SKG+ PD   Y
Sbjct: 411 RLKKEMTDQGLFPD-------IFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAY 463

Query: 301 FSLIEG 306
            + I G
Sbjct: 464 NTRIVG 469



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS+   PD  ++ S + G C+ G + EA  + +++K   LVPT +TYNTLI G C  G 
Sbjct: 347 LKSK-FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A   + EM  QG+ P   TY +L++       +  A     EM  KG+ PD   YN 
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G  +  +   AFS+ +EM+  G  P ++TY   +  L +Q    EA  L EN ++ G
Sbjct: 466 RIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG 525

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V + ++I+G   NG++ +A  +  EM    V P  VTY  L+H    +  ++ A 
Sbjct: 526 LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAF 585

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M  + +  + I       TYNA+I GLC  +  D A +   EM  KGI P+  +Y
Sbjct: 586 MYFSKMLEKSVPANVI-------TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSY 638

Query: 301 FSLI 304
             LI
Sbjct: 639 TILI 642



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 139/257 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD +TY   V+G  K G +  A     +M   GL P    YNT I G     +
Sbjct: 416 MTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIAD 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +AFS ++EM+  G  P   TYN+ +H L  +    EA D+L+ M   G++PD +TY  
Sbjct: 476 TSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTS 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G+ +KA  + +EM+ KG+ P+++TYT LI   + +  +  A   F   L K 
Sbjct: 536 IINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKS 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +++ +NA+I+G C    ++ A+    EM+   + P++ +Y  L++  C  G  EEA 
Sbjct: 596 VPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEAL 655

Query: 241 RLLDQMKRRGIKPDHIS 257
           RL  +M  R I+PD  +
Sbjct: 656 RLYREMLDRKIQPDSFT 672



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 7/275 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           + ++M  NGL+P     N ++    ++  L  A +    M + GI PT  TYN ++    
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            E ++ +A ++L EM E+G  P+ +TYN+L+NG  + G  ++A  L +EM++ G+  +  
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY  LI    ++   +EA  L E  + +   P +  +N L+ G C    +        +M
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            + K  PD V++N+L++G CR G + EA  L D++K R +        PT +TYN LI G
Sbjct: 347 LKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLV-------PTVITYNTLIHG 399

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LC     D A  L +EM  +G+ PD  TY  L+ G
Sbjct: 400 LCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNG 434



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 116/240 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++PD + Y + + G  K      A  M E+M   G  P  +TYN  +   C +GN
Sbjct: 451 MLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGN 510

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    + MV  G++P   TY  +I+  +    + +A ++  EM  KG+ P  +TY +
Sbjct: 511 FEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTV 570

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +        AF    +M+ K +   ++TY ++I  L    RM EA + F+    KG
Sbjct: 571 LIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKG 630

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+   +  LI+  C  G  E A  L +EM   K+ PD  T++  +    R  +V   +
Sbjct: 631 ILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVHAVQ 690



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 104/190 (54%), Gaps = 13/190 (6%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           ++LI G+  C        + D+MI  G+ P +     ++ VL  +N + +A  ++     
Sbjct: 155 DVLIAGHVXC------LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQ 208

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+ P +V +N ++D +C  G +++A  LL EM     +P++VTYN L++G  ++G++E+
Sbjct: 209 FGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQ 268

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A+ L+++M   G+       N +  TYN LI G C+      A +L+ EMV++   P  +
Sbjct: 269 AKGLIEEMLNSGL-------NVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLS 321

Query: 299 TYFSLIEGIA 308
           TY +L+ G+ 
Sbjct: 322 TYNTLMYGLC 331


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTLI+GY   G+L+  
Sbjct: 131 GYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   T  +LI+ L  E KM EA+++  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ +G  P ++TY +LI+ L ++  + +A  L      KG+ PD
Sbjct: 251 HCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF L K M    +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP++        TY  +I G CK  +   A +LL+EM   G  P
Sbjct: 371 EMLSVGLKPENG-------TYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +++       T   +++      
Sbjct: 56  LETKGAQRSDIYVFSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LINGY R G+  K F L   M   G+ P + T T LI  L K+++M EA++LF   L K
Sbjct: 176 TLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC +G ++ A  + K+M R    PD +TYNTL++G CR+G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R L+ +M  +G+KPD       ++TY  LI G CK  + + A EL + M+ + I  DD  
Sbjct: 296 RDLIVEMSMKGLKPD-------KITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    +A ++
Sbjct: 349 YTALISGLCQEGRAVDA 365



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV PD YT    ++G+CKE +++EA+ +  +M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M++QG  P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF L   MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+   +  +I+G C  G+++ A  LLKEM R    P  VT
Sbjct: 377 LKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 170/332 (51%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRGV PD  T+ + + G  +EG +E A R+  +M E G   T VT N LI+GYC  G 
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  +  + +  G  P   TYN  ++ L     +  A  ++  M ++G  PD  TYNI
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ G  ++A  + ++M+ +G  P + T+ +LI  L   NR+ EA  L      KG
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN LI+  C  G+   A  L +EM      PDEVTYNTL+   C  GK+ +A 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL  M+  G     I++N                               +T+N LI GL
Sbjct: 447 DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           CK+++ D A EL+ +M+S+G+ P++ TY S++
Sbjct: 507 CKDKKIDDAFELINQMISEGLQPNNITYNSIL 538



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 168/308 (54%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY +FV+G+C+   +  A ++++ M + G  P   TYN +++  C  G LE A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++MV +G +P  +T+N LI  L    ++ EA D+ +++  KG+ PD  T+NILIN 
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   A  L +EM + G  P  +TY +LI  L    ++ +A  L ++  + G    
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +N +IDG C    IE A  +  +MD   +  + +T+NTL+ G C+  K+++A  L++
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G++P++I       TYN+++   CK  +   A ++L  M + G   D  TY +LI
Sbjct: 521 QMISEGLQPNNI-------TYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573

Query: 305 EGIASVDK 312
            G+    +
Sbjct: 574 NGLCKAGR 581



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 173/349 (49%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++PD  T+ + +  +C+  ++  A  MLE+M   G+ P   T+ TL+ G+  +G+
Sbjct: 172 MGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGS 231

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   +  M++ G   T  T N+LI+      ++ +A   +++    G  PD ITYN 
Sbjct: 232 IEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNT 291

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +NG C+  +   A  + D M+ +G  P + TY  ++  L K  ++ EA  +    + +G
Sbjct: 292 FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG 351

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPDI  FN LI   CT   +E A  L +++    V PD  T+N L++  C+ G    A 
Sbjct: 352 CLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLAL 411

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
           RL ++MK  G  PD +++N                             + +TYN +I GL
Sbjct: 412 RLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAESSN 318
           CK    + AEE+  +M  +GI+ +  T+ +LI+G+     +D A E  N
Sbjct: 472 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 160/306 (52%), Gaps = 10/306 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD YT+   ++ +CK G    A R+ E+MK +G  P  VTYNTLID  C+ G L  
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK 444

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M   G   +  TYN +I  L  + ++ EA+++  +M  +GI  ++IT+N LI+
Sbjct: 445 ALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+      AF L ++MI +G+QP  +TY S++    KQ  + +A  + E   A G   
Sbjct: 505 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +  LI+G C  G  + A  +L+ M    + P    YN ++    R+  + +A  L 
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLF 624

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYF 301
            +M   G  PD        LTY  + +GLC+   G + E  + + EMV KG  P+ +++ 
Sbjct: 625 REMAEVGEPPDA-------LTYKIVFRGLCRGG-GPIKEAFDFMLEMVDKGFIPEFSSFR 676

Query: 302 SLIEGI 307
            L EG+
Sbjct: 677 MLAEGL 682



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+Q D+  Y   ++ + +  +++    +  +M   G+ P  VT+NTL+   C    +  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM  +G+ P  +T+  L+   + E  +  A  +   M E G     +T N+LING
Sbjct: 201 VIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G  + A     + I  G +P  +TY + +  L + + +  A ++ +  + +G  PD
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +++  C NG +E A  +L +M      PD  T+NTL+   C   ++EEA  L  
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           Q+  +G+ PD         T+N LI  LCK  +  LA  L  EM + G TPD+ TY +LI
Sbjct: 381 QVTVKGVSPD-------VYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 305 EGIASVDKAAES 316
           + + S+ K  ++
Sbjct: 434 DNLCSLGKLGKA 445



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 140/259 (54%), Gaps = 1/259 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY + +  +C  G+L +A  +L+ M+  G   + +TYNT+IDG C K  
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D+M  QGI   A T+N LI  L  ++K+ +A +++ +M  +G+ P++ITYN 
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ G+ KKA  + + M   G +  ++TY +LI  L K  R   A ++      KG
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M P    +N ++       NI  A SL +EM  +   PD +TY  +  G CR  G ++EA
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEA 656

Query: 240 RRLLDQMKRRGIKPDHISF 258
              + +M  +G  P+  SF
Sbjct: 657 FDFMLEMVDKGFIPEFSSF 675



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D  TYG+ ++G+CK GR + A ++L  M+  G+ PT   YN ++     + N
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYN 119
           +  A S   EM + G  P A TY ++   L      + EA D + EM +KG +P+  ++ 
Sbjct: 617 IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFR 676

Query: 120 ILINGYCRCG 129
           +L  G    G
Sbjct: 677 MLAEGLLNLG 686


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 170/332 (51%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRGV PD  T+ + + G  +EG +E A R+  +M E G   T VT N LI+GYC  G 
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  +  + +  G  P   TYN  ++ L     +  A  ++  M ++G  PD  TYNI
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ G  ++A  + ++M+ +G  P + T+ +LI  L   NR+ EA  L      KG
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN LI+  C  G+   A  L +EM      PDEVTYNTL+   C  GK+ +A 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL  M+  G     I++N                               +T+N LI GL
Sbjct: 447 DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           CK+++ D A EL+ +M+S+G+ P++ TY S++
Sbjct: 507 CKDKKIDDAFELINQMISEGLQPNNITYNSIL 538



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 168/308 (54%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY +FV+G+C+   +  A ++++ M + G  P   TYN +++  C  G LE A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++MV +G +P  +T+N LI  L    ++ EA D+ +++  KG+ PD  T+NILIN 
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   A  L +EM + G  P  +TY +LI  L    ++ +A  L ++  + G    
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +N +IDG C    IE A  +  +MD   +  + +T+NTL+ G C+  K+++A  L++
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G++P++I       TYN+++   CK  +   A ++L  M + G   D  TY +LI
Sbjct: 521 QMISEGLQPNNI-------TYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573

Query: 305 EGIASVDK 312
            G+    +
Sbjct: 574 NGLCKAGR 581



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 173/349 (49%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG++PD  T+ + +  +C+  ++  A  MLE+M   G+ P   T+ TL+ G+  +G+
Sbjct: 172 MGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGS 231

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   +  M++ G   T  T N+LI+      ++ +A   +++    G  PD ITYN 
Sbjct: 232 IEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNT 291

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +NG C+  +   A  + D M+ +G  P + TY  ++  L K  ++ EA  +    + +G
Sbjct: 292 FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG 351

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPDI  FN LI   CT   +E A  L +++    V PD  T+N L++  C+ G    A 
Sbjct: 352 CLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLAL 411

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
           RL ++MK  G  PD +++N                             + +TYN +I GL
Sbjct: 412 RLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAESSN 318
           CK    + AEE+  +M  +GI+ +  T+ +LI+G+     +D A E  N
Sbjct: 472 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 160/306 (52%), Gaps = 10/306 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD YT+   ++ +CK G    A R+ E+MK +G  P  VTYNTLID  C+ G L  
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK 444

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M   G   +  TYN +I  L  + ++ EA+++  +M  +GI  ++IT+N LI+
Sbjct: 445 ALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+      AF L ++MI +G+QP  +TY S++    KQ  + +A  + E   A G   
Sbjct: 505 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +  LI+G C  G  + A  +L+ M    + P    YN ++    R+  + +A  L 
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLF 624

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYF 301
            +M   G  PD        LTY  + +GLC+   G + E  + + EMV KG  P+ +++ 
Sbjct: 625 REMAEVGEPPDA-------LTYKIVFRGLCRGG-GPIKEAFDFMLEMVDKGFIPEFSSFR 676

Query: 302 SLIEGI 307
            L EG+
Sbjct: 677 MLAEGL 682



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+Q D+  Y   ++ + +  +++    +  +M   G+ P  VT+NTL+   C    +  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM  +G+ P  +T+  L+   + E  +  A  +   M E G     +T N+LING
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G  + A     + I  G +P  +TY + +  L + + +  A ++ +  + +G  PD
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +++  C NG +E A  +L +M      PD  T+NTL+   C   ++EEA  L  
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           Q+  +G+ PD         T+N LI  LCK  +  LA  L  EM + G TPD+ TY +LI
Sbjct: 381 QVTVKGVSPD-------VYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 305 EGIASVDKAAES 316
           + + S+ K  ++
Sbjct: 434 DNLCSLGKLGKA 445



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 140/259 (54%), Gaps = 1/259 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY + +  +C  G+L +A  +L+ M+  G   + +TYNT+IDG C K  
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D+M  QGI   A T+N LI  L  ++K+ +A +++ +M  +G+ P++ITYN 
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ G+ KKA  + + M   G +  ++TY +LI  L K  R   A ++      KG
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M P    +N ++       NI  A SL +EM  +   PD +TY  +  G CR  G ++EA
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEA 656

Query: 240 RRLLDQMKRRGIKPDHISF 258
              + +M  +G  P+  SF
Sbjct: 657 FDFMLEMVDKGFIPEFSSF 675



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D  TYG+ ++G+CK GR + A ++L  M+  G+ PT   YN ++     + N
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYN 119
           +  A S   EM + G  P A TY ++   L      + EA D + EM +KG +P+  ++ 
Sbjct: 617 IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFR 676

Query: 120 ILINGYCRCG 129
           +L  G    G
Sbjct: 677 MLAEGLLNLG 686


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 164/304 (53%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++ V  D Y Y + ++  C+ G +  AS + ++   NG+ P   TY  LI+G+C  G 
Sbjct: 228 MKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQ 287

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     +M  +G+      +N +I     +  +  A  +   M + GI  D  TYN 
Sbjct: 288 MEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNT 347

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L  G CR     +A +L   MI KG+ P  +TYT+LI +  K+  M+EA +LF     KG
Sbjct: 348 LACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKG 407

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P +V +N ++DG+   G+I  A    KEM++  + PD  TY +L+HG C  GKV+ A 
Sbjct: 408 AMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVAL 467

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L ++MK RG +P+ ++       Y ALI GL K    + A +L  +M+  G+TPDD+ Y
Sbjct: 468 KLFEEMKHRGTEPNVVA-------YTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLY 520

Query: 301 FSLI 304
            +L+
Sbjct: 521 SALV 524



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 151/276 (54%), Gaps = 7/276 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P+  TYG  ++G CK G++E A  +L  M+  G+    + +NT+IDGYC +G ++ A
Sbjct: 267 GIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNA 326

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              +  M K GI     TYN L   L    +M EA  +L  M EKG+ P+ +TY  LI+ 
Sbjct: 327 LKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISI 386

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+  +A  L  EM  KG  P+++TY  ++    K+  + EA++  +    KG++PD
Sbjct: 387 HCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPD 446

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  + +L+ GHC NG ++ A  L +EM      P+ V Y  L+ G  ++G+ EEA +L D
Sbjct: 447 VYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYD 506

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            M + G+ PD          Y+AL+  L  +   D+
Sbjct: 507 DMLKAGLTPDDS-------LYSALVGSLHTDNRKDI 535



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 157/318 (49%), Gaps = 28/318 (8%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V G CK GR+++A  +L++M  +G+   A+ YN+L+D Y  + +        + M   GI
Sbjct: 139 VDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGGI 198

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
             T  TY +L+  L     + + + ++ EM  K +  D   Y  +IN YCR GN ++A  
Sbjct: 199 EATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASE 258

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           + DE +  GI+P   TY  LI    K  +M  A+ L  +   +G+  + ++FN +IDG+C
Sbjct: 259 VFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYC 318

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G ++ A  +   M++M +  D  TYNTL  G CR  ++ EA+ LL  M  +G+ P+++
Sbjct: 319 RQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYV 378

Query: 257 SFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREM 288
           ++                             P+ +TYN ++ G  K      AE   +EM
Sbjct: 379 TYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEM 438

Query: 289 VSKGITPDDNTYFSLIEG 306
             KG+ PD  TY SL+ G
Sbjct: 439 EKKGLVPDVYTYASLVHG 456



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 144/284 (50%), Gaps = 12/284 (4%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVT---YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           G+L +A+ +L   +  G  P +V+    + ++DG+C  G ++ A +  DEM + G+   A
Sbjct: 110 GQLADAAAILT--RALGSCPGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNA 167

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
             YN L+   +  +      ++L+ M   GI     TY IL++     G+  K  ++ DE
Sbjct: 168 LCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDE 227

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M  K +   +  YT++I    +   +  A ++F+  +  G+ P+   +  LI+G C  G 
Sbjct: 228 MKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQ 287

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E A  LL +M    V  +++ +NT++ G CRQG V+ A ++   M++ GI+ D      
Sbjct: 288 MEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELD------ 341

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
              TYN L  GLC+      A+ LL  M+ KG+ P+  TY +LI
Sbjct: 342 -VYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLI 384



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 97/165 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P+  TY + +S  CKEG + EA R+  +M   G +P+ VTYN ++DGY  KG+
Sbjct: 368 MIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGS 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  FR EM K+G++P   TY  L+H   +  K+  A  + +EM  +G  P+ + Y  
Sbjct: 428 IREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTA 487

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           LI+G  + G +++AF L+D+M+  G+ P    Y++L+  L   NR
Sbjct: 488 LISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNR 532


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 173/370 (46%), Gaps = 77/370 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV+P   TY S + G C++GR++EA ++  +M + G  P  VTY TL+ GY  K  
Sbjct: 421 MKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKA 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A++  +EM + G+     TYN+LI+ L M  ++ E D+MLK    +G VP ++TYN 
Sbjct: 481 FDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNS 540

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS-----------------LIFV---- 159
           +ING+ + G    AF ++ +M  KGI P ++TYTS                 LI+V    
Sbjct: 541 IINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDG 600

Query: 160 --------------LSKQNRMIEADQLFENFLAKGMLPDIVMFNA--------------- 190
                           KQ  M  A       L  G+ PD+ ++N+               
Sbjct: 601 IQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEAS 660

Query: 191 --------------------LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
                               LIDG    GN+  A  L  EM    V PD+ T+  L HG 
Sbjct: 661 KFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGL 720

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           CR G ++ A+RLLD M+R  + P+ +       TYN LI    ++ +   A +L  EM+S
Sbjct: 721 CRSGDIDGAKRLLDDMRRLDVSPNIV-------TYNMLINACVRDGKLQEAFQLHDEMLS 773

Query: 291 KGITPDDNTY 300
            G+ PDD TY
Sbjct: 774 SGVVPDDTTY 783



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 158/336 (47%), Gaps = 44/336 (13%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD +TYG  +  +CK  +L EA  + ++MKE G+ P+ VTY++L+ GYC KG ++ A   
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452

Query: 68  RDEMVKQGIMPTAS-----------------------------------TYNLLIHELLM 92
             EM  +G  P                                      TYN+LI+ L M
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYM 512

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
             ++ E D+MLK    +G VP ++TYN +ING+ + G    AF ++ +M  KGI P ++T
Sbjct: 513 VNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVT 572

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           YTS I    + N    A +L       G+ PDI  +NA ID  C  GN+ RA   L  + 
Sbjct: 573 YTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLL 632

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM-KRRGIKPDHISFNPTRLTYNALIQG 271
           +  + PD   YN+ + G      + EA +    M K+R +    I        Y  LI G
Sbjct: 633 KDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEI--------YTTLIDG 684

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             K      A EL  EM++  + PDD T+ +L  G+
Sbjct: 685 FSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGL 720



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 163/317 (51%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P +Y +   + G+ ++ R ++A  +L+ + + G VP   TY  LI   C    
Sbjct: 352 MIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTG-VPDVFTYGCLIHWLCKHQK 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +  D+M + G+ P+  TY+ L+     + +M EA  +  EM +KG  P+ +TY  
Sbjct: 411 LHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTT 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY +      A++L +EM   G+     TY  LI  L   NR+ E D++ + FL++G
Sbjct: 471 LMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEG 530

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N++I+G    G +  AF + ++M +  + P+ VTY + + G CR    + A 
Sbjct: 531 FVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAV 590

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  ++R GI+PD  +       YNA I   CK      A   L  ++  G+TPD   Y
Sbjct: 591 KLLIYVRRDGIQPDIAA-------YNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVY 643

Query: 301 FSLIEGIASVDKAAESS 317
            S + G  ++   AE+S
Sbjct: 644 NSFVTGYKNLKMMAEAS 660



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 167/370 (45%), Gaps = 65/370 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLID------- 53
           M   GV+PD   Y   +SG+CK    + A ++L +M+E G  P  +TY++++D       
Sbjct: 211 MAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRR 270

Query: 54  -----------------------------GYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
                                        GYC  G +  A    DE+V  G+ PT  TY 
Sbjct: 271 MDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYG 330

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +LI     E    E   + ++M E+G++P +  +N++I G  R    K A  L   ++  
Sbjct: 331 VLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDT 390

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+ P + TY  LI  L K  ++ EA  L++     G+ P IV +++L+ G+C  G ++ A
Sbjct: 391 GV-PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEA 449

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----- 259
             L  EM      P+EVTY TLM G  ++   + A  LL++M++ G+     ++N     
Sbjct: 450 LKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILING 509

Query: 260 -----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                  PT +TYN++I G  K      A  + R+M  KGITP+
Sbjct: 510 LYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPN 569

Query: 297 DNTYFSLIEG 306
             TY S I+G
Sbjct: 570 IVTYTSFIDG 579



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 129/257 (50%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G  P + TY S ++G  K G +  A  M  QM++ G+ P  VTY + IDGYC     +
Sbjct: 528 SEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCD 587

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           +A      + + GI P  + YN  I     +  M  A   L  + + G+ PD   YN  +
Sbjct: 588 LAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFV 647

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            GY       +A   +  MI + +      YT+LI   SK   +  A +L+   +A  ++
Sbjct: 648 TGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVI 707

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD   F AL  G C +G+I+ A  LL +M R+ V P+ VTYN L++   R GK++EA +L
Sbjct: 708 PDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQL 767

Query: 243 LDQMKRRGIKPDHISFN 259
            D+M   G+ PD  +++
Sbjct: 768 HDEMLSSGVVPDDTTYD 784



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 149/310 (48%), Gaps = 15/310 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G   D+  Y   +    + G   +A R+ ++M   G+ P    Y   I G C   +
Sbjct: 176 MRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRD 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA----DDMLKEMGEKGIVPDSI 116
            + A     +M + G  P   TY+ ++  L+  R+M EA    D ML   G+K    D +
Sbjct: 236 ADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGKKM---DVV 292

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
              +L++GYC  G   KA  L DE++  G+ PT +TY  LI     +    E  +L    
Sbjct: 293 LATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQM 352

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           + +G+LP    FN +I G   +   + A  LLK +    V PD  TY  L+H  C+  K+
Sbjct: 353 IEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGV-PDVFTYGCLIHWLCKHQKL 411

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA  L D+MK  G+KP  +       TY++L+ G C+    D A +L  EM  KG  P+
Sbjct: 412 HEAVNLWDKMKEAGVKPSIV-------TYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPN 464

Query: 297 DNTYFSLIEG 306
           + TY +L++G
Sbjct: 465 EVTYTTLMKG 474



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P+  TY SF+ G C+    + A ++L  ++ +G+ P    YN  ID +C +GN
Sbjct: 561 MRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGN 620

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F   ++K G+ P  + YN  +      + M EA      M ++ +V D+  Y  
Sbjct: 621 MSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTT 680

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN   A  L+ EM+   + P   T+T+L   L +   +  A +L ++     
Sbjct: 681 LIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLD 740

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
           + P+IV +N LI+    +G ++ AF L  EM    V PD+ TY+ L
Sbjct: 741 VSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 134/301 (44%), Gaps = 28/301 (9%)

Query: 34  EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
            +M   G+VP A +   L+       +   A +  DEM  +G    A  Y+++I   +  
Sbjct: 139 SRMVTRGVVPDAKSRTDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRG 198

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
               +A  +  EM   G+ PD   Y I I+G C+  +A +A  +  +M   G +P  LTY
Sbjct: 199 GMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTY 258

Query: 154 TSLIFVLSKQNRMIEADQLFEN-FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           +S++ VL K  RM EA +L +   LA G   D+V+   L+ G+C NG + +A  L  E+ 
Sbjct: 259 SSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEVV 318

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------- 259
              V P  VTY  L+ G   +G  +E  +L  QM  +G+ P    FN             
Sbjct: 319 SDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWK 378

Query: 260 --------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                         P   TY  LI  LCK+Q+   A  L  +M   G+ P   TY SL+ 
Sbjct: 379 DAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLL 438

Query: 306 G 306
           G
Sbjct: 439 G 439


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 156/306 (50%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ PD  TY S ++G CK G  +EA  +   ++  GL PT +TYN LIDGYC  G+
Sbjct: 363 MRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A   ++EMV+QG +P   TY +L+        +    +   EM  KG+ PD   YN 
Sbjct: 423 LEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNT 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I      G+  K+F L + ++ +GI    +TY  LI  L K   + +A++L    ++ G
Sbjct: 483 RICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNG 542

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +  LI  HC  G +  A     +M    + P  VTY  ++H  CR+G +  A 
Sbjct: 543 LQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAY 602

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M   G++P+ I       TYN LI  LC+     LA     EM+ +G+ P+  TY
Sbjct: 603 GWFRKMLEEGVEPNEI-------TYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTY 655

Query: 301 FSLIEG 306
             LI+G
Sbjct: 656 TLLIDG 661



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 1   MKSRGVQ--PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           M++RG    P+  TY   ++G+ ++G LEEA+ ++E+M+ +    ++ TYN LI G   +
Sbjct: 257 MEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKA-SSFTYNPLITGLLAR 315

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G ++     + EM  +GIMPT  TYN +IH LL   ++  A     EM   G++PD ITY
Sbjct: 316 GFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITY 375

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N L+NGYC+ GN K+A  L  ++   G+ PT+LTY  LI    +   + EA +L E  + 
Sbjct: 376 NSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVE 435

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G LPD+  +  L+ G     ++        EM    + PD   YNT +      G + +
Sbjct: 436 QGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISK 495

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           + +L + +   GI  D +       TYN LI GLCK      AEEL+ +M+S G+ PD  
Sbjct: 496 SFQLREVIMLEGISSDTV-------TYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCI 548

Query: 299 TYFSLIEG 306
           TY  LI  
Sbjct: 549 TYTCLIHA 556



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 122/265 (46%), Gaps = 35/265 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G+ P   TY   + G C+ G LEEA R+ E+M E G +P   TY  L+ G  N  +
Sbjct: 398 LRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCS 457

Query: 61  LEMAFSFRDEMVKQGIMPTA-----------------------------------STYNL 85
           L M   F DEM+ +G+ P                                      TYN+
Sbjct: 458 LAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNI 517

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L     + +A++++ +M   G+ PD ITY  LI+ +C  G  ++A    ++MI  G
Sbjct: 518 LIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDG 577

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P+ +TYT +I    ++  +  A   F   L +G+ P+ + +N LI   C  G  + A+
Sbjct: 578 LPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAY 637

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGR 230
               EM    + P++ TY  L+ G+
Sbjct: 638 RHFYEMLERGLVPNKYTYTLLIDGK 662



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 10/216 (4%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
            +EM   G+ PD    N ++             ++H EM+  GI+P+++TY +L+   SK
Sbjct: 184 FREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSK 243

Query: 163 QNRMIEADQLFENFLAKG--MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
           + R  + D L +   A+G   LP+ V +N +I G    G +E A  L++EM R+      
Sbjct: 244 EGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEM-RLSKKASS 302

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TYN L+ G   +G V++   L  +M+  GI P       T +TYNA+I GL ++ + + 
Sbjct: 303 FTYNPLITGLLARGFVKKVDDLQLEMENEGIMP-------TVVTYNAMIHGLLQSGQIEA 355

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           A+    EM + G+ PD  TY SL+ G        E+
Sbjct: 356 AQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEA 391



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            S  +EM    V PD    N ++       + ++   +  +M + GI+P  +       T
Sbjct: 181 LSAFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIV-------T 233

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGIT--PDDNTYFSLIEGIA 308
           YN L+    K    D  + LL+EM ++G +  P+D TY  +I G+A
Sbjct: 234 YNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLA 279


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+++TYG+F+SG  +      A + +++M+E G++P  V    LI+ YC K  
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEK 572

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    MV QGI+  A TY +L++ L    K+ +A+++ +EM  KGI PD  +Y +
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+ + GN +KA S+ DEM+ +G+ P ++ Y  L+    +   + +A +L +    KG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  +IDG+C +G++  AF L  EM    + PD   Y TL+ G CR   VE A 
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 752

Query: 241 RLLDQMKRRGIKPDHISFN--------------------------------PTRLTYNAL 268
            +     ++G       FN                                P  +TYN +
Sbjct: 753 TIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           I  LCK    + A+EL  +M +  + P   TY SL+ G   + + AE
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAE 858



 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 169/308 (54%), Gaps = 11/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+   Y + +    +  R  +A R+L++MKE G+ P    YN+LI G      
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A SF  EMV+ G+ P A TY   I   +   +   AD  +KEM E G++P+ +    
Sbjct: 503 MDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTG 562

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+     +A S +  M+ +GI     TYT L+  L K +++ +A+++F     KG
Sbjct: 563 LINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG 622

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  LI+G    GN+++A S+  EM    + P+ + YN L+ G CR G++E+A+
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LLD+M  +G+ P+ +       TY  +I G CK+  GDLAE   L  EM  KG+ PD  
Sbjct: 683 ELLDEMSVKGLHPNAV-------TYCTIIDGYCKS--GDLAEAFRLFDEMKLKGLVPDSF 733

Query: 299 TYFSLIEG 306
            Y +L++G
Sbjct: 734 VYTTLVDG 741



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 97/274 (35%), Positives = 149/274 (54%), Gaps = 7/274 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD + Y S + G+ K  R++EA   L +M ENGL P A TY   I GY     
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  +  EM + G++P       LI+E   + K++EA    + M ++GI+ D+ TY +
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTV 597

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG  +      A  +  EM  KGI P + +Y  LI   SK   M +A  +F+  + +G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++++N L+ G C +G IE+A  LL EM    +HP+ VTY T++ G C+ G + EA 
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           RL D+MK +G+ PD          Y  L+ G C+
Sbjct: 718 RLFDEMKLKGLVPDS-------FVYTTLVDGCCR 744



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 164/344 (47%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P +  Y S + G C+E  + +   +L +MK+  +V +  TY T++ G C+ G+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A++   EM+  G  P    Y  LI   L   +  +A  +LKEM E+GI PD   YN 
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G  +     +A S   EM+  G++P   TY + I    + +    AD+  +     G
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG 552

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V+   LI+ +C    +  A S  + M    +  D  TY  LM+G  +  KV++A 
Sbjct: 553 VLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            +  +M+ +GI PD  S+                             P  + YN L+ G 
Sbjct: 613 EIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C++ E + A+ELL EM  KG+ P+  TY ++I+G       AE+
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 159/341 (46%), Gaps = 38/341 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD ++YG  ++G  K G +++AS + ++M E GL P  + YN L+ G+C  G 
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM  +G+ P A TY  +I        + EA  +  EM  KG+VPDS  Y  
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEA-DQLFENF 176
           L++G CR  + ++A ++      KG   +   + +LI   F   K     E  ++L +  
Sbjct: 738 LVDGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGS 796

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +   P+ V +N +ID  C  GN+E A  L  +M    + P  +TY +L++G  + G+ 
Sbjct: 797 FDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRR 856

Query: 237 EEARRLLDQMKRRGIKPDHISFNP---------------------------------TRL 263
            E   + D+    GI+PDHI ++                                  +  
Sbjct: 857 AEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSIS 916

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           T  AL+ G  K  E ++AE+++  MV     PD  T   LI
Sbjct: 917 TCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 28/322 (8%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM------------ 63
            +  + +  RL+    + + M E  +V    TY+ LI  +C  GN+++            
Sbjct: 192 LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEF 251

Query: 64  ---------AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
                    A   ++ M+ +G++P   TY++LI  L   +++ +A  +L EM   G+  D
Sbjct: 252 RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLD 311

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           + TY++LI+G  +  NA  A  L  EM+  GI      Y   I V+SK+  M +A  LF+
Sbjct: 312 NHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFD 371

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             +A G++P    + +LI+G+C   N+ + + LL EM +  +     TY T++ G C  G
Sbjct: 372 GMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            ++ A  ++ +M   G +P+ +        Y  LI+   +N     A  +L+EM  +GI 
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVV-------IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           PD   Y SLI G++   +  E+
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEA 506



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 149/319 (46%), Gaps = 7/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P  YTY   + G+CK  RLE+A  +L +M   G+     TY+ LIDG     N
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EMV  GI      Y+  I  +  E  M +A  +   M   G++P +  Y  
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYCR  N ++ + L  EM  + I  +  TY +++  +     +  A  + +  +A G
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V++  LI     N     A  +LKEM    + PD   YN+L+ G  +  +++EAR
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEAR 507

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M   G+KP+         TY A I G  +  E   A++ ++EM   G+ P+    
Sbjct: 508 SFLVEMVENGLKPNA-------FTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560

Query: 301 FSLIEGIASVDKAAESSNS 319
             LI      +K  E+ ++
Sbjct: 561 TGLINEYCKKEKVIEACSA 579



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 149/343 (43%), Gaps = 53/343 (15%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------------VTY 48
           DS+++ +    +C  G  E+A  ++E+M E    P A                    V +
Sbjct: 98  DSFSFLAL--DLCNFGSFEKALSVVERMIERNW-PVAEVWSSIVRCSQEFVGKSDDGVLF 154

Query: 49  NTLIDGYCNKGNLEMA-FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
             L DGY  KG +E A F F   M  + ++P  S   +L+  LL   ++    D+ K M 
Sbjct: 155 GILFDGYIAKGYIEEAVFVFSSSMGLE-LVPRLSRCKVLLDALLRWNRLDLFWDVYKGMV 213

Query: 108 EKGIVPDSITYNILINGYCRCGNAK---------------------KAFSLHDEMIHKGI 146
           E+ +V D  TY++LI  +CR GN +                      A  L + MI KG+
Sbjct: 214 ERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGL 273

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P   TY  LI  L K  R+ +A  L     + G+  D   ++ LIDG     N + A  
Sbjct: 274 VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKG 333

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L+ EM    ++     Y+  +    ++G +E+A+ L D M   G+ P   +       Y 
Sbjct: 334 LVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA-------YA 386

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           +LI+G C+ +      ELL EM  + I     TY ++++G+ S
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS 429



 Score = 94.0 bits (232), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 109/278 (39%), Gaps = 78/278 (28%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P++ TY + + G CK G L EA R+ ++MK  GLVP +  Y TL+DG C   +
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747

Query: 61  LEMA-------------------------FSFRDEMVKQGIM-------------PTAST 82
           +E A                         F F    +K  ++             P   T
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           YN++I  L  E  +  A ++  +M    ++P  ITY  L+NGY + G   + F + DE I
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEA----DQLF------------------------- 173
             GI+P  + Y+ +I    K+    +A    DQ+F                         
Sbjct: 868 AAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927

Query: 174 -----------ENFLAKGMLPDIVMFNALIDGHCTNGN 200
                      EN +    +PD      LI+  C + N
Sbjct: 928 VGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TY   +  +CKEG LE A  +  QM+   L+PT +TY +L++GY   G     F 
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI-----L 121
             DE +  GI P    Y+++I+  L E    +A  ++ +M  K  V D    +I     L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF-VLSKQNRMIEADQL 172
           ++G+ + G  + A  + + M+     P   T   LI       N+ +EAD +
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 44/223 (19%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-----FVLSKQNRMIEADQ 171
           +++ L    C  G+ +KA S+ + MI +   P    ++S++     FV  K +  +    
Sbjct: 99  SFSFLALDLCNFGSFEKALSVVERMIERN-WPVAEVWSSIVRCSQEFV-GKSDDGVLFGI 156

Query: 172 LFENFLAKG----------------MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           LF+ ++AKG                ++P +     L+D       ++  + + K M    
Sbjct: 157 LFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERN 216

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           V  D  TY+ L+   CR G V+  + +L + ++         F    L           N
Sbjct: 217 VVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKE--------FRTATL-----------N 257

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            +G L  +L   M+ KG+ P   TY  LI+G+  + +  ++ +
Sbjct: 258 VDGAL--KLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKS 298


>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 755

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 166/302 (54%), Gaps = 7/302 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++P+ + Y SF+S +C  G +  AS + +++ E GL+P    Y T+IDGYC  G  + AF
Sbjct: 436 LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAF 495

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F   ++K G  P+  TY LLI        + +A+ + + M  +G+ PD +TYN L+ GY
Sbjct: 496 QFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGY 555

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            +     K F L DEM   GI P + TY  LI  +  +  + EA+++    + +G +P  
Sbjct: 556 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSA 615

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + F  +I G    G+ + AF L   M  ++V PD VT + L+HG CR  ++E+A  L D+
Sbjct: 616 LAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDK 675

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +   G+KPD +        YN LI G C   + + A EL+  MV +G+ P+++T+ +L+ 
Sbjct: 676 LLDAGLKPDVV-------LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVV 728

Query: 306 GI 307
           G+
Sbjct: 729 GL 730



 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 170/350 (48%), Gaps = 42/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G++PD   +  F+  +CK G L EA+ +L ++K  G+   +V+ +++IDG+C  G 
Sbjct: 364 MKDYGIRPDIVAFTVFIDKLCKAGFLREATSVLFKLKLFGISQDSVSVSSVIDGFCKVGK 423

Query: 61  LEMAF----SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
            E A     SFR       + P    Y+  +  +     M+ A  + +E+ E G++PD  
Sbjct: 424 PEEAIKLIHSFR-------LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCY 476

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            Y  +I+GYC  G   KAF     ++  G  P+++TYT LI   SK   + +A+ +F   
Sbjct: 477 CYTTMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIM 536

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +G+ PD+V +N L+ G+     + + F L+ EM    + PD  TYN L+H    +G V
Sbjct: 537 KTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYV 596

Query: 237 EEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNAL 268
           +EA  ++ ++ RRG  P  ++F                             P  +T +AL
Sbjct: 597 DEANEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSAL 656

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV---DKAAE 315
           + G C+ Q  + A  L  +++  G+ PD   Y +LI G  SV   +KA E
Sbjct: 657 LHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACE 706



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   TY   +    K G + +A  +   MK  GL P  VTYN L+ GY     L   
Sbjct: 505 GNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNKV 564

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   DEM   GI P  +TYN+LIH +++   + EA++++ E+  +G VP ++ +  +I G
Sbjct: 565 FELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGG 624

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             + G+ ++AF L   M    ++P ++T ++L+    +  RM +A  LF+  L  G+ PD
Sbjct: 625 LSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPD 684

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           +V++N LI G+C+ G+IE+A  L+  M +  + P+E T++ L+ G
Sbjct: 685 VVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVVG 729



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 147/316 (46%), Gaps = 17/316 (5%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P      S V  + +   LE A   +E M   G    A   +  I  YC+ G  +  
Sbjct: 298 GIFPSRGVCISLVEEILRAHGLELAREFVEHMLSRGRHLNAALLSLFIRKYCSDGYFDKG 357

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +     M   GI P    + + I +L     + EA  +L ++   GI  DS++ + +I+G
Sbjct: 358 WELLMGMKDYGIRPDIVAFTVFIDKLCKAGFLREATSVLFKLKLFGISQDSVSVSSVIDG 417

Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           +C+ G  ++A  L    IH   ++P +  Y+S +  +     M+ A  +F+     G+LP
Sbjct: 418 FCKVGKPEEAIKL----IHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLP 473

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ-GKVEEARRL 242
           D   +  +IDG+CT G  ++AF     + +    P  +TY TL+ G C + G + +A  +
Sbjct: 474 DCYCYTTMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITY-TLLIGACSKFGSISDAESV 532

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              MK  G+ PD +       TYN L+ G  K  + +   EL+ EM S GI+PD  TY  
Sbjct: 533 FRIMKTEGLHPDVV-------TYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNI 585

Query: 303 LIEGIAS---VDKAAE 315
           LI  +     VD+A E
Sbjct: 586 LIHSMVVRGYVDEANE 601


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 164/316 (51%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   + + Y   + G+CKEGR+ +A  +L++M   G+VP+  TYN +IDGYC  G 
Sbjct: 275 MVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGR 334

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   +  M + G  P   TYN LI+ L    K+ EA+++L     +G  P  IT+  
Sbjct: 335 MKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARGFTPTVITFTN 393

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+      A  +   MI    +  +  Y  LI VL K+ R+ EA +      A G
Sbjct: 394 LINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG 453

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V++ ++IDG+C  G +  A  + K M+    HP+  TY +L++G  +  K+ +A 
Sbjct: 454 LAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAM 513

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M+  GI P  I+       Y  LIQG CK  E D A  L   M   G+TPD+  Y
Sbjct: 514 ALITKMQEDGITPGVIA-------YTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAY 566

Query: 301 FSLIEGIASVDKAAES 316
             L + +    +A E+
Sbjct: 567 NVLTDALCKSGRAEEA 582



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY S + G+C  G+L+EA  +L      G  PT +T+  LI+GYC    
Sbjct: 345 MEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAER 403

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   +  M+          Y +LI+ L+ + ++ EA + L EM   G+ P+ + Y  
Sbjct: 404 IDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTS 463

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G    A  +   M H+G  P   TY SLI+ L +  ++ +A  L       G
Sbjct: 464 IIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDG 523

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ +  LI G C     + AF L + M++  + PDE  YN L    C+ G+ EEA 
Sbjct: 524 ITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAY 583

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L    R+G+         T++TY +L+ G  K    D A  L+ +MV++G   D  TY
Sbjct: 584 SFL---VRKGVV-------LTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTY 633

Query: 301 FSLIEGIASVDKAAES 316
             L++ +    K  E+
Sbjct: 634 SVLLQALCKQKKLNEA 649



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 154/318 (48%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S   + D   YG  ++ + K+ RL+EA   L +M  NGL P  V Y ++IDGYC  G 
Sbjct: 414 MISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGM 473

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +G  P A TY  LI+ L+ ++K+ +A  ++ +M E GI P  I Y  
Sbjct: 474 VGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTT 533

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+      AF L + M   G+ P    Y  L   L K  R   A++ +   + KG
Sbjct: 534 LIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGR---AEEAYSFLVRKG 590

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++   V + +L+DG    GN + A  L+++M       D  TY+ L+   C+Q K+ EA 
Sbjct: 591 VVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEAL 650

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LDQM   G+K + ++       Y  +I  + K  + D A+ L  EM+S G  P   TY
Sbjct: 651 SILDQMTVSGVKCNIVA-------YTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTY 703

Query: 301 FSLIEGIASVDKAAESSN 318
              I     + +  E+ +
Sbjct: 704 TVFISSYCKIGQIEEAEH 721



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 158/321 (49%), Gaps = 26/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD   Y      +CK GR EEA   L +    G+V T VTY +L+DG+   GN
Sbjct: 554 MEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVR---KGVVLTKVTYTSLVDGFSKAGN 610

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    ++MV +G      TY++L+  L  ++K+ EA  +L +M   G+  + + Y I
Sbjct: 611 TDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTI 670

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   + G    A SL +EMI  G +P+  TYT  I    K  ++ EA+ L       G
Sbjct: 671 IISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG 730

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM------------- 227
           + PD+V ++  I+G    G ++RAFS LK M      P+  TY  L+             
Sbjct: 731 VTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHY 790

Query: 228 ---HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
               G     ++    +LL++M + G+       NPT +TY+++I G CK    + A  L
Sbjct: 791 IDTSGMWNWIELNTVWQLLERMMKHGL-------NPTVVTYSSIIAGFCKATRLEEACVL 843

Query: 285 LREMVSKGITPDDNTYFSLIE 305
           L  M+ K I+P++  Y  LI+
Sbjct: 844 LDHMLGKAISPNEEIYTMLIK 864



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 153/338 (45%), Gaps = 43/338 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+ TY + +   CK+G L  A R    ++E+G+     T N L+ GYC   +L  A
Sbjct: 174 GLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKA 233

Query: 65  FSF----------RDE-------------------------MVKQGIMPTASTYNLLIHE 89
                        R+E                         MV+ G       Y LLI  
Sbjct: 234 CWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKG 293

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
           L  E ++ +A  +L EM  +G+VP   TYN +I+GYC+ G  K A  +   M   G  P 
Sbjct: 294 LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPD 353

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY SLI+ L    ++ EA++L    +A+G  P ++ F  LI+G+C    I+ A  +  
Sbjct: 354 DWTYNSLIYGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKS 412

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M       D   Y  L++   ++ +++EA+  L++M   G+ P+ +        Y ++I
Sbjct: 413 NMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVV-------IYTSII 465

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            G CK      A E+ + M  +G  P+  TY SLI G+
Sbjct: 466 DGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 138/278 (49%), Gaps = 8/278 (2%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           E   ++   + + GL+P  VTYNT+I  YC KG+L +A  +   + + G+     T N L
Sbjct: 161 EYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNAL 220

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           +        + +A  +L  M   G   +  +Y ILI G       ++A  L   M+  G 
Sbjct: 221 LLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGC 280

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
              +  YT LI  L K+ R+ +A  L +    +G++P +  +NA+IDG+C +G ++ A  
Sbjct: 281 SLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALG 340

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           +   M++   +PD+ TYN+L++G C  GK++EA  LL+    RG       F PT +T+ 
Sbjct: 341 IKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARG-------FTPTVITFT 392

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            LI G CK +  D A  +   M+S     D   Y  LI
Sbjct: 393 NLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLI 430



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 149/358 (41%), Gaps = 58/358 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D YTY   +  +CK+ +L EA  +L+QM  +G+    V Y  +I     +G 
Sbjct: 621 MVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  +EM+  G  P+A+TY + I       ++ EA+ ++ EM   G+ PD +TY+I
Sbjct: 681 HDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHI 740

Query: 121 LINGYCRCGNAKKAFS-------------------------------------------- 136
            ING    G   +AFS                                            
Sbjct: 741 FINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWI 800

Query: 137 -------LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                  L + M+  G+ PT++TY+S+I    K  R+ EA  L ++ L K + P+  ++ 
Sbjct: 801 ELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYT 860

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI   C      +  S + +M      P   +Y+ L+ G C +G  + A+ L   +   
Sbjct: 861 MLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLL-- 918

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                 + +N   + +  L  GL K    D   +LL  M ++    D  +Y  L + I
Sbjct: 919 -----GMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 8/243 (3%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
            +V++G++P   TYN +I     +  +  A      + E G+  D+ T N L+ GYCR  
Sbjct: 169 HLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTS 228

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           + +KA  L   M   G +    +YT LI  L +   + EA  L    +  G   ++ M+ 
Sbjct: 229 DLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYT 288

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI G C  G I  A  LL EM    V P   TYN ++ G C+ G++++A  +   M++ 
Sbjct: 289 LLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQN 348

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           G  PD         TYN+LI GLC  +  D AEELL   +++G TP   T+ +LI G   
Sbjct: 349 GCNPDD-------WTYNSLIYGLCGGKL-DEAEELLNGAIARGFTPTVITFTNLINGYCK 400

Query: 310 VDK 312
            ++
Sbjct: 401 AER 403



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 44/262 (16%)

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           R+ V+A   ++ +G K +V     YN+ +    R    +    L+  ++ +G+ P  +TY
Sbjct: 123 REAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTY 182

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
            ++I    K+  +  A + F      GM  D    NAL+ G+C   ++ +A  LL  M  
Sbjct: 183 NTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPL 242

Query: 214 MKVHPDEVTYNTLMH-----------------------------------GRCRQGKVEE 238
           M    +E +Y  L+                                    G C++G++ +
Sbjct: 243 MGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHD 302

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR LLD+M  RG+        P+  TYNA+I G CK+     A  +   M   G  PDD 
Sbjct: 303 ARGLLDEMPLRGVV-------PSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDW 355

Query: 299 TYFSLIEGIAS--VDKAAESSN 318
           TY SLI G+    +D+A E  N
Sbjct: 356 TYNSLIYGLCGGKLDEAEELLN 377


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 170/337 (50%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +PD  TY S + G CK+G +++A+R+L+     G  P   TY +LI+G+C  G+
Sbjct: 286 MVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGD 345

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   + + +G+ P+   YN LI  L  +  ++ A  ++ EM E G +P+  TYN+
Sbjct: 346 PDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNL 405

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G    A  L D+ I KG  P + TY +LI    KQ ++  A ++     ++G
Sbjct: 406 VINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQG 465

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD++ +N L++G C  G  E    + K M+     P+ +TYN ++   C+  KV EA 
Sbjct: 466 MTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAV 525

Query: 241 RLLDQMKRRGIKPDHISFNP-----------------------------TRLTYNALIQG 271
            LL +MK +G+KPD +SF                               T  TYN ++  
Sbjct: 526 DLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSA 585

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             +    ++A +L   M + G  PD+ TY  +I+G  
Sbjct: 586 FSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFC 622



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 164/316 (51%), Gaps = 16/316 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEG---------RLEEASRMLEQMKENGLVPTAVTYNTLIDG 54
           RGV P+ +T+  FV G+C+EG         R+ EA   L +M   G  P  +TYN++IDG
Sbjct: 245 RGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDG 304

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           YC KG ++ A     + V +G  P   TY  LI+    +     A  + K+   KG+ P 
Sbjct: 305 YCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPS 364

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            + YN LI G  + G    A  L +EM   G  P + TY  +I  L K   + +A  L +
Sbjct: 365 IVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVD 424

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           + +AKG  PDI  +N LIDG+C    ++ A  ++  M    + PD +TYNTL++G C+ G
Sbjct: 425 DAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAG 484

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           K EE   +   M+ +G  P+ I       TYN ++  LCK ++ + A +LL EM SKG+ 
Sbjct: 485 KSEEVMEIFKAMEEKGCTPNII-------TYNIIVDSLCKAKKVNEAVDLLGEMKSKGLK 537

Query: 295 PDDNTYFSLIEGIASV 310
           PD  ++ +L  G   +
Sbjct: 538 PDVVSFGTLFTGFCKI 553



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 168/359 (46%), Gaps = 51/359 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RGVQ D YTY   +   CK  R   A R+L  M E G    AV Y T++ G  + G 
Sbjct: 137 MRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGE 196

Query: 61  LEMAFSFRDEMV-----------------------------------KQGIMPTASTYNL 85
            + A    DEM+                                   K+G+ P   T+N+
Sbjct: 197 HDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNI 256

Query: 86  LIHELLME---------RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
            +  L  E          ++VEA++ L++M   G  PD +TYN +I+GYC+ G  + A  
Sbjct: 257 FVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANR 316

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           +  + + KG +P   TY SLI    K      A  +F++ L KG+ P IV++N LI G  
Sbjct: 317 VLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLS 376

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G I  A  L+ EM      P+  TYN +++G C+ G V +A  L+D    +G  PD  
Sbjct: 377 QQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPD-- 434

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
                  TYN LI G CK  + D A E++  M S+G+TPD  TY +L+ G+    K+ E
Sbjct: 435 -----IFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEE 488



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 172/325 (52%), Gaps = 16/325 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R + PD   +   V  +CK+G + E+ R+L ++ + G+ P   T+N  + G C +G 
Sbjct: 207 MLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGA 266

Query: 61  LEMAF---------SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI 111
           L+ A           +  +MV  G  P   TYN +I     +  + +A+ +LK+   KG 
Sbjct: 267 LDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGF 326

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
            PD  TY  LING+C+ G+  +A ++  + + KG++P+++ Y +LI  LS+Q  ++ A Q
Sbjct: 327 KPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQ 386

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L       G LP+I  +N +I+G C  G +  A  L+ +       PD  TYNTL+ G C
Sbjct: 387 LMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYC 446

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           +Q K++ A  ++++M  +G+ PD I       TYN L+ GLCK  + +   E+ + M  K
Sbjct: 447 KQLKLDSATEMVNRMWSQGMTPDVI-------TYNTLLNGLCKAGKSEEVMEIFKAMEEK 499

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G TP+  TY  +++ +    K  E+
Sbjct: 500 GCTPNIITYNIIVDSLCKAKKVNEA 524



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 154/314 (49%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++P    Y + + G+ ++G +  A +++ +M ENG +P   TYN +I+G C  G +  
Sbjct: 359 KGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSD 418

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    D+ + +G  P   TYN LI     + K+  A +M+  M  +G+ PD ITYN L+N
Sbjct: 419 ASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLN 478

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G +++   +   M  KG  P ++TY  ++  L K  ++ EA  L     +KG+ P
Sbjct: 479 GLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKP 538

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           D+V F  L  G C  G+I+ A+ L + M++   V     TYN ++     Q  +  A +L
Sbjct: 539 DVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKL 598

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              MK  G  PD+        TY  +I G CK        + L E + K   P   T+  
Sbjct: 599 FSVMKNSGCDPDN-------YTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGR 651

Query: 303 LIEGIASVDKAAES 316
           ++  +   DK  E+
Sbjct: 652 VLNCLCVKDKVHEA 665



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 134/256 (52%), Gaps = 1/256 (0%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G  PD +TY + + G CK+ +L+ A+ M+ +M   G+ P  +TYNTL++G C  G  E
Sbjct: 428 AKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSE 487

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                   M ++G  P   TYN+++  L   +K+ EA D+L EM  KG+ PD +++  L 
Sbjct: 488 EVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLF 547

Query: 123 NGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            G+C+ G+   A+ L   M  +  +  T  TY  ++   S+Q  M  A +LF      G 
Sbjct: 548 TGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGC 607

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD   +  +IDG C  GNI + +  L E    +  P   T+  +++  C + KV EA  
Sbjct: 608 DPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVG 667

Query: 242 LLDQMKRRGIKPDHIS 257
           ++  M ++GI P+ ++
Sbjct: 668 IIHLMLQKGIVPETVN 683



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 143/316 (45%), Gaps = 21/316 (6%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG---YCNKGNL 61
           G +  + TY   V  +   G  EE  ++L +M+EN  V  A+     I+    Y  KG +
Sbjct: 35  GFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMREN--VNNALLEGAYIEAMKNYGRKGKV 92

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A    + M      P+  ++N +++ L+      +A  +   M ++G+  D  TY I 
Sbjct: 93  QEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIR 152

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I  +C+      A  L   M   G     + Y +++  L        A +LF+  LA+ +
Sbjct: 153 IKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCL 212

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG------- 234
            PD+V FN L+   C  G +  +  LL ++ +  V P+  T+N  + G CR+G       
Sbjct: 213 CPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVR 272

Query: 235 --KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
             +V EA   L +M   G +PD        LTYN++I G CK      A  +L++ V KG
Sbjct: 273 NSRVVEAEEYLRKMVNGGFEPDD-------LTYNSIIDGYCKKGMVQDANRVLKDAVFKG 325

Query: 293 ITPDDNTYFSLIEGIA 308
             PD+ TY SLI G  
Sbjct: 326 FKPDEFTYCSLINGFC 341



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  P+  TY   V  +CK  ++ EA  +L +MK  GL P  V++ TL  G+C  G+
Sbjct: 496 MEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGD 555

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           ++ A+     M KQ  +  T +TYN+++     +  M  A  +   M   G  PD+ TY 
Sbjct: 556 IDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYR 615

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ++I+G+C+ GN  + +    E + K   P++ T+  ++  L  ++++ EA  +    L K
Sbjct: 616 VVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQK 675

Query: 180 GMLPDIV 186
           G++P+ V
Sbjct: 676 GIVPETV 682



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 130/293 (44%), Gaps = 59/293 (20%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
           LEM  S + E    G   TASTY  ++ +L    +  E + +L EM              
Sbjct: 24  LEMFNSAKSE---DGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYI 80

Query: 107 ------GEKGIVPDSI----------------TYNILINGYCRCGNAKKAFSLHDEMIHK 144
                 G KG V +++                ++N ++N     G   +A  ++  M  +
Sbjct: 81  EAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDR 140

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+Q  + TYT  I    K  R   A +L  N    G   + V +  ++ G   +G  + A
Sbjct: 141 GVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHA 200

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L  EM    + PD V +N L+H  C++G V E+ RLL ++ +RG+ P+         T
Sbjct: 201 RELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPN-------LFT 253

Query: 265 YNALIQGLCKNQEGDL-----------AEELLREMVSKGITPDDNTYFSLIEG 306
           +N  +QGLC+  EG L           AEE LR+MV+ G  PDD TY S+I+G
Sbjct: 254 FNIFVQGLCR--EGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDG 304


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 166/341 (48%), Gaps = 33/341 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P   TY   +   CKE   ++A  +L++M+  G  P  VTYN LI+  C++G+
Sbjct: 186 MLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGD 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + +   G  P A TY  ++  L    +  EAD +L +M      PD +T+N 
Sbjct: 246 VGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNA 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-- 178
           +I   C+ G   +A  +  +M   G  P ++TY+S++  L K+ R+ EA +L +  LA  
Sbjct: 306 VITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEM 365

Query: 179 --KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG-RCRQGK 235
             K  +PD V FN +I   C  G  +RA  ++ EM      PD  TYN ++ G  C+  K
Sbjct: 366 VSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCK 425

Query: 236 VEEARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNA 267
            EEA  LL+ M   G+ PD  ++                            +P ++ YNA
Sbjct: 426 TEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNA 485

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           ++ GLCK    DLA +    MVS G  PD++TY  L+EGIA
Sbjct: 486 ILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIA 526



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 167/334 (50%), Gaps = 36/334 (10%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY + V+G C+ G ++ A RM++ +      P   TYN LI   C +G +  A +  D+M
Sbjct: 130 TYNTMVNGYCRAGNIDAARRMIDSVP---FAPDTFTYNPLIRALCVRGCVLDALAVFDDM 186

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           + +G  P+  TY++L+     E    +A  +L EM  KG  PD +TYN+LIN  C  G+ 
Sbjct: 187 LHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDV 246

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A  + + +   G +P  +TYT ++  L    R  EAD+L     +    PD V FNA+
Sbjct: 247 GEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAV 306

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA----RRLLDQMK 247
           I   C  G + RA  +L +M      PD +TY+++M G C++ +V+EA    + LL +M 
Sbjct: 307 ITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMV 366

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQG-LCKNQEG 278
            +   PD ++FN                            P   TYN ++ G LCK+ + 
Sbjct: 367 SKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKT 426

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + A +LL  MVS G+ PD  TY SL  G++  D+
Sbjct: 427 EEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDE 460



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 149/300 (49%), Gaps = 20/300 (6%)

Query: 19  GMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP 78
           G+ + G L+ A R++  +  +G  P  +  N LI   C  G +  A     E V + + P
Sbjct: 70  GLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADA-----ERVVEALGP 124

Query: 79  TAS--TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +A+  TYN +++       +  A  M+  +      PD+ TYN LI   C  G    A +
Sbjct: 125 SATIITYNTMVNGYCRAGNIDAARRMIDSVP---FAPDTFTYNPLIRALCVRGCVLDALA 181

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           + D+M+H+G  P+++TY+ L+    K++   +A  L +   +KG  PDIV +N LI+  C
Sbjct: 182 VFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMC 241

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
           + G++  A  +L  +      PD VTY  ++   C   + EEA +LL +M      PD +
Sbjct: 242 SQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEV 301

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKA 313
           +FN       A+I  LC+      A ++L +M   G TPD  TY S+++G+     VD+A
Sbjct: 302 TFN-------AVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEA 354



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 5/251 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S    PD  T+ + ++ +C++G +  A+++L QM E+G  P  +TY++++DG C +  
Sbjct: 291 MFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERR 350

Query: 61  LEMAFSFRDE----MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           ++ A     E    MV +  +P   T+N +I  L  +     A  ++ EM E G +PD  
Sbjct: 351 VDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDIT 410

Query: 117 TYNILINGY-CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           TYN +++G+ C+    ++A  L + M+  G+ P   TY SL F LS+++ M  A  +F  
Sbjct: 411 TYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRR 470

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
             A G+ PD +++NA++ G C     + A      M      PDE TY  L+ G   +G 
Sbjct: 471 VQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGF 530

Query: 236 VEEARRLLDQM 246
           +EEA+ LL  +
Sbjct: 531 LEEAKELLGNL 541


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 170/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+ D + + S +S  CK G ++ A  + +++ E GLV  A TY  LI G CN G 
Sbjct: 311 MLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQ 370

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM  QG+      +N LI+    +  + EA  M   M +KG   D  TYN 
Sbjct: 371 LDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNT 430

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +  G C+    ++A      M+ KG+ P  +++T +I +  K+  ++EA+++F++   KG
Sbjct: 431 IAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKG 490

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N LIDG+   G ++ A+ L  EM+ + +  D  TY TL+HG C  GKVEEA 
Sbjct: 491 EKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEAL 550

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL+++ R+G+    IS     +TY A+I GL K    + A  L  EM++ G+TPDD  Y
Sbjct: 551 TLLNEVCRKGLA---ISI----VTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVY 603

Query: 301 FSLIEGI 307
            SL+  +
Sbjct: 604 TSLVANL 610



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 163/339 (48%), Gaps = 28/339 (8%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V    Y+    + G+CK+GR+E A  ++ +M   G+ P  VTYNTL++ Y    + E   
Sbjct: 211 VDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVN 270

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M    ++  A+TY LLI       K+ EA+ + ++M E+G+  D   +  +I+  
Sbjct: 271 EMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQ 330

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ GN K+AF+L DE+  +G+     TY +LI       ++  A+ L     ++G+  ++
Sbjct: 331 CKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNL 390

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V+FN LI+G+C  G I+ A  +   M++     D  TYNT+  G C+  + EEA+R L  
Sbjct: 391 VIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFT 450

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
           M  +G+ P+ +SF                             P  +TYN LI G  K  +
Sbjct: 451 MVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGK 510

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              A  L  EM S G+T D  TY +L+ G     K  E+
Sbjct: 511 LKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEA 549



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 94/162 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P++ ++   +   CKEG L EA R+ + MK+ G  P  VTYNTLIDGY  KG 
Sbjct: 451 MVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGK 510

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+  +DEM   G+     TY  L+H   +  K+ EA  +L E+  KG+    +TY  
Sbjct: 511 LKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTA 570

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           +I+G  + G +++AF L+DEM+  G+ P    YTSL+  L K
Sbjct: 571 IISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHK 612



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 133/297 (44%), Gaps = 42/297 (14%)

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           Y +    E  F   D MV  G+     +  + +  L    +MV +    K+M E  +   
Sbjct: 155 YVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDVT 214

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK------------ 162
             +  I+I+G C+ G  ++A  L  EM  KGI+P ++TY +L+    K            
Sbjct: 215 VYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLR 274

Query: 163 -----------------------QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
                                    ++ EA+++FE  L +G+  DI +F ++I   C  G
Sbjct: 275 LMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLG 334

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
           N++RAF+L  E++   +  +  TY  L+HG C  G+++ A  L+++M+ +G+  + + F 
Sbjct: 335 NMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIF- 393

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                 N LI G CK    D A  +   M  KG   D  TY ++  G+  +++  E+
Sbjct: 394 ------NTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEA 444


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/315 (34%), Positives = 166/315 (52%), Gaps = 11/315 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD  T+ + V+G+C+ G +++   M++ M E G      TYN+LI G C  G ++ A
Sbjct: 297 GFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEA 356

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 MV +   P   TYN LI  L  E  +  A ++ + +  KG++PD  T+N LI G
Sbjct: 357 VEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQG 416

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C   N + A  L +EM  KG  P   TY+ LI  L  + R+ EA  L +     G   +
Sbjct: 417 LCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARN 476

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V++N LIDG C N  +  A  +  +M+ + V    VTYNTL++G C+  +VEEA +L+D
Sbjct: 477 VVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMD 536

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFS 302
           QM   G+KPD       + TY  +++  C  Q+GD+  A ++++ M   G  PD  TY +
Sbjct: 537 QMIMEGLKPD-------KFTYTTMLKYFC--QQGDIKRAADIVQNMTLNGCEPDIVTYGT 587

Query: 303 LIEGIASVDKAAESS 317
           LI G+    +   +S
Sbjct: 588 LIGGLCKAGRVDVAS 602



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 166/309 (53%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR  +P++ TY + +  +CKE  +E A+ +   +   G++P   T+N+LI G C   N
Sbjct: 363 MVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSN 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E+A    +EM ++G  P   TY++LI  L  ER++ EA  +LKEM   G   + + YN 
Sbjct: 423 REIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNT 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+      A  + D+M   G+  + +TY +LI  L K  R+ EA QL +  + +G
Sbjct: 483 LIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEG 542

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +  ++   C  G+I+RA  +++ M      PD VTY TL+ G C+ G+V+ A 
Sbjct: 543 LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVAS 602

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  ++ +G     +   P    YN +IQ LCK +    A  L REM+ KG  PD  TY
Sbjct: 603 KLLRSVQMKG-----MVLTPQ--AYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITY 655

Query: 301 FSLIEGIAS 309
             +  G+ +
Sbjct: 656 KIVFRGLCN 664



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 170/353 (48%), Gaps = 44/353 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  V PD  T+   +  +CK  +L  A  MLE M   GL P   T+ TL+ G+  + +
Sbjct: 190 MVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEAD 249

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   ++ MV+ G   T+ + N+L++ L  E ++ EA   + E  E+G  PD +T+N 
Sbjct: 250 VEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNA 307

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI---------------------------------- 146
           L+NG CR G+ K+   + D M+ KG                                   
Sbjct: 308 LVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRD 367

Query: 147 -QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P  +TY +LI  L K+N +  A +L     +KG+LPD+  FN+LI G C   N E A 
Sbjct: 368 CEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAM 427

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L +EM      PDE TY+ L+   C + +++EA  LL +M+  G   + +        Y
Sbjct: 428 ELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVV-------VY 480

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           N LI GLCKN     AE++  +M   G++    TY +LI G+    +  E++ 
Sbjct: 481 NTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQ 533



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 154/313 (49%), Gaps = 10/313 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G  PD +TY   +  +C E RL+EA  +L++M+ +G     V YNTLIDG C    
Sbjct: 433 MKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNR 492

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M   G+  ++ TYN LI+ L   +++ EA  ++ +M  +G+ PD  TY  
Sbjct: 493 VGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTT 552

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  +C+ G+ K+A  +   M   G +P ++TY +LI  L K  R+  A +L  +   KG
Sbjct: 553 MLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKG 612

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M+     +N +I   C     + A  L +EM      PD +TY  +  G C   G ++EA
Sbjct: 613 MVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEA 672

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
                +M  +GI P+  SF         L +GLC     D   +L+  ++ KG      T
Sbjct: 673 VDFTVEMLEKGILPEFPSF-------GFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSET 725

Query: 300 YFSLIEGIASVDK 312
             S+I G   + K
Sbjct: 726 --SIIRGFLKIQK 736



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 151/312 (48%), Gaps = 9/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            V+PD+  Y   +S + K  +L+    +  +M  + + P   T+N LI   C    L  A
Sbjct: 159 AVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPA 218

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++M   G+ P   T+  L+   + E  +  A  + + M E G    S++ N+L+NG
Sbjct: 219 ILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNG 278

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  ++A     E   +G  P  +T+ +L+  L +   + +  ++ +  L KG   D
Sbjct: 279 LCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELD 336

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N+LI G C  G I+ A  +L  M      P+ VTYNTL+   C++  VE A  L  
Sbjct: 337 VYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELAR 396

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +  +G+ PD         T+N+LIQGLC     ++A EL  EM  KG  PD+ TY  LI
Sbjct: 397 VLTSKGVLPD-------VCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILI 449

Query: 305 EGIASVDKAAES 316
           E + S  +  E+
Sbjct: 450 ESLCSERRLKEA 461


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 174/348 (50%), Gaps = 42/348 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD Y + + ++  CK G++EEA  +  +M+E G+VP  VTYNT+IDG    G  + 
Sbjct: 246 KGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDE 305

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI------- 116
           AF F+++MV++G+ PT  TY++L+  L   +++ +A  +LKEM EKG  P+ I       
Sbjct: 306 AFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLID 365

Query: 117 ----------------------------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                       TYN LI GYC+ G A  A  L  EM+  G   
Sbjct: 366 SLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNV 425

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
              ++TS+I +L   +    A +     L + M P   +   LI G C +G   +A  L 
Sbjct: 426 NQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELW 485

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            +        D  T N L+HG C  GK+EE  R+  ++  RG   D       R++YN L
Sbjct: 486 LKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMD-------RVSYNTL 538

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           I G C N++ D A   + EMV KG+ PD+ TY  LI G+ +++K  E+
Sbjct: 539 ISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEA 586



 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 170/339 (50%), Gaps = 52/339 (15%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G   D+ T  + + G+C+ G+LEE  R+ +++   G V   V+YNTLI G C    L+
Sbjct: 490 NKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLD 549

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF F DEMVK+G+ P   TY++LI  LL   K+ EA     +    G++PD  TY+++I
Sbjct: 550 EAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMI 609

Query: 123 NG-----------------------------------YCRCGNAKKAFSLHDEMIHKGIQ 147
           +G                                   YCR G    A  L ++M HKGI 
Sbjct: 610 DGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGIS 669

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P   TYTSLI  +S  +R+ EA  L E    +G+ P++  + ALIDG+   G + +   L
Sbjct: 670 PNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECL 729

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           L+EM    VHP+++TY  ++ G  R G V EA RLL +M+ +GI PD I       TY  
Sbjct: 730 LREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSI-------TYKE 782

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            I G  K  +G + +        KG   D+  Y ++IEG
Sbjct: 783 FIYGYLK--QGGVLQAF------KG--SDEENYAAIIEG 811



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 164/382 (42%), Gaps = 67/382 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-------------------- 40
           M S+G+   S TY + + G CK G+ + A R+L++M   G                    
Sbjct: 383 MVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHM 442

Query: 41  ---------------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                          + P      TLI G C  G    A     + + +G +    T N 
Sbjct: 443 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNA 502

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK--KAFSLHDEMIH 143
           L+H L    K+ E   + KE+  +G V D ++YN LI+G C CGN K  +AF   DEM+ 
Sbjct: 503 LLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISG-C-CGNKKLDEAFMFMDEMVK 560

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           KG++P   TY+ LI  L   N++ EA Q + +    GM+PD+  ++ +IDG C     E 
Sbjct: 561 KGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEE 620

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---- 259
              L  EM    + P+ V YN L+   CR G++  A  L + MK +GI P+  ++     
Sbjct: 621 GQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIK 680

Query: 260 ------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
                                   P    Y ALI G  K  +    E LLREM SK + P
Sbjct: 681 GMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 740

Query: 296 DDNTYFSLIEGIASVDKAAESS 317
           +  TY  +I G A      E+S
Sbjct: 741 NKITYTVMIGGYARDGNVTEAS 762



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 127/245 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PD+YTY   + G+    ++EEA +     K NG++P   TY+ +IDG C    
Sbjct: 558 MVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAER 617

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E      DEM+   + P    YN LI       ++  A ++ ++M  KGI P+S TY  
Sbjct: 618 TEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTS 677

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G       ++A  L +EM  +G++P +  YT+LI    K  +M++ + L     +K 
Sbjct: 678 LIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 737

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  +I G+  +GN+  A  LL EM    + PD +TY   ++G  +QG V +A 
Sbjct: 738 VHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAF 797

Query: 241 RLLDQ 245
           +  D+
Sbjct: 798 KGSDE 802



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 142/284 (50%), Gaps = 14/284 (4%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEM---AFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           +   G+ P+  T N L+         +    AF     +V +G+ P    +   I+    
Sbjct: 209 LANKGMFPSKTTCNILLTSLVRATEFQKCCEAF----HVVCKGVSPDVYLFTTAINAFCK 264

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
             K+ EA ++  +M E G+VP+ +TYN +I+G    G   +AF   ++M+ +G++PT++T
Sbjct: 265 GGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLIT 324

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y+ L+  L+K  R+ +A  + +    KG  P+++++N LID     G++ +A  +   M 
Sbjct: 325 YSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMV 384

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              +     TYNTL+ G C+ G+ + A RLL +M         I FN  + ++ ++I  L
Sbjct: 385 SKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEML-------SIGFNVNQGSFTSVICLL 437

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C +   D A   + EM+ + ++P      +LI G+    K +++
Sbjct: 438 CSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 481



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 31/235 (13%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF-SLHDEMIHKGIQPTMLTYTSLI 157
           A D+   +  KG+ P   T NIL+    R    +K   + H  ++ KG+ P +  +T+ I
Sbjct: 202 ALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFH--VVCKGVSPDVYLFTTAI 259

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
               K  ++ EA +LF      G++P++V +N +IDG   +G  + AF   ++M    V 
Sbjct: 260 NAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVE 319

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP----------------- 260
           P  +TY+ L+ G  +  ++ +A  +L +M  +G  P+ I +N                  
Sbjct: 320 PTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEI 379

Query: 261 -----------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                      T  TYN LI+G CK+ + D+AE LL+EM+S G   +  ++ S+I
Sbjct: 380 KDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVI 434


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/321 (34%), Positives = 170/321 (52%), Gaps = 12/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-----LVPTAVTYNTLIDGY 55
           M   GV P+  TY S + G C  G+ +EA   L++++ +G     L P   TY TL+ GY
Sbjct: 257 MVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGY 316

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
             KG L    +  D MV+ GI P    YN+LI     + K+ EA  +  +M ++G+ PD+
Sbjct: 317 ATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDA 376

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           +TY  +I   C+ G  + A    ++MI +G+ P  + Y SLI  L   N+   A++L   
Sbjct: 377 VTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILE 436

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            L +G+  + + FN++ID HC  G +  +  L   M R+ V PD +TY+TL+ G C  GK
Sbjct: 437 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 496

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           ++EA +LL  M   G+KP+ +       TY  LI G CK      A  L +EM S G++P
Sbjct: 497 MDEAMKLLSGMVSVGLKPNTV-------TYRTLINGYCKISRMGDALVLFKEMESSGVSP 549

Query: 296 DDNTYFSLIEGIASVDKAAES 316
           D  TY  +++G+    + A +
Sbjct: 550 DIITYNIILQGLFQTRRTAAA 570



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 170/321 (52%), Gaps = 12/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  TY S ++ +CK   +++A  +L  M +NG++P   TY +++ GYC+ G 
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQ 281

Query: 61  LEMAFSF-----RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            + A  F      D +   G+ P  +TY  L+     +  +V    +L  M   GI PD 
Sbjct: 282 PKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDH 341

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
             YNILI  Y + G   +A  +  +M  +G+ P  +TY ++I +L K  R+ +A   FE 
Sbjct: 342 YVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQ 401

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            + +G+ P  +++N+LI G CT    ERA  L+ EM    +  + + +N+++   C++G+
Sbjct: 402 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 461

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           V E+ +L D M R G+KPD I       TY+ LI G C   + D A +LL  MVS G+ P
Sbjct: 462 VIESEKLFDLMVRIGVKPDII-------TYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKP 514

Query: 296 DDNTYFSLIEGIASVDKAAES 316
           +  TY +LI G   + +  ++
Sbjct: 515 NTVTYRTLINGYCKISRMGDA 535



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 166/303 (54%), Gaps = 7/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++PD  TY + + G   +G L     +L+ M  NG+ P    YN LI  Y  +G ++ A
Sbjct: 301 GLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEA 360

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M +QG+ P A TY  +I  L    ++ +A    ++M ++G+ P +I YN LI+G
Sbjct: 361 MLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHG 420

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C C   ++A  L  EM+ +GI    + + S+I    K+ R+IE+++LF+  +  G+ PD
Sbjct: 421 LCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 480

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ ++ LIDG+C  G ++ A  LL  M  + + P+ VTY TL++G C+  ++ +A  L  
Sbjct: 481 IITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFK 540

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M+  G+ PD I       TYN ++QGL + +    A+EL   +   G   + +TY  ++
Sbjct: 541 EMESSGVSPDII-------TYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 593

Query: 305 EGI 307
            G+
Sbjct: 594 HGL 596



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD Y Y   +    K+G+++EA  +  +M++ GL P AVTY  +I   C  G 
Sbjct: 332 MVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGR 391

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ +G+ P    YN LIH L    K   A++++ EM ++GI  ++I +N 
Sbjct: 392 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 451

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G   ++  L D M+  G++P ++TY++LI       +M EA +L    ++ G
Sbjct: 452 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVG 511

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  LI+G+C    +  A  L KEM+   V PD +TYN ++ G  +  +   A+
Sbjct: 512 LKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 571

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++   G +   I  +    TYN ++ GLCKN+  D A  + + +    +  +  T+
Sbjct: 572 ELYVRITESGTQ---IELS----TYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTF 624

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+ +  V +  E+ +
Sbjct: 625 NIMIDALLKVGRNGEAKD 642



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 164/324 (50%), Gaps = 15/324 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEA---SRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           M      PD ++    + G+C E R +EA     M+   +  G  P  V+Y T+I+G+  
Sbjct: 149 MTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFK 208

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +G+   A+S   EM+ + I P   TY+ +I  L   + M +A ++L  M + G++P+  T
Sbjct: 209 EGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRT 268

Query: 118 YNILINGYCRCGNAKKAFSL-----HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           Y  +++GYC  G  K+A         D +   G++P + TY +L+   + +  ++    L
Sbjct: 269 YTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHAL 328

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
            +  +  G+ PD  ++N LI  +   G ++ A  +  +M +  ++PD VTY  ++   C+
Sbjct: 329 LDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCK 388

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            G+VE+A    +QM   G+ P +I        YN+LI GLC   + + AEEL+ EM+ +G
Sbjct: 389 SGRVEDAMLYFEQMIDEGLSPGNI-------VYNSLIHGLCTCNKWERAEELILEMLDRG 441

Query: 293 ITPDDNTYFSLIEGIASVDKAAES 316
           I  +   + S+I+      +  ES
Sbjct: 442 ICLNTIFFNSIIDSHCKEGRVIES 465



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 164/345 (47%), Gaps = 39/345 (11%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P  +TY   +   C+  RL+     L  + + G    A+T+  L+ G C   + +  M
Sbjct: 83  VTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
               R  M +   MP   +  +L+  L  E +  EA ++   M +    G  PD ++Y  
Sbjct: 143 DIVLR-RMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTT 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G++ KA+S + EM+ + I P ++TY+S+I  L K   M +A ++  + +  G
Sbjct: 202 VINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNG 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV-----TYNTLMHGRCRQGK 235
           ++P+   + +++ G+C++G  + A   LK++    V PD +     TY TL+ G   +G 
Sbjct: 262 VMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGA 321

Query: 236 VEEARRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNA 267
           +     LLD M R GI PDH  +                            NP  +TY A
Sbjct: 322 LVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGA 381

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           +I  LCK+   + A     +M+ +G++P +  Y SLI G+ + +K
Sbjct: 382 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 426



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 157/355 (44%), Gaps = 53/355 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ +G+ PD+ TYG+ +  +CK GR+E+A    EQM + GL P  + YN+LI        
Sbjct: 367 MRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 426

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      D +C +G +  +    D MV+ G+ P   TY+ 
Sbjct: 427 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 486

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI    +  KM EA  +L  M   G+ P+++TY  LINGYC+      A  L  EM   G
Sbjct: 487 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSG 546

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++TY  ++  L +  R   A +L+      G   ++  +N ++ G C N   + A 
Sbjct: 547 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 606

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + + +  M +  +  T+N ++    + G+  EA+ L       G+ P++ ++    +  
Sbjct: 607 RMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYR--LMAE 664

Query: 266 NALIQGL---------------CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           N + QGL               C    G L   ++RE++ +G      TY S+I+
Sbjct: 665 NIIGQGLLEELDQLFLSMEDNGCTVDSGML-NFIVRELLQRGEITRAGTYLSMID 718



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 112/245 (45%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA ++L  M   GL P  VTY TLI+GYC    +  A
Sbjct: 476 GVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDA 535

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P   TYN+++  L   R+   A ++   + E G   +  TYNI+++G
Sbjct: 536 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 595

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  +   +    ++    T+  +I  L K  R  EA  LF  F + G++P+
Sbjct: 596 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPN 655

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  + +     G +E    L   M+      D    N ++    ++G++  A   L 
Sbjct: 656 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 715

Query: 245 QMKRR 249
            +  +
Sbjct: 716 MIDEK 720



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 11/214 (5%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G   + P   TY ILI   CR       F+    ++ KG +   +T+T L+  L    R 
Sbjct: 79  GAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRT 138

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK---VHPDEVT 222
            +A D +         +PD+     L+ G C     + A  L   M   +     PD V+
Sbjct: 139 SDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVS 198

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y T+++G  ++G   +A     +M  R I PD +       TY+++I  LCK Q  D A 
Sbjct: 199 YTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVV-------TYSSIIAALCKGQAMDKAM 251

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E+L  MV  G+ P+  TY S++ G  S  +  E+
Sbjct: 252 EVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEA 285



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 48/115 (41%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++ T+   +  + K GR  EA  +      NGLVP   TY  + +    +G LE      
Sbjct: 620 EARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 679

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
             M   G    +   N ++ ELL   ++  A   L  + EK    ++ T ++ I+
Sbjct: 680 LSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 734


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 180/351 (51%), Gaps = 35/351 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY S + G  K G LEE  +++ +M+++G     VTYN LI+ +   G 
Sbjct: 226 MKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGR 285

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+S+  EM +QG++    T++  +     E  + EA  +  +M  +G++P+  TY  
Sbjct: 286 MEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTS 345

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G    A  L DEM+H+G+ P ++TYT ++  L K+ ++ EAD +       G
Sbjct: 346 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGG 405

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + +++  LI GH  N N ERA  LL +M    +  D   Y TL+ G C+  KV+EA+
Sbjct: 406 VKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAK 465

Query: 241 RLLDQMKRRGIKPDHI----------------------------SFNPTRLTYNALIQGL 272
            LL +M   G++P+ +                             F P  +TY ALI GL
Sbjct: 466 SLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGL 525

Query: 273 CKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEG---IASVDKAAESSN 318
           CK   G ++E +    +M   G+ P+   Y +LI+G   I S++KA    N
Sbjct: 526 CK--AGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMN 574



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 166/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +GV  +  T+ +FV   CKEG ++EA ++  QM+  G++P   TY +L+DG C  G 
Sbjct: 296 MKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 355

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    DEMV QG++P   TY +++  L  E K+ EAD++L  M   G+  + + Y  
Sbjct: 356 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTT 415

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+    N+++A  L ++M +KG++  +  Y +LI+ L K  ++ EA  L       G
Sbjct: 416 LIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCG 475

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++  ++D     G    A +LL ++      P+ VTY  L+ G C+ G + EA 
Sbjct: 476 LRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAI 535

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              ++M+  G+       +P    Y ALI G CK    + A  L+ EM+ KG++ D   Y
Sbjct: 536 SHFNKMRELGL-------DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVY 588

Query: 301 FSLIEG 306
            SLI+G
Sbjct: 589 TSLIDG 594



 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+ +T+   +  +CKEG L EA  +  +MK  G  P  VTYN+LIDGY   G+LE     
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM K G      TYN LI+      +M +A     EM  +G+V + +T++  ++ +C+
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCK 317

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  ++A  L  +M  +G+ P   TYTSL+    K  R+ +A  L +  + +G++P++V 
Sbjct: 318 EGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT 377

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  ++DG C  G +  A ++L  M+R  V  +E+ Y TL+HG       E A  LL+QMK
Sbjct: 378 YTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMK 437

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G++ D +S       Y  LI GLCK+Q+ D A+ LL +M   G+ P+   Y ++++ +
Sbjct: 438 NKGMELD-VSL------YGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDAL 490

Query: 308 ASVDKAAES 316
               K +E+
Sbjct: 491 FKAGKESEA 499



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 157/318 (49%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  TY   V G+CKEG++ EA  +L  M+  G+    + Y TLI G+    N
Sbjct: 366 MVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNN 425

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    ++M  +G+    S Y  LI  L  ++K+ EA  +L +M   G+ P+++ Y  
Sbjct: 426 SERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTT 485

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++   + G   +A +L  +++  G QP ++TY +LI  L K   + EA   F      G
Sbjct: 486 IMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELG 545

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  + ALIDG C  G++ +A  L+ EM    +  D+V Y +L+ G  +Q  +++A 
Sbjct: 546 LDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAF 605

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G++ D          Y   I G C       A  +L EM+  GITPD   Y
Sbjct: 606 ALKTKMIESGLQLD-------LYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVY 658

Query: 301 FSLIEGIASVDKAAESSN 318
             LI     +    E+S+
Sbjct: 659 NCLIRKYQKLGNMEEASS 676



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 153/296 (51%), Gaps = 19/296 (6%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + +S +   G L++A R L ++++  + P   T        CN   L +A + +  +V++
Sbjct: 139 TLLSLLADHGLLDDAVRALARVRQLRVPPNTRT--------CNHILLRLARNRQGGLVRR 190

Query: 75  GI----MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                 +P   T+N++I  L  E ++VEA  +   M   G  PD +TYN LI+GY +CG+
Sbjct: 191 LFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGD 250

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            ++   L  EM   G    ++TY +LI   SK  RM +A   F     +G++ ++V F+ 
Sbjct: 251 LEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFST 310

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
            +D  C  G ++ A  L  +M    + P+E TY +L+ G C+ G++++A  LLD+M  +G
Sbjct: 311 FVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQG 370

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + P+ +       TY  ++ GLCK  +   A+ +L  M   G+  ++  Y +LI G
Sbjct: 371 LVPNVV-------TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHG 419



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 125/247 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G++ D   YG+ + G+CK+ +++EA  +L +M   GL P  V Y T++D     G 
Sbjct: 436 MKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGK 495

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   +++  G  P   TY  LI  L     + EA     +M E G+ P+   Y  
Sbjct: 496 ESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTA 555

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G+  KA  L +EMI KG+    + YTSLI    KQ  + +A  L    +  G
Sbjct: 556 LIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESG 615

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+  +   I G C    ++ A  +L EM    + PD+  YN L+    + G +EEA 
Sbjct: 616 LQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEAS 675

Query: 241 RLLDQMK 247
            L ++M+
Sbjct: 676 SLQNEME 682



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 140/277 (50%), Gaps = 13/277 (4%)

Query: 42  VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           +P+ V  +TL+    + G L+ A      + +  + P   T N ++  L   R+      
Sbjct: 133 LPSVV--DTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQ----GG 186

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +++ + +   VP+  T+NI+I+  C+ G   +A +L   M   G  P ++TY SLI    
Sbjct: 187 LVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYG 246

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K   + E +QL       G   D+V +NALI+     G +E+A+S   EM R  V  + V
Sbjct: 247 KCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVV 306

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           T++T +   C++G V+EA +L  QM+ RG+ P+         TY +L+ G CK    D A
Sbjct: 307 TFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNE-------FTYTSLVDGTCKAGRLDDA 359

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             LL EMV +G+ P+  TY  +++G+    K AE+ N
Sbjct: 360 IVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADN 396


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++ D+ TY + +SG+   GR  +A+R+L  M +  + P  + +  LID +  +GN
Sbjct: 210 MEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +   EM+++ ++P   TYN LI+   +   + +A  M   M  KG  PD +TYN 
Sbjct: 270 LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+    +    L  EM ++G+     TY +LI    +  ++  A ++F   +  G
Sbjct: 330 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N L+D  C NG IE+A  +++++ + ++  D +TYN ++ G CR  K++EA 
Sbjct: 390 VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAW 449

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   + R+G+KPD I+       Y  +I GLC+      A++L R M   G  P +  Y
Sbjct: 450 CLFRSLTRKGVKPDAIA-------YITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 502



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 169/336 (50%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P   T GS ++G C+  R +EA  +++ M   G VP  V YNT+I+G C   +
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A      M K+GI   A TYN LI  L    +  +A  +L++M ++ I P+ I +  
Sbjct: 200 LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + GN  +A +L+ EMI + + P + TY SLI        + +A  +F+  ++KG
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N LI G C +  +E    L  EM    +  D  TYNTL+HG C+ GK+  A+
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 379

Query: 241 RLLDQMKRRGIKPDHISFNPTR----------------------------LTYNALIQGL 272
           ++ ++M   G+ PD +++N                               +TYN +IQGL
Sbjct: 380 KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGL 439

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           C+  +   A  L R +  KG+ PD   Y ++I G+ 
Sbjct: 440 CRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLC 475



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 165/309 (53%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  D Y++   +   C+  RL  A  +L +M + G  P+ VT  +L++G+C    
Sbjct: 105 MENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  D M   G +P    YN +I+ L   R +  A ++   M +KGI  D++TYN 
Sbjct: 165 FQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNT 224

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G    G    A  L  +M+ + I P ++ +T+LI    K+  ++EA  L++  + + 
Sbjct: 225 LISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRS 284

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++  +N+LI+G C +G +  A  +   M      PD VTYNTL+ G C+  +VE+  
Sbjct: 285 VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGM 344

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M  +G+  D         TYN LI G C+  + ++A+++   MV  G++PD  TY
Sbjct: 345 KLFCEMTYQGLVGD-------AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTY 397

Query: 301 FSLIEGIAS 309
             L++ + +
Sbjct: 398 NILLDCLCN 406



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 140/275 (50%), Gaps = 1/275 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P+   + + +    KEG L EA  + ++M    +VP   TYN+LI+G+C  G 
Sbjct: 245 MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 304

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D MV +G  P   TYN LI      +++ +   +  EM  +G+V D+ TYN 
Sbjct: 305 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G    A  + + M+  G+ P ++TY  L+  L    ++ +A  + E+     
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 424

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  DI+ +N +I G C    ++ A+ L + + R  V PD + Y T++ G CR+G   EA 
Sbjct: 425 MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 484

Query: 241 RLLDQMKRRGIKPDHISFNPT-RLTYNALIQGLCK 274
           +L  +MK  G  P    ++ T R  Y +L   L K
Sbjct: 485 KLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIK 519



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++SR + P    +   ++ + K  + +    +  +M+  G+     ++  LI  +C    
Sbjct: 71  LQSRPI-PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSR 129

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A +   +M+K G  P+  T   L++      +  EA  ++  M   G VP+ + YN 
Sbjct: 130 LSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNT 189

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+  +   A  +   M  KGI+   +TY +LI  LS   R  +A +L  + + + 
Sbjct: 190 VINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK 249

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ F ALID     GN+  A +L KEM R  V P+  TYN+L++G C  G + +A+
Sbjct: 250 IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAK 309

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + D M  +G  PD +       TYN LI G CK++  +   +L  EM  +G+  D  TY
Sbjct: 310 YMFDLMVSKGCFPDVV-------TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTY 362

Query: 301 FSLIEGIASVDK 312
            +LI G     K
Sbjct: 363 NTLIHGYCQAGK 374



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 28/273 (10%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AFS   EM++   +P+   +  ++  +    K      +  +M   GI  D  ++ ILI+
Sbjct: 63  AFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 122

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +CRC     A +L  +M+  G +P+++T  SL+    + NR  EA  L ++    G +P
Sbjct: 123 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 182

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++V++N +I+G C N ++  A  +   M++  +  D VTYNTL+ G    G+  +A RLL
Sbjct: 183 NVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLL 242

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
             M +R I P+ I F                             P   TYN+LI G C +
Sbjct: 243 RDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIH 302

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                A+ +   MVSKG  PD  TY +LI G  
Sbjct: 303 GCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFC 335



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 7/190 (3%)

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
           C     AFSL  EM+     P+++ +T ++ V++K N+      L+      G+  D+  
Sbjct: 57  CIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYS 116

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F  LI   C    +  A +LL +M ++   P  VT  +L++G C+  + +EA  L+D M 
Sbjct: 117 FTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM- 175

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                 D   F P  + YN +I GLCKN++ + A E+   M  KGI  D  TY +LI G+
Sbjct: 176 ------DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGL 229

Query: 308 ASVDKAAESS 317
           ++  +  +++
Sbjct: 230 SNSGRWTDAA 239



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           K  +A  +  EM +   +P  + +  ++    +         L+ +M + GI   + ++T
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
            LI    + +R+  A  L    +  G  P IV   +L++G C     + A SL+  MD  
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
              P+ V YNT+++G C+   +  A  +   M+++GI+ D +       TYN LI GL  
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAV-------TYNTLISGLSN 231

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +     A  LLR+MV + I P+   + +LI+         E+ N
Sbjct: 232 SGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARN 275


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 171/308 (55%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++ D YT+   ++  C   ++  A  +L +M + G  P  VT  +L++G+C +  
Sbjct: 111 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNR 170

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  D+MV+ G  P    YN +I  L   R++ +A D  KE+G KGI P+ +TY  
Sbjct: 171 VSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTA 230

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG C  G    A  L  +MI + I P ++TY++L+    K  +++EA ++FE  +   
Sbjct: 231 LVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMS 290

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +++LI+G C +  I+ A  +   M      PD V+YNTL++G C+  +VE+  
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGM 350

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M +RG+  + +       TYN LIQG  +  + D A+E   +M S G++PD  TY
Sbjct: 351 KLFRKMSQRGLVNNTV-------TYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTY 403

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 404 NILLGGLC 411



 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 174/333 (52%), Gaps = 28/333 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  T GS V+G C+  R+ +A  ++++M E G  P  V YN +ID  C    +  A
Sbjct: 150 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDA 209

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F  E+ ++GI P   TY  L++ L    +  +A  +L++M ++ I P+ ITY+ L++ 
Sbjct: 210 LDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDA 269

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G   +A  + +EM+   I P ++TY+SLI  L   +R+ EA+Q+F+  ++KG  PD
Sbjct: 270 FVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPD 329

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LI+G C    +E    L ++M +  +  + VTYNTL+ G  + G V++A+    
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFS 389

Query: 245 QMKRRGIKPDHISFNPTR----------------------------LTYNALIQGLCKNQ 276
           QM   G+ PD  ++N                               +TY  +IQG+CK  
Sbjct: 390 QMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTG 449

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           + + A  L   +  KG+ PD  TY +++ G+ +
Sbjct: 450 KVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCT 482



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 160/295 (54%), Gaps = 7/295 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++P+  TY + V+G+C  GR  +A+R+L  M +  + P  +TY+ L+D +   G +  
Sbjct: 219 KGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLE 278

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EMV+  I P   TY+ LI+ L +  ++ EA+ M   M  KG  PD ++YN LIN
Sbjct: 279 AKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLIN 338

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+    +    L  +M  +G+    +TY +LI    +   + +A + F    + G+ P
Sbjct: 339 GFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSP 398

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N L+ G C NG +E+A  + ++M + ++  D VTY T++ G C+ GKVE+A  L 
Sbjct: 399 DIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLF 458

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
             +  +G+KPD +       TY  ++ GLC        E L  +M  +G+  +D+
Sbjct: 459 CSLSLKGLKPDIV-------TYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDS 506



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 162/311 (52%), Gaps = 10/311 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K  + +    + ++M+  G+     T+N +I+ +C    + +A S 
Sbjct: 83  PSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSV 142

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T   L++      ++ +A  ++ +M E G  PD + YN +I+  C+
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCK 202

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                 A     E+  KGI+P ++TYT+L+  L    R  +A +L  + + + + P+++ 
Sbjct: 203 TRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVIT 262

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++AL+D    NG +  A  + +EM RM + PD VTY++L++G C   +++EA ++ D M 
Sbjct: 263 YSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
            +G  PD +S       YN LI G CK +  +   +L R+M  +G+  +  TY +LI+G 
Sbjct: 323 SKGCFPDVVS-------YNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGF 375

Query: 307 --IASVDKAAE 315
             +  VDKA E
Sbjct: 376 FQVGDVDKAQE 386



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 149/298 (50%), Gaps = 19/298 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P+  TY + +    K G++ EA  + E+M    + P  VTY++LI+G C    
Sbjct: 251 MIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D MV +G  P   +YN LI+     +++ +   + ++M ++G+V +++TYN 
Sbjct: 311 IDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNT 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+ + G+  KA     +M   G+ P + TY  L+  L     + +A  +FE+     
Sbjct: 371 LIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSE 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  DIV +  +I G C  G +E A+ L   +    + PD VTY T+M G C +G   E  
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVE 490

Query: 241 RLLDQMKRRGI-KPDHISFNPTRLTYNALIQGLCKNQEGD--LAEELLREMVSKGITP 295
            L  +MK+ G+ K D +               LC   +GD  ++ EL+++M+S G  P
Sbjct: 491 ALYTKMKQEGLMKNDSM---------------LCLG-DGDITISAELIKKMLSCGYAP 532



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 132/257 (51%), Gaps = 7/257 (2%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +   EMVK    P+   +N L+  ++  +K      + K+M   GI  D  T+NI
Sbjct: 66  LHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN +C C     A S+  +M+  G +P  +T  SL+    ++NR+ +A  L +  +  G
Sbjct: 126 VINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +NA+ID  C    +  A    KE+ R  + P+ VTY  L++G C  G+  +A 
Sbjct: 186 YRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAA 245

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL  M +R I P+ I       TY+AL+    KN +   A+E+  EMV   I PD  TY
Sbjct: 246 RLLRDMIKRKITPNVI-------TYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTY 298

Query: 301 FSLIEGIASVDKAAESS 317
            SLI G+   D+  E++
Sbjct: 299 SSLINGLCLHDRIDEAN 315


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 164/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+    Y +   + G+CK G L EA  M ++M   G  P  VT   L+ GYC KGN
Sbjct: 246 MIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGN 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++MA    D + + G      TYN+ IH      ++ +A  +  EM  +G+VP+ +TYN 
Sbjct: 306 VDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNS 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A+ +   M   G+ P ++T   L+  L K  R+ +A  LF   +  G
Sbjct: 366 LIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  LI G CT+  +  A +LL++M    + P  VTY+ L+ G CR G++  A 
Sbjct: 426 LTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAW 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL++M  +G  PD I       TY+ L+  L K Q  D A  L  +M+ +G+ PD   Y
Sbjct: 486 RLLNEMHVKGPLPDTI-------TYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCY 538

Query: 301 FSLIEGIASVDKAAESSN 318
             +I+G    ++  E+ N
Sbjct: 539 TIMIDGYCKSERIDEAIN 556



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 160/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG +P+  T  + + G C +G ++ A  + + + E G      TYN  I GYC  G 
Sbjct: 281 MVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGR 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    DEM ++G++P   TYN LI  L    ++  A +++K M   G+ PD +T  I
Sbjct: 341 VRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCI 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+     +A  L ++++  G+ P + +YT LI       RM EA  L  +   K 
Sbjct: 401 LLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKN 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P IV ++ LIDG C +G I  A+ LL EM      PD +TY+ L+    ++  ++EA 
Sbjct: 461 LVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAV 520

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L +QM +RG++PD        + Y  +I G CK++  D A  L REM  K + PD  TY
Sbjct: 521 FLFNQMIKRGLEPD-------VMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTY 573

Query: 301 FSLIEGI 307
             L   +
Sbjct: 574 TILFNAV 580



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+ +   Y   +  +C+ G ++E      +M  NG+ P   TY +LI G C  G     F
Sbjct: 181 VKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGF 240

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM+++G+  +   + +LI  L     +VEA +M  EM  +G  P+ +T   L+ GY
Sbjct: 241 GLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGY 300

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  GN   A  L D +   G +  + TY   I    K  R+ +A ++F+    +G++P+I
Sbjct: 301 CLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNI 360

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N+LID  C  G +  A+ ++K M R  + PD VT   L+ G C+  ++++A  L +Q
Sbjct: 361 VTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQ 420

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +   G+ PD  S       Y  LI G C ++    A  LLR+M  K + P   TY  LI+
Sbjct: 421 LVESGLTPDVWS-------YTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLID 473

Query: 306 GIA 308
           G+ 
Sbjct: 474 GLC 476



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 150/287 (52%), Gaps = 13/287 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+  TY S +  +CK G +  A  +++ M  +GL P  VT   L+DG C    
Sbjct: 351 MCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKR 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +++V+ G+ P   +Y +LIH     R+M EA ++L++M  K +VP  +TY+ 
Sbjct: 411 LDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSC 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR G    A+ L +EM  KG  P  +TY+ L+  L K+  + EA  LF   + +G
Sbjct: 471 LIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRG 530

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +  +IDG+C +  I+ A +L +EM    + PD VTY  L +   + G      
Sbjct: 531 LEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEW 590

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD---LAEEL 284
           + ++ +  R I P      P  L Y   +  LCK++  D   LA E 
Sbjct: 591 KFVNVI--RDINPP-----PRVLKY---LAALCKSEHLDYKCLASEF 627



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 163/322 (50%), Gaps = 15/322 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE------NGLVP--TAVTYNTLIDGYC 56
           G   +  +YG  ++G+C+ GR+ EA  +L  +++      +G       V Y+ +ID  C
Sbjct: 137 GFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLC 196

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
             G ++  F F +EM+  G+ P   TY  LI  L    K +E   ++ EM  +G+     
Sbjct: 197 RNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVY 256

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            + +LI+G C+ G   +A  + DEM+++G +P ++T T+L+     +  +  A +LF+  
Sbjct: 257 VFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAI 316

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
              G   D+  +N  I G+C  G +  A  +  EM R  V P+ VTYN+L+   C+ G+V
Sbjct: 317 GEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEV 376

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             A  ++  M R G+ PD +       T   L+ GLCK++  D A  L  ++V  G+TPD
Sbjct: 377 SGAWEIVKTMHRSGLTPDIV-------TCCILLDGLCKSKRLDQAILLFNQLVESGLTPD 429

Query: 297 DNTYFSLIEGIASVDKAAESSN 318
             +Y  LI G  +  +  E+ N
Sbjct: 430 VWSYTILIHGCCTSRRMGEAMN 451



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 21/316 (6%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG   D+    + + G+C  G + +A    +++  NG     V+Y  LI+G C  G +  
Sbjct: 101 RGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNE 160

Query: 64  AFSF-----------RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
           A +            +D    +G       Y+++I  L     + E  +   EM   G+ 
Sbjct: 161 AVNLLRMIEKEKEKEKDGFFVKG---NVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVC 217

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           P+  TY  LI G C  G   + F L DEMI +G+  ++  +T LI  L K   ++EA ++
Sbjct: 218 PNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREM 277

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           F+  + +G  P+IV   AL+ G+C  GN++ A  L   +       D  TYN  +HG C+
Sbjct: 278 FDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCK 337

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            G+V +A R+ D+M R G+ P+ +       TYN+LI  LCK  E   A E+++ M   G
Sbjct: 338 VGRVRDAVRVFDEMCREGVVPNIV-------TYNSLIDCLCKAGEVSGAWEIVKTMHRSG 390

Query: 293 ITPDDNTYFSLIEGIA 308
           +TPD  T   L++G+ 
Sbjct: 391 LTPDIVTCCILLDGLC 406



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            +F   L +G   D V  N ++ G C NG + +A     E+       +EV+Y  L++G 
Sbjct: 93  SIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGL 152

Query: 231 CRQGKVEEARRLLDQM-KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
           C  G+V EA  LL  + K +  + D        + Y+ +I  LC+N   D   E   EM+
Sbjct: 153 CENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMM 212

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAE 315
             G+ P++ TY SLI G+  V K  E
Sbjct: 213 GNGVCPNEFTYGSLIRGLCGVGKFLE 238


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 180/358 (50%), Gaps = 46/358 (12%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  T+ + ++G+C+EGR+ EA  +L++M E+GL P  +TY T++DG C  G+   A +
Sbjct: 176 KPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALN 235

Query: 67  FRDEMVK-QGIMPTASTYNL-----LIHELLMERKMVEADDMLKEMGE-KGIVPDSITYN 119
              +M +   I P    + L     +I+      +  EA  +L+EM E K I PD +TYN
Sbjct: 236 LLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYN 295

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LIN + + G   +A  L+DEM+ +GI P+ +TY+S+I    KQNR+  A+ +F     K
Sbjct: 296 ALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATK 355

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI+ FN LI G+C    ++    LL EM    +  + +TY TL+HG C+ G +  A
Sbjct: 356 GCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAA 415

Query: 240 RRLLDQMKRRGIKPDHISFN---------------------------------------P 260
           + LL +M   G+ P+ ++ N                                       P
Sbjct: 416 QDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEP 475

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TYN LI GL    +   AEEL  EM  +GI PD  TY S+I G+    +  E++ 
Sbjct: 476 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQ 533



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 155/302 (51%), Gaps = 19/302 (6%)

Query: 17  VSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
           ++G C  GR  EA ++L++M E   + P  VTYN LI+ +  +G    A    DEM+ +G
Sbjct: 262 INGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 321

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I+P+  TY+ +I     + ++  A+ M   M  KG  PD IT+N LI GYCR        
Sbjct: 322 IIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGI 381

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            L  EM   G+    +TYT+LI    +   +  A  L +  ++ G+ P++V  N L+DG 
Sbjct: 382 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGL 441

Query: 196 CTNGNIERAFSLLKEMDRMK-----------VHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           C NG ++ A  + K M + K           V PD  TYN L+ G   +GK  EA  L +
Sbjct: 442 CDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 501

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  RGI PD I       TYN++I GLCK    D A ++   M SK  +P+  T+ +LI
Sbjct: 502 EMPHRGIVPDTI-------TYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI 554

Query: 305 EG 306
            G
Sbjct: 555 NG 556



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 168/321 (52%), Gaps = 18/321 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ + + PD  TY + ++   KEG+  EA  + ++M   G++P+ +TY+++IDG+C +  
Sbjct: 282 LERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNR 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M  +G  P   T+N LI      +++ +   +L EM E G+V ++ITY  
Sbjct: 342 LDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTT 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           LI+G+C+ G+   A  L  EM+  G+ P ++T  +L+  L    ++ +A ++F+      
Sbjct: 402 LIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 461

Query: 180 ----------GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
                     G+ PD+  +N LI G    G    A  L +EM    + PD +TYN+++HG
Sbjct: 462 MDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHG 521

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+Q +++EA ++ D M  +       SF+P  +T+  LI G CK    D   EL  EM 
Sbjct: 522 LCKQSRLDEATQMFDSMGSK-------SFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 574

Query: 290 SKGITPDDNTYFSLIEGIASV 310
            +GI  +  TY +LI G   V
Sbjct: 575 RRGIVANAITYITLIHGFRKV 595



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 161/320 (50%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P + TY S + G CK+ RL+ A  M   M   G  P  +T+NTLI GYC    
Sbjct: 317 MLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKR 376

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM + G++    TY  LIH       +  A D+L+EM   G+ P+ +T N 
Sbjct: 377 VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNT 436

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------IHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           L++G C  G  K A  +   M              G++P + TY  LI  L  + + +EA
Sbjct: 437 LLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEA 496

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++L+E    +G++PD + +N++I G C    ++ A  +   M      P+ VT+ TL++G
Sbjct: 497 EELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 556

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G+V++   L  +M RRGI  + I       TY  LI G  K    + A ++ +EM+
Sbjct: 557 YCKAGRVDDGLELFCEMGRRGIVANAI-------TYITLIHGFRKVGNINGALDIFQEMM 609

Query: 290 SKGITPDDNTYFSLIEGIAS 309
           + G+ PD  T  +++ G+ S
Sbjct: 610 ASGVYPDTITIRNMLTGLWS 629



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 158/299 (52%), Gaps = 18/299 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD  T+ + ++G C+  R+++  ++L +M E GLV   +TY TLI G+C  G+
Sbjct: 352 MATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGD 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
           L  A     EMV  G+ P   T N L+  L    K+ +A +M K M +            
Sbjct: 412 LNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFN 471

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ PD  TYNILI+G    G   +A  L++EM H+GI P  +TY S+I  L KQ+R+ EA
Sbjct: 472 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEA 531

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            Q+F++  +K   P++V F  LI+G+C  G ++    L  EM R  +  + +TY TL+HG
Sbjct: 532 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHG 591

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
             + G +  A  +  +M   G+ PD I       T   ++ GL   +E   A  +L ++
Sbjct: 592 FRKVGNINGALDIFQEMMASGVYPDTI-------TIRNMLTGLWSKEELKRAVAMLEDL 643



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 158/306 (51%), Gaps = 18/306 (5%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +  + + GRL+    +  +M+   +   A ++  L+  +C+   L  A S 
Sbjct: 76  PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALST 135

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             ++ K G  PT  T++ L+H L +E ++ EA D+  +M +    P+ +T+  L+NG CR
Sbjct: 136 FGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCK----PNVVTFTTLMNGLCR 191

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PDIV 186
            G   +A +L D M+  G+QP  +TY +++  + K    + A  L         + P++V
Sbjct: 192 EGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVV 251

Query: 187 MF-----NALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++       +I+G C++G    A  LL+EM +R K+ PD VTYN L++   ++GK  EA 
Sbjct: 252 IWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAE 311

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M  RGI P  I       TY+++I G CK    D AE +   M +KG +PD  T+
Sbjct: 312 ELYDEMLPRGIIPSTI-------TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITF 364

Query: 301 FSLIEG 306
            +LI G
Sbjct: 365 NTLIAG 370



 Score =  156 bits (395), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 170/358 (47%), Gaps = 53/358 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R V  ++Y++   +   C   +L  A     ++ + G  PT VT++TL+ G C +  
Sbjct: 104 MEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDR 163

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-- 118
           +  A     +M K    P   T+  L++ L  E ++VEA  +L  M E G+ P+ ITY  
Sbjct: 164 ISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGT 219

Query: 119 ---------------------------------------NILINGYCRCGNAKKAFSLHD 139
                                                    +ING+C  G   +A  L  
Sbjct: 220 IVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQ 279

Query: 140 EMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           EM+  K I P ++TY +LI    K+ +  EA++L++  L +G++P  + ++++IDG C  
Sbjct: 280 EMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQ 339

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
             ++ A  +   M      PD +T+NTL+ G CR  +V++  +LL +M   G+  + I  
Sbjct: 340 NRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTI-- 397

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                TY  LI G C+  + + A++LL+EMVS G+ P+  T  +L++G+    K  ++
Sbjct: 398 -----TYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDA 450



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 138/258 (53%), Gaps = 11/258 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  ++ TY + + G C+ G L  A  +L++M  +G+ P  VT NTL+DG C+ G 
Sbjct: 387 MTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGK 446

Query: 61  LEMAFSFRDEMVKQ-----------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           L+ A      M K            G+ P   TYN+LI  L+ E K +EA+++ +EM  +
Sbjct: 447 LKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 506

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           GIVPD+ITYN +I+G C+     +A  + D M  K   P ++T+T+LI    K  R+ + 
Sbjct: 507 GIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 566

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +LF     +G++ + + +  LI G    GNI  A  + +EM    V+PD +T   ++ G
Sbjct: 567 LELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTG 626

Query: 230 RCRQGKVEEARRLLDQMK 247
              + +++ A  +L+ ++
Sbjct: 627 LWSKEELKRAVAMLEDLQ 644



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 152/299 (50%), Gaps = 20/299 (6%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LE+A  +   M  +  +P+ + +  L+      G L++  S   +M  + +   A ++ +
Sbjct: 59  LEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTI 118

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+       K+  A     ++ + G  P  +T++ L++G C      +A  L     H+ 
Sbjct: 119 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDL----FHQM 174

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++T+T+L+  L ++ R++EA  L +  L  G+ P+ + +  ++DG C  G+   A 
Sbjct: 175 CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSAL 234

Query: 206 SLLKEMDRMK-VHPDEVTY-----NTLMHGRCRQGKVEEARRLLDQM-KRRGIKPDHISF 258
           +LL++M+ +  + P+ V +       +++G C  G+  EA++LL +M +R+ I PD +  
Sbjct: 235 NLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVV-- 292

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK--AAE 315
                TYNALI    K  +   AEEL  EM+ +GI P   TY S+I+G    ++  AAE
Sbjct: 293 -----TYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAE 346



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 8/268 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           L  G+     LE A     +MV+   +P+   +  L+  ++   ++     + ++M  + 
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           +  ++ ++ IL+  +C C     A S   ++   G  PT++T+++L+  L  ++R+ EA 
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEAL 168

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            LF         P++V F  L++G C  G +  A +LL  M    + P+++TY T++ G 
Sbjct: 169 DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGM 224

Query: 231 CRQGKVEEARRLLDQMKRRG-IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
           C+ G    A  LL +M+    IKP+ + +   R T   +I G C +     A++LL+EM+
Sbjct: 225 CKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRT--CMINGFCSSGRWSEAQQLLQEML 282

Query: 290 S-KGITPDDNTYFSLIEGIASVDKAAES 316
             K I+PD  TY +LI       K  E+
Sbjct: 283 ERKKISPDVVTYNALINAFVKEGKFFEA 310



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 14/212 (6%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           GE G   +S+    L +G+      + A  L  +M+     P+++ +  L+ V+ +  R+
Sbjct: 38  GESGFGGESLK---LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRL 94

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
                L      + +  +   F  L+   C+   +  A S   ++ ++  HP  VT++TL
Sbjct: 95  DVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTL 154

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           +HG C + ++ EA  L  QM +           P  +T+  L+ GLC+      A  LL 
Sbjct: 155 LHGLCVEDRISEALDLFHQMCK-----------PNVVTFTTLMNGLCREGRVVEAVALLD 203

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            M+  G+ P+  TY ++++G+  +     + N
Sbjct: 204 RMLEDGLQPNQITYGTIVDGMCKMGDTVSALN 235


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 160/312 (51%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P   TY   +   CKE    +A  +L++M+  G  P  VTYN LI+  CN+G+
Sbjct: 277 MLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGD 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    +   G  P A TY  ++  L    +  E +++L EM      PD +T+N 
Sbjct: 337 VDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNT 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C+ G   +A  + D M   G    ++TY+S++  L    R+ +A +L     + G
Sbjct: 397 IVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +  ++ G C+    ERA  L+ EM      PDEVT+NT++   C++G V+ A 
Sbjct: 457 CKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAI 516

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+++QM   G  PD +       TYN +I GLC     D A ELL ++ S G  PD  T+
Sbjct: 517 RVVEQMSENGCSPDIV-------TYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTF 569

Query: 301 FSLIEGIASVDK 312
            +L++G+  VD+
Sbjct: 570 NTLLKGLCGVDR 581



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY + V+G C+ GR+E+A R++  M      P   T+N LI   C +G +  A +  D+M
Sbjct: 221 TYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALAVFDDM 277

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           + +G  P+  TY++L+     E    +A  +L EM  KG  PD +TYN+LIN  C  G+ 
Sbjct: 278 LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDV 337

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A ++   +   G +P  +TYT ++  L    R  E ++L     +    PD V FN +
Sbjct: 338 DEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTI 397

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           +   C  G ++RA  ++  M       D VTY++++ G C  G+V++A  LL ++K  G 
Sbjct: 398 VTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGC 457

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS-- 309
           KPD I+       Y  +++GLC  ++ + AEEL+ EM+     PD+ T+ +++  +    
Sbjct: 458 KPDTIA-------YTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKG 510

Query: 310 -VDKA 313
            VD+A
Sbjct: 511 LVDRA 515



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 156/308 (50%), Gaps = 9/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      PD  T+ + V+ +C++G ++ A R++EQM ENG  P  VTYN +IDG CN+  
Sbjct: 487 MLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESC 546

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     ++   G  P   T+N L+  L    +  +A+ ++  M      PD +T+N 
Sbjct: 547 IDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNT 606

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G   +A      M   G  P   TY+ ++  L K  +   A +L    +  G
Sbjct: 607 VITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSG-MTNG 665

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N +I      G +E A  LL+ M    + PD  TY +L +G CR+   + A 
Sbjct: 666 T-PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAV 724

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+L +++  G+ PD  +F      YN ++ G C+++  DLA +    MVS G  PD++TY
Sbjct: 725 RMLRRVQDTGLSPD-TTF------YNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTY 777

Query: 301 FSLIEGIA 308
             L+E +A
Sbjct: 778 VILLEALA 785



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 152/313 (48%), Gaps = 7/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +PD+ TY   +  +C   R +E   +L +M  N   P  VT+NT++   C +G 
Sbjct: 347 LPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGL 406

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M + G +    TY+ ++  L    ++ +A ++L  +   G  PD+I Y  
Sbjct: 407 VDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTT 466

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C     ++A  L  EM+     P  +T+ +++  L ++  +  A ++ E     G
Sbjct: 467 VLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENG 526

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N +IDG C    I+ A  LL ++      PD VT+NTL+ G C   + E+A 
Sbjct: 527 CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAE 586

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L+  M R    PD        LT+N +I  LC+      A E L+ M   G  P+ +TY
Sbjct: 587 QLMANMMRSNCPPDE-------LTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTY 639

Query: 301 FSLIEGIASVDKA 313
             +++ +    KA
Sbjct: 640 SIVVDALLKAGKA 652



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 149/311 (47%), Gaps = 9/311 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   D  TY S + G+C  GR+++A  +L ++K  G  P  + Y T++ G C+   
Sbjct: 417 MSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQ 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EM+     P   T+N ++  L  +  +  A  ++++M E G  PD +TYN 
Sbjct: 477 WERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNC 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C       A  L  ++   G +P ++T+ +L+  L   +R  +A+QL  N +   
Sbjct: 537 IIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSN 596

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + FN +I   C  G + +A   LK M      P+  TY+ ++    + GK + A 
Sbjct: 597 CPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAAL 656

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M          +  P  +TYN +I  L K  + + A +LLR MVS G+ PD  TY
Sbjct: 657 ELLSGMT---------NGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTY 707

Query: 301 FSLIEGIASVD 311
            SL  G+   D
Sbjct: 708 RSLAYGVCRED 718



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY   + G+C E  +++A  +L  ++  G  P  VT+NTL+ G C    
Sbjct: 522 MSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDR 581

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      M++    P   T+N +I  L  +  + +A + LK M E G VP+S TY+I
Sbjct: 582 WEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSI 641

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++   + G A+ A  L   M +    P ++TY ++I  L+K  +M EA  L    ++ G
Sbjct: 642 VVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNG 699

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   + +L  G C     +RA  +L+ +    + PD   YN ++ G CR  + + A 
Sbjct: 700 LCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAI 759

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
                M   G  PD         TY  L++ L      D A+ LL  + S G+
Sbjct: 760 DCFAHMVSSGCMPDES-------TYVILLEALAYGGLLDEAKRLLASLCSLGV 805



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 19/299 (6%)

Query: 22  KEGRLEEASRMLEQMKENGL--VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + G ++EA  + + M   G    P  V  N LI   C+ G +  A     E V   + P+
Sbjct: 162 QRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDA-----ERVFAALGPS 216

Query: 80  AS--TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           A+  TYN +++      ++ +A  ++  M      PD+ T+N LI   C  G    A ++
Sbjct: 217 ATVVTYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDALAV 273

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
            D+M+H+G  P+++TY+ L+    K++   +A  L +   AKG  PDIV +N LI+  C 
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G+++ A ++L  +      PD VTY  ++   C   + +E   LL +M      PD ++
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT 393

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           FN        ++  LC+    D A E++  M   G   D  TY S+++G+  V +  ++
Sbjct: 394 FN-------TIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDA 445



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 2/182 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+S TY   V  + K G+ + A  +L  M  NG  P  +TYNT+I      G 
Sbjct: 627 MAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT-NG-TPDLITYNTVISNLTKAGK 684

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      MV  G+ P  +TY  L + +  E     A  ML+ + + G+ PD+  YN 
Sbjct: 685 MEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYND 744

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G+CR      A      M+  G  P   TY  L+  L+    + EA +L  +  + G
Sbjct: 745 VLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLG 804

Query: 181 ML 182
           +L
Sbjct: 805 VL 806


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 163/300 (54%), Gaps = 7/300 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+ +G++ D+ TY + +SG+   GR  +A+R+L  M +  + P  + +  LID +  +GN
Sbjct: 735  MEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 794

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A +   EM+++ ++P   TYN LI+   +   + +A  M   M  KG  PD +TYN 
Sbjct: 795  LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 854

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI G+C+    +    L  EM ++G+     TY +LI    +  ++  A ++F   +  G
Sbjct: 855  LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 914

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PDIV +N L+D  C NG IE+A  +++++ + ++  D +TYN ++ G CR  K++EA 
Sbjct: 915  VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAW 974

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L   + R+G+KPD I+       Y  +I GLC+      A++L R M   G  P +  Y
Sbjct: 975  CLFRSLTRKGVKPDAIA-------YITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 1027



 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 169/336 (50%), Gaps = 28/336 (8%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G +P   T GS ++G C+  R +EA  +++ M   G VP  V YNT+I+G C   +
Sbjct: 665  MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 724

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A      M K+GI   A TYN LI  L    +  +A  +L++M ++ I P+ I +  
Sbjct: 725  LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 784

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+ + + GN  +A +L+ EMI + + P + TY SLI        + +A  +F+  ++KG
Sbjct: 785  LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 844

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              PD+V +N LI G C +  +E    L  EM    +  D  TYNTL+HG C+ GK+  A+
Sbjct: 845  CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 904

Query: 241  RLLDQMKRRGIKPDHISFNPTR----------------------------LTYNALIQGL 272
            ++ ++M   G+ PD +++N                               +TYN +IQGL
Sbjct: 905  KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGL 964

Query: 273  CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            C+  +   A  L R +  KG+ PD   Y ++I G+ 
Sbjct: 965  CRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLC 1000



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 165/336 (49%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P   T+GS + G C   R+ +A  ++  M ++G  P  V YNTLIDG C  G 
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGE 191

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A    +EM K+G+     TYN L+  L    +  +A  ML++M ++ I PD +T+  
Sbjct: 192 LNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTA 251

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + GN  +A  L+ EMI   + P  +TY S+I  L    R+ +A + F+   +KG
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N LI G C    ++    L + M     + D  TYNTL+HG C+ GK+  A 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 241 RLLDQMKRRGIKPDHIS--------------------FNPTR--------LTYNALIQGL 272
            +   M  R + PD I+                    F+  R        + YN +I GL
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + + A EL   +  +G+ PD  TY  +I G+ 
Sbjct: 432 CKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLC 467



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 153/299 (51%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+  D  TY + ++G+C  GR  +A+RML  M +  + P  VT+  LID +  +GN
Sbjct: 202 MEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGN 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM++  + P   TYN +I+ L M  ++ +A      M  KG  P+ +TYN 
Sbjct: 262 LDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNT 321

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+     +   L   M  +G    + TY +LI    +  ++  A  +F   +++ 
Sbjct: 322 LISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRR 381

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+    L+ G C NG IE A     +M   + +   V YN ++HG C+  KVE+A 
Sbjct: 382 VTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAW 441

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L  ++   G+KPD         TY  +I GLCKN     A+EL+R M  +GI    N 
Sbjct: 442 ELFCRLPVEGVKPD-------ARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493



 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 165/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D Y++   +   C+  RL  A  +L +M + G  P+ VT+ +L+ G+C    
Sbjct: 97  MELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNR 156

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AFS    MVK G  P    YN LI  L    ++  A ++L EM +KG+  D +TYN 
Sbjct: 157 IGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  +  +M+ + I P ++T+T+LI V  KQ  + EA +L++  +   
Sbjct: 217 LLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSS 276

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +N++I+G C +G +  A      M      P+ VTYNTL+ G C+   V+E  
Sbjct: 277 VDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGM 336

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G       FN    TYN LI G C+  +  +A ++   MVS+ +TPD  T+
Sbjct: 337 KLFQRMSCEG-------FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389

Query: 301 FSLIEGIASVDKAAESS 317
             L+ G+  V+   ES+
Sbjct: 390 CILLHGLC-VNGEIESA 405



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 165/309 (53%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  D Y++   +   C+  RL  A  +L +M + G  P+ VT  +L++G+C    
Sbjct: 630 MENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNR 689

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  D M   G +P    YN +I+ L   R +  A ++   M +KGI  D++TYN 
Sbjct: 690 FQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNT 749

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G    G    A  L  +M+ + I P ++ +T+LI    K+  ++EA  L++  + + 
Sbjct: 750 LISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRS 809

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++  +N+LI+G C +G +  A  +   M      PD VTYNTL+ G C+  +VE+  
Sbjct: 810 VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGM 869

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M  +G+  D         TYN LI G C+  + ++A+++   MV  G++PD  TY
Sbjct: 870 KLFCEMTYQGLVGD-------AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTY 922

Query: 301 FSLIEGIAS 309
             L++ + +
Sbjct: 923 NILLDCLCN 931



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 140/275 (50%), Gaps = 1/275 (0%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  R + P+   + + +    KEG L EA  + ++M    +VP   TYN+LI+G+C  G 
Sbjct: 770  MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 829

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A    D MV +G  P   TYN LI      +++ +   +  EM  +G+V D+ TYN 
Sbjct: 830  LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 889

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+GYC+ G    A  + + M+  G+ P ++TY  L+  L    ++ +A  + E+     
Sbjct: 890  LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 949

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            M  DI+ +N +I G C    ++ A+ L + + R  V PD + Y T++ G CR+G   EA 
Sbjct: 950  MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 1009

Query: 241  RLLDQMKRRGIKPDHISFNPT-RLTYNALIQGLCK 274
            +L  +MK  G  P    ++ T R  Y +L   L K
Sbjct: 1010 KLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIK 1044



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 147/288 (51%), Gaps = 7/288 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           R E      ++M+  G+     ++  LI  +C    L  A S   +M+K G  P+  T+ 
Sbjct: 86  RYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFG 145

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            L+H   +  ++ +A  ++  M + G  P+ + YN LI+G C+ G    A  L +EM  K
Sbjct: 146 SLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKK 205

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+   ++TY +L+  L    R  +A ++  + + + + PD+V F ALID     GN++ A
Sbjct: 206 GLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEA 265

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L KEM +  V P+ VTYN++++G C  G++ +A++  D M  +G  P+ +       T
Sbjct: 266 QELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVV-------T 318

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           YN LI G CK +  D   +L + M  +G   D  TY +LI G   V K
Sbjct: 319 YNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++SR + P    +   ++ + K  + +    +  +M+  G+     ++  LI  +C    
Sbjct: 596 LQSRPI-PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSR 654

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A +   +M+K G  P+  T   L++      +  EA  ++  M   G VP+ + YN 
Sbjct: 655 LSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNT 714

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+  +   A  +   M  KGI+   +TY +LI  LS   R  +A +L  + + + 
Sbjct: 715 VINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK 774

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ F ALID     GN+  A +L KEM R  V P+  TYN+L++G C  G + +A+
Sbjct: 775 IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAK 834

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + D M  +G  PD +       TYN LI G CK++  +   +L  EM  +G+  D  TY
Sbjct: 835 YMFDLMVSKGCFPDVV-------TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTY 887

Query: 301 FSLIEGIASVDK 312
            +LI G     K
Sbjct: 888 NTLIHGYCQAGK 899



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 132/255 (51%), Gaps = 7/255 (2%)

Query: 54  GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           G+ +    E AF+   EMV    +P+   +  L+      R+        ++M   GI  
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  ++ ILI+ +CRC     A S+  +M+  G +P+++T+ SL+      NR+ +A  L 
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
              +  G  P++V++N LIDG C NG +  A  LL EM++  +  D VTYNTL+ G C  
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G+  +A R+L  M +R I PD +       T+ ALI    K    D A+EL +EM+   +
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVV-------TFTALIDVFVKQGNLDEAQELYKEMIQSSV 277

Query: 294 TPDDNTYFSLIEGIA 308
            P++ TY S+I G+ 
Sbjct: 278 DPNNVTYNSIINGLC 292



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 28/273 (10%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AFS   EM++   +P+   +  ++  +    K      +  +M   GI  D  ++ ILI+
Sbjct: 588 AFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 647

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +CRC     A +L  +M+  G +P+++T  SL+    + NR  EA  L ++    G +P
Sbjct: 648 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 707

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++V++N +I+G C N ++  A  +   M++  +  D VTYNTL+ G    G+  +A RLL
Sbjct: 708 NVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLL 767

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
             M +R I P+ I F                             P   TYN+LI G C +
Sbjct: 768 RDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIH 827

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                A+ +   MVSKG  PD  TY +LI G  
Sbjct: 828 GCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFC 860



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 151/325 (46%), Gaps = 23/325 (7%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD+ TY   + G+CK G   EA  ++ +MKE G++      +  ++ + +  N E++
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEH-SSSNKEIS 509

Query: 65  FSFRD--------EMVKQGIMPTASTYNL----LIHELLMERKMVEADDMLKEMGEKGIV 112
            S R+            Q ++P A + ++      H LL+ER       + +        
Sbjct: 510 LSLREIWERSKSNPFWMQRLIPIAFSSSVKGFVRRHYLLLERGNNPETSLSRSFSG---A 566

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
                Y   +     C     AFSL  EM+     P+++ +T ++ V++K N+      L
Sbjct: 567 SHHHHYRERLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYL 626

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           +      G+  D+  F  LI   C    +  A +LL +M ++   P  VT  +L++G C+
Sbjct: 627 YHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQ 686

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
             + +EA  L+D M       D   F P  + YN +I GLCKN++ + A E+   M  KG
Sbjct: 687 GNRFQEAVSLVDSM-------DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKG 739

Query: 293 ITPDDNTYFSLIEGIASVDKAAESS 317
           I  D  TY +LI G+++  +  +++
Sbjct: 740 IRADAVTYNTLISGLSNSGRWTDAA 764



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 7/184 (3%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           AF+L  EM+H    P+++ +T L+   +   R        +     G+  D+  F  LI 
Sbjct: 55  AFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH 114

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C    +  A S+L +M ++   P  VT+ +L+HG C   ++ +A  L+  M + G   
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG--- 171

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
               + P  + YN LI GLCKN E ++A ELL EM  KG+  D  TY +L+ G+    + 
Sbjct: 172 ----YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 314 AESS 317
           ++++
Sbjct: 228 SDAA 231


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 164/310 (52%), Gaps = 12/310 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           + G   D +TY + V+ + K  +++EA  ++E++  NG  PT  TYN L++G C  G LE
Sbjct: 252 TNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLE 311

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     ++V  G  P   TY  LI  L  E++  EA  + KEM  +G+  D++ Y  LI
Sbjct: 312 EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALI 371

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G  + G   +A S++  M   G  P ++T +++I  LSK  R+  A ++F++  A+G+ 
Sbjct: 372 RGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 431

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+ V+++ALI G C    ++ A  +L +M +    PD +TYN L+ G C+ G VE AR  
Sbjct: 432 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 491

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M   G KPD         TYN LI GLCK    D A  +L +M S         Y S
Sbjct: 492 FDEMLEAGCKPD-------VYTYNILISGLCKAGNTDAACGVLDDMSSSRF-----VYSS 539

Query: 303 LIEGIASVDK 312
           L++G+    K
Sbjct: 540 LVDGLCKSGK 549



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 7/304 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R +   + T+   ++G+ K G + +A  + ++   NG      TY  +++       ++ 
Sbjct: 218 RSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQE 277

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A +  +++   G  PT +TYN L++ L    ++ EA D+L+++ + G  PD +TY  LI+
Sbjct: 278 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 337

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G  +   + +A+ L  EM  +G+    + YT+LI  L +  ++ +A  +++   + G +P
Sbjct: 338 GLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVP 397

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V  + +IDG    G I  A  + K M+   + P+EV Y+ L+HG C+  K++ A  +L
Sbjct: 398 DVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 457

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            QMK+    PD I       TYN LI GLCK+ + + A     EM+  G  PD  TY  L
Sbjct: 458 AQMKKAFCTPDTI-------TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 510

Query: 304 IEGI 307
           I G+
Sbjct: 511 ISGL 514



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 161/312 (51%), Gaps = 15/312 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG+  D+  Y + + G+ + G++ +AS + + M  +G VP  VT +T+IDG    G 
Sbjct: 355 MASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGR 414

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +G+ P    Y+ LIH L   RKM  A +ML +M +    PD+ITYNI
Sbjct: 415 IGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNI 474

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A +  DEM+  G +P + TY  LI  L K      A  + ++     
Sbjct: 475 LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDD----- 529

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M     ++++L+DG C +G +E    L  EM+R  V   +     + H  C+  +V+EA 
Sbjct: 530 MSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFH-LCKANRVDEAV 588

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L + +++ G+        P    YN++I  L K+ + +  + + +EM ++   PD  TY
Sbjct: 589 SLFNAIRKEGM--------PHPYAYNSIISALIKSGKVNEGQAVYQEM-TRWWKPDRVTY 639

Query: 301 FSLIEGIASVDK 312
            +L+ G+   ++
Sbjct: 640 NALLNGMIGANR 651



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 30/330 (9%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +PD  T+   ++G C     EEA  ++ +M+E+ G+ P+  T+N ++ G C  G +  A 
Sbjct: 151 RPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAM 210

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               E V++ +  +A+T+++LI+ L+    M++A  + +E    G   D  TY  ++N  
Sbjct: 211 D-HFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWL 269

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            +    ++A +L +++   G  PT+ TY +L+  L K  R+ EA  L    +  G  PD+
Sbjct: 270 AKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 329

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V + +LIDG         A+ L KEM    +  D V Y  L+ G  + GK+ +A  +   
Sbjct: 330 VTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKT 389

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
           M   G  PD ++ +                            P  + Y+ALI GLCK ++
Sbjct: 390 MTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 449

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            D A E+L +M     TPD  TY  LI+G+
Sbjct: 450 MDCALEMLAQMKKAFCTPDTITYNILIDGL 479



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 9/309 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G Q   +T  + +    +  R  EA  +L+        P   T+N LI GYC     E A
Sbjct: 114 GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEA 173

Query: 65  FSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           F+   EM +  G+ P+  T+NL++H L    K++ A D   E   + +   + T++ILIN
Sbjct: 174 FAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHF-EAVRRSMPVSAATFSILIN 232

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G  + G   +A SL  E    G    + TYT+++  L+K  ++ EA  L E   A G  P
Sbjct: 233 GLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTP 292

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            I  +NAL++G C  G +E A  LL+++      PD VTY +L+ G  ++ +  EA +L 
Sbjct: 293 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLF 352

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M  RG+  D +        Y ALI+GL +  +   A  + + M S G  PD  T  ++
Sbjct: 353 KEMASRGLALDTV-------CYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTM 405

Query: 304 IEGIASVDK 312
           I+G++   +
Sbjct: 406 IDGLSKAGR 414



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 139/282 (49%), Gaps = 27/282 (9%)

Query: 47  TYNTLIDGYCN------KGNL---EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
           T N L+D +         GNL   E+A  FR         P   T+N+LI    + R+  
Sbjct: 121 TGNALLDVFARTKRHREAGNLLKNELATIFR---------PDVETWNVLITGYCLAREPE 171

Query: 98  EADDMLKEMGEK-GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
           EA  +++EM E  G+ P   T+N++++G C+ G    A   H E + + +  +  T++ L
Sbjct: 172 EAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMD-HFEAVRRSMPVSAATFSIL 230

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I  L K   MI+A  L +     G   DI  + A+++    N  I+ A +L++++     
Sbjct: 231 INGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGC 290

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P   TYN L++G C+ G++EEA  LL ++   G  PD +       TY +LI GL K +
Sbjct: 291 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV-------TYTSLIDGLGKEK 343

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               A +L +EM S+G+  D   Y +LI G+    K  ++S+
Sbjct: 344 RSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASS 385



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 9/243 (3%)

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G   +  T N L+      ++  EA ++LK        PD  T+N+LI GYC     ++A
Sbjct: 114 GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEA 173

Query: 135 FSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           F++  EM    G+ P++ T+  ++  L K  +++ A   FE  + + M      F+ LI+
Sbjct: 174 FAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEA-VRRSMPVSAATFSILIN 232

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
           G    G + +A SL +E        D  TY  +++   +  K++EA  L++++   G   
Sbjct: 233 GLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGC-- 290

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
                 PT  TYNAL+ GLCK    + A +LLR++V  G TPD  TY SLI+G+    ++
Sbjct: 291 -----TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRS 345

Query: 314 AES 316
            E+
Sbjct: 346 FEA 348



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD YTY   +SG+CK G  + A  +L+ M  +  V     Y++L+DG C  G 
Sbjct: 495 MLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFV-----YSSLVDGLCKSGK 549

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE       EM + G+  + +   L+ H L    ++ EA  +   + ++G+ P    YN 
Sbjct: 550 LEGGCMLFHEMERSGVANSQTRTRLIFH-LCKANRVDEAVSLFNAIRKEGM-PHPYAYNS 607

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   + G   +  +++ EM  +  +P  +TY +L+  +   NRM  A   +     +G
Sbjct: 608 IISALIKSGKVNEGQAVYQEMT-RWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRG 666

Query: 181 MLPDIVMFNALID 193
            +P + + + L D
Sbjct: 667 YVPPVSILHKLAD 679


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 44  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 103

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    ER +  A  +   + + G+ P  ++YN
Sbjct: 104 YFKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYN 163

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 164 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 223

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 224 GLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 283

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY ALI G CK  + D A E  + M+ + I  DD  
Sbjct: 284 HDLIDEMSMKGLKPD-------KITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 336

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 337 YTALISGLCQEGRSVDA 353



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 156/283 (55%), Gaps = 7/283 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKE  +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 119 GYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 178

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 179 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 238

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 239 HCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 298

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + + ALIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 299 KITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 358

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           +M   G+KPD         TY  +I   CK  +     +LL+E
Sbjct: 359 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKE 394



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/210 (36%), Positives = 127/210 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 185 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 244

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 245 VDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTA 304

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 305 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 364

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           + PD   +  +I+  C  G++ +   LLKE
Sbjct: 365 LKPDARTYTMIINEFCKKGDVWKGSKLLKE 394


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 165/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  DEV Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 174/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           +++RG Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 62  LETRGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 242 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQG 271
             L+D+M  +G+KPD I++                                + Y ALI G
Sbjct: 302 HHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISG 361

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ PD  TY  +I
Sbjct: 362 LCQEGRSVDAEKMLREMLSVGLKPDARTYTMII 394



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 145 FNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 197

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            L   M++ G+ PD  TY  LI G+    K
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 167/303 (55%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QPD + Y + ++G CK  R+++A+R+L++M+     P  VTYN +I   C++G L++A  
Sbjct: 151 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 210

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D+++     PT  TY +LI   ++E  + EA  +L EM  +G+ PD  TYN +I G C
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMC 270

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +AF +   +  KG +P +++Y  L+  L  Q +  E ++L     ++   P++V
Sbjct: 271 KEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 330

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LI   C +G IE A +LLK M    + PD  +Y+ L+   CR+G+++ A   L+ M
Sbjct: 331 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 390

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD ++       YN ++  LCKN + D A E+  ++   G +P+ ++Y ++   
Sbjct: 391 ISDGCLPDIVN-------YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 443

Query: 307 IAS 309
           + S
Sbjct: 444 LWS 446



 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 168/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG++PD +TY + + GMCKEG ++ A  M+  ++  G  P  ++YN L+    N+G 
Sbjct: 250 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGK 309

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       +M  +   P   TY++LI  L  + K+ EA ++LK M EKG+ PD+ +Y+ 
Sbjct: 310 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 369

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR G    A    + MI  G  P ++ Y +++  L K  +  +A ++F      G
Sbjct: 370 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 429

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +N +     ++G+  RA  ++ EM    + PDE+TYN+++   CR+G V++A 
Sbjct: 430 CSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAF 489

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M+          F+P+ +TYN ++ G CK    + A ++L  MV  G  P++ TY
Sbjct: 490 ELLVDMR-------SCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTY 542

Query: 301 FSLIEGIASVDKAAES 316
             LIEGI      AE+
Sbjct: 543 TVLIEGIGFAGYRAEA 558



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 144/288 (50%), Gaps = 8/288 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G   E+  +LE M   G  P  +    LI G+    N+  A    + + K G  P  
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDV 154

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
             YN LI+      ++ +A  +L  M  K   PD++TYNI+I   C  G    A  + D+
Sbjct: 155 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQ 214

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           ++    QPT++TYT LI     +  + EA +L +  L++G+ PD+  +N +I G C  G 
Sbjct: 215 LLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGM 274

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           ++RAF +++ ++     PD ++YN L+     QGK EE  +L+ +M      P+ +    
Sbjct: 275 VDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV---- 330

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
              TY+ LI  LC++ + + A  LL+ M  KG+TPD  +Y  LI    
Sbjct: 331 ---TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC 375



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 128/248 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S    P+  TY   ++ +C++G++EEA  +L+ MKE GL P A +Y+ LI  +C +G 
Sbjct: 320 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 379

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A  F + M+  G +P    YN ++  L    K  +A ++  ++GE G  P+S +YN 
Sbjct: 380 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 439

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           + +     G+  +A  +  EM+  GI P  +TY S+I  L ++  + +A +L  +  +  
Sbjct: 440 MFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCE 499

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N ++ G C    IE A  +L  M      P+E TY  L+ G    G   EA 
Sbjct: 500 FHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 559

Query: 241 RLLDQMKR 248
            L + + R
Sbjct: 560 ELANDLVR 567



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 109/214 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD+Y+Y   ++  C+EGRL+ A   LE M  +G +P  V YNT++   C  G 
Sbjct: 355 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 414

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     ++ + G  P +S+YN +   L      + A  M+ EM   GI PD ITYN 
Sbjct: 415 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNS 474

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  CR G   KAF L  +M      P+++TY  ++    K +R+ +A  + ++ +  G
Sbjct: 475 MISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNG 534

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
             P+   +  LI+G    G    A  L  ++ R+
Sbjct: 535 CRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 568



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           + H        +E+  +L+ M  KG  PD I    LI G+    N  KA  +  E++ K 
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVM-EILEKF 149

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            QP +  Y +LI    K NR+ +A ++ +   +K   PD V +N +I   C+ G ++ A 
Sbjct: 150 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLAL 209

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +L ++      P  +TY  L+     +G V+EA +LLD+M  RG+KPD         TY
Sbjct: 210 KVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPD-------MFTY 262

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           N +I+G+CK    D A E++R +  KG  PD  +Y  L+  + +  K  E
Sbjct: 263 NTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEE 312


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  QP+ +TY   +  +C++   ++A ++L  M E GL+P+ VTYN LIDGYC KG 
Sbjct: 335 MTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGL 394

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M      P A TYN LI      + + +A  +L +M E+ + P+ +TYNI
Sbjct: 395 SASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNI 454

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   A+ L   M   G+ P   TY+  I  L K+  + EA  LFE+   KG
Sbjct: 455 LIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKG 514

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V+++ LIDG+C  G +     LL +M      P+ +TYN+L+ G C++   +EAR
Sbjct: 515 IKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEAR 574

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D M +R I+       P   TY  LI  L K+ E D A ++  +M+S G  PD   Y
Sbjct: 575 LLVDIMIKRDIE-------PAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIY 627

Query: 301 FSLIEGIAS 309
            + I    S
Sbjct: 628 TAFIHAYCS 636



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 155/306 (50%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G   +  +Y + + G C+  R++EA ++  QM E+   PT  TY  +I   C  G 
Sbjct: 265 MPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGR 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM ++   P   TY +LI  L  +    +A  +L  M EKG++P  +TYN 
Sbjct: 325 KTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNA 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G +  A  +   M      P   TY  LI    +   + +A  L    L + 
Sbjct: 385 LIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERK 444

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N LI G C  G++  A+ LL  M+   + PDE TY+  +   C++G VEEAR
Sbjct: 445 LQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEAR 504

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L + +K +GIK + +        Y+ LI G CK  +      LL +M+S G  P+  TY
Sbjct: 505 SLFESLKEKGIKANEV-------IYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITY 557

Query: 301 FSLIEG 306
            SLI+G
Sbjct: 558 NSLIDG 563



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 163/345 (47%), Gaps = 42/345 (12%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+ +T  + V+G CK G + EA   + ++ + GL     TY +LI GYC   N++ A 
Sbjct: 200 VTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAAN 259

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +    M  +G +    +Y  LIH     R++ EA  +  +M E    P   TY ++I   
Sbjct: 260 AIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFAL 319

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G   +A ++  EM  K  QP + TYT LI  L + +   +A ++    L KG++P +
Sbjct: 320 CQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSV 379

Query: 186 VMFNALIDGHCTNG-----------------------------------NIERAFSLLKE 210
           V +NALIDG+C  G                                   NI +A SLL +
Sbjct: 380 VTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHK 439

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M   K+ P+ VTYN L+HG+C++G +  A +LL  M   G+ PD         TY+  I 
Sbjct: 440 MLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPD-------EWTYSVFID 492

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            LCK    + A  L   +  KGI  ++  Y +LI+G   V K ++
Sbjct: 493 TLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSD 537



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 162/339 (47%), Gaps = 36/339 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R +QP+  TY   + G CKEG L  A ++L  M E+GLVP   TY+  ID  C +G 
Sbjct: 440 MLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGL 499

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A S  + + ++GI      Y+ LI       K+ +   +L +M   G VP+SITYN 
Sbjct: 500 VEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNS 559

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+  N K+A  L D MI + I+P   TYT LI  L K +   +A  +F+  L+ G
Sbjct: 560 LIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTG 619

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ ++ A I  +C++G ++ A  L+ +M+   + PD + Y   +    R G ++ A 
Sbjct: 620 SHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAF 679

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGL---------------------------- 272
            +L +M   G +P +        TY+ LI+ L                            
Sbjct: 680 GILKRMHEVGCEPSY-------YTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSN 732

Query: 273 -CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
             +  + +   +L  +M   G  P+ NTY   I G+  V
Sbjct: 733 CWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKV 771



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 149/326 (45%), Gaps = 22/326 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD +TY  F+  +CK G +EEA  + E +KE G+    V Y+TLIDGYC  G 
Sbjct: 475 MNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGK 534

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +       D+M+  G +P + TYN LI     E+   EA  ++  M ++ I P + TY I
Sbjct: 535 VSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTI 594

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   +     +A  + D+M+  G  P +  YT+ I       R+ +A+ L     AKG
Sbjct: 595 LIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKG 654

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD +++   ID +   G+I+ AF +LK M  +   P   TY+ L+         E + 
Sbjct: 655 IMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSS 714

Query: 241 RLLDQMKRRGIKPDHIS----------------------FNPTRLTYNALIQGLCKNQEG 278
                    G+  +  S                        P   TY   I GLCK    
Sbjct: 715 SSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCL 774

Query: 279 DLAEELLREMVSKGITPDDNTYFSLI 304
           ++A  L   M  KG +P+++ Y SL+
Sbjct: 775 EVAHRLFDHMKEKGQSPNEDIYNSLL 800



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 146/309 (47%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S    P++ TY   + G C+   + +A  +L +M E  L P  VTYN LI G C +G+
Sbjct: 405 MESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGD 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+     M + G++P   TY++ I  L     + EA  + + + EKGI  + + Y+ 
Sbjct: 465 LGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYST 524

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G       L D+M+  G  P  +TY SLI    K+    EA  L +  + + 
Sbjct: 525 LIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRD 584

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    +  LID    +   ++A  +  +M     HPD   Y   +H  C  G++++A 
Sbjct: 585 IEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAE 644

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M  +GI PD        + Y   I    +    D A  +L+ M   G  P   TY
Sbjct: 645 VLICKMNAKGIMPD-------TMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTY 697

Query: 301 FSLIEGIAS 309
             LI+ +++
Sbjct: 698 SCLIKHLSN 706



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 156/402 (38%), Gaps = 92/402 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K +G++ +   Y + + G CK G++ +   +L++M   G VP ++TYN+LIDGYC + N
Sbjct: 510 LKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKN 569

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
            + A    D M+K+ I P A TY +LI  LL + +  +A DM  +M              
Sbjct: 570 FKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTA 629

Query: 107 ---------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                  KGI+PD++ Y + I+ Y R G+   AF +   M   G
Sbjct: 630 FIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVG 689

Query: 146 IQPTMLTYTSLIFVLSKQN--------------------------RMIEAD---QLFENF 176
            +P+  TY+ LI  LS                             R ++ +    LF   
Sbjct: 690 CEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKM 749

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
              G  P+   +   I G C  G +E A  L   M      P+E  YN+L+   C+ G  
Sbjct: 750 AEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLY 809

Query: 237 EEARRLLDQM----------------------------KRRGIKPDHISFNPTRLTYNAL 268
            EA R LD M                            KR         +N   + +  L
Sbjct: 810 GEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVL 869

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           I GL K    D   +L   M ++G      TY  LIEG   +
Sbjct: 870 IDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGFDGI 911



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 13/231 (5%)

Query: 79  TASTYNLLIHELLMERKMV--EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           T   YN+L+  +L+ R ++  E   +  EM +  + P+  T N ++NGYC+ GN  +A  
Sbjct: 168 TLRCYNMLL--MLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAEL 225

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
              +++  G+     TYTSLI    +   +  A+ +F +   KG L + V +  LI G C
Sbjct: 226 YVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFC 285

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-H 255
               ++ A  L  +M      P   TY  ++   C+ G+  EA  +  +M  +  +P+ H
Sbjct: 286 EARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVH 345

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                   TY  LI  LC++   D A+++L  M+ KG+ P   TY +LI+G
Sbjct: 346 --------TYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDG 388



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 131/308 (42%), Gaps = 36/308 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD + Y +F+   C  GRL++A  ++ +M   G++P  + Y   ID Y   G+
Sbjct: 615 MLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGS 674

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER-------------------------- 94
           ++ AF     M + G  P+  TY+ LI  L   +                          
Sbjct: 675 IDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCW 734

Query: 95  KMVEAD---DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
           + V+ +   D+  +M E G  P++ TY   I G C+ G  + A  L D M  KG  P   
Sbjct: 735 RRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNED 794

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            Y SL+    +     EA +  +  +    LP +     L+ G    GN E+A  +    
Sbjct: 795 IYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSF 854

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            + + + DE+ +  L+ G  ++G  ++   L   M+ +G +      +P   TY+ LI+G
Sbjct: 855 LQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQ-----IHPK--TYSMLIEG 907

Query: 272 LCKNQEGD 279
               QE D
Sbjct: 908 FDGIQEID 915



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T+  Y  L+ +LS+   + E   ++   L   + P+I   N +++G+C  GN+  A   +
Sbjct: 168 TLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYV 227

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            ++ +  +  D  TY +L+ G CR   V+ A  +   M  +G   + +S       Y  L
Sbjct: 228 SKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVS-------YTNL 280

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           I G C+ +  D A +L  +M      P   TY  +I  +  + +  E+ N
Sbjct: 281 IHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALN 330


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 164/291 (56%), Gaps = 7/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G Q D   + + ++G+C+EGR+ EA  ++++M ENG  P  VTY T+++G C  G+
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   +M +  I      Y  +I  L  +    +A ++  EM +KGI P+ +TYN 
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C  G    A  L  +MI   + P ++T+ +LI    K+ ++ EA++L+   L + 
Sbjct: 121 MIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRN 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N+LIDG C +  ++ A  +   M      P+ +T NTL+ G CR  +V++  
Sbjct: 181 IFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGI 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           +LL +M RRG+ PD +S       YN LI G C+  + + A++L +EM+S+
Sbjct: 241 KLLHEMLRRGLVPDSVS-------YNTLIHGFCQAGDLNAAQDLFQEMISQ 284



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 143/273 (52%), Gaps = 7/273 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           M E G     V +NTL++G C +G +  A +  D MV+ G  P   TY  +++ +     
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
              A ++L++M E  I  D + Y  +I+  C+ G+  KA +L  EM  KGI P +LTY  
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           +I       +  +A+QL  + +   + PD+V FNALI+     G I  A  L +EM    
Sbjct: 121 MIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRN 180

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           + PD +TYN+L+ G C+  ++++A+ + D M  +G  P+ I       T N LI G C+ 
Sbjct: 181 IFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVI-------TINTLIGGCCRA 233

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +  D   +LL EM+ +G+ PD  +Y +LI G  
Sbjct: 234 KRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFC 266



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 7/176 (3%)

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+ KG Q  ++ + +L+  L ++ R++EA+ L +  +  G  P+ V +  +++G C  G+
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            + A +LL++MD   +  D V Y  ++   C+ G   +A+ L  +M  +GI P+      
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPN------ 114

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             LTYN +I G C   +   AE+LLR+M+   + PD  T+ +LI       K +E+
Sbjct: 115 -VLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEA 169



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 7/100 (7%)

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           D V +NTLM+G CR+G+V EA  L+D+M   G +P+ +       TY  ++ G+CK  + 
Sbjct: 9   DVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEV-------TYGTIVNGMCKMGDT 61

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           D A  LLR+M    I  D   Y ++I+ +      +++ N
Sbjct: 62  DSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQN 101


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 159/310 (51%), Gaps = 42/310 (13%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +G+ P+  T+   ++G+C EG L++A  +L+QM+ENG VPT VTYNTL++ YC KG 
Sbjct: 975  MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 1034

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             + A    D M+ +GI     TYN+ I  L    +  +A  +LK+M ++ I P+ +TYN 
Sbjct: 1035 YKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNT 1094

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LING+ + G    A  + +EM    + P  +TY                           
Sbjct: 1095 LINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTY--------------------------- 1127

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                    NALI GHC  G+ E A  LL  M+   +  +EVTY TL++G C+  K E A+
Sbjct: 1128 --------NALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAK 1179

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            RLL++M+   +   HI+       Y  LI GLCKN   D A +L+  M   G+ PD  TY
Sbjct: 1180 RLLERMRVNDMVVGHIA-------YTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITY 1232

Query: 301  FSLIEGIASV 310
             SLI G   V
Sbjct: 1233 SSLINGFCRV 1242



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 160/309 (51%), Gaps = 8/309 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G   D +T    VS +C++G+L EA + L  M   GLVP ++TY+ +I+GY + G+
Sbjct: 1290 MNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGD 1349

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               AFSF D+M+K G  P+  TY  L+  L     +VEA   L  +       DS+ YN 
Sbjct: 1350 PLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNT 1409

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+   C+ GN  +A +L D+M+   + P   TY+SL+  L ++ + + A  LF   + +G
Sbjct: 1410 LLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRG 1469

Query: 181  ML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             L P+ VM+  L+DG    G+ + AF   +EM +    PD V +N ++    R+G++ +A
Sbjct: 1470 TLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKA 1529

Query: 240  RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
                  M+  G+ P+         TYN L+ G  K Q       L   M+ +GI PD  T
Sbjct: 1530 NDFFSTMRWWGVCPN-------LATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLT 1582

Query: 300  YFSLIEGIA 308
            + SLI G++
Sbjct: 1583 FHSLILGLS 1591



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M++ G++ +  TYG+ ++G+CK  + E A R+LE+M+ N +V   + Y  LIDG C  G 
Sbjct: 1150 MEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGM 1209

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L+ A      M K G+ P   TY+ LI+       +  A +++  M   G+V + I Y+ 
Sbjct: 1210 LDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYST 1269

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI  +C+ GN  +A  ++  M   G      T   L+  L +  ++ EA++   +    G
Sbjct: 1270 LIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIG 1329

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            ++P+ + ++ +I+G+ + G+   AFS   +M +   HP   TY +L+ G C+ G + EA+
Sbjct: 1330 LVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAK 1389

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + L+++        +I      + YN L+   CK+     A  L  +MV   + PD  TY
Sbjct: 1390 KFLNRLH-------YIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTY 1442

Query: 301  FSLIEGIASVDKAAES 316
             SL+ G+    KA  +
Sbjct: 1443 SSLLTGLCRKGKAVTA 1458



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 8/317 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRML-EQMKENGLVPTAVTYNTLIDGYCNKG 59
            M    V PDSYTY S ++G+C++G+   A  +    M    L P  V Y  L+DG    G
Sbjct: 1430 MVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAG 1489

Query: 60   NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            + + AF F +EM+K+G  P    +N +I       +M++A+D    M   G+ P+  TYN
Sbjct: 1490 HPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYN 1549

Query: 120  ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            IL++G+ +     +  SL+  M+ +GI P  LT+ SLI  LSK        +L    + +
Sbjct: 1550 ILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIME 1609

Query: 180  GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            G L D   FN LI+ +  +G + +AF L+  M+ + V PD  TYN + +G  ++    E+
Sbjct: 1610 GTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRES 1669

Query: 240  RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
              +L +M   G+ P H         Y  LI G+C+  +   A +L  EM + G    +  
Sbjct: 1670 TVVLHEMLENGVIPKHAQ-------YITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVA 1722

Query: 300  YFSLIEGIASVDKAAES 316
              +++ G+    K  ++
Sbjct: 1723 ESAMVRGLLHCGKTEDA 1739



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 149/266 (56%), Gaps = 7/266 (2%)

Query: 47   TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
             ++ LI  Y  +G ++ A    + +   G  P+  T N+++  ++ +++      + +EM
Sbjct: 916  VFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREM 975

Query: 107  GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
             +KGI P+  T+NILING C  GN KKA +L  +M   G  PT++TY +L+    K+ R 
Sbjct: 976  SDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRY 1035

Query: 167  IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
              A +L +  + KG+  D+  +N  ID  CTN    +A+ LLK+M +  + P+EVTYNTL
Sbjct: 1036 KAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTL 1095

Query: 227  MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
            ++G  ++GK+  A ++ ++M +  + P+ +       TYNALI G C   + + A  LL 
Sbjct: 1096 INGFVKEGKIGVAAQVFNEMSKFDLSPNCV-------TYNALIGGHCHVGDFEEALRLLD 1148

Query: 287  EMVSKGITPDDNTYFSLIEGIASVDK 312
             M + G+  ++ TY +L+ G+   +K
Sbjct: 1149 HMEAAGLRLNEVTYGTLLNGLCKHEK 1174



 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 42/346 (12%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +G  PD+  + + +    + G++ +A+     M+  G+ P   TYN L+ G+  K  
Sbjct: 1501 MMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQA 1560

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L    S    M+++GI P   T++ LI  L           +L +M  +G + D  T+NI
Sbjct: 1561 LLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNI 1620

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LIN Y   G  +KAF L + M   G+ P   TY  +   L+K++   E+  +    L  G
Sbjct: 1621 LINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENG 1680

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD---------------------------- 212
            ++P    +  LI+G C  G+I+ AF L  EM+                            
Sbjct: 1681 VIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAM 1740

Query: 213  -------RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                   RM++ P   T+ TLMH  CR  K+ EA +L   M+  G+K D ++       Y
Sbjct: 1741 LVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVA-------Y 1793

Query: 266  NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            N LI G+C N +   A EL  EM  + + P+  TY  L++ I++ +
Sbjct: 1794 NVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAAN 1839



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 134/293 (45%), Gaps = 7/293 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G+ PD  T+ S + G+ K G  +   ++L +M   G +    T+N LI+ Y   G 
Sbjct: 1571 MMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGK 1630

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  AF   + M   G+ P   TYN + + L  +    E+  +L EM E G++P    Y  
Sbjct: 1631 MRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYIT 1690

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LING CR G+ + AF L DEM   G     +  ++++  L    +  +A  + ++ L   
Sbjct: 1691 LINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMR 1750

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +LP I  F  L+   C +  I  A  L   M+   +  D V YN L+ G C  G    A 
Sbjct: 1751 LLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAF 1810

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             L ++M+ R + P     N T  TY  L+  +         E+LL ++  +G+
Sbjct: 1811 ELYEEMRHRDLCP-----NIT--TYAVLVDAISAANNLIQGEKLLTDLQERGL 1856



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 35/217 (16%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M + GV PD  TY    +G+ K+    E++ +L +M ENG++P    Y TLI+G C  G+
Sbjct: 1641 MNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGD 1700

Query: 61   LEMAFSFRDEMVKQG-----------------------------------IMPTASTYNL 85
            ++ AF  +DEM   G                                   ++PT +T+  
Sbjct: 1701 IQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTT 1760

Query: 86   LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
            L+H    + K+ EA  +   M   G+  D + YN+LI G C  G++  AF L++EM H+ 
Sbjct: 1761 LMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD 1820

Query: 146  IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            + P + TY  L+  +S  N +I+ ++L  +   +G++
Sbjct: 1821 LCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLI 1857



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 38/90 (42%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+  G++ D   Y   + GMC  G    A  + E+M+   L P   TY  L+D      N
Sbjct: 1781 MELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANN 1840

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
            L        ++ ++G++    +   L  EL
Sbjct: 1841 LIQGEKLLTDLQERGLISWGGSTQHLDKEL 1870


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + +++ + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   GI P   TY++LI+ L  E KM +A+++  EM   G+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+   A   + EM+ +G  P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G CR+G+   A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD+        TY  +I   CK  +  +  +LL+EM   G  P
Sbjct: 371 EMLSVGLKPDNG-------TYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 176/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++ +    
Sbjct: 56  LEAKGAQRSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +  + F  E+++ G   +   +N+L+H    E +M  A  +  E+ + G+ P  +++N
Sbjct: 116 YFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   GIQP + TY+ LI  L K+++M +A++LF+  +  
Sbjct: 176 TLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC  G+I+ A    KEM R    PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
           + L+D+M  +G+KPD I++                            RL    Y ALI G
Sbjct: 296 QDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+  +   AE++LREM+S G+ PD+ TY  +I
Sbjct: 356 LCREGQSVGAEKMLREMLSVGLKPDNGTYTMII 388



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 132/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QPD YTY   ++G+CKE ++ +A+ + ++M  NGLVP  VT+ TLIDG+C  G+
Sbjct: 197 MHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGS 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     EM++QG  P   TYN LI+ L  E  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 IDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ + + A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C  G+++    LLKEM R    P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418


>gi|255661000|gb|ACU25669.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 376

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 161/295 (54%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK      DS TYG  V G CK G + ++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSDFVEDSITYGILVHGFCKNGXINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  ++M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG+ P+++TY+ L+  L   +++  A QL+   ++KG
Sbjct: 205 LINGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G  +RA SL   M+R K  P+ VT+NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQRALSLYFXMNRWKCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD IS+N T       ++GLC       A   L + V K I P
Sbjct: 325 VIWARVLRNGLEPDIISYNIT-------LKGLCSCNRICDAILFLHDSVRKKIVP 372



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 157/296 (53%), Gaps = 8/296 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YNT+++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M +   V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  + +A  +  + +  G  P+  ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  +   P  +TYNTL++G C+     EA  L+ +M  +G+       NP
Sbjct: 180 FEDAIRVFREMGTVHCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + +TY+ L++GLC + + + A +L  +++SKG  PD   +  LI G+ SV K   +
Sbjct: 233 SVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQRA 288



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 116/222 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G+ P+  TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  ++A SL+  M      P ++T+ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKTQRALSLYFXMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +  R K+ P ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRICDAILFLHDSVRKKIVPTKIT 376


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G   D  TYG+ ++G+CK G   EA  +L +M+   + P  V YN ++DG C  G + 
Sbjct: 176 AQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVT 235

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     ++V +GI P   TY  LIH      +  E   +L +M ++ +  +  TYNILI
Sbjct: 236 EARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILI 295

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G   KA  + + MI +G +P ++T+ +L+      N ++EA +LF+ F   G+ 
Sbjct: 296 DALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGIT 355

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +N LI G+C N  I+ A SL  +M+  K+ P+ VTY++L+ G C+ G++  A  L
Sbjct: 356 PDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWEL 415

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              +   G  P+ I       TYN ++  LCK Q  D A EL   M  +G+TP+ ++Y  
Sbjct: 416 FSAIHDGGPSPNVI-------TYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNI 468

Query: 303 LIEGIASVDKAAESSN 318
           LI G     +  E+ N
Sbjct: 469 LINGYCKSKRIDEAMN 484



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 159/307 (51%), Gaps = 7/307 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+ PD +TY   + G C  G+  E +R+L  M +  +     TYN LID  C KG L  
Sbjct: 247 RGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGK 306

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A   R+ M+++G  P   T+N L+    +   +VEA  +     E GI PD  +YNILI 
Sbjct: 307 AHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILII 366

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+     +A SL ++M +K + P ++TY+SLI  L K  R+  A +LF      G  P
Sbjct: 367 GYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSP 426

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +++ +N ++D  C    +++A  L   M    + P+  +YN L++G C+  +++EA  L 
Sbjct: 427 NVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLF 486

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M RR + PD +       TYN LI GLCK+     A EL   M   G   D  TY  L
Sbjct: 487 EEMHRRNLVPDSV-------TYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNIL 539

Query: 304 IEGIASV 310
            +  + +
Sbjct: 540 FDAFSKI 546



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 158/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + V+P+   Y   V G+CK+G + EA  +   +   G+ P   TY  LI G+C  G 
Sbjct: 209 MEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQ 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                    +MV + +     TYN+LI  L  +  + +A DM   M E+G  PD +T+N 
Sbjct: 269 WREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNT 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC   +  +A  L D     GI P + +Y  LI    K NR+ EA  LF     K 
Sbjct: 329 LMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK 388

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +++LIDG C +G I  A+ L   +      P+ +TYN ++   C+   V++A 
Sbjct: 389 LAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAI 448

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L + M  RG+ P+  S       YN LI G CK++  D A  L  EM  + + PD  TY
Sbjct: 449 ELFNLMFERGLTPNVSS-------YNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTY 501

Query: 301 FSLIEGIASVDKAAES 316
             LI+G+    + + +
Sbjct: 502 NCLIDGLCKSGRISHA 517



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 136/259 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V  + YTY   +  +CK+G L +A  M   M E G  P  VT+NTL+ GYC   +
Sbjct: 279 MVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYND 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D   + GI P   +YN+LI       ++ EA  +  +M  K + P+ +TY+ 
Sbjct: 339 VVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSS 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A+ L   +   G  P ++TY  ++  L K   + +A +LF     +G
Sbjct: 399 LIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERG 458

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +N LI+G+C +  I+ A +L +EM R  + PD VTYN L+ G C+ G++  A 
Sbjct: 459 LTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAW 518

Query: 241 RLLDQMKRRGIKPDHISFN 259
            L + M   G   D I++N
Sbjct: 519 ELFNVMHDGGPPVDVITYN 537



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 150/308 (48%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P   T    ++  C  G +  A  +L  + + G    A+T  T++ G C  G 
Sbjct: 104 MGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGE 163

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D +V QG +    TY  LI+ L       EA ++L +M  + + P+ + YN+
Sbjct: 164 VRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNM 223

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C+ G   +A  L+ +++ +GI P + TYT LI       +  E  +L  + + + 
Sbjct: 224 IVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRN 283

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  ++  +N LID  C  G + +A  +   M      PD VT+NTLM G C    V EAR
Sbjct: 284 VNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEAR 343

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D     GI PD  S       YN LI G CKN   D A  L  +M  K + P+  TY
Sbjct: 344 KLFDTFAECGITPDVWS-------YNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTY 396

Query: 301 FSLIEGIA 308
            SLI+G+ 
Sbjct: 397 SSLIDGLC 404



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 115/227 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +PD  T+ + +SG C    + EA ++ +   E G+ P   +YN LI GYC    
Sbjct: 314 MIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNR 373

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  ++M  + + P   TY+ LI  L    ++  A ++   + + G  P+ ITYNI
Sbjct: 374 IDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNI 433

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C+     KA  L + M  +G+ P + +Y  LI    K  R+ EA  LFE    + 
Sbjct: 434 MLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRN 493

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           ++PD V +N LIDG C +G I  A+ L   M       D +TYN L 
Sbjct: 494 LVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILF 540



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 7/245 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A +    ++    +P+   +N+++  ++  +    A  + K+MG +GI P  +T +ILIN
Sbjct: 62  AVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILIN 121

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            YC  G+   AFS+   ++ +G Q   +T T+++  L     + +A +  ++ +A+G L 
Sbjct: 122 CYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLL 181

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +  LI+G C  G    AF LL +M+   V P+ V YN ++ G C+ G V EAR L 
Sbjct: 182 DEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLY 241

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +  RGI PD         TY  LI G C   +      LL +MV + +  +  TY  L
Sbjct: 242 SDVVGRGIDPD-------VFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNIL 294

Query: 304 IEGIA 308
           I+ + 
Sbjct: 295 IDALC 299



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 2/168 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  TY S + G+CK GR+  A  +   + + G  P  +TYN ++D  C    
Sbjct: 384 MNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQL 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M ++G+ P  S+YN+LI+     +++ EA ++ +EM  + +VPDS+TYN 
Sbjct: 444 VDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNC 503

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPT-MLTYTSLIFVLSKQNRMI 167
           LI+G C+ G    A+ L + M H G  P  ++TY  L    SK   +I
Sbjct: 504 LIDGLCKSGRISHAWELFNVM-HDGGPPVDVITYNILFDAFSKIQHVI 550



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           +A  LF   +    LP +V FN ++       +   A SL K+M    + P  VT + L+
Sbjct: 61  DAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILI 120

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           +  C  G +  A  +L  + +RG + + I       T   +++GLC N E   A E    
Sbjct: 121 NCYCHLGHMGFAFSVLGMVLKRGYQLNAI-------TLTTIMKGLCINGEVRKALEFHDS 173

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +V++G   D+ TY +LI G+  +    E+
Sbjct: 174 VVAQGFLLDEVTYGTLINGLCKIGLTREA 202


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 173/330 (52%), Gaps = 42/330 (12%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V  + YTY   ++G  K G  ++   + E+MK  G+VP   TYN++I   CN G L  AF
Sbjct: 230 VVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAF 289

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM ++G+     TYN LI  L  ER+++EA+ ++  M   G+ P+ I+YN LI+GY
Sbjct: 290 ELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGY 349

Query: 126 CRCGNAKKAFSLHD-----------------------------------EMIHKGIQPTM 150
           C  GN  KA SL +                                   EM  +G+ P+ 
Sbjct: 350 CSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSK 409

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           +TYT L+  L + + + +A Q++ +    G++ DI ++  LI G C  G+++ A  L K 
Sbjct: 410 VTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKS 469

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           +D M + P++V YNT+++G C++G    A RLL +M   G+ P+  S+N T       IQ
Sbjct: 470 LDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNST-------IQ 522

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LCK+++   AE LL++M+  G+ P  + +
Sbjct: 523 ILCKDEKWTEAEVLLKDMIELGLKPSISIW 552



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 145/259 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RGV  +  TY + + G+C+E R+ EA R++ +MK +GL P  ++YNTLIDGYC+ GN
Sbjct: 295 MRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  ++M   G  P+ +TYN+LI      +      DM++EM  +G+ P  +TY I
Sbjct: 355 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTI 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++   R  N +KAF ++  M   G+   +  Y  LI  L     M EA +LF++     
Sbjct: 415 LMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMH 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++N +I G+C  G+  RA  LLKEM    + P+  +YN+ +   C+  K  EA 
Sbjct: 475 LKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAE 534

Query: 241 RLLDQMKRRGIKPDHISFN 259
            LL  M   G+KP    +N
Sbjct: 535 VLLKDMIELGLKPSISIWN 553



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 164/315 (52%), Gaps = 13/315 (4%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+ D Y++G  + G C+ G L++   +L QM+E GL P  V Y TLIDG C  G++E   
Sbjct: 160 VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGK 219

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +M +  ++    TY +LI+         +  ++ ++M   GIVP+  TYN +I   
Sbjct: 220 QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI--- 276

Query: 126 CRCGNAKK---AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           CRC N  K   AF L DEM  +G+   ++TY +LI  L ++ R++EA++L       G+ 
Sbjct: 277 CRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS 336

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+++ +N LIDG+C+ GN+++A SL  +M      P   TYN L+ G            +
Sbjct: 337 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 396

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           + +M+ RG+       +P+++TY  L+  L ++   + A ++   M   G+  D   Y  
Sbjct: 397 VREMEARGL-------SPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGV 449

Query: 303 LIEGIASVDKAAESS 317
           LI G+  V    E+S
Sbjct: 450 LIHGLCVVGDMKEAS 464



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 142/319 (44%), Gaps = 41/319 (12%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTL----------------------------------I 52
           E+A     QM   GLVP + T+N L                                  I
Sbjct: 112 EQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMI 171

Query: 53  DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
            G C  G L+  F    +M + G+ P    Y  LI        +     +  +MGE  +V
Sbjct: 172 KGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVV 231

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
            +  TY +LING+ + G  K    L+++M   GI P + TY S+I       ++  A +L
Sbjct: 232 ANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFEL 291

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           F+    +G+  ++V +N LI G C    +  A  L+  M R  + P+ ++YNTL+ G C 
Sbjct: 292 FDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCS 351

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            G +++A  L +QMK  G        +P+  TYN LI G  + +      +++REM ++G
Sbjct: 352 IGNLDKASSLFNQMKSSGQ-------SPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 293 ITPDDNTYFSLIEGIASVD 311
           ++P   TY  L++ +   D
Sbjct: 405 LSPSKVTYTILMDALVRSD 423



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 138/281 (49%), Gaps = 14/281 (4%)

Query: 43  PTAV-TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           PT V  +  +I+ +      E A  + ++M+ +G++P ++T+N L+  L+      +A  
Sbjct: 92  PTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWR 151

Query: 102 MLKEMGEKGIVP-DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
           +  E   KG V  D  ++ I+I G C  G   K F +  +M   G+ P ++ YT+LI   
Sbjct: 152 VFNE--TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 209

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            K   +    QLF       ++ +   +  LI+G    G  +    L ++M    + P+ 
Sbjct: 210 CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNV 269

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TYN+++   C  GK+  A  L D+M+ RG+  + +       TYN LI GLC+ +    
Sbjct: 270 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVV-------TYNTLIGGLCQERRVLE 322

Query: 281 AEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSN 318
           AE L+  M   G++P+  +Y +LI+G   I ++DKA+   N
Sbjct: 323 AERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFN 363


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 173/316 (54%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + PD   + + V  +CKEG++ EA  +++ M   G+ P  VTYN L+DG+C +  
Sbjct: 268 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D MV  G  P   +YN LI+     ++M +A  + +EM +K ++P+++TYN 
Sbjct: 328 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  + A +L  EM+  G  P + TY  L+  L K++ + EA  L +      
Sbjct: 388 LMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN 447

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PDI ++  +IDG C  G +E A  +   +    + P+  TY  +++G CR+G ++EA 
Sbjct: 448 MDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEAN 507

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G  PD         TYN + QGL +N+E   A +LL+EM+++G + D +T 
Sbjct: 508 KLFMEMDGNGCSPDGC-------TYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTT 560

Query: 301 FSLIEGIASVDKAAES 316
             L+E +   DK  +S
Sbjct: 561 TLLVEMLCD-DKLDQS 575



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 167/310 (53%), Gaps = 11/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK G    A R+L  M++    P  V Y ++ID  C    
Sbjct: 163 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 222

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   +MV QGI P   TY  LIH L  L E K V    +L +M    I+PD + +
Sbjct: 223 VTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT--LLNQMINSKIMPDVVIF 280

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + +++  C+ G   +A  + D MI +G++P ++TY +L+     Q+ M EA ++F+  + 
Sbjct: 281 STVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVH 340

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G  P+++ +N LI+G+C    +++A  L +EM + ++ P+ VTYNTLMHG C  G++++
Sbjct: 341 NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQD 400

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L  +M   G  PD         TY  L+  LCK    D A  LL+ +    + PD  
Sbjct: 401 AIALFHEMVAHGQIPD-------LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQ 453

Query: 299 TYFSLIEGIA 308
            Y  +I+G+ 
Sbjct: 454 IYTIVIDGMC 463



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 161/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD +TY S +  +C     +  + +L QM  + ++P  V ++T++D  C +G 
Sbjct: 233 MVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGK 292

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M+ +G+ P   TYN L+    ++ +M EA  +   M   G  P+ I+YN 
Sbjct: 293 ITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNT 352

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L +EM  K + P  +TY +L+  L    R+ +A  LF   +A G
Sbjct: 353 LINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHG 412

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+  +  L+D  C   +++ A +LLK ++   + PD   Y  ++ G CR G++E AR
Sbjct: 413 QIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 472

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   +  +G++P+         TY  +I GLC+    D A +L  EM   G +PD  TY
Sbjct: 473 DIFSNLSSKGLRPN-------VRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTY 525

Query: 301 FSLIEGI 307
            ++ +G+
Sbjct: 526 NTITQGL 532



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 163/301 (54%), Gaps = 7/301 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+QPD+ T+ + + G+C EG++ +A  + ++M   G  P  VTY TLI+G C  GN   A
Sbjct: 132 GLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 191

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M +    P    Y  +I  L  +R++ EA ++  +M  +GI PD  TY  LI+ 
Sbjct: 192 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHS 251

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     K   +L ++MI+  I P ++ +++++  L K+ ++ EA  + +  + +G+ P+
Sbjct: 252 LCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPN 311

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +NAL+DGHC    ++ A  +   M      P+ ++YNTL++G C+  ++++A  L +
Sbjct: 312 VVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFE 371

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M ++ + P+ +       TYN L+ GLC       A  L  EMV+ G  PD  TY  L+
Sbjct: 372 EMCQKELIPNTV-------TYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILL 424

Query: 305 E 305
           +
Sbjct: 425 D 425



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 155/316 (49%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++  C   R   A  +L ++ + GL P   T+ TLI G C +G 
Sbjct: 93  MDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGK 152

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+ +G  P   TY  LI+ L        A  +L+ M +    PD + Y  
Sbjct: 153 IGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTS 212

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF+L  +M+ +GI P + TYTSLI  L           L    +   
Sbjct: 213 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 272

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V+F+ ++D  C  G I  A  ++  M    V P+ VTYN LM G C Q +++EA 
Sbjct: 273 IMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAV 332

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M   G  P+ IS       YN LI G CK Q  D A  L  EM  K + P+  TY
Sbjct: 333 KVFDTMVHNGYAPNVIS-------YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTY 385

Query: 301 FSLIEGIASVDKAAES 316
            +L+ G+  V +  ++
Sbjct: 386 NTLMHGLCHVGRLQDA 401



 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 149/289 (51%), Gaps = 7/289 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV+P+  TY + + G C +  ++EA ++ + M  NG  P  ++YNTLI+GYC    
Sbjct: 303 MIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQR 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM ++ ++P   TYN L+H L    ++ +A  +  EM   G +PD  TY I
Sbjct: 363 MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRI 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+  +  +A +L   +    + P +  YT +I  + +   +  A  +F N  +KG
Sbjct: 423 LLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKG 482

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +  +I+G C  G ++ A  L  EMD     PD  TYNT+  G  +  +   A 
Sbjct: 483 LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAI 542

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
           +LL +M  RG   D +S      T   L++ LC ++     +++L E V
Sbjct: 543 QLLQEMLARGFSAD-VS------TTTLLVEMLCDDKLDQSVKQILSEFV 584



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 134/275 (48%), Gaps = 7/275 (2%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           +++++N       N   L+ A S  + M+     P+   +N L+  +   ++      + 
Sbjct: 31  SSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLS 90

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            +M   GI PD  T NILIN +C       AFS+  +++  G+QP   T+T+LI  L  +
Sbjct: 91  NQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVE 150

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            ++ +A  LF+  + +G  P++V +  LI+G C  GN   A  LL+ M++    PD V Y
Sbjct: 151 GKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVY 210

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
            +++   C+  +V EA  L  +M  +GI PD         TY +LI  LC   E      
Sbjct: 211 TSIIDSLCKDRQVTEAFNLFSKMVGQGISPD-------IFTYTSLIHSLCNLCEWKHVTT 263

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LL +M++  I PD   + ++++ +    K  E+ +
Sbjct: 264 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHD 298


>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g26680, mitochondrial; Flags: Precursor
 gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
 gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
 gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 521

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 158/291 (54%), Gaps = 7/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P+ YT    +SG C+ G+L++   +L+ M+  G   T V+YNTLI G+C KG 
Sbjct: 229 MRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGL 288

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A   ++ M K G+ P   T+N LIH      K+ EA  +  EM    + P+++TYN 
Sbjct: 289 LSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNT 348

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY + G+ + AF  +++M+  GIQ  +LTY +LIF L KQ +  +A Q  +    + 
Sbjct: 349 LINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKEN 408

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   F+ALI G C   N +R F L K M R   HP+E T+N L+   CR    + A 
Sbjct: 409 LVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGAS 468

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           ++L +M RR I  D         T + +  GL    +  L ++LL+EM  K
Sbjct: 469 QVLREMVRRSIPLDS-------RTVHQVCNGLKHQGKDQLVKKLLQEMEGK 512



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 147/311 (47%), Gaps = 28/311 (9%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +   A+    QMK+ G +PT  + N  +     +G +++A  F  EM +  I P   T N
Sbjct: 183 KFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLN 242

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +++       K+ +  ++L++M   G     ++YN LI G+C  G    A  L + M   
Sbjct: 243 MVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKS 302

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+QP ++T+ +LI    +  ++ EA ++F    A  + P+ V +N LI+G+   G+ E A
Sbjct: 303 GLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMA 362

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
           F   ++M    +  D +TYN L+ G C+Q K  +A + + ++ +  + P+  +F      
Sbjct: 363 FRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMG 422

Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                 +P   T+N L+   C+N++ D A ++LREMV + I  D
Sbjct: 423 QCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLD 482

Query: 297 DNTYFSLIEGI 307
             T   +  G+
Sbjct: 483 SRTVHQVCNGL 493



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 127/259 (49%), Gaps = 37/259 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QP+  T+ + + G C+  +L+EAS++  +MK   + P  VTYNTLI+GY  +G+
Sbjct: 299 MGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGD 358

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            EMAF F ++MV  GI     TYN LI  L  + K  +A   +KE+ ++ +VP+S T++ 
Sbjct: 359 HEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSA 418

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C   NA + F L+  MI  G  P   T                            
Sbjct: 419 LIMGQCVRKNADRGFELYKSMIRSGCHPNEQT---------------------------- 450

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                  FN L+   C N + + A  +L+EM R  +  D  T + + +G   QGK +  +
Sbjct: 451 -------FNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVK 503

Query: 241 RLLDQMKRRGIKPDHISFN 259
           +LL +M+  G K    SFN
Sbjct: 504 KLLQEME--GKKFLQESFN 520



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 45/249 (18%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           +M   G +PT  + N  +  LL + ++  A    +EM    I P+  T N++++GYCR G
Sbjct: 193 QMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSG 252

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
              K   L  +M   G + T ++Y                                   N
Sbjct: 253 KLDKGIELLQDMERLGFRATDVSY-----------------------------------N 277

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI GHC  G +  A  L   M +  + P+ VT+NTL+HG CR  K++EA ++  +MK  
Sbjct: 278 TLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV 337

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI-- 307
            + P+ +       TYN LI G  +  + ++A     +MV  GI  D  TY +LI G+  
Sbjct: 338 NVAPNTV-------TYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCK 390

Query: 308 -ASVDKAAE 315
            A   KAA+
Sbjct: 391 QAKTRKAAQ 399



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 32/240 (13%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNILINGYCRCGNAKKAFSLHD 139
           T+ +++H L   RK   A+ +L+++   G V  P  + ++ L+  Y  C +  + F    
Sbjct: 117 THAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKV-FDALLYSYRECDSTPRVFD--- 172

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
                          SL    +   +   A   F      G LP +   NA +      G
Sbjct: 173 ---------------SLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQG 217

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A    +EM R K+ P+  T N +M G CR GK+++   LL  M+R G       F 
Sbjct: 218 RVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLG-------FR 270

Query: 260 PTRLTYNALIQGLCKNQEGDLAEEL-LREMVSK-GITPDDNTYFSLIEGIASVDKAAESS 317
            T ++YN LI G C  ++G L+  L L+ M+ K G+ P+  T+ +LI G     K  E+S
Sbjct: 271 ATDVSYNTLIAGHC--EKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEAS 328


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+RGV+ +  T+   +   C EG+++EAS ++ +M E+G  P   TYNT+I+GYC  G 
Sbjct: 377 MKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGK 436

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+   DEM ++G+     T N L+H + +E+++ +A  +  +  ++G + D +TY  
Sbjct: 437 MAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGT 496

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY +   A +A  L +EM   GI  T++TY ++I  L    +  +A       L KG
Sbjct: 497 LIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKG 556

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD    N +I G+C  G +E+AF    +M    + PD  T N L+ G CR+G +E+  
Sbjct: 557 LVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGL 616

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L +    +G   D +       TYN +I   CK +  + A +L+ EM  K + PD  TY
Sbjct: 617 TLFNTWISKGKPMDTV-------TYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTY 669

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+    +  E+
Sbjct: 670 NAIVTGLTKAGRTEEA 685



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 169/345 (48%), Gaps = 31/345 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GVQP+  T+   + G C +   EEA R++ QM E G  P  VTYNT++   C +  L   
Sbjct: 206 GVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQV 265

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M   G+ P  +TYN+L+H     + + EA ++++ M  KG++PD  TYN ++ G
Sbjct: 266 RDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRG 325

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G   +A  L D+M    + P ++TY +LI    +      A +L E   A+G+  +
Sbjct: 326 LCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKEN 385

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V  N +I   CT G I+ A +++ +M      PD  TYNT+++G C+ GK+ EA +++D
Sbjct: 386 GVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMD 445

Query: 245 QMKRRGIKPDHISFNPT----------------------------RLTYNALIQGLCKNQ 276
           +M R+G+K D  + N                               +TY  LI G  K++
Sbjct: 446 EMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDE 505

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAESSN 318
           + D A +L  EM   GI     TY ++I G+      D+A +  N
Sbjct: 506 QADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLN 550



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 175/349 (50%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+ TY + ++ +CK  +L +   +L QMK +GL P   TYN L+ GYC    
Sbjct: 237 MGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKW 296

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M  +G++P   TYN ++  L  E K+ EA  +  +M    +VPD +TYN 
Sbjct: 297 LKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNT 356

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G      +  AF L +EM  +G++   +T+  +I     + ++ EA  +    +  G
Sbjct: 357 LIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESG 416

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +N +I+G+C  G +  A+ ++ EM R  +  D  T NTL+H  C + ++++A 
Sbjct: 417 FSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAY 476

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L  + ++RG   D +++                              T +TYN +I+GL
Sbjct: 477 TLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGL 536

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAESSN 318
           C + + D A + L E++ KG+ PD++T   +I G     +V+KA +  N
Sbjct: 537 CLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHN 585



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 171/322 (53%), Gaps = 4/322 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ D++T  + +  MC E +L++A  +  + ++ G +   VTY TLI GY     
Sbjct: 447 MGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQ 506

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    +EM + GI+ T  TYN +I  L +  K  +A D L E+ EKG+VPD  T NI
Sbjct: 507 ADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNI 566

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC  G  +KAF  H++M+   ++P + T   L+  L ++  + +   LF  +++KG
Sbjct: 567 IIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKG 626

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D V +N +I   C    +E AF L+ EM+   + PD  TYN ++ G  + G+ EEA 
Sbjct: 627 KPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAE 686

Query: 241 RLLDQMKRRGIKPDHISFNP----TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +L  +   +G +      +P    + + Y+  I  LC   +   A +L ++   KG++ +
Sbjct: 687 KLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLN 746

Query: 297 DNTYFSLIEGIASVDKAAESSN 318
             TY  L++G+    K+  +++
Sbjct: 747 KYTYIKLMDGLLKRRKSFTTTS 768



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 12/290 (4%)

Query: 31  RMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM----VKQGIMPTASTYNLL 86
           ++  +MK     P  +T NTL++    + N   +  F  E+    VK G+ P  +T+N+L
Sbjct: 159 QIFNKMKRLRFRPNLLTCNTLLNALV-RSNSSHSLVFSREVFQDAVKLGVQPNVNTFNIL 217

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           IH    +    EA  ++ +MGE G  PD++TYN ++   C+     +   L  +M + G+
Sbjct: 218 IHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGL 277

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P   TY  L+    K   + EA ++ E    KGMLPD+  +N ++ G C  G I+ A  
Sbjct: 278 FPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVR 337

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L  +M+  K+ PD VTYNTL+ G       + A +L+++MK RG+K + +       T+N
Sbjct: 338 LRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGV-------THN 390

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +I+  C   + D A  ++ +MV  G +PD  TY ++I G     K AE+
Sbjct: 391 IMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEA 440



 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 15/297 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+     TY + + G+C  G+ ++A   L ++ E GLVP   T N +I GYC +G 
Sbjct: 517 MKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGA 576

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F ++MV+  + P   T N+L+  L  E  + +   +      KG   D++TYNI
Sbjct: 577 VEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNI 636

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+    + AF L  EM  K ++P   TY +++  L+K  R  EA++L   F  KG
Sbjct: 637 IISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKG 696

Query: 181 ML-------PDI----VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
                    P++    +M++  I   CT G  + A  L ++ ++  V  ++ TY  LM G
Sbjct: 697 QQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDG 756

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
             ++ K      LL  M    I+      NP R  Y  ++       E ++ E +LR
Sbjct: 757 LLKRRKSFTTTSLLPFMVSATIQ--FFDRNPMR--YAHILWCFGFELEIEVPEGVLR 809


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 165/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  DEV Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 169/326 (51%), Gaps = 28/326 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           + D Y +   ++   + G L +A       +E+       T   +++        ++ + 
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN L+NGY 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L KG++P+ V
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 248

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A  L+D+M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 247 KRRGIKPDHISFNPT----------------------------RLTYNALIQGLCKNQEG 278
             +G+KPD I++                                + Y ALI GLC+    
Sbjct: 309 SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRS 368

Query: 279 DLAEELLREMVSKGITPDDNTYFSLI 304
             AE++LREM+S G+ PD  TY  +I
Sbjct: 369 VDAEKMLREMLSVGLKPDARTYTMII 394



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 197

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            L   M++ G+ PD  TY  LI G+    K
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGLCKESK 227


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 160/303 (52%), Gaps = 5/303 (1%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +QPD +TY S + GMC+EG ++ A +++  +   G  P  +TYN L+ G  N+G  E  +
Sbjct: 227 LQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGY 286

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +MV +G      TY++LI  +  + K+ E   +LK+M +KG+ PD   Y+ LI   
Sbjct: 287 ELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAAL 346

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G    A  + D MI  G  P ++ Y +++  L KQ R  EA  +FE     G  P+ 
Sbjct: 347 CKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNA 406

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +N++     + G+  RA  ++ EM    V PD +TYN+L+   CR G V+EA  LL  
Sbjct: 407 SSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVD 466

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M+    +       P+ ++YN ++ GLCK      A E+L  MV KG  P++ TY  LIE
Sbjct: 467 MEMESSE-----CKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIE 521

Query: 306 GIA 308
           GI 
Sbjct: 522 GIG 524



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 163/303 (53%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD   Y + ++G C+  R++ A ++L++MK  G  P  VTYN LI   C++G L+ A  
Sbjct: 123 HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALE 182

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F+++++K+   PT  TY +LI   L++  + EA  +L EM E  + PD  TYN +I G C
Sbjct: 183 FKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMC 242

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G   +AF +   +  KG  P ++TY  L+  L  Q +     +L  + +A+G   ++V
Sbjct: 243 REGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVV 302

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LI   C +G +E    LLK+M +  + PD   Y+ L+   C++G+V+ A  +LD M
Sbjct: 303 TYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVM 362

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD ++       YN ++  LCK +  D A  +  ++   G +P+ ++Y S+   
Sbjct: 363 ISDGCVPDIVN-------YNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSA 415

Query: 307 IAS 309
           + S
Sbjct: 416 LWS 418



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 158/316 (50%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + ++G +PD       + G+     +++A +++  ++ +G  P  + YN +I G+C    
Sbjct: 83  LVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH-PDLIAYNAIITGFCRANR 141

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+   D M  +G  P   TYN+LI  L     +  A +   ++ ++   P  +TY I
Sbjct: 142 IDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTI 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI      G   +A  L DEM+   +QP M TY S+I  + ++  +  A Q+  +  +KG
Sbjct: 202 LIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKG 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N L+ G    G  E  + L+ +M       + VTY+ L+   CR GKVEE  
Sbjct: 262 YAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGV 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  MK++G+KPD   ++P       LI  LCK    DLA E+L  M+S G  PD   Y
Sbjct: 322 GLLKDMKKKGLKPDGYCYDP-------LIAALCKEGRVDLAIEVLDVMISDGCVPDIVNY 374

Query: 301 FSLIEGIASVDKAAES 316
            +++  +    +A E+
Sbjct: 375 NTILACLCKQKRADEA 390



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 8/260 (3%)

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           C  GN   +  F   +V +G  P       LIH L   + + +A  ++  +   G  PD 
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG-HPDL 126

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           I YN +I G+CR      A+ + D M +KG  P ++TY  LI  L  +  +  A +    
Sbjct: 127 IAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQ 186

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            L +   P +V +  LI+     G I+ A  LL EM  + + PD  TYN+++ G CR+G 
Sbjct: 187 LLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGY 246

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           V+ A +++  +  +G  PD I       TYN L++GL    + +   EL+ +MV++G   
Sbjct: 247 VDRAFQIISSISSKGYAPDVI-------TYNILLRGLLNQGKWEAGYELMSDMVARGCEA 299

Query: 296 DDNTYFSLIEGIASVDKAAE 315
           +  TY  LI  +    K  E
Sbjct: 300 NVVTYSVLISSVCRDGKVEE 319



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C  GN   +   L+ +      PD V    L+HG      +++A +++  ++  G     
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG----- 122

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDK 312
              +P  + YNA+I G C+    D A ++L  M +KG +PD  TY  LI  + S   +D 
Sbjct: 123 ---HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDS 179

Query: 313 AAESSN 318
           A E  N
Sbjct: 180 ALEFKN 185


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 173/335 (51%), Gaps = 27/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  P++ TY   + GMC EG +++A  +L  +  +G  P+ V YNT++ G C+   
Sbjct: 228 MRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAER 287

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+++   P  +T+N++I+ L  +  + +A  +L++M + G   + +TYN 
Sbjct: 288 WGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNA 347

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C   N   A  L  +M   G +P ++TY +L+  L    + ++A++L +N    G
Sbjct: 348 IINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNG 407

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD V FN LI   C  G +  A  + K+M      P+ +TY+T++ G  +  K+++A 
Sbjct: 408 CLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQAL 467

Query: 241 RLLDQMKRRGIKPDHI---------------------------SFNPTRLTYNALIQGLC 273
            L ++M  +G  PD I                             +P  + YNA++ GLC
Sbjct: 468 ELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLC 527

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +N + + A +++  MVS G  PDD TY  LIEG+A
Sbjct: 528 RNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLA 562



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 156/307 (50%), Gaps = 7/307 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQP++YTY   +  +C+ G++ +A  +L+ M   G  P  VTYN L++  C       A 
Sbjct: 163 VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 222

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              D M  +G  P   TYN+L+  +  E  + +A ++L+ +   G  P ++ YN ++ G 
Sbjct: 223 ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 282

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C       A  L  EM+ +   P   T+  +I+ L ++  + +A QL E     G   +I
Sbjct: 283 CSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANI 342

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +NA+I+G C   N++ A  LL +M      PD VTYNTL+ G C   +  +A  L+D 
Sbjct: 343 VTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDN 402

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M + G  PD+++F       N LI  LC+      A E+ ++M  KG TP+  TY ++I 
Sbjct: 403 MTQNGCLPDNVTF-------NTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIIS 455

Query: 306 GIASVDK 312
           G+A   K
Sbjct: 456 GLAKATK 462



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 154/293 (52%), Gaps = 10/293 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            YG+   G C+ GRL +A R++  M    + P A TYN LI   C +G +  A S  D+M
Sbjct: 137 AYGALTDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDDM 193

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           + +G  P   TYN+L+      R   +A +++  M  +G  P+++TYN+L++G C  G+ 
Sbjct: 194 LCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDV 253

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
             A  L   +   G +P+ + Y +++  L    R  +AD+L    L +   P+   FN +
Sbjct: 254 DDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVV 313

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I   C  G +++A  LL++M +     + VTYN +++G C Q  V+ A  LL +MK  G 
Sbjct: 314 IYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGC 373

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           KPD +       TYN L++GLC   +   AEEL+  M   G  PD+ T+ +LI
Sbjct: 374 KPDIV-------TYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLI 419



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 13/309 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+      V  +C+ GR ++A R++      G   T V Y  L DGYC  G L  A   
Sbjct: 101 PDAALANRLVRDLCRRGRPDDAERVVGAC---GPAATVVAYGALTDGYCRAGRLGDARRV 157

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              M  Q   P A TYN LIH L    ++ +A  +L +M  +G  PD +TYNIL+   C+
Sbjct: 158 VGGMPVQ---PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCK 214

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
               ++A  L D M  +G  P  +TY  L+  +  +  + +A +L  N  + G  P  V 
Sbjct: 215 GRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVN 274

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N ++ G C+      A  L+ EM R    P+E T+N +++  CR+G +++A +LL++M 
Sbjct: 275 YNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMS 334

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G   + +       TYNA+I GLC+ +  D A  LL +M S G  PD  TY +L++G+
Sbjct: 335 KHGCTANIV-------TYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGL 387

Query: 308 ASVDKAAES 316
            S  +  ++
Sbjct: 388 CSAAQWVDA 396



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 8/286 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  T+   +  +C++G L++A ++LE+M ++G     VTYN +I+G C + N++ A   
Sbjct: 305 PNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGL 364

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M   G  P   TYN L+  L    + V+A++++  M + G +PD++T+N LI   C+
Sbjct: 365 LSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQ 424

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  +  +M  KG  P  +TY+++I  L+K  ++ +A +LF     KG  PD + 
Sbjct: 425 KGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI- 483

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  L +    +  IE A   ++++    + P  V YN ++ G CR GK E A  ++  M 
Sbjct: 484 YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMV 543

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             G  PD        LTY  LI+GL      + A ELL ++ S+ +
Sbjct: 544 SSGCMPDD-------LTYVILIEGLAYEGYLNEARELLIKLCSRDV 582



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 1/251 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   +  TY + ++G+C++  ++ A  +L +MK  G  P  VTYNTL+ G C+   
Sbjct: 333 MSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQ 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M + G +P   T+N LI  L  +  MV+A ++ K+M +KG  P+SITY+ 
Sbjct: 393 WVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYST 452

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  +     +A  L +EM HKG  P  + Y  L   L+  + + EA Q        G
Sbjct: 453 IISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSG 511

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V++NA++ G C NG  E A  ++  M      PD++TY  L+ G   +G + EAR
Sbjct: 512 ISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEAR 571

Query: 241 RLLDQMKRRGI 251
            LL ++  R +
Sbjct: 572 ELLIKLCSRDV 582



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 39/226 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G +PD  TY + + G+C   +  +A  +++ M +NG +P  VT+NTLI   C KG 
Sbjct: 368 MKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGL 427

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD------ 114
           +  A     +M  +G  P + TY+ +I  L    K+ +A ++  EMG KG  PD      
Sbjct: 428 MVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLL 487

Query: 115 ----------------------------SITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
                                       ++ YN ++ G CR G  + A  +   M+  G 
Sbjct: 488 AECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGC 547

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            P  LTY  LI  L+ +  + EA +L     ++      V+ N+LI
Sbjct: 548 MPDDLTYVILIEGLAYEGYLNEARELLIKLCSRD-----VLVNSLI 588


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 165/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 118 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEG 177

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 178 FXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 237

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 238 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPD 297

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LI+G C  G+++ AF   K M +  +  DEV Y  L+ G C++G+  +A ++L 
Sbjct: 298 KITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLR 357

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 358 EMLSVGLKPD-------ARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLM 410

Query: 305 EG 306
            G
Sbjct: 411 NG 412



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 173/333 (51%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 43  LETKGTQRSDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 102

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 103 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 162

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 163 TLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 222

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 223 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 282

Query: 240 RRLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQG 271
             L+D+M  +G+KPD I++                                + Y ALI G
Sbjct: 283 HHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISG 342

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            C+      AE++LREM+S G+ PD  TY  +I
Sbjct: 343 XCQEGRSVDAEKMLREMLSVGLKPDARTYTMII 375



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 134/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 244 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G+   AF     MI + I+   + YT+LI    ++ R ++A+++    L+ G
Sbjct: 304 LINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++     LLKEM R    P  VTYN LM+G
Sbjct: 364 LKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRXGDLDEGF 178

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            L   M++ G+ PD  TY  LI G+    K
Sbjct: 179 XLKSXMLASGVQPDVYTYSVLINGLCKESK 208


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 158/291 (54%), Gaps = 7/291 (2%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V G+CKEG+LEE  +++E     G +P  + YNTLIDGYC KG++EMA     E+  +G 
Sbjct: 192 VKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGF 251

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +PT  TY  +I+    +      D +L EM  +G+  +   YN +I+   + G+  KA  
Sbjct: 252 LPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVE 311

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
             + MI  G +P ++TY +LI    +  ++ EADQL E  L KG++P+   +  LI  +C
Sbjct: 312 TIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYC 371

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G  +RA + L EM      PD VTY  L+HG    G+V+ A  + ++M  RG+ PD  
Sbjct: 372 KQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPD-- 429

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                   YN L+ GLCK  +   A+ LL EM+ + + PD   Y +L++G 
Sbjct: 430 -----AGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGF 475



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K +G  P   TYG+ ++G CK+G  +   R+L +M   GL      YNT+ID     G+
Sbjct: 246 LKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGH 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M++ G  P   TYN LI     + K+ EAD +L++   KG++P+  +Y  
Sbjct: 306 IVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTP 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ G   +A +   EM  +G +P ++TY +L+  L     +  A  + E  L +G
Sbjct: 366 LIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD  ++N L+ G C    +  A  LL EM    V PD   Y TL+ G  R G ++EAR
Sbjct: 426 VFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEAR 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +    +G+       NP  + YNA+I+G CK      A   +  M  + + PD+ TY
Sbjct: 486 KLFELTIEKGM-------NPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTY 538

Query: 301 FSLIEG 306
            ++I+G
Sbjct: 539 STVIDG 544



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 144/250 (57%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY + +SG C++G++ EA ++LEQ    GL+P   +Y  LI  YC +G  + A
Sbjct: 320 GCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRA 379

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            ++  EM ++G  P   TY  L+H L++  ++  A  + ++M E+G+ PD+  YNIL++G
Sbjct: 380 SNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSG 439

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  L  EM+ + + P    Y +L+    +   + EA +LFE  + KGM P 
Sbjct: 440 LCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPG 499

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +NA+I G+C  G ++ A + +  M +  + PDE TY+T++ G  +Q  ++ A+++  
Sbjct: 500 IVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFR 559

Query: 245 QMKRRGIKPD 254
           +M +   KP+
Sbjct: 560 EMVKMKCKPN 569



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 22/308 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+    PD     S ++ + K GR+E A +            T +    ++ G C +G 
Sbjct: 156 LKTYTYFPDVIACNSLLNMLVKLGRIEIARKF-----------TCI----MVKGLCKEGK 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE      ++   QG +P    YN LI     +  M  A+ +  E+  KG +P   TY  
Sbjct: 201 LEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGA 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G+ K    L  EM  +G+   +  Y ++I    K   +++A +  E  +  G
Sbjct: 261 IINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECG 320

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N LI G C +G +  A  LL++     + P++ +Y  L+H  C+QG  + A 
Sbjct: 321 CKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRAS 380

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M  RG KPD +       TY AL+ GL    E D+A  +  +M+ +G+ PD   Y
Sbjct: 381 NWLIEMTERGHKPDLV-------TYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIY 433

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 434 NILMSGLC 441



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +PD  TYG+ V G+   G ++ A  + E+M E G+ P A  YN L+ G C K  
Sbjct: 386 MTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFK 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+ Q ++P A  Y  L+   +    + EA  + +   EKG+ P  + YN 
Sbjct: 446 LPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNA 505

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G  K A +  + M  + + P   TY+++I    KQ+ +  A ++F   +   
Sbjct: 506 MIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMK 565

Query: 181 MLPDIV 186
             P+++
Sbjct: 566 CKPNVM 571



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 137/311 (44%), Gaps = 23/311 (7%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           + + Y S +  + +     E   +LE M+   + PT    + +I  Y + G +E A    
Sbjct: 93  NGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELY 152

Query: 69  DEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             ++K     P     N L+             +ML ++G   I        I++ G C+
Sbjct: 153 YFVLKTYTYFPDVIACNSLL-------------NMLVKLGRIEIARKFTC--IMVKGLCK 197

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  ++   L ++   +G  P ++ Y +LI    K+  M  A+ LF     KG LP +  
Sbjct: 198 EGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVET 257

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + A+I+G C  G+ +    LL EM+   +  +   YNT++  R + G + +A   ++ M 
Sbjct: 258 YGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMI 317

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G KPD +       TYN LI G C++ +   A++LL + + KG+ P+  +Y  LI   
Sbjct: 318 ECGCKPDIV-------TYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 370

Query: 308 ASVDKAAESSN 318
                   +SN
Sbjct: 371 CKQGGYDRASN 381


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 172/335 (51%), Gaps = 42/335 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ +TY   ++G  K+G   E  +M E MK +G+VP A  YN LI  YCN G 
Sbjct: 219 MDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGM 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF    EM ++GI     TYN+LI  L   +K  EA  ++ ++ + G+ P+ +TYNI
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE------ 174
           LING+C  G    A  L +++   G+ PT++TY +LI   SK   +  A  L +      
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 175 ------------------NFLAK-----------GMLPDIVMFNALIDGHCTNGNIERAF 205
                             N+  K           G++PD+  ++ LI G C +GN++ A 
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L K +  M + P+ V YNT++HG C++G    A RLL++M   G+ P+  SF  T    
Sbjct: 459 KLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCST---- 514

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              I  LC++++   AE LL +M++ G+ P  + Y
Sbjct: 515 ---IGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 162/317 (51%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS+ V  D+Y++G  + G C+ G   +  R+L  ++E GL P  V Y TLIDG C  GN
Sbjct: 150 LKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGN 208

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A +   +M + G++P   TY++L++    +    E   M + M   GIVP++  YN 
Sbjct: 209 VMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNC 268

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC  G   KAF +  EM  KGI   ++TY  LI  L +  +  EA +L       G
Sbjct: 269 LISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +N LI+G C  G ++ A  L  ++    + P  VTYNTL+ G  +   +  A 
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M+ R I        P+++TY  LI    +    + A E+   M   G+ PD  TY
Sbjct: 389 DLVKEMEERCIA-------PSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTY 441

Query: 301 FSLIEGIASVDKAAESS 317
             LI G+       E+S
Sbjct: 442 SVLIHGLCVHGNMKEAS 458



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 156/340 (45%), Gaps = 28/340 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+   Y + + G CK G +  A  +  +M   GLVP   TY+ L++G+  +G     
Sbjct: 188 GLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREG 247

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   + M + GI+P A  YN LI E      + +A  +  EM EKGI    +TYNILI G
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A  L  ++   G+ P ++TY  LI       +M  A +LF    + G+ P 
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPT 367

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LI G+    N+  A  L+KEM+   + P +VTY  L+    R    E+A  +  
Sbjct: 368 LVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHS 427

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M++ G+ PD  +++                            P  + YN +I G CK  
Sbjct: 428 LMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEG 487

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
               A  LL EMV  G+ P+  ++ S I  +   +K  E+
Sbjct: 488 SSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEA 527



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 166/362 (45%), Gaps = 59/362 (16%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVT---------------- 47
           +G+Q  S++    ++ +   G L +A  ++ ++  +G +P+++                 
Sbjct: 32  QGLQHTSHSISFILNHLLSSGMLPQAQSLILRLI-SGRIPSSLMLQLTQAHFTPCLTYTP 90

Query: 48  -YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            Y+T+++ Y +  + + A +F   M+ +G +P ++T+N L+  L+      +A  +  E+
Sbjct: 91  LYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNEL 150

Query: 107 GEK----------------------------------GIVPDSITYNILINGYCRCGNAK 132
             K                                  G+ P+ + Y  LI+G C+ GN  
Sbjct: 151 KSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVM 210

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A +L  +M   G+ P   TY+ L+    KQ    E  Q++EN    G++P+   +N LI
Sbjct: 211 LAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLI 270

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
             +C  G +++AF +  EM    +    +TYN L+ G CR  K  EA +L+ ++ + G+ 
Sbjct: 271 SEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLS 330

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           P+ +       TYN LI G C   + D A  L  ++ S G++P   TY +LI G + V+ 
Sbjct: 331 PNIV-------TYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVEN 383

Query: 313 AA 314
            A
Sbjct: 384 LA 385



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 68/121 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD YTY   + G+C  G ++EAS++ + + E  L P +V YNT+I GYC +G+
Sbjct: 429 MEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EMV  G++P  +++   I  L  + K  EA+ +L +M   G+ P    Y +
Sbjct: 489 SYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKM 548

Query: 121 L 121
           +
Sbjct: 549 V 549


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 173/339 (51%), Gaps = 42/339 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++RGV+P   TY   V G+ + G + +   + ++MK   +      Y+ +I+ YC  GN
Sbjct: 209 MENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGN 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    DE V  G+ P   TY  LI+      ++  A+ +L +M  +G+  + I +N 
Sbjct: 269 VRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNT 328

Query: 121 LINGYCRCGNAKKAFSLH-------------------------------DEMIH----KG 145
           +I+GYCR G  +KA  +                                 +++H    KG
Sbjct: 329 MIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKG 388

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  ++YT+LI + +K+  M+EA +LF +   KG  P +V +N +IDG+  NG+I  A 
Sbjct: 389 VAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAE 448

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
              KEM++  + PD  TY  L+HG C  GKV+ A RL ++MK RG KP+ ++       Y
Sbjct: 449 RFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVA-------Y 501

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            AL+ GL K    + A +L  +M++ G+TPDD  Y  L+
Sbjct: 502 TALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLV 540



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 163/318 (51%), Gaps = 28/318 (8%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V G CK G +++A  +L+++  +G+   A  YN+L+D Y  + N +       EM  +G+
Sbjct: 155 VDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKEMENRGV 214

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
            PT  TY +L+  L     + + + +  EM  K +  D   Y+ +IN YCR GN ++A  
Sbjct: 215 EPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRRASE 274

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           + DE +  G++P   TY +LI    K  ++  A+ L  +   +G+  + ++FN +IDG+C
Sbjct: 275 VFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYC 334

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
            +G +E+A  +   M++M +  D  TYNTL  G CR  ++E+A++LL  M  +G+ P+++
Sbjct: 335 RHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYV 394

Query: 257 SFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREM 288
           S+                             P+ +TYN +I G  KN     AE   +EM
Sbjct: 395 SYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEM 454

Query: 289 VSKGITPDDNTYFSLIEG 306
             KG+ PD  TY  L+ G
Sbjct: 455 EKKGLVPDIYTYAGLVHG 472



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 93/165 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P+  +Y + +S   KEG + EA R+   M+  G  P+ VTYN +IDGY   G+
Sbjct: 384 MAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGS 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F+ EM K+G++P   TY  L+H   +  K+  A  + +EM  +G  P+ + Y  
Sbjct: 444 IREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTA 503

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           L++G  + G +++AF L+D+M+  G+ P    Y+ L+  L   +R
Sbjct: 504 LVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSR 548



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           ++ + ++ G C+ G V++A  LLD++ R G+       N     YN+L+    + +  D 
Sbjct: 149 LSASVVVDGFCKSGSVDDAHGLLDELPRHGV-----GLNAC--CYNSLLDSYTRQRNDDA 201

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIA 308
              LL+EM ++G+ P   TY  L++G++
Sbjct: 202 VAGLLKEMENRGVEPTVGTYTILVDGLS 229


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 179/354 (50%), Gaps = 42/354 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G++ +  TY S +   C+ G  +EA+R   QM   G++P  VT+ TLID    KG 
Sbjct: 140 MVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGK 199

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+   + M+KQG  P   TYN L++ L +  +M  A  + + M E+GI  D I+YN 
Sbjct: 200 VQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNT 259

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC  G  ++A +L  +M ++ + P++ TYT L+  L +  R+  A +LF N    G
Sbjct: 260 LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP---------------------- 218
             P +  +  L+DG C NG IE A  + + +  +K  P                      
Sbjct: 320 QSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAM 379

Query: 219 ---DE----------VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
              DE          VTYN +++G C++GK+ EA RL  QM+  G + D ISF       
Sbjct: 380 EIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISF------- 432

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           N +I+G  +  +   A E L+ M  K  +P+D+    L+   A+  +++E  N+
Sbjct: 433 NFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPNN 486



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 159/307 (51%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G QP+  T  + V GMC EG++ +A  + ++M  +G     + Y  LI+       
Sbjct: 1   MKS-GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQ 59

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M+ +       TY L+I  L  +   ++   M +EM   GI P+ I Y+ 
Sbjct: 60  ARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSS 119

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING CR G  ++A +L DEM+ +GI+  ++TY SLI    +     EA + F   + +G
Sbjct: 120 LINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEG 179

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD+V F  LID     G ++ A+ + + M +    P+ VTYN+L++G C   +++ A 
Sbjct: 180 ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAV 239

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL + M  RGIK D IS       YN LI G C + + + A  L R+M  + +TP   TY
Sbjct: 240 RLFEVMVERGIKIDVIS-------YNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTY 292

Query: 301 FSLIEGI 307
             L++ +
Sbjct: 293 TILLKAL 299



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 7/297 (2%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           +TYG  +  +CK+G   +  +M  +M   G+ P  + Y++LI+G C  G L  A +  DE
Sbjct: 80  FTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDE 139

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           MV QGI     TYN LIH         EA     +M  +GI+PD +T+  LI+   + G 
Sbjct: 140 MVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGK 199

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            ++A+ + + MI +G  P ++TY SL+  L   ++M  A +LFE  + +G+  D++ +N 
Sbjct: 200 VQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNT 259

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LI+G+CT+G  E A +L ++M   ++ P   TY  L+    + G++  A+ L + M+  G
Sbjct: 260 LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                   +P+  TY  L+ GLCKN   + A ++ R + S    P    Y  LI G+
Sbjct: 320 Q-------SPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGM 369



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 148/292 (50%), Gaps = 8/292 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY S ++G+C   +++ A R+ E M E G+    ++YNTLI+GYC  G 
Sbjct: 210 MIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGK 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A +   +M  + + P+ +TY +L+  L    ++  A ++   M   G  P   TY +
Sbjct: 270 TEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTV 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G  ++A  +   +     +P++  Y+ LI  + +  R   A ++F+     G
Sbjct: 330 LLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+IV +N +I+G C  G +  A  L  +M+      DE+++N ++ G  ++ +V++A 
Sbjct: 390 LVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAM 449

Query: 241 RLLDQMKRRGIKP-DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
             L +M+ +   P D ++     L Y A        Q  +L    L E+V K
Sbjct: 450 EFLKRMREKNFSPNDSVTLMLVNL-YAA------DAQSSELPNNFLHELVQK 494



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG--RCRQG 234
           +  G  P++V  + L+ G C  G +  A  L  +M R     D + Y  L++   + RQ 
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 235 K--VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +  VE  RR+L ++            +    TY  +I  LCK+       ++ REM++ G
Sbjct: 61  RRAVELHRRMLSEI-----------CSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMG 109

Query: 293 ITPDDNTYFSLIEGIASVDKAAESSN 318
           I P+   Y SLI G+  V K  E+ N
Sbjct: 110 ICPNVIVYSSLINGLCRVGKLREAVN 135


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 159/310 (51%), Gaps = 42/310 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  T+   ++G+C EG L++A  +L+QM+ENG VPT VTYNTL++ YC KG 
Sbjct: 224 MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGR 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M+ +GI     TYN+ I  L    +  +A  +LK+M ++ I P+ +TYN 
Sbjct: 284 YKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNT 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+ + G    A  + +EM    + P  +TY                           
Sbjct: 344 LINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTY--------------------------- 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                   NALI GHC  G+ E A  LL  M+   +  +EVTY TL++G C+  K E A+
Sbjct: 377 --------NALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAK 428

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL++M+   +   HI+       Y  LI GLCKN   D A +L+  M   G+ PD  TY
Sbjct: 429 RLLERMRVNDMVVGHIA-------YTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITY 481

Query: 301 FSLIEGIASV 310
            SLI G   V
Sbjct: 482 SSLINGFCRV 491



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 160/309 (51%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   D +T    VS +C++G+L EA + L  M   GLVP ++TY+ +I+GY + G+
Sbjct: 539 MNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGD 598

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AFSF D+M+K G  P+  TY  L+  L     +VEA   L  +       DS+ YN 
Sbjct: 599 PLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNT 658

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+   C+ GN  +A +L D+M+   + P   TY+SL+  L ++ + + A  LF   + +G
Sbjct: 659 LLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRG 718

Query: 181 ML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            L P+ VM+  L+DG    G+ + AF   +EM +    PD V +N ++    R+G++ +A
Sbjct: 719 TLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKA 778

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
                 M+  G+ P+         TYN L+ G  K Q       L   M+ +GI PD  T
Sbjct: 779 NDFFSTMRWWGVCPN-------LATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLT 831

Query: 300 YFSLIEGIA 308
           + SLI G++
Sbjct: 832 FHSLILGLS 840



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G++ +  TYG+ ++G+CK  + E A R+LE+M+ N +V   + Y  LIDG C  G 
Sbjct: 399 MEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGM 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M K G+ P   TY+ LI+       +  A +++  M   G+V + I Y+ 
Sbjct: 459 LDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYST 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+ GN  +A  ++  M   G      T   L+  L +  ++ EA++   +    G
Sbjct: 519 LIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIG 578

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ + ++ +I+G+ + G+   AFS   +M +   HP   TY +L+ G C+ G + EA+
Sbjct: 579 LVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAK 638

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + L+++        +I      + YN L+   CK+     A  L  +MV   + PD  TY
Sbjct: 639 KFLNRLH-------YIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTY 691

Query: 301 FSLIEGIASVDKAAES 316
            SL+ G+    KA  +
Sbjct: 692 SSLLTGLCRKGKAVTA 707



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRML-EQMKENGLVPTAVTYNTLIDGYCNKG 59
           M    V PDSYTY S ++G+C++G+   A  +    M    L P  V Y  L+DG    G
Sbjct: 679 MVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAG 738

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           + + AF F +EM+K+G  P    +N +I       +M++A+D    M   G+ P+  TYN
Sbjct: 739 HPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYN 798

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL++G+ +     +  SL+  M+ +GI P  LT+ SLI  LSK        +L    + +
Sbjct: 799 ILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIME 858

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G L D   FN LI+ +  +G + +AF L+  M+ + V PD  TYN + +G  ++    E+
Sbjct: 859 GTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRES 918

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L +M   G+ P H         Y  LI G+C+  +   A +L  EM + G    +  
Sbjct: 919 TVVLHEMLENGVIPKHAQ-------YITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVA 971

Query: 300 YFSLIEGIASVDKAAES 316
             +++ G+    K  ++
Sbjct: 972 ESAMVRGLLHCGKTEDA 988



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 149/266 (56%), Gaps = 7/266 (2%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            ++ LI  Y  +G ++ A    + +   G  P+  T N+++  ++ +++      + +EM
Sbjct: 165 VFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREM 224

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
            +KGI P+  T+NILING C  GN KKA +L  +M   G  PT++TY +L+    K+ R 
Sbjct: 225 SDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRY 284

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             A +L +  + KG+  D+  +N  ID  CTN    +A+ LLK+M +  + P+EVTYNTL
Sbjct: 285 KAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTL 344

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           ++G  ++GK+  A ++ ++M +  + P+ +       TYNALI G C   + + A  LL 
Sbjct: 345 INGFVKEGKIGVAAQVFNEMSKFDLSPNCV-------TYNALIGGHCHVGDFEEALRLLD 397

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDK 312
            M + G+  ++ TY +L+ G+   +K
Sbjct: 398 HMEAAGLRLNEVTYGTLLNGLCKHEK 423



 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 42/346 (12%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +G  PD+  + + +    + G++ +A+     M+  G+ P   TYN L+ G+  K  
Sbjct: 750  MMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQA 809

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L    S    M+++GI P   T++ LI  L           +L +M  +G + D  T+NI
Sbjct: 810  LLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNI 869

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LIN Y   G  +KAF L + M   G+ P   TY  +   L+K++   E+  +    L  G
Sbjct: 870  LINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENG 929

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD---------------------------- 212
            ++P    +  LI+G C  G+I+ AF L  EM+                            
Sbjct: 930  VIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAM 989

Query: 213  -------RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                   RM++ P   T+ TLMH  CR  K+ EA +L   M+  G+K D ++       Y
Sbjct: 990  LVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVA-------Y 1042

Query: 266  NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            N LI G+C N +   A EL  EM  + + P+  TY  L++ I++ +
Sbjct: 1043 NVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAAN 1088



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 134/293 (45%), Gaps = 7/293 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G+ PD  T+ S + G+ K G  +   ++L +M   G +    T+N LI+ Y   G 
Sbjct: 820  MMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGK 879

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  AF   + M   G+ P   TYN + + L  +    E+  +L EM E G++P    Y  
Sbjct: 880  MRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYIT 939

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LING CR G+ + AF L DEM   G     +  ++++  L    +  +A  + ++ L   
Sbjct: 940  LINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMR 999

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +LP I  F  L+   C +  I  A  L   M+   +  D V YN L+ G C  G    A 
Sbjct: 1000 LLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAF 1059

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             L ++M+ R + P     N T  TY  L+  +         E+LL ++  +G+
Sbjct: 1060 ELYEEMRHRDLCP-----NIT--TYAVLVDAISAANNLIQGEKLLTDLQERGL 1105



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 35/217 (16%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M + GV PD  TY    +G+ K+    E++ +L +M ENG++P    Y TLI+G C  G+
Sbjct: 890  MNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGD 949

Query: 61   LEMAFSFRDEMVKQG-----------------------------------IMPTASTYNL 85
            ++ AF  +DEM   G                                   ++PT +T+  
Sbjct: 950  IQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTT 1009

Query: 86   LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
            L+H    + K+ EA  +   M   G+  D + YN+LI G C  G++  AF L++EM H+ 
Sbjct: 1010 LMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD 1069

Query: 146  IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            + P + TY  L+  +S  N +I+ ++L  +   +G++
Sbjct: 1070 LCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLI 1106



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 38/90 (42%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+  G++ D   Y   + GMC  G    A  + E+M+   L P   TY  L+D      N
Sbjct: 1030 MELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANN 1089

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
            L        ++ ++G++    +   L  EL
Sbjct: 1090 LIQGEKLLTDLQERGLISWGGSTQHLDKEL 1119


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 166/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E K+ +A+++  EM  KG+VP+S+T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C +G+++ AF   K M +     D+V Y  L+ G CR+G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 176/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
            +++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 62  FETKGTQRSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K++++ +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 242 GLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
             L+D+M  +G+KPD I++                           TRL    Y ALI G
Sbjct: 302 HHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISG 361

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+  +   AE++LREM+S G+ PD  TY  +I
Sbjct: 362 LCREGQSVDAEKMLREMLSVGLKPDARTYTMII 394



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP +VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI +  +   + YT+LI  L ++ + ++A+++    L+ G
Sbjct: 323 LIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 96/177 (54%), Gaps = 7/177 (3%)

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           K  +  ++E++  G   ++  +  L+    K   +  A  +F+     G+ P +V +N L
Sbjct: 124 KLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTL 183

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G+   G+++  F L   M    V PD  TY+ L++G C++ K+++A  L D+M  +G+
Sbjct: 184 MNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGL 243

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            P+ ++F         LI G CKN   DLA E+ ++M+S+ ++PD  TY +LI G+ 
Sbjct: 244 VPNSVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 293



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 145 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 197

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
            L   M++ G+ PD  TY  LI G+   + +D A E
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANE 233


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 175/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++G  + G L +A       +EN L     T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+N+M +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 242 ALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G++PD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 NDLIDEMSMKGLQPD-------KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+ +  EM  K +VP+ +T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A+ L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 139/229 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+++ ++M    LVP  VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A+D++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 197

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+   +K  +++
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGLCKENKMDDAN 232


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 173/325 (53%), Gaps = 19/325 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEA-SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +G + D+ T+   + G+C + R  +A   +L +M E G +P   +YN L+ G C++   +
Sbjct: 121 KGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQ 180

Query: 63  MAFSFRDEMVKQ---GIMPTASTYNLLIHELLME--------RKMVEADDMLKEMGEKGI 111
            A      M      G  P   +YN +++    E        + M +A ++L  M + G+
Sbjct: 181 EALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGV 240

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
           +PD +TYN +++GYC  G  K+A     +M   G++P ++TY+SL+  L K  R  EA +
Sbjct: 241 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 300

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           +F++   +G+ PDI  +  L+ GHC  G +  +  L   M R+ V PD +TYNTL+ G C
Sbjct: 301 IFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 360

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
             GK++EA +LL  M   G+KPD +       TY  LI G C+    D A  L +EMVS 
Sbjct: 361 LAGKMDEATKLLASMVSVGVKPDIV-------TYGTLINGYCRVSRMDDALALFKEMVSS 413

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G++P+  TY  +++G+    + A +
Sbjct: 414 GVSPNIITYNIILQGLFHTRRTAAA 438



 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 174/318 (54%), Gaps = 18/318 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
           M   G  PD ++Y + + G+C E R +EA  +L  M ++   G  P  V+YNT+++G+  
Sbjct: 154 MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFK 213

Query: 58  KG--------NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
           +G         ++ A    + MVK G+MP   TYN ++H      +  EA   LK+M   
Sbjct: 214 EGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 273

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ P+ +TY+ L+N  C+ G + +A  + D M  +G++P + TY +L+    K+ R+IE+
Sbjct: 274 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIES 333

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           ++LF+  +  G+ PDI+ +N LIDG C  G ++ A  LL  M  + V PD VTY TL++G
Sbjct: 334 EKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLING 393

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            CR  ++++A  L  +M   G+ P+ I       TYN ++QGL   +    A+EL   + 
Sbjct: 394 YCRVSRMDDALALFKEMVSSGVSPNII-------TYNIILQGLFHTRRTAAAKELYVSIT 446

Query: 290 SKGITPDDNTYFSLIEGI 307
             G   + +TY  ++ G+
Sbjct: 447 KSGTQLELSTYNIILHGL 464



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 21/320 (6%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P  +TY   +   C+ GRL+     L  + + G    A+T+  L+ G C   + +  M
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
               R  M + G +P   +YN L+  L  E +  EA ++L  M +    G  PD ++YN 
Sbjct: 148 DIVLR-RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 121 LINGYCRCG--------NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           ++NG+ + G           KA  + + M+  G+ P  +TY S++       +  EA   
Sbjct: 207 VLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 266

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
            +   + G+ P++V +++L++  C NG    A  +   M +  + PD  TY TL+ G C+
Sbjct: 267 LKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCK 326

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +G+V E+ +L D M R G+KPD I       TYN LI G C   + D A +LL  MVS G
Sbjct: 327 EGRVIESEKLFDLMVRIGVKPDII-------TYNTLIDGCCLAGKMDEATKLLASMVSVG 379

Query: 293 ITPDDNTYFSLIEGIASVDK 312
           + PD  TY +LI G   V +
Sbjct: 380 VKPDIVTYGTLINGYCRVSR 399



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+P+  TY S ++ +CK GR  EA ++ + M + GL P   TY TL+ G+C +G 
Sbjct: 270 MRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGR 329

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  +    D MV+ G+ P   TYN LI    +  KM EA  +L  M   G+ PD +TY  
Sbjct: 330 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGT 389

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCR      A +L  EM+  G+ P ++TY  ++  L    R   A +L+ +    G
Sbjct: 390 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 449

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              ++  +N ++ G C N   + A  + + +    +  +  T+N ++    + G+++EA+
Sbjct: 450 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 509

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L       G+ PD         TY+ + + L +    +  ++L   M   G + D    
Sbjct: 510 DLFAAHSANGLVPD-------VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRML 562

Query: 301 FSLI 304
            S++
Sbjct: 563 NSIV 566



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 151/289 (52%), Gaps = 19/289 (6%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           + PT  TY  LI   C  G L++ F+    +VK+G    A T+  L+  L  +++  +A 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK---GIQPTMLTYTSL 156
           D +L+ M E G +PD  +YN L+ G C    +++A  L   M      G  P +++Y ++
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207

Query: 157 IFVLSKQ--------NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           +    K+          M +A ++    +  G++PD + +N+++ G+C++G  + A   L
Sbjct: 208 LNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL 267

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           K+M    V P+ VTY++LM+  C+ G+  EAR++ D M +RG++PD         TY  L
Sbjct: 268 KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIA-------TYRTL 320

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           +QG CK      +E+L   MV  G+ PD  TY +LI+G     K  E++
Sbjct: 321 LQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 369



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 117/235 (49%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + + G C  G+++EA+++L  M   G+ P  VTY TLI+GYC    ++ A
Sbjct: 344 GVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDA 403

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EMV  G+ P   TYN+++  L   R+   A ++   + + G   +  TYNI+++G
Sbjct: 404 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 463

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  +   +    +Q    T+  +I  L K  RM EA  LF    A G++PD
Sbjct: 464 LCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPD 523

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  ++ + +     G++E    L   M+      D    N+++    ++G +  A
Sbjct: 524 VRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 578



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 103/212 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TYG+ ++G C+  R+++A  + ++M  +G+ P  +TYN ++ G  +   
Sbjct: 375 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 434

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      + K G     STYN+++H L       EA  M + +    +  ++ T+NI
Sbjct: 435 TAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 494

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    +CG   +A  L       G+ P + TY+ +   L +Q  + E D LF +    G
Sbjct: 495 MIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG 554

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
              D  M N+++      G+I RA + L  +D
Sbjct: 555 CSADSRMLNSIVRKLLQRGDITRAGTYLFMID 586



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 53/117 (45%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +Q ++ T+   +  + K GR++EA  +      NGLVP   TY+ + +    +G+LE   
Sbjct: 485 LQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELD 544

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                M + G    +   N ++ +LL    +  A   L  + EK    ++ T + L+
Sbjct: 545 DLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLL 601


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 9/285 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++ D+ T+ S + G+CK GR++EA+++  +M      P  VTY TLIDGYC  GN
Sbjct: 245 MDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGN 304

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   R EM   G++P  +TYN ++ +L  + KM E + +L EM E+ +  D +T N 
Sbjct: 305 IEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNT 364

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G+   A  +  +M+  G+Q    TY +LI    K   + EA + F   +  G
Sbjct: 365 LINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAG 424

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+  +F+ L+DG C   N +    +  E+ +  + PD+  Y +L+   CR+G V++A+
Sbjct: 425 FSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQ 484

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTY---------NALIQGLCKNQ 276
           ++ DQM+ +G+  D + +     TY         +  + G+ KNQ
Sbjct: 485 KVFDQMQSKGLVGDSLVYATLAYTYLTEGKPVAASNTLDGMAKNQ 529



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 149/322 (46%), Gaps = 28/322 (8%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + +  R  +A R+ +QM+  GL P A     L+           A    DEM + G+  +
Sbjct: 124 LAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAVS 183

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
              YN ++H  L       A+ ++  M   G+  D  +YN +I  YC+ G   +A  + D
Sbjct: 184 THVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRD 243

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
            M  +GI+   +T+ SLI  L K  R+ EA QLF    A    PD V +  LIDG+C  G
Sbjct: 244 RMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAG 303

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
           NIE A  L  EM+   + P   TYN ++   C  GK++E  +LL++M  R ++ DH++ N
Sbjct: 304 NIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCN 363

Query: 260 P----------------------------TRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                         + TY ALI G CK +E D A+E   +MV  
Sbjct: 364 TLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDA 423

Query: 292 GITPDDNTYFSLIEGIASVDKA 313
           G +P+ + +  L++G    + A
Sbjct: 424 GFSPNYSVFSWLVDGFCKKNNA 445



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 154/316 (48%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+   ++ Y + +    K G    A  ++ +M   G+     +YNT+I  YC KG 
Sbjct: 175 MARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGM 234

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A   RD M K+GI     T+N LIH L    ++ EA  +  EM      PD++TY  
Sbjct: 235 RYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTT 294

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR GN ++A  L  EM   G+ P + TY +++  L +  +M E +QL      + 
Sbjct: 295 LIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERK 354

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V  N LI+ +C  G++  A  + K+M    +  ++ TY  L+HG C+  +++EA+
Sbjct: 355 VQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAK 414

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               QM   G  P++  F       + L+ G CK    D    +  E++ +G+ PD   Y
Sbjct: 415 EAFFQMVDAGFSPNYSVF-------SWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVY 467

Query: 301 FSLIEGIAS---VDKA 313
            SLI  +     VD+A
Sbjct: 468 RSLIRRLCRKGLVDQA 483



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 123/226 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P   TY + +  +C++G+++E +++L +M E  +    VT NTLI+ YC +G+
Sbjct: 315 MEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGH 374

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   + +M++ G+     TY  LIH     +++ EA +   +M + G  P+   ++ 
Sbjct: 375 MTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSW 434

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+  NA     + DE++ +G+ P    Y SLI  L ++  + +A ++F+   +KG
Sbjct: 435 LVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQKVFDQMQSKG 494

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
           ++ D +++  L   + T G    A + L  M + +++     YN L
Sbjct: 495 LVGDSLVYATLAYTYLTEGKPVAASNTLDGMAKNQLYITPQIYNCL 540



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 9/230 (3%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P   ++ +L+  L    +  +A  +  +M  +G+ PD+     L+    R      A  +
Sbjct: 114 PRVPSWLVLV--LAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRV 171

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
            DEM   G+  +   Y +++ V  K      A+ L     A G+  D   +N +I  +C 
Sbjct: 172 FDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCK 231

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G    A  +   MD+  +  D VT+N+L+HG C+ G+V+EA +L  +M      PD++ 
Sbjct: 232 KGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNV- 290

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                 TY  LI G C+    + A +L  EM + G+ P   TY +++  +
Sbjct: 291 ------TYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKL 334



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 54/125 (43%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+   +   V G CK+   +    + +++ + GL P    Y +LI   C KG 
Sbjct: 420 MVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLCRKGL 479

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D+M  +G++  +  Y  L +  L E K V A + L  M +  +      YN 
Sbjct: 480 VDQAQKVFDQMQSKGLVGDSLVYATLAYTYLTEGKPVAASNTLDGMAKNQLYITPQIYNC 539

Query: 121 LINGY 125
           L   Y
Sbjct: 540 LCTSY 544


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 159/285 (55%), Gaps = 7/285 (2%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  F  +  
Sbjct: 137 YFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSA 196

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M   G+ P   TY++LI+ L  E KM EA  +  EM ++G+VP+ +T+  LI+G+C+ G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGK 256

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A  ++ +M+ +G  P  +TY +LI+ L K+  + +A  L +    KG+ PD + +  
Sbjct: 257 LDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTT 316

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LIDG C  G++E AF   K M +  +  D+V+Y  L+ G C++G+  +A ++L +M   G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +KPD         TY  ++   CKN +  +  +LL+EM   G  P
Sbjct: 377 LKPD-------TGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVP 414



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 169/329 (51%), Gaps = 29/329 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +EN       T   +++      
Sbjct: 56  LETKGAQRSDIYVFSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ +SF  E+++     +   +N+L+     E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L   M   G+QP + TY+ LI  L K+++M EA +LF+  L +
Sbjct: 176 TLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDR 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M      PD +TYNTL++G C++G + +A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
           + L D+M  +G+KPD I++                            RL   +Y ALI G
Sbjct: 296 KDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTY 300
           LCK      AE++LREM+S G+ PD  TY
Sbjct: 356 LCKEGRSVDAEKMLREMLSVGLKPDTGTY 384



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 130/213 (61%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++EA ++ ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGK 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A     +M+ QG  P   TYN LI+ L  +  + +A D+  EM  KG+ PD ITY  
Sbjct: 257 LDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   ++YT+LI  L K+ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           + PD   +  ++   C NG+++    LLKEM R
Sbjct: 377 LKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQR 409



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 90/152 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD  TY + + G+CK+G L +A  + ++M   GL P  +TY TLIDG C +G+
Sbjct: 267 MLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF +R  M+K+ I     +Y  LI  L  E + V+A+ ML+EM   G+ PD+ TY I
Sbjct: 327 LETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTI 386

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +++ +C+ G+ K    L  EM   G  P ++T
Sbjct: 387 VMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 165/312 (52%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   V+PD   Y + +  +CK   L +A  +  +M   G+ P  VTYN L+ G+C  G+
Sbjct: 194 LEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGH 253

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AFS  +EM  + I P   T+N LI  L  E KM  A  +L  M +  I PD +TYN 
Sbjct: 254 LKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNS 313

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY      K A  +   M   G+ P + TYT++I  L K+  + EA  LFE    K 
Sbjct: 314 LIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKN 373

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PDIV + +LIDG C N ++ERA +L K+M    + PD  +Y  L+   C+ G++E A+
Sbjct: 374 MIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAK 433

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               ++  +G    H++      TYN +I GLCK      A +L  +M  KG  PD  T+
Sbjct: 434 EFFQRLLVKGY---HLNVQ----TYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITF 486

Query: 301 FSLIEGIASVDK 312
            ++I  +   D+
Sbjct: 487 KTIICALFEKDE 498



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 163/305 (53%), Gaps = 7/305 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  P++ T  + + G+C  G +++A    +Q+   G     V+Y TLI+G C  G  + 
Sbjct: 127 RGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKA 186

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 ++    + P    YN +IH L   + + +A D+  EM  KGI P+ +TYN L+ 
Sbjct: 187 VARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVY 246

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G+ K+AFSL +EM  K I P + T+ +LI  L K+ +M  A  +    +   + P
Sbjct: 247 GFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKP 306

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +N+LIDG+     ++ A  +   M +  V P+  TY T++ G C++  V+EA  L 
Sbjct: 307 DVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLF 366

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++MK + + PD +       TY +LI GLCKN   + A  L ++M  +GI PD  +Y  L
Sbjct: 367 EEMKYKNMIPDIV-------TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTIL 419

Query: 304 IEGIA 308
           ++ + 
Sbjct: 420 LDALC 424



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 168/331 (50%), Gaps = 30/331 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+  TY + + G+CKE  ++EA  + E+MK   ++P  VTY +LIDG C   +
Sbjct: 334 MAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHH 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +   +M +QGI P   +Y +L+  L    ++  A +  + +  KG   +  TYN+
Sbjct: 394 LERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNV 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     +A  L  +M  KG  P  +T+ ++I  L +++   +A+++    +A+G
Sbjct: 454 MINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARG 513

Query: 181 ML-----------------------PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
           +                        PD+V +  L+DG+     ++ A  +   M +M V 
Sbjct: 514 LQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVT 573

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P+   Y  ++ G C++  V+EA  L ++MK + + P+ +       TY +LI  LCKN  
Sbjct: 574 PNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIV-------TYTSLIDALCKNHH 626

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            + A  LL+EM   GI PD  +Y  L++G+ 
Sbjct: 627 LERAIALLKEMKEHGIQPDVYSYTILLDGLC 657



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 162/335 (48%), Gaps = 30/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+QPD Y+Y   +  +CK GRLE A    +++   G      TYN +I+G C    
Sbjct: 404 MKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADL 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---------- 110
              A   + +M  +G MP A T+  +I  L  + +  +A+ +L+EM  +G          
Sbjct: 464 FGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLK 523

Query: 111 -------------IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
                        I PD +TY  L++GY      K A  +   M   G+ P +  YT +I
Sbjct: 524 EAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMI 583

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K+  + EA  LFE    K M P+IV + +LID  C N ++ERA +LLKEM    + 
Sbjct: 584 DGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQ 643

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           PD  +Y  L+ G C+ G++E A+ +  ++  +G    H++       Y A+I  LCK   
Sbjct: 644 PDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGY---HLNVQ----VYTAMINELCKAGL 696

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            D A +L  +M  KG  PD  T+  +I  +   D+
Sbjct: 697 FDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDE 731



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 28/329 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P ++ +   +S +           + ++ + NG  P   T N L++ +C+  ++  AFS 
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K+G  P A T N LI  L    ++ +A     ++  +G   + ++Y  LING C+
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCK 180

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K    L  ++    ++P ++ Y ++I  L K   + +A  L+   + KG+ P++V 
Sbjct: 181 TGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVT 240

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +NAL+ G C  G+++ AFSLL EM    ++PD  T+NTL+    ++GK++ A+ +L  M 
Sbjct: 241 YNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMM 300

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           +  IKPD +++N                            P   TY  +I GLCK +  D
Sbjct: 301 KACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVD 360

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIA 308
            A  L  EM  K + PD  TY SLI+G+ 
Sbjct: 361 EAMSLFEEMKYKNMIPDIVTYTSLIDGLC 389



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 166/359 (46%), Gaps = 51/359 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + + PD  T+ + +  + KEG+++ A  +L  M +  + P  VTYN+LIDGY     
Sbjct: 264 MKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNK 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M + G+ P   TY  +I  L  E+ + EA  + +EM  K ++PD +TY  
Sbjct: 324 VKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTS 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + ++A +L  +M  +GIQP + +YT L+  L K  R+  A + F+  L KG
Sbjct: 384 LIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKG 443

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG----------- 229
              ++  +N +I+G C       A  L  +M+     PD +T+ T++             
Sbjct: 444 YHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAE 503

Query: 230 ------------RCRQGKVEEARRLLDQMKRRGIKPDHISF------------------- 258
                         R+ +++EA+ +L  M +  IKPD +++                   
Sbjct: 504 KILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYV 563

Query: 259 ---------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                     P    Y  +I GLCK +  D A  L  EM  K + P+  TY SLI+ + 
Sbjct: 564 FYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALC 622



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 23/274 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGM-----------------------CKEGRLEEASRMLEQMK 37
           M+ +G  PD+ T+ + +  +                        ++ RL+EA  +L  M 
Sbjct: 474 MEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMT 533

Query: 38  ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
           +  + P  VTY TL+DGY     L+ A      M + G+ P    Y ++I  L  ++ + 
Sbjct: 534 KACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVD 593

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA  + +EM  K + P+ +TY  LI+  C+  + ++A +L  EM   GIQP + +YT L+
Sbjct: 594 EAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILL 653

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K  R+  A ++F+  L KG   ++ ++ A+I+  C  G  + A  L  +M+     
Sbjct: 654 DGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCM 713

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           PD VT++ ++     + + ++A ++L +M  RG+
Sbjct: 714 PDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 7/244 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A +  D M+     P    +N ++  L+  +       + K+    G  PD  T NIL+N
Sbjct: 47  AVASFDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMN 106

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +C   +   AFS+   ++ +G  P  +T  +LI  L  +  + +A    +  +A+G   
Sbjct: 107 CFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQL 166

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + V +  LI+G C  G  +    LL++++   V PD V YNT++H  C+   + +A  L 
Sbjct: 167 NQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLY 226

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M  +GI P+ +       TYNAL+ G C       A  LL EM  K I PD  T+ +L
Sbjct: 227 SEMIVKGISPNVV-------TYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTL 279

Query: 304 IEGI 307
           I+ +
Sbjct: 280 IDAL 283



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 95/184 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+   Y   + G+CK+  ++EA  + E+MK   + P  VTY +LID  C   +
Sbjct: 567 MAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHH 626

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +   EM + GI P   +Y +L+  L    ++  A ++ + +  KG   +   Y  
Sbjct: 627 LERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTA 686

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN  C+ G   +A  L  +M  KG  P  +T+  +I+ L +++   +A+++    +A+G
Sbjct: 687 MINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARG 746

Query: 181 MLPD 184
           ++ +
Sbjct: 747 LMKE 750


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/299 (34%), Positives = 165/299 (55%), Gaps = 13/299 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P+SYT+   +S +CK G+LE+A  +L +M+  G+ P  V+YNTLI G+CNKG 
Sbjct: 190 MRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGL 249

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A   ++ M K G+ P   T+N LIH    E K+ EA+    EM    + P+++TYN 
Sbjct: 250 LSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNT 309

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY + GN+  A  +++EM+  G++  +LTY +LI  L K+ +  +A  L +    + 
Sbjct: 310 LINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKEN 369

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   ++ALI G C   N +RAF L K M R   HP+E T+  L     +    E A 
Sbjct: 370 LVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAF 429

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQ---GLCKNQEGDLAEELLREMVSKGITPD 296
            +L  M  R +  D           N L++   GLC+  + +LA +L  EM ++ + P+
Sbjct: 430 NVLMDMFARSMASDS----------NTLLEIYDGLCQCGKENLAMKLCHEMEARRLIPE 478



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 149/276 (53%), Gaps = 7/276 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +   A+ +  +MK+ G +PT  + N  +    +   +++A +F  EM +  I P + T+N
Sbjct: 144 KFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFN 203

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           L++  L    K+ +A ++L+EM   GI P+ ++YN LI G+C  G    A  L + M   
Sbjct: 204 LVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKN 263

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G++P ++T+ SLI    K+ ++ EA++ F       + P+ V +N LI+G+   GN   A
Sbjct: 264 GLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMA 323

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             + +EM R  V  D +TYN L+ G C++GK ++A  L+ ++ +  + P+         T
Sbjct: 324 GKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPN-------AST 376

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           Y+ALI G C  +  D A +L + MV  G  P++ T+
Sbjct: 377 YSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTF 412



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 150/312 (48%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P   +  +++S +    R++ A     +M+   + P + T+N ++   C  G 
Sbjct: 155 MKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGK 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     EM   GI P   +YN LI     +  +  A  +   MG+ G+ P+ +T+N 
Sbjct: 215 LEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNS 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G   +A     EM    + P  +TY +LI    +      A +++E  +  G
Sbjct: 275 LIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI+ +NALI G C  G  ++A  L+KE+D+  + P+  TY+ L+ G+C +   + A 
Sbjct: 335 VKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAF 394

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   M R G  P+         T+  L     KN++ + A  +L +M ++ +  D NT 
Sbjct: 395 QLYKSMVRSGCHPN-------EQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNTL 447

Query: 301 FSLIEGIASVDK 312
             + +G+    K
Sbjct: 448 LEIYDGLCQCGK 459



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 135/261 (51%), Gaps = 9/261 (3%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            +++L   Y +      A      M   G +PT  + N  +  LL   ++  A    +EM
Sbjct: 131 VFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREM 190

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
               I P+S T+N++++  C+ G  +KA  +  EM   GI P +++Y +LI     +  +
Sbjct: 191 RRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLL 250

Query: 167 IEADQLFENFLAK-GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
             A +L +N + K G+ P++V FN+LI G C  G +  A     EM  M V P+ VTYNT
Sbjct: 251 SIATKL-KNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNT 309

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L++G  + G    A ++ ++M R G+K D        LTYNALI GLCK  +   A  L+
Sbjct: 310 LINGYGQVGNSNMAGKVYEEMMRNGVKAD-------ILTYNALILGLCKEGKTKKAAFLV 362

Query: 286 REMVSKGITPDDNTYFSLIEG 306
           +E+  + + P+ +TY +LI G
Sbjct: 363 KELDKENLVPNASTYSALISG 383



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           K   A D+   M + G +P   + N  ++          A + + EM    I P   T+ 
Sbjct: 144 KFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFN 203

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
            ++  L K  ++ +A ++     + G+ P++V +N LI GHC  G +  A  L   M + 
Sbjct: 204 LVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKN 263

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + P+ VT+N+L+HG C++GK+ EA R   +MK   + P+ +       TYN LI G  +
Sbjct: 264 GLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTV-------TYNTLINGYGQ 316

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
               ++A ++  EM+  G+  D  TY +LI G+    K  +++
Sbjct: 317 VGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAA 359



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 25/250 (10%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILINGYCRCGNAKKAF-S 136
           T  T+++++H L  + K   A  +L+ +   + I      ++ L+  Y  C ++ + F S
Sbjct: 75  TLETHSIILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFDS 134

Query: 137 LHDEMIH----------------KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L     H                 G  PT+ +  + +  L   +R+  A   +       
Sbjct: 135 LFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCR 194

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   FN ++   C +G +E+A  +L+EM+ + + P+ V+YNTL+ G C +G +  A 
Sbjct: 195 ISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIAT 254

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L + M + G++P+ +       T+N+LI G CK  +   A     EM    +TP+  TY
Sbjct: 255 KLKNLMGKNGLEPNVV-------TFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTY 307

Query: 301 FSLIEGIASV 310
            +LI G   V
Sbjct: 308 NTLINGYGQV 317


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 164/312 (52%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ T+ + + G+C EG++ EA  + ++    G  P  VTY TL++G C  GN   A
Sbjct: 177 GCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAA 236

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 MV++   P    YN +I  L  +R++ EA ++  EM  KGI PD  TYN LI+ 
Sbjct: 237 IRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHA 296

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     K   +L +EM++  I P ++ +++++  L K+  +  A  + +  + +G+ PD
Sbjct: 297 LCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPD 356

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + AL+DGHC    ++ A  +   M      P+  +YN L++G C+  ++++A  LL+
Sbjct: 357 VVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLE 416

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM  +G+  D +       TYN LI GLC       A  L  EMV+ G  PD  TY  L+
Sbjct: 417 QMSLQGLIADTV-------TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILL 469

Query: 305 EGIASVDKAAES 316
           + +      AE+
Sbjct: 470 DYLCKNHHLAEA 481



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 164/306 (53%), Gaps = 11/306 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD  TYG+ ++G+CK G    A R+L  M +    P  + YNT+ID  C    +  A
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 271

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           F+   EM+ +GI P   TYN LIH L  L E K V    +L EM    I+P+ + ++ ++
Sbjct: 272 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTT--LLNEMVNSKIMPNVVVFSTVV 329

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G    A  + D MI +G++P ++TYT+L+     ++ M EA ++F+  + KG +
Sbjct: 330 DALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCV 389

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +N LI+G+C    +++A  LL++M    +  D VTYNTL+HG C  G+++ A  L
Sbjct: 390 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 449

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M   G  PD +       TY  L+  LCKN     A  LL+ +    +  D   Y  
Sbjct: 450 FHEMVASGQIPDLV-------TYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNI 502

Query: 303 LIEGIA 308
            I+G+ 
Sbjct: 503 AIDGMC 508



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 155/312 (49%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++  C   RL  A  +L ++ + G  P   T+NTLI G C +G 
Sbjct: 138 MDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGK 197

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+ + +G  P   TY  L++ L        A  +L+ M +K   P+ I YN 
Sbjct: 198 IGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNT 257

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF+L  EMI KGI P + TY SLI  L           L    +   
Sbjct: 258 IIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 317

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V+F+ ++D  C  G I  A  ++  M +  V PD VTY  LM G C + +++EA 
Sbjct: 318 IMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV 377

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +G  P+  S       YN LI G C+ Q  D A  LL +M  +G+  D  TY
Sbjct: 378 KVFDTMVHKGCVPNVRS-------YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTY 430

Query: 301 FSLIEGIASVDK 312
            +LI G+  V +
Sbjct: 431 NTLIHGLCHVGR 442



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 157/309 (50%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K         +  QM   G+ P   T N LI+ +C+   L  AFS 
Sbjct: 110 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 169

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +T+N LI  L +E K+ EA  +  +   +G  PD +TY  L+NG C+
Sbjct: 170 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 229

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M+ K  +P ++ Y ++I  L K  ++ EA  LF   + KG+ PDI  
Sbjct: 230 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 289

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI   C     +   +LL EM   K+ P+ V ++T++   C++G +  A  ++D M 
Sbjct: 290 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 349

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
           +RG++PD +       TY AL+ G C   E D A ++   MV KG  P+  +Y  LI G 
Sbjct: 350 KRGVEPDVV-------TYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 402

Query: 307 --IASVDKA 313
             I  +DKA
Sbjct: 403 CQIQRMDKA 411



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 134/250 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ PD +TY S +  +C     +  + +L +M  + ++P  V ++T++D  C +G 
Sbjct: 278 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGM 337

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    D M+K+G+ P   TY  L+    +  +M EA  +   M  KG VP+  +YNI
Sbjct: 338 IAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNI 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L ++M  +G+    +TY +LI  L    R+  A  LF   +A G
Sbjct: 398 LINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  L+D  C N ++  A  LLK ++   +  D + YN  + G CR G++E AR
Sbjct: 458 QIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAAR 517

Query: 241 RLLDQMKRRG 250
            L   +  +G
Sbjct: 518 DLFSNLSCQG 527



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  +P+   Y + +  +CK+ ++ EA  +  +M   G+ P   TYN+LI   CN   
Sbjct: 243 MVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCE 302

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   +  +EMV   IMP    ++ ++  L  E  +  A D++  M ++G+ PD +TY  
Sbjct: 303 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 362

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C      +A  + D M+HKG  P + +Y  LI    +  RM +A  L E    +G
Sbjct: 363 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 422

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D V +N LI G C  G ++ A +L  EM      PD VTY  L+   C+   + EA 
Sbjct: 423 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 482

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            LL  ++   +  D        L YN  I G+C+  E + A +L   +  +G
Sbjct: 483 VLLKAIEGSNLDAD-------ILVYNIAIDGMCRAGELEAARDLFSNLSCQG 527



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 137/281 (48%), Gaps = 7/281 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           L++A     +M      P+ V +  L+       +     S   +M   GI P   T N+
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+     R++  A  +L ++ + G  PD+ T+N LI G C  G   +A  L D+ I +G
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 212

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            QP ++TY +L+  L K      A +L  + + K   P+++ +N +ID  C +  +  AF
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 272

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +L  EM    + PD  TYN+L+H  C   + +    LL++M    I P+ + F       
Sbjct: 273 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF------- 325

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + ++  LCK     +A +++  M+ +G+ PD  TY +L++G
Sbjct: 326 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDG 366



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 7/248 (2%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+     P+   +  L+  +   +       +  +M   GI PD  T NI
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C       AFS+  +++  G QP   T+ +LI  L  + ++ EA  LF+  + +G
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 212

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +  L++G C  GN   A  LL+ M +    P+ + YNT++   C+  +V EA 
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 272

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +GI PD         TYN+LI  LC   E      LL EMV+  I P+   +
Sbjct: 273 NLFSEMITKGISPD-------IFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVF 325

Query: 301 FSLIEGIA 308
            ++++ + 
Sbjct: 326 STVVDALC 333



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 7/185 (3%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A S  + M+H    P+ + +T L+  ++K         L     + G+ PD+   N LI+
Sbjct: 96  ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILIN 155

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C    +  AFS+L ++ ++   PD  T+NTL+ G C +GK+ EA  L D+    G +P
Sbjct: 156 SFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQP 215

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           D +       TY  L+ GLCK      A  LLR MV K   P+   Y ++I+ +    + 
Sbjct: 216 DVV-------TYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQV 268

Query: 314 AESSN 318
            E+ N
Sbjct: 269 TEAFN 273


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  +   + + GL P+ V++NTL++GY   G+L+  
Sbjct: 120 GYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 179

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++  EM +KG+VP+ +T+  LI+G
Sbjct: 180 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 239

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 240 HCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 299

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 300 KITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLR 359

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 360 EMLSAGLKPD-------TGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412

Query: 305 EG 306
            G
Sbjct: 413 NG 414



 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 138/229 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 246 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 306 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAG 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++     LLKEM R    P  VTYN LM+G
Sbjct: 366 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 174/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 45  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLK 104

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    E  +  A  +   + + G+ P  +++N
Sbjct: 105 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFN 164

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 165 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 224

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC +G ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 225 GLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 284

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
             L+D+M  +G+KPD I++                            RL    Y ALI G
Sbjct: 285 HDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISG 344

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ PD  TY  +I
Sbjct: 345 LCQEGRYLDAEKVLREMLSAGLKPDTGTYTMII 377


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 177/339 (52%), Gaps = 29/339 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++PD +TY + + G  K G++++ASR+L+  K  G VP   TY +LI G C  G+
Sbjct: 284 MVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGD 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  +E + +G+ P+   YN LI  L  +  +++A  ++ +M ++G+ PD  TYN+
Sbjct: 344 IDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNL 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G    A +L +  I KG  P + T+ +LI    K+ +M  A  + ++  + G
Sbjct: 404 VINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N++++G C     E      K +      P+ +TYN L+   C+  KV EA 
Sbjct: 464 VTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEAL 523

Query: 241 RLLDQMKRRGIKPDHISFNP-----------------------------TRLTYNALIQG 271
            LL++++ RG+ PD +SF                               T  TYN +I  
Sbjct: 524 DLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINA 583

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
             +  + D+A++L  EM  KG  PD  TY  +I+G   V
Sbjct: 584 FSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKV 622



 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 174/319 (54%), Gaps = 14/319 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P   T+   +  +CK+G L+E  ++L ++ +NG+ P   T+N  I G C KG LE A
Sbjct: 211 GIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGA 270

Query: 65  FS-------FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
            S       +  +MV +G+ P   TYN +I+      K+ +A  +LK+   KG VPD  T
Sbjct: 271 NSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFT 330

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI G C+ G+   A +L +E + KG++P+++ Y +LI  LS+Q  +++A QL  +  
Sbjct: 331 YCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMS 390

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +GM PDI  +N +I+G C  G +  A +LL         PD  T+NTL+ G C++ K++
Sbjct: 391 KEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMD 450

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  +LD M   G+ PD I       TYN+++ GLCK  + +   E  + ++ KG  P+ 
Sbjct: 451 NAIGILDSMWSHGVTPDVI-------TYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNI 503

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY  LIE +    K  E+
Sbjct: 504 ITYNILIESLCKARKVTEA 522



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 164/319 (51%), Gaps = 14/319 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G + ++  Y + +SG  +E    EA  +  +M   G+ P   T+N L+   C KG+
Sbjct: 172 MPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGH 231

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME-------RKMVEADDMLKEMGEKGIVP 113
           L+      ++++K G+ P   T+N+ I  L  +        K+VEA++ L +M  KG+ P
Sbjct: 232 LQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEP 291

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  TYN +I GY + G  + A  +  +   KG  P   TY SLI  + +   +  A  LF
Sbjct: 292 DDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALF 351

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           E  L KG+ P IV++N LI G    G + +A  L+ +M +  + PD  TYN +++G C+ 
Sbjct: 352 EEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKM 411

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G V +A  LL+    +G  PD         T+N LI G CK  + D A  +L  M S G+
Sbjct: 412 GCVSDANNLLNAAIAKGYLPD-------IFTFNTLIDGYCKRLKMDNAIGILDSMWSHGV 464

Query: 294 TPDDNTYFSLIEGIASVDK 312
           TPD  TY S++ G+    K
Sbjct: 465 TPDVITYNSILNGLCKAAK 483



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 167/344 (48%), Gaps = 29/344 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K +G  PD +TY S + G+C++G ++ A  + E+    GL P+ V YNTLI G   +G +
Sbjct: 320 KFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLV 379

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    ++M K+G+ P   TYNL+I+ L     + +A+++L     KG +PD  T+N L
Sbjct: 380 LKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTL 439

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+GYC+      A  + D M   G+ P ++TY S++  L K  +  +  + F+  + KG 
Sbjct: 440 IDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGC 499

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           LP+I+ +N LI+  C    +  A  LL+E+    + PD V++ T++ G C  G ++EA +
Sbjct: 500 LPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQ 559

Query: 242 LLDQMKRR-----GIKPDHISFN------------------------PTRLTYNALIQGL 272
           L  +M+++      +   +I  N                        P   TY  +I G 
Sbjct: 560 LFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGF 619

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK    +   + L + +  G  P   T+  +I  +    +  E+
Sbjct: 620 CKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEA 663



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 137/255 (53%), Gaps = 1/255 (0%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G  PD +T+ + + G CK  +++ A  +L+ M  +G+ P  +TYN++++G C     E
Sbjct: 426 AKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPE 485

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                   ++++G +P   TYN+LI  L   RK+ EA D+L+E+  +G++PD +++  +I
Sbjct: 486 DVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVI 545

Query: 123 NGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +G+C  G+  +A+ L   M  +  I  T+ TY  +I   S++  M  A +LF     KG 
Sbjct: 546 SGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGC 605

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD   +  +IDG C  GN+   +  L +   +   P   T+  +++  C Q +V EA  
Sbjct: 606 DPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVG 665

Query: 242 LLDQMKRRGIKPDHI 256
           ++  M R G+ P+ +
Sbjct: 666 IVHLMVRTGVVPEAV 680



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 166/345 (48%), Gaps = 42/345 (12%)

Query: 14  GSFVSGM---CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           G +VS M    ++G+++EA  + E+M      P+  +YN +++     G    A      
Sbjct: 77  GVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLR 136

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M  +GI P   T+ + I      ++ + A  +L  M  +G   +++ Y  +I+G+     
Sbjct: 137 MKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENY 196

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             +A+ L ++M+  GI P + T+  L+ +L K+  + E ++L    L  G+ P++  FN 
Sbjct: 197 QVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNI 256

Query: 191 LIDGHCTNGNIERAFS-------LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            I G C  G +E A S        L +M    + PD+ TYNT+++G  + GK+++A R+L
Sbjct: 257 FIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRIL 316

Query: 244 DQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKN 275
              K +G  PD  ++                             P+ + YN LI+GL  +
Sbjct: 317 KDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGL--S 374

Query: 276 QEGDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           Q+G +  A +L+ +M  +G++PD  TY  +I G+  +   ++++N
Sbjct: 375 QQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANN 419



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 19/317 (5%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK---ENGLVPTAVTYNTLIDGYCNK 58
           K  G +    TY   +  +   G  +   R+L +M+   +N L+     Y + +  Y  K
Sbjct: 32  KEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEG--VYVSAMRNYGRK 89

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G ++ A    + M      P+  +YN +++ L+      +A  +   M  +GI PD  T+
Sbjct: 90  GKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTF 149

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            I I  +CR      A  L + M  +G +   + Y ++I    ++N  +EA +LF   L 
Sbjct: 150 TIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLR 209

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG---- 234
            G+ P I  FN L+   C  G+++    LL ++ +  V P+  T+N  + G CR+G    
Sbjct: 210 LGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEG 269

Query: 235 ---KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
              KV EA   L +M  +G++PD         TYN +I G  K  +   A  +L++   K
Sbjct: 270 ANSKVVEAENYLHKMVNKGLEPDD-------FTYNTIIYGYSKVGKIQDASRILKDAKFK 322

Query: 292 GITPDDNTYFSLIEGIA 308
           G  PD+ TY SLI G+ 
Sbjct: 323 GFVPDEFTYCSLIIGVC 339



 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 105/185 (56%), Gaps = 1/185 (0%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  P+  TY   +  +CK  ++ EA  +LE+++  GL+P  V++ T+I G+CN G+L+ 
Sbjct: 497 KGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDE 556

Query: 64  AFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           A+     M +Q  I  T +TYN++I+    +  M  A  +  EMG+KG  PDS TY ++I
Sbjct: 557 AYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMI 616

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+C+ GN    +    + I  G  P++ T+  +I  L  Q+R+ EA  +    +  G++
Sbjct: 617 DGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVV 676

Query: 183 PDIVM 187
           P+ V+
Sbjct: 677 PEAVV 681


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 163/308 (52%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+ G+ P+ YTY   + G C++G L EA  +   M+E+G+ P + +Y T I+G C  G 
Sbjct: 210 LKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGR 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ F    +++   I      Y ++I     E K+ EA+ +L+EM ++G  PD   Y  
Sbjct: 270 SDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCA 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC  GN  KA +LHDEM+ KG++   +  +S++  LS+     E    F+ F   G
Sbjct: 330 LISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D   +N ++D  C  G +E A  LL EM   K+ PD + Y T++ G   +GKV +A 
Sbjct: 390 IFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDAL 449

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +MK  G KPD +       TYN L  G  +N     A  LL  M ++G+ PD  T+
Sbjct: 450 NIYREMKDIGHKPDIV-------TYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTH 502

Query: 301 FSLIEGIA 308
             +IEG+ 
Sbjct: 503 NMIIEGLC 510



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 147/301 (48%), Gaps = 11/301 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D + Y   + G C E +L+EA  +L +M++ G  P    Y  LI GYC  GNL  A +  
Sbjct: 288 DVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALH 347

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           DEMV +G+       + ++  L       E  +  KE  + GI  D   YN++++  C+ 
Sbjct: 348 DEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKL 407

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  ++A  L  EM  K + P ++ YT++I     + ++++A  ++      G  PDIV +
Sbjct: 408 GKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTY 467

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N L  G   NG  + A SLL  M+   V PD VT+N ++ G C  GKV++A+   D ++ 
Sbjct: 468 NVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEE 527

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + ++            Y+A++ G C+    + A  LL  +  +G      ++F L+  + 
Sbjct: 528 KCLE-----------NYSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLC 576

Query: 309 S 309
           S
Sbjct: 577 S 577



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 54/304 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++GV+PD+ T+   + G+C  G++++A    + ++E  L      Y+ +++GYC   +
Sbjct: 490 METQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLE----NYSAMVNGYCEANH 545

Query: 61  LEMAFSFRDEMVKQG-----------------------------------IMPTASTYNL 85
           +  AF+    + KQG                                   I PT   Y+ 
Sbjct: 546 VNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSK 605

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L    +M +A  +   + ++G+ PD ITY I+INGYCR    K+A+ +  +M ++G
Sbjct: 606 VIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRG 665

Query: 146 IQPTMLTYTSLIFVLSK---------------QNRMIEADQLFENFLAKGMLPDIVMFNA 190
           I+P ++TYT L+   SK               +  M++   L+       + PD++ +  
Sbjct: 666 IEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTV 725

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LID HC   NI+ A +L  EM    + PD VTY  L+ G C  G +++A  L D+M  +G
Sbjct: 726 LIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKG 785

Query: 251 IKPD 254
           I+PD
Sbjct: 786 IRPD 789



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 159/354 (44%), Gaps = 49/354 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + + PD   Y + +SG   +G++ +A  +  +MK+ G  P  VTYN L  G+   G 
Sbjct: 420 MKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGL 479

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  + M  QG+ P   T+N++I  L +  K+ +A      + EK +      Y+ 
Sbjct: 480 TQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLE----NYSA 535

Query: 121 LINGYCRC-----------------------------------GNAKKAFSLHDEMIHKG 145
           ++NGYC                                     G+++KA  L + M+   
Sbjct: 536 MVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALN 595

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I PTM+ Y+ +I  L +   M +A  +F   + +G+ PD++ +  +I+G+C    ++ A+
Sbjct: 596 INPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAW 655

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD---------HI 256
            +L +M    + PD +TY  L++  C +  +  +   LD MK +    D          +
Sbjct: 656 HVLGDMKNRGIEPDVITYTVLLN-NCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDM 714

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
              P  + Y  LI   CK      A  L  EM+ +G+ PD  TY +L+ G  +V
Sbjct: 715 DIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNV 768



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 162/351 (46%), Gaps = 46/351 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRL---------------------------------- 26
           M+ +G  PD Y Y + +SG C  G L                                  
Sbjct: 315 MEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGM 374

Query: 27  -EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
             E +   ++ K+ G+      YN ++D  C  G +E A     EM  + ++P    Y  
Sbjct: 375 ASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTT 434

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I    ++ K+V+A ++ +EM + G  PD +TYN+L  G+ R G  ++A SL + M  +G
Sbjct: 435 VISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQG 494

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P  +T+  +I  L    ++ +A   F+N   K +      ++A+++G+C   ++ +AF
Sbjct: 495 VKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLEN----YSAMVNGYCEANHVNKAF 550

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +LL  + +      + ++  L+   C +G  E+A  LL+ M    I       NPT + Y
Sbjct: 551 ALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNI-------NPTMIMY 603

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + +I  L +  E + A+ +   +V +G+ PD  TY  +I G   ++K  E+
Sbjct: 604 SKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEA 654



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 146/321 (45%), Gaps = 26/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEA-SRMLEQMKENGLVPTAVT--YNTLIDGYCN 57
           +K  G   D YTY + V  +C  G   +  S ++E +K++G +   +   +  L DG  N
Sbjct: 83  LKESGYSHDPYTYAAIVRILCFWGWSRKLDSILMEIIKKDGNLDFGIVNLFEALGDGIAN 142

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           + +  +     D ++K  +   +  ++             +A D+L +    G  P  ++
Sbjct: 143 E-SFSVLVQVSDALIK--VCVASGMFD-------------QAFDVLLQTKHCGFAPQILS 186

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
            N L+N          A +++ ++   G+ P   TYT  I    ++  + EA  +F +  
Sbjct: 187 CNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDME 246

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G+ P+   +   I+G C +G  +  F +L+++   K+  D   Y  ++ G C + K++
Sbjct: 247 ESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLK 306

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  +L +M+++G  PD          Y ALI G C       A  L  EMVSKG+  + 
Sbjct: 307 EAESILREMEKQGFAPD-------VYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNC 359

Query: 298 NTYFSLIEGIASVDKAAESSN 318
               S+++G++ +  A+E +N
Sbjct: 360 VILSSILQGLSQMGMASEVAN 380



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 17/173 (9%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+ PD  TY   ++G C+  +++EA  +L  MK  G+ P  +TY  L++  C+K +L  
Sbjct: 629 RGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNN-CSKIDLRS 687

Query: 64  AFSFRD----------------EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
           + S  D                EM    I P    Y +LI +      + +A ++  EM 
Sbjct: 688 SSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMI 747

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
           ++G+ PD++TY  L++GYC  GN KKA  L DEM++KGI+P   T + L  +L
Sbjct: 748 DRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPDAHTMSVLHCIL 800



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   ++PD   Y   +   CK   +++A  +  +M + GL P  VTY  L+ GYCN GN
Sbjct: 711 MKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGN 770

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           ++ A    DEM+ +GI P A T ++L H +L  RK+
Sbjct: 771 IKKAVVLFDEMLNKGIRPDAHTMSVL-HCILKVRKV 805



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 103/236 (43%), Gaps = 29/236 (12%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK------GIQPTM------ 150
             ++ E G   D  TY  ++   C  G ++K  S+  E+I K      GI          
Sbjct: 80  FNQLKESGYSHDPYTYAAIVRILCFWGWSRKLDSILMEIIKKDGNLDFGIVNLFEALGDG 139

Query: 151 LTYTSLIFVLSKQNRMIEA-------DQLFENFLAK---GMLPDIVMFNALIDGHCTNGN 200
           +   S   ++   + +I+        DQ F+  L     G  P I+  N L++    +  
Sbjct: 140 IANESFSVLVQVSDALIKVCVASGMFDQAFDVLLQTKHCGFAPQILSCNFLMNRLVESRK 199

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           ++ A ++ +++    ++P++ TY   + G CR+G + EA  +   M+  G+ P+  S   
Sbjct: 200 VDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFS--- 256

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
               Y   I+GLC +   DL  ++L+++++  I  D   Y  +I G  S  K  E+
Sbjct: 257 ----YTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEA 308


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 165/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  +  TY   +    K G++ +  ++ ++M+E G+      Y +LI   C KGN
Sbjct: 266 MKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGN 325

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   DE+ ++G++P++ TY  LI  +    +M  A+ ++ EM  KG+    + +N 
Sbjct: 326 IKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNT 385

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCR G   +A  ++D M  KG Q  + T  ++    ++  R  EA Q     +  G
Sbjct: 386 LINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGG 445

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +    V +  LID +C  GN+E A  L  EM   +V P+ +TYN +++  C+QGKV+EAR
Sbjct: 446 VRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEAR 505

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   MK  G+ PD         TY +LI G C     D A  L  EM  KG+  +  TY
Sbjct: 506 KLWANMKANGMDPDS-------YTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTY 558

Query: 301 FSLIEGIASVDKAAES 316
             +I G++   K+ E+
Sbjct: 559 TVMISGLSKAGKSDEA 574



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 164/351 (46%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+   Y+    V G+C+ G +E++ +++++    G+ P A TYNT+I+ Y    +
Sbjct: 196 MVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRD 255

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                     M K G++    TY LLI   +   KM + + +  EM E+GI  D   Y  
Sbjct: 256 FSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTS 315

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR GN K+AF L DE+  KG+ P+  TY +LI  + K   M  A+ L     +KG
Sbjct: 316 LISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKG 375

Query: 181 MLPDIVMFNALIDGHCTNGNIERA-------------------------FSLLKEMDRMK 215
           +    V+FN LI+G+C  G I+ A                         F+ LK  D  K
Sbjct: 376 VNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAK 435

Query: 216 ----------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                     V    V+Y  L+   C++G VEEA+RL  +M  + ++P+ I       TY
Sbjct: 436 QWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAI-------TY 488

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N +I   CK  +   A +L   M + G+ PD  TY SLI G    D   E+
Sbjct: 489 NVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEA 539



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 139/255 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +G+ P S+TYG+ + G+CK G +  A  ++ +M+  G+  T V +NTLI+GYC KG 
Sbjct: 336 LTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGM 395

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M K+G      T N +       ++  EA   L  M E G+   +++Y  
Sbjct: 396 IDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTN 455

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ GN ++A  L  EM  K +QP  +TY  +I+   KQ ++ EA +L+ N  A G
Sbjct: 456 LIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANG 515

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD   + +LI G C   N++ A  L  EM    +  + VTY  ++ G  + GK +EA 
Sbjct: 516 MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF 575

Query: 241 RLLDQMKRRGIKPDH 255
            L D++KR+G   D+
Sbjct: 576 GLYDEIKRKGYTIDN 590



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D  +   F+    K  R++       +M ++G+  T  +   +++G C +G 
Sbjct: 161 MVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFRRMVDSGVKITVYSLTIVVEGLCRRGE 220

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E +     E   +GI P A TYN +I+  L  R     + +LK M + G+V + +TY +
Sbjct: 221 VEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTL 280

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI    + G       L DEM  +GI+  +  YTSLI    ++  +  A  LF+    KG
Sbjct: 281 LIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKG 340

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP    + ALIDG C  G +  A  L+ EM    V+  +V +NTL++G CR+G ++EA 
Sbjct: 341 LLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEAS 400

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            + D M+++G + D  + N                             + ++Y  LI   
Sbjct: 401 MIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVY 460

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK    + A+ L  EM SK + P+  TY  +I       K  E+
Sbjct: 461 CKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEA 504



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 101/192 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G Q D +T  +  S   +  R +EA + L +M E G+  + V+Y  LID YC +GN
Sbjct: 406 MEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGN 465

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM  + + P A TYN++I+    + K+ EA  +   M   G+ PDS TY  
Sbjct: 466 VEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTS 525

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C   N  +A  L  EM  KG+    +TYT +I  LSK  +  EA  L++    KG
Sbjct: 526 LIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKG 585

Query: 181 MLPDIVMFNALI 192
              D  ++ ALI
Sbjct: 586 YTIDNKVYTALI 597



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 7/252 (2%)

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           Y + G  E      D MVK+G+     +  + +      R++    +  + M + G+   
Sbjct: 145 YVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFRRMVDSGVKIT 204

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             +  I++ G CR G  +K+  L  E   KGI+P   TY ++I    K       +++ +
Sbjct: 205 VYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILK 264

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
                G++ + V +  LI+    NG +     L  EM    +  D   Y +L+   CR+G
Sbjct: 265 VMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKG 324

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            ++ A  L D++  +G+ P       +  TY ALI G+CK  E   AE L+ EM SKG+ 
Sbjct: 325 NIKRAFLLFDELTEKGLLP-------SSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVN 377

Query: 295 PDDNTYFSLIEG 306
                + +LI G
Sbjct: 378 ITQVVFNTLING 389


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRGV PD  T+ + + G  +EG +E A R+  +M E G   T VT N LI+GYC  G 
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  +  + +  G  P   TYN  ++ L     +  A  ++  M ++G  PD  TYNI
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C+ G  ++A  + ++M+ +G  P + T+ +LI  L   NR+ EA  L      KG
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKG 386

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN LI+  C  G+   A  L +EM      PDEVTYNTL+   C  GK+ +A 
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M+  G     I       TYN +I GLCK    + AEE+  +M  +GI+ +  T+
Sbjct: 447 DLLKDMESTGCPRSTI-------TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITF 499

Query: 301 FSLIEGI 307
            +LI+G+
Sbjct: 500 NTLIDGL 506



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 168/308 (54%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY +FV+G+C+   +  A ++++ M + G  P   TYN +++  C  G LE A
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++MV +G +P  +T+N LI  L    ++ EA D+ +++  KG+ PD  T+NILIN 
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+   A  L +EM + G  P  +TY +LI  L    ++ +A  L ++  + G    
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +N +IDG C    IE A  +  +MD   +  + +T+NTL+ G C+  K+++A  L++
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLIN 520

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM   G++P++I       TYN+++   CK  +   A ++L  M + G   D  TY +LI
Sbjct: 521 QMISEGLQPNNI-------TYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLI 573

Query: 305 EGIASVDK 312
            G+    +
Sbjct: 574 NGLCKAGR 581



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 160/306 (52%), Gaps = 10/306 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD YT+   ++ +CK G    A R+ E+MK +G  P  VTYNTLID  C+ G L  
Sbjct: 385 KGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGK 444

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M   G   +  TYN +I  L  + ++ EA+++  +M  +GI  ++IT+N LI+
Sbjct: 445 ALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+      AF L ++MI +G+QP  +TY S++    KQ  + +A  + E   A G   
Sbjct: 505 GLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +  LI+G C  G  + A  +L+ M    + P    YN ++    R+  + +A  L 
Sbjct: 565 DVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLF 624

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYF 301
            +M   G  PD        LTY  + +GLC+   G + E  + + EMV KG  P+ +++ 
Sbjct: 625 REMAEVGEPPDA-------LTYKIVFRGLCRGG-GPIKEAFDFMLEMVDKGFIPEFSSFR 676

Query: 302 SLIEGI 307
            L EG+
Sbjct: 677 MLAEGL 682



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+Q D+  Y   ++ + +  +++    +  +M   G+ P  VT+NTL+   C    +  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM  +G+ P  +T+  L+   + E  +  A  +   M E G     +T N+LING
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+ G  + A     + I  G +P  +TY + +  L + + +  A ++ +  + +G  PD
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +++  C NG +E A  +L +M      PD  T+NTL+   C   ++EEA  L  
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           Q+  +G+ PD         T+N LI  LCK  +  LA  L  EM + G TPD+ TY +LI
Sbjct: 381 QVTVKGVSPD-------VYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLI 433

Query: 305 EGIASVDKAAES 316
           + + S+ K  ++
Sbjct: 434 DNLCSLGKLGKA 445



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 1/259 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY + +  +C  G+L +A  +L+ M+  G   + +TYNT+IDG C K  
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D+M  QGI   A T+N LI  L  ++K+ +A  ++ +M  +G+ P++ITYN 
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNS 536

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  YC+ G+ KKA  + + M   G +  ++TY +LI  L K  R   A ++      KG
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR-QGKVEEA 239
           M P    +N ++       NI  A SL +EM  +   PD +TY  +  G CR  G ++EA
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEA 656

Query: 240 RRLLDQMKRRGIKPDHISF 258
              + +M  +G  P+  SF
Sbjct: 657 FDFMLEMVDKGFIPEFSSF 675



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D  TYG+ ++G+CK GR + A ++L  M+  G+ PT   YN ++     + N
Sbjct: 557 MTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN 616

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYN 119
           +  A S   EM + G  P A TY ++   L      + EA D + EM +KG +P+  ++ 
Sbjct: 617 IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFR 676

Query: 120 ILINGYCRCG 129
           +L  G    G
Sbjct: 677 MLAEGLLNLG 686


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG++PD +TY + + GMCKEG ++ A  M+  ++  G  P  ++YN L+    N+G 
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       +M  +   P   TY++LI  L  + K+ EA ++LK M EKG+ PD+ +Y+ 
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR G    A    + MI  G  P ++ Y +++  L K  +  +A ++F      G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +N +     ++G+  RA  ++ EM    + PDE+TYN+++   CR+G V+EA 
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M+          F+P+ +TYN ++ G CK    + A  +L  MV  G  P++ TY
Sbjct: 494 ELLVDMR-------SCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546

Query: 301 FSLIEGIASVDKAAES 316
             LIEGI      AE+
Sbjct: 547 TVLIEGIGFAGYRAEA 562



 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 167/303 (55%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QPD + Y + ++G CK  R+++A+R+L++M+     P  VTYN +I   C++G L++A  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             ++++     PT  TY +LI   ++E  + EA  ++ EM  +G+ PD  TYN +I G C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +AF +   +  KG +P +++Y  L+  L  Q +  E ++L     ++   P++V
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LI   C +G IE A +LLK M    + PD  +Y+ L+   CR+G+++ A   L+ M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD ++       YN ++  LCKN + D A E+  ++   G +P+ ++Y ++   
Sbjct: 395 ISDGCLPDIVN-------YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 447

Query: 307 IAS 309
           + S
Sbjct: 448 LWS 450



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 8/288 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G   E+  +LE M   G  P  +    LI G+    N+  A    + + K G  P  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
             YN LI+      ++ +A  +L  M  K   PD++TYNI+I   C  G    A  + ++
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           ++    QPT++TYT LI     +  + EA +L +  L++G+ PD+  +N +I G C  G 
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           ++RAF +++ ++     PD ++YN L+     QGK EE  +L+ +M      P+ +    
Sbjct: 279 VDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV---- 334

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
              TY+ LI  LC++ + + A  LL+ M  KG+TPD  +Y  LI    
Sbjct: 335 ---TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC 379



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 130/248 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S    P+  TY   ++ +C++G++EEA  +L+ MKE GL P A +Y+ LI  +C +G 
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A  F + M+  G +P    YN ++  L    K  +A ++  ++GE G  P+S +YN 
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           + +     G+  +A  +  EM+  GI P  +TY S+I  L ++  + EA +L  +  +  
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N ++ G C    IE A ++L+ M      P+E TY  L+ G    G   EA 
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563

Query: 241 RLLDQMKR 248
            L + + R
Sbjct: 564 ELANDLVR 571



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 109/214 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD+Y+Y   ++  C+EGRL+ A   LE M  +G +P  V YNT++   C  G 
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     ++ + G  P +S+YN +   L      + A  M+ EM   GI PD ITYN 
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  CR G   +AF L  +M      P+++TY  ++    K +R+ +A  + E+ +  G
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
             P+   +  LI+G    G    A  L  ++ R+
Sbjct: 539 CRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 8/219 (3%)

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
           +E+  +L+ M  KG  PD I    LI G+    N  KA  +  E++ K  QP +  Y +L
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNAL 164

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I    K NR+ +A ++ +   +K   PD V +N +I   C+ G ++ A  +L ++     
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P  +TY  L+     +G V+EA +L+D+M  RG+KPD         TYN +I+G+CK  
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM-------FTYNTIIRGMCKEG 277

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
             D A E++R +  KG  PD  +Y  L+  + +  K  E
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEE 316



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C +GN   +  LL+ M R   +PD +    L+ G      + +A R+++ +++ G     
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG----- 154

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               P    YNALI G CK    D A  +L  M SK  +PD  TY  +I  + S  K
Sbjct: 155 ---QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 168/306 (54%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G Q +   Y   +S +CK G+++EA ++L +M+ N L P  VTY+ LI G C +G ++
Sbjct: 319 SSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQ 378

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM    I P +  ++ ++  L  +  + +A      +    + PD   YNI+I
Sbjct: 379 QAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMI 438

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +GY + G+ ++A  L+  +  K I P+++T+ SLI+   K  +++EA +L E+    G+ 
Sbjct: 439 DGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLE 498

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P  V +  L++ +C  GNI +   LL EM+   + P  VTY  ++ G C+Q K+EE+ +L
Sbjct: 499 PSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQL 558

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L+ M+ +G+ PD I       TYN +IQ  CK ++   A ELL +M+   + P   TY  
Sbjct: 559 LEDMRAKGLAPDQI-------TYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNV 611

Query: 303 LIEGIA 308
           LI+G+ 
Sbjct: 612 LIDGLC 617



 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 177/334 (52%), Gaps = 29/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
           M+ +G+QPD  TY     G    G +  A  ++++M  + GL P  VTY  LI G+C  G
Sbjct: 246 MEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMG 305

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N+E A   R +++  G       Y++L+  L    ++ EA  +L EM    + PD +TY+
Sbjct: 306 NIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYS 365

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ILI+G C+ G  ++A  L+ EM    I P    ++ ++  L ++  + +A   F++ +  
Sbjct: 366 ILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMS 425

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + PD+ ++N +IDG+   G++E A  L K +    + P  VT+N+L++G C+  KV EA
Sbjct: 426 NLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEA 485

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
           RRLL+ +K  G++P  +++                             PT +TY  +I+G
Sbjct: 486 RRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKG 545

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           LCK ++ + + +LL +M +KG+ PD  TY ++I+
Sbjct: 546 LCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQ 579



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+S+ +   + G+C++G L +A    + +  + L P    YN +IDGY   G++E A   
Sbjct: 394 PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRL 453

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              +  + I P+  T+N LI+     RK+VEA  +L+ +   G+ P ++TY  L+N YC 
Sbjct: 454 YKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCE 513

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN  K   L  EM  K I+PT++TYT +I  L KQ ++ E+ QL E+  AKG+ PD + 
Sbjct: 514 EGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQIT 573

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N +I   C   ++ +AF LL +M    + P   TYN L+ G CR G VE+A R+L  ++
Sbjct: 574 YNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQ 633

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            R I       N T++ Y  +I+  C   +   A ++  +MV KG       Y ++I
Sbjct: 634 DRNI-------NLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVI 683



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K  G    + T    V G+C + R  +A   L Q       P+ V++NT++  YC  G 
Sbjct: 141 IKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGL 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A SF   M+K GI+P   +YN+LIH L++   M EA ++  +M ++G+ PD +TY I
Sbjct: 201 ADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKI 260

Query: 121 LINGYCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +  G+   G    A  +  +M+  +G++P ++TYT LI    +   + EA +L  + L+ 
Sbjct: 261 VAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSS 320

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G   ++++++ L+   C  G ++ A  LL EM+   + PD VTY+ L+HG C+QGKV++A
Sbjct: 321 GFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQA 380

Query: 240 RRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQG 271
            +L  +M    I P+  +                              P    YN +I G
Sbjct: 381 IQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDG 440

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             K  + + A  L + +  K ITP   T+ SLI G     K  E+
Sbjct: 441 YVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEA 485



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 149/300 (49%), Gaps = 42/300 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ + + P   T+ S + G CK  ++ EA R+LE +K +GL P+AVTY TL++ YC +GN
Sbjct: 457 LRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGN 516

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +        EM  + I PT  TY ++I  L  +RK+ E+  +L++M  KG+ PD ITYN 
Sbjct: 517 INKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNT 576

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C+  + +KAF L D+M+   ++PT  TY                           
Sbjct: 577 IIQCFCKAKDMRKAFELLDDMLIHNLEPTPATY--------------------------- 609

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                   N LIDG C  G++E A  +L  +    ++  +V Y T++   C +G  + A 
Sbjct: 610 --------NVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAV 661

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  QM  +G       F  +   Y+A+I  LCK    + A+     M+S G++PD   +
Sbjct: 662 KVFHQMVEKG-------FEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIF 714



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 116/211 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + ++P   TY   + G+CK+ +LEE+ ++LE M+  GL P  +TYNT+I  +C   +
Sbjct: 527 MNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKD 586

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   D+M+   + PT +TYN+LI  L     + +AD +L  + ++ I    + Y  
Sbjct: 587 MRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTT 646

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C  G+A++A  +  +M+ KG + ++  Y+++I  L K+  + EA   F   L+ G
Sbjct: 647 MIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDG 706

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           + PD  +F  +++     G++   F LL  M
Sbjct: 707 VSPDQEIFEMMLNAFHRAGHVHSVFELLAVM 737



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 135/326 (41%), Gaps = 74/326 (22%)

Query: 27  EEASRM-------LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           E ASRM       L +MKE  L P+  TYN+L+    N  + ++ +   +++   G   +
Sbjct: 93  EVASRMVHDALFVLVKMKEQNLRPSIQTYNSLL---YNLRHTDIMWDVYNDIKDSGTPQS 149

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
           A T ++++  L  + +  +A   L++   K   P  +++N +++ YC+ G A  A     
Sbjct: 150 ARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVA----- 204

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
               K     ML Y                          G+LPD   +N LI G    G
Sbjct: 205 ----KSFFCMMLKY--------------------------GILPDTYSYNILIHGLIVAG 234

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM-KRRGIKPDHIS- 257
           ++E A  L  +M++  + PD VTY  +  G    G +  AR ++ +M    G+KPD ++ 
Sbjct: 235 SMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTY 294

Query: 258 ---------------------------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
                                      F    + Y+ L+  LCK  + D A +LL EM +
Sbjct: 295 TVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEA 354

Query: 291 KGITPDDNTYFSLIEGIASVDKAAES 316
             + PD  TY  LI G+    K  ++
Sbjct: 355 NNLQPDLVTYSILIHGLCKQGKVQQA 380



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++P   TY   + G+C+ G +E+A R+L  +++  +  T V Y T+I  +C KG+
Sbjct: 597 MLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGD 656

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     +MV++G   +   Y+ +I+ L     + EA      M   G+ PD   + +
Sbjct: 657 AQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEM 716

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI 146
           ++N + R G+    F L   MI  G+
Sbjct: 717 MLNAFHRAGHVHSVFELLAVMIKFGL 742


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 161/291 (55%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  +  + + +++ GL P+ V++NTL++GY  +G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM EA+++  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L      KG+ PD
Sbjct: 251 HCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C +G++E AF   K M    +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPD-------SGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 414



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 174/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E ++  +  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  K F L   M   G+QP + TY+ LI  L K+++M EA++LF   L K
Sbjct: 176 TLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
           R L+++M  +G+KPD I++                            RL    Y ALI G
Sbjct: 296 RNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ PD  TY  +I
Sbjct: 356 LCQEGRSVDAEKMLREMLSVGLKPDSGTYTMII 388



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 131/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++EA+ +  +M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGK 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A +++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 7/187 (3%)

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           K  +  + E++  G   ++  +  L+    K+  +  +  +F+     G+ P +V FN L
Sbjct: 118 KLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTL 177

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G+   G++++ F L   M    V PD  TY+ L++G C++ K++EA  L  +M  +G+
Sbjct: 178 MNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGL 237

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            P+ ++F         LI G CKN + DLA E+ ++M+S+ ++PD  TY +LI G+    
Sbjct: 238 VPNGVTFT-------TLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 290

Query: 312 KAAESSN 318
              ++ N
Sbjct: 291 DLKQARN 297


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 177/354 (50%), Gaps = 47/354 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD+ TYG  + G+C+ G+L EA ++L ++      P     NTLI+GY   G 
Sbjct: 314 MLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNNAILNTLINGYVMSGQ 369

Query: 61  LEMAFSFRDE-MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A SF +E M+  G  P   TYN+L+H L  E  +  A D++ EM  +G  P+ ITY 
Sbjct: 370 LKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYA 429

Query: 120 ILINGYCR------------------------------CGNAKK-----AFSLHDEMIHK 144
           IL+NG C+                              C   +K     A +L  EM  K
Sbjct: 430 ILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTK 489

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P + TY SLI+ L K +R+ EA +LF N L  G + + V +N LI      G  ++A
Sbjct: 490 GCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKA 549

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +L+ +M       D++TYN L+   C+ G +E+   L +QM   G+  D IS       
Sbjct: 550 LTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTIS------- 602

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            N +I GLCK  + D A E LR+ +++G  PD  TY S++ G+  V +  E+ N
Sbjct: 603 CNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +P+  TY   V+G+CK G LEEA  +L +M   GL   +V YN LI   C K  
Sbjct: 416 MSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEK 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A +   EM  +G  P   TYN LI+ L    ++ EA  +   M   G V +++TYN 
Sbjct: 476 VHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNT 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   R G  +KA +L ++M+ +G     +TY  LI    K   + +  +L+E  +  G
Sbjct: 536 LIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDG 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D +  N +I+G C  G ++ AF  L++       PD VTYN++++G C+ G+++EA 
Sbjct: 596 LGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEAL 655

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+++  G++PD         TYN  I   CK    + A       +  G  P + T+
Sbjct: 656 NLFDRLQVEGVRPD-------AFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTW 708

Query: 301 FSLI 304
             L+
Sbjct: 709 NVLV 712



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 164/319 (51%), Gaps = 16/319 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GV P  +T+G  +  +C    ++ A  +L  M ++G VP ++ Y TLI     K  
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQ 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM   G MP   T+N +IH L    K+ +A  ++  M  +G  PD++TY  
Sbjct: 269 VSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGF 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLF-ENFL 177
           L++G CR G   +A     +++ K   P      +LI  +V+S Q +  EA     E  +
Sbjct: 329 LLHGLCRIGKLNEA----RKILIKIPCPNNAILNTLINGYVMSGQLK--EAQSFLNETMI 382

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G  PDI  +N L+ G C  G++  A  L+ EM R    P+ +TY  L++G C+ G +E
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE 442

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  +L +M  RG+  + +        YN LI  LC+ ++  +A  LL EM +KG  PD 
Sbjct: 443 EAGLVLHEMSARGLTINSV-------IYNCLICALCRKEKVHVALNLLSEMCTKGCKPDL 495

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY SLI G+  VD+  E+
Sbjct: 496 FTYNSLIYGLCKVDRIDEA 514



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 151/305 (49%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G QPD +TY   + G+CKEG L  A  ++ +M   G  P  +TY  L++G C  G 
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGL 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     EM  +G+   +  YN LI  L  + K+  A ++L EM  KG  PD  TYN 
Sbjct: 441 LEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNS 500

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+     +AF L   M+  G     +TY +LI  L ++    +A  L  + L +G
Sbjct: 501 LIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRG 560

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  GNIE+   L ++M    +  D ++ N +++G C+ GKV+ A 
Sbjct: 561 CTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAF 620

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L     RG  PD +       TYN+++ GLCK      A  L   +  +G+ PD  TY
Sbjct: 621 EFLRDAINRGFVPDIV-------TYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTY 673

Query: 301 FSLIE 305
            + I 
Sbjct: 674 NTFIS 678



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 147/331 (44%), Gaps = 26/331 (7%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y  F++ +   G+ +   ++L QMKE G+V     +  ++  Y   G    A     +M
Sbjct: 114 VYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 72  VKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
               +  PT  +Y+L++  L+       A ++  +M  KG+ P   T+ I++   C    
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNE 233

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A SL  +M   G  P  + Y +LI  LS++N++ EA +L E     G +PD+  FN 
Sbjct: 234 VDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFND 293

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL------- 243
           +I G C    I  A  L+  M     +PD +TY  L+HG CR GK+ EAR++L       
Sbjct: 294 VIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPN 353

Query: 244 --------------DQMKRRGIKPD----HISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
                          Q+K      +    +  F P   TYN L+ GLCK      A +L+
Sbjct: 354 NAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLV 413

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            EM  +G  P+  TY  L+ G+       E+
Sbjct: 414 NEMSRRGCEPNVITYAILVNGLCKAGLLEEA 444



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 35/246 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M ++G +PD +TY S + G+CK  R++EA R+   M  +G V   VTYNTLI        
Sbjct: 486 MCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGA 545

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                        +C  GN+E      ++M+  G+     + N+
Sbjct: 546 FQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNI 605

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I+ L    K+  A + L++   +G VPD +TYN ++NG C+ G  K+A +L D +  +G
Sbjct: 606 MINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEG 665

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P   TY + I    K+  + +A   F   +  G +P  + +N L+       N E  F
Sbjct: 666 VRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNF 725

Query: 206 SLLKEM 211
            +L E+
Sbjct: 726 FVLDEL 731


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 168/312 (53%), Gaps = 10/312 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD+ T  + + G+C  G +++     +Q+   G     V+Y TLI+G C  G  + 
Sbjct: 122 RGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKA 181

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 ++    + P    YN +I+ L   + + +A D+  EM  KGI PD +TY  LI+
Sbjct: 182 VARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIH 241

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ--NRMI-EADQLFENFLAKG 180
           G+C  G  K+AFSL +EM  K I P + T++ LI  L K+   +M+ EA  LFE    K 
Sbjct: 242 GFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKN 301

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PDIV +N+LIDG C N ++ERA +LLKEM    + PD  +Y  L+ G C+ G++E A+
Sbjct: 302 MIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAK 361

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                +  +G    H++  P    YN +I GLCK      A +L  +M  KG  P+  T+
Sbjct: 362 EFFQHLLVKGC---HLNVWP----YNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITF 414

Query: 301 FSLIEGIASVDK 312
            ++I  ++  D+
Sbjct: 415 RTIICALSEKDE 426



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 162/304 (53%), Gaps = 10/304 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P ++ + + +S + K  R      + +Q + NG+ P   T + LI+ +C++ ++ +AFS 
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K+G  P A T N LI  L    ++ +      ++  +G   D ++Y  LING C+
Sbjct: 116 FANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCK 175

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K    L  ++    ++P ++ Y ++I  L K   + +A  ++   + KG+ PD+V 
Sbjct: 176 AGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 235

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK---VEEARRLLD 244
           +  LI G C  G ++ AFSLL EM    ++PD  T++ L+    ++GK   V+EA  L +
Sbjct: 236 YTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFE 295

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +MK + + PD +       TYN+LI GLCKN   + A  LL+EM   GI PD  +Y  L+
Sbjct: 296 EMKHKNMIPDIV-------TYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILL 348

Query: 305 EGIA 308
           +G+ 
Sbjct: 349 DGLC 352



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 157/294 (53%), Gaps = 10/294 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q D  +YG+ ++G+CK G  +  +R+L +++ + + P  V YNT+I+  C    L 
Sbjct: 156 AQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLG 215

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM+ +GI P   TY  LIH   +  KM EA  +L EM  K I PD  T+++LI
Sbjct: 216 DACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLI 275

Query: 123 NGYCRCGNAK---KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +   + G  K   +A SL +EM HK + P ++TY SLI  L K + +  A  L +     
Sbjct: 276 DALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEH 335

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD+  +  L+DG C  G +E A    + +     H +   YN +++G C+ G   EA
Sbjct: 336 GIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEA 395

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             L  +M+ +G  P+ I       T+  +I  L +  E D AE++LREM+++G+
Sbjct: 396 MDLKSKMEGKGCMPNAI-------TFRTIICALSEKDENDKAEKILREMIARGL 442



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 153/315 (48%), Gaps = 10/315 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  T    ++  C +  +  A  +   + + G  P A+T NTLI G C +G ++  
Sbjct: 88  GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKT 147

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F D++V QG      +Y  LI+ L    +      +L+++    + PD + YN +IN 
Sbjct: 148 LYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINS 207

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  ++ EMI KGI P ++TYT+LI       +M EA  L      K + PD
Sbjct: 208 LCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPD 267

Query: 185 IVMFNALIDGHCTNGN---IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +  F+ LID     G    ++ A SL +EM    + PD VTYN+L+ G C+   +E A  
Sbjct: 268 VYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIA 327

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL +MK  GI+PD  S       Y  L+ GLCK    ++A+E  + ++ KG   +   Y 
Sbjct: 328 LLKEMKEHGIQPDVYS-------YTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYN 380

Query: 302 SLIEGIASVDKAAES 316
            +I G+       E+
Sbjct: 381 VMINGLCKAGLFGEA 395



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 3/254 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   V+PD   Y + ++ +CK   L +A  +  +M   G+ P  VTY TLI G+C  G 
Sbjct: 189 LEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGK 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME--RKMV-EADDMLKEMGEKGIVPDSIT 117
           ++ AFS  +EM  + I P   T+++LI  L  E  +KMV EA  + +EM  K ++PD +T
Sbjct: 249 MKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVT 308

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LI+G C+  + ++A +L  EM   GIQP + +YT L+  L K  R+  A + F++ L
Sbjct: 309 YNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLL 368

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG   ++  +N +I+G C  G    A  L  +M+     P+ +T+ T++     + + +
Sbjct: 369 VKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDEND 428

Query: 238 EARRLLDQMKRRGI 251
           +A ++L +M  RG+
Sbjct: 429 KAEKILREMIARGL 442



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 103/185 (55%), Gaps = 3/185 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGR---LEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           MK + + PD YT+   +  + KEG+   ++EA  + E+MK   ++P  VTYN+LIDG C 
Sbjct: 259 MKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCK 318

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
             +LE A +   EM + GI P   +Y +L+  L    ++  A +  + +  KG   +   
Sbjct: 319 NHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWP 378

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN++ING C+ G   +A  L  +M  KG  P  +T+ ++I  LS+++   +A+++    +
Sbjct: 379 YNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMI 438

Query: 178 AKGML 182
           A+G+L
Sbjct: 439 ARGLL 443


>gi|255660968|gb|ACU25653.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 376

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLGAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G +E A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMELALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I    NT
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LEGLCSCNRISDAILFLHDAVTKKIVLTKNT 376



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLGAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
               Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 GAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G        E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYN 220


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 169/308 (54%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G +PD  TY   + G   EG + +   +   M+ NG+V     YN LID Y  +G 
Sbjct: 358 MAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGM 417

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M ++G+MP A TY  +I       ++ +A D   +M   G+ PD+I YN 
Sbjct: 418 MDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNS 477

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI G+C  GN  KA  L  EM+ +GI +P  + + S+I  L K+ R++EA  +F+  +  
Sbjct: 478 LIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHI 537

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD++ FN+LIDG+   G +E+AF +L  M  + + PD VTY+ L+ G CR G++++ 
Sbjct: 538 GERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDG 597

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L  +M  +G+KP       T +TY  ++ GL  +     A+++  EM+  G T D +T
Sbjct: 598 LILFREMLSKGVKP-------TTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIST 650

Query: 300 YFSLIEGI 307
              ++ G+
Sbjct: 651 CGIILGGL 658



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 175/371 (47%), Gaps = 64/371 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M  +GV PD  TY S++  +CK   +++A  +L QM  NG  P  VTYN +I GY     
Sbjct: 253 MMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQ 312

Query: 56  ------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                         C  G  + A  F D M  +G  P   TY++
Sbjct: 313 WKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSV 372

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+H    E  +V+  ++   M   GIV D   YNILI+ Y + G   +A  +  +M  +G
Sbjct: 373 LLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERG 432

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P   TY ++I   S+  R+ +A   F   +A G+ PD +++N+LI G C +GN+ +A 
Sbjct: 433 VMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAK 492

Query: 206 SLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----- 259
            L+ EM  R    P+ V +N++++  C++G+V EA+ + D +   G +PD I+FN     
Sbjct: 493 ELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDG 552

Query: 260 -----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                  P  +TY+AL+ G C+N   D    L REM+SKG+ P 
Sbjct: 553 YGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPT 612

Query: 297 DNTYFSLIEGI 307
             TY  ++ G+
Sbjct: 613 TITYGIILHGL 623



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 175/350 (50%), Gaps = 33/350 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M   GV+PD+ +Y + +  +C++ R + A  +L  M  K  G  P  V+YNT+I G+  +
Sbjct: 181 MPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFRE 240

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +  A +   EM++QG++P   TY+  I  L   R M +A+ +L++M   G  PD +TY
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +I+GY   G  K+   +  EM  +G+ P + T  S +  L K  +  EA + F++  A
Sbjct: 301 NCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG  PD+V ++ L+ G+   G +    +L   M+   +  D   YN L+    ++G ++E
Sbjct: 361 KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDE 420

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           A  +  QM+ RG+ PD  ++                             P  + YN+LIQ
Sbjct: 421 AMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQ 480

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYF--SLIEGIASVDKAAESSN 318
           G C +     A+EL+ EM+S+GI P  NT F  S+I  +    +  E+ +
Sbjct: 481 GFCMHGNLVKAKELISEMMSRGI-PRPNTVFFNSIINSLCKEGRVVEAQD 529



 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 142/279 (50%), Gaps = 10/279 (3%)

Query: 34  EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
           E+ +    +PT  TYN L+D  C      + F+     +K G+       N+L+  L   
Sbjct: 108 EEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHA 167

Query: 94  RKMVEADD-MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK--GIQPTM 150
           ++  +A + +L  M E G+ PD+I+Y+ ++   C    +++A  L   M+ K  G  P +
Sbjct: 168 KRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNV 227

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++Y ++I    ++  + +A  LF   + +G++PD+V +++ ID  C    +++A  +L++
Sbjct: 228 VSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQ 287

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M      PD+VTYN ++HG    G+ +E   +  +M RRG+ PD         T N+ + 
Sbjct: 288 MISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPD-------IFTCNSYMS 340

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            LCK+ +   A E    M +KG  PD  TY  L+ G A+
Sbjct: 341 SLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAA 379



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 145/300 (48%), Gaps = 8/300 (2%)

Query: 1   MKSRGV-QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M SRG+ +P++  + S ++ +CKEGR+ EA  + + +   G  P  +T+N+LIDGY   G
Sbjct: 498 MMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVG 557

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +E AF   D M+  GI P   TY+ L+       ++ +   + +EM  KG+ P +ITY 
Sbjct: 558 KMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYG 617

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+++G    G    A  +  EMI  G    + T   ++  L + N   EA  LF+   A 
Sbjct: 618 IILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAM 677

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            +  +I + N +ID        E A  L   +    + P+  TY  ++    ++G VEEA
Sbjct: 678 NVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEA 737

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +   M++ G  P       +RL  N +I+ L +  E   A   L ++  K I+ + +T
Sbjct: 738 DNMFSLMEKSGCAPS------SRL-LNNIIRVLLEKGEISKAGNYLSKVDGKTISLEAST 790



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 111/246 (45%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PD  TY + + G C+ GR+++   +  +M   G+ PT +TY  ++ G  N G 
Sbjct: 569 MISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGR 628

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM++ G     ST  +++  L       EA  + K++G   +  +    N 
Sbjct: 629 TVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINT 688

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +    ++A  L D +   G+ P   TY  +I  L K+  + EAD +F      G
Sbjct: 689 MIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSG 748

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P   + N +I      G I +A + L ++D   +  +  T + ++    R+GK  E  
Sbjct: 749 CAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGKYREQI 808

Query: 241 RLLDQM 246
           + L  M
Sbjct: 809 KSLPAM 814


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 158/304 (51%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  + YTY + ++G+C  GR+ E   ML++ +  G VPTA+TYN++I+G+   G 
Sbjct: 482 MKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGM 541

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF+   +M  +GI P   TY   I           A  ML ++  KG+ PD   YN 
Sbjct: 542 MGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNS 601

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ GN   A  +   M+  G+ P +  Y S I        M EA +L+E  + +G
Sbjct: 602 LIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEG 661

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D   +  LIDG   +GN+  A  L  EM      PD +T+  L HG CR G +++AR
Sbjct: 662 IDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDAR 721

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD+M R  I+P+        L YN LI G  +N +   A  L  EM+ + I PDD TY
Sbjct: 722 KLLDEMNRLDIRPN-------VLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTY 774

Query: 301 FSLI 304
             L+
Sbjct: 775 DILV 778



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 161/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+P   TY S +   C  G ++EA ++  +M   G  P  VTY TL+ G+ NK  
Sbjct: 412 MNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAA 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A++   EM + G+     TYN LI+ L +  ++ E  +MLK    +G VP ++TYN 
Sbjct: 472 FDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNS 531

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G    AF+++ +M  KGI P ++TYTS I    K +    A ++  +   KG
Sbjct: 532 IINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N+LI G C  GN+  A  +L  M +  + P+   YN+ + G      +EEA 
Sbjct: 592 LRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEAL 651

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL ++M + GI  D         TY  LI G  K+     A +L  EMV+KG  PD  T+
Sbjct: 652 RLYEKMIKEGIDLDTA-------TYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITF 704

Query: 301 FSLIEGI 307
            +L  G+
Sbjct: 705 TALTHGL 711



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 159/308 (51%), Gaps = 12/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P +  +   + G+  +   ++A  + ++M ++G +P A TYN LI   C +  
Sbjct: 343 MRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG-IPDAFTYNILIHWLCQRRK 401

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  ++M + G+ P   TY+ L+    +   M EA  +  EM  KG  P+ +TY  
Sbjct: 402 IREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTT 461

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+       KA++L  EM   G+     TY +LI  L    R+ E  ++ + F  +G
Sbjct: 462 LMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEG 521

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N++I+G    G +  AF++ ++M    + P+ VTY + + G C+    + A 
Sbjct: 522 FVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLAL 581

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDN 298
           ++L+ ++ +G++PD  +       YN+LI G C  QEG+++  L  L  M+  G+ P+ +
Sbjct: 582 KMLNDVRCKGLRPDIAA-------YNSLIFGFC--QEGNMSHALQVLVLMLKDGLLPNIS 632

Query: 299 TYFSLIEG 306
            Y S I G
Sbjct: 633 VYNSFITG 640



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 177/446 (39%), Gaps = 148/446 (33%)

Query: 1   MKSRGVQP-----------------------------------DSYTYGSFVSGMCKEGR 25
           M++RGV P                                   D++ +   +    KEG 
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGM 192

Query: 26  LEEASRMLEQ-----------------------------------MKENGLVPTAVTYNT 50
            ++A R+ ++                                   M++ G VP   T+N+
Sbjct: 193 YDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNS 252

Query: 51  LID-----------------------------------GYCNKGNLEMAFSFRDEMVKQG 75
           ++D                                   GYC +  +  A    +E ++ G
Sbjct: 253 VVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDG 312

Query: 76  IMPTASTY-----------------------------------NLLIHELLMERKMVEAD 100
           ++PT  TY                                   N++I  LL ++   +A 
Sbjct: 313 LVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAV 372

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
            + KEM + GI PD+ TYNILI+  C+    ++A +L ++M   G++P ++TY SL+   
Sbjct: 373 SLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCY 431

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
                M EA +L+     KG  P++V +  L+ GH      ++A++LL EM +  V  ++
Sbjct: 432 CVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCND 491

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TYNTL++G C  G+V E   +L + +  G       F PT +TYN++I G  K      
Sbjct: 492 YTYNTLINGLCVVGRVCEVGEMLKRFETEG-------FVPTAMTYNSIINGFIKAGMMGS 544

Query: 281 AEELLREMVSKGITPDDNTYFSLIEG 306
           A  + ++M +KGI P+  TY S I+G
Sbjct: 545 AFAVYQQMCAKGIPPNIVTYTSFIDG 570



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 8/284 (2%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
            M+  G+ P A +   L+       +   A +   EM  +G    A  +++++     E 
Sbjct: 132 SMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEG 191

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
              +A  +  EM    I PD    ++ I   C+  +A +A  +  +M   G  P   T+ 
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           S++ VL K  RM EA  + +  LA G    +V+   L+ G+C    + +A  + +E  R 
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRD 311

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + P +VTY  L+ G   +G  E+A  L  QM+  G+ P    F       N +I+GL  
Sbjct: 312 GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEF-------NMVIKGLLN 364

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           ++    A  L +EM   GI PD  TY  LI  +    K  E+ N
Sbjct: 365 DKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALN 407


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 174/370 (47%), Gaps = 64/370 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+ PD+ TY S + G  K GRL++     E+MK+    P  +TYN LI+ +C  G 
Sbjct: 288 MKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +   F  EM   G+ P   +Y+ L+     E  M +A     +M   G+VP+  TY  
Sbjct: 348 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ GN   AF L +EM+  G++  ++TYT+LI  L    RM EA++LF      G
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++  +NALI G     N++RA  LL E+    + PD + Y T + G C   K+E A+
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAK 527

Query: 241 RLLDQMKRRGIKPDHISF-----------NPTR-----------------LTYNALIQGL 272
            ++++MK  GIK + + +           NPT                  +T+  LI GL
Sbjct: 528 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587

Query: 273 CKNQ------------------------------------EGDLAEELLREMVSKGITPD 296
           CKN+                                    + + A  L  +MV KG+ PD
Sbjct: 588 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647

Query: 297 DNTYFSLIEG 306
              Y SL++G
Sbjct: 648 RTAYTSLMDG 657



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V P + +    +    K G+ ++  R  + M   G  PT  TYN +ID  C +G+
Sbjct: 218 MKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM  +G++P   TYN +I       ++ +     +EM +    PD ITYN 
Sbjct: 278 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNA 337

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C+ G        + EM   G++P +++Y++L+    K+  M +A + + +    G
Sbjct: 338 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   + +LID +C  GN+  AF L  EM ++ V  + VTY  L+ G C   +++EA 
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 457

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ P+  S       YNALI G  K +  D A ELL E+  +GI PD   Y
Sbjct: 458 ELFGKMDTAGVIPNLAS-------YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLY 510

Query: 301 FSLIEGIASVDK 312
            + I G+ S++K
Sbjct: 511 GTFIWGLCSLEK 522



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 158/319 (49%), Gaps = 11/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+ +  TY + + G+C   R++EA  +  +M   G++P   +YN LI G+    N
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +E+  +GI P    Y   I  L    K+  A  ++ EM E GI  +S+ Y  
Sbjct: 488 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTT 547

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
           L++ Y + GN  +   L DEM    I+ T++T+  LI  L K   + +A   F       
Sbjct: 548 LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 607

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  +  +F A+IDG C +  +E A +L ++M +  + PD   Y +LM G  +QG V EA
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L D+M   G+K D        L Y +L+ GL    +   A   L EM+ +GI PD+  
Sbjct: 668 LALRDKMAEIGMKLD-------LLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVL 720

Query: 300 YFSLIEG---IASVDKAAE 315
             S+++    +  +D+A E
Sbjct: 721 CISVLKKHYELGCIDEAVE 739



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 159/314 (50%), Gaps = 10/314 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    + +  S +   G LEEA +   +MK   + P   + N L+  +   G  +    F
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+  G  PT  TYN++I  +  E  +  A  + +EM  +G+VPD++TYN +I+G+ +
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G         +EM     +P ++TY +LI    K  ++    + +      G+ P++V 
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ L+D  C  G +++A     +M R+ + P+E TY +L+   C+ G + +A RL ++M 
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 429

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G++ + +       TY ALI GLC  +    AEEL  +M + G+ P+  +Y +LI G 
Sbjct: 430 QVGVEWNVV-------TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 482

Query: 308 A---SVDKAAESSN 318
               ++D+A E  N
Sbjct: 483 VKAKNMDRALELLN 496



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 1/243 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K RG++PD   YG+F+ G+C   ++E A  ++ +MKE G+   ++ Y TL+D Y   GN
Sbjct: 498 LKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 557

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG-EKGIVPDSITYN 119
                   DEM +  I  T  T+ +LI  L   + + +A D    +  + G+  ++  + 
Sbjct: 558 PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFT 617

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+    + A +L ++M+ KG+ P    YTSL+    KQ  ++EA  L +     
Sbjct: 618 AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEI 677

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           GM  D++ + +L+ G      +++A S L+EM    +HPDEV   +++      G ++EA
Sbjct: 678 GMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEA 737

Query: 240 RRL 242
             L
Sbjct: 738 VEL 740


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 177/354 (50%), Gaps = 47/354 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD+ TYG  + G+C+ G+L EA ++L ++      P     NTLI+GY   G 
Sbjct: 314 MLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNNAILNTLINGYVMSGQ 369

Query: 61  LEMAFSFRDE-MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A SF +E M+  G  P   TYN+L+H L  E  +  A D++ EM  +G  P+ ITY 
Sbjct: 370 LKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYA 429

Query: 120 ILINGYCR------------------------------CGNAKK-----AFSLHDEMIHK 144
           IL+NG C+                              C   +K     A +L  EM  K
Sbjct: 430 ILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTK 489

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P + TY SLI+ L K +R+ EA +LF N L  G + + V +N LI      G  ++A
Sbjct: 490 GCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKA 549

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +L+ +M       D++TYN L+   C+ G +E+   L +QM   G+  D IS       
Sbjct: 550 LTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTIS------- 602

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            N +I GLCK  + D A E LR+ +++G  PD  TY S++ G+  V +  E+ N
Sbjct: 603 CNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 164/319 (51%), Gaps = 16/319 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GV P  +T+G  +  +C    ++ A  +L  M ++G VP ++ Y TLI     K  
Sbjct: 209 MLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQ 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM   G MP   T+N +IH L    K+ +A  ++  M  +G  PD++TY  
Sbjct: 269 VSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGF 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLF-ENFL 177
           L++G CR G   +A     +++ K   P      +LI  +V+S Q +  EA     E  +
Sbjct: 329 LLHGLCRIGKLNEA----RKILIKIPCPNNAILNTLINGYVMSGQLK--EAQSFLNETMI 382

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G  PDI  +N L+ G C  G++  A  L+ EM R    P+ +TY  L++G C+ G +E
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE 442

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  +L +M  RG+  + +        YN LI  LC+ ++  +A  LL EM +KG  PD 
Sbjct: 443 EAGLVLHEMSARGLTINSV-------IYNCLICALCRKEKVHVALNLLSEMCTKGCKPDL 495

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY SLI G+  VD+  E+
Sbjct: 496 FTYNSLIYGLCKVDRIDEA 514



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +P+  TY   V+G+CK G LEEA  +L +M   GL   +V YN LI   C K  
Sbjct: 416 MSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEK 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A +   EM  +G  P   TYN LI+ L    ++ EA  +   M   G V +++TYN 
Sbjct: 476 VHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNT 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   R G  +KA +L ++M+ +G     +TY  LI    K   + +  +L+E  +  G
Sbjct: 536 LIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDG 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D +  N +I+G C  G ++ AF  L++       PD VTYN++++G C+ G+++EA 
Sbjct: 596 LGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEAL 655

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+++  G++PD         TYN  I   CK    + A       +  G  P + T+
Sbjct: 656 NLFDRLQVEGVRPD-------AFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTW 708

Query: 301 FSLI 304
             L+
Sbjct: 709 NVLV 712



 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 151/305 (49%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G QPD +TY   + G+CKEG L  A  ++ +M   G  P  +TY  L++G C  G 
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGL 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     EM  +G+   +  YN LI  L  + K+  A ++L EM  KG  PD  TYN 
Sbjct: 441 LEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNS 500

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+     +AF L   M+  G     +TY +LI  L ++    +A  L  + L +G
Sbjct: 501 LIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRG 560

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  GNIE+   L ++M    +  D ++ N +++G C+ GKV+ A 
Sbjct: 561 CTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAF 620

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L     RG  PD +       TYN+++ GLCK      A  L   +  +G+ PD  TY
Sbjct: 621 EFLRDAINRGFVPDIV-------TYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTY 673

Query: 301 FSLIE 305
            + I 
Sbjct: 674 NTFIS 678



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 147/331 (44%), Gaps = 26/331 (7%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y  F++ +   G+ +   ++L QMKE G+V     +  ++  Y   G    A     +M
Sbjct: 114 VYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 72  VKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
               +  PT  +Y+L++  L+       A ++  +M  KG+ P   T+ I++   C    
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNE 233

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A SL  +M   G  P  + Y +LI  LS++N++ EA +L E     G +PD+  FN 
Sbjct: 234 VDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFND 293

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL------- 243
           +I G C    I  A  L+  M     +PD +TY  L+HG CR GK+ EAR++L       
Sbjct: 294 VIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPN 353

Query: 244 --------------DQMKRRGIKPD----HISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
                          Q+K      +    +  F P   TYN L+ GLCK      A +L+
Sbjct: 354 NAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLV 413

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            EM  +G  P+  TY  L+ G+       E+
Sbjct: 414 NEMSRRGCEPNVITYAILVNGLCKAGLLEEA 444



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 35/246 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M ++G +PD +TY S + G+CK  R++EA R+   M  +G V   VTYNTLI        
Sbjct: 486 MCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGA 545

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                        +C  GN+E      ++M+  G+     + N+
Sbjct: 546 FQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNI 605

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I+ L    K+  A + L++   +G VPD +TYN ++NG C+ G  K+A +L D +  +G
Sbjct: 606 MINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEG 665

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P   TY + I    K+  + +A   F   +  G +P  + +N L+       N E  F
Sbjct: 666 VRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNF 725

Query: 206 SLLKEM 211
            +L E+
Sbjct: 726 FVLDEL 731


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  PD  TY   ++G+C+EGR+++A   LE +   G  P  V+YN ++ G      
Sbjct: 7   MRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAER 66

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYN 119
            E A    +EM  +G  P   T+N+LI   L  R +VE A ++L+++ + G  P+S++YN
Sbjct: 67  WEDAEKLMEEMAHKGCPPNVVTFNMLI-SFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYN 125

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++ +C+     KA +  + M+ +G  P +++Y +L+  L +   +  A  L      K
Sbjct: 126 PLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGK 185

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P ++ +N +IDG    G  + A  LL EM    + PD +TY T+  G CR+ K+EEA
Sbjct: 186 GCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEA 245

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            R   +++  GI+       PT + YNA++ GLCK +E   A +L   M+S G  P+++T
Sbjct: 246 IRTFCKVQDMGIR-------PTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNEST 298

Query: 300 YFSLIEGIA 308
           Y  L+EG+A
Sbjct: 299 YTILVEGLA 307



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 140/251 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  T+   +S +C+ G +E A  +LEQ+ + G  P +++YN L+  +C +  
Sbjct: 77  MAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 136

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +F + MV +G  P   +YN L+  L    ++  A D+L ++  KG  P  I+YN 
Sbjct: 137 MDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNT 196

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  K+A  L DEMI KG+QP ++TYT++   L +++++ EA + F      G
Sbjct: 197 VIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMG 256

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V++NA++ G C       A  L   M      P+E TY  L+ G   +G V+EAR
Sbjct: 257 IRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEAR 316

Query: 241 RLLDQMKRRGI 251
            LL Q+  RG+
Sbjct: 317 DLLGQLCSRGV 327



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 91/182 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  +Y + ++ +C+ G ++ A  +L Q+K  G  P  ++YNT+IDG    G 
Sbjct: 147 MVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGK 206

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    DEM+ +G+ P   TY  +   L  E K+ EA     ++ + GI P  + YN 
Sbjct: 207 TKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNA 266

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+      A  L   MI  G  P   TYT L+  L+ +  + EA  L     ++G
Sbjct: 267 ILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLCSRG 326

Query: 181 ML 182
           ++
Sbjct: 327 VV 328


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 171/333 (51%), Gaps = 30/333 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P  Y+Y   + G+CK G L +A  ++  MK NG+ P AVTY  L+ GYC+ G 
Sbjct: 352 MIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGK 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S   EM++   +P A T N+L+H L    ++ EA+++L++M EKG   D++T NI
Sbjct: 412 VDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNI 471

Query: 121 LINGYCRCGNAKKAFSL-----------------------HDEMIHKGIQPTMLTYTSLI 157
           +++G C  G   KA  +                        D +I     P ++TY++L+
Sbjct: 472 IVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLL 531

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K  R  EA  LF   + + + PD + +N  I   C  G I  AF +LK+M++   H
Sbjct: 532 NGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCH 591

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
               TYN+L+ G   + ++ E   L+D+M+ +GI P+         TYN  IQ LC+  +
Sbjct: 592 KSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNIC-------TYNTAIQYLCEGGK 644

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            + A  LL EM+ K I P+  ++  LI     V
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKV 677



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 168/322 (52%), Gaps = 14/322 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +P+ +T+G  V G CK G  ++   +L  M+  G++P  V YNT++  +C +G 
Sbjct: 173 MPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGR 232

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV----PDSI 116
            + +    ++M ++G++P   T+N  I  L  E K+++A  +  +M     +    P+SI
Sbjct: 233 NDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSI 292

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN+++ G+C+ G  + A +L + +       ++ +Y   +  L +  + IEA+ + +  
Sbjct: 293 TYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQM 352

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           + KG+ P I  +N L+DG C  G +  A +++  M R  V PD VTY  L+HG C  GKV
Sbjct: 353 IDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKV 412

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + A+ LL +M R    P+         T N L+  L        AEELLR+M  KG   D
Sbjct: 413 DAAKSLLQEMMRNNCLPN-------AYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLD 465

Query: 297 DNTYFSLIEGIAS---VDKAAE 315
             T   +++G+     +DKA E
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIE 487



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 170/373 (45%), Gaps = 75/373 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV----PTAVTYNTLIDGYC 56
           M+  G+ PD  T+ S +S +CKEG++ +ASR+   M+ +  +    P ++TYN ++ G+C
Sbjct: 243 MREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFC 302

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI----- 111
             G LE A +  + + +   + +  +YN+ +  L+   K +EA+ +LK+M +KGI     
Sbjct: 303 KVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIY 362

Query: 112 ------------------------------VPDSITYNILINGYCRCGNAKKAFSLHDEM 141
                                          PD++TY  L++GYC  G    A SL  EM
Sbjct: 363 SYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEM 422

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +     P   T   L+  L    R+ EA++L      KG   D V  N ++DG C +G +
Sbjct: 423 MRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGEL 482

Query: 202 ERAFSLLKEMDRMKVH--------------------------PDEVTYNTLMHGRCRQGK 235
           ++A  ++K    M+VH                          PD +TY+TL++G C+ G+
Sbjct: 483 DKAIEIVK---GMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR 539

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
             EA+ L  +M    ++PD        L YN  I   CK  +   A  +L++M  KG   
Sbjct: 540 FAEAKTLFAEMMGEKLQPD-------SLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHK 592

Query: 296 DDNTYFSLIEGIA 308
              TY SLI G+ 
Sbjct: 593 SLETYNSLILGLG 605



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 139/272 (51%), Gaps = 11/272 (4%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P    YN L++    +  +E       +MV  GI P   T+NLLI  L     +  A ++
Sbjct: 110 PGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAAREL 169

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
             EM EKG  P+  T+ IL+ GYC+ G   K   L + M   G+ P  + Y +++    +
Sbjct: 170 FDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCR 229

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV----HP 218
           + R  ++++L E    +G++PDIV FN+ I   C  G +  A  +  +M+  +      P
Sbjct: 230 EGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRP 289

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           + +TYN ++ G C+ G +E+A+ L + ++      D +S      +YN  +QGL ++ + 
Sbjct: 290 NSITYNLMLKGFCKVGLLEDAKTLFESIREN---DDLVSLQ----SYNIWLQGLVRHGKF 342

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
             AE +L++M+ KGI P   +Y  L++G+  +
Sbjct: 343 IEAETVLKQMIDKGIGPSIYSYNILMDGLCKL 374



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 164/410 (40%), Gaps = 99/410 (24%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------- 45
           MK  GV PD+ TYG  + G C  G+++ A  +L++M  N  +P A               
Sbjct: 387 MKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGR 446

Query: 46  --------------------VTYNTLIDGYCNKGNLEMAFSF------------------ 67
                               VT N ++DG C  G L+ A                     
Sbjct: 447 ISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNS 506

Query: 68  -----RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                 D +++   +P   TY+ L++ L    +  EA  +  EM  + + PDS+ YNI I
Sbjct: 507 YIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFI 566

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           + +C+ G    AF +  +M  KG   ++ TY SLI  L  +N++ E   L +    KG+ 
Sbjct: 567 HHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGIS 626

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR---------- 232
           P+I  +N  I   C  G +E A +LL EM +  + P+  ++  L+   C+          
Sbjct: 627 PNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEV 686

Query: 233 ------------------------QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
                                    G++ +A  LL+ +  RG       F      Y  L
Sbjct: 687 FETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRG-------FELGTFLYKDL 739

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +  LCK  E ++A  +L +M+ KG   D      +I+G+  +    E++N
Sbjct: 740 VVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANN 789



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 154/316 (48%), Gaps = 13/316 (4%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P  Y Y   +    +E R+E  S + + M   G+ P   T+N LI   C+   ++ A  
Sbjct: 109 KPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARE 168

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             DEM ++G  P   T+ +L+          +  ++L  M   G++P+ + YN +++ +C
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFC 228

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML---- 182
           R G    +  L ++M  +G+ P ++T+ S I  L K+ ++++A ++F +      L    
Sbjct: 229 REGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+ + +N ++ G C  G +E A +L + +          +YN  + G  R GK  EA  +
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETV 348

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L QM  +GI        P+  +YN L+ GLCK      A+ ++  M   G++PD  TY  
Sbjct: 349 LKQMIDKGI-------GPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGC 401

Query: 303 LIEGIASVDK--AAES 316
           L+ G  SV K  AA+S
Sbjct: 402 LLHGYCSVGKVDAAKS 417



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           +P +  Y  L+    ++ R+     L+++ +  G+ P+   FN LI   C +  ++ A  
Sbjct: 109 KPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARE 168

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L  EM      P+E T+  L+ G C+ G  ++   LL+ M+  G+ P+       ++ YN
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPN-------KVVYN 221

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            ++   C+    D +E+L+ +M  +G+ PD  T+ S I  +    K  ++S
Sbjct: 222 TIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDAS 272



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 89/182 (48%), Gaps = 11/182 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P+  TY + +  +C+ G++E+A+ +L++M +  + P   ++  LI  +C   +
Sbjct: 620 MREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPD 679

Query: 61  LEMAFSFRDEMV-----KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            +MA    +  V     K+G+      Y+L+ +ELL   ++++A ++L+ + ++G    +
Sbjct: 680 FDMAQEVFETAVSICGQKEGL------YSLMFNELLAAGQLLKATELLEAVLDRGFELGT 733

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
             Y  L+   C+    + A  +  +MI KG          +I  L K     EA+   E 
Sbjct: 734 FLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNFAEK 793

Query: 176 FL 177
            +
Sbjct: 794 MM 795


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 167/311 (53%), Gaps = 12/311 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P + TY S +SG+CK  R  EA  +LE+M  +G +P   TY TLI G+C     + A   
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILINGYC 126
            +++V +G  P   TY+ LI  L  E ++ EA D+   M + G  +P+++TYN LI+G+C
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G   +A +L + M   G  P ++TYT+L+    K  R+ +A  L      KG+ P++V
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR-LLDQ 245
            F +L+DG C    +  A  +L EM R    P   TYNT++ G CR  ++EEAR+ +L++
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEE 291

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M      P+ +SF       N +I+GLCK      A EL+ E   +   PD   Y ++I+
Sbjct: 292 MD---CPPNVVSF-------NIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVID 341

Query: 306 GIASVDKAAES 316
            +    K  E+
Sbjct: 342 VLCREKKVDEA 352



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 163/299 (54%), Gaps = 13/299 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD +TY + ++G CK  + ++A R+ EQ+   G  P  VTY+ LIDG C +G L+ A
Sbjct: 84  GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 143

Query: 65  FSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 M+K G  MP   TYN LI       KM EA ++L+ M E G  PD +TY  L+N
Sbjct: 144 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN 203

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+      A+ L ++M  KG+ P ++T+TSL+  L ++NR+ +A  +      K   P
Sbjct: 204 GFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 263

Query: 184 DIVMFNALIDGHCTNGNIERAFS-LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            +  +N ++DG+C    +E A   +L+EMD     P+ V++N ++ G C+  +  EA  L
Sbjct: 264 TVYTYNTILDGYCRVNQLEEARKFMLEEMD---CPPNVVSFNIMIRGLCKVNRSSEAMEL 320

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTY 300
           +++ +RR   PD +        Y  +I  LC+ ++ D A  + R+M+ + G  P+  TY
Sbjct: 321 VEEARRRRCNPDVV-------MYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITY 372



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 149/277 (53%), Gaps = 12/277 (4%)

Query: 42  VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           VPTAVTYN+LI G C       A+   +EMV  G +P   TY  LI      +K  +A  
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVL 160
           + +++  +G  PD +TY+ LI+G C+ G  K+A  L   MI  G   P  +TY SLI   
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            +  +M EA  L E     G  PD+V +  L++G C    ++ A+ LL +M R  + P+ 
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNV 230

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK-NQEGD 279
           VT+ +LM G CR+ ++ +A  +L +M+R+       S +PT  TYN ++ G C+ NQ  +
Sbjct: 231 VTFTSLMDGLCRENRLSDAVHILGEMRRK-------SCSPTVYTYNTILDGYCRVNQLEE 283

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             + +L EM      P+  ++  +I G+  V++++E+
Sbjct: 284 ARKFMLEEM---DCPPNVVSFNIMIRGLCKVNRSSEA 317



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 145/261 (55%), Gaps = 8/261 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKGNL 61
           +RG +PD  TY   + G+CKEGRL+EA  +  +M ++G  +P  VTYN+LI G+C  G +
Sbjct: 117 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 176

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A +  + M + G  P   TY  L++      ++ +A D+L +M  KG+ P+ +T+  L
Sbjct: 177 DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSL 236

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++G CR      A  +  EM  K   PT+ TY +++    + N++ EA +    F+ + M
Sbjct: 237 MDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARK----FMLEEM 292

Query: 182 --LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
              P++V FN +I G C       A  L++E  R + +PD V Y T++   CR+ KV+EA
Sbjct: 293 DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEA 352

Query: 240 RRLLDQM-KRRGIKPDHISFN 259
            R+  +M +  G  P+ I+++
Sbjct: 353 CRVYRKMLEEPGCLPNSITYS 373



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 3/227 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS    P++ TY S +SG C+ G+++EA  +LE+M E G  P  VTY TL++G+C    
Sbjct: 151 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 210

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A+   ++M ++G+ P   T+  L+  L  E ++ +A  +L EM  K   P   TYN 
Sbjct: 211 LDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 270

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYCR    ++A     E +     P ++++  +I  L K NR  EA +L E    + 
Sbjct: 271 ILDGYCRVNQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 328

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTL 226
             PD+VM+  +ID  C    ++ A  + ++M +     P+ +TY+T 
Sbjct: 329 CNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 162/303 (53%), Gaps = 17/303 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG   D  +Y + +SG C + +L+EA   L++M + GL P   TY+ LI G  N   +E 
Sbjct: 523 RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEE 582

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  F D+  + G++P   TY+++I       +  E  +   EM  K + P+++ YN LI 
Sbjct: 583 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 642

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            YCR G    A  L ++M HKGI P   TYTSLI  +S  +R+ EA  LFE    +G+ P
Sbjct: 643 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 702

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++  + ALIDG+   G + +   LL+EM    VHP+++TY  ++ G  R G V EA RLL
Sbjct: 703 NVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLL 762

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M+ +GI PD I       TY   I G  K  +G + E        KG   D+  Y ++
Sbjct: 763 NEMREKGIVPDSI-------TYKEFIYGYLK--QGGVLEAF------KG--SDEENYAAI 805

Query: 304 IEG 306
           IEG
Sbjct: 806 IEG 808



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 181/348 (52%), Gaps = 42/348 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD Y + + ++  CK G++EEA ++  +M+E G+ P  VT+NT+IDG    G  + 
Sbjct: 243 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 302

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F+++MV++G+ PT  TY++L+  L   +++ +A  +LKEM +KG  P+ I YN LI+
Sbjct: 303 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 362

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG--- 180
            +   G+  KA  + D M+ KG+  T  TY +LI    K  +   A++L +  L+ G   
Sbjct: 363 SFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNV 422

Query: 181 ----------MLPDIVMFNA----------------------LIDGHCTNGNIERAFSLL 208
                     +L   +MF++                      LI G C +G   +A  L 
Sbjct: 423 NQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELW 482

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            +        D  T N L+HG C  GK++EA R+  ++  RG   D       R++YN L
Sbjct: 483 FQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD-------RVSYNTL 535

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           I G C  ++ D A   L EMV +G+ PD+ TY  LI G+ +++K  E+
Sbjct: 536 ISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 583



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 161/380 (42%), Gaps = 63/380 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-------------------- 40
           M S+G+   S TY + + G CK G+ + A R+L++M   G                    
Sbjct: 380 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 439

Query: 41  ---------------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                          + P      TLI G C  G    A     + + +G +    T N 
Sbjct: 440 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 499

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+H L    K+ EA  + KE+  +G V D ++YN LI+G C      +AF   DEM+ +G
Sbjct: 500 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 559

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P   TY+ LI  L   N++ EA Q +++    GMLPD+  ++ +IDG C     E   
Sbjct: 560 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQ 619

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
               EM    V P+ V YN L+   CR G++  A  L + MK +GI P+  ++       
Sbjct: 620 EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 679

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P    Y ALI G  K  +    E LLREM SK + P+ 
Sbjct: 680 SIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK 739

Query: 298 NTYFSLIEGIASVDKAAESS 317
            TY  +I G A      E+S
Sbjct: 740 ITYTVMIGGYARDGNVTEAS 759



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 130/245 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD+YTY   + G+    ++EEA +  +  K NG++P   TY+ +IDG C    
Sbjct: 555 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 614

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E    F DEM+ + + P    YN LI       ++  A ++ ++M  KGI P+S TY  
Sbjct: 615 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 674

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G       ++A  L +EM  +G++P +  YT+LI    K  +M++ + L     +K 
Sbjct: 675 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 734

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  +I G+  +GN+  A  LL EM    + PD +TY   ++G  +QG V EA 
Sbjct: 735 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 794

Query: 241 RLLDQ 245
           +  D+
Sbjct: 795 KGSDE 799



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 140/281 (49%), Gaps = 8/281 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           +   G+ P+  T N L+         +      D +V +G+ P    +   I+      K
Sbjct: 206 LANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGK 264

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           + EA  +  +M E G+ P+ +T+N +I+G   CG   +AF   ++M+ +G++PT++TY+ 
Sbjct: 265 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 324

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           L+  L++  R+ +A  + +    KG  P+++++N LID     G++ +A  +   M    
Sbjct: 325 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 384

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           +     TYNTL+ G C+ G+ + A RLL +M         I FN  + ++ ++I  LC +
Sbjct: 385 LSLTSSTYNTLIKGYCKNGQADNAERLLKEML-------SIGFNVNQGSFTSVICLLCSH 437

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              D A   + EM+ + ++P      +LI G+    K +++
Sbjct: 438 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 478



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 29/234 (12%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A D+   +  KG+ P   T NIL+    R    +K     D ++ KG+ P +  +T+ I 
Sbjct: 199 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAIN 257

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
              K  ++ EA +LF      G+ P++V FN +IDG    G  + AF   ++M    + P
Sbjct: 258 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 317

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP------------------ 260
             +TY+ L+ G  R  ++ +A  +L +M ++G  P+ I +N                   
Sbjct: 318 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 377

Query: 261 ----------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                     T  TYN LI+G CKN + D AE LL+EM+S G   +  ++ S+I
Sbjct: 378 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 431


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 162/303 (53%), Gaps = 17/303 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG   D  +Y + +SG C + +L+EA   L++M + GL P   TY+ LI G  N   +E 
Sbjct: 547 RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEE 606

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  F D+  + G++P   TY+++I       +  E  +   EM  K + P+++ YN LI 
Sbjct: 607 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 666

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            YCR G    A  L ++M HKGI P   TYTSLI  +S  +R+ EA  LFE    +G+ P
Sbjct: 667 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 726

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++  + ALIDG+   G + +   LL+EM    VHP+++TY  ++ G  R G V EA RLL
Sbjct: 727 NVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLL 786

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M+ +GI PD I       TY   I G  K  +G + E        KG   D+  Y ++
Sbjct: 787 NEMREKGIVPDSI-------TYKEFIYGYLK--QGGVLEAF------KG--SDEENYAAI 829

Query: 304 IEG 306
           IEG
Sbjct: 830 IEG 832



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 181/348 (52%), Gaps = 42/348 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD Y + + ++  CK G++EEA ++  +M+E G+ P  VT+NT+IDG    G  + 
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 326

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F+++MV++G+ PT  TY++L+  L   +++ +A  +LKEM +KG  P+ I YN LI+
Sbjct: 327 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 386

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG--- 180
            +   G+  KA  + D M+ KG+  T  TY +LI    K  +   A++L +  L+ G   
Sbjct: 387 SFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNV 446

Query: 181 ----------MLPDIVMFNA----------------------LIDGHCTNGNIERAFSLL 208
                     +L   +MF++                      LI G C +G   +A  L 
Sbjct: 447 NQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELW 506

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            +        D  T N L+HG C  GK++EA R+  ++  RG   D       R++YN L
Sbjct: 507 FQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD-------RVSYNTL 559

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           I G C  ++ D A   L EMV +G+ PD+ TY  LI G+ +++K  E+
Sbjct: 560 ISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 607



 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 161/380 (42%), Gaps = 63/380 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-------------------- 40
           M S+G+   S TY + + G CK G+ + A R+L++M   G                    
Sbjct: 404 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 463

Query: 41  ---------------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                          + P      TLI G C  G    A     + + +G +    T N 
Sbjct: 464 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 523

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+H L    K+ EA  + KE+  +G V D ++YN LI+G C      +AF   DEM+ +G
Sbjct: 524 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 583

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P   TY+ LI  L   N++ EA Q +++    GMLPD+  ++ +IDG C     E   
Sbjct: 584 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQ 643

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
               EM    V P+ V YN L+   CR G++  A  L + MK +GI P+  ++       
Sbjct: 644 EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 703

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P    Y ALI G  K  +    E LLREM SK + P+ 
Sbjct: 704 SIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK 763

Query: 298 NTYFSLIEGIASVDKAAESS 317
            TY  +I G A      E+S
Sbjct: 764 ITYTVMIGGYARDGNVTEAS 783



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 130/245 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD+YTY   + G+    ++EEA +  +  K NG++P   TY+ +IDG C    
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 638

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E    F DEM+ + + P    YN LI       ++  A ++ ++M  KGI P+S TY  
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 698

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G       ++A  L +EM  +G++P +  YT+LI    K  +M++ + L     +K 
Sbjct: 699 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 758

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  +I G+  +GN+  A  LL EM    + PD +TY   ++G  +QG V EA 
Sbjct: 759 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 818

Query: 241 RLLDQ 245
           +  D+
Sbjct: 819 KGSDE 823



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 140/281 (49%), Gaps = 8/281 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           +   G+ P+  T N L+         +      D +V +G+ P    +   I+      K
Sbjct: 230 LANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGK 288

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           + EA  +  +M E G+ P+ +T+N +I+G   CG   +AF   ++M+ +G++PT++TY+ 
Sbjct: 289 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 348

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           L+  L++  R+ +A  + +    KG  P+++++N LID     G++ +A  +   M    
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 408

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           +     TYNTL+ G C+ G+ + A RLL +M         I FN  + ++ ++I  LC +
Sbjct: 409 LSLTSSTYNTLIKGYCKNGQADNAERLLKEML-------SIGFNVNQGSFTSVICLLCSH 461

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              D A   + EM+ + ++P      +LI G+    K +++
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 502



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 29/234 (12%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A D+   +  KG+ P   T NIL+    R    +K     D ++ KG+ P +  +T+ I 
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAIN 281

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
              K  ++ EA +LF      G+ P++V FN +IDG    G  + AF   ++M    + P
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 341

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP------------------ 260
             +TY+ L+ G  R  ++ +A  +L +M ++G  P+ I +N                   
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 401

Query: 261 ----------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                     T  TYN LI+G CKN + D AE LL+EM+S G   +  ++ S+I
Sbjct: 402 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 455


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 174/370 (47%), Gaps = 64/370 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+ PD+ TY S + G  K GRL++     E+MK+    P  +TYN LI+ +C  G 
Sbjct: 156 MKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 215

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +   F  EM   G+ P   +Y+ L+     E  M +A     +M   G+VP+  TY  
Sbjct: 216 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 275

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ GN   AF L +EM+  G++  ++TYT+LI  L    RM EA++LF      G
Sbjct: 276 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 335

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++  +NALI G     N++RA  LL E+    + PD + Y T + G C   K+E A+
Sbjct: 336 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAK 395

Query: 241 RLLDQMKRRGIKPDHISF-----------NPTR-----------------LTYNALIQGL 272
            ++++MK  GIK + + +           NPT                  +T+  LI GL
Sbjct: 396 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 455

Query: 273 CKNQ------------------------------------EGDLAEELLREMVSKGITPD 296
           CKN+                                    + + A  L  +MV KG+ PD
Sbjct: 456 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 515

Query: 297 DNTYFSLIEG 306
              Y SL++G
Sbjct: 516 RTAYTSLMDG 525



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V P + +    +    K G+ ++  R  + M   G  PT  TYN +ID  C +G+
Sbjct: 86  MKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD 145

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM  +G++P   TYN +I       ++ +     +EM +    PD ITYN 
Sbjct: 146 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNA 205

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C+ G        + EM   G++P +++Y++L+    K+  M +A + + +    G
Sbjct: 206 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 265

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   + +LID +C  GN+  AF L  EM ++ V  + VTY  L+ G C   +++EA 
Sbjct: 266 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 325

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ P+  S       YNALI G  K +  D A ELL E+  +GI PD   Y
Sbjct: 326 ELFGKMDTAGVIPNLAS-------YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLY 378

Query: 301 FSLIEGIASVDK 312
            + I G+ S++K
Sbjct: 379 GTFIWGLCSLEK 390



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 161/316 (50%), Gaps = 13/316 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+ +  TY + + G+C   R++EA  +  +M   G++P   +YN LI G+    N++ A
Sbjct: 300 GVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRA 359

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +E+  +GI P    Y   I  L    K+  A  ++ EM E GI  +S+ Y  L++ 
Sbjct: 360 LELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA 419

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK--GML 182
           Y + GN  +   L DEM    I+ T++T+  LI  L K N+++     + N ++   G+ 
Sbjct: 420 YFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK-NKLVSKAVDYFNRISNDFGLQ 478

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            +  +F A+IDG C +  +E A +L ++M +  + PD   Y +LM G  +QG V EA  L
Sbjct: 479 ANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALAL 538

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M   G+K D        L Y +L+ GL    +   A   L EM+ +GI PD+    S
Sbjct: 539 RDKMAEIGMKLD-------LLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCIS 591

Query: 303 LIEG---IASVDKAAE 315
           +++    +  +D+A E
Sbjct: 592 VLKKHYELGCIDEAVE 607



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 159/314 (50%), Gaps = 10/314 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    + +  S +   G LEEA +   +MK   + P   + N L+  +   G  +    F
Sbjct: 58  PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 117

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+  G  PT  TYN++I  +  E  +  A  + +EM  +G+VPD++TYN +I+G+ +
Sbjct: 118 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 177

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G         +EM     +P ++TY +LI    K  ++    + +      G+ P++V 
Sbjct: 178 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 237

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ L+D  C  G +++A     +M R+ + P+E TY +L+   C+ G + +A RL ++M 
Sbjct: 238 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 297

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G++ + +       TY ALI GLC  +    AEEL  +M + G+ P+  +Y +LI G 
Sbjct: 298 QVGVEWNVV-------TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 350

Query: 308 A---SVDKAAESSN 318
               ++D+A E  N
Sbjct: 351 VKAKNMDRALELLN 364



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 129/245 (52%), Gaps = 5/245 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K RG++PD   YG+F+ G+C   ++E A  ++ +MKE G+   ++ Y TL+D Y   GN
Sbjct: 366 LKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 425

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG-EKGIVPDSITYN 119
                   DEM +  I  T  T+ +LI  L   + + +A D    +  + G+  ++  + 
Sbjct: 426 PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFT 485

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+    + A +L ++M+ KG+ P    YTSL+    KQ  ++EA  L +     
Sbjct: 486 AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEI 545

Query: 180 GMLPDIVMFNALIDG--HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           GM  D++ + +L+ G  HC    +++A S L+EM    +HPDEV   +++      G ++
Sbjct: 546 GMKLDLLAYTSLVWGLSHCNQ--LQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCID 603

Query: 238 EARRL 242
           EA  L
Sbjct: 604 EAVEL 608


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 178/354 (50%), Gaps = 45/354 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M +R +QP+  +Y   + G+CK  R  EA  ++  M   G    P  VTY+TL+ GYC  
Sbjct: 36  MAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKA 95

Query: 59  GNLEMAFSFRDE-----------------------------------MVKQGIMPTASTY 83
           G +E +     E                                   M++ G  PT  T+
Sbjct: 96  GKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITF 155

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N LI     E+ +  AD +L++M   G+  D +TYN L++G C+ G  ++A  L + M  
Sbjct: 156 NTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKA 215

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P ++ Y+S ++ L K  ++++A Q+ E        P++V +N ++DG C +G I+ 
Sbjct: 216 SGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDT 275

Query: 204 AFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           A  ++++M        + V Y+T++ G C+ G+ +EAR +++ M R G +PD +      
Sbjct: 276 ALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV------ 329

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY++L+ GLCK  + + A E +REM  +G  P+  TY SL+ G+ S  + AE+
Sbjct: 330 -TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEA 382



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 167/313 (53%), Gaps = 3/313 (0%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   T+ + +SG C+E  LE A  +L++M  +G+    VTYNTL+DG C  G L+ A
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               + M   G  P    Y+  ++ L    K+++A  +L++M +    P+ +TYN +++G
Sbjct: 207 EQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDG 266

Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            C+ G    A  + ++M    G    ++ Y++++  L K  R  EA  + E     G  P
Sbjct: 267 LCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRP 326

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +++L++G C  G IE A   ++EM      P+ VTY +L+HG C  G++ EA R++
Sbjct: 327 DVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMV 386

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M             P+  TYNALI GLCK    D A +  + M S+G  PD  +Y ++
Sbjct: 387 EEMSS--GGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444

Query: 304 IEGIASVDKAAES 316
           +EG+A   +A ++
Sbjct: 445 VEGLARSGRALQA 457



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 134/253 (52%), Gaps = 6/253 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD   Y SFV G+CK G++ +A ++LEQM+++   P  VTYNT++DG C  G 
Sbjct: 213 MKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGK 272

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           ++ A    ++M    G       Y+ ++  L    +  EA  +++ M   G  PD +TY+
Sbjct: 273 IDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYS 332

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NG C+ G  ++A     EM  +G +P  +TY SL+  L    R+ EA+++ E   + 
Sbjct: 333 SLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSG 392

Query: 180 GML-----PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           G       P +  +NALI G C  G I+ A    + M      PD V+Y+T++ G  R G
Sbjct: 393 GGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSG 452

Query: 235 KVEEARRLLDQMK 247
           +  +A  +L +++
Sbjct: 453 RALQAEMILSEVR 465


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 165/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 120 GYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 179

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E K+ +A+++  EM  KG+VP+S+T+  LI+G
Sbjct: 180 FRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDG 239

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 240 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPD 299

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C +G+++ AF   K M +     D+V Y  L+ G CR+G   +A ++L 
Sbjct: 300 KITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLR 359

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 360 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412

Query: 305 EG 306
            G
Sbjct: 413 NG 414



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 175/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
            +++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 45  FETKGTQRSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 104

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 105 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYN 164

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K++++ +A++LF+  L K
Sbjct: 165 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVK 224

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 225 GLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 284

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
             L+D+M  +G+KPD I++                           TRL    Y ALI G
Sbjct: 285 HHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISG 344

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ PD  TY  +I
Sbjct: 345 LCREGXSVDAEKMLREMLSVGLKPDARTYTMII 377



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 135/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP +VT+ TLIDG+C  G 
Sbjct: 186 MLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 246 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTT 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI +  +   + YT+LI  L ++   ++A+++    L+ G
Sbjct: 306 LIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVG 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 366 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 96/177 (54%), Gaps = 7/177 (3%)

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           K  +  ++E++  G   ++  +  L+    K   +  A  +F+     G+ P +V +N L
Sbjct: 107 KLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTL 166

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G+   G+++  F L   M    V PD  TY+ L++G C++ K+++A  L D+M  +G+
Sbjct: 167 MNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGL 226

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            P+ ++F         LI G CKN   DLA E+ ++M+S+ ++PD  TY +LI G+ 
Sbjct: 227 VPNSVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 276



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 128 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 180

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
            L   M++ G+ PD  TY  LI G+   + +D A E
Sbjct: 181 RLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANE 216


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 166/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G++P+  TY +F+   CKEG L+EA +    M+   L P   TY +LID  C  GN
Sbjct: 351 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +E+++ GI     TY  L+  L  E +M EA+++ + M   G+ P+  TY  
Sbjct: 411 LAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTA 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ +    + A  +  EM  K I+P +L Y ++++ L  ++R+ EA  L       G
Sbjct: 471 LVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG 530

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++  L+D +  +G    A +LL+EM  + +   EVTY  L+ G C+ G V+EA 
Sbjct: 531 INTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAM 590

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M   G++P+          Y AL+ GLCKN   ++A++L  EM+ KG+ PD   Y
Sbjct: 591 HHFGRMSEIGLQPN-------VAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAY 643

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 644 TALIDG 649



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  PD  TY S + G  K G L+E   + EQMK+    P  +TYN LI+ +C    
Sbjct: 281 MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFER 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF F  EM   G+ P   TY+  I     E  + EA     +M    + P+  TY  
Sbjct: 341 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTS 400

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ GN  +A  L +E++  GI+  ++TYT+L+  L ++ RM EA+++F   L  G
Sbjct: 401 LIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 460

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   + AL+ G      +E A  +LKEM    + PD + Y T++ G C + ++EEA+
Sbjct: 461 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 520

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ ++K  GI       N   + Y  L+    K+ +   A  LL EM+  G+   + TY
Sbjct: 521 LLIGEIKESGI-------NTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTY 573

Query: 301 FSLIEGIA 308
            +LI+G+ 
Sbjct: 574 CALIDGLC 581



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 167/349 (47%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P+ +TY S +   CK G L EA +++E++ + G+    VTY  L+DG C +G 
Sbjct: 386 MRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGR 445

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M+  G+ P   TY  L+H  +  ++M  A D+LKEM EK I PD + Y  
Sbjct: 446 MKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGT 505

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C     ++A  L  E+   GI    + YT+L+    K  +  EA  L E  L  G
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++   V + ALIDG C +G ++ A      M  + + P+   Y  L+ G C+    E A+
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAK 625

Query: 241 RLLDQMKRRGIKPDHISFNPT------------------RL----------TYNALIQGL 272
           +L D+M  +G+ PD I++                     R+           Y ALI GL
Sbjct: 626 KLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGL 685

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE---GIASVDKAAESSN 318
             + +   A  LL EM+ KG+ PD+  Y  LI+    +  VD+A E  N
Sbjct: 686 SHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQN 734



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 161/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G++   +TY   +  +CKEG LE A  +  QMKE G  P  VTYN+LIDG+   G 
Sbjct: 246 MGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGL 305

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+      ++M      P   TYN LI+      +M +A + L EM   G+ P+ +TY+ 
Sbjct: 306 LDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYST 365

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I+ +C+ G  ++A     +M    + P   TYTSLI    K   + EA +L E  L  G
Sbjct: 366 FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAG 425

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  ++V + AL+DG C  G ++ A  + + M    V P++ TY  L+HG  +  ++E A+
Sbjct: 426 IKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAK 485

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L +MK + IKPD        L Y  ++ GLC     + A+ L+ E+   GI  +   Y
Sbjct: 486 DILKEMKEKCIKPD-------LLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIY 538

Query: 301 FSLIEGIASVDKAAES 316
            +L++      +A E+
Sbjct: 539 TTLMDAYFKSGQATEA 554



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 153/300 (51%), Gaps = 7/300 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    + +  S + + G LEEAS    +M++  + P   + N L+      G  +++  F
Sbjct: 183 PGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKF 242

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M   GI  +  TYN++I  L  E  +  A  +  +M E G  PD +TYN LI+G+ +
Sbjct: 243 FKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGK 302

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +   + ++M      P ++TY +LI    K  RM +A +      A G+ P++V 
Sbjct: 303 LGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVT 362

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++  ID  C  G ++ A     +M R+ + P+E TY +L+   C+ G + EA +L++++ 
Sbjct: 363 YSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEIL 422

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + GIK + +       TY AL+ GLC+      AEE+ R M++ G+ P+  TY +L+ G 
Sbjct: 423 QAGIKLNVV-------TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGF 475



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 162/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   V P   +  + +  + K GR + + +  + M   G+  +  TYN +ID  C +G+
Sbjct: 211 MRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGD 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LEMA S   +M + G  P   TYN LI        + E   + ++M +    PD ITYN 
Sbjct: 271 LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C+     KAF    EM   G++P ++TY++ I    K+  + EA + F +     
Sbjct: 331 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   + +LID +C  GN+  A  L++E+ +  +  + VTY  L+ G C +G+++EA 
Sbjct: 391 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAE 450

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M   G+ P+       + TY AL+ G  K +E + A+++L+EM  K I PD   Y
Sbjct: 451 EVFRAMLNAGVAPN-------QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 503

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+ +  +  E+
Sbjct: 504 GTILWGLCNESRLEEA 519



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+  TY + V G  K   +E A  +L++MKE  + P  + Y T++ G CN+  
Sbjct: 456 MLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESR 515

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A     E+ + GI   A  Y  L+       +  EA  +L+EM + G++   +TY  
Sbjct: 516 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCA 575

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  ++A      M   G+QP +  YT+L+  L K N    A +LF+  L KG
Sbjct: 576 LIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKG 635

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+PD + + ALIDG+  +GN++ A +L   M  + +  D   Y  L+ G    G+V++AR
Sbjct: 636 MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKAR 695

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            LLD+M  +G+ PD +        Y  LI+      + D A EL  EM  +G+
Sbjct: 696 NLLDEMIGKGVLPDEV-------VYMCLIKKYYALGKVDEALELQNEMAKRGM 741



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 144/318 (45%), Gaps = 32/318 (10%)

Query: 20  MCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDG-YCNKGNLEMAFSFRDEMVKQGIM 77
           +C++ RL  A R  E  K   G   T+  Y  L+   +C +   +     ++ +  + ++
Sbjct: 108 LCQDARL--ALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVL 165

Query: 78  PTASTYNLL----------------IHELLMERKMVE-ADDMLKEMGEKGIVPDSITYNI 120
           P+   ++LL                +   L+E  M+E A +   +M +  + P   + N 
Sbjct: 166 PSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNA 225

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++   + G    +     +M   GI+ ++ TY  +I  L K+  +  A  LF      G
Sbjct: 226 LLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAG 285

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N+LIDGH   G ++    + ++M      PD +TYN L++  C+  ++ +A 
Sbjct: 286 FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAF 345

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
             L +MK  G+KP+ +       TY+  I   CK  EG L E  +   +M    +TP++ 
Sbjct: 346 EFLHEMKANGLKPNVV-------TYSTFIDAFCK--EGMLQEAIKFFVDMRRVALTPNEF 396

Query: 299 TYFSLIEGIASVDKAAES 316
           TY SLI+        AE+
Sbjct: 397 TYTSLIDANCKAGNLAEA 414



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 45/79 (56%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ D + Y + + G+   G++++A  +L++M   G++P  V Y  LI  Y   G ++ A
Sbjct: 670 GMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEA 729

Query: 65  FSFRDEMVKQGIMPTASTY 83
              ++EM K+G++   S +
Sbjct: 730 LELQNEMAKRGMITGLSDH 748


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 167/319 (52%), Gaps = 14/319 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD +T  SF+ G C+   ++ A R+ E+M         V+YN LI G C  G 
Sbjct: 218 MIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGR 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYN 119
           ++ A S    M      P   TY  LI  L   RK V +A  +L EM E+ +VPD ITYN
Sbjct: 274 IDEAVSLFVRMKDDCCYPNVYTYTALIKGLC--RKNVHKAMGLLDEMLERNLVPDLITYN 331

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI G CR G+   A+ L   M  +G+ P   TY   I  L K NR+ EA +LF++   +
Sbjct: 332 SLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEE 391

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  +++M++ LIDG+C  G ++ A  L ++M      P+  T+N L+HG C  G ++EA
Sbjct: 392 GVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEA 451

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L DQM + G+KP       T  T+N LI  + K  + D A + L++M+S G  P   T
Sbjct: 452 LSLFDQMVKMGLKP-------TVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVART 504

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y + IE   S  K  E+ +
Sbjct: 505 YNAFIEVYCSAGKVQEAED 523



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 169/361 (46%), Gaps = 62/361 (17%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP---------------------- 43
           V  D YT+   ++  CK G ++EA + + +M + GL P                      
Sbjct: 188 VSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAF 247

Query: 44  ---------TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
                      V+YN LI G C  G ++ A S    M      P   TY  LI  L   R
Sbjct: 248 RVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLC--R 305

Query: 95  KMV-EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           K V +A  +L EM E+ +VPD ITYN LI G CR G+   A+ L   M  +G+ P   TY
Sbjct: 306 KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTY 365

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
              I  L K NR+ EA +LF++   +G+  +++M++ LIDG+C  G ++ A  L ++M  
Sbjct: 366 GCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLS 425

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------- 259
               P+  T+N L+HG C  G ++EA  L DQM + G+KP   +FN              
Sbjct: 426 KNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDD 485

Query: 260 --------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                         P   TYNA I+  C   +   AE+++ +M  +G+ PDD TY SLI+
Sbjct: 486 AHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIK 545

Query: 306 G 306
            
Sbjct: 546 A 546



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 158/333 (47%), Gaps = 22/333 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  TY S ++G C+ G L+ A R+L  MKE GLVP   TY   ID  C    
Sbjct: 318 MLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNR 377

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D + ++G+      Y++LI       K+ EA  + ++M  K   P++ T+N 
Sbjct: 378 VEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNA 437

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  GN K+A SL D+M+  G++PT+ T+  LI  + KQ    +A +  +  ++ G
Sbjct: 438 LIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSG 497

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P    +NA I+ +C+ G ++ A  ++ +M    V PD+ TY +L+    + G    A 
Sbjct: 498 EKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAF 557

Query: 241 RLLDQMKRRGIKPDHISF--------------------NPTRLTYNALIQG--LCKNQEG 278
            +L  M     +P H +F                        ++    + G  + K  E 
Sbjct: 558 DVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEF 617

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           D+  EL  EM   G TPD   Y  LI GI  V+
Sbjct: 618 DIVIELFEEMEKHGCTPDSKCYEKLISGICKVE 650



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 160/371 (43%), Gaps = 71/371 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV------------------ 42
           MK RG+ PD  TYG F+  +CK  R+EEA R+ + + E G+                   
Sbjct: 353 MKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGK 412

Query: 43  -----------------PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                            P A T+N LI G C+ GNL+ A S  D+MVK G+ PT  T+N+
Sbjct: 413 VDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNI 472

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  +L +    +A   L++M   G  P + TYN  I  YC  G  ++A  +  +M  +G
Sbjct: 473 LIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG 532

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID------------ 193
           + P   TYTSLI    K      A  + ++       P    F +LI             
Sbjct: 533 VPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKS 592

Query: 194 -----------GHCTNGNIER------AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
                      G     N+ +         L +EM++    PD   Y  L+ G C+   +
Sbjct: 593 GETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENL 652

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             A +LLDQM++ GI       +P+ + +NA+I   CK Q+   A  ++ +M+  G +P 
Sbjct: 653 GIALKLLDQMQKEGI-------SPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQ 705

Query: 297 DNTYFSLIEGI 307
                +LI G+
Sbjct: 706 LEHCKTLICGL 716



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 139/301 (46%), Gaps = 36/301 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +P + TY +F+   C  G+++EA  M+ QMKE G+ P   TY +LI  Y   G 
Sbjct: 493 MMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGL 552

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER-------------------------- 94
              AF     M      P+  T+  LI +L  +R                          
Sbjct: 553 TYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMW 612

Query: 95  KMVEAD---DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
           KM+E D   ++ +EM + G  PDS  Y  LI+G C+  N   A  L D+M  +GI P+ +
Sbjct: 613 KMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEM 672

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            + ++I    K  +  EA  + E+ +  G  P +     LI G    G  ER  S+ K++
Sbjct: 673 VFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKL 732

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                + DE+ +  L+ G  +QG VEE  +L ++M++ G      +F+P   TY+ L Q 
Sbjct: 733 RGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG-----CNFSPR--TYSILTQK 785

Query: 272 L 272
           L
Sbjct: 786 L 786



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 23/301 (7%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
           FVS +C++   ++ +++           +   YN L+      G ++       EM+++ 
Sbjct: 139 FVSDICRKMSKDDITKL-----------SLKCYNELLTLLARFGLVDEMNQLYTEMLEEF 187

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           +     T+NL+I+       + EA   + +M + G+ PD  T    I GYCR  +   AF
Sbjct: 188 VSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAF 247

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            + +EM ++      ++Y  LI  L +  R+ EA  LF         P++  + ALI G 
Sbjct: 248 RVFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGL 303

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C   N+ +A  LL EM    + PD +TYN+L+ G+CR G ++ A RLL  MK RG+ PD 
Sbjct: 304 CRK-NVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPD- 361

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
                 + TY   I  LCK+   + A  L   +  +G++ +   Y  LI+G   V K  E
Sbjct: 362 ------QRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDE 415

Query: 316 S 316
           +
Sbjct: 416 A 416


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG++PD +TY + + GMCKEG ++ A  M+  ++  G  P  ++YN L+    N+G 
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGK 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       +M  +   P   TY++LI  L  + K+ EA ++LK M EKG+ PD+ +Y+ 
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR G    A    + MI  G  P ++ Y +++  L K  +  +A ++F      G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +N +     ++G+  RA  ++ EM    + PDE+TYN+++   CR+G V+EA 
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M+          F+P+ +TYN ++ G CK    + A  +L  MV  G  P++ TY
Sbjct: 494 ELLVDMR-------SCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546

Query: 301 FSLIEGIASVDKAAES 316
             LIEGI      AE+
Sbjct: 547 TVLIEGIGFAGYRAEA 562



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 167/303 (55%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QPD + Y + ++G CK  R+++A+R+L++M+     P  VTYN +I   C++G L++A  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             ++++     PT  TY +LI   ++E  + EA  ++ EM  +G+ PD  TYN +I G C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +AF +   +  KG +P +++Y  L+  L  Q +  E ++L     ++   P++V
Sbjct: 275 KEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LI   C +G IE A +LLK M    + PD  +Y+ L+   CR+G+++ A   L+ M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD ++       YN ++  LCKN + D A E+  ++   G +P+ ++Y ++   
Sbjct: 395 ISDGCLPDIVN-------YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 447

Query: 307 IAS 309
           + S
Sbjct: 448 LWS 450



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 8/288 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G   E+  +LE M   G  P  +    LI G+    N+  A    + + K G  P  
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
             YN LI+      ++ +A  +L  M  K   PD++TYNI+I   C  G    A  + ++
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           ++    QPT++TYT LI     +  + EA +L +  L++G+ PD+  +N +I G C  G 
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           ++RAF +++ ++     PD ++YN L+     QGK EE  +L+ +M      P+ +    
Sbjct: 279 VDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV---- 334

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
              TY+ LI  LC++ + + A  LL+ M  KG+TPD  +Y  LI    
Sbjct: 335 ---TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC 379



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 130/248 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S    P+  TY   ++ +C++G++EEA  +L+ MKE GL P A +Y+ LI  +C +G 
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A  F + M+  G +P    YN ++  L    K  +A ++  ++GE G  P+S +YN 
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           + +     G+  +A  +  EM+  GI P  +TY S+I  L ++  + EA +L  +  +  
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N ++ G C    IE A ++L+ M      P+E TY  L+ G    G   EA 
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563

Query: 241 RLLDQMKR 248
            L + + R
Sbjct: 564 ELANDLVR 571



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 109/214 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ PD+Y+Y   ++  C+EGRL+ A   LE M  +G +P  V YNT++   C  G 
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     ++ + G  P +S+YN +   L      + A  M+ EM   GI PD ITYN 
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  CR G   +AF L  +M      P+++TY  ++    K +R+ +A  + E+ +  G
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
             P+   +  LI+G    G    A  L  ++ R+
Sbjct: 539 CRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 8/219 (3%)

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
           +E+  +L+ M  KG  PD I    LI G+    N  KA  +  E++ K  QP +  Y +L
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNAL 164

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I    K NR+ +A ++ +   +K   PD V +N +I   C+ G ++ A  +L ++     
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P  +TY  L+     +G V+EA +L+D+M  RG+KPD         TYN +I+G+CK  
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM-------FTYNTIIRGMCKEG 277

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
             D A E++R +  KG  PD  +Y  L+  + +  K  E
Sbjct: 278 MVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEE 316



 Score = 54.3 bits (129), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C +GN   +  LL+ M R   +PD +    L+ G      + +A R+++ +++ G     
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG----- 154

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               P    YNALI G CK    D A  +L  M SK  +PD  TY  +I  + S  K
Sbjct: 155 ---QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 162/303 (53%), Gaps = 17/303 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG   D  +Y + +SG C + +L+EA   L++M + GL P   TY+ LI G  N   +E 
Sbjct: 534 RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEE 593

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  F D+  + G++P   TY+++I       +  E  +   EM  K + P+++ YN LI 
Sbjct: 594 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 653

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            YCR G    A  L ++M HKGI P   TYTSLI  +S  +R+ EA  LFE    +G+ P
Sbjct: 654 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 713

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++  + ALIDG+   G + +   LL+EM    VHP+++TY  ++ G  R G V EA RLL
Sbjct: 714 NVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLL 773

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M+ +GI PD I       TY   I G  K  +G + E        KG   D+  Y ++
Sbjct: 774 NEMREKGIVPDSI-------TYKEFIYGYLK--QGGVLEAF------KG--SDEENYAAI 816

Query: 304 IEG 306
           IEG
Sbjct: 817 IEG 819



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 181/348 (52%), Gaps = 42/348 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV PD Y + + ++  CK G++EEA ++  +M+E G+ P  VT+NT+IDG    G  + 
Sbjct: 254 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 313

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F+++MV++G+ PT  TY++L+  L   +++ +A  +LKEM +KG  P+ I YN LI+
Sbjct: 314 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 373

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG--- 180
            +   G+  KA  + D M+ KG+  T  TY +LI    K  +   A++L +  L+ G   
Sbjct: 374 SFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNV 433

Query: 181 ----------MLPDIVMFNA----------------------LIDGHCTNGNIERAFSLL 208
                     +L   +MF++                      LI G C +G   +A  L 
Sbjct: 434 NQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELW 493

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            +        D  T N L+HG C  GK++EA R+  ++  RG   D       R++YN L
Sbjct: 494 FQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD-------RVSYNTL 546

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           I G C  ++ D A   L EMV +G+ PD+ TY  LI G+ +++K  E+
Sbjct: 547 ISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 594



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 161/380 (42%), Gaps = 63/380 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-------------------- 40
           M S+G+   S TY + + G CK G+ + A R+L++M   G                    
Sbjct: 391 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 450

Query: 41  ---------------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                          + P      TLI G C  G    A     + + +G +    T N 
Sbjct: 451 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 510

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+H L    K+ EA  + KE+  +G V D ++YN LI+G C      +AF   DEM+ +G
Sbjct: 511 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 570

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P   TY+ LI  L   N++ EA Q +++    GMLPD+  ++ +IDG C     E   
Sbjct: 571 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQ 630

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
               EM    V P+ V YN L+   CR G++  A  L + MK +GI P+  ++       
Sbjct: 631 EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 690

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P    Y ALI G  K  +    E LLREM SK + P+ 
Sbjct: 691 SIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK 750

Query: 298 NTYFSLIEGIASVDKAAESS 317
            TY  +I G A      E+S
Sbjct: 751 ITYTVMIGGYARDGNVTEAS 770



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 130/245 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD+YTY   + G+    ++EEA +  +  K NG++P   TY+ +IDG C    
Sbjct: 566 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 625

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E    F DEM+ + + P    YN LI       ++  A ++ ++M  KGI P+S TY  
Sbjct: 626 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 685

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G       ++A  L +EM  +G++P +  YT+LI    K  +M++ + L     +K 
Sbjct: 686 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 745

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ + +  +I G+  +GN+  A  LL EM    + PD +TY   ++G  +QG V EA 
Sbjct: 746 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 805

Query: 241 RLLDQ 245
           +  D+
Sbjct: 806 KGSDE 810



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 140/281 (49%), Gaps = 8/281 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           +   G+ P+  T N L+         +      D +V +G+ P    +   I+      K
Sbjct: 217 LANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGK 275

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           + EA  +  +M E G+ P+ +T+N +I+G   CG   +AF   ++M+ +G++PT++TY+ 
Sbjct: 276 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 335

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           L+  L++  R+ +A  + +    KG  P+++++N LID     G++ +A  +   M    
Sbjct: 336 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 395

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           +     TYNTL+ G C+ G+ + A RLL +M         I FN  + ++ ++I  LC +
Sbjct: 396 LSLTSSTYNTLIKGYCKNGQADNAERLLKEML-------SIGFNVNQGSFTSVICLLCSH 448

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              D A   + EM+ + ++P      +LI G+    K +++
Sbjct: 449 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 489



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 29/234 (12%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A D+   +  KG+ P   T NIL+    R    +K     D ++ KG+ P +  +T+ I 
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAIN 268

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
              K  ++ EA +LF      G+ P++V FN +IDG    G  + AF   ++M    + P
Sbjct: 269 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 328

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP------------------ 260
             +TY+ L+ G  R  ++ +A  +L +M ++G  P+ I +N                   
Sbjct: 329 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 388

Query: 261 ----------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                     T  TYN LI+G CKN + D AE LL+EM+S G   +  ++ S+I
Sbjct: 389 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 442


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 171/336 (50%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+ PD+ TY S + G  K GRL++     E+MK     P  +TYN+LI+ +C  G 
Sbjct: 159 MKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGK 218

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L     F  EM + G+ P   +Y+ L+     E  M +A     +M   G VP+  TY  
Sbjct: 219 LPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTS 278

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+ GN   AF L +EM+  G++  ++TYT+LI  L    RM EA++LF   +  G
Sbjct: 279 LVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAG 338

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++  +NALI G     N++RA  LL E+    + PD + Y T + G C   K+E A+
Sbjct: 339 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAK 398

Query: 241 RLLDQMKRRGIKPDHI-----------SFNPTR-----------------LTYNALIQGL 272
            ++++M+  GIK + +           S NPT                  +T+  LI GL
Sbjct: 399 VVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGL 458

Query: 273 CKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGI 307
           CKN+    A +    M +  G+ P+   Y ++I+G+
Sbjct: 459 CKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGL 494



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 157/312 (50%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V P + +    +    K G+ +   R  + M   G  PT  TYN +ID    +G+
Sbjct: 89  MKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGD 148

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM  +G++P   TYN +I       ++ +     +EM      PD ITYN 
Sbjct: 149 IEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNS 208

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C+ G   K    + EM   G++P +++Y++L+    K++ M +A + + +    G
Sbjct: 209 LINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVG 268

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P+   + +L+D +C  GN+  AF L  EM  + V  + VTY  L+ G C   +++EA 
Sbjct: 269 HVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAE 328

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G+ P+  S       YNALI G  K +  D A ELL E+  +GI PD   Y
Sbjct: 329 KLFGKMVTAGVIPNLAS-------YNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLY 381

Query: 301 FSLIEGIASVDK 312
            + I G+  ++K
Sbjct: 382 GTFIWGLCGLEK 393



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 159/314 (50%), Gaps = 10/314 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    + +  S +   G LEEA++   +MK   + P   + N L+  +   G  +    F
Sbjct: 61  PGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 120

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+  G  PT  TYN++I  +  E  +  A  + +EM  +G++PD++TYN +I+GY +
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G         +EM     +P ++TY SLI    K  ++ +  + +      G+ P++V 
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVS 240

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ L+D  C    +++A     +M R+   P+E TY +L+   C+ G + +A RL ++M 
Sbjct: 241 YSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEML 300

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G++ + +       TY ALI GLC  +    AE+L  +MV+ G+ P+  +Y +LI G 
Sbjct: 301 EVGVEWNVV-------TYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGF 353

Query: 308 A---SVDKAAESSN 318
               ++D+A E  N
Sbjct: 354 VKAKNMDRALELLN 367



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 151/333 (45%), Gaps = 43/333 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+ +TY S V   CK G L +A R+  +M E G+    VTY  LIDG C+   
Sbjct: 264 MRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAER 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +MV  G++P  ++YN LIH  +  + M  A ++L E+  +GI PD + Y  
Sbjct: 324 MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGT 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE------ 174
            I G C     + A  + +EM   GI+   L YT+L+    K     E   L E      
Sbjct: 384 FIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELD 443

Query: 175 -------------------------NFLAK-----GMLPDIVMFNALIDGHCTNGNIERA 204
                                    ++  +     G+ P+  ++ A+IDG C    ++ A
Sbjct: 444 HEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAA 503

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +L ++M +  + PD   Y +LM G  +QG + EA  L D+M   G+K D        L 
Sbjct: 504 TTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLD-------LLA 556

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           Y +L+ G  +  +   A   L EM+ + I PD+
Sbjct: 557 YTSLVWGFSQCNQLQKARSFLEEMIGEEILPDE 589



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 36/288 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+ +  TY + + G+C   R++EA ++  +M   G++P   +YN LI G+    N++ A
Sbjct: 303 GVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRA 362

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +E+  +GI P    Y   I  L    K+  A  ++ EM E GI  +++ Y  L++ 
Sbjct: 363 LELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDA 422

Query: 125 YCRCGNAKKAFSLHDEM------------------------IHK------------GIQP 148
           Y + GN  +   L +EM                        + K            G+QP
Sbjct: 423 YFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQP 482

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
               YT++I  L K+N++  A  LFE    +G++PD   + +L+DG+   GN+  A +L 
Sbjct: 483 NAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALR 542

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
            +M  + +  D + Y +L+ G  +  ++++AR  L++M    I PD +
Sbjct: 543 DKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEV 590



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 123/240 (51%), Gaps = 1/240 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K RG+QPD   YG+F+ G+C   ++E A  ++ +M+ENG+    + Y TL+D Y   GN
Sbjct: 369 LKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGN 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
                   +EM +     T  T+ +LI  L   + + +A D    M    G+ P++  Y 
Sbjct: 429 PTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYT 488

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+    K A +L ++M  +G+ P    YTSL+    KQ  M+EA  L +     
Sbjct: 489 AMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEI 548

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           GM  D++ + +L+ G      +++A S L+EM   ++ PDEV    ++      G ++EA
Sbjct: 549 GMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLCIGVLKKHYELGCIDEA 608


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 174/344 (50%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY S + G  K G LEE  +++ +M+  G  P  VTYN L++ +C  G 
Sbjct: 220 MKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGR 279

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+S+  EM ++G+M    T++  +        + EA  +  +M  KG+ P+ +TY  
Sbjct: 280 MERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTC 339

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G    A  L +EM+ +G+   ++TYT L+  L K+ ++ EA+ +F      G
Sbjct: 340 LVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAG 399

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + +++  LI GH    N ERA SLL EM    +  D   Y  L+ G C   K++EA+
Sbjct: 400 IRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAK 459

Query: 241 RLLDQMKRRGIKPDHI----------------------------SFNPTRLTYNALIQGL 272
            LL++M   G+KP+++                             F P  +TY AL+ GL
Sbjct: 460 SLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGL 519

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKA 313
           CK    D A     +MV  G+ P+   Y +L++G+     +DKA
Sbjct: 520 CKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKA 563



 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 163/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  +  T+ +FV   CK G + EA ++  QM+  G+ P  VTY  L+DG C  G 
Sbjct: 290 MKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGR 349

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EMV+QG+     TY +L+  L  E K+ EA+D+ + M   GI  + + Y  
Sbjct: 350 LDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTT 409

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+    N+++A SL  EM  KG++  +  Y +LI+ L    ++ EA  L       G
Sbjct: 410 LIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECG 469

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++  ++D          A +LL++M      P+ VTY  L+ G C+ G ++EA 
Sbjct: 470 LKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAI 529

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              ++M   G++P+  +       Y AL+ GLCKN   D A  LL EM+ KG++ D+   
Sbjct: 530 SHFNKMVDLGLEPNVQA-------YTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVC 582

Query: 301 FSLIEG 306
            SL++G
Sbjct: 583 TSLMDG 588



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 151/311 (48%), Gaps = 42/311 (13%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+ +T+   +  +CKEG L EA  +L +MK  G  P  VTYN+LIDGY   G LE     
Sbjct: 192 PNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELE----- 246

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
                                         E + ++ EM   G  PD +TYN L+N +C+
Sbjct: 247 ------------------------------EVEKLVGEMRGCGCRPDVVTYNALVNCFCK 276

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  ++A+S   EM  +G+   ++T+++ +    K   + EA +LF     KGM P+ V 
Sbjct: 277 FGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVT 336

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  L+DG C  G ++ A  L  EM +  V  + VTY  L+ G C++GKV EA  +   M+
Sbjct: 337 YTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLME 396

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           R GI+ +        L Y  LI G    +  + A  LL EM  KG+  D + Y +LI G+
Sbjct: 397 RAGIRANE-------LLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGL 449

Query: 308 ASVDKAAESSN 318
            ++ K  E+ +
Sbjct: 450 CNLQKLDEAKS 460



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV  +  TY   V G+CKEG++ EA  +   M+  G+    + Y TLI G+    N
Sbjct: 360 MVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKN 419

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A S   EM  +G+    S Y  LI  L   +K+ EA  +L +M E G+ P+++ Y  
Sbjct: 420 SERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTN 479

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++   +     +A +L  +M+  G +P ++TY +L+  L K   + EA   F   +  G
Sbjct: 480 IMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLG 539

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  + AL+DG C NG +++A  LL EM    +  D V   +LM G  +QG +++A 
Sbjct: 540 LEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAF 599

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G++ D          Y   + G C       A E+L EM+  GITPD   Y
Sbjct: 600 ALKAKMINSGLQLDLYG-------YTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVY 652

Query: 301 FSLI 304
             LI
Sbjct: 653 NCLI 656



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 116/214 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P++  Y + +    K  +  EA  +L++M ++G  P  VTY  L+DG C  G+
Sbjct: 465 MDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGS 524

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  ++MV  G+ P    Y  L+  L    ++ +A  +L EM +KG+  D++    
Sbjct: 525 IDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTS 584

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ + GN + AF+L  +MI+ G+Q  +  YT  ++     N + EA ++    +  G
Sbjct: 585 LMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENG 644

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           + PD V++N LI+     GN+E A  L  EM+ +
Sbjct: 645 ITPDAVVYNCLINKCQKLGNMEEAAILQNEMESL 678


>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 159/296 (53%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P+ YT    +   CK G+LE+A  + ++M+  G  PT  +YNTLI GYCNKG 
Sbjct: 305 MQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKGL 364

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L      +  M K G+ P   T+N LI+      K+ EA+ +  EM    +VP++ITYN 
Sbjct: 365 LNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNT 424

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY + GN++    LHDEM+  GI+  +LTY +LI  L  + R  +A  L +    + 
Sbjct: 425 LINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDREN 484

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   F+ALI G C   N ERAF L K M R   HP+  T+  L+   C+    + A 
Sbjct: 485 LVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAV 544

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            ++ +M  R I PD         T + L +GL  + + +LA +L +EM  K + P+
Sbjct: 545 EVVREMSERSIAPDSD-------TLSELCRGLWLSGKEELALKLCKEMEMKHLMPE 593



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 152/308 (49%), Gaps = 9/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P   +  +++S      R + A     +M+   + P   T N ++  +C  G 
Sbjct: 270 MKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGK 329

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
           LE A      M   G  PT ++YN LI      + ++ +   LK + EK G+ PD +T+N
Sbjct: 330 LEKAIEVFKRMETMGFSPTITSYNTLIAGYC-NKGLLNSGMKLKILMEKNGVRPDDVTFN 388

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LING+CR G   +A  +  EM    + P  +TY +LI   S+        +L +  L  
Sbjct: 389 TLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRN 448

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  DI+ +NALI G C  G  ++A  L+KE+DR  + P+  T++ L+ G+C +   E A
Sbjct: 449 GIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERA 508

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L   M R G  P++        T+  LI   CKN++ D A E++REM  + I PD +T
Sbjct: 509 FQLYKSMIRSGCHPNY-------HTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDT 561

Query: 300 YFSLIEGI 307
              L  G+
Sbjct: 562 LSELCRGL 569



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 137/294 (46%), Gaps = 9/294 (3%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           S + G+   G ++  S++ E +  +  +   +   +++L   Y     L  A     +M 
Sbjct: 212 SVLKGILGSGSIDHPSKLFEAILYSYRICDSSPCVFDSLFKTYAQMKKLRNAIDVFCQMK 271

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
             G +P   + N  I   +  ++   A    +EM    I P+  T N+++  +C+ G  +
Sbjct: 272 DYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLE 331

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           KA  +   M   G  PT+ +Y +LI     +  +    +L       G+ PD V FN LI
Sbjct: 332 KAIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLI 391

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +G C  G +  A  +  EM    V P+ +TYNTL++G  + G  E   RL D+M R GIK
Sbjct: 392 NGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIK 451

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            D        LTYNALI GLC       A  L++E+  + + P+ +T+ +LI G
Sbjct: 452 AD-------ILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITG 498



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 25/250 (10%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSI----------------TYNI 120
           T  TY++++H L    K   A+ +LK +   G +  P  +                 ++ 
Sbjct: 190 TLETYSIILHILTKNHKFKSAESVLKGILGSGSIDHPSKLFEAILYSYRICDSSPCVFDS 249

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L   Y +    + A  +  +M   G  P + +  + I       R   A   +       
Sbjct: 250 LFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYR 309

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++   N ++   C  G +E+A  + K M+ M   P   +YNTL+ G C +G +    
Sbjct: 310 ISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGM 369

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   M++ G++PD +       T+N LI G C+  +   A ++  EM +  + P+  TY
Sbjct: 370 KLKILMEKNGVRPDDV-------TFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITY 422

Query: 301 FSLIEGIASV 310
            +LI G + V
Sbjct: 423 NTLINGYSQV 432



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+S T+ + ++G C     E A ++ + M  +G  P   T+  LI  +C   + + A   
Sbjct: 487 PNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEV 546

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
             EM ++ I P + T + L   L +  K   A  + KEM  K ++P+    +  IN
Sbjct: 547 VREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEMEMKHLMPEGFDKSKTIN 602


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 168/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           MKSRG V+P++ T+   V    KEG++ EAS  + +M E+G+ P   TYNT+I+G+C  G
Sbjct: 198 MKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAG 257

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  AF   DEM ++G+ P   T N ++H L ME+K  EA ++  +  ++G + D +TY 
Sbjct: 258 KLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYG 317

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI GY +     KA  L +EM  +GI P++++Y  LI  L    +  +A       L K
Sbjct: 318 TLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEK 377

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++PD V  N +I G+C  G +++AF    +M      PD  T N L+ G CR   +E+A
Sbjct: 378 GLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKA 437

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L +    +    D +       TYN +I  LCK    D A +L+ +M  K   PD  T
Sbjct: 438 FKLFNSWISKQNSVDVV-------TYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYT 490

Query: 300 YFSLIEGIASVDKAAES 316
           Y +++  +    +  E+
Sbjct: 491 YNAIVRALTHAGRTEEA 507



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 10/305 (3%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG-YCNKGNLEMAFSF 67
           D +TY + V G+C EG+++EA R+ ++M+   L+P  VTYNTLIDG +  +G+ E  F  
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTE-GFRL 194

Query: 68  RDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
            +EM  + G+ P A T+N+++     E K+ EA D + +M E G+ PD  TYN +ING+C
Sbjct: 195 LEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFC 254

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +AF + DEM  KG++P + T  +++  L  + +  EA +L      +G + D V
Sbjct: 255 KAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEV 314

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LI G+      ++A  L +EM +  + P  V+YN L+ G C  GK ++A   L+++
Sbjct: 315 TYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNEL 374

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G+ PD +S        N +I G C     D A +   +MV     PD  T   L+ G
Sbjct: 375 LEKGLVPDEVSC-------NIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRG 427

Query: 307 IASVD 311
           +  VD
Sbjct: 428 LCRVD 432



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 177/360 (49%), Gaps = 47/360 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT---------------- 44
           M   GV PD +TY + ++G CK G+L EA RM+++M   GL P                 
Sbjct: 234 MVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKK 293

Query: 45  -------------------AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                               VTY TLI GY      + A    +EM K+GI+P+  +YN 
Sbjct: 294 PEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNP 353

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L +  K  +A D L E+ EKG+VPD ++ NI+I+GYC  G   KAF  H++M+   
Sbjct: 354 LIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNS 413

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P + T   L+  L + + + +A +LF ++++K    D+V +N +I   C  G ++ AF
Sbjct: 414 FKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAF 473

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG--IKPDHISFN---P 260
            L+ +M+  K  PD+ TYN ++      G+ EEA + + ++   G  +K    S      
Sbjct: 474 DLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHDTSQELDAS 533

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG-------IASVDKA 313
           + + Y+  I  LC   +   A +L +E   KG++ +  TY  L++G       I+ VD A
Sbjct: 534 SDIMYSQQISDLCTQGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGFLKRRKSISKVDHA 593


>gi|255660998|gb|ACU25668.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 376

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 161/295 (54%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK      DS TYG  V G CK G + ++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSDFVEDSITYGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  ++M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVRCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG+ P+++TY+ L+  L   +++  A QL+   ++KG
Sbjct: 205 LINGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G  + A SL  +M+R K  P+ VT+NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQLALSLYJDMNRWKCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD IS+N T       ++GLC       A   L + V K I P
Sbjct: 325 VIWARVLRNGLEPDIISYNIT-------LKGLCSCNRICDAILFLHDAVRKKIVP 372



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 157/292 (53%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGNEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L  + K+ E   + + M +   V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDKGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGYINKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  + +A  +  + +  G  P+  ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  ++  P  +TYNTL++G C+     EA  L+ +M  +G+       NP
Sbjct: 180 FEDAIRVFREMGTVRCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + +TY+ L++GLC + + + A +L  +++SKG  PD   +  LI G+ SV K
Sbjct: 233 SVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGK 284



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 116/222 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVRCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G+ P+  TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++T+ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKTQLALSLYJDMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +  R K+ P ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRICDAILFLHDAVRKKIVPTKIT 376


>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 159/296 (53%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P+ YT    +   CK G+LE+A  + ++M+  G  PT  +YNTLI GYCNKG 
Sbjct: 172 MQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNKGL 231

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L      +  M K G+ P   T+N LI+      K+ EA+ +  EM    +VP++ITYN 
Sbjct: 232 LNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNT 291

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY + GN++    LHDEM+  GI+  +LTY +LI  L  + R  +A  L +    + 
Sbjct: 292 LINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDREN 351

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   F+ALI G C   N ERAF L K M R   HP+  T+  L+   C+    + A 
Sbjct: 352 LVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAV 411

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            ++ +M  R I PD         T + L +GL  + + +LA +L +EM  K + P+
Sbjct: 412 EVVREMSERSIAPDSD-------TLSELCRGLWLSGKEELALKLCKEMEMKHLMPE 460



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 153/308 (49%), Gaps = 9/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P   +  +++S      R + A     +M+   + P   T N ++  +C  G 
Sbjct: 137 MKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFCKWGK 196

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
           LE A     +M   G  PT ++YN LI      + ++ +   LK + EK G+ PD +T+N
Sbjct: 197 LEKAIEVFKKMETMGFSPTITSYNTLIAGYC-NKGLLNSGMKLKILMEKNGVRPDDVTFN 255

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LING+CR G   +A  +  EM    + P  +TY +LI   S+        +L +  L  
Sbjct: 256 TLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRN 315

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  DI+ +NALI G C  G  ++A  L+KE+DR  + P+  T++ L+ G+C +   E A
Sbjct: 316 GIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERA 375

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L   M R G  P++        T+  LI   CKN++ D A E++REM  + I PD +T
Sbjct: 376 FQLYKSMIRSGCHPNY-------HTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSDT 428

Query: 300 YFSLIEGI 307
              L  G+
Sbjct: 429 LSELCRGL 436



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 7/263 (2%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           +   +++L   Y     L  A     +M   G +P   + N  I   +  ++   A    
Sbjct: 110 SPCVFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFY 169

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           +EM    I P+  T N+++  +C+ G  +KA  +  +M   G  PT+ +Y +LI     +
Sbjct: 170 REMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNK 229

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
             +    +L       G+ PD V FN LI+G C  G +  A  +  EM    V P+ +TY
Sbjct: 230 GLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITY 289

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           NTL++G  + G  E   RL D+M R GIK D        LTYNALI GLC       A  
Sbjct: 290 NTLINGYSQVGNSEMGGRLHDEMLRNGIKAD-------ILTYNALILGLCMEGRTKKAAY 342

Query: 284 LLREMVSKGITPDDNTYFSLIEG 306
           L++E+  + + P+ +T+ +LI G
Sbjct: 343 LVKELDRENLVPNSSTFSALITG 365



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 7/194 (3%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            ++ L   Y +    + A  +  +M   G  P + +  + I       R   A   +   
Sbjct: 113 VFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREM 172

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
               + P++   N ++   C  G +E+A  + K+M+ M   P   +YNTL+ G C +G +
Sbjct: 173 QRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNKGLL 232

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
               +L   M++ G++PD +       T+N LI G C+  +   A ++  EM +  + P+
Sbjct: 233 NSGMKLKILMEKNGVRPDDV-------TFNTLINGFCRGGKLHEANKIFSEMKANDVVPN 285

Query: 297 DNTYFSLIEGIASV 310
             TY +LI G + V
Sbjct: 286 TITYNTLINGYSQV 299



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            + SL    ++  ++  A  +F      G LP +   NA I    +    + A +  +EM
Sbjct: 113 VFDSLFKTYAQMKKLRNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREM 172

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            R ++ P+  T N +M   C+ GK+E+A  +  +M+  G       F+PT  +YN LI G
Sbjct: 173 QRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMG-------FSPTITSYNTLIAG 225

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            C     +   +L   M   G+ PDD T+ +LI G     K  E++
Sbjct: 226 YCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEAN 271



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+S T+ + ++G C     E A ++ + M  +G  P   T+  LI  +C   + + A   
Sbjct: 354 PNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEV 413

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
             EM ++ I P + T + L   L +  K   A  + KEM  K ++P+       IN
Sbjct: 414 VREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEMEMKHLMPEGFDKXKTIN 469


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 170/350 (48%), Gaps = 45/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+S  Y S + G  K GR++EA  + ++M E G  P  +T+  +IDG C  GN
Sbjct: 321 MAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN 380

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    +EM++ G  P   TY  +I  L    ++  A  ++K M   G  PDS+TY  
Sbjct: 381 FEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYIC 440

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL------------------------ 156
           L++G+C+ G   +A  L DE+      P +  Y+SL                        
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAA 500

Query: 157 ------------IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN--GNIE 202
                       I  L K  R+ EA ++F+  +++G  PD   +N LI+G C +    +E
Sbjct: 501 AETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVE 560

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           RAF+LL +++++   PD VTY  L  G C+ G+V+ A ++L++   RG   D ++     
Sbjct: 561 RAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVA----- 615

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             Y AL  GLC   + D A  L +EMV +G  PD   Y  +I G+  V K
Sbjct: 616 --YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKK 663



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 161/307 (52%), Gaps = 6/307 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD+  Y + + G+ K G  +EA ++L+ M     VPT VTY  L++  C  G 
Sbjct: 251 MEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGT 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      M   G  P +  Y  LIH      +M EA  +  EM E G  PD IT+ +
Sbjct: 311 LERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTV 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ GN ++A    +EM+  G +P ++TYT++I  LSK  R+  A ++ +  +A G
Sbjct: 371 MIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V +  L+DG C  G ++ A  LL E+D+    P+   Y++L++G C  G VE   
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVE--- 487

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + LD +  +  K    + +P      ++I GLCK    D A  + + MVS+G  PD  TY
Sbjct: 488 KTLDDLFEQS-KAAAETLDPGLCC--SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTY 544

Query: 301 FSLIEGI 307
             LI G+
Sbjct: 545 NILINGL 551



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 162/319 (50%), Gaps = 8/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+++++   +    +  R ++A    E MK     P   T+  L+D  C  G 
Sbjct: 145 MLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGM 204

Query: 61  LEMAFSFRDEMVKQGIMPT-ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            E AF    EM+  G +P   + +  ++  LL  +++ EA ++  +M + G  PD+I YN
Sbjct: 205 DEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYN 264

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G  + G+A++A  + D M+ K   PT +TY  L+  L K   +  A++LF    A 
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAAS 324

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+ V++ +LI G   +G ++ A SL  EM      PD +T+  ++ G C+ G  E+A
Sbjct: 325 GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQA 384

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +  ++M R G KP+ +       TY  +IQGL K      A  +++ M++ G  PD  T
Sbjct: 385 AKSFEEMMRGGCKPNVV-------TYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVT 437

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y  L++G   + +  E++ 
Sbjct: 438 YICLLDGFCKLGRLDEAAQ 456



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 158/304 (51%), Gaps = 10/304 (3%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEMAFSFRDEMV 72
           S + G+CK GRL+EA R+ ++M   G  P A TYN LI+G C   +  +E AF+   ++ 
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           K G +P A TY  L   L    ++  A  ML+E   +G   D + Y  L  G C  G   
Sbjct: 571 KVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A SL  EM+ +G  P    Y  +I  L K  ++ +A + F+  + KG  P +  + AL+
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALV 690

Query: 193 DGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
              C  GN++ AF   + M  R ++    + Y+ L+HG C+  KV+ A +L + M  RG 
Sbjct: 691 QALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
                   PT +T  +L  GL ++ + + A+ELL+EM + G  P   T+ ++++G+   D
Sbjct: 751 V-------PTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSD 803

Query: 312 KAAE 315
           ++ +
Sbjct: 804 ESGK 807



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 152/316 (48%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNT-LIDGYCNKG 59
           MK +  +PD +T+   V  +CK G  E+A  +  +M   G VP     +T ++       
Sbjct: 180 MKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAK 239

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A     +M K G  P A  YN +I  L       EA  +L  M  K  VP  +TY 
Sbjct: 240 RVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYG 299

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL+N  C+ G  ++A  L   M   G +P  + YTSLI   +K  RM EA  LF+  +  
Sbjct: 300 ILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEA 359

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD++    +IDG C +GN E+A    +EM R    P+ VTY T++ G  + G+V  A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            R++  M   G  PD +       TY  L+ G CK    D A +LL E+     +P+   
Sbjct: 420 FRIMKGMIAHGCFPDSV-------TYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472

Query: 300 YFSLIEGI---ASVDK 312
           Y SL+ G+    SV+K
Sbjct: 473 YSSLVNGLCDGGSVEK 488



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 169/348 (48%), Gaps = 40/348 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PDS TY   + G CK GRL+EA+++L+++ +    P    Y++L++G C+ G+
Sbjct: 426 MIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGS 485

Query: 61  LEMAFSFRDEMVKQGIMPTASTYN-----LLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           +E      D++ +Q     A T +      +I  L    ++ EA  + + M  +G  PD+
Sbjct: 486 VEKTL---DDLFEQS-KAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDA 541

Query: 116 ITYNILINGYCRC--GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
            TYNILING CR      ++AF+L  ++   G  P  +TYT L   L K   +  A ++ 
Sbjct: 542 TTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKML 601

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           E   ++G   D+V + AL  G C  G ++RA SL +EM R    PD   Y  +++G  + 
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKV 661

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNP-----------------------------TRLT 264
            K+E+A +  D+M  +G KP   ++                               + + 
Sbjct: 662 KKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMI 721

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           Y+ALI G CK  + D A +L  +M+S+G  P   T  SL +G+    K
Sbjct: 722 YDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGK 769



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 149/290 (51%), Gaps = 10/290 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK--EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           M S G +PD+ TY   ++G+C+  E R+E A  +L  +++ G +P AVTY  L  G C  
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKI 591

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G ++ A    +E   +G       Y  L   L  + ++  A  + +EM  +G  PD+  Y
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             +ING  +    + A    DEMI KG +PT+ TYT+L+  L     + EA   FE+ LA
Sbjct: 652 CCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLA 711

Query: 179 KG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           +G ++  +++++ALI G C    ++ A  L ++M      P  VT  +L  G  R GK E
Sbjct: 712 RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTE 771

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           +A+ LL +M   G  P H +      T+ A++ GL K+ E     +L++E
Sbjct: 772 KAQELLQEMAAGG-SPPHAA------TFTAILDGLRKSDESGKLLKLVQE 814



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 145/316 (45%), Gaps = 43/316 (13%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           ++ G      TYN L++    + N    ++  +EM+K GI P   ++N+LI      R+ 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF----------------SLHDE 140
            +A    + M  K   PD  T+ IL++  C+ G  +KAF                +LH  
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTA 230

Query: 141 MIHK--------------------GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           M+                      G  P  + Y ++I  L+K     EA ++ +N LAK 
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA 290

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  V +  L++  C  G +ERA  L + M      P+ V Y +L+HG  + G+++EA 
Sbjct: 291 CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEAC 350

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M   G +PD I       T+  +I GLCK+   + A +   EM+  G  P+  TY
Sbjct: 351 SLFDEMVEAGYRPDVI-------THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G++ + + A +
Sbjct: 404 TTIIQGLSKIGRVANA 419



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 8/253 (3%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           FR    + G      TYN L++ L+ E+   +   + +EM + GI P++ ++NILI  + 
Sbjct: 106 FRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFA 165

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PDI 185
           R   A  A +  + M  K  +P + T+  L+  L K     +A ++F   +A G + PD 
Sbjct: 166 RTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDR 225

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            +  A++        ++ A  +  +M++    PD + YNT++ G  + G  +EA ++LD 
Sbjct: 226 ALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDN 285

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +          PT +TY  L+  LCK    + AEEL R M + G  P+   Y SLI 
Sbjct: 286 MLAKACV-------PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIH 338

Query: 306 GIASVDKAAESSN 318
           G A   +  E+ +
Sbjct: 339 GFAKSGRMKEACS 351


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 168/335 (50%), Gaps = 29/335 (8%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           + G++PDS+TY + ++G CK G ++ A R+L     NG VP   TY +LIDG C++G   
Sbjct: 314 NEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETN 373

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A +  +E + +GI P    YN LI  L  +  ++EA  +  EM EKG++P+  T+NIL+
Sbjct: 374 RALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILV 433

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           NG C+ G    A  L   MI KG  P + T+  LI   S Q +M  A ++ +  +  G+ 
Sbjct: 434 NGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVD 493

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +N+L++G C     E      K M      P+  T+N L+   CR  K+++A  L
Sbjct: 494 PDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGL 553

Query: 243 LDQMKRRGIKPDHISFNP-----------------------------TRLTYNALIQGLC 273
           L++MK + + PD ++F                               +  TYN +I    
Sbjct: 554 LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFT 613

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +     +AE+L +EMV + + PD  TY  +++G  
Sbjct: 614 EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 175/371 (47%), Gaps = 63/371 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV     T+   +  +CK+G ++E  ++L+++ + G++P   TYN  I G C KG 
Sbjct: 207 MLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGE 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      ++ QG  P   TYN LI+ L    K  EA+  L ++  +G+ PDS TYN 
Sbjct: 267 LDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNT 326

Query: 121 LINGYCR---------------------------------C--GNAKKAFSLHDEMIHKG 145
           LI GYC+                                 C  G   +A +L +E + KG
Sbjct: 327 LIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKG 386

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I+P ++ Y +LI  LS Q  ++EA QL      KG++P++  FN L++G C  G +  A 
Sbjct: 387 IKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD 446

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
            L+K M      PD  T+N L+HG   Q K+E A  +LD M   G+ PD  ++N      
Sbjct: 447 GLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGL 506

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P   T+N L++ LC+  + D A  LL EM +K + PD 
Sbjct: 507 CKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDA 566

Query: 298 NTYFSLIEGIA 308
            T+ +LI+G  
Sbjct: 567 VTFGTLIDGFC 577



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 160/315 (50%), Gaps = 8/315 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++P+   Y + + G+  +G + EA+++  +M E GL+P   T+N L++G C  G +  
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A      M+ +G  P   T+N+LIH    + KM  A ++L  M + G+ PD  TYN L+N
Sbjct: 445 ADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLN 504

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+    +     +  M+ KG  P + T+  L+  L + +++ +A  L E    K + P
Sbjct: 505 GLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNP 564

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRL 242
           D V F  LIDG C NG+++ A++L ++M+ +  V     TYN ++H    +  V  A +L
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKL 624

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M  R + PD         TY  ++ G CK    DL  + L EM+  G  P   T   
Sbjct: 625 FQEMVDRCLGPDG-------YTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGR 677

Query: 303 LIEGIASVDKAAESS 317
           +I  +   D+  E++
Sbjct: 678 VINCLCVEDRVYEAA 692



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 162/337 (48%), Gaps = 28/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ PD Y++   +   C+  R   A R+L  M   G     V Y T++ G+  +  
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  +    +M+  G+    ST+N L+H L  +  + E + +L ++ ++G++P+  TYN 
Sbjct: 197 KDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNF 256

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G C+ G    A  +   +I +G +P ++TY  LI+ L K ++  EA+      + +G
Sbjct: 257 FIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEG 316

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   +N LI G+C  G ++ A  +L         PDE TY +L+ G C +G+   A 
Sbjct: 317 LEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRAL 376

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L ++   +GIKP+ I +N                            P   T+N L+ GL
Sbjct: 377 ALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGL 436

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           CK      A+ L++ M+SKG  PD  T+  LI G ++
Sbjct: 437 CKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYST 473



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 143/298 (47%), Gaps = 10/298 (3%)

Query: 14  GSFVSGM---CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           G +V  M    ++G+++EA  + E+M      PT  +YN ++    + G  + A      
Sbjct: 77  GVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMR 136

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M  +GI P   ++ + +       +   A  +L  M  +G   + + Y  ++ G+     
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             + + L  +M+  G+   + T+  L+ VL K+  + E ++L +  + +G+LP++  +N 
Sbjct: 197 KDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNF 256

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
            I G C  G ++ A  ++  +      PD VTYN L++G C+  K +EA   L ++   G
Sbjct: 257 FIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEG 316

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           ++PD         TYN LI G CK     LAE +L   V  G  PD+ TY SLI+G+ 
Sbjct: 317 LEPD-------SFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLC 367



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 144/303 (47%), Gaps = 7/303 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P  ++Y + +S +   G  ++A ++  +M++ G+ P   ++   +  +C       A  
Sbjct: 108 EPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALR 167

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             + M  QG       Y  ++     E    E  ++  +M   G+     T+N L++  C
Sbjct: 168 LLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLC 227

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G+ K+   L D++I +G+ P + TY   I  L ++  +  A ++    + +G  PD+V
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVV 287

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N LI G C N   + A   L ++    + PD  TYNTL+ G C+ G V+ A R+L   
Sbjct: 288 TYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNA 347

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G  PD         TY +LI GLC   E + A  L  E + KGI P+   Y +LI+G
Sbjct: 348 VFNGFVPDE-------FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400

Query: 307 IAS 309
           +++
Sbjct: 401 LSN 403



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 150/306 (49%), Gaps = 8/306 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGN 60
           K  G +    TY S +  +   G+ E    +L  M++N G       Y   +  Y  KG 
Sbjct: 32  KEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGAMKNYGRKGK 91

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  + M      PT  +YN ++  L+      +A  +   M ++GI PD  ++ I
Sbjct: 92  VQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +  +CR      A  L + M  +G +  ++ Y +++    ++N   E  +LF   LA G
Sbjct: 152 RMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASG 211

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +  FN L+   C  G+++    LL ++ +  V P+  TYN  + G C++G+++ A 
Sbjct: 212 VSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAV 271

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R++ ++  +G KPD +       TYN LI GLCKN +   AE  L ++V++G+ PD  TY
Sbjct: 272 RMVGRLIDQGPKPDVV-------TYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTY 324

Query: 301 FSLIEG 306
            +LI G
Sbjct: 325 NTLIAG 330


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 157/304 (51%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  + YTY + ++G+C  GR+ E   ML++ +  G VPTA+TYN++I+G+   G 
Sbjct: 482 MKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGM 541

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF+   +M  +GI P   TY   I           A  ML ++  KG+ PD   YN 
Sbjct: 542 MGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNS 601

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ GN   A  +   M+  G+ P +  Y S I        M EA + +E  + +G
Sbjct: 602 LIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEG 661

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D   +  LIDG   +GN+  A  L  EM      PD +T+  L HG CR G +++AR
Sbjct: 662 IDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDAR 721

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD+M R  I+P+        L YN LI G  +N +   A  L  EM+ + I PDD TY
Sbjct: 722 KLLDEMNRLDIRPN-------VLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTY 774

Query: 301 FSLI 304
             L+
Sbjct: 775 DILV 778



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 160/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+P   TY S +   C  G ++EA ++  +M   G  P  VTY TL+ G+ NK  
Sbjct: 412 MNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAA 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A++   EM + G+     TYN LI+ L +  ++ E  +MLK    +G VP ++TYN 
Sbjct: 472 FDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNS 531

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+ + G    AF+++ +M  KGI P ++TYTS I    K +    A ++  +   KG
Sbjct: 532 IINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N+LI G C  GN+  A  +L  M +  + P+   YN+ + G      +EEA 
Sbjct: 592 LRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEAL 651

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R  ++M + GI  D         TY  LI G  K+     A +L  EMV+KG  PD  T+
Sbjct: 652 RFYEKMIKEGIDLDTA-------TYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITF 704

Query: 301 FSLIEGI 307
            +L  G+
Sbjct: 705 TALTHGL 711



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 162/311 (52%), Gaps = 14/311 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD++TY   +  +C+  ++ EA  + E+M E G+ P  VTY++L+  YC  G 
Sbjct: 378 MADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGC 436

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM  +G  P   TY  L+   + +    +A  +L EM + G+  +  TYN 
Sbjct: 437 MDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNT 496

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C  G   +   +      +G  PT +TY S+I    K   M  A  +++   AKG
Sbjct: 497 LINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKG 556

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV + + IDG+C     + A  +L ++    + PD   YN+L++G C++G +  A 
Sbjct: 557 IPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHAL 616

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR---EMVSKGITPDD 297
           ++L  M + G+ P+ IS       YN+ I G  KN +  + EE LR   +M+ +GI  D 
Sbjct: 617 QVLVLMLKDGLLPN-IS------VYNSFITGY-KNLK--MMEEALRFYEKMIKEGIDLDT 666

Query: 298 NTYFSLIEGIA 308
            TY +LI+G +
Sbjct: 667 ATYTTLIDGFS 677



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 159/308 (51%), Gaps = 12/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P +  +   + G+  +   ++A  + ++M ++G +P A TYN LI   C +  
Sbjct: 343 MRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG-IPDAFTYNILIHWLCQRRK 401

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  ++M + G+ P   TY+ L+    +   M EA  +  EM  KG  P+ +TY  
Sbjct: 402 IREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTT 461

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+       KA++L  EM   G+     TY +LI  L    R+ E  ++ + F  +G
Sbjct: 462 LMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEG 521

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N++I+G    G +  AF++ ++M    + P+ VTY + + G C+    + A 
Sbjct: 522 FVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLAL 581

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDN 298
           ++L+ ++ +G++PD  +       YN+LI G C  QEG+++  L  L  M+  G+ P+ +
Sbjct: 582 KMLNDVRCKGLRPDIAA-------YNSLIYGFC--QEGNMSHALQVLVLMLKDGLLPNIS 632

Query: 299 TYFSLIEG 306
            Y S I G
Sbjct: 633 VYNSFITG 640



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 177/446 (39%), Gaps = 148/446 (33%)

Query: 1   MKSRGVQP-----------------------------------DSYTYGSFVSGMCKEGR 25
           M++RGV P                                   D++ +   +    KEG 
Sbjct: 133 MEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEGM 192

Query: 26  LEEASRMLEQ-----------------------------------MKENGLVPTAVTYNT 50
            ++A R+ ++                                   M++ G VP   T+N+
Sbjct: 193 YDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNS 252

Query: 51  LID-----------------------------------GYCNKGNLEMAFSFRDEMVKQG 75
           ++D                                   GYC +  +  A    +E ++ G
Sbjct: 253 VVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDG 312

Query: 76  IMPTASTY-----------------------------------NLLIHELLMERKMVEAD 100
           ++PT  TY                                   N++I  LL ++   +A 
Sbjct: 313 LVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAV 372

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
            + KEM + GI PD+ TYNILI+  C+    ++A +L ++M   G++P ++TY SL+   
Sbjct: 373 SLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCY 431

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
                M EA +L+     KG  P++V +  L+ GH      ++A++LL EM +  V  ++
Sbjct: 432 CVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCND 491

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TYNTL++G C  G+V E   +L + +  G       F PT +TYN++I G  K      
Sbjct: 492 YTYNTLINGLCVVGRVCEVGEMLKRFETEG-------FVPTAMTYNSIINGFIKAGMMGS 544

Query: 281 AEELLREMVSKGITPDDNTYFSLIEG 306
           A  + ++M +KGI P+  TY S I+G
Sbjct: 545 AFAVYQQMCAKGIPPNIVTYTSFIDG 570



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 125/284 (44%), Gaps = 8/284 (2%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
            M+  G+ P A +   L+       +   A +   EM  +G    A  +++++     E 
Sbjct: 132 SMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEG 191

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
              +A  +  EM    I PD    ++ I   C+  +A +A  +  +M   G  P   T+ 
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           S++ VL K  RM EA  + +  LA G    +V+   L+ G+C    + +A  + +E  R 
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRD 311

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + P +VTY  L+ G   +G  E+A  L  QM+  G+ P    F       N +I+GL  
Sbjct: 312 GLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEF-------NMVIKGLLN 364

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           ++    A  L +EM   GI PD  TY  LI  +    K  E+ N
Sbjct: 365 DKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALN 407


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 146/258 (56%), Gaps = 1/258 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M   G +PD  TY + + G CK   L +AS M + +K   +  P  VTY ++I GYC  G
Sbjct: 232 MSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAG 291

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  A S  D+M++ GI PT  T+N+L+       +M+ A+++  +M   G  PD +T+ 
Sbjct: 292 KMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFT 351

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYCR G   + F L +EM  +G+ P   TY+ LI  L  +NR+++A +L     +K
Sbjct: 352 SLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK 411

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++P   M+N +IDG C  G +  A  +++EM++ K  PD++T+  L+ G C +G++ EA
Sbjct: 412 DIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEA 471

Query: 240 RRLLDQMKRRGIKPDHIS 257
             +  +M   G  PD I+
Sbjct: 472 VSIFHKMVAIGCSPDKIT 489



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 155/318 (48%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS GV P++   G  VS   ++G+L  A+ +L Q  E  +    +  N+L++       
Sbjct: 129 MKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFE--VEGCCMVVNSLLNTLVKLDR 186

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DE ++        T+N+LI  L    K  +A ++L  M   G  PD +TYN 
Sbjct: 187 VEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNT 246

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI G+C+     KA  +  ++    +  P ++TYTS+I    K  +M EA  L ++ L  
Sbjct: 247 LIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P  V FN L+DG+   G +  A  +  +M      PD VT+ +L+ G CR G+V + 
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQG 366

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL ++M  RG+ P+         TY+ LI  LC       A ELL ++ SK I P    
Sbjct: 367 FRLWEEMNARGMFPN-------AFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM 419

Query: 300 YFSLIEGIASVDKAAESS 317
           Y  +I+G     K  E++
Sbjct: 420 YNPVIDGFCKAGKVNEAN 437



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 121/293 (41%), Gaps = 46/293 (15%)

Query: 60  NLEMAFSFRD-EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           N  + F F +    K  I  +  TYNLL   L        A  M + M   G+ P++   
Sbjct: 82  NPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLL 141

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             L++ +   G    A +L  +     ++   +   SL+  L K +R+ +A +LF+  L 
Sbjct: 142 GFLVSSFAEKGKLHFATALLLQSFE--VEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLR 199

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH---------- 228
                D   FN LI G C  G  E+A  LL  M      PD VTYNTL+           
Sbjct: 200 FQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNK 259

Query: 229 --------------------------GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
                                     G C+ GK+ EA  LLD M R GI        PT 
Sbjct: 260 ASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIY-------PTN 312

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           +T+N L+ G  K  E   AEE+  +M+S G  PD  T+ SLI+G   V + ++
Sbjct: 313 VTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQ 365



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 41/207 (19%)

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL-------------- 191
           I+ +  TY  L   L K      A Q+FE   + G+ P+  +   L              
Sbjct: 99  IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFAT 158

Query: 192 --------IDGHCTNGN-----------IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
                   ++G C   N           +E A  L  E  R +   D  T+N L+ G C 
Sbjct: 159 ALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCG 218

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            GK E+A  LL  M   G +PD +       TYN LIQG CK+ E + A E+ +++ S  
Sbjct: 219 VGKAEKALELLGVMSGFGCEPDIV-------TYNTLIQGFCKSNELNKASEMFKDVKSGS 271

Query: 293 I-TPDDNTYFSLIEGIASVDKAAESSN 318
           + +PD  TY S+I G     K  E+S+
Sbjct: 272 VCSPDVVTYTSMISGYCKAGKMREASS 298


>gi|255660970|gb|ACU25654.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 350

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 59  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 118

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 119 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 178

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 179 LINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKG 238

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 239 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 298

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I    NT
Sbjct: 299 VIWARILRNGLEPDIISYNIT-------LEGLCSCNRISDAILFLHDAVTKKIVLTKNT 350



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 132/264 (50%), Gaps = 8/264 (3%)

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           N ++ GY     ++  F   + M  +G   + S++N ++  L    K+ E   + + M E
Sbjct: 3   NAMLKGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNTMMRGLFDNGKVDEVISIWELMKE 61

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
            G V DSITY IL++G+C+ G   K+  + +    KG       Y+++I  L K+  +  
Sbjct: 62  SGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDR 121

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  +    +  G  P++ ++N LI+G       E A  + +EM  M   P  +TYNTL++
Sbjct: 122 AVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLIN 181

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           G C+     EA  L+ ++  +G+ P  I       TY+ L++GLC + + + A +L  ++
Sbjct: 182 GFCKNKMFGEAYNLVKELLDKGLDPGVI-------TYSMLMEGLCFDHKVERALQLWNQV 234

Query: 289 VSKGITPDDNTYFSLIEGIASVDK 312
            SKG  PD   +  LI G+ SV K
Sbjct: 235 TSKGFKPDVQMHNILIHGLCSVGK 258



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N ++ GY R    K  F L + M  +G   ++ ++ +++  L    ++ E   ++E    
Sbjct: 3   NAMLKGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNTMMRGLFDNGKVDEVISIWELMKE 61

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G + D + +  L+ G C NG I+++  +L+  ++     D   Y+ +++G C++  ++ 
Sbjct: 62  SGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDR 121

Query: 239 ARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           A  +L+ M + G KP+ H+        YN LI GL    + + A  + REM +   +P  
Sbjct: 122 AVSVLNGMIKSGCKPNVHV--------YNTLINGLVGASKFEDAIRVFREMGTMHCSPTI 173

Query: 298 NTYFSLIEGIASVDKAAESSN 318
            TY +LI G        E+ N
Sbjct: 174 ITYNTLINGFCKNKMFGEAYN 194


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 167/314 (53%), Gaps = 7/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S G +P+ +TY + ++G CKE +L  A  +L +M+E GLVP   TY TLIDG+C  GN
Sbjct: 356 VRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGN 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+   D M K+G  P   TYN +I  L  +  + EA  +L ++   G+  D +TY I
Sbjct: 416 FVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTI 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +CR  +  ++    ++M+  G  P + +YT+LI    +Q +M E+++LFE  ++ G
Sbjct: 476 LMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLG 535

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + ++I G+C  GN   A  L + M      PD +TY  L+ G C++ K+++AR
Sbjct: 536 LIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDAR 595

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M  +G+ P  +    TRLT   L    CK  +   A  +L  +  +      NT 
Sbjct: 596 NLYDAMMDKGLSPCEV----TRLT---LAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTL 648

Query: 301 FSLIEGIASVDKAA 314
              +     +D AA
Sbjct: 649 VRKLCSEGKLDMAA 662



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 167/335 (49%), Gaps = 29/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PD  ++   V   C  GR+ EA R L  M E G +    T   +ID +C KG 
Sbjct: 215 MCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGY 274

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +     +  +MV+ G+ P    +  LI+ L  +  + +A ++L+EM  +G  P+  T+  
Sbjct: 275 VNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTT 334

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C+ G  +KAF L  +++   G +P + TYT++I    K++++  A+ L      +
Sbjct: 335 LIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQ 394

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+   +  LIDGHC  GN  RA+ L+  M +    P+  TYN ++ G C++G ++EA
Sbjct: 395 GLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEA 454

Query: 240 RRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQG 271
            RLL+++   G++ D ++                            F P   +Y  LI  
Sbjct: 455 YRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLIST 514

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            C+ ++   +E L  E VS G+ P   TY S+I G
Sbjct: 515 FCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICG 549



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 162/319 (50%), Gaps = 8/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M  RG +P+ YT+ + + G+CK+G  E+A R+ L+ ++ +G  P   TY  +I+GYC + 
Sbjct: 320 MVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKED 379

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A      M +QG++P  +TY  LI         V A +++  MG++G  P+  TYN
Sbjct: 380 KLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYN 439

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+ G+  +A+ L +++   G+Q   +TYT L+ V  +Q     +   F   L  
Sbjct: 440 AIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKV 499

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  +  LI   C    ++ +  L +E   + + P + TY +++ G CR G    A
Sbjct: 500 GFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLA 559

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L  +M   G  PD I       TY ALI GLCK  + D A  L   M+ KG++P + T
Sbjct: 560 VKLFQRMSNHGCAPDSI-------TYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVT 612

Query: 300 YFSLIEGIASVDKAAESSN 318
             +L       D ++ + N
Sbjct: 613 RLTLAYEYCKKDDSSTAIN 631



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 162/301 (53%), Gaps = 11/301 (3%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V    + G+L+EA  M+ +M+  GLVP+  T N ++D     G +E+A +   EM ++G+
Sbjct: 161 VMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGV 220

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
            P   ++ L++       +++EA+  L  M E+G + D+ T  ++I+ +C+ G   +   
Sbjct: 221 SPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVG 280

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
              +M+  G+ P ++ +T+LI  L KQ  + +A +L E  + +G  P++     LIDG C
Sbjct: 281 YFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLC 340

Query: 197 TNGNIERAFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
             G  E+AF L  ++ R   + P+  TY  +++G C++ K+  A  LL +M+ +G+ P+ 
Sbjct: 341 KKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN- 399

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDK 312
                   TY  LI G CK      A EL+  M  +G +P+  TY ++I+G+    S+D+
Sbjct: 400 ------TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDE 453

Query: 313 A 313
           A
Sbjct: 454 A 454


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 166/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+ +  EM EKG+VP+S+T+  LI+G
Sbjct: 197 FRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +     G+ PD
Sbjct: 257 HCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD      TR TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD------TR-TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 139/229 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV PD YTY   ++G+CKE ++++A+++ ++M E GLVP +VT+ TLIDG+C  G 
Sbjct: 203 MHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGW 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM   G+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 170/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLITAYLELGFLRDAIDCYRLTREHKFCVPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    E  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+ P + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD VTYN L++G C++G +++A
Sbjct: 242 GLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M   G+KPD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 HDLIDEMSMXGLKPD-------KITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 163/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P   TY   +   CK     +A  +L++M+  G  P  VTYN LI+  CN+G+
Sbjct: 188 MLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGD 247

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   ++   G  P A TY  ++  L    +  E +++  EM      PD +T+N 
Sbjct: 248 VDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNT 307

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C+ G   +A  + D M   G  P ++TY+S++  L    R+ +A +L     + G
Sbjct: 308 IVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYG 367

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +  ++ G C+    E A  L+ EM      PDEVT+NT++   C++G V+ A 
Sbjct: 368 CKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAI 427

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++++QM   G  PD +       TYN++I GLC  +  D A ELL  + S G  PD  T+
Sbjct: 428 KVVEQMSENGCNPDIV-------TYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTF 480

Query: 301 FSLIEGIASVDKAAES 316
            +L++G+ SVD+  ++
Sbjct: 481 NTLLKGLCSVDRWEDA 496



 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 164/312 (52%), Gaps = 13/312 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G      TY + V+G C+ GR+E+A R++  M      P   T+N LI   C +G +  A
Sbjct: 125 GASATVVTYNTMVNGYCRAGRIEDARRLISGMP---FPPDTFTFNPLIRALCVRGRVPDA 181

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +  D+M+ +G  P+  TY++L+          +A  +L EM  KG  PD +TYN+LIN 
Sbjct: 182 LAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINA 241

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G+  +A ++  ++   G +P  +TYT ++  L    R  E ++LF    +    PD
Sbjct: 242 MCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPD 301

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V FN ++   C  G ++RA  ++  M      PD VTY++++ G C  G+V++A  LL 
Sbjct: 302 EVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLS 361

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++K  G KPD I+       Y  +++GLC  ++ + AEEL+ EMV     PD+ T+ ++I
Sbjct: 362 RLKSYGCKPDTIA-------YTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVI 414

Query: 305 EGIAS---VDKA 313
             +     VD+A
Sbjct: 415 ASLCQKGLVDRA 426



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 163/337 (48%), Gaps = 26/337 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S    PD  T+ + V+ +C++G ++ A ++++ M E+G +P  VTY++++DG C+ G 
Sbjct: 293 MASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGR 352

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      +   G  P    Y  ++  L    +   A++++ EM      PD +T+N 
Sbjct: 353 VDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNT 412

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G   +A  + ++M   G  P ++TY S+I  L  +  + +A +L  N  + G
Sbjct: 413 VIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYG 472

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV FN L+ G C+    E A  L+  M      PD  T+NT++   C++G + +A 
Sbjct: 473 CKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAI 532

Query: 241 RLLDQMKRRGIKPDHISFN--------------------------PTRLTYNALIQGLCK 274
             L  M   G  P+  ++N                          P  +TYN +I  + K
Sbjct: 533 ETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITK 592

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
             + + A +LLR MVS G++PD  TY SL  GI   D
Sbjct: 593 AGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICRED 629



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 156/308 (50%), Gaps = 9/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      PD  T+ + ++ +C++G ++ A +++EQM ENG  P  VTYN++IDG CN+  
Sbjct: 398 MVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERC 457

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      +   G  P   T+N L+  L    +  +A+ ++  M      PD+ T+N 
Sbjct: 458 IDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNT 517

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C+ G   +A      M   G  P   TY  ++  L K  +  EA +L    +  G
Sbjct: 518 VITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSG-MTNG 576

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N +I      G +E A  LL+ M    + PD +TY +L +G CR+   + A 
Sbjct: 577 T-PDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAI 635

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+L +++  G+ PD  +F      YN ++ G C+N   D+A +    MVS G  PD++TY
Sbjct: 636 RMLCRLQDMGLSPDA-TF------YNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTY 688

Query: 301 FSLIEGIA 308
             L+E +A
Sbjct: 689 IILLEALA 696



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 153/318 (48%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G +PD+ TY   +  +C   R +E   +  +M  N   P  VT+NT++   C +G 
Sbjct: 258 LPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGL 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M + G +P   TY+ ++  L    ++ +A ++L  +   G  PD+I Y  
Sbjct: 318 VDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTT 377

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C     + A  L  EM+     P  +T+ ++I  L ++  +  A ++ E     G
Sbjct: 378 VLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENG 437

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N++IDG C    I+ A  LL  +      PD VT+NTL+ G C   + E+A 
Sbjct: 438 CNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAE 497

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
           +L+  M      PD  +F       N +I  LC  Q+G L  A E L+ M   G  P+ +
Sbjct: 498 QLMVNMMHSDCPPDATTF-------NTVITSLC--QKGLLLQAIETLKIMAENGCIPNQS 548

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  +++ +    K  E+
Sbjct: 549 TYNIVVDALLKAGKTQEA 566



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY S + G+C E  +++A  +L  ++  G  P  VT+NTL+ G C+   
Sbjct: 433 MSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDR 492

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      M+     P A+T+N +I  L  +  +++A + LK M E G +P+  TYNI
Sbjct: 493 WEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNI 552

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++   + G  ++A  L   M +    P ++TY ++I  ++K  +M EA  L    ++ G
Sbjct: 553 VVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKMEEALDLLRVMVSNG 610

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + + +L  G C     +RA  +L  +  M + PD   YN ++ G C+  + + A 
Sbjct: 611 LSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAI 670

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
                M   G  PD         TY  L++ L      D A++LL  + S G+
Sbjct: 671 DCFAHMVSSGCMPDES-------TYIILLEALAYECLLDEAKQLLVNLCSLGV 716



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 2/182 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY   V  + K G+ +EA ++L  M  NG  P  +TYNT+I      G 
Sbjct: 538 MAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMT-NG-TPDLITYNTVISNITKAGK 595

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      MV  G+ P   TY  L + +  E     A  ML  + + G+ PD+  YN 
Sbjct: 596 MEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYND 655

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G+C+      A      M+  G  P   TY  L+  L+ +  + EA QL  N  + G
Sbjct: 656 ILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLG 715

Query: 181 ML 182
           +L
Sbjct: 716 VL 717



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD+ TY S   G+C+E   + A RML ++++ GL P A  YN ++ G+C    
Sbjct: 606 MVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWR 665

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
            ++A      MV  G MP  STY +L+  L  E  + EA  +L  +   G++  S+
Sbjct: 666 TDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGVLDKSL 721



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 34/162 (20%)

Query: 185 IVMFNALIDGHCTNGNI---ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +V  N LI   C+ G +   ER F+ L     +      VTYNT+++G CR G++E+ARR
Sbjct: 98  VVPCNILIKRLCSGGRVADAERVFATLGASATV------VTYNTMVNGYCRAGRIEDARR 151

Query: 242 LLDQMK----------------RRGIKPD---------HISFNPTRLTYNALIQGLCKNQ 276
           L+  M                  RG  PD         H   +P+ +TY+ L+   CK  
Sbjct: 152 LISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKAS 211

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               A  LL EM +KG  PD  TY  LI  + +     E+ N
Sbjct: 212 GYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALN 253


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 146/258 (56%), Gaps = 1/258 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M   G +PD  TY + + G CK   L +AS M + +K   +  P  VTY ++I GYC  G
Sbjct: 232 MSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAG 291

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  A S  D+M++ GI PT  T+N+L+       +M+ A+++  +M   G  PD +T+ 
Sbjct: 292 KMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFT 351

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYCR G   + F L +EM  +G+ P   TY+ LI  L  +NR+++A +L     +K
Sbjct: 352 SLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK 411

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++P   M+N +IDG C  G +  A  +++EM++ K  PD++T+  L+ G C +G++ EA
Sbjct: 412 DIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEA 471

Query: 240 RRLLDQMKRRGIKPDHIS 257
             +  +M   G  PD I+
Sbjct: 472 VSIFHKMVAIGCSPDKIT 489



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 164/340 (48%), Gaps = 41/340 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ--------MKENGLVPTAV------ 46
           MKS GV P++   G  VS   ++G+L  A+ +L Q        M  N L+ T V      
Sbjct: 129 MKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVE 188

Query: 47  -------------------TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
                              T+N LI G C  G  E A      M   G  P   TYN LI
Sbjct: 189 DAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLI 248

Query: 88  HELLMERKMVEADDMLKEMGEKGIV-PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
                  ++ +A +M K++    +  PD +TY  +I+GYC+ G  ++A SL D+M+  GI
Sbjct: 249 QGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGI 308

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            PT +T+  L+   +K   M+ A+++    ++ G  PD+V F +LIDG+C  G + + F 
Sbjct: 309 YPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFR 368

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L +EM+   + P+  TY+ L++  C + ++ +AR LL Q+  + I P    +NP      
Sbjct: 369 LWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNP------ 422

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +I G CK  + + A  ++ EM  K   PD  T+  LI G
Sbjct: 423 -VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIG 461



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 125/244 (51%), Gaps = 1/244 (0%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD  TY S +SG CK G++ EAS +L+ M   G+ PT VT+N L+DGY   G +  A  
Sbjct: 274 SPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEE 333

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
            R +M+  G  P   T+  LI       ++ +   + +EM  +G+ P++ TY+ILIN  C
Sbjct: 334 IRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALC 393

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
                 KA  L  ++  K I P    Y  +I    K  ++ EA+ + E    K   PD +
Sbjct: 394 NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKI 453

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  LI GHC  G +  A S+  +M  +   PD++T ++L+    + G  +EA   L+Q+
Sbjct: 454 TFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQI 512

Query: 247 KRRG 250
            R+G
Sbjct: 513 ARKG 516



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 152/341 (44%), Gaps = 41/341 (12%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF----- 65
           +TY      +CK G  + A +M E MK +G+ P       L+  +  KG L  A      
Sbjct: 104 WTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ 163

Query: 66  SFRDE---MVKQGIMPT-------------------------ASTYNLLIHELLMERKMV 97
           SF  E   MV   ++ T                           T+N+LI  L    K  
Sbjct: 164 SFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAE 223

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSL 156
           +A ++L  M   G  PD +TYN LI G+C+     KA  +  ++    +  P ++TYTS+
Sbjct: 224 KALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSM 283

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I    K  +M EA  L ++ L  G+ P  V FN L+DG+   G +  A  +  +M     
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD VT+ +L+ G CR G+V +  RL ++M  RG+ P+         TY+ LI  LC   
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPN-------AFTYSILINALCNEN 396

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
               A ELL ++ SK I P    Y  +I+G     K  E++
Sbjct: 397 RLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAN 437



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  T+ S + G C+ G++ +  R+ E+M   G+ P A TY+ LI+  CN+  
Sbjct: 338 MISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENR 397

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     ++  + I+P    YN +I       K+ EA+ +++EM +K   PD IT+ I
Sbjct: 398 LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTI 457

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           LI G+C  G   +A S+  +M+  G  P  +T +SL+  L K     EA  L
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 41/207 (19%)

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL-------------- 191
           I+ +  TY  L   L K      A Q+FE   + G+ P+  +   L              
Sbjct: 99  IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFAT 158

Query: 192 --------IDGHCTNGN-----------IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
                   ++G C   N           +E A  L  E  R +   D  T+N L+ G C 
Sbjct: 159 ALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCG 218

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            GK E+A  LL  M   G +PD +       TYN LIQG CK+ E + A E+ +++ S  
Sbjct: 219 VGKAEKALELLGVMSGFGCEPDIV-------TYNTLIQGFCKSNELNKASEMFKDVKSGS 271

Query: 293 I-TPDDNTYFSLIEGIASVDKAAESSN 318
           + +PD  TY S+I G     K  E+S+
Sbjct: 272 VCSPDVVTYTSMISGYCKAGKMREASS 298


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 176/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +++ L     T   +++      
Sbjct: 37  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLK 96

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P +++YN
Sbjct: 97  YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYN 156

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G   + F L   M+  G+QP + TY+ LI  L K+++M +AD+LF+  L K
Sbjct: 157 TLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVK 216

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 217 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 276

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
             L+D M R+G+KPD I++                            RL    Y ALI G
Sbjct: 277 HDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISG 336

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ PD  TY  +I
Sbjct: 337 LCQEGRSVDAEKMLREMLSVGLNPDTGTYTMII 369



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+AV+YNTL++GY   G L+  
Sbjct: 112 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEG 171

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +AD++  EM  KG+VP+ +T+  LI+G
Sbjct: 172 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDG 231

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L ++   KG+ PD
Sbjct: 232 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPD 291

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G +  AF   K + +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 292 KITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLR 351

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+ PD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 352 EMLSVGLNPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 404

Query: 305 EG 306
            G
Sbjct: 405 NG 406



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A  + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 178 MLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ +M  KG+ PD ITY  
Sbjct: 238 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTT 297

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    AF     +I + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 298 LIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVG 357

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 358 LNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 169/317 (53%), Gaps = 11/317 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  TY S V G+C++G+++ A  M+ +MK  G+ P   T++ LI G+CN   ++ A
Sbjct: 76  GMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEA 135

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK--EMGEKGIV-PDSITYNIL 121
                E++       A + + LI  L  ER++ EA ++ +  EM E G   PD +TY  L
Sbjct: 136 LKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTAL 195

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G+C+ GN +KA  +   M  +   P ++TY+SL+  L K   + +A  LF    +KG 
Sbjct: 196 IDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGC 255

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P++V +  LI G C    ++ A  L+ EM       D V+YN L+ G CR G++EEA++
Sbjct: 256 VPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQ 315

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM-VSKGITPDDNTY 300
           L  +M  +   PD       R+TY  L++G C     + A  LL  M  + GI PD  TY
Sbjct: 316 LFKEMAAKSCLPD-------RITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTY 368

Query: 301 FSLIEGIASVDKAAESS 317
             ++ G +   +  E++
Sbjct: 369 SIVVAGYSRAKRFVEAA 385



 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 183/344 (53%), Gaps = 33/344 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKGNLEMA 64
           V P+  TY   V+G+CK     +A  +L++M++   + P  VTY+T+I+G+C +G ++ A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 65  FSFRDEMV-KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                EMV + G+ P   TY  ++  L  + KM  A +M++EM  KG+ PD  T++ LI 
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK---G 180
           G+C      +A  L+ E++    +   ++ ++LI  L ++ R+ EA +LF+    +    
Sbjct: 125 GWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGA 184

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V + ALIDG C +GN+E+A  +L  M+  K  P+ VTY++L+HG C+ G +++A 
Sbjct: 185 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 244

Query: 241 RLLDQMKRRGIKPDHISF-------------NPTRL---------------TYNALIQGL 272
            L  +M  +G  P+ +++             +  RL               +YNAL+ G 
Sbjct: 245 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGY 304

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C+    + A++L +EM +K   PD  TY  L+ G  +  +  E+
Sbjct: 305 CRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEA 348



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 168/338 (49%), Gaps = 47/338 (13%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD  TY + + G CK G LE+A +ML  M+    VP  VTY++L+ G C  G+L+ A  
Sbjct: 186 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALD 245

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               M  +G +P   TY  LIH L    K+  A  ++ EM       D+++YN L++GYC
Sbjct: 246 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYC 305

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-------------FVL------------- 160
           R G  ++A  L  EM  K   P  +TYT L+             F+L             
Sbjct: 306 RLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 365

Query: 161 ----------SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
                     S+  R +EA +  +  +A+ + P+ V +++LIDG C  G +  A  +LK 
Sbjct: 366 VTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKN 425

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           +D+    PD VTY  ++ G C   + EEA  LL++M  + ++       P+  T+N++I 
Sbjct: 426 VDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVE-------PSVGTFNSVIG 474

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            LC+  + D A +LL  M + G+ P   TY +L+EG +
Sbjct: 475 ALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFS 512



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 165/316 (52%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +GV+PD +T+ + ++G C   +++EA ++ +++  +     AV+ + LI G C +  
Sbjct: 107 MKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERR 166

Query: 61  LEMAFSFRDEMVKQ---GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +  A+    EM  +      P   TY  LI        + +A  ML  M  +  VP+ +T
Sbjct: 167 IGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVT 226

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y+ L++G C+ G+  +A  L   M  KG  P ++TYT+LI  L   +++  A  L +   
Sbjct: 227 YSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT 286

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           A     D V +NAL+DG+C  G IE A  L KEM      PD +TY  L+ G C   ++E
Sbjct: 287 ATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLE 346

Query: 238 EARRLLDQMKR-RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           EAR LL+ MK   GI PD +       TY+ ++ G  + +    A E ++EM+++ + P+
Sbjct: 347 EARFLLENMKTAAGIDPDVV-------TYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN 399

Query: 297 DNTYFSLIEGIASVDK 312
             TY SLI+G+    +
Sbjct: 400 AVTYSSLIDGLCKAGR 415



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 160/312 (51%), Gaps = 15/312 (4%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLV-PTAVTYNTLIDGYCNKGNLEMAF 65
           D+ +  + ++G+C+E R+ EA  + ++M  +E+G   P  VTY  LIDG+C  GNLE A 
Sbjct: 150 DAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAM 209

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M  +  +P   TY+ L+H L     + +A D+ + M  KG VP+ +TY  LI+G 
Sbjct: 210 KMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGL 269

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C       A  L DEM         ++Y +L+    +  R+ EA QLF+   AK  LPD 
Sbjct: 270 CAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDR 329

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           + +  L+ G C    +E A  LL+ M     + PD VTY+ ++ G  R  +  EA   + 
Sbjct: 330 ITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQ 389

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  R + P+ +       TY++LI GLCK    + A E+L+  V K   PD  TY  +I
Sbjct: 390 EMIARNVAPNAV-------TYSSLIDGLCKAGRVNHAMEVLKN-VDK---PDVVTYTIVI 438

Query: 305 EGIASVDKAAES 316
           EG+   D+  E+
Sbjct: 439 EGLCGTDRTEEA 450



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 167/317 (52%), Gaps = 5/317 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +     D+ +Y + + G C+ GR+EEA ++ ++M     +P  +TY  L+ G+CN   
Sbjct: 285 MTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASR 344

Query: 61  LEMA-FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           LE A F   +     GI P   TY++++      ++ VEA + ++EM  + + P+++TY+
Sbjct: 345 LEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYS 404

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G C+ G    A     E++    +P ++TYT +I  L   +R  EA  L E  + K
Sbjct: 405 SLIDGLCKAGRVNHAM----EVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNK 460

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + P +  FN++I   C  G+++ A+ LL  M    + P  VTY TL+ G  R G++E A
Sbjct: 461 RVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIA 520

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L + M+R+  K    +       ++ALI+GLCK +E D A  ++ E+ S+   P +  
Sbjct: 521 YELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEED 580

Query: 300 YFSLIEGIASVDKAAES 316
             ++++G+    +  E+
Sbjct: 581 CLAIVDGLLRAGRTEEA 597



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 141/274 (51%), Gaps = 33/274 (12%)

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIVPDSITYNILINGYCRCGN 130
           +++ + P   TYN++++ L   R   +A ++LKEM + K + PD +TY+ +ING+C+ G 
Sbjct: 1   MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60

Query: 131 AKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
             +A  +  EM+ + G+ P ++TYTS++  L +  +M  A ++      KG+ PD   F+
Sbjct: 61  MDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFS 120

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           ALI G C    ++ A  L KE+       D V+ + L+ G CR+ ++ EA  L  +M+ R
Sbjct: 121 ALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMR 180

Query: 250 ---GIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEG 278
                KPD +++                             P  +TY++L+ GLCK  + 
Sbjct: 181 EDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDL 240

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           D A +L R M SKG  P+  TY +LI G+ +  K
Sbjct: 241 DQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHK 274



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 13/255 (5%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  TY   V+G  +  R  EA+  +++M    + P AVTY++LIDG C  G +  A
Sbjct: 360 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHA 419

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                E++K    P   TY ++I  L    +  EA  +L+EM  K + P   T+N +I  
Sbjct: 420 M----EVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGA 475

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE--------NF 176
            CR G+  +A+ L   M   G++P M+TYT+L+   S+  RM  A +LFE        + 
Sbjct: 476 LCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSS 535

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
            A  ++P+   F+ALI G C    I++A ++++E+   +  P E     ++ G  R G+ 
Sbjct: 536 SAANLVPEQA-FSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRT 594

Query: 237 EEARRLLDQMKRRGI 251
           EEA +L++ + + G+
Sbjct: 595 EEAGKLINSISKVGL 609



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 28/181 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ V+P   T+ S +  +C+ G ++EA ++L  M  +GL P  VTY TL++G+   G 
Sbjct: 457 MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGR 516

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E+A+    E++++    ++S  NL                          VP+   ++ 
Sbjct: 517 MEIAYELF-EVMRRKAKKSSSAANL--------------------------VPEQ-AFSA 548

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+     KA ++ +E+  +  +P      +++  L +  R  EA +L  +    G
Sbjct: 549 LIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVG 608

Query: 181 M 181
           +
Sbjct: 609 L 609


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 165/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++  M+ + + P ++TY +LI+ L K+  + +A+ L +  + KG+ PD
Sbjct: 257 HCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +      LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------TGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP   TY+ LI  L K+++M +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC  G ++ A  + K M    + PD +TYNTL++G C++G +++A
Sbjct: 242 GLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 NDLIDEMVMKGLKPD-------KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 139/229 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C KG 
Sbjct: 203 MLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M+ Q ++P   TYN LI+ L  +  + +A+D++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 197

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 198 RLKSAMLASGVQPDXYTYSVLINGLCKESKMDDAN 232


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 176/338 (52%), Gaps = 31/338 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGR---LEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           +++ G+ P   TY + + G CK GR   +     +L++M E G+ P  VT+N L++GYC 
Sbjct: 211 IRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCK 270

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
             N   A    +EM +QGI  +  TY+ L+  L  E K+ E   ++ EM + G+VP+  T
Sbjct: 271 DSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLAT 330

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
            N ++NG+C+ G    A    D M  K ++P ++TYT L+    + ++M +A  + E   
Sbjct: 331 LNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMS 390

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P+  ++N LI G   NG+      LL EM    V  D VTYN L+   C +G+V 
Sbjct: 391 GKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVR 450

Query: 238 EARRLLDQMKRRGIKPDHISFNP------------------TRL----------TYNALI 269
           +A +LLD+M   G++P H+++N                   TR+          TYN  I
Sbjct: 451 KAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFI 510

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + LC+  + +   ELL EM+ KG+ P+  TY ++ EG+
Sbjct: 511 KCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGM 548



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 161/296 (54%), Gaps = 23/296 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+     TY + V G+C EG++EE  +++++MK+ GLVP   T N++++G+C KG 
Sbjct: 284 MKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGM 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  + D M ++ + P   TY +L+       KM +A  + + M  KG+ P++  YN 
Sbjct: 344 MTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNC 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+ R G+ +    L DEM  KG++  ++TY  LI  L  +  + +A +L +  L  G
Sbjct: 404 LIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + +N +I+G+C  GNI+ A+ +   M++ K   + VTYN  +   CR GK+EE  
Sbjct: 464 LEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETN 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            LL++M  +G+ P+ +       TY+ + +G                M+ KG TPD
Sbjct: 524 ELLNEMLEKGLVPNGV-------TYDTIKEG----------------MMEKGYTPD 556



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 10/304 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P +++    +S +    R++ A R  +      + P   T+N +I G C  G L  A  
Sbjct: 147 RPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGD 206

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLME---RKMVEADDMLKEMGEKGIVPDSITYNILIN 123
              ++   G+ P+  TYN +I          +M   D +LKEM E GI P+ +T+N+L+N
Sbjct: 207 VAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVN 266

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+  N   A  + +EM  +GI  +++TY++L++ L  + ++ E  +L +     G++P
Sbjct: 267 GYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVP 326

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++   N++++G C  G +  A   +  M++  V P+ VTY  L+ G  R  K+++A  + 
Sbjct: 327 NLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVK 386

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + M  +G++P+       R+ YN LI G  +N +      LL EM  KG+  D  TY  L
Sbjct: 387 EAMSGKGVRPN------ARI-YNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVL 439

Query: 304 IEGI 307
           I  +
Sbjct: 440 IGAL 443



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
           H   +P+  +   L+  L    R+  A++ F+  L + + PD+  FN +I G C  G + 
Sbjct: 143 HPRHRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLR 202

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRC---RQGKVEEARRLLDQMKRRGIKPDHISFN 259
           +A  + K++    + P  VTYNT++ G C   R G++     LL +M   GI P+ ++F 
Sbjct: 203 KAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTF- 261

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
                 N L+ G CK+     A  +  EM  +GI     TY +L+ G+ S  K  E
Sbjct: 262 ------NVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEE 311


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 171/309 (55%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P   +Y + + G C++G ++ A+ +  +M E GL P  +TY+ L+DGY  KG+
Sbjct: 459 MVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGD 518

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E AF   D M  + I P+  T N++I+ L    +  E+ D LK++ ++G +P  +TYN 
Sbjct: 519 TEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNC 578

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G+   A +++ EM   G+ P + TYT+LI    K N M  A ++ +    KG
Sbjct: 579 IIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKG 638

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+ ++ ALIDG C  G++  A  LL E+  + + P++V Y++++ G  +   +E A 
Sbjct: 639 IELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAAL 698

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   GI  D          Y  LI GL K  +   A EL  EM++KGI PD  TY
Sbjct: 699 HLHKRMINEGIPCD-------LQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITY 751

Query: 301 FSLIEGIAS 309
             LI G+ +
Sbjct: 752 SVLIHGLCN 760



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 154/276 (55%), Gaps = 9/276 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   TY   + G  KEG +  A  +  +M + G+ P   TY  LI+G+C   N+++A
Sbjct: 568 GFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLA 627

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEM  +GI    + Y  LI     +  MV A  +L E+ E G+ P+ + Y+ +I+G
Sbjct: 628 LKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISG 687

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + +  N + A  LH  MI++GI   +  YT+LI  L K+ +++ A +L+   LAKG++PD
Sbjct: 688 FRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPD 747

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ ++ LI G C  G +E A  +L++MDR  + P    YNTL+ G  ++G ++EA RL +
Sbjct: 748 LITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHN 807

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           +M  +G+ PD         TY+ L+ G  K ++G+L
Sbjct: 808 EMLDKGLVPDDT-------TYDILVNG--KVKDGNL 834



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 166/307 (54%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++ + P  +   S + G  K    EEAS++ ++    G +    TYN+L+   C +G 
Sbjct: 390 MKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACG-IANVFTYNSLLSWLCKEGK 448

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  ++MV++G+ P+  +YN +I     +  M  A+ +  EM EKG+ P+ ITY++
Sbjct: 449 MSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSV 508

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY + G+ + AF L+D M  + I P+  T   +I  L K  R  E+    +  + +G
Sbjct: 509 LMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEG 568

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N +IDG    G++  A ++  EM ++ V P+  TY  L++G C+   ++ A 
Sbjct: 569 FIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLAL 628

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +++D+MK +GI+ D          Y ALI G C+  +   A +LL E+   G++P+   Y
Sbjct: 629 KVMDEMKNKGIELDVT-------VYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVY 681

Query: 301 FSLIEGI 307
            S+I G 
Sbjct: 682 SSMISGF 688



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 165/323 (51%), Gaps = 20/323 (6%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK-GN 60
           K++GV+ D+  Y   +  +CK+     A  +L +M++ G VP  V +  +I G C K G 
Sbjct: 251 KNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVI-GVCMKQGK 309

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-----DMLKEMGEKGIVPDS 115
           +  A   + EM+  G        N+++   LM+    + D     ++  +M E GI P++
Sbjct: 310 MLEAVKVKGEMLSCG-----KPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNN 364

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           +TY ++I   C+ GN  KA+ ++++M +K I PT+    SLI    K     EA +LF+ 
Sbjct: 365 VTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDE 424

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            +A G + ++  +N+L+   C  G +  A S+ ++M R  V P  V+YN ++ G C+QG 
Sbjct: 425 AVACG-IANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGD 483

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           ++ A  +  +M  +G+KP+ I       TY+ L+ G  K  + + A  L   M  + I P
Sbjct: 484 MDSANGVFVEMLEKGLKPNLI-------TYSVLMDGYFKKGDTEYAFGLYDRMRGENIAP 536

Query: 296 DDNTYFSLIEGIASVDKAAESSN 318
            D T   +I G+    + +ES +
Sbjct: 537 SDFTCNIIINGLCKAGRTSESQD 559



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+GV+ D  T    +    +EG+LEEA     + K  G+   A  Y+ +I+  C K +
Sbjct: 215 MASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPD 274

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM  +G +P    +  +I   + + KM+EA  +  EM   G   + +    
Sbjct: 275 SVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATT 334

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GYC+ G+   A  L D+M   GI P  +TY  +I    K   M +A +++     K 
Sbjct: 335 LMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKD 394

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +   N+LI G+    + E A  L  E     +  +  TYN+L+   C++GK+ EA 
Sbjct: 395 ISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI-ANVFTYNSLLSWLCKEGKMSEAC 453

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + ++M R+G++P  +S       YN +I G C+  + D A  +  EM+ KG+ P+  TY
Sbjct: 454 SIWEKMVRKGVRPSVVS-------YNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITY 506

Query: 301 FSLIEG 306
             L++G
Sbjct: 507 SVLMDG 512



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 116/201 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G++ D   Y + + G C++G +  AS++L +++E GL P  V Y+++I G+    N
Sbjct: 634 MKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQN 693

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      M+ +GI      Y  LI  LL E K++ A ++  EM  KGI+PD ITY++
Sbjct: 694 MEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSV 753

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A  + ++M  K + PT+  Y +LI    K+  + EA +L    L KG
Sbjct: 754 LIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKG 813

Query: 181 MLPDIVMFNALIDGHCTNGNI 201
           ++PD   ++ L++G   +GN+
Sbjct: 814 LVPDDTTYDILVNGKVKDGNL 834



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 151/310 (48%), Gaps = 8/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           + DS  +   ++   K  R+ +A      + E  +VP     N  +        +  A  
Sbjct: 151 ESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARD 210

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             ++M  +G+    +T +++I   + E K+ EA+   +E   KG+  D+  Y+I+I   C
Sbjct: 211 VYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVC 270

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +  ++  A  L  EM  KG  P  + +T +I V  KQ +M+EA ++    L+ G   ++V
Sbjct: 271 KKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVV 330

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +   L+ G+C  G+++ A  L  +M+   + P+ VTY  ++   C+ G +++A  + +QM
Sbjct: 331 VATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQM 390

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           K + I       +PT    N+LI+G  K +  + A +L  E V+ GI  +  TY SL+  
Sbjct: 391 KNKDI-------SPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIA-NVFTYNSLLSW 442

Query: 307 IASVDKAAES 316
           +    K +E+
Sbjct: 443 LCKEGKMSEA 452



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 13/294 (4%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
            RL E+SR L+   ++ +      +N L++ Y     +  A    + ++++ I+P  +  
Sbjct: 139 ARLIESSRRLDFESDSRV------FNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVM 192

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N+ + EL+    + EA D+  +M  KG+  D  T +++I    R G  ++A     E  +
Sbjct: 193 NIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKN 252

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           KG++     Y+ +I  + K+   + A  L      KG +P  V+F  +I      G +  
Sbjct: 253 KGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLE 312

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  +  EM       + V   TLM G C+QG ++ A  L D+M   GI P+++       
Sbjct: 313 AVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNV------- 365

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           TY  +I+  CKN   D A E+  +M +K I+P      SLI G        E+S
Sbjct: 366 TYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEAS 419


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 167/314 (53%), Gaps = 7/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S G +P+ +TY + ++G CKE +L  A  +L +M+E GLVP   TY TLIDG+C  GN
Sbjct: 356 VRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGN 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+   D M K+G  P   TYN +I  L  +  + EA  +L ++   G+  D +TY I
Sbjct: 416 FVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTI 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +CR  +  ++    ++M+  G  P + +YT+LI    +Q +M E+++LFE  ++ G
Sbjct: 476 LMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLG 535

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + ++I G+C  GN   A  L + M      PD +TY  L+ G C++ K+++AR
Sbjct: 536 LIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDAR 595

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D M  +G+ P  +    TRLT   L    CK  +   A  +L  +  +      NT 
Sbjct: 596 NLYDAMMDKGLSPCEV----TRLT---LAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTL 648

Query: 301 FSLIEGIASVDKAA 314
              +     +D AA
Sbjct: 649 VRKLCSEGKLDMAA 662



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 167/335 (49%), Gaps = 29/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PD  ++   V   C  GR+ EA + L  M E G +    T   +ID +C KG 
Sbjct: 215 MCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGY 274

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +     +  +MV+ G+ P    +  LI+ L  +  + +A ++L+EM  +G  P+  T+  
Sbjct: 275 VNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTT 334

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C+ G  +KAF L  +++   G +P + TYT++I    K++++  A+ L      +
Sbjct: 335 LIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQ 394

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+   +  LIDGHC  GN  RA+ L+  M +    P+  TYN ++ G C++G ++EA
Sbjct: 395 GLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEA 454

Query: 240 RRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQG 271
            RLL+++   G++ D ++                            F P   +Y  LI  
Sbjct: 455 YRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISX 514

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            C+ ++   +E L  E VS G+ P   TY S+I G
Sbjct: 515 FCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICG 549



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 162/319 (50%), Gaps = 8/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M  RG +P+ YT+ + + G+CK+G  E+A R+ L+ ++ +G  P   TY  +I+GYC + 
Sbjct: 320 MVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKED 379

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A      M +QG++P  +TY  LI         V A +++  MG++G  P+  TYN
Sbjct: 380 KLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYN 439

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+ G+  +A+ L +++   G+Q   +TYT L+ V  +Q     +   F   L  
Sbjct: 440 AIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKV 499

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  +  LI   C    ++ +  L +E   + + P + TY +++ G CR G    A
Sbjct: 500 GFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLA 559

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L  +M   G  PD I       TY ALI GLCK  + D A  L   M+ KG++P + T
Sbjct: 560 VKLFQRMSNHGCAPDSI-------TYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVT 612

Query: 300 YFSLIEGIASVDKAAESSN 318
             +L       D ++ + N
Sbjct: 613 RLTLAYEYCKKDDSSTAIN 631



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 161/301 (53%), Gaps = 11/301 (3%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V    + G+L+EA  M+ +M+  GLV +  T N ++D     G +E+A +   EM ++G+
Sbjct: 161 VMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGV 220

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
            P   ++ L++       +++EA+  L  M E+G + D+ T  ++I+ +C+ G   +   
Sbjct: 221 SPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVG 280

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
              +M+  G+ P ++ +T+LI  L KQ  + +A +L E  + +G  P++     LIDG C
Sbjct: 281 YFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLC 340

Query: 197 TNGNIERAFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
             G  E+AF L  ++ R   + P+  TY  +++G C++ K+  A  LL +M+ +G+ P+ 
Sbjct: 341 KKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN- 399

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDK 312
                   TY  LI G CK      A EL+  M  +G +P+  TY ++I+G+    S+D+
Sbjct: 400 ------TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDE 453

Query: 313 A 313
           A
Sbjct: 454 A 454


>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 376

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 162/295 (54%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L    K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+   ++KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I P
Sbjct: 325 MIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIVP 372



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 153/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC + + + A +L  +++SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGK 284



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 113/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+ + Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALMIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+ P ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVPTKIT 376



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHV--------YNTLINGLAGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 172/330 (52%), Gaps = 42/330 (12%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V  + YTY   ++G  K G  ++   + E+MK  G+VP   TYN++I   CN G L  AF
Sbjct: 217 VVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAF 276

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM ++G+     TYN LI  L  ER+++EA+ ++  M   G+ P+ I+YN LI+GY
Sbjct: 277 ELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGY 336

Query: 126 CRCGNAKKAFSLHD-----------------------------------EMIHKGIQPTM 150
           C  GN  KA SL +                                   EM  +G+ P+ 
Sbjct: 337 CSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSK 396

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           +TYT L+  L + + + +A Q++ +    G++ DI ++  LI G C  G+++ A  L K 
Sbjct: 397 VTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKS 456

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           +D M + P++V YNT+++G C++G    A RLL +M   G+ P+  S+N T       I 
Sbjct: 457 LDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNST-------IX 509

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LCK+++   AE LL++M+  G+ P  + +
Sbjct: 510 ILCKDEKWTEAEVLLKDMIELGLKPSISIW 539



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 145/259 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RGV  +  TY + + G+C+E R+ EA R++ +MK +GL P  ++YNTLIDGYC+ GN
Sbjct: 282 MRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  ++M   G  P+ +TYN+LI      +      DM++EM  +G+ P  +TY I
Sbjct: 342 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTI 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++   R  N +KAF ++  M   G+   +  Y  LI  L     M EA +LF++     
Sbjct: 402 LMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMH 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++N +I G+C  G+  RA  LLKEM    + P+  +YN+ +   C+  K  EA 
Sbjct: 462 LKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAE 521

Query: 241 RLLDQMKRRGIKPDHISFN 259
            LL  M   G+KP    +N
Sbjct: 522 VLLKDMIELGLKPSISIWN 540



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 164/315 (52%), Gaps = 13/315 (4%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+ D Y++G  + G C+ G L++   +L QM+E GL P  V Y TLIDG C  G++E   
Sbjct: 147 VKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGK 206

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +M +  ++    TY +LI+         +  ++ ++M   GIVP+  TYN +I   
Sbjct: 207 QLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI--- 263

Query: 126 CRCGNAKK---AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           CRC N  K   AF L DEM  +G+   ++TY +LI  L ++ R++EA++L       G+ 
Sbjct: 264 CRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS 323

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+++ +N LIDG+C+ GN+++A SL  +M      P   TYN L+ G            +
Sbjct: 324 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 383

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           + +M+ RG+       +P+++TY  L+  L ++   + A ++   M   G+  D   Y  
Sbjct: 384 VREMEARGL-------SPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGV 436

Query: 303 LIEGIASVDKAAESS 317
           LI G+  V    E+S
Sbjct: 437 LIHGLCVVGDMKEAS 451



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 142/319 (44%), Gaps = 41/319 (12%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTL----------------------------------I 52
           E+A     QM   GLVP + T+N L                                  I
Sbjct: 99  EQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMI 158

Query: 53  DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
            G C  G L+  F    +M + G+ P    Y  LI        +     +  +MGE  +V
Sbjct: 159 KGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVV 218

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
            +  TY +LING+ + G  K    L+++M   GI P + TY S+I       ++  A +L
Sbjct: 219 ANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFEL 278

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           F+    +G+  ++V +N LI G C    +  A  L+  M R  + P+ ++YNTL+ G C 
Sbjct: 279 FDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCS 338

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            G +++A  L +QMK  G        +P+  TYN LI G  + +      +++REM ++G
Sbjct: 339 IGNLDKASSLFNQMKSSGQ-------SPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391

Query: 293 ITPDDNTYFSLIEGIASVD 311
           ++P   TY  L++ +   D
Sbjct: 392 LSPSKVTYTILMDALVRSD 410



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 98/191 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G  P   TY   ++G  +       + M+ +M+  GL P+ VTY  L+D      N
Sbjct: 352 MKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDN 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF     M K G++     Y +LIH L +   M EA  + K + E  + P+ + YN 
Sbjct: 412 IEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNT 471

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G++ +A  L  EM   G+ P + +Y S I +L K  +  EA+ L ++ +  G
Sbjct: 472 MIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELG 531

Query: 181 MLPDIVMFNAL 191
           + P I ++N +
Sbjct: 532 LKPSISIWNMI 542



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 138/281 (49%), Gaps = 14/281 (4%)

Query: 43  PTAV-TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           PT V  +  +I+ +      E A  + ++M+ +G++P ++T+N L+  L+      +A  
Sbjct: 79  PTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWR 138

Query: 102 MLKEMGEKGIVP-DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
           +  E   KG V  D  ++ I+I G C  G   K F +  +M   G+ P ++ YT+LI   
Sbjct: 139 VFNE--TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 196

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            K   +    QLF       ++ +   +  LI+G    G  +    L ++M    + P+ 
Sbjct: 197 CKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNV 256

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TYN+++   C  GK+  A  L D+M+ RG+  + +       TYN LI GLC+ +    
Sbjct: 257 YTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVV-------TYNTLIGGLCQERRVLE 309

Query: 281 AEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSN 318
           AE L+  M   G++P+  +Y +LI+G   I ++DKA+   N
Sbjct: 310 AERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFN 350


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 147/258 (56%), Gaps = 1/258 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           M   G  PD  TY + + G CK   L++A+ M + +K + G  P  VTY ++I GYC  G
Sbjct: 232 MSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAG 291

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A    D+M++ GI PT  T+N+L+       +M  A+++  +M   G  PD +T+ 
Sbjct: 292 KMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFT 351

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYCR G   + F L +EM  +G+ P   TY+ LI  L K+NR+++A +L     +K
Sbjct: 352 SLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASK 411

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++P   M+N +IDG C  G +  A  +++EM++ K  PD++T+  L+ G C +G++ EA
Sbjct: 412 DIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEA 471

Query: 240 RRLLDQMKRRGIKPDHIS 257
             +  +M   G  PD I+
Sbjct: 472 VSIFHKMVAIGCSPDKIT 489



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 157/309 (50%), Gaps = 8/309 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS-F 67
           D+ T+   + G+C  G+ E+A  +L  M   G +P  VTYNTLI G+C    L+ A   F
Sbjct: 205 DTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMF 264

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            D     G  P   TY  +I       KM EA  +L +M   GI P ++T+N+L++GY +
Sbjct: 265 DDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAK 324

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  +  +MI  G  P ++T+TSLI    +  ++ +  +L+E   A+GM P+   
Sbjct: 325 AGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFT 384

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ LI+  C    + +A  LL ++    + P    YN ++ G C+ GKV EA  ++++M+
Sbjct: 385 YSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEME 444

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           ++  KPD       ++T+  LI G C       A  +  +MV+ G +PD  T  SL+  +
Sbjct: 445 KKKCKPD-------KITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCL 497

Query: 308 ASVDKAAES 316
                A E+
Sbjct: 498 LKAGMAKEA 506



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 158/317 (49%), Gaps = 10/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G+ P+S   G  VS   ++G+L  A+ +L Q  E  +    +  N+L++       
Sbjct: 129 MKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYE--VEGCCMVVNSLLNTLVKLDR 186

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +E ++        T+N+LI  L    K  +A ++L  M   G +PD +TYN 
Sbjct: 187 VEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNT 246

Query: 121 LINGYCRCGNAKKAFSLHDEM-IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI G+C+    KKA  + D++    G  P ++TYTS+I    K  +M EA  L ++ L  
Sbjct: 247 LIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRL 306

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P  V FN L+DG+   G +  A  +  +M      PD VT+ +L+ G CR G+V + 
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQG 366

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL ++M  RG+ P+         TY+ LI  LCK      A ELL ++ SK I P    
Sbjct: 367 FRLWEEMNARGMFPN-------AFTYSILINALCKENRLLKARELLGQLASKDIIPQPFM 419

Query: 300 YFSLIEGIASVDKAAES 316
           Y  +I+G     K  E+
Sbjct: 420 YNPVIDGFCKAGKVNEA 436



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 127/248 (51%), Gaps = 1/248 (0%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G  PD  TY S +SG CK G+++EAS +L+ M   G+ PT VT+N L+DGY   G + 
Sbjct: 270 SSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMH 329

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A   R +M+  G  P   T+  LI       ++ +   + +EM  +G+ P++ TY+ILI
Sbjct: 330 TAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILI 389

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           N  C+     KA  L  ++  K I P    Y  +I    K  ++ EA  + E    K   
Sbjct: 390 NALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCK 449

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD + F  LI GHC  G +  A S+  +M  +   PD++T ++L+    + G  +EA   
Sbjct: 450 PDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH- 508

Query: 243 LDQMKRRG 250
           L+Q+  +G
Sbjct: 509 LNQIAHKG 516



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 122/284 (42%), Gaps = 32/284 (11%)

Query: 60  NLEMAFSFRD-EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           N  + F F +    K  I  +  TYNLL   L        A  M + M   GI P+S   
Sbjct: 82  NPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLL 141

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             L++ +   G    A +L  +     ++   +   SL+  L K +R+ +A +LFE  L 
Sbjct: 142 GFLVSSFAEKGKLHCATALLLQSYE--VEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLR 199

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
                D   FN LI G C  G  E+A  LL  M      PD VTYNTL+ G C+  ++++
Sbjct: 200 FQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKK 259

Query: 239 ARRLLDQMK-RRGIKPDHISFN----------------------------PTRLTYNALI 269
           A  + D +K   G  PD +++                             PT +T+N L+
Sbjct: 260 ANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLV 319

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
            G  K  E   AEE+  +M+S G  PD  T+ SLI+G   V + 
Sbjct: 320 DGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQV 363


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 177/320 (55%), Gaps = 9/320 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P+ ++Y   + G+C E R +EA  +L+ M ++G    P  V+Y T+I+G+  +
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G+L+ A+    EM+ +GI+P   TY+ +I  L   + M +A ++L  M + G++P+  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++GYC  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P+I  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +QGKV++
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQ 392

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  +  +M+++G+ PD +       TY  +I  LCK+   + A     +M+ + ++P + 
Sbjct: 393 AMLVFSKMRQQGLNPDTV-------TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 299 TYFSLIEGIASVDKAAESSN 318
            Y SLI  +   DK  ++ +
Sbjct: 446 VYNSLIHSLCIFDKWDKAKD 465



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 166/317 (52%), Gaps = 16/317 (5%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P+  TYG  +   C  GRL+     L  + + G    A+ +  L+ G C   + +  M
Sbjct: 87  VTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 146

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNIL 121
               R  M + G +P   +YN+L+  L  E +  EA ++L+ M + G    PD ++Y  +
Sbjct: 147 DIVLR-RMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING+ + G+  KA+  + EM+ +GI P ++TY+S+I  L K   M +A ++  + +  G+
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P+   +N+++ G+C++G  + A   LK+M    V PD VTYN+LM   C+ G+  EAR+
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNT 299
           + D M +RG+KP+         TY  L+QG     +G L E   LL  MV  GI P+   
Sbjct: 326 MFDSMTKRGLKPEIT-------TYGTLLQGY--ATKGALVEMHGLLDLMVRNGIHPNHYV 376

Query: 300 YFSLIEGIASVDKAAES 316
           +  LI   A   K  ++
Sbjct: 377 FSILICAYAKQGKVDQA 393



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 91/173 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV+PD  TY S +  +CK GR  EA +M + M + GL P   TY TL+ GY  KG 
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++LI     + K+ +A  +  +M ++G+ PD++TY  
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           +I   C+ G  + A    ++MI + + P  + Y SLI  L   ++  +A   F
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYF 467



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 10/217 (4%)

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           +   G   + P+  TY ILI   C  G     F+    +I KG +   + +T L+  L  
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 163 QNRMIEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPD 219
             R  +A D +       G +P++  +N L+ G C     + A  LL+ M  D     PD
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPD 198

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            V+Y T+++G  ++G +++A     +M  RGI P+ +       TY+++I  LCK Q  D
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVV-------TYSSIIAALCKAQAMD 251

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A E+L  MV  G+ P+  TY S++ G  S  +  E+
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 13/259 (5%)

Query: 64  AFSFRDEMVKQG---IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           A S  + M + G   + P   TY +LI       ++      L  + +KG   D+I +  
Sbjct: 72  AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131

Query: 121 LINGYCRCGNAKKAFSL-HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           L+ G C       A  +    M   G  P + +Y  L+  L  +NR  EA +L +     
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191

Query: 180 G--MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           G    PD+V +  +I+G    G++++A+    EM    + P+ VTY++++   C+   ++
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  +L  M + G+ P+         TYN+++ G C + +   A   L++M S G+ PD 
Sbjct: 252 KAMEVLTSMVKNGVMPNC-------RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 298 NTYFSLIEGIASVDKAAES 316
            TY SL++ +    +  E+
Sbjct: 305 VTYNSLMDYLCKNGRCTEA 323


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 177/345 (51%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G       Y + V+ +CK G  E A   + ++ + G +  +    +L+ G+C   N
Sbjct: 186 MEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLN 245

Query: 61  LEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L  A    D M ++G   P + +Y++LIH L    ++ EA  +  +MGEKG  P + TY 
Sbjct: 246 LRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYT 305

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LI   C  G   KAF+L DEMI +G +P + TYT LI  L +  ++ EA+ +    +  
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P ++ +NALI+G+C +G +  AF LL  M++    P+  T+N LM G CR GK  +A
Sbjct: 366 GIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKA 425

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             LL +M   G+ PD +S+N                            P  LT+ A+I  
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINA 485

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            CK  + D+A   L  M+ KGI+ D+ T  +LI+G+ +V K  ++
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDA 530



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 173/354 (48%), Gaps = 45/354 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG +P+ +TY   + G+C++G++EEA+ +  +M ++G+ P+ +TYN LI+GYC  G 
Sbjct: 327 MIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGR 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M K+   P   T+N L+  L    K  +A  +LK M + G+ PD ++YN+
Sbjct: 387 VVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNV 446

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR G+   A+ L   M    ++P  LT+T++I    KQ +   A       L KG
Sbjct: 447 LIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK------------------------- 215
           +  D V    LIDG C  G    A  +L+ + +M+                         
Sbjct: 507 ISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEEL 566

Query: 216 ----------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                     + P  VTY TL+ G  R G +  + R+L+ MK  G  P+          Y
Sbjct: 567 AMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPN-------VYPY 619

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAES 316
             +I GLC+    + AE+LL  M   G++P+  TY  +++G  +   +D+A E+
Sbjct: 620 TIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 161/318 (50%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R  +P+  T+   + G+C+ G+  +A  +L++M +NGL P  V+YN LIDG C +G+
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGH 456

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A+     M    + P   T+  +I+    + K   A   L  M  KGI  D +T   
Sbjct: 457 MNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTT 516

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A  + + ++   +  T  +   ++ +LSK  ++ E   +       G
Sbjct: 517 LIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLG 576

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P +V +  L+DG   +G+I  +F +L+ M      P+   Y  +++G C+ G+VEEA 
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAE 636

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  M+  G+ P+H+       TY  +++G   N + D A E +R MV +G   +D  Y
Sbjct: 637 KLLSAMQDSGVSPNHV-------TYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIY 689

Query: 301 FSLIEGIASVDKAAESSN 318
            SL+ G     K    ++
Sbjct: 690 SSLLRGFVLSQKGIRETD 707



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 159/344 (46%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QP + TY   +  +C  G +++A  + ++M   G  P   TY  LIDG C  G 
Sbjct: 292 MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGK 351

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     +MVK GI P+  TYN LI+    + ++V A ++L  M ++   P+  T+N 
Sbjct: 352 IEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNE 411

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G CR G   KA  L   M+  G+ P +++Y  LI  L ++  M  A +L  +  +  
Sbjct: 412 LMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFD 471

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + F A+I+  C  G  + A + L  M R  +  DEVT  TL+ G C  GK  +A 
Sbjct: 472 LEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDAL 531

Query: 241 RLLDQM-KRRGIKPDH---------------------------ISFNPTRLTYNALIQGL 272
            +L+ + K R +   H                           +   P+ +TY  L+ GL
Sbjct: 532 FILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGL 591

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            ++ +   +  +L  M   G  P+   Y  +I G+    +  E+
Sbjct: 592 IRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 153/347 (44%), Gaps = 48/347 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  ++PD  T+ + ++  CK+G+ + AS  L  M   G+    VT  TLIDG CN G 
Sbjct: 467 MNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGK 526

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    + +VK  ++ T  + N+++  L    K+ E   ML ++ + G+VP  +TY  
Sbjct: 527 TRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTT 586

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G  R G+   +F + + M   G  P +  YT +I  L +  R+ EA++L       G
Sbjct: 587 LVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSG 646

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG----------- 229
           + P+ V +  ++ G+  NG ++RA   ++ M       ++  Y++L+ G           
Sbjct: 647 VSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRET 706

Query: 230 -----------------------------RCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
                                         C++G+ +E+  L+  + + G+  +      
Sbjct: 707 DPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEK----- 761

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                + +++  C  ++     EL+  ++  G  P   ++  +I+G+
Sbjct: 762 ---AIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGL 805



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 10/224 (4%)

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           K++   D L+E+   G   +   Y+ L+    +      A+  +  M   G    M+ Y 
Sbjct: 142 KLISCFDELREVS--GFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYR 199

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           +++  L K      A+      L  G L D  +  +L+ G C   N+  A  +   M R 
Sbjct: 200 TIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSRE 259

Query: 215 -KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
               P+ V+Y+ L+HG C  G++EEA  L DQM  +G +P       TR TY  LI+ LC
Sbjct: 260 GTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPS------TR-TYTVLIKALC 312

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
                D A  L  EM+++G  P+ +TY  LI+G+    K  E++
Sbjct: 313 DRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEAN 356



 Score = 37.4 bits (85), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            V+ +CKEGR +E++ +++ + ++G V      + +++ YC+K            ++K G
Sbjct: 732 LVTRLCKEGRTDESNGLVQTILKSG-VFLEKAIDIIMESYCSKKKHTKCVELITLVLKSG 790

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKE-MGEKGIVPDS 115
            +P+  ++ L+I  L  E     A +++ E +   G+V  S
Sbjct: 791 FVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNGVVEKS 831


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 163/313 (52%), Gaps = 8/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P+   + S ++G+CK G +++A  MLE+M + G  P   T+  LIDG C KG  E A
Sbjct: 296 GLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKA 355

Query: 65  FSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           F    ++V+     P   TY  +IH    E K+  A+ +L  M E+G+VP++ TY  LI+
Sbjct: 356 FRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLID 415

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+ + GN +KA+ L D M  +G    + TY + I  L K+ R +EA +L +     G+  
Sbjct: 416 GHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQA 475

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +  LI   C   +   A     +M +  V PD  TYNTL+    RQ ++EE+ +L 
Sbjct: 476 DTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLF 535

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +    G+ P       T+ TY ++I G C+++   LA +    M   G TPD  TY +L
Sbjct: 536 AEAVGLGLVP-------TKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGAL 588

Query: 304 IEGIASVDKAAES 316
           I G+    K  E+
Sbjct: 589 ISGLCKESKLDEA 601



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S   +P+ +TY S + G CKE +L  A  +L +MKE GLVP   TY  LIDG+   GN
Sbjct: 363 VRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGN 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A+   D M K+G      TYN  I  L  + + +EA  +LK+    G+  D++TY I
Sbjct: 423 FEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTI 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR  + ++A     +M   G+QP M TY +LI   S+Q RM E+++LF   +  G
Sbjct: 483 LISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLG 542

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + ++I G+C + N+  A      M      PD +TY  L+ G C++ K++EA 
Sbjct: 543 LVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEAC 602

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           +L + M  +G+ P  +    TRLT   L    CK  +   A  +L  +  K      NT
Sbjct: 603 QLYEAMVDKGLSPCEV----TRLT---LAYEYCKQDDSATAMVILERLDKKLWIRTVNT 654



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 160/317 (50%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RGV PDS +Y       C+ GR+ +  R L+ M   G V    T   +I  +C KG 
Sbjct: 222 MRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGF 281

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               F + D+ V+ G+ P    +  LI+ L     + +A +ML+EM +KG  P+  T+  
Sbjct: 282 ASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTA 341

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C+ G  +KAF L  +++     +P + TYTS+I    K++++  A+ L      +
Sbjct: 342 LIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQ 401

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+   +  LIDGH   GN E+A+ L+  M +     +  TYN  +   C++G+  EA
Sbjct: 402 GLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEA 461

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +LL +  R G++ D +       TY  LI  LC+  +   A     +M   G+ PD +T
Sbjct: 462 CKLLKKGFRLGLQADTV-------TYTILISELCRRADTREALVFFSKMFKAGVQPDMHT 514

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI   +   +  ES
Sbjct: 515 YNTLIAAFSRQRRMEES 531



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 155/294 (52%), Gaps = 8/294 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G+ +EA  M+ +M+ +GLV T  T N +       G +  A +  DEM  +G+ P + +Y
Sbjct: 175 GKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSVSY 234

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            L+        ++ + D  LK+M  +G V D+ T  ++I+ +C  G A + F   D+ + 
Sbjct: 235 KLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWVE 294

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G++P ++ +TSLI  L K+  + +A ++ E  + KG  P++    ALIDG C  G  E+
Sbjct: 295 LGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEK 354

Query: 204 AFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           AF L  ++ R   + P+  TY +++HG C++ K+  A  LL +MK +G+ P+      T+
Sbjct: 355 AFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPN------TK 408

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY  LI G  K    + A EL+  M  +G + +  TY + I+ +    +  E+
Sbjct: 409 -TYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEA 461



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 7/190 (3%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + ++  +   G  ++A ++  EM + G+  T+ T   +  V  +   +  A+ +F+    
Sbjct: 165 DCMVRVFAEIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRV 224

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ PD V +  +   +C  G I      LK+M R     D  T   ++   C +G    
Sbjct: 225 RGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASR 284

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                D+    G+KP+ I+F        +LI GLCK      A E+L EMV KG  P+  
Sbjct: 285 VFWYFDKWVELGLKPNLINF-------TSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVY 337

Query: 299 TYFSLIEGIA 308
           T+ +LI+G+ 
Sbjct: 338 THTALIDGLC 347



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDS TYG+ +SG+CKE +L+EA ++ E M + GL P  VT  TL   YC + +
Sbjct: 573 MSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDD 632

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    + + K+  + T +T   LI +L  ERK+  A     ++ +K    D +T   
Sbjct: 633 SATAMVILERLDKKLWIRTVNT---LIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTLTA 689

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI 146
                C   N     S   E I KGI
Sbjct: 690 FTTA-CYESNKYALVSDLSERISKGI 714


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 171/337 (50%), Gaps = 28/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD   Y + + G+CK+G  E A+ +L +M   GL P  V YNT++ G C+   
Sbjct: 274 MPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAER 333

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EM ++       T+N+L+        +    ++L++M E G +PD ITY  
Sbjct: 334 WEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTT 393

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G   +A  L   M   G +P  ++YT ++  L +  R ++A +L  + + +G
Sbjct: 394 VINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG 453

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+ V FN LI+  C  G +E+A  LLK+M      PD ++Y+T++ G  + GK EEA 
Sbjct: 454 CLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 513

Query: 241 RLLDQMKRRGIKPDHISFN--PTRLT--------------------------YNALIQGL 272
            LL+ M  +GI P+ I ++   + L+                          YNA+I  L
Sbjct: 514 ELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSL 573

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           CK  E D A +    MVS G  P+++TY  LI G+AS
Sbjct: 574 CKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLAS 610



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 163/344 (47%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + ++G   DS      VS +C++G ++E   +L ++   G  P  V+YN ++ G C    
Sbjct: 169 LHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKR 228

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       EMV+ G  P  +T+N LI  L       +  + L +M E G  PD   Y  
Sbjct: 229 WDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYAT 288

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G+ + A  +   M   G++P ++ Y +++  L    R  EA+ L      + 
Sbjct: 289 IIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQED 348

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D V FN L+D  C NG ++R   LL++M      PD +TY T+++G C++G V+EA 
Sbjct: 349 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAV 408

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL  M   G KP+ IS+                             P  +T+N LI  +
Sbjct: 409 MLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFM 468

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK    + A ELL++M+  G +PD  +Y ++I+G+    K  E+
Sbjct: 469 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEA 512



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 132/253 (52%), Gaps = 1/253 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY + ++G CKEG ++EA  +L+ M   G  P  ++Y  ++ G C    
Sbjct: 379 MLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAER 438

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M++QG +P   T+N LI+ +  +  + +A ++LK+M   G  PD I+Y+ 
Sbjct: 439 WVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYST 498

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L + MI+KGI P  + Y+S+   LS++ R  +  Q+F++     
Sbjct: 499 VIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDAT 558

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D  ++NA+I   C     +RA      M      P+E TY  L+ G   +G V EA+
Sbjct: 559 VRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQ 618

Query: 241 RLLDQM-KRRGIK 252
            LL ++  RR ++
Sbjct: 619 DLLSELCSRRAVR 631



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 140/283 (49%), Gaps = 7/283 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D  T+   V   C+ G ++    +LEQM E+G +P  +TY T+I+G+C +G ++ A    
Sbjct: 352 DDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLL 411

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M   G  P   +Y +++  L    + V+A +++  M ++G +P+ +T+N LIN  C+ 
Sbjct: 412 KNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKK 471

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  ++A  L  +M+  G  P +++Y+++I  L K  +  EA +L    + KG+ P+ +++
Sbjct: 472 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIY 531

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           +++       G  ++   +   +    V  D   YN ++   C++ + + A      M  
Sbjct: 532 SSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 591

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
            G  P+         TY  LI+GL        A++LL E+ S+
Sbjct: 592 NGCMPNES-------TYTILIRGLASEGLVREAQDLLSELCSR 627



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 142/311 (45%), Gaps = 10/311 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++YTY   V  +C  G + +A  +L++M   G   T    + +++  C  G    A 
Sbjct: 104 VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAV 163

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                +  +G    +   NL++  +  +  + E  ++L+++   G  PD ++YN ++ G 
Sbjct: 164 RALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGL 223

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C          L  EM+  G  P + T+ +LI  L +     +  +        G  PD+
Sbjct: 224 CMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDL 283

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            M+  +IDG C +G+ E A  +L  M    + P+ V YNT++ G C   + EEA  LL +
Sbjct: 284 RMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAE 343

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M +     D ++F       N L+   C+N   D   ELL +M+  G  PD  TY ++I 
Sbjct: 344 MFQEDCPLDDVTF-------NILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVIN 396

Query: 306 GIAS---VDKA 313
           G      VD+A
Sbjct: 397 GFCKEGLVDEA 407



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 138/304 (45%), Gaps = 13/304 (4%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + +  +C  GR  +A+R L+   +   V   V YN +I GYC  G +  A      +   
Sbjct: 49  ALIRSLCAAGRTADAARALDTAGDAAGV---VAYNAMIAGYCRAGQVAAARRLAAAV--- 102

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
            + P A TY  ++  L     + +A  +L EM  +G        ++++   CR G  + A
Sbjct: 103 PVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSA 162

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
                 +  KG          ++  + +Q  + E  +L     + G  PDIV +NA++ G
Sbjct: 163 VRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKG 222

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
            C     +    L+ EM R+   P+  T+NTL+   CR G  E+    L QM   G  PD
Sbjct: 223 LCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPD 282

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
                  R+ Y  +I G+CK+   ++A ++L  M S G+ P+   Y ++++G+ S ++  
Sbjct: 283 ------LRM-YATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWE 335

Query: 315 ESSN 318
           E+ +
Sbjct: 336 EAED 339


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 9/300 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P++YT    +SG C+ G+L++   +L+ M+  G   T V+YNTLI G+C KG 
Sbjct: 229 MRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGL 288

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A   ++ M K G+ P   T+N LIH      K+ EA  +  EM    + P+++TYN 
Sbjct: 289 LSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNT 348

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY + G+ + AF  +++M+  GIQ  +LTY +LI  L KQ +  +A Q  +    + 
Sbjct: 349 LINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKEN 408

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   F+ALI G C   N +R F L K M R   HP+E T+N L+   C+    + A 
Sbjct: 409 LVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNILISAFCKNEDFDGAA 468

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI--TPDDN 298
           ++L +M RR I  D         T + +  GL    +  L +ELL+EM  K     P DN
Sbjct: 469 QVLREMVRRSIPLD-------SRTVHQVCNGLNHQGKDQLVKELLQEMEGKKFLQEPLDN 521



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 148/311 (47%), Gaps = 28/311 (9%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +   A+    QMK+ G +PT  + N  +     +G +++A  F  EM +  I P   T N
Sbjct: 183 KFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNTYTLN 242

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +++       K+ +  ++L++M   G     ++YN LI G+C  G    A  L + M   
Sbjct: 243 MVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKLKNMMGKN 302

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+QP ++T+ +LI    +  ++ EA ++F    A  + P+ V +N LI+G+   G+ E A
Sbjct: 303 GLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMA 362

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
           F   ++M    +  D +TYNTL+ G C+Q K  +A + + ++ +  + P+  +F      
Sbjct: 363 FRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMG 422

Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                 +P   T+N LI   CKN++ D A ++LREMV + I  D
Sbjct: 423 QCVRRNADRGFELYKSMIRSGCHPNEQTFNILISAFCKNEDFDGAAQVLREMVRRSIPLD 482

Query: 297 DNTYFSLIEGI 307
             T   +  G+
Sbjct: 483 SRTVHQVCNGL 493



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 112/249 (44%), Gaps = 45/249 (18%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           +M   G +PT  + N  +  LL + ++  A    +EM    I P++ T N++++GYCR G
Sbjct: 193 QMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSG 252

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
              K   L  +M   G + T ++Y                                   N
Sbjct: 253 KLDKGIELLQDMERLGFRATHVSY-----------------------------------N 277

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI GHC  G +  A  L   M +  + P+ VT+NTL+HG CR  K++EA ++  +MK  
Sbjct: 278 TLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKAL 337

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI-- 307
            + P+ +       TYN LI G  +  + ++A     +MV  GI  D  TY +LI G+  
Sbjct: 338 NLPPNTV-------TYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCK 390

Query: 308 -ASVDKAAE 315
            A   KAA+
Sbjct: 391 QAKTRKAAQ 399



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 32/240 (13%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNILINGYCRCGNAKKAFSLHD 139
           T+ +++H L   RK   A+ +L+++   G V  P  + ++ L+  Y  C +  + F    
Sbjct: 117 THAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKV-FDALLYSYRECDSTPRVFD--- 172

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
                          SL    +   +   A   F      G LP +   NA +      G
Sbjct: 173 ---------------SLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQG 217

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A    +EM R K+ P+  T N +M G CR GK+++   LL  M+R G +  H+S  
Sbjct: 218 RVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVS-- 275

Query: 260 PTRLTYNALIQGLCKNQEGDLAEEL-LREMVSK-GITPDDNTYFSLIEGIASVDKAAESS 317
                YN LI G C  ++G L+  L L+ M+ K G+ P+  T+ +LI G     K  E+S
Sbjct: 276 -----YNTLIAGHC--EKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEAS 328


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 165/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  + YT+   ++G+ K+G  ++   + E+MK NGL P   TYN L++ YC +G 
Sbjct: 223 MGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGK 282

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   DEM ++G+     TYN LI  +  E ++ EA+ ++ +M +  + P+ ITYN 
Sbjct: 283 ICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNT 342

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  GN  KA SL D++   G+ P+++TY  LI   SK         L      +G
Sbjct: 343 LIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRG 402

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V    LID +     +E+AF +   M++  + PD   Y  L+HG C +G ++E+ 
Sbjct: 403 ISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESS 462

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   M    ++P  +        YN +I G CK      A  LLREM +KG+ P+  +Y
Sbjct: 463 KLFRSMGEMHVEPSDV-------IYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASY 515

Query: 301 FSLIEGIASVDKAAESS 317
            S+I G+   D   E +
Sbjct: 516 SSII-GVLCKDGKWEEA 531



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 160/295 (54%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+ P+ YTY   ++  C EG++  A  + ++M+E G+    VTYNTLI G C +  
Sbjct: 258 MKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREER 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M K  + P   TYN LI        + +A  +L ++   G+ P  +TYNI
Sbjct: 318 VWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNI 377

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY + GN K    L  EM  +GI P+ +T T LI    +   M +A Q++ +    G
Sbjct: 378 LIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFG 437

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+ ++  LI G C  GN++ +  L + M  M V P +V YNT++HG C++     A 
Sbjct: 438 LVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRAL 497

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           RLL +M+ +G+ P+  S       Y+++I  LCK+ + + AE LL +M+   + P
Sbjct: 498 RLLREMEAKGLVPNVAS-------YSSIIGVLCKDGKWEEAEVLLDKMIELQLKP 545



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 171/312 (54%), Gaps = 7/312 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+ D Y++G  + G C+ G L+++ ++L  +++ GL P  V Y TLIDG C  G++E A 
Sbjct: 158 VKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERAR 217

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F D+M + G++    T+ +LI+ L  +    +  D+ ++M   G+ P+  TYN L+N Y
Sbjct: 218 LFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEY 277

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   +AF L DEM  +G++  ++TY +LI  + ++ R+ EA++L +      + P++
Sbjct: 278 CGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNL 337

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N LI G C  GN+++A SLL ++    + P  VTYN L+ G  + G  +    L  +
Sbjct: 338 ITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLARE 397

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M+ RGI       +P+++T   LI    + QE + A ++   M   G+ PD   Y  LI 
Sbjct: 398 MEGRGI-------SPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIH 450

Query: 306 GIASVDKAAESS 317
           G+       ESS
Sbjct: 451 GLCMKGNMKESS 462



 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 149/294 (50%), Gaps = 8/294 (2%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y S ++   K   L++A     +M + GLV     +N+L+         E A+ F +E+ 
Sbjct: 96  YESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNEL- 154

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           K+ +     ++ ++I        + ++  +L  + + G+ P+ + Y  LI+G C+ G+ +
Sbjct: 155 KERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIE 214

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A    D+M   G+     T+T LI  L K+    +   LFE     G+ P++  +N L+
Sbjct: 215 RARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLM 274

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           + +C  G I RAF L  EM    V  + VTYNTL+ G CR+ +V EA +L+DQMK+  + 
Sbjct: 275 NEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVS 334

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           P+ I       TYN LI G C     D A  LL ++ S G++P   TY  LIEG
Sbjct: 335 PNLI-------TYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEG 381



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 122/226 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V P+  TY + + G C  G L++AS +L+Q+K NGL P+ VTYN LI+GY   GN
Sbjct: 328 MKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGN 387

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       EM  +GI P+  T  +LI   +  ++M +A  +   M + G+VPD   Y +
Sbjct: 388 WKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGV 447

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  GN K++  L   M    ++P+ + Y ++I    K++    A +L     AKG
Sbjct: 448 LIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKG 507

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
           ++P++  ++++I   C +G  E A  LL +M  +++ P     N +
Sbjct: 508 LVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMI 553



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 144/280 (51%), Gaps = 11/280 (3%)

Query: 38  ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
           +N  + TA+ Y ++I+ +     L+ A  F +EMV +G++   + +N L+  L+      
Sbjct: 86  QNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFE 145

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           +A     E+ E+ +  D  ++ I+I G C  GN  K+F L   +   G+ P ++ YT+LI
Sbjct: 146 KAWLFFNELKER-VKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLI 204

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
               K   +  A   F+     G++ +   F  LI+G    G  +  F L ++M    + 
Sbjct: 205 DGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLF 264

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P+  TYN LM+  C +GK+  A  L D+M+ RG++ + +       TYN LI G+C+ + 
Sbjct: 265 PNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVV-------TYNTLIGGMCREER 317

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAA 314
              AE+L+ +M    ++P+  TY +LI G   + ++DKA+
Sbjct: 318 VWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKAS 357


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 161/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P   +Y S + G C++G L+ A+ +   M + GL P  +TY+ L+DGY   G+
Sbjct: 479 MLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGD 538

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E AF   D MV + I+P+  TYN+ I+ L    +  EA DMLK+  EKG VP  +TYN 
Sbjct: 539 TEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNS 598

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+ + G+   A + + EM   G+ P ++TYT+LI    K N    A ++      KG
Sbjct: 599 IMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKG 658

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI  + ALIDG C   +IE A  L  E+    + P+ V YN+L+ G      +E A 
Sbjct: 659 LELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAAL 718

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   GI  D         TY  LI GL K     LA +L  EM +KGI PD   Y
Sbjct: 719 NLQKRMLGEGISCD-------LQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIY 771

Query: 301 FSLIEGI 307
             LI G+
Sbjct: 772 TVLINGL 778



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 156/297 (52%), Gaps = 7/297 (2%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           +TY S +S +CKEG++ EA+ + ++M + GL PT V+YN++I G+C +GNL+MA S   +
Sbjct: 454 FTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSD 513

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M+  G+ P   TY++L+           A  +   M ++ IVP   TYNI ING C+ G 
Sbjct: 514 MLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGR 573

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             +A  +  + + KG  P  LTY S++    K+  +  A   +      G+ P+++ +  
Sbjct: 574 TSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTT 633

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LI+G C N N + A  +  EM    +  D   Y  L+ G C++  +E A  L  ++   G
Sbjct: 634 LINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGG 693

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + P+ +        YN+LI G       + A  L + M+ +GI+ D  TY +LI+G+
Sbjct: 694 LSPNSV-------IYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGL 743



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 164/340 (48%), Gaps = 41/340 (12%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           KSRGV+ D+  Y   +   CK   +E A  +L+ M++ G VP+  T+ ++I     +GN+
Sbjct: 271 KSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNM 330

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A   +DEMV  G+         L+     + K+V A +   +M E G  P+ +TY +L
Sbjct: 331 VEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVL 390

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPT-------------------------------- 149
           I   C+ GN  KA+ L+ +M +K I PT                                
Sbjct: 391 IEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDI 450

Query: 150 --MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
             + TY SL+  L K+ +M EA  L++  L KG+ P  V +N++I GHC  GN++ A S+
Sbjct: 451 ANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASV 510

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
             +M    + P+ +TY+ LM G  + G  E A  + D+M    I        P+  TYN 
Sbjct: 511 FSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIV-------PSDFTYNI 563

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            I GLCK      A+++L++ V KG  P   TY S+++G 
Sbjct: 564 KINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGF 603



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 156/306 (50%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    + P  +TY   ++G+CK GR  EA  ML++  E G VP  +TYN+++DG+  +G+
Sbjct: 549 MVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGS 608

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   EM + G+ P   TY  LI+          A  M  EM  KG+  D   Y  
Sbjct: 609 VSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGA 668

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+  + + A  L  E++  G+ P  + Y SLI      N M  A  L +  L +G
Sbjct: 669 LIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEG 728

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+  +  LIDG    G +  A  L  EM    + PD + Y  L++G C +G++E A+
Sbjct: 729 ISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQ 788

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++L +M+R  I P+     P    YNALI G  K      A  L  EM+ KG+TP+D TY
Sbjct: 789 KILAEMERDSITPNV----P---IYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTY 841

Query: 301 FSLIEG 306
             LI G
Sbjct: 842 DILING 847



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 149/271 (54%), Gaps = 7/271 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  P   TY S + G  KEG +  A     +M E+G+ P  +TY TLI+G+C   N ++
Sbjct: 587 KGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDL 646

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A   R+EM  +G+    + Y  LI     ++ +  A  +  E+ + G+ P+S+ YN LI+
Sbjct: 647 ALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLIS 706

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY    N + A +L   M+ +GI   + TYT+LI  L K+ R++ A  L+    AKG++P
Sbjct: 707 GYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIP 766

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI+++  LI+G C  G +E A  +L EM+R  + P+   YN L+ G  + G ++EA RL 
Sbjct: 767 DIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLH 826

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           ++M  +G+ P+         TY+ LI G  K
Sbjct: 827 NEMLDKGLTPNDT-------TYDILINGKIK 850



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 160/335 (47%), Gaps = 29/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GVQ +     + V G CK+ +L  A    ++M ENG  P  VTY  LI+  C  GN
Sbjct: 340 MVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGN 399

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+    +M  + I PT    N LI   L      EA  +  E     I  +  TYN 
Sbjct: 400 MAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIA-NIFTYNS 458

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+ G   +A +L  +M+ KG+ PT ++Y S+I    +Q  +  A  +F + L  G
Sbjct: 459 LLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCG 518

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ ++ L+DG+  NG+ E AF +   M    + P + TYN  ++G C+ G+  EA+
Sbjct: 519 LKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQ 578

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +L +   +G  P  +++N                            P  +TY  LI G 
Sbjct: 579 DMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGF 638

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CKN   DLA ++  EM +KG+  D   Y +LI+G 
Sbjct: 639 CKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGF 673



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 164/306 (53%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++ + P  +   S + G  K    EEAS++ ++      +    TYN+L+   C +G 
Sbjct: 410 MKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACD-IANIFTYNSLLSWLCKEGK 468

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M+ +G+ PT  +YN +I     +  +  A  +  +M + G+ P+ ITY+I
Sbjct: 469 MSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSI 528

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY + G+ + AF + D M+ + I P+  TY   I  L K  R  EA  + + F+ KG
Sbjct: 529 LMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKG 588

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N+++DG    G++  A +  +EM    V P+ +TY TL++G C+    + A 
Sbjct: 589 FVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLAL 648

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ ++M+ +G++ D  +       Y ALI G CK Q+ + A  L  E++  G++P+   Y
Sbjct: 649 KMRNEMRNKGLELDIAA-------YGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIY 701

Query: 301 FSLIEG 306
            SLI G
Sbjct: 702 NSLISG 707



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 110/200 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++ D   YG+ + G CK+  +E AS +  ++ + GL P +V YN+LI GY N  N
Sbjct: 654 MRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNN 713

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A + +  M+ +GI     TY  LI  LL E ++V A D+  EM  KGI+PD I Y +
Sbjct: 714 MEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTV 773

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C  G  + A  +  EM    I P +  Y +LI    K   + EA +L    L KG
Sbjct: 774 LINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKG 833

Query: 181 MLPDIVMFNALIDGHCTNGN 200
           + P+   ++ LI+G    GN
Sbjct: 834 LTPNDTTYDILINGKIKGGN 853



 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 120/234 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+  TY + ++G CK    + A +M  +M+  GL      Y  LIDG+C K +
Sbjct: 619 MCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQD 678

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     E++  G+ P +  YN LI        M  A ++ K M  +GI  D  TY  
Sbjct: 679 IETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTT 738

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G    A  L+ EM  KGI P ++ YT LI  L  + ++  A ++        
Sbjct: 739 LIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDS 798

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           + P++ ++NALI GH   GN++ AF L  EM    + P++ TY+ L++G+ + G
Sbjct: 799 ITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGG 852



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 157/342 (45%), Gaps = 45/342 (13%)

Query: 3   SRGVQPDSYTYGSFV----SGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           +R V+ D   +  F+    + + K   + EA  + E+M   G+     T + ++      
Sbjct: 198 NRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKD 257

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
            N E A  F  E   +G+   A+ Y+++I        +  A  +LK+M +KG VP   T+
Sbjct: 258 NNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTF 317

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             +I    + GN  +A  L DEM+  G+Q  ++  T+L+    KQ++++ A + F+    
Sbjct: 318 TSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNE 377

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP-------------------- 218
            G  P+ V +  LI+  C NGN+ +A+ L  +M    + P                    
Sbjct: 378 NGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREE 437

Query: 219 -----DEV---------TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
                DE          TYN+L+   C++GK+ EA  L  +M  +G+        PT+++
Sbjct: 438 ASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLA-------PTKVS 490

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           YN++I G C+    D+A  +  +M+  G+ P+  TY  L++G
Sbjct: 491 YNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDG 532



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 27/325 (8%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D   Y   ++   K  +L +A     ++ E+ +VP     N L+        +  A    
Sbjct: 173 DIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVY 232

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           ++MV +G+     T ++++   L +    EA     E   +G+  D+  Y+I+I  +C+ 
Sbjct: 233 EKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKN 292

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            + + A  L  +M  KG  P+  T+TS+I    KQ  M+EA +L +  ++ G+  ++V+ 
Sbjct: 293 LDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVA 352

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             L+ G+C    +  A     +M+     P+ VTY  L+   C+ G + +A  L  QMK 
Sbjct: 353 TTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKN 412

Query: 249 RGIKPDHISFN---------------------------PTRLTYNALIQGLCKNQEGDLA 281
           + I P     N                               TYN+L+  LCK  +   A
Sbjct: 413 KNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEA 472

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
             L ++M+ KG+ P   +Y S+I G
Sbjct: 473 TTLWQKMLDKGLAPTKVSYNSMILG 497


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 169/307 (55%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           ++ +G+ P+  TY   V G CK+GR+EEA R++++MKE G +V   V Y  +I+GYC +G
Sbjct: 279 LQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRG 338

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A   R+EM   GI      YN +I+ L    +M E   +L+EM + G+ PD  +YN
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYN 398

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYCR G+ +KAF +   M+  G+  T LTY +L+      + + +A +L+   L +
Sbjct: 399 TLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR 458

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P+ +  + L+DG    G  E+A +L KE     +  + +T+NT+++G C+ G++ EA
Sbjct: 459 GVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEA 518

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LLD+MK     PD        LTY  L  G CK  +   A  L+ +M   G  P    
Sbjct: 519 EELLDRMKELRCPPD-------SLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEM 571

Query: 300 YFSLIEG 306
           + S I G
Sbjct: 572 FNSFITG 578



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 176/340 (51%), Gaps = 33/340 (9%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG+  +  T+ + ++G+CK GR+ EA  +L++MKE    P ++TY TL DGYC  G L 
Sbjct: 492 ARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLG 551

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++M   G  P+   +N  I    + ++  + +D+  EM  +G+ P+ +TY  LI
Sbjct: 552 TATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALI 611

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+C+ GN  +A +L+ EM++ G+ P +   ++L+    K+ ++ EA+ + +  +   M+
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671

Query: 183 PDI--------------------------VMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           P                            VM+N +I G C +G I  A SL + +   + 
Sbjct: 672 PGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRF 731

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD  TY++L+HG    G ++EA  L D M   G+ P+ I       TYN+LI GLCK+ 
Sbjct: 732 LPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNII-------TYNSLIYGLCKSG 784

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +   A  L  ++ SKGI+P+  TY +LI+      K  E+
Sbjct: 785 KLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEA 824



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 170/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV PD +T        C++GR+ +A   +E+M+  GL    V Y+ ++D YC  G 
Sbjct: 209 MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGW 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYN 119
            E A    + + ++G+ P   TY LL+     + +M EA+ ++KEM E G IV D + Y 
Sbjct: 269 TEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYG 328

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ++INGYC+ G    A  + +EM   GI   +  Y ++I  L K  RM E  ++ +     
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDV 388

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           GM PD   +N LIDG+C  G++ +AF + + M R  +    +TYNTL+ G C    +++A
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL   M +RG+ P+ IS        + L+ GL K  + + A  L +E +++G+  +  T
Sbjct: 449 LRLWFLMLKRGVAPNEISC-------STLLDGLFKAGKTEQALNLWKETLARGLAKNVIT 501

Query: 300 YFSLIEGIASVDKAAES 316
           + ++I G+  + + AE+
Sbjct: 502 FNTVINGLCKIGRMAEA 518



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 33/323 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P+  TYG+ ++G CKEG L EA  +  +M  NG+ P     + L+  +  +G 
Sbjct: 595 MSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGK 654

Query: 61  LEMAFSFRDEMVKQGIMPTAST--------------------------YNLLIHELLMER 94
           ++ A     ++V   ++P  S                           +N++I  L    
Sbjct: 655 VDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSG 714

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           ++ +A  + + +  K  +PD+ TY+ LI+G    G+  +AFSL D M+  G+ P ++TY 
Sbjct: 715 RIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYN 774

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           SLI+ L K  ++  A  LF    +KG+ P+ + +N LID +C  G    AF L ++M   
Sbjct: 775 SLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE 834

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + P  +TY+ L++G C QG +EEA +LLDQM    + P++I       TY  LI G  K
Sbjct: 835 GIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYI-------TYCTLIHGYIK 887

Query: 275 NQEGDLAEELLREMVSKGITPDD 297
           +   +   +L  EM  +G+ P +
Sbjct: 888 SGNMEEISKLYDEMHIRGLLPTN 910



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 176/373 (47%), Gaps = 63/373 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN--- 57
           M+  G++PD Y+Y + + G C+EG + +A  M   M  NGL  T +TYNTL+ G+C+   
Sbjct: 385 MEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHA 444

Query: 58  --------------------------------KGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                            G  E A +   E + +G+     T+N 
Sbjct: 445 IDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNT 504

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I+ L    +M EA+++L  M E    PDS+TY  L +GYC+ G    A  L ++M H G
Sbjct: 505 VINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLG 564

Query: 146 IQPTMLTYTSLI---FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             P++  + S I   F+  + +++   + +     A+G+ P++V + ALI G C  GN+ 
Sbjct: 565 FAPSVEMFNSFITGHFIAKQWHKV---NDIHSEMSARGLSPNLVTYGALIAGWCKEGNLH 621

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP--------- 253
            A +L  EM    ++P+    + LM    ++GKV+EA  +L ++    + P         
Sbjct: 622 EACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEI 681

Query: 254 DHISF--------NP--TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D IS         NP    + +N +I GLCK+     A+ L   + +K   PD+ TY SL
Sbjct: 682 DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSL 741

Query: 304 IEGIA---SVDKA 313
           I G A   S+D+A
Sbjct: 742 IHGCAASGSIDEA 754



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 164/332 (49%), Gaps = 33/332 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P    + SF++G     +  + + +  +M   GL P  VTY  LI G+C +GN
Sbjct: 560 MEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP------- 113
           L  A +   EMV  G+ P     + L+     E K+ EA+ +L+++    ++P       
Sbjct: 620 LHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTI 679

Query: 114 ---------DSIT----------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
                    D+I           +N++I G C+ G    A SL + + +K   P   TY+
Sbjct: 680 EIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYS 739

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           SLI   +    + EA  L +  L+ G+ P+I+ +N+LI G C +G + RA +L  ++   
Sbjct: 740 SLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 799

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + P+ +TYNTL+   C++GK  EA +L  +M   GI+P       T +TY+ LI GLC 
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQP-------TVITYSILIYGLCT 852

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               + A +LL +M+   + P+  TY +LI G
Sbjct: 853 QGYMEEAIKLLDQMIENNVDPNYITYCTLIHG 884



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 159/314 (50%), Gaps = 21/314 (6%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVP-----------TAVTYNTLID 53
           +P   ++   +  + +  R  +A  +L  +  +   L P           +AV+++ L+ 
Sbjct: 97  RPSLVSHAQLLHILARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLR 156

Query: 54  GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
            + + G L  A +  D M K G  P+  + N L+++L+       A  +  +M   G++P
Sbjct: 157 AHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLP 216

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  T  I+   YCR G   +A    +EM   G++  ++ Y +++          +A ++ 
Sbjct: 217 DEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRIL 276

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCR 232
           E+   KG+ P++V +  L+ G+C +G +E A  ++KEM     +  DEV Y  +++G C+
Sbjct: 277 ESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQ 336

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +G++++A R+ ++M+  GI   H++       YN +I GLCK    +  +++L+EM   G
Sbjct: 337 RGRMDDATRVRNEMRDAGI---HVNL----FVYNTMINGLCKLGRMEEVQKVLQEMEDVG 389

Query: 293 ITPDDNTYFSLIEG 306
           + PD  +Y +LI+G
Sbjct: 390 MRPDKYSYNTLIDG 403



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 150/288 (52%), Gaps = 8/288 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G+L  A  + + M + G  P+  + N L++     G+  MA     +M   G++P   T 
Sbjct: 162 GQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTV 221

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            ++      + ++ +A + ++EM   G+  + + Y+ +++ YC  G  + A  + + +  
Sbjct: 222 AIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQR 281

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-MLPDIVMFNALIDGHCTNGNIE 202
           KG+ P ++TYT L+    K  RM EA+++ +     G ++ D V +  +I+G+C  G ++
Sbjct: 282 KGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMD 341

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A  +  EM    +H +   YNT+++G C+ G++EE +++L +M+  G++PD       +
Sbjct: 342 DATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPD-------K 394

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            +YN LI G C+      A E+ R MV  G+     TY +L++G  S+
Sbjct: 395 YSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSL 442


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 171/344 (49%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD   Y + + G+CKEG LE A+ +L +M   GL P  V YNT++ G C+   
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM ++       T+N+L+        +    ++L++M   G +PD ITY  
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G   +A  L   M   G +P  ++YT ++  L    R ++A++L    + +G
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V FN LI+  C  G +E+A  LLK+M      PD ++Y+T++ G  + GK EEA 
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
            LL+ M  +GI P+ I ++                               + YNA+I  L
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK  E D A +    MVS G  P+++TY  LI+G+AS   A E+
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 137/256 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  TY + ++G CKEG ++EA  +L+ M   G  P  V+Y  ++ G C+ G 
Sbjct: 382 MLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M++QG  P   T+N LI+ L  +  + +A ++LK+M   G  PD I+Y+ 
Sbjct: 442 WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 501

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L + M++KGI P  + Y+S+   LS++ R+ +  Q+F+N     
Sbjct: 502 VIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT 561

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V++NA+I   C     +RA      M      P+E TY  L+ G   +G  +EA+
Sbjct: 562 IRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQ 621

Query: 241 RLLDQMKRRGIKPDHI 256
            LL ++  RG    H+
Sbjct: 622 ELLSELCSRGALRKHL 637



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++YT+   V G+C  GR+ +A  +L++M   G  P    Y+ +++  C  G    + 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              + M  +G        NL+++ +  +  + EA  +L+++   G   D ++YN ++ G 
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C          L DEM+     P ++T+ +LI  L +        ++       G  PDI
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            M+  +IDG C  G++E A  +L  M    + P+ V YNT++ G C   + +EA  LL +
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M ++    D +       T+N L+   C+N   D   ELL +M+S G  PD  TY ++I 
Sbjct: 347 MFQKDCPLDDV-------TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 306 GIA 308
           G  
Sbjct: 400 GFC 402



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 142/294 (48%), Gaps = 10/294 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y + V+G C+ G+L  A R+   +    + P A T+  ++ G C +G +  A    DEM
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             +G  P    Y++++           +  +L+ M  KG   D+   N+++N  C  G  
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A  L  ++   G +  +++Y +++  L    R  + ++L +  +     P+IV FN L
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTL 257

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I   C NG  ER   +L +M      PD   Y T++ G C++G +E A  +L++M   G+
Sbjct: 258 IGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           KP+ +        YN +++GLC  +    AEELL EM  K    DD T+  L++
Sbjct: 318 KPNVV-------CYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 45/228 (19%)

Query: 116 ITYNILINGYCRCGNA--------------------------------KKAFSLHDEMIH 143
           + YN ++ GYCR G                                    A  + DEM  
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSF 139

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           KG  P    Y  ++    +      + ++ E   AKG   D    N +++  C  G ++ 
Sbjct: 140 KGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDE 199

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRC---RQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           A  LL+++       D V+YN ++ G C   R G VEE   L+D+M R    P+ +    
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEE---LMDEMVRVDCAPNIV---- 252

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
              T+N LI  LC+N   +   E+L +M   G TPD   Y ++I+GI 
Sbjct: 253 ---TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGIC 297


>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 376

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 164/294 (55%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  + +EMG     P+ ITYN 
Sbjct: 145 LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPNIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++ +A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 153/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M + G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P+  ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P+ +TYNTL++G C+     EA  L+ ++  +G+       NP
Sbjct: 180 FEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 GVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGK 284



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 113/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      P  +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+ +A  +  ++  KG  PD   +N+
Sbjct: 215 FGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNV 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P+  TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMFGEAYN 220


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K    +P+S TY   + G+C+ GRLEEA ++ ++M E G  P+  TY  LI   C+ G  
Sbjct: 191 KEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 250

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A    DEM  +  +P   TY +LI  L  E K+ EA+ + ++M + G+ P  IT+N L
Sbjct: 251 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 310

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           INGYC+ G    AF L   M     +P + TY  L+  L + ++  +A  L    +  G+
Sbjct: 311 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 370

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           LPD V +N L+DG C  G +  AF++   M+   + PD  T+  L+ G C+ G++E+A  
Sbjct: 371 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 430

Query: 242 LLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGLC 273
           +L  M ++GI  D ++F                              T  T+N  +  L 
Sbjct: 431 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 490

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           K+ + + A  +L +M+  G+ P   T+  LIEG     + A S
Sbjct: 491 KDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALS 533



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 175/341 (51%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++   P+ +TY   +  +C+EG++EEA+ +  +M ++GL P  +T+N LI+GYC +G 
Sbjct: 260 MATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGW 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M K    P   TYN L+  L    K  +A  +L+ + + G++PD +TYNI
Sbjct: 320 VVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNI 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G    AF++ + M   G++P   T+T+LI  L K  R+ +A+ +  + + KG
Sbjct: 380 LVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKG 439

Query: 181 MLPDIVMFNALIDGHCTNG-----------------------------------NIERAF 205
           +  D V F ALIDGHC  G                                    +  A 
Sbjct: 440 ISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEAN 499

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           ++L +M +  + P  VT+  L+ G CR G+   + ++L++MK+ G  P+         TY
Sbjct: 500 AMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN-------VYTY 552

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +I GLC N   + AE +L  M S G++P+  TY  L++ 
Sbjct: 553 TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 593



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 161/313 (51%), Gaps = 7/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+    +P+  TY   + G+C+  +  +A  +L ++ +NGL+P  VTYN L+DG+C +G 
Sbjct: 330 MEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQ 389

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L MAF+  + M   G+ P   T+  LI  L    ++ +A+ +L  M +KGI  D +T+  
Sbjct: 390 LNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTA 449

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G AK    L + M+      T  T+   +  L K  ++ EA+ +    +  G
Sbjct: 450 LIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYG 509

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P +V    LI+GHC  G    +  +L+ M +    P+  TY  +++G C  G+VEEA 
Sbjct: 510 LVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAE 569

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  M   G+ P+H        TY  L++   K    D A +++  MV  G  P+ + Y
Sbjct: 570 TILFSMSSFGVSPNH-------FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 622

Query: 301 FSLIEGIASVDKA 313
            +L+ G    + A
Sbjct: 623 SALLSGFVLSNTA 635



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 164/318 (51%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G       Y + V+ +CK G ++ A     ++   G         +L+   C + +
Sbjct: 119 MVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 178

Query: 61  LEMAFSFRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L  AF   ++M K +   P + TY++LIH L    ++ EA  + +EM EKG  P + TY 
Sbjct: 179 LGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 238

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LI   C  G   KA  + DEM  K   P + TYT LI  L ++ ++ EA+ +F   L  
Sbjct: 239 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 298

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P I+ FNALI+G+C  G +  AF LL  M++    P+  TYN LM G CR  K  +A
Sbjct: 299 GLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKA 358

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL ++   G+ PD       R+TYN L+ G CK  + ++A  +   M S G+ PD  T
Sbjct: 359 FLLLRRVVDNGLLPD-------RVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 411

Query: 300 YFSLIEGIASVDKAAESS 317
           + +LI+G+  + +  +++
Sbjct: 412 FTALIDGLCKLGRLEQAN 429



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 156/315 (49%), Gaps = 23/315 (7%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           ++T+  F+  + K+ +L EA+ ML +M + GLVP+ VT+  LI+G+C  G   ++    +
Sbjct: 479 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 538

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
            M + G  P   TY ++I+ L    ++ EA+ +L  M   G+ P+  TY +L+  + + G
Sbjct: 539 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 598

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
              +AF +   M+  G QP    Y++L+  FVLS  N  I A  L     + G L    +
Sbjct: 599 RLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLS--NTAIGARALS----STGDLDARSL 652

Query: 188 FNALIDGHCTNGNIER------AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            +   D +C + ++ R      A  +  E+ +  V P E  YN L+ G C++G++ EA +
Sbjct: 653 SSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQ 711

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L   M + G+ PD           +++I+  CK  + D   E ++ ++     P   +Y 
Sbjct: 712 LTQDMVKHGLFPDK--------AISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYC 763

Query: 302 SLIEGIASVDKAAES 316
            +I G+ +  +  E+
Sbjct: 764 WVIHGLRNEGRVQEA 778



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P+ YTY   ++G+C  GR+EEA  +L  M   G+ P   TY  L+  +   G 
Sbjct: 540 MKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGR 599

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM--LKEMGEKGIVPDSITY 118
           L+ AF     MVK G  P +  Y+ L+   ++    + A  +    ++  + +  +    
Sbjct: 600 LDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDN 659

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N L +   R  +   A  + DE+   G+ PT   Y  L+  L K+ R+IEADQL ++ + 
Sbjct: 660 NCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVK 718

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+ PD  + +++I+ +C     +     +K +   K  P   +Y  ++HG   +G+V+E
Sbjct: 719 HGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQE 777

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
           A++L+  + R     + +   P+       I+ L K +E D
Sbjct: 778 AQKLVSDLVRHTGIEEEVEVTPS-------IEFLMKEEEDD 811



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 122/304 (40%), Gaps = 64/304 (21%)

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D M + G   +   Y+ L+  L        A  + + M  +G V   I Y  ++N  C+ 
Sbjct: 82  DGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN 141

Query: 129 G------------------------------NAKK-----AFSLHDEMI-HKGIQPTMLT 152
           G                              N ++     AF + ++M   +  +P  +T
Sbjct: 142 GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVT 201

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y+ LI  L +  R+ EA QL +  + KG  P    +  LI   C  G  ++A  +L EM 
Sbjct: 202 YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMA 261

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------- 259
                P+  TY  L+   CR+GK+EEA  +  +M + G+ P  I+FN             
Sbjct: 262 TKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVV 321

Query: 260 ---------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                          P   TYN L++GLC+  +   A  LLR +V  G+ PD  TY  L+
Sbjct: 322 SAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILV 381

Query: 305 EGIA 308
           +G  
Sbjct: 382 DGFC 385



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           D M   G + +   Y++L+  L+K N    A  ++   + +G +   + +  +++  C N
Sbjct: 82  DGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN 141

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
           G ++ A     ++ R+    D     +L+   CR+  + EA R+ ++M +        S 
Sbjct: 142 GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEE------SC 195

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
            P  +TY+ LI GLC+    + A +L +EMV KG  P   TY  LI+    I   DKA
Sbjct: 196 RPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKA 253


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K    +P+S TY   + G+C+ GRLEEA ++ ++M E G  P+  TY  LI   C+ G  
Sbjct: 257 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 316

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A    DEM  +  +P   TY +LI  L  E K+ EA+ + ++M + G+ P  IT+N L
Sbjct: 317 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 376

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           INGYC+ G    AF L   M     +P + TY  L+  L + ++  +A  L    +  G+
Sbjct: 377 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 436

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           LPD V +N L+DG C  G +  AF++   M+   + PD  T+  L+ G C+ G++E+A  
Sbjct: 437 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 496

Query: 242 LLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGLC 273
           +L  M ++GI  D ++F                              T  T+N  +  L 
Sbjct: 497 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 556

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           K+ + + A  +L +M+  G+ P   T+  LIEG     + A S
Sbjct: 557 KDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALS 599



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 175/341 (51%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++   P+ +TY   +  +C+EG++EEA+ +  +M ++GL P  +T+N LI+GYC +G 
Sbjct: 326 MATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGW 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M K    P   TYN L+  L    K  +A  +L+ + + G++PD +TYNI
Sbjct: 386 VVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNI 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G    AF++ + M   G++P   T+T+LI  L K  R+ +A+ +  + + KG
Sbjct: 446 LVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKG 505

Query: 181 MLPDIVMFNALIDGHCTNG-----------------------------------NIERAF 205
           +  D V F ALIDGHC  G                                    +  A 
Sbjct: 506 ISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEAN 565

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           ++L +M +  + P  VT+  L+ G CR G+   + ++L++MK+ G  P+         TY
Sbjct: 566 AMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN-------VYTY 618

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +I GLC N   + AE +L  M S G++P+  TY  L++ 
Sbjct: 619 TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 659



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 161/313 (51%), Gaps = 7/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+    +P+  TY   + G+C+  +  +A  +L ++ +NGL+P  VTYN L+DG+C +G 
Sbjct: 396 MEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQ 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L MAF+  + M   G+ P   T+  LI  L    ++ +A+ +L  M +KGI  D +T+  
Sbjct: 456 LNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTA 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G AK    L + M+      T  T+   +  L K  ++ EA+ +    +  G
Sbjct: 516 LIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYG 575

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P +V    LI+GHC  G    +  +L+ M +    P+  TY  +++G C  G+VEEA 
Sbjct: 576 LVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAE 635

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  M   G+ P+H        TY  L++   K    D A +++  MV  G  P+ + Y
Sbjct: 636 TILFSMSSFGVSPNH-------FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 688

Query: 301 FSLIEGIASVDKA 313
            +L+ G    + A
Sbjct: 689 SALLSGFVLSNTA 701



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 164/318 (51%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G       Y + V+ +CK G ++ A     ++   G         +L+   C + +
Sbjct: 185 MVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 244

Query: 61  LEMAFSFRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L  AF   ++M K +   P + TY++LIH L    ++ EA  + +EM EKG  P + TY 
Sbjct: 245 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 304

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LI   C  G   KA  + DEM  K   P + TYT LI  L ++ ++ EA+ +F   L  
Sbjct: 305 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 364

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P I+ FNALI+G+C  G +  AF LL  M++    P+  TYN LM G CR  K  +A
Sbjct: 365 GLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKA 424

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL ++   G+ PD       R+TYN L+ G CK  + ++A  +   M S G+ PD  T
Sbjct: 425 FLLLRRVVDNGLLPD-------RVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 477

Query: 300 YFSLIEGIASVDKAAESS 317
           + +LI+G+  + +  +++
Sbjct: 478 FTALIDGLCKLGRLEQAN 495



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 13/309 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PD +T+ + + G+CK GRLE+A+ +L  M + G+    VT+  LIDG+C  G 
Sbjct: 466 MNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK 525

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +      + MV+   + TA T+N  +  L  + K+ EA+ ML +M + G+VP  +T+ I
Sbjct: 526 AKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTI 585

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+CR G    +  + + M   G  P + TYT +I  L    R+ EA+ +  +  + G
Sbjct: 586 LIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFG 645

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   +  L+  H   G ++RAF ++  M +    P+   Y+ L+ G         AR
Sbjct: 646 VSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGAR 705

Query: 241 RL-----LDQMKRRGIKPDHISFN--------PTRLTYNALIQGLCKNQEGDLAEELLRE 287
            L     LD       + D+   +        PT   YN L+ GLCK      A++L ++
Sbjct: 706 ALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQD 765

Query: 288 MVSKGITPD 296
           MV  G+ PD
Sbjct: 766 MVKHGLFPD 774



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 150/309 (48%), Gaps = 27/309 (8%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           ++T+  F+  + K+ +L EA+ ML +M + GLVP+ VT+  LI+G+C  G   ++    +
Sbjct: 545 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 604

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
            M + G  P   TY ++I+ L    ++ EA+ +L  M   G+ P+  TY +L+  + + G
Sbjct: 605 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 664

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
              +AF +   M+  G QP    Y++L+  FVLS  N  I A  L     + G L    +
Sbjct: 665 RLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLS--NTAIGARALS----STGDLDARSL 718

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            +   D +C +  I++              P E  YN L+ G C++G++ EA +L   M 
Sbjct: 719 SSEENDNNCLSNEIKKCGV-----------PTEDLYNFLVVGLCKEGRIIEADQLTQDMV 767

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G+ PD           +++I+  CK  + D   E ++ ++     P   +Y  +I G+
Sbjct: 768 KHGLFPDK--------AISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGL 819

Query: 308 ASVDKAAES 316
            +  +  E+
Sbjct: 820 RNEGRVQEA 828



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 140/300 (46%), Gaps = 30/300 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   T+   + G C+ G    + +MLE+MK+ G  P   TY  +I+G CN G 
Sbjct: 571 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 630

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A +    M   G+ P   TY +L+   +   ++  A  ++  M + G  P+S  Y+ 
Sbjct: 631 VEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSA 690

Query: 121 LINGYCRCGNA--KKAFS-------------------LHDEMIHKGIQPTMLTYTSLIFV 159
           L++G+     A   +A S                   L +E+   G+ PT   Y  L+  
Sbjct: 691 LLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGV-PTEDLYNFLVVG 749

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K+ R+IEADQL ++ +  G+ PD  + +++I+ +C     +     +K +   K  P 
Sbjct: 750 LCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPS 808

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             +Y  ++HG   +G+V+EA++L+  + R     + +   P+       I+ L K +E D
Sbjct: 809 FASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPS-------IEFLMKEEEDD 861



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 122/304 (40%), Gaps = 64/304 (21%)

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D M + G   +   Y+ L+  L        A  + + M  +G V   I Y  ++N  C+ 
Sbjct: 148 DGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN 207

Query: 129 G------------------------------NAKK-----AFSLHDEMI-HKGIQPTMLT 152
           G                              N ++     AF + ++M   +  +P  +T
Sbjct: 208 GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVT 267

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y+ LI  L +  R+ EA QL +  + KG  P    +  LI   C  G  ++A  +L EM 
Sbjct: 268 YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMA 327

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------- 259
                P+  TY  L+   CR+GK+EEA  +  +M + G+ P  I+FN             
Sbjct: 328 TKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVV 387

Query: 260 ---------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                          P   TYN L++GLC+  +   A  LLR +V  G+ PD  TY  L+
Sbjct: 388 SAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILV 447

Query: 305 EGIA 308
           +G  
Sbjct: 448 DGFC 451



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 43/215 (20%)

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           D M   G + +   Y++L+  L+K N    A  ++   + +G +   + +  +++  C N
Sbjct: 148 DGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN 207

Query: 199 GNIE-----------------------------------RAFSLLKEMDRMK-VHPDEVT 222
           G ++                                    AF + ++M + +   P+ VT
Sbjct: 208 GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVT 267

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y+ L+HG C  G++EEA +L  +M  +G +P       TR TY  LI+  C     D A 
Sbjct: 268 YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS------TR-TYTVLIKAKCDIGMTDKAM 320

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           ++L EM +K   P+ +TY  LI+ +    K  E++
Sbjct: 321 KMLDEMATKACVPNVHTYTILIDRLCREGKIEEAN 355


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 171/312 (54%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ + PD  T+ + + G C  G+LEEA  +  +M    + P   T+N L+D  C +GN
Sbjct: 234 MIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGN 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +    M+K+G+MP   TY+ L+    +  ++ +A  +L  + + G  P++ +Y  
Sbjct: 294 LKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCT 353

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     +A SL ++M  KGI P  +TY SLI  L K  R+  A +L +     G
Sbjct: 354 MINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNG 413

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +I  +N LID  C N ++++A +L+K++    + PD  T+N L++G C+ G+++ A+
Sbjct: 414 QPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQ 473

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   +  +G       ++    TYN ++ GLCK    D AE LL +M   GI PD  TY
Sbjct: 474 DVFQDLLSKG-------YSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTY 526

Query: 301 FSLIEGIASVDK 312
            +LI+ +   D+
Sbjct: 527 ETLIQALFHKDE 538



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 156/294 (53%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD YT+   V  +CKEG L+ A  ML  M + G++P  VTY++L+DGYC    
Sbjct: 269 MVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQ 328

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + + + G  P A +Y  +I+     + + EA  +  +M  KGI PD +TYN 
Sbjct: 329 VNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNS 388

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A+ L DEM   G    + TY  LI  L K + + +A  L +    +G
Sbjct: 389 LIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQG 448

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN LI G C  G ++ A  + +++       +  TYN +++G C++G  +EA 
Sbjct: 449 IQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAE 508

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            LL +M   GI PD +       TY  LIQ L    E + AE+LLREM+++ + 
Sbjct: 509 ALLSKMDDNGIIPDAV-------TYETLIQALFHKDENEKAEKLLREMIARDVV 555



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 169/336 (50%), Gaps = 28/336 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ + + G+C  G+++EA    + +   G      +Y TLI+G C  G    A
Sbjct: 133 GYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTA 192

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                ++  + +      YN +I  L   + +++A ++  +M  K I PD +T++ LI G
Sbjct: 193 LQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYG 252

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G  ++AF L  EM+ K I P   T+  L+  L K+  +  A  +    + +G++P+
Sbjct: 253 FCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPN 312

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +++L+DG+C    + +A  +L  + +M   P+  +Y T+++G C+   V+EA  L +
Sbjct: 313 VVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFN 372

Query: 245 QMKRRGIKPDHISFN---------------------------PTRL-TYNALIQGLCKNQ 276
            M+ +GI PD +++N                           P  + TYN LI  LCKN 
Sbjct: 373 DMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNH 432

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             D A  L++++  +GI PD  T+  LI G+  V +
Sbjct: 433 HVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGR 468



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 154/308 (50%), Gaps = 28/308 (9%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A  +  +++ +G+ P   T+N LI+ YC+   +  AFS   +++K G  P   T+N LI 
Sbjct: 87  AISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIK 146

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            L +  K+ EA      +   G   D  +Y  LING C+ G  + A  +  ++  K ++ 
Sbjct: 147 GLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKI 206

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
            ++ Y ++I  L K   +I+A +L+   +AK + PD+V F+ALI G C  G +E AF L 
Sbjct: 207 NVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLF 266

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------- 259
           +EM    ++PD  T+N L+   C++G ++ A+ +L  M + G+ P+ ++++         
Sbjct: 267 REMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLV 326

Query: 260 -------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                              P   +Y  +I G CK +  D A  L  +M  KGI PD  TY
Sbjct: 327 NQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTY 386

Query: 301 FSLIEGIA 308
            SLI+G+ 
Sbjct: 387 NSLIDGLC 394



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 28/186 (15%)

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
           V S  N    A  L       G+ PDI  FN LI+ +C    +  AFS++ ++ +M   P
Sbjct: 77  VKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEP 136

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP----------TR------ 262
           D +T+NTL+ G C  GKV+EA    D +   G   D  S+            TR      
Sbjct: 137 DTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQML 196

Query: 263 ------------LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                       + YN +I  LCK++    A EL  +M++K I+PD  T+ +LI G   V
Sbjct: 197 RKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIV 256

Query: 311 DKAAES 316
            +  E+
Sbjct: 257 GQLEEA 262



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 7/108 (6%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+G   +++TY   V+G+CKEG  +EA  +L +M +NG++P AVTY TLI    +K   E
Sbjct: 481 SKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENE 540

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
            A     EM+ + ++       +++H   +E    EA D  ++ G+KG
Sbjct: 541 KAEKLLREMIARDVVYALEGLEMVLH---LES---EAKDQ-EKFGKKG 581


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + +++ + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++  EM   G+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+   A   + EM+ +G  P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E A    K M +  +  D+V Y  L+ G CR+G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD+        TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPDNG-------TYTMIINEFCKKGDVKTGSKLLKEMQRDGHVP 414



 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 176/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++ +    
Sbjct: 56  LEAKGAQRSDVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E +M  A  +  E+ + G+ P  +++N
Sbjct: 116 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+++M +A++LF   +  
Sbjct: 176 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC  G+I+ A    KEM R    PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
           + L+D+M  +G+KPD I++                            RL    Y ALI G
Sbjct: 296 QDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+  +   AE++LREM+S G+ PD+ TY  +I
Sbjct: 356 LCREGQSVDAEKMLREMLSVGLKPDNGTYTMII 388



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 132/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++ +A+ +  +M  NGLVP  VT+ TLIDG+C  G+
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGS 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     EM++QG  P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 IDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A      MI + I+   + YT+LI  L ++ + ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C  G+++    LLKEM R    P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 133/262 (50%), Gaps = 11/262 (4%)

Query: 47  TYNTLIDGYCNKGNLEMAF-SFRDEMVKQGIMPTASTYNLLIHELLMER-KMVEADDMLK 104
            ++ LI  Y   G L  A   FR     +  +P  +   +L H + ++  K+V      K
Sbjct: 68  VFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWG--FYK 125

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           E+ E G       +NIL++ +C+ G  + A S+ DE+   G++P+++++ +L+    +  
Sbjct: 126 EILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLG 185

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            + E  +L     A G+ PD+  ++ LI+G C    +  A  L  EM    + P+ VT+ 
Sbjct: 186 DLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFT 245

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           TL+ G C+ G ++ A     +M R+G  PD I       TYN LI GLCK  +   A++L
Sbjct: 246 TLIDGHCKTGSIDLAMETYKEMLRQGFSPDLI-------TYNTLIYGLCKKGDLKQAQDL 298

Query: 285 LREMVSKGITPDDNTYFSLIEG 306
           + EM  KG+ PD  TY +LI+G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 7/177 (3%)

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           K  +  + E++  G   ++  +  L+    K+  M  A  +F+     G+ P +V FN L
Sbjct: 118 KLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTL 177

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G+   G+++  F L   M    V PD  TY+ L++G C++ K+ +A  L  +M   G+
Sbjct: 178 MNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGL 237

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            P+ ++F         LI G CK    DLA E  +EM+ +G +PD  TY +LI G+ 
Sbjct: 238 VPNGVTFT-------TLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLC 287


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 169/307 (55%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           ++ +G+ P+  TY   V G CK+GR+EEA R++++MKE G +V   V Y  +I+GYC +G
Sbjct: 279 LQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRG 338

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A   R+EM   GI      YN +I+ L    +M E   +L+EM + G+ PD  +YN
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYN 398

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYCR G+ +KAF +   M+  G+  T LTY +L+      + + +A +L+   L +
Sbjct: 399 TLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKR 458

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P+ +  + L+DG    G  E+A +L KE     +  + +T+NT+++G C+ G++ EA
Sbjct: 459 GVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEA 518

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LLD+MK     PD        LTY  L  G CK  +   A  L+ +M   G  P    
Sbjct: 519 EELLDRMKELRCPPD-------SLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEM 571

Query: 300 YFSLIEG 306
           + S I G
Sbjct: 572 FNSFITG 578



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 176/340 (51%), Gaps = 33/340 (9%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG+  +  T+ + ++G+CK GR+ EA  +L++MKE    P ++TY TL DGYC  G L 
Sbjct: 492 ARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLG 551

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    ++M   G  P+   +N  I    + ++  + +D+  EM  +G+ P+ +TY  LI
Sbjct: 552 TATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALI 611

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+C+ GN  +A +L+ EM++ G+ P +   ++L+    K+ ++ EA+ + +  +   M+
Sbjct: 612 AGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMI 671

Query: 183 PDI--------------------------VMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           P                            VM+N +I G C +G I  A SL + +   + 
Sbjct: 672 PGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRF 731

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD  TY++L+HG    G ++EA  L D M   G+ P+ I       TYN+LI GLCK+ 
Sbjct: 732 LPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNII-------TYNSLIYGLCKSG 784

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +   A  L  ++ SKGI+P+  TY +LI+      K  E+
Sbjct: 785 KLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEA 824



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 170/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV PD +T        C++GR+ +A   +E+M+  GL    V Y+ ++D YC  G 
Sbjct: 209 MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGW 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYN 119
            E A    + + ++G+ P   TY LL+     + +M EA+ ++KEM E G IV D + Y 
Sbjct: 269 TEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYG 328

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ++INGYC+ G    A  + +EM   GI   +  Y ++I  L K  RM E  ++ +     
Sbjct: 329 MMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDV 388

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           GM PD   +N LIDG+C  G++ +AF + + M R  +    +TYNTL+ G C    +++A
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL   M +RG+ P+ IS        + L+ GL K  + + A  L +E +++G+  +  T
Sbjct: 449 LRLWFLMLKRGVAPNEISC-------STLLDGLFKAGKTEQALNLWKETLARGLAKNVIT 501

Query: 300 YFSLIEGIASVDKAAES 316
           + ++I G+  + + AE+
Sbjct: 502 FNTVINGLCKIGRMAEA 518



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 175/372 (47%), Gaps = 61/372 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN--- 57
           M+  G++PD Y+Y + + G C+EG + +A  M   M  NGL  T +TYNTL+ G+C+   
Sbjct: 385 MEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHA 444

Query: 58  --------------------------------KGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                            G  E A +   E + +G+     T+N 
Sbjct: 445 IDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNT 504

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I+ L    +M EA+++L  M E    PDS+TY  L +GYC+ G    A  L ++M H G
Sbjct: 505 VINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLG 564

Query: 146 IQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
             P++  + S I    ++KQ   +  + +     A+G+ P++V + ALI G C  GN+  
Sbjct: 565 FAPSVEMFNSFITGHFIAKQWHKV--NDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHE 622

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP---------D 254
           A +L  EM    ++P+    + LM    ++GKV+EA  +L ++    + P         D
Sbjct: 623 ACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEID 682

Query: 255 HISF--------NP--TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            IS         NP    + +N +I GLCK+     A+ L   + +K   PD+ TY SLI
Sbjct: 683 KISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLI 742

Query: 305 EGIA---SVDKA 313
            G A   S+D+A
Sbjct: 743 HGCAASGSIDEA 754



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 42/304 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P+  TYG+ ++G CKEG L EA  +  +M  NG+ P     + L+  +  +G 
Sbjct: 595 MSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGK 654

Query: 61  LEMAFSFRDEMVKQGIMPTAST--------------------------YNLLIHELLMER 94
           ++ A     ++V   ++P  S                           +N++I  L    
Sbjct: 655 VDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSG 714

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           ++ +A  + + +  K  +PD+ TY+ LI+G    G+  +AFSL D M+  G+ P ++TY 
Sbjct: 715 RIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYN 774

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL------- 207
           SLI+ L K  ++  A  LF    +KG+ P+ + +N LID +C  G    AF L       
Sbjct: 775 SLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE 834

Query: 208 ------LKEMDRM---KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
                 +K +D+M    V P+ +TY TL+HG  + G +EE  +L D+M  RG+ P +   
Sbjct: 835 GYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTNWIG 894

Query: 259 NPTR 262
           N  R
Sbjct: 895 NWKR 898



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 49/339 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P    + SF++G     +  + + +  +M   GL P  VTY  LI G+C +GN
Sbjct: 560 MEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP------- 113
           L  A +   EMV  G+ P     + L+     E K+ EA+ +L+++    ++P       
Sbjct: 620 LHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTI 679

Query: 114 ---------DSIT----------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
                    D+I           +N++I G C+ G    A SL + + +K   P   TY+
Sbjct: 680 EIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYS 739

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           SLI   +    + EA  L +  L+ G+ P+I+ +N+LI G C +G + RA +L  ++   
Sbjct: 740 SLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 799

Query: 215 KVHPDEVTYNTLMHGRCRQGK----------------VEEARRLLDQMKRRGIKPDHISF 258
            + P+ +TYNTL+   C++GK                +EEA +LLDQM    + P++I  
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYI-- 857

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                TY  LI G  K+   +   +L  EM  +G+ P +
Sbjct: 858 -----TYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTN 891



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 159/314 (50%), Gaps = 21/314 (6%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVP-----------TAVTYNTLID 53
           +P   ++   +  + +  R  +A  +L  +  +   L P           +AV+++ L+ 
Sbjct: 97  RPSLVSHAQLLHILARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTFSAVSFDLLLR 156

Query: 54  GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
            + + G L  A +  D M K G  P+  + N L+++L+       A  +  +M   G++P
Sbjct: 157 AHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLP 216

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  T  I+   YCR G   +A    +EM   G++  ++ Y +++          +A ++ 
Sbjct: 217 DEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRIL 276

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCR 232
           E+   KG+ P++V +  L+ G+C +G +E A  ++KEM     +  DEV Y  +++G C+
Sbjct: 277 ESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQ 336

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +G++++A R+ ++M+  GI   H++       YN +I GLCK    +  +++L+EM   G
Sbjct: 337 RGRMDDATRVRNEMRDAGI---HVNL----FVYNTMINGLCKLGRMEEVQKVLQEMEDVG 389

Query: 293 ITPDDNTYFSLIEG 306
           + PD  +Y +LI+G
Sbjct: 390 MRPDKYSYNTLIDG 403



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 150/288 (52%), Gaps = 8/288 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G+L  A  + + M + G  P+  + N L++     G+  MA     +M   G++P   T 
Sbjct: 162 GQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTV 221

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            ++      + ++ +A + ++EM   G+  + + Y+ +++ YC  G  + A  + + +  
Sbjct: 222 AIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQR 281

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-MLPDIVMFNALIDGHCTNGNIE 202
           KG+ P ++TYT L+    K  RM EA+++ +     G ++ D V +  +I+G+C  G ++
Sbjct: 282 KGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMD 341

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A  +  EM    +H +   YNT+++G C+ G++EE +++L +M+  G++PD       +
Sbjct: 342 DATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPD-------K 394

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            +YN LI G C+      A E+ R MV  G+     TY +L++G  S+
Sbjct: 395 YSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSL 442


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 170/312 (54%), Gaps = 11/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P   T+ + ++G+C EGR+ EA+ ++ +M   GL    VTY T+++G C  G+ + A
Sbjct: 216 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 275

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   +M +  I P    Y+ +I  L  +    +A  +  EM EKGI P+  TYN +I+G
Sbjct: 276 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 335

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G    A  L  +MI + I P +LT+ +LI    K+ ++ EA++L +  L + + PD
Sbjct: 336 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 395

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N++I G C +   + A    K M  +   PD VT+NT++   CR  +V+E  +LL 
Sbjct: 396 TVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 451

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++ RRG+       N T  TYN LI G C+    + A++L +EM+S G+ PD  T   L+
Sbjct: 452 EISRRGLVA-----NTT--TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 504

Query: 305 EGIASVDKAAES 316
            G    +K  E+
Sbjct: 505 YGFCENEKLEEA 516



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 165/336 (49%), Gaps = 32/336 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D  TYG+ V+GMCK G  + A  +L +M+E  + P  V Y+ +ID  C  G+
Sbjct: 247 MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGH 306

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+++GI P   TYN +I       +  +A  +L++M E+ I PD +T+N 
Sbjct: 307 HSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 366

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G   +A  L DEM+H+ I P  +TY S+I+   K NR  +A  +F+   +  
Sbjct: 367 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 424

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V FN +ID +C    ++    LL+E+ R  +  +  TYNTL+HG C    +  A+
Sbjct: 425 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 482

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
            L  +M   G+ PD I+ N                               + YN +I G+
Sbjct: 483 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 542

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + D A +L   +   G+ PD  TY  +I G  
Sbjct: 543 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 578



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 176/345 (51%), Gaps = 34/345 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R +  + Y++   +   C   +L  +     ++ + G  P  VT+NTL+ G C +  
Sbjct: 132 MEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDR 191

Query: 61  LEMAF----------SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           +  A           S  D+MV+ G+ P   T+N LI+ L +E +++EA  ++ +M  KG
Sbjct: 192 ISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKG 251

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           +  D +TY  ++NG C+ G+ K A +L  +M    I+P ++ Y+++I  L K     +A 
Sbjct: 252 LHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQ 311

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            LF   L KG+ P++  +N +IDG C+ G    A  LL++M   +++PD +T+N L+   
Sbjct: 312 YLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISAS 371

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFN------------------------PTRLTYN 266
            ++GK+ EA +L D+M  R I PD +++N                        P  +T+N
Sbjct: 372 VKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFN 431

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            +I   C+ +  D   +LLRE+  +G+  +  TY +LI G   VD
Sbjct: 432 TIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVD 476



 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 164/349 (46%), Gaps = 41/349 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++PD   Y + +  +CK+G   +A  +  +M E G+ P   TYN +IDG+C+ G 
Sbjct: 282 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++ I P   T+N LI   + E K+ EA+ +  EM  + I PD++TYN 
Sbjct: 342 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 401

Query: 121 LINGYC---RCGNAKKAFSLHD----------------------------EMIHKGIQPT 149
           +I G+C   R  +AK  F L                              E+  +G+   
Sbjct: 402 MIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVAN 461

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY +LI    + + +  A  LF+  ++ G+ PD +  N L+ G C N  +E A  L +
Sbjct: 462 TTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE 521

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            +   K+  D V YN ++HG C+  KV+EA  L   +   G++PD         TYN +I
Sbjct: 522 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMI 574

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
            G C       A  L  +M   G  PD++TY +LI G      +DK+ E
Sbjct: 575 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 623



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 150/299 (50%), Gaps = 11/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+ + +S   KEG+L EA ++ ++M    + P  VTYN++I G+C    
Sbjct: 352 MIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M      P   T+N +I      +++ E   +L+E+  +G+V ++ TYN 
Sbjct: 412 FDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 467

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C   N   A  L  EMI  G+ P  +T   L++   +  ++ EA +LFE      
Sbjct: 468 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 527

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V +N +I G C    ++ A+ L   +    V PD  TYN ++ G C +  + +A 
Sbjct: 528 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 587

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L  +MK  G +PD+        TYN LI+G  K  E D + EL+ EM S G + D  T
Sbjct: 588 VLFHKMKDNGHEPDNS-------TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 639



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 135/267 (50%), Gaps = 17/267 (6%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +L+ A  F D MV+     TA   N +I   +   +   A  + ++M  + I  +  ++N
Sbjct: 86  SLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFN 145

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR----------MIEA 169
           ILI  +C C     + S   ++   G QP ++T+ +L+  L  ++R          M+E 
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             LF+  +  G+ P ++ FN LI+G C  G +  A +L+ +M    +H D VTY T+++G
Sbjct: 206 GSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 265

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C+ G  + A  LL +M+   IKPD +        Y+A+I  LCK+     A+ L  EM+
Sbjct: 266 MCKMGDTKSALNLLSKMEETHIKPDVV-------IYSAIIDRLCKDGHHSDAQYLFSEML 318

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            KGI P+  TY  +I+G  S  + +++
Sbjct: 319 EKGIAPNVFTYNCMIDGFCSFGRWSDA 345



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 36/235 (15%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD  T+ + +   C+  R++E  ++L ++   GLV    TYNTLI G+C   NL  A  
Sbjct: 424 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 483

Query: 67  FRDEMVKQGIMPTAST-----------------------------------YNLLIHELL 91
              EM+  G+ P   T                                   YN++IH + 
Sbjct: 484 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMC 543

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
              K+ EA D+   +   G+ PD  TYN++I+G+C       A  L  +M   G +P   
Sbjct: 544 KGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNS 603

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           TY +LI    K   + ++ +L     + G   D      + D   T+G ++++FS
Sbjct: 604 TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGRLDKSFS 657



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 3/188 (1%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A    D M+      T +    +I V  + NR   A  L+     + +  +I  FN LI 
Sbjct: 90  AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIK 149

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C    +  + S   ++ ++   PD VT+NTL+HG C + ++ EA  L   M   G   
Sbjct: 150 CFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLF 209

Query: 254 DH---ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           D    I   P  +T+N LI GLC       A  L+ +MV KG+  D  TY +++ G+  +
Sbjct: 210 DQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKM 269

Query: 311 DKAAESSN 318
                + N
Sbjct: 270 GDTKSALN 277



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
            GV+PD  TY   +SG C +  + +A+ +  +MK+NG  P   TYNTLI G    G ++ 
Sbjct: 561 HGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 620

Query: 64  AFSFRDEMVKQGIMPTASTYNLL 86
           +     EM   G    A T  ++
Sbjct: 621 SIELISEMRSNGFSGDAFTIKMV 643



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +PD+ TY + + G  K G ++++  ++ +M+ NG    A T   + D     G 
Sbjct: 593 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGR 651

Query: 61  LEMAFS 66
           L+ +FS
Sbjct: 652 LDKSFS 657


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 164/305 (53%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD +TY   + G+CK GR   A RML++M+E G  P  VTY+TL+  +C  G 
Sbjct: 339 MGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGM 398

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +  D+M+ +G    +  YN +I+ L  + K+ +A  +++EM  +G  PD  TYN 
Sbjct: 399 WDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNT 458

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C     ++A  +   +I +G+    +TY +LI  L +  R  E  +L    L  G
Sbjct: 459 MIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHG 518

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D++ +N LI   C  GN++R+ +LL+EM    + P+  +YN L++  C+ GKV +A 
Sbjct: 519 CQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDAL 578

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G+ PD +       TYN LI GLCK      A  LL ++ ++ + PD  TY
Sbjct: 579 ELSKEMLNQGLTPDIV-------TYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTY 631

Query: 301 FSLIE 305
             LI 
Sbjct: 632 NILIS 636



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 146/258 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G   +S  Y   +  +CK+G+L++A+R++++MK  G  P   TYNT+I   CN   
Sbjct: 409 MLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDL 468

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      ++++G++    TYN LIH LL   +  E   +  EM   G   D I+YN 
Sbjct: 469 MEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNG 528

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ GN  ++ +L +EM+ KGI+P   +Y  LI  L K  ++ +A +L +  L +G
Sbjct: 529 LIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 588

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N LI+G C  G    A +LL+++    VHPD VTYN L+   C+   +++A 
Sbjct: 589 LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAA 648

Query: 241 RLLDQMKRRGIKPDHISF 258
            LLD+    GI P+  ++
Sbjct: 649 MLLDKAISGGIVPNERTW 666



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 162/316 (51%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  P   TYG  + G+C+  + +EA  ML ++ E  +V      NT+I G   +G 
Sbjct: 273 MMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVV----MLNTVIRGCLTEGK 328

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    + M  +G  P   TY++L+H L    +   A  ML EM EKG  P+ +TY+ 
Sbjct: 329 LARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYST 388

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +CR G    A ++ D+M+ KG       Y  +I+ L K  ++ +A +L +   ++G
Sbjct: 389 LLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQG 448

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI  +N +I   C N  +E A  + + +    V  + +TYNTL+H   R G+ +E  
Sbjct: 449 CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGL 508

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL  +M   G + D IS       YN LI+ LCK    D +  LL EMV+KGI P++ +Y
Sbjct: 509 RLASEMLLHGCQLDVIS-------YNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSY 561

Query: 301 FSLIEGIASVDKAAES 316
             LI  +    K  ++
Sbjct: 562 NMLINELCKAGKVRDA 577



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 160/313 (51%), Gaps = 11/313 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P ++T+G     +C+ GR  +A  +L  M  +G VP AV Y T+I     +G +  A 
Sbjct: 173 VPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAA 232

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM+  G     +T+N L+  L    ++ EA  ++  M  +G +P  +TY  L+ G 
Sbjct: 233 MLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGL 292

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR   A +A +    M+ +  +  ++   ++I     + ++  A +L+E   +KG  PD+
Sbjct: 293 CRTRQADEACA----MLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDV 348

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             ++ L+ G C  G    A  +L EM+     P+ VTY+TL+H  CR G  ++AR +LDQ
Sbjct: 349 HTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 408

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G       F+     YN +I  LCK+ + D A  L++EM S+G  PD  TY ++I 
Sbjct: 409 MLAKG-------FSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIY 461

Query: 306 GIASVDKAAESSN 318
            + + D   E+ +
Sbjct: 462 HLCNNDLMEEAEH 474



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 118/233 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+G +PD  TY + +  +C    +EEA  +   + E G+V   +TYNTLI      G 
Sbjct: 444 MKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGR 503

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       EM+  G      +YN LI  L  E  +  +  +L+EM  KGI P++ +YN+
Sbjct: 504 WQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNM 563

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C+ G  + A  L  EM+++G+ P ++TY +LI  L K      A  L E    + 
Sbjct: 564 LINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNEN 623

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           + PDIV +N LI  HC    ++ A  LL +     + P+E T+  ++    RQ
Sbjct: 624 VHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVRQ 676



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 16/252 (6%)

Query: 64  AFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDML--KEMGEKGIVPDSITYNI 120
           A    D+M ++  + P+  +YN+++  L   R    AD +L  + M    + P + T+ +
Sbjct: 125 ALHLLDQMPRRFAVSPSFRSYNVVLSTL--ARADCHADALLLYRRMLRDRVPPTTFTFGV 182

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
                CR G A  A +L   M   G  P  + Y ++I  L  Q  + EA  L +  L  G
Sbjct: 183 AARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMG 242

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+  FN L+ G C  G +  A  L+  M      P  VTY  L+ G CR  + +EA 
Sbjct: 243 CAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEAC 302

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L ++    +           +  N +I+G     +   A EL   M SKG  PD +TY
Sbjct: 303 AMLGRLPEVNV-----------VMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTY 351

Query: 301 FSLIEGIASVDK 312
             L+ G+  + +
Sbjct: 352 SILMHGLCKLGR 363



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G Q D  +Y   +  +CKEG ++ +  +LE+M   G+ P   +YN LI+  C  G 
Sbjct: 514 MLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGK 573

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM+ QG+ P   TYN LI+ L        A ++L+++  + + PD +TYNI
Sbjct: 574 VRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNI 633

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           LI+ +C+      A  L D+ I  GI P   T+  ++    +Q   +E
Sbjct: 634 LISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVRQTVNLE 681


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 170/312 (54%), Gaps = 11/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P   T+ + ++G+C EGR+ EA+ ++ +M   GL    VTY T+++G C  G+ + A
Sbjct: 221 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 280

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   +M +  I P    Y+ +I  L  +    +A  +  EM EKGI P+  TYN +I+G
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G    A  L  +MI + I P +LT+ +LI    K+ ++ EA++L +  L + + PD
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N++I G C +   + A    K M  +   PD VT+NT++   CR  +V+E  +LL 
Sbjct: 401 TVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 456

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++ RRG+       N T  TYN LI G C+    + A++L +EM+S G+ PD  T   L+
Sbjct: 457 EISRRGLVA-----NTT--TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 509

Query: 305 EGIASVDKAAES 316
            G    +K  E+
Sbjct: 510 YGFCENEKLEEA 521



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 165/336 (49%), Gaps = 32/336 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D  TYG+ V+GMCK G  + A  +L +M+E  + P  V Y+ +ID  C  G+
Sbjct: 252 MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGH 311

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+++GI P   TYN +I       +  +A  +L++M E+ I PD +T+N 
Sbjct: 312 HSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 371

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G   +A  L DEM+H+ I P  +TY S+I+   K NR  +A  +F+   +  
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 429

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V FN +ID +C    ++    LL+E+ R  +  +  TYNTL+HG C    +  A+
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
            L  +M   G+ PD I+ N                               + YN +I G+
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 547

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + D A +L   +   G+ PD  TY  +I G  
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 168/331 (50%), Gaps = 44/331 (13%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD  T+ + + G+C E R+ EA  +   M E G +                     A
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE--------------------A 210

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +  D+MV+ G+ P   T+N LI+ L +E +++EA  ++ +M  KG+  D +TY  ++NG
Sbjct: 211 VALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+ K A +L  +M    I+P ++ Y+++I  L K     +A  LF   L KG+ P+
Sbjct: 271 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 330

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +IDG C+ G    A  LL++M   +++PD +T+N L+    ++GK+ EA +L D
Sbjct: 331 VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCD 390

Query: 245 QMKRRGIKPDHISFN------------------------PTRLTYNALIQGLCKNQEGDL 280
           +M  R I PD +++N                        P  +T+N +I   C+ +  D 
Sbjct: 391 EMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDE 450

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVD 311
             +LLRE+  +G+  +  TY +LI G   VD
Sbjct: 451 GMQLLREISRRGLVANTTTYNTLIHGFCEVD 481



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 164/349 (46%), Gaps = 41/349 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++PD   Y + +  +CK+G   +A  +  +M E G+ P   TYN +IDG+C+ G 
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++ I P   T+N LI   + E K+ EA+ +  EM  + I PD++TYN 
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 121 LINGYC---RCGNAKKAFSLHD----------------------------EMIHKGIQPT 149
           +I G+C   R  +AK  F L                              E+  +G+   
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVAN 466

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY +LI    + + +  A  LF+  ++ G+ PD +  N L+ G C N  +E A  L +
Sbjct: 467 TTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE 526

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            +   K+  D V YN ++HG C+  KV+EA  L   +   G++PD         TYN +I
Sbjct: 527 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMI 579

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
            G C       A  L  +M   G  PD++TY +LI G      +DK+ E
Sbjct: 580 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 628



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 150/299 (50%), Gaps = 11/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+ + +S   KEG+L EA ++ ++M    + P  VTYN++I G+C    
Sbjct: 357 MIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 416

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M      P   T+N +I      +++ E   +L+E+  +G+V ++ TYN 
Sbjct: 417 FDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C   N   A  L  EMI  G+ P  +T   L++   +  ++ EA +LFE      
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V +N +I G C    ++ A+ L   +    V PD  TYN ++ G C +  + +A 
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 592

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L  +MK  G +PD+        TYN LI+G  K  E D + EL+ EM S G + D  T
Sbjct: 593 VLFHKMKDNGHEPDNS-------TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 136/272 (50%), Gaps = 22/272 (8%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +L+ A  F D MV+     TA   N +I   +   +   A  + ++M  + I  +  ++N
Sbjct: 86  SLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFN 145

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM------------- 166
           ILI  +C C     + S   ++   G QP ++T+ +L+  L  ++R+             
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 167 --IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
             +EA  LF+  +  G+ P ++ FN LI+G C  G +  A +L+ +M    +H D VTY 
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           T+++G C+ G  + A  LL +M+   IKPD +        Y+A+I  LCK+     A+ L
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVV-------IYSAIIDRLCKDGHHSDAQYL 318

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             EM+ KGI P+  TY  +I+G  S  + +++
Sbjct: 319 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDA 350



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 36/235 (15%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD  T+ + +   C+  R++E  ++L ++   GLV    TYNTLI G+C   NL  A  
Sbjct: 429 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488

Query: 67  FRDEMVKQGIMPTAST-----------------------------------YNLLIHELL 91
              EM+  G+ P   T                                   YN++IH + 
Sbjct: 489 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMC 548

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
              K+ EA D+   +   G+ PD  TYN++I+G+C       A  L  +M   G +P   
Sbjct: 549 KGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNS 608

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           TY +LI    K   + ++ +L     + G   D      + D   T+G ++++FS
Sbjct: 609 TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGRLDKSFS 662



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 8/193 (4%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A    D M+      T +    +I V  + NR   A  L+     + +  +I  FN LI 
Sbjct: 90  AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIK 149

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI-- 251
             C    +  + S   ++ ++   PD VT+NTL+HG C + ++ EA  L   M   G   
Sbjct: 150 CFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE 209

Query: 252 ------KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                 +   I   P  +T+N LI GLC       A  L+ +MV KG+  D  TY +++ 
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 306 GIASVDKAAESSN 318
           G+  +     + N
Sbjct: 270 GMCKMGDTKSALN 282



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
            GV+PD  TY   +SG C +  + +A+ +  +MK+NG  P   TYNTLI G    G ++ 
Sbjct: 566 HGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625

Query: 64  AFSFRDEMVKQGIMPTASTYNLL 86
           +     EM   G    A T  ++
Sbjct: 626 SIELISEMRSNGFSGDAFTIKMV 648



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +PD+ TY + + G  K G ++++  ++ +M+ NG    A T   + D     G 
Sbjct: 598 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGR 656

Query: 61  LEMAFS 66
           L+ +FS
Sbjct: 657 LDKSFS 662


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 171/344 (49%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD   Y + + G+CKEG LE A+ +L +M   GL P  V YNT++ G C+   
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM ++       T+N+L+        +    ++L++M   G +PD ITY  
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G   +A  L   M   G +P  ++YT ++  L    R ++A++L    + +G
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V FN LI+  C  G +E+A  LLK+M      PD ++Y+T++ G  + GK EEA 
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
            LL+ M  +GI P+ I ++                               + YNA+I  L
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK  E D A +    MVS G  P+++TY  LI+G+AS   A E+
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 137/256 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  TY + ++G CKEG ++EA  +L+ M   G  P  V+Y  ++ G C+ G 
Sbjct: 382 MLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M++QG  P   T+N LI+ L  +  + +A ++LK+M   G  PD I+Y+ 
Sbjct: 442 WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 501

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L + M++KGI P  + Y+S+   LS++ R+ +  Q+F+N     
Sbjct: 502 VIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT 561

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V++NA+I   C     +RA      M      P+E TY  L+ G   +G  +EA+
Sbjct: 562 IRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQ 621

Query: 241 RLLDQMKRRGIKPDHI 256
            LL ++  RG    H+
Sbjct: 622 ELLSELCSRGALRKHL 637



 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++YT+   V G+C  GR+ +A  +L++M   G  P    Y+ +++  C  G    + 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              + M  +G        NL+++ +  +  + EA  +L+++   G   D ++YN ++ G 
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C          L DEM+     P ++T+ +LI  L +        ++       G  PDI
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            M+  +IDG C  G++E A  +L  M    + P+ V YNT++ G C   + +EA  LL +
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M ++    D +       T+N L+   C+N   D   ELL +M+S G  PD  TY ++I 
Sbjct: 347 MFQKDCPLDDV-------TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 306 GIA 308
           G  
Sbjct: 400 GFC 402



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 142/294 (48%), Gaps = 10/294 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y + V+G C+ G+L  A R+   +    + P A T+  ++ G C +G +  A    DEM
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             +G  P    Y++++           +  +L+ M  KG   D+   N+++N  C  G  
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A  L  ++   G +  +++Y +++  L    R  + ++L +  +     P+IV FN L
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTL 257

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I   C NG  ER   +L +M      PD   Y T++ G C++G +E A  +L++M   G+
Sbjct: 258 IGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           KP+ +        YN +++GLC  +    AEELL EM  K    DD T+  L++
Sbjct: 318 KPNVV-------CYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 31/221 (14%)

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + YN ++ GYCR G    A  L   +    + P   T+  ++  L  + R+ +A ++ + 
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
              KG  P   M++ +++  C +G    +  +L+ M       D    N +++  C QG 
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGC 196

Query: 236 VEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNA 267
           V+EA  LL ++   G + D +S+N                            P  +T+N 
Sbjct: 197 VDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNT 256

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           LI  LC+N   +   E+L +M   G TPD   Y ++I+GI 
Sbjct: 257 LIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGIC 297


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 166/313 (53%), Gaps = 8/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+   + S ++G+CK G +++A  MLE+M   G  P   T+  LIDG C KG  E A
Sbjct: 293 GLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKA 352

Query: 65  FSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           F    ++V+     P   TY  +I+    E K+  A+ +L  M E+G+VP++ TY  LI+
Sbjct: 353 FRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLID 412

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+ GN  +A+ L D M  +G  P + TY ++I  L K+ R  EA +L    L  G+  
Sbjct: 413 GHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHA 472

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +  LI   C   + ++A ++   M ++ + PD  TYN L+   CRQ KVEE+ +L 
Sbjct: 473 DKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLF 532

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++    G+ P       T+ TY ++I G C++     A +   +M   G  PD  TY +L
Sbjct: 533 EEAVGLGLLP-------TKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGAL 585

Query: 304 IEGIASVDKAAES 316
           I G+ +  K  E+
Sbjct: 586 ISGLCNESKLDEA 598



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 155/285 (54%), Gaps = 9/285 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S   +P+ YTY   ++G CKE +L  A  +L +MKE GLVP   TY  LIDG+C  GN
Sbjct: 360 VRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGN 419

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+   D M K+G  P   TYN +I  L  + +  EA  +L+   + G+  D +TY I
Sbjct: 420 FGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTI 479

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +CR  + K+A ++   M   G+QP M TY  LI    +Q ++ E+++LFE  +  G
Sbjct: 480 LISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLG 539

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP    + ++I G+C +G+I  A     +M      PD +TY  L+ G C + K++EA 
Sbjct: 540 LLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEAC 599

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           +L + M   G+ P  +    TR+T   L    CK  +GD A  ++
Sbjct: 600 QLYETMIDNGLSPCEV----TRVT---LAYEYCK--QGDSATAMI 635



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 159/317 (50%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PDS +Y   V G C+ GR+ +  R L+ M E G      T   +I  +  KG 
Sbjct: 219 MLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGF 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF +  + V+ G+ P    ++ LI+ L     + +A +ML+EM  KG  P+  T+  
Sbjct: 279 VNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTA 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C+ G  +KAF L  +++     +P + TYT +I    K+ ++  A+ L      +
Sbjct: 339 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQ 398

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+   +  LIDGHC  GN  RA+ L+  M +    P+  TYN ++ G C++G+  EA
Sbjct: 399 GLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEA 458

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +LL    RRG+K      +  ++TY  LI   C+  +   A  +   M   G+ PD +T
Sbjct: 459 YKLL----RRGLKS---GLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHT 511

Query: 300 YFSLIEGIASVDKAAES 316
           Y  LI       K  ES
Sbjct: 512 YNVLIATFCRQKKVEES 528



 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 154/304 (50%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M  +G +P+ YT+ + + G+CK+G  E+A R+ L+ ++ +   P   TY  +I+GYC + 
Sbjct: 324 MVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEE 383

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A      M +QG++P  +TY  LI           A +++  MG++G  P+  TYN
Sbjct: 384 KLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYN 443

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G C+ G   +A+ L    +  G+    +TYT LI    +Q    +A  +F      
Sbjct: 444 AIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKV 503

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD+  +N LI   C    +E +  L +E   + + P + TY +++ G CR G +  A
Sbjct: 504 GLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSA 563

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +   +M+  G KPD I       TY ALI GLC   + D A +L   M+  G++P + T
Sbjct: 564 IKFFHKMRDYGCKPDSI-------TYGALISGLCNESKLDEACQLYETMIDNGLSPCEVT 616

Query: 300 YFSL 303
             +L
Sbjct: 617 RVTL 620



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 156/294 (53%), Gaps = 8/294 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G+L+EA  M+ +M+ +GLV  A   N +ID     G ++ A    DEM+ + ++P +++Y
Sbjct: 172 GKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSY 231

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            L++       ++ + D  LK+M E+G   D+ T  ++I+ +   G   +AF    + + 
Sbjct: 232 KLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQ 291

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G+ P ++ ++SLI  L K   + +A ++ E  + KG  P++    ALIDG C  G  E+
Sbjct: 292 MGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEK 351

Query: 204 AFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           AF L  ++ R   + P+  TY  +++G C++ K+  A  LL +MK +G+ P+        
Sbjct: 352 AFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPN-------T 404

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY  LI G CK      A EL+  M  +G TP+  TY ++I+G+    +  E+
Sbjct: 405 NTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEA 458



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 135/256 (52%), Gaps = 6/256 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           ++  +   G L+ A +   EM   G++  A   N +I   L    +  A+ +  EM ++ 
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRA 223

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           +VPDS +Y +++ GYCR G          +MI +G      T T +I   S++  +  A 
Sbjct: 224 VVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAF 283

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
             F+ ++  G+ P+++ F++LI+G C  G+I++AF +L+EM R    P+  T+  L+ G 
Sbjct: 284 WYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGL 343

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C++G  E+A RL  ++ R        ++ P   TY  +I G CK ++ + AE LL  M  
Sbjct: 344 CKKGWTEKAFRLFLKLVRSD------NYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKE 397

Query: 291 KGITPDDNTYFSLIEG 306
           +G+ P+ NTY  LI+G
Sbjct: 398 QGLVPNTNTYTCLIDG 413



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 4/146 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +PDS TYG+ +SG+C E +L+EA ++ E M +NGL P  VT  TL   YC +G+
Sbjct: 570 MRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGD 629

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    + + K+  + T +T   LI +L  E+K+  A     ++ +K +  D IT   
Sbjct: 630 SATAMIILERLEKKLWIRTVNT---LIRKLCSEKKVGVAALFFHKLLDKDLNVDRITLAA 686

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI 146
                C   N     S   E I KGI
Sbjct: 687 FTTA-CYESNKFALVSDLSERISKGI 711


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 118 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 177

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 178 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 237

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    K + PD
Sbjct: 238 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPD 297

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  DEV Y  L+ G C++G+  +A ++L 
Sbjct: 298 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLR 357

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 358 EMLNVGLKPD-------SRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 410

Query: 305 EG 306
            G
Sbjct: 411 NG 412



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 173/333 (51%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 43  VETKGTQRSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 102

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 103 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 162

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 163 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 222

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 223 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 282

Query: 240 RRLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQG 271
             L+D+M  + +KPD I++                                + Y ALI G
Sbjct: 283 HHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISG 342

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM++ G+ PD  TY  +I
Sbjct: 343 LCQEGRSVDAEKMLREMLNVGLKPDSRTYTMII 375



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 134/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  K + PD ITY  
Sbjct: 244 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTT 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L  G
Sbjct: 304 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 364 LKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 178

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 179 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 213


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K    +P+S TY   + G+C+ GRLEEA ++ ++M E G  P+  TY  LI   C+ G  
Sbjct: 234 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMT 293

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A    DEM  +  +P   TY +LI  L  E K+ EA+ + ++M + G+ P  IT+N L
Sbjct: 294 DKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL 353

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           INGYC+ G    AF L   M     +P + TY  L+  L + ++  +A  L    +  G+
Sbjct: 354 INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGL 413

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           LPD V +N L+DG C  G +  AF++   M+   + PD  T+  L+ G C+ G++E+A  
Sbjct: 414 LPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANG 473

Query: 242 LLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGLC 273
           +L  M ++GI  D ++F                              T  T+N  +  L 
Sbjct: 474 ILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALG 533

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           K+ + + A  +L +M+  G+ P   T+  LIEG     + A S
Sbjct: 534 KDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALS 576



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 175/341 (51%), Gaps = 42/341 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++   P+ +TY   +  +C+EG++EEA+ +  +M ++GL P  +T+N LI+GYC +G 
Sbjct: 303 MATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGW 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M K    P   TYN L+  L    K  +A  +L+ + + G++PD +TYNI
Sbjct: 363 VVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNI 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+ G    AF++ + M   G++P   T+T+LI  L K  R+ +A+ +  + + KG
Sbjct: 423 LVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKG 482

Query: 181 MLPDIVMFNALIDGHCTNG-----------------------------------NIERAF 205
           +  D V F ALIDGHC  G                                    +  A 
Sbjct: 483 ISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEAN 542

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           ++L +M +  + P  VT+  L+ G CR G+   + ++L++MK+ G  P+         TY
Sbjct: 543 AMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN-------VYTY 595

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +I GLC N   + AE +L  M S G++P+  TY  L++ 
Sbjct: 596 TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 636



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 161/313 (51%), Gaps = 7/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+    +P+  TY   + G+C+  +  +A  +L ++ +NGL+P  VTYN L+DG+C +G 
Sbjct: 373 MEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQ 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L MAF+  + M   G+ P   T+  LI  L    ++ +A+ +L  M +KGI  D +T+  
Sbjct: 433 LNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTA 492

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G AK    L + M+      T  T+   +  L K  ++ EA+ +    +  G
Sbjct: 493 LIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYG 552

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P +V    LI+GHC  G    +  +L+ M +    P+  TY  +++G C  G+VEEA 
Sbjct: 553 LVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAE 612

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  M   G+ P+H        TY  L++   K    D A +++  MV  G  P+ + Y
Sbjct: 613 TILFSMSSFGVSPNH-------FTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 665

Query: 301 FSLIEGIASVDKA 313
            +L+ G    + A
Sbjct: 666 SALLSGFVLSNTA 678



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 164/318 (51%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G       Y + V+ +CK G ++ A     ++   G         +L+   C + +
Sbjct: 162 MVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 221

Query: 61  LEMAFSFRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L  AF   ++M K +   P + TY++LIH L    ++ EA  + +EM EKG  P + TY 
Sbjct: 222 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 281

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LI   C  G   KA  + DEM  K   P + TYT LI  L ++ ++ EA+ +F   L  
Sbjct: 282 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 341

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P I+ FNALI+G+C  G +  AF LL  M++    P+  TYN LM G CR  K  +A
Sbjct: 342 GLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKA 401

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             LL ++   G+ PD       R+TYN L+ G CK  + ++A  +   M S G+ PD  T
Sbjct: 402 FLLLRRVVDNGLLPD-------RVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 454

Query: 300 YFSLIEGIASVDKAAESS 317
           + +LI+G+  + +  +++
Sbjct: 455 FTALIDGLCKLGRLEQAN 472



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 156/315 (49%), Gaps = 23/315 (7%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           ++T+  F+  + K+ +L EA+ ML +M + GLVP+ VT+  LI+G+C  G   ++    +
Sbjct: 522 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 581

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
            M + G  P   TY ++I+ L    ++ EA+ +L  M   G+ P+  TY +L+  + + G
Sbjct: 582 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 641

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
              +AF +   M+  G QP    Y++L+  FVLS  N  I A  L     + G L    +
Sbjct: 642 RLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLS--NTAIGARALS----STGDLDARSL 695

Query: 188 FNALIDGHCTNGNIER------AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            +   D +C + ++ R      A  +  E+ +  V P E  YN L+ G C++G++ EA +
Sbjct: 696 SSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQ 754

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L   M + G+ PD           +++I+  CK  + D   E ++ ++     P   +Y 
Sbjct: 755 LTQDMVKHGLFPDK--------AISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYC 806

Query: 302 SLIEGIASVDKAAES 316
            +I G+ +  +  E+
Sbjct: 807 WVIHGLRNEGRVQEA 821



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P+ YTY   ++G+C  GR+EEA  +L  M   G+ P   TY  L+  +   G 
Sbjct: 583 MKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGR 642

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM--LKEMGEKGIVPDSITY 118
           L+ AF     MVK G  P +  Y+ L+   ++    + A  +    ++  + +  +    
Sbjct: 643 LDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDN 702

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N L +   R  +   A  + DE+   G+ PT   Y  L+  L K+ R+IEADQL ++ + 
Sbjct: 703 NCLSSHVFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVK 761

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+ PD  + +++I+ +C     +     +K +   K  P   +Y  ++HG   +G+V+E
Sbjct: 762 HGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQE 820

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
           A++L+  + R     + +   P+       I+ L K +E D
Sbjct: 821 AQKLVSDLVRHTGIEEEVEVTPS-------IEFLMKEEEDD 854



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 122/304 (40%), Gaps = 64/304 (21%)

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D M + G   +   Y+ L+  L        A  + + M  +G V   I Y  ++N  C+ 
Sbjct: 125 DGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN 184

Query: 129 G------------------------------NAKK-----AFSLHDEMI-HKGIQPTMLT 152
           G                              N ++     AF + ++M   +  +P  +T
Sbjct: 185 GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVT 244

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y+ LI  L +  R+ EA QL +  + KG  P    +  LI   C  G  ++A  +L EM 
Sbjct: 245 YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMA 304

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------- 259
                P+  TY  L+   CR+GK+EEA  +  +M + G+ P  I+FN             
Sbjct: 305 TKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVV 364

Query: 260 ---------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                          P   TYN L++GLC+  +   A  LLR +V  G+ PD  TY  L+
Sbjct: 365 SAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILV 424

Query: 305 EGIA 308
           +G  
Sbjct: 425 DGFC 428



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 43/215 (20%)

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           D M   G + +   Y++L+  L+K N    A  ++   + +G +   + +  +++  C N
Sbjct: 125 DGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN 184

Query: 199 GNIE-----------------------------------RAFSLLKEMDRMK-VHPDEVT 222
           G ++                                    AF + ++M + +   P+ VT
Sbjct: 185 GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVT 244

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y+ L+HG C  G++EEA +L  +M  +G +P       TR TY  LI+  C     D A 
Sbjct: 245 YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPS------TR-TYTVLIKAKCDIGMTDKAM 297

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           ++L EM +K   P+ +TY  LI+ +    K  E++
Sbjct: 298 KMLDEMATKACVPNVHTYTILIDRLCREGKIEEAN 332


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 171/316 (54%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   T+ + ++G+C EGR+ EA+ ++ +M   GL    VTY T+++G C  G+
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   +M +  I P    Y+ +I  L  +    +A  +  EM EKGI P+  TYN 
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C  G    A  L  +MI + I P +LT+ +LI    K+ ++ EA++L +  L + 
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +N++I G C +   + A    K M  +   PD VT+NT++   CR  +V+E  
Sbjct: 181 IFPDTVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTIIDVYCRAKRVDEGM 236

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL ++ RRG+       N T  TYN LI G C+    + A++L +EM+S G+ PD  T 
Sbjct: 237 QLLREISRRGLVA-----NTT--TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITC 289

Query: 301 FSLIEGIASVDKAAES 316
             L+ G    +K  E+
Sbjct: 290 NILLYGFCENEKLEEA 305



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 165/336 (49%), Gaps = 32/336 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D  TYG+ V+GMCK G  + A  +L +M+E  + P  V Y+ +ID  C  G+
Sbjct: 36  MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGH 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+++GI P   TYN +I       +  +A  +L++M E+ I PD +T+N 
Sbjct: 96  HSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G   +A  L DEM+H+ I P  +TY S+I+   K NR  +A  +F+   +  
Sbjct: 156 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 213

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V FN +ID +C    ++    LL+E+ R  +  +  TYNTL+HG C    +  A+
Sbjct: 214 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 271

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
            L  +M   G+ PD I+ N                               + YN +I G+
Sbjct: 272 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 331

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + D A +L   +   G+ PD  TY  +I G  
Sbjct: 332 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 367



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 164/349 (46%), Gaps = 41/349 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++PD   Y + +  +CK+G   +A  +  +M E G+ P   TYN +IDG+C+ G 
Sbjct: 71  MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++ I P   T+N LI   + E K+ EA+ +  EM  + I PD++TYN 
Sbjct: 131 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 190

Query: 121 LINGYC---RCGNAKKAFSLHD----------------------------EMIHKGIQPT 149
           +I G+C   R  +AK  F L                              E+  +G+   
Sbjct: 191 MIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVAN 250

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY +LI    + + +  A  LF+  ++ G+ PD +  N L+ G C N  +E A  L +
Sbjct: 251 TTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE 310

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            +   K+  D V YN ++HG C+  KV+EA  L   +   G++PD         TYN +I
Sbjct: 311 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMI 363

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
            G C       A  L  +M   G  PD++TY +LI G      +DK+ E
Sbjct: 364 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 412



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 149/296 (50%), Gaps = 11/296 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+ + +S   KEG+L EA ++ ++M    + P  VTYN++I G+C    
Sbjct: 141 MIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M      P   T+N +I      +++ E   +L+E+  +G+V ++ TYN 
Sbjct: 201 FDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 256

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C   N   A  L  EMI  G+ P  +T   L++   +  ++ EA +LFE      
Sbjct: 257 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 316

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V +N +I G C    ++ A+ L   +    V PD  TYN ++ G C +  + +A 
Sbjct: 317 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 376

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L  +MK  G +PD+        TYN LI+G  K  E D + EL+ EM S G + D
Sbjct: 377 VLFHKMKDNGHEPDN-------STYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD 425



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 36/235 (15%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD  T+ + +   C+  R++E  ++L ++   GLV    TYNTLI G+C   NL  A  
Sbjct: 213 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 272

Query: 67  FRDEMVKQGIMPTAST-----------------------------------YNLLIHELL 91
              EM+  G+ P   T                                   YN++IH + 
Sbjct: 273 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMC 332

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
              K+ EA D+   +   G+ PD  TYN++I+G+C       A  L  +M   G +P   
Sbjct: 333 KGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNS 392

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           TY +LI    K   + ++ +L     + G   D      + D   T+G ++++FS
Sbjct: 393 TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGRLDKSFS 446



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 72/152 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV PD+ T    + G C+  +LEEA  + E ++ + +    V YN +I G C    
Sbjct: 277 MISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+     +   G+ P   TYN++I     +  + +A+ +  +M + G  PD+ TYN 
Sbjct: 337 VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNT 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           LI G  + G   K+  L  EM   G      T
Sbjct: 397 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 428



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
            GV+PD  TY   +SG C +  + +A+ +  +MK+NG  P   TYNTLI G    G ++ 
Sbjct: 350 HGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 409

Query: 64  AFSFRDEMVKQGIMPTASTYNLL 86
           +     EM   G    A T  ++
Sbjct: 410 SIELISEMRSNGFSGDAFTIKMV 432



 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +PD+ TY + + G  K G ++++  ++ +M+ NG    A T   + D     G 
Sbjct: 382 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGR 440

Query: 61  LEMAFS 66
           L+ +FS
Sbjct: 441 LDKSFS 446



 Score = 38.1 bits (87), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           I   P  +T+N LI GLC       A  L+ +MV KG+  D  TY +++ G+  +     
Sbjct: 4   IGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKS 63

Query: 316 SSN 318
           + N
Sbjct: 64  ALN 66


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+   ++ +C EG  E++S ++++M+++G  PT VTYNT++  YC KG 
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M  +G+     TYN+LIH+L    ++ +   +L++M ++ I P+ +TYN 
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+   G    A  L +EM+  G+ P  +T+ +LI     +    EA ++F    AKG
Sbjct: 304 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  L+DG C N   + A      M R  V    +TY  ++ G C+ G ++EA 
Sbjct: 364 LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAV 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M + GI PD +       TY+ALI G CK      A+E++  +   G++P+   Y
Sbjct: 424 VLLNEMSKDGIDPDIV-------TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 476

Query: 301 FSLI 304
            +LI
Sbjct: 477 STLI 480



 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P  YT  + +  + K G        L++M +  + P   T+N LI+  C +G+ E +
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M K G  PT  TYN ++H    + +   A ++L  M  KG+  D  TYN+LI+ 
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     K + L  +M  + I P  +TY +LI   S + +++ A QL    L+ G+ P+
Sbjct: 273 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V FNALIDGH + GN + A  +   M+   + P EV+Y  L+ G C+  + + AR    
Sbjct: 333 HVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYM 392

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +MKR G+          R+TY  +I GLCKN   D A  LL EM   GI PD  TY +LI
Sbjct: 393 RMKRNGVCVG-------RITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI 445

Query: 305 EGIASVDK 312
            G   V +
Sbjct: 446 NGFCKVGR 453



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 6/318 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY + ++G CK GR + A  ++ ++   GL P  + Y+TLI   C  G 
Sbjct: 429 MSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M+ +G      T+N+L+  L    K+ EA++ ++ M   GI+P++++++ 
Sbjct: 489 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 548

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY   G   KAFS+ DEM   G  PT  TY SL+  L K   + EA++  ++  A  
Sbjct: 549 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVP 608

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D VM+N L+   C +GN+ +A SL  EM +  + PD  TY +L+ G CR+GK   A 
Sbjct: 609 AAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI 668

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               + + RG      +  P ++ Y   + G+ K  +         +M + G TPD  T 
Sbjct: 669 LFAKEAEARG------NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTT 722

Query: 301 FSLIEGIASVDKAAESSN 318
            ++I+G + + K  ++++
Sbjct: 723 NAMIDGYSRMGKIEKTND 740



 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G+ P   +YG  + G+CK    + A     +MK NG+    +TY  +IDG C  G 
Sbjct: 359 MEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGF 418

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM K GI P   TY+ LI+      +   A +++  +   G+ P+ I Y+ 
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYST 478

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   CR G  K+A  +++ MI +G      T+  L+  L K  ++ EA++      + G
Sbjct: 479 LIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V F+ LI+G+  +G   +AFS+  EM ++  HP   TY +L+ G C+ G + EA 
Sbjct: 539 ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAE 598

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + L  +       D +        YN L+  +CK+     A  L  EMV + I PD  TY
Sbjct: 599 KFLKSLHAVPAAVDTV-------MYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 651

Query: 301 FSLIEGIA 308
            SLI G+ 
Sbjct: 652 TSLISGLC 659



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+GV  D  TY   +  +C+  R+ +   +L  M++  + P  VTYNTLI+G+ N+G 
Sbjct: 254 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    +EM+  G+ P   T+N LI   + E    EA  M   M  KG+ P  ++Y +
Sbjct: 314 VLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+      A   +  M   G+    +TYT +I  L K   + EA  L       G
Sbjct: 374 LLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++ALI+G C  G  + A  ++  + R+ + P+ + Y+TL++  CR G ++EA 
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ + M   G   DH        T+N L+  LCK  +   AEE +R M S GI P+  ++
Sbjct: 494 RIYEAMILEGHTRDH-------FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 546

Query: 301 FSLIEG 306
             LI G
Sbjct: 547 DCLING 552



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           M  R + PDSYTY S +SG+C++G+   A    ++ +  G ++P  V Y   +DG    G
Sbjct: 639 MVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAG 698

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +    FR++M   G  P   T N +I       K+ + +D+L EMG +   P+  TYN
Sbjct: 699 QWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYN 758

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL++GY +  +   +F L+  +I  GI P  LT  SL+  + + N +    ++ + F+ +
Sbjct: 759 ILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICR 818

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D   FN LI   C NG I  AF L+K M  + +  D+ T + ++    R  + +E+
Sbjct: 819 GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 878

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R +L +M ++GI P+          Y  LI GLC+  +   A  +  EM++  I P +  
Sbjct: 879 RMVLHEMSKQGISPE-------SRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVA 931

Query: 300 YFSLIEGIASVDKAAESS 317
             +++  +A   KA E++
Sbjct: 932 ESAMVRALAKCGKADEAT 949



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 8/290 (2%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G+ PD  T  S V G+C+   LE   ++L+     G+     T+N LI   C  G +  A
Sbjct: 784  GILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWA 843

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            F     M   GI     T + ++  L    +  E+  +L EM ++GI P+S  Y  LING
Sbjct: 844  FDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLING 903

Query: 125  YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             CR G+ K AF + +EMI   I P  +  ++++  L+K  +  EA  L    L   ++P 
Sbjct: 904  LCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPT 963

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            I  F  L+   C NGN+  A  L   M    +  D V+YN L+ G C +G +  A  L +
Sbjct: 964  IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYE 1023

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG-DLAEELLREMVSKGI 293
            +MK  G       F     TY ALI+GL   +     A+ +L++++++G 
Sbjct: 1024 EMKGDG-------FLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1066



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 161/388 (41%), Gaps = 78/388 (20%)

Query: 2    KSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            ++RG V P+   Y  FV GM K G+ +      EQM   G  P  VT N +IDGY   G 
Sbjct: 675  EARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGK 734

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIH----------ELLMERKMV------------- 97
            +E       EM  Q   P  +TYN+L+H            L+ R ++             
Sbjct: 735  IEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHS 794

Query: 98   ------EAD------DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E++       +LK    +G+  D  T+N+LI+  C  G    AF L   M   G
Sbjct: 795  LVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 854

Query: 146  IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            I     T  +++ VL++ +R  E+  +      +G+ P+   +  LI+G C  G+I+ AF
Sbjct: 855  ISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAF 914

Query: 206  S-----------------------------------LLKEMDRMKVHPDEVTYNTLMHGR 230
                                                LL+ M +MK+ P   ++ TLMH  
Sbjct: 915  VVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLC 974

Query: 231  CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
            C+ G V EA  L   M   G+K D +S       YN LI GLC   +  LA EL  EM  
Sbjct: 975  CKNGNVIEALELRVVMSNCGLKLDLVS-------YNVLITGLCAKGDMALAFELYEEMKG 1027

Query: 291  KGITPDDNTYFSLIEGIASVDKAAESSN 318
             G   +  TY +LI G+ + + A   ++
Sbjct: 1028 DGFLANATTYKALIRGLLARETAFSGAD 1055



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S Y++LI   L E  + ++ ++ + MG  G  P   T N ++    + G     +S   E
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+ + I P + T+  LI VL  +    ++  L +     G  P IV +N ++  +C  G 
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            + A  LL  M    V  D  TYN L+H  CR  ++ +   LL  M++R I P+ +    
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---- 299

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              TYN LI G     +  +A +LL EM+S G++P+  T+ +LI+G
Sbjct: 300 ---TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDG 342



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 130/275 (47%), Gaps = 26/275 (9%)

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLI---HELLMERKMVEADDMLKEM----GEKGIVPD 114
           ++A  F   +VKQ  + T     L+    H L+  R    A  +LKE+    G+   V  
Sbjct: 51  KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFG 110

Query: 115 SI------------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           ++             Y+ILI  Y R G  + +  +   M   G  P++ T  +++  + K
Sbjct: 111 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 170

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
               +      +  L + + PD+  FN LI+  C  G+ E++  L+++M++    P  VT
Sbjct: 171 SGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVT 230

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           YNT++H  C++G+ + A  LLD MK +G+  D         TYN LI  LC++       
Sbjct: 231 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDAD-------VCTYNMLIHDLCRSNRIAKGY 283

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            LLR+M  + I P++ TY +LI G ++  K   +S
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIAS 318



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S G+  D  T  + VS + +  R +E+  +L +M + G+ P +  Y  LI+G C  G+
Sbjct: 850  MTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGD 909

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ AF  ++EM+   I P     + ++  L    K  EA  +L+ M +  +VP   ++  
Sbjct: 910  IKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTT 969

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++  C+ GN  +A  L   M + G++  +++Y  LI  L  +  M  A +L+E     G
Sbjct: 970  LMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG 1029

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFS 206
             L +   + ALI G       E AFS
Sbjct: 1030 FLANATTYKALIRGLLAR---ETAFS 1052


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 171/362 (47%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC---- 56
           M + G  P    + S +   C+ G    A ++L++M + G  P  V YN LI G C    
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 57  ------------------------NK-------------GNLEMAFSFRDEMVKQGIMPT 79
                                   NK             G  E A+S   EM+ +G +P 
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            STY+ +I  L    K+  A  + +EM    +VPD  TY ILI+ +C+ G  ++A    D
Sbjct: 480 TSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFD 539

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM+  G  P ++TYT+LI    K  +M  A++LFE  L++G +P++V + ALIDGHC +G
Sbjct: 540 EMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSG 599

Query: 200 NIERAFSLLKEM----------------DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            IE+A  +   M                D     P+  TY  L+ G C+  KV+EAR LL
Sbjct: 600 QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL 659

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M   G +P+HI        Y+ALI G CK  + D A+ +  +M  +G  P+  TY SL
Sbjct: 660 DVMSVEGCEPNHI-------VYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 304 IE 305
           I+
Sbjct: 713 ID 714



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 171/355 (48%), Gaps = 58/355 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD+ TY   +  +C   +++ A  + E+MK N +VP   TY  LID +C  G 
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A  + DEMV+ G  P   TY  LIH  L  RKM  A+++ + M  +G +P+ +TY  
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 121 LINGYCRCGNAKKAFSLHDEM--------------IHKG--IQPTMLTYTSLIFVLSKQN 164
           LI+G+C+ G  +KA  ++  M              I  G    P + TY +L+  L K +
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN------------------------ 200
           ++ EA  L +    +G  P+ ++++ALIDG C  G                         
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 201 --IERAFS------LLKEMDRM---KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
             I+R F        LK + RM      P+ + Y  ++ G C+ GK +EA RL+  M+ +
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           G  P+ +       TY A+I G  K  + D   EL+R+M +KG  P+  TY  LI
Sbjct: 771 GCHPNVV-------TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLI 818



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+  Y   +SG+C+    EEA   L +M+ +  +P  VTY  L+ G   K  L       
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRIL 357

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M+ +G  P+   +N LIH          A  +LK+MG+ G  P  + YNILI G   C
Sbjct: 358 SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI--C 415

Query: 129 GNAK--------KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           GN K         A   + EM+   +    +  ++L   L    +  +A  +    ++KG
Sbjct: 416 GNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKG 475

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD   ++ +I   C    ++ AF L +EM    V PD  TY  L+   C+ G +++AR
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQAR 535

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +  D+M R G  P+ +       TY ALI    K ++   A EL   M+S+G  P+  TY
Sbjct: 536 KWFDEMVRDGCAPNVV-------TYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 589 TALIDG 594



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 155/313 (49%), Gaps = 14/313 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+ +TYG+ V G+CK  +++EA  +L+ M   G  P  + Y+ LIDG+C  G L+ A   
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M ++G  P   TY+ LI  L  ++++  A  +L  M E    P+ I Y  +I+G C+
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A+ L   M  KG  P ++TYT++I    K  ++ +  +L     AKG  P+ V 
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI+  C  G ++ A  LL EM +         Y  ++ G  R+  +     LLD++ 
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG--LLDEI- 870

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS--KGITPDDNTYFSLIE 305
                 ++++  P    Y  LI   CK    +LA EL +EM S       D + Y SLIE
Sbjct: 871 -----AENVAV-PIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIE 924

Query: 306 GI---ASVDKAAE 315
            +   + VDKA E
Sbjct: 925 SLSLASKVDKAFE 937



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 120/256 (46%), Gaps = 4/256 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+ YTY S +  + K+ RL+ A ++L +M EN   P  + Y  +IDG C  G 
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+     M ++G  P   TY  +I       K+ +  +++++MG KG  P+ +TY +
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G    A  L DEM        M  Y  +I   +++   I +  L +      
Sbjct: 817 LINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNRE--FIISLGLLDEIAENV 874

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH--PDEVTYNTLMHGRCRQGKVEE 238
            +P I  +  LID  C  G +E A  L KEM     +   D+  Y++L+       KV++
Sbjct: 875 AVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDK 934

Query: 239 ARRLLDQMKRRGIKPD 254
           A  L   M +RG  P+
Sbjct: 935 AFELYADMIKRGGIPE 950



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G    A   L ++K+ G  P+ +TYN L+  +     L+ A+    EM   G     
Sbjct: 208 CRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDG 267

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            T    +H L    +  EA  ++++   K    D++ Y  +I+G C     ++A      
Sbjct: 268 YTLGCFVHLLCKAGRWREALALIEKEEFK---LDTVIYTQMISGLCEASLFEEAMDFLSR 324

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M      P ++TY  L+    ++ ++    ++    + +G  P   +FN+LI  +C +G+
Sbjct: 325 MRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFN 259
              A+ LLK+M      P  V YN L+ G C   K+     L    K  G   D H+  N
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
             ++  + L + LC   + + A  ++REM+SKG  PD +TY  +I  + +  K 
Sbjct: 445 --KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 39/253 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+   Y   + G+CK G+ +EA R++  M+E G  P  VTY  +IDG+   G 
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------HELLME-------------RK 95
           ++       +M  +G  P   TY +LI            H+LL E             RK
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 96  MVEADD--------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI----H 143
           ++E  +        +L E+ E   VP    Y ILI+ +C+ G  + A  LH EM     +
Sbjct: 852 VIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSY 911

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
                 +  Y+SLI  LS  +++ +A +L+ + + +G +P++ +F  L+ G       E 
Sbjct: 912 SAADKDL--YSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEE 969

Query: 204 AFSLLKEMDRMKV 216
           A  L   + +M V
Sbjct: 970 ALQLSDCICQMMV 982



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 111/276 (40%), Gaps = 10/276 (3%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           ++ G   T   Y+ L++     GN  +   F  E+  +         N+LI +       
Sbjct: 154 RQIGYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLW 213

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
             A + L  + + G  P  +TYN L+  +        A+ +H EM   G      T    
Sbjct: 214 NVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           + +L K  R  EA  L E    +    D V++  +I G C     E A   L  M     
Sbjct: 274 VHLLCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSC 330

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P+ VTY  L+ G  R+ ++   +R+L  M   G         P+R  +N+LI   C++ 
Sbjct: 331 IPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCY-------PSRRIFNSLIHAYCRSG 383

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           +   A +LL++M   G  P    Y  LI GI   +K
Sbjct: 384 DYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 186/357 (52%), Gaps = 48/357 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNK 58
           M   G  PD ++Y   +  +C + +  +A  +L  M E G V  P AV YNT+IDG+  +
Sbjct: 170 MPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKE 229

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G++  A    +EMV++GI P  STYN +++ L   R M +A+ +L++M +KG++PD+ TY
Sbjct: 230 GDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTY 289

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR------------- 165
           N LI GY   G  K+A  +  +M  +GI P ++T  SL+  L K  +             
Sbjct: 290 NSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAM 349

Query: 166 ----------------------MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
                                 +++  +LF   L+ G+ PD  +FN LI  +   G ++R
Sbjct: 350 KGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDR 409

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  +  EM    V PD VTY+T++   CR GK+++A    +QM  +G+ P  IS      
Sbjct: 410 ATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPS-IS------ 462

Query: 264 TYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           TY+ LIQG C +  GDL  A++L+ +M++KG+ PD   +  +I  +  + +  ++ N
Sbjct: 463 TYHFLIQGFCTH--GDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQN 517



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 77/377 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY   V+ +CK   +++A  +L QM + G++P   TYN+LI GY + G 
Sbjct: 242 MVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQ 301

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---------- 110
            + A     +M  QGI+P   T N L+  L    K+ +A D+   M  KG          
Sbjct: 302 WKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKI 361

Query: 111 -------------------------IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                    I PDS  +N+LI  Y +CG   +A  + +EM  +G
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQG 421

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P ++TY+++I  L +  +M +A + F   + +G+ P I  ++ LI G CT+G++ +A 
Sbjct: 422 VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAK 481

Query: 206 SLLKEM-----------------------------------DRMKVHPDEVTYNTLMHGR 230
            L+ +M                                     + +HP+ + YNTLM G 
Sbjct: 482 DLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGY 541

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C  GK+E A R+ D M   GI+P+ +        Y  L+ G CK    D    L RE++ 
Sbjct: 542 CLVGKMENALRVFDVMVSAGIQPNVV-------VYGTLVNGYCKVGRIDEGLSLFREILH 594

Query: 291 KGITPDDNTYFSLIEGI 307
           KGI P    Y  ++ G+
Sbjct: 595 KGIKPSTTLYNIILHGL 611



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 165/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PDS+ +   +    K G L+ A+ +  +M+E G+ P  VTY+T+I   C  G 
Sbjct: 382 MLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGK 441

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+ QG+ P+ STY+ LI        +++A D++ +M  KG+ PD   +N 
Sbjct: 442 MDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNF 501

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN  C+ G    A ++ D  I  G+ P ++ Y +L+       +M  A ++F+  ++ G
Sbjct: 502 IINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAG 561

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V++  L++G+C  G I+   SL +E+    + P    YN ++HG  + G+   A+
Sbjct: 562 IQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAK 621

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M   GI  D       R TY+ ++ GL KN   D A  L +E+ +  +  D  T 
Sbjct: 622 VKFHEMTESGIAMD-------RYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTL 674

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+  + +  E+ +
Sbjct: 675 NIMIAGMFQIRRVEEAKD 692



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G + D ++Y   ++G   +G L + + +   M  +G+ P +  +N LI  Y   G 
Sbjct: 347 MAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGM 406

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM +QG+ P   TY+ +I  L    KM +A +   +M ++G+ P   TY+ 
Sbjct: 407 LDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHF 466

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  +M++KG++P +  +  +I  L K  R+++A  +F+  ++ G
Sbjct: 467 LIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIG 526

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++++N L+DG+C  G +E A  +   M    + P+ V Y TL++G C+ G+++E  
Sbjct: 527 LHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGL 586

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++  +GIK       P+   YN ++ GL +      A+    EM   GI  D  TY
Sbjct: 587 SLFREILHKGIK-------PSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTY 639

Query: 301 FSLIEGI 307
             ++ G+
Sbjct: 640 SIVLGGL 646



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 158/353 (44%), Gaps = 48/353 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+PD  TY + ++ +C+ G++++A     QM + G+ P+  TY+ LI G+C  G+
Sbjct: 417 MREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGD 476

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           L  A     +M+ +G+ P    +N +I+ L                              
Sbjct: 477 LLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNT 536

Query: 91  LMER-----KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LM+      KM  A  +   M   GI P+ + Y  L+NGYC+ G   +  SL  E++HKG
Sbjct: 537 LMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKG 596

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I+P+   Y  ++  L +  R + A   F      G+  D   ++ ++ G   N   + A 
Sbjct: 597 IKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAI 656

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP--TRL 263
            L KE+  M V  D  T N ++ G  +  +VEEA+ L   + R G+ P  ++++   T L
Sbjct: 657 LLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNL 716

Query: 264 TYNALIQ-----------GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
               L++             C+     L   ++RE++ K       TY S I+
Sbjct: 717 IKEGLVEEADDMFSSMENAGCEQPNSQLLNHVVRELLEKREIVRAGTYLSKID 769



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 69/347 (19%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI------------------------ 76
           L PT  TY  L+D        ++  +F  +++K G+                        
Sbjct: 104 LSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEAL 163

Query: 77  ------------MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNILI 122
                       +P   +Y +++  L  +RK  +AD++L+ M E G V  P+++ YN +I
Sbjct: 164 DILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVI 223

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + G+  KA  L +EM+ +GI P + TY  ++  L K   M +A+ +    + KG+L
Sbjct: 224 DGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVL 283

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD   +N+LI G+ + G  + A  + K+M    + PD VT N+LM   C+ GK+++AR +
Sbjct: 284 PDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDV 343

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D M  +G K D  S+                             P    +N LI+   K
Sbjct: 344 FDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAK 403

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSN 318
               D A  +  EM  +G+ PD  TY ++I     I  +D A E  N
Sbjct: 404 CGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFN 450



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 10/213 (4%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G + + P   TY IL++   R    K   +   +++  G+    +  ++L+  L +  R 
Sbjct: 100 GPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRT 159

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR--MKVHPDEVTY 223
            EA D L       G +PD+  +  ++   C++    +A  LL+ M        P+ V Y
Sbjct: 160 AEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAY 219

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           NT++ G  ++G V +A  L ++M +RGI PD         TYN ++  LCK +  D AE 
Sbjct: 220 NTVIDGFFKEGDVNKACDLFNEMVQRGISPD-------LSTYNCVVNALCKARAMDKAEA 272

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +LR+MV KG+ PD+ TY SLI G +S  +  E+
Sbjct: 273 ILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEA 305


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 171/344 (49%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD   Y + + G+CKEG LE A+ +L +M   GL P  V YNT++ G C+   
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM ++       T+N+L+        +    ++L++M   G +PD ITY  
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G   +A  L   M   G +P  ++YT ++  L    R ++A++L    + +G
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V FN LI+  C  G +E+A  LLK+M      PD ++Y+T++ G  + GK EEA 
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
            LL+ M  +GI P+ I ++                               + YNA+I  L
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK  E D A +    MVS G  P+++TY  LI+G+AS   A E+
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 137/256 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  TY + ++G CKEG ++EA  +L+ M   G  P  V+Y  ++ G C+ G 
Sbjct: 382 MLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M++QG  P   T+N LI+ L  +  + +A ++LK+M   G  PD I+Y+ 
Sbjct: 442 WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 501

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L + M++KGI P  + Y+S+   LS++ R+ +  Q+F+N     
Sbjct: 502 VIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT 561

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V++NA+I   C     +RA      M      P+E TY  L+ G   +G  +EA+
Sbjct: 562 IRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQ 621

Query: 241 RLLDQMKRRGIKPDHI 256
            LL ++  RG    H+
Sbjct: 622 ELLSELCSRGALRKHL 637



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++YT+   V G+C  GR+ +A  +L++M   G  P    Y+ +++  C  G    + 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              + M  +G        NL+++ +  +  + EA  +L+++   G   D ++YN ++ G 
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C          L DEM+     P ++T+ +LI  L +        ++       G  PDI
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            M+  +IDG C  G++E A  +L  M    + P+ V YNT++ G C   + +EA  LL +
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M ++    D +       T+N L+   C+N   D   ELL +M+S G  PD  TY ++I 
Sbjct: 347 MFQKDCPLDDV-------TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 306 GIA 308
           G  
Sbjct: 400 GFC 402



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 142/294 (48%), Gaps = 10/294 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y + V+G C+ G+L  A R+   +    + P A T+  ++ G C +G +  A    DEM
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             +G  P    Y++++           +  +L+ M  KG   D+   N+++N  C  G  
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A  L  ++   G +  +++Y +++  L    R  + ++L +  +     P+IV FN L
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTL 257

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I   C NG  ER   +L +M      PD   Y T++ G C++G +E A  +L++M   G+
Sbjct: 258 IGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           KP+ +        YN +++GLC  +    AEELL EM  K    DD T+  L++
Sbjct: 318 KPNVVC-------YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 45/228 (19%)

Query: 116 ITYNILINGYCRCGNA--------------------------------KKAFSLHDEMIH 143
           + YN ++ GYCR G                                    A  + DEM  
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSF 139

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           KG  P    Y  ++    +      + ++ E   AKG   D    N +++  C  G ++ 
Sbjct: 140 KGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDE 199

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRC---RQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           A  LL+++       D V+YN ++ G C   R G VEE   L+D+M R       +   P
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEE---LMDEMVR-------VDCAP 249

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             +T+N LI  LC+N   +   E+L +M   G TPD   Y ++I+GI 
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGIC 297


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 171/344 (49%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD   Y + + G+CKEG LE A+ +L +M   GL P  V YNT++ G C+   
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAER 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM ++       T+N+L+        +    ++L++M   G +PD ITY  
Sbjct: 337 WKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTT 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G   +A  L   M   G +P  ++YT ++  L    R ++A++L    + +G
Sbjct: 397 VINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V FN LI+  C  G +E+A  LLK+M      PD ++Y+T++ G  + GK EEA 
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 516

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
            LL+ M  +GI P+ I ++                               + YNA+I  L
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK  E D A +    MVS G  P+++TY  LI+G+AS   A E+
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 137/256 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD  TY + ++G CKEG ++EA  +L+ M   G  P  V+Y  ++ G C+ G 
Sbjct: 382 MLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR 441

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M++QG  P   T+N LI+ L  +  + +A ++LK+M   G  PD I+Y+ 
Sbjct: 442 WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 501

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L + M++KGI P  + Y+S+   LS++ R+ +  Q+F+N     
Sbjct: 502 VIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT 561

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V++NA+I   C     +RA      M      P+E TY  L+ G   +G  +EA+
Sbjct: 562 IRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQ 621

Query: 241 RLLDQMKRRGIKPDHI 256
            LL ++  RG    H+
Sbjct: 622 ELLSELCSRGALRKHL 637



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 144/303 (47%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++YT+   V G+C  GR+ +A  +L++M   G  P    Y+ +++  C  G    + 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              + M  +G        NL+++ +  +  + EA  +L+++   G   D ++YN ++ G 
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C          L DEM+     P ++T+ +LI  L +        ++       G  PDI
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            M+  +IDG C  G++E A  +L  M    + P+ V YNT++ G C   + +EA  LL +
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M ++    D +       T+N L+   C+N   D   ELL +M+S G  PD  TY ++I 
Sbjct: 347 MFQKDCPLDDV-------TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVIN 399

Query: 306 GIA 308
           G  
Sbjct: 400 GFC 402



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 142/294 (48%), Gaps = 10/294 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y + V+G C+ G+L  A R+   +    + P A T+  ++ G C +G +  A    DEM
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAVP---VPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             +G  P    Y++++           +  +L+ M  KG   D+   N+++N  C  G  
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A  L  ++   G +  +++Y +++  L    R  + ++L +  +     P+IV FN L
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTL 257

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I   C NG  ER   +L +M      PD   Y T++ G C++G +E A  +L++M   G+
Sbjct: 258 IGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGL 317

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           KP+ +        YN +++GLC  +    AEELL EM  K    DD T+  L++
Sbjct: 318 KPNVVC-------YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 45/228 (19%)

Query: 116 ITYNILINGYCRCGNA--------------------------------KKAFSLHDEMIH 143
           + YN ++ GYCR G                                    A  + DEM  
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSF 139

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
           KG  P    Y  ++    +      + ++ E   AKG   D    N +++  C  G ++ 
Sbjct: 140 KGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDE 199

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRC---RQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           A  LL+++       D V+YN ++ G C   R G VEE   L+D+M R       +   P
Sbjct: 200 AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEE---LMDEMVR-------VDCAP 249

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             +T+N LI  LC+N   +   E+L +M   G TPD   Y ++I+GI 
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGIC 297


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 162/308 (52%), Gaps = 7/308 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D Y+    V G+C EGR+EE   ++E     G VP AV YN LIDGYC +G++       
Sbjct: 80  DDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLL 139

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM  +GI+PT  TY  +IH L  +  + + + +L EM  +G+ P+   YN +IN  C+C
Sbjct: 140 GEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKC 199

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            +A +A  + ++M+     P ++T+ ++I    ++  + EA +L    + +G+ P+ + +
Sbjct: 200 RSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSY 259

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             LI G C  G    A  LL EM      PD +T   L+HG    G+V +A  + ++M  
Sbjct: 260 TPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAE 319

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           R + PD          YN LI GLCK +    A+ LL EM+ + + PD   Y +LI+G  
Sbjct: 320 RQVMPDAN-------IYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFV 372

Query: 309 SVDKAAES 316
             DK +++
Sbjct: 373 RSDKLSDA 380



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 175/318 (55%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR   PD  T+ + ++G C+EG + EA ++L +    GL P  ++Y  LI G+C +G 
Sbjct: 213 VKSR-FNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGE 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A     EM+ +G  P   T   LIH L++  ++ +A  + ++M E+ ++PD+  YN+
Sbjct: 272 AMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNV 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+      A +L +EM+ + +QP    YT+LI    + +++ +A ++FE F+ + 
Sbjct: 332 LISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFE-FMEEK 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N +I G+C  G ++ A + +  M +    PDE TY TL+ G  ++G +  + 
Sbjct: 391 ACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASL 450

Query: 241 RLL-DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           RLL D MKRR          P   TY +LI G C   +   AE+L  +M S+G+ P+   
Sbjct: 451 RLLCDMMKRR--------CKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVH 502

Query: 300 YFSLIEGIASVDKAAESS 317
           Y  LI  +   DK  +++
Sbjct: 503 YTVLIGSLFKKDKVIQAA 520



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 153/334 (45%), Gaps = 23/334 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD+  Y   +SG+CK+  L  A  +LE+M E  + P    Y TLIDG+     
Sbjct: 317 MAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDK 376

Query: 61  LEMA---FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           L  A   F F +E       P    YN++I        M EA   +  M + G +PD  T
Sbjct: 377 LSDARKIFEFMEEKA----CPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFT 432

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  L++GY + G+   +  L  +M+ +  +P + TY SLI           A+ LF    
Sbjct: 433 YTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQ 492

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG--RCRQGK 235
           ++G+ P++V +  LI        + +A +  + M      P++ T + L++G   CR G 
Sbjct: 493 SEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGM 552

Query: 236 VEEARR----------LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           V   R           LLD    RG+  D    +P    YNA+I  LC++     A +L 
Sbjct: 553 VNSNRSDTKQAHEKSALLDVF--RGLISD--GLDPRISAYNAIIFSLCRHNMLGKAMDLK 608

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
            +M +KG  PD  T+ SL+ G +S  ++ +  ++
Sbjct: 609 DKMSNKGCLPDPITFLSLLYGFSSAGESGKWRSA 642



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 152/299 (50%), Gaps = 30/299 (10%)

Query: 39  NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMV 97
           +G +P A   N L+     +   E A     EM V++G     ST  +++  L +E ++ 
Sbjct: 40  HGALPDAPDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTC-VMVRGLCLEGRVE 98

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           E   +++    +G VP ++ YN+LI+GYCR G+  +   L  EM  KGI PT++TY ++I
Sbjct: 99  EGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAII 158

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L ++  + + + L     A+G+ P++ ++N +I+  C   +  +A  +L +M + + +
Sbjct: 159 HWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFN 218

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT---------------- 261
           PD VT+NT++ G CR+G V EA +LL +  RRG++P+ +S+ P                 
Sbjct: 219 PDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDL 278

Query: 262 ------------RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                        +T  ALI GL  + + + A  +  +M  + + PD N Y  LI G+ 
Sbjct: 279 LVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLC 337



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 51/293 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + VQPD + Y + + G  +  +L +A ++ E M+E    P  V YN +I GYC  G 
Sbjct: 352 MLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKA-CPDIVAYNVMIKGYCKFGM 410

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    M K G +P   TY  L+     +  +  +  +L +M ++   P+  TY  
Sbjct: 411 MKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYAS 470

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL--- 177
           LI GYC  G+   A  L  +M  +G+ P ++ YT LI  L K++++I+A   FE+ L   
Sbjct: 471 LICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNH 530

Query: 178 -----------------------------------------------AKGMLPDIVMFNA 190
                                                          + G+ P I  +NA
Sbjct: 531 CPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNA 590

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +I   C +  + +A  L  +M      PD +T+ +L++G    G+  + R  L
Sbjct: 591 IIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGESGKWRSAL 643



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 36/241 (14%)

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV--LSKQNRMI 167
           G +PD+   N L+         ++A  L+ EM+ +  +     Y++ + V  L  + R+ 
Sbjct: 41  GALPDAPDCNCLLRLLVERRRWERARGLYGEMLVR--EGGADDYSTCVMVRGLCLEGRVE 98

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           E   L E    +G +P  V +N LIDG+C  G+I R   LL EM+   + P  VTY  ++
Sbjct: 99  EGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAII 158

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPD----------------------------HISFN 259
           H   R+G + +   LL +M+ RG+ P+                               FN
Sbjct: 159 HWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFN 218

Query: 260 PTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           P  +T+N +I G C+  EGD+ E  +LLRE + +G+ P+  +Y  LI G     +A  +S
Sbjct: 219 PDVVTFNTMIAGFCR--EGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVAS 276

Query: 318 N 318
           +
Sbjct: 277 D 277



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 102/273 (37%), Gaps = 53/273 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY + V G  K+G +  + R+L  M +    P   TY +LI GYCN G+
Sbjct: 421 MRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGD 480

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-------------------- 100
              A     +M  +G+ P    Y +LI  L  + K+++A                     
Sbjct: 481 TYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHY 540

Query: 101 ------------------------------DMLKEMGEKGIVPDSITYNILINGYCRCGN 130
                                         D+ + +   G+ P    YN +I   CR   
Sbjct: 541 LVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRHNM 600

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KA  L D+M +KG  P  +T+ SL++  S      +      N   +     I  + A
Sbjct: 601 LGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGESGKWRSALPNEFQQDEFEIITKYMA 660

Query: 191 LIDGHCTN---GNIERAFSLLKEMDRMKVHPDE 220
           L + H T+   G + R   L  E  +    P++
Sbjct: 661 LFNQHVTSSVVGEVSRILQLYSEEFQFLKQPEQ 693


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 171/362 (47%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC---- 56
           M + G  P    + S +   C+ G    A ++L++M + G  P  V YN LI G C    
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 57  ------------------------NK-------------GNLEMAFSFRDEMVKQGIMPT 79
                                   NK             G  E A+S   EM+ +G +P 
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            STY+ +I  L    K+  A  + +EM    +VPD  TY ILI+ +C+ G  ++A    D
Sbjct: 480 TSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFD 539

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM+  G  P ++TYT+LI    K  +M  A++LFE  L++G +P++V + ALIDGHC +G
Sbjct: 540 EMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSG 599

Query: 200 NIERAFSLLKEM----------------DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            IE+A  +   M                D     P+  TY  L+ G C+  KV+EAR LL
Sbjct: 600 QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL 659

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M   G +P+HI        Y+ALI G CK  + D A+ +  +M  +G  P+  TY SL
Sbjct: 660 DVMSVEGCEPNHI-------VYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 304 IE 305
           I+
Sbjct: 713 ID 714



 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 171/355 (48%), Gaps = 58/355 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD+ TY   +  +C   +++ A  + E+MK N +VP   TY  LID +C  G 
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A  + DEMV+ G  P   TY  LIH  L  RKM  A+++ + M  +G +P+ +TY  
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 121 LINGYCRCGNAKKAFSLHDEM--------------IHKG--IQPTMLTYTSLIFVLSKQN 164
           LI+G+C+ G  +KA  ++  M              I  G    P + TY +L+  L K +
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN------------------------ 200
           ++ EA  L +    +G  P+ ++++ALIDG C  G                         
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 201 --IERAFS------LLKEMDRM---KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
             I+R F        LK + RM      P+ + Y  ++ G C+ GK +EA RL+  M+ +
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           G  P+ +       TY A+I G  K  + D   EL+R+M +KG  P+  TY  LI
Sbjct: 771 GCHPNVV-------TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLI 818



 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+  Y   +SG+C+    EEA   L +M+ +  +P  VTY  L+ G   K  L       
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRIL 357

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M+ +G  P+   +N LIH          A  +LK+MG+ G  P  + YNILI G   C
Sbjct: 358 SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI--C 415

Query: 129 GNAK--------KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           GN K         A   + EM+   +    +  ++L   L    +  +A  +    ++KG
Sbjct: 416 GNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKG 475

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD   ++ +I   C    ++ AF L +EM    V PD  TY  L+   C+ G +++AR
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQAR 535

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +  D+M R G  P+ +       TY ALI    K ++   A EL   M+S+G  P+  TY
Sbjct: 536 KWFDEMVRDGCAPNVV-------TYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 589 TALIDG 594



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 154/313 (49%), Gaps = 14/313 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+ +TYG+ V G+CK  +++EA  +L+ M   G  P  + Y+ LIDG+C  G L+ A   
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M ++G  P   TY+ LI  L  ++++  A  +L  M E    P+ I Y  +I+G C+
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A+ L   M  KG  P ++TYT++I    K  ++ +  +L     AKG  P+ V 
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI+  C  G ++ A  LL EM +         Y  ++ G  R+  +     LLD++ 
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG--LLDEI- 870

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS--KGITPDDNTYFSLIE 305
                 ++++  P    Y  LI   CK    +LA EL + M S       D + Y SLIE
Sbjct: 871 -----AENVAV-PIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIE 924

Query: 306 GI---ASVDKAAE 315
            +   + VDKA E
Sbjct: 925 SLSLASKVDKAFE 937



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 4/256 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+ YTY S +  + K+ RL+ A ++L +M EN   P  + Y  +IDG C  G 
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+     M ++G  P   TY  +I       K+ +  +++++MG KG  P+ +TY +
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G    A  L DEM        M  Y  +I   +++   I +  L +      
Sbjct: 817 LINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNRE--FIISLGLLDEIAENV 874

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH--PDEVTYNTLMHGRCRQGKVEE 238
            +P I  +  LID  C  G +E A  L K M     +   D+  Y++L+       KV++
Sbjct: 875 AVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDK 934

Query: 239 ARRLLDQMKRRGIKPD 254
           A  L   M +RG  P+
Sbjct: 935 AFELYADMIKRGGIPE 950



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G    A   L ++K+ G  P+ +TYN L+  +     L+ A+    EM   G     
Sbjct: 208 CRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDG 267

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            T    +H L    +  EA  ++++   K    D++ Y  +I+G C     ++A      
Sbjct: 268 YTLGCFVHLLCKAGRWREALALIEKEEFK---LDTVIYTQMISGLCEASLFEEAMDFLSR 324

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M      P ++TY  L+    ++ ++    ++    + +G  P   +FN+LI  +C +G+
Sbjct: 325 MRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFN 259
              A+ LLK+M      P  V YN L+ G C   K+     L    K  G   D H+  N
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
             ++  + L + LC   + + A  ++REM+SKG  PD +TY  +I  + +  K 
Sbjct: 445 --KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 39/231 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+   Y   + G+CK G+ +EA R++  M+E G  P  VTY  +IDG+   G 
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------HELLME-------------RK 95
           ++       +M  +G  P   TY +LI            H+LL E             RK
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 96  MVEADD--------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI----H 143
           ++E  +        +L E+ E   VP    Y ILI+ +C+ G  + A  LH  M     +
Sbjct: 852 VIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSY 911

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
                 +  Y+SLI  LS  +++ +A +L+ + + +G +P++ +F  L+ G
Sbjct: 912 SAADKDL--YSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKG 960



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 111/276 (40%), Gaps = 10/276 (3%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           ++ G   T   Y+ L++     GN  +   F  E+  +         N+LI +       
Sbjct: 154 RQIGYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLW 213

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
             A + L  + + G  P  +TYN L+  +        A+ +H EM   G      T    
Sbjct: 214 NVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           + +L K  R  EA  L E    +    D V++  +I G C     E A   L  M     
Sbjct: 274 VHLLCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSC 330

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P+ VTY  L+ G  R+ ++   +R+L  M   G         P+R  +N+LI   C++ 
Sbjct: 331 IPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCY-------PSRRIFNSLIHAYCRSG 383

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           +   A +LL++M   G  P    Y  LI GI   +K
Sbjct: 384 DYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+   ++ +C EG  E++S ++++M+++G  PT VTYNT++  YC KG 
Sbjct: 224 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M  +G+     TYN+LIH+L    ++ +   +L++M ++ I P+ +TYN 
Sbjct: 284 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+   G    A  L +EM+  G+ P  +T+ +LI     +    EA ++F    AKG
Sbjct: 344 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  L+DG C N   + A      M R  V    +TY  ++ G C+ G ++EA 
Sbjct: 404 LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAV 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M + GI PD +       TY+ALI G CK      A+E++  +   G++P+   Y
Sbjct: 464 VLLNEMSKDGIDPDIV-------TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 516

Query: 301 FSLI 304
            +LI
Sbjct: 517 STLI 520



 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P  YT  + +  + K G        L++M +  + P   T+N LI+  C +G+ E +
Sbjct: 193 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 252

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M K G  PT  TYN ++H    + +   A ++L  M  KG+  D  TYN+LI+ 
Sbjct: 253 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 312

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     K + L  +M  + I P  +TY +LI   S + +++ A QL    L+ G+ P+
Sbjct: 313 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPN 372

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V FNALIDGH + GN + A  +   M+   + P EV+Y  L+ G C+  + + AR    
Sbjct: 373 HVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYM 432

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +MKR G+          R+TY  +I GLCKN   D A  LL EM   GI PD  TY +LI
Sbjct: 433 RMKRNGVCVG-------RITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI 485

Query: 305 EGIASVDK 312
            G   V +
Sbjct: 486 NGFCKVGR 493



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 6/318 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY + ++G CK GR + A  ++ ++   GL P  + Y+TLI   C  G 
Sbjct: 469 MSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 528

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M+ +G      T+N+L+  L    K+ EA++ ++ M   GI+P++++++ 
Sbjct: 529 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 588

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY   G   KAFS+ DEM   G  PT  TY SL+  L K   + EA++  ++  A  
Sbjct: 589 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVP 648

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D VM+N L+   C +GN+ +A SL  EM +  + PD  TY +L+ G CR+GK   A 
Sbjct: 649 AAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI 708

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               + + RG      +  P ++ Y   + G+ K  +         +M + G TPD  T 
Sbjct: 709 LFAKEAEARG------NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTT 762

Query: 301 FSLIEGIASVDKAAESSN 318
            ++I+G + + K  ++++
Sbjct: 763 NAMIDGYSRMGKIEKTND 780



 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G+ P   +YG  + G+CK    + A     +MK NG+    +TY  +IDG C  G 
Sbjct: 399 MEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGF 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM K GI P   TY+ LI+      +   A +++  +   G+ P+ I Y+ 
Sbjct: 459 LDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYST 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   CR G  K+A  +++ MI +G      T+  L+  L K  ++ EA++      + G
Sbjct: 519 LIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 578

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V F+ LI+G+  +G   +AFS+  EM ++  HP   TY +L+ G C+ G + EA 
Sbjct: 579 ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAE 638

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + L  +       D +        YN L+  +CK+     A  L  EMV + I PD  TY
Sbjct: 639 KFLKSLHAVPAAVDTV-------MYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 691

Query: 301 FSLIEGIA 308
            SLI G+ 
Sbjct: 692 TSLISGLC 699



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+GV  D  TY   +  +C+  R+ +   +L  M++  + P  VTYNTLI+G+ N+G 
Sbjct: 294 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 353

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    +EM+  G+ P   T+N LI   + E    EA  M   M  KG+ P  ++Y +
Sbjct: 354 VLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 413

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+      A   +  M   G+    +TYT +I  L K   + EA  L       G
Sbjct: 414 LLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDG 473

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++ALI+G C  G  + A  ++  + R+ + P+ + Y+TL++  CR G ++EA 
Sbjct: 474 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 533

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ + M   G   DH        T+N L+  LCK  +   AEE +R M S GI P+  ++
Sbjct: 534 RIYEAMILEGHTRDH-------FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 586

Query: 301 FSLIEG 306
             LI G
Sbjct: 587 DCLING 592



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           M  R + PDSYTY S +SG+C++G+   A    ++ +  G ++P  V Y   +DG    G
Sbjct: 679 MVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAG 738

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +    FR++M   G  P   T N +I       K+ + +D+L EMG +   P+  TYN
Sbjct: 739 QWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYN 798

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL++GY +  +   +F L+  +I  GI P  LT  SL+  + + N +    ++ + F+ +
Sbjct: 799 ILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICR 858

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D   FN LI   C NG I  AF L+K M  + +  D+ T + ++    R  + +E+
Sbjct: 859 GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 918

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R +L +M ++GI P+          Y  LI GLC+  +   A  +  EM++  I P +  
Sbjct: 919 RMVLHEMSKQGISPE-------SRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVA 971

Query: 300 YFSLIEGIASVDKAAESS 317
             +++  +A   KA E++
Sbjct: 972 ESAMVRALAKCGKADEAT 989



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 8/290 (2%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G+ PD  T  S V G+C+   LE   ++L+     G+     T+N LI   C  G +  A
Sbjct: 824  GILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWA 883

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            F     M   GI     T + ++  L    +  E+  +L EM ++GI P+S  Y  LING
Sbjct: 884  FDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLING 943

Query: 125  YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             CR G+ K AF + +EMI   I P  +  ++++  L+K  +  EA  L    L   ++P 
Sbjct: 944  LCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPT 1003

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            I  F  L+   C NGN+  A  L   M    +  D V+YN L+ G C +G +  A  L +
Sbjct: 1004 IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYE 1063

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG-DLAEELLREMVSKGI 293
            +MK  G       F     TY ALI+GL   +     A+ +L++++++G 
Sbjct: 1064 EMKGDG-------FLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1106



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 161/388 (41%), Gaps = 78/388 (20%)

Query: 2    KSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            ++RG V P+   Y  FV GM K G+ +      EQM   G  P  VT N +IDGY   G 
Sbjct: 715  EARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGK 774

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIH----------ELLMERKMV------------- 97
            +E       EM  Q   P  +TYN+L+H            L+ R ++             
Sbjct: 775  IEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHS 834

Query: 98   ------EAD------DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E++       +LK    +G+  D  T+N+LI+  C  G    AF L   M   G
Sbjct: 835  LVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 894

Query: 146  IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            I     T  +++ VL++ +R  E+  +      +G+ P+   +  LI+G C  G+I+ AF
Sbjct: 895  ISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAF 954

Query: 206  S-----------------------------------LLKEMDRMKVHPDEVTYNTLMHGR 230
                                                LL+ M +MK+ P   ++ TLMH  
Sbjct: 955  VVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLC 1014

Query: 231  CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
            C+ G V EA  L   M   G+K D +S       YN LI GLC   +  LA EL  EM  
Sbjct: 1015 CKNGNVIEALELRVVMSNCGLKLDLVS-------YNVLITGLCAKGDMALAFELYEEMKG 1067

Query: 291  KGITPDDNTYFSLIEGIASVDKAAESSN 318
             G   +  TY +LI G+ + + A   ++
Sbjct: 1068 DGFLANATTYKALIRGLLARETAFSGAD 1095



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S Y++LI   L E  + ++ ++ + MG  G  P   T N ++    + G     +S   E
Sbjct: 164 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 223

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+ + I P + T+  LI VL  +    ++  L +     G  P IV +N ++  +C  G 
Sbjct: 224 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 283

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            + A  LL  M    V  D  TYN L+H  CR  ++ +   LL  M++R I P+ +    
Sbjct: 284 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---- 339

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              TYN LI G     +  +A +LL EM+S G++P+  T+ +LI+G
Sbjct: 340 ---TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDG 382



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 130/275 (47%), Gaps = 26/275 (9%)

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLI---HELLMERKMVEADDMLKEM----GEKGIVPD 114
           ++A  F   +VKQ  + T     L+    H L+  R    A  +LKE+    G+   V  
Sbjct: 91  KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFG 150

Query: 115 SI------------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           ++             Y+ILI  Y R G  + +  +   M   G  P++ T  +++  + K
Sbjct: 151 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 210

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
               +      +  L + + PD+  FN LI+  C  G+ E++  L+++M++    P  VT
Sbjct: 211 SGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVT 270

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           YNT++H  C++G+ + A  LLD MK +G+  D         TYN LI  LC++       
Sbjct: 271 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDAD-------VCTYNMLIHDLCRSNRIAKGY 323

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            LLR+M  + I P++ TY +LI G ++  K   +S
Sbjct: 324 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIAS 358



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S G+  D  T  + VS + +  R +E+  +L +M + G+ P +  Y  LI+G C  G+
Sbjct: 890  MTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGD 949

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ AF  ++EM+   I P     + ++  L    K  EA  +L+ M +  +VP   ++  
Sbjct: 950  IKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTT 1009

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++  C+ GN  +A  L   M + G++  +++Y  LI  L  +  M  A +L+E     G
Sbjct: 1010 LMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG 1069

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFS 206
             L +   + ALI G       E AFS
Sbjct: 1070 FLANATTYKALIRGLLAR---ETAFS 1092


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TYG+ + G+C    ++ A  +L +M E+G+ P  V Y+ L+ GYC  G 
Sbjct: 120 MQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGR 179

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E      +EM  +GI P    Y  LI  L    K+ +A  ++  M E+G+ P+ +TYN+
Sbjct: 180 WESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNV 239

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-- 178
           LIN  C+ G+ ++A  L   M  KG+QP ++TY +LI  LS    M EA  L E  +   
Sbjct: 240 LINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGE 299

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
             + PD++ FN++I G C  G + +A  +   M       + V +N L+ G  R  KV++
Sbjct: 300 TRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKK 359

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L+D+M   G++PD  SF     TY+ LI G CK ++ + AE  L EM  +G+ P+  
Sbjct: 360 AMELMDEMASSGLQPD--SF-----TYSILINGFCKMRQVERAESYLSEMRHQGMEPEPV 412

Query: 299 TYFSLIEGI 307
            Y  L++ +
Sbjct: 413 HYIPLLKAM 421



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 164/302 (54%), Gaps = 9/302 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P++ +Y + +  +C + R  +A  +L  M++ G+ P  VTY TLI G C+  +++ A  
Sbjct: 91  RPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVE 150

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +EM + GI P    Y+ L+H      +      + +EM  +GI PD + Y  LI+  C
Sbjct: 151 LLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLC 210

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G  KKA  + D M  +G++P ++TY  LI  + K+  + EA  L +N   KG+ PD+V
Sbjct: 211 RHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVV 270

Query: 187 MFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +N LI G  +   ++ A +LL+EM     +V PD +T+N+++HG C+ G + +A ++  
Sbjct: 271 TYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRA 330

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M   G + + ++F       N LI GL +  +   A EL+ EM S G+ PD  TY  LI
Sbjct: 331 MMAENGCRCNLVAF-------NLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILI 383

Query: 305 EG 306
            G
Sbjct: 384 NG 385



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 158/312 (50%), Gaps = 24/312 (7%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGL------------VPTAVTYNTLIDGYCNKGNLEM 63
           +++ + + GR E A+R+   ++   L            V  AV+YNT++   C +G L+ 
Sbjct: 15  YLAVLLRRGRGEAAARLNRHLRLLPLPESPALLSALPSVRDAVSYNTVLAALCRQGCLDA 74

Query: 64  AFSFRDEMVKQGIM---PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           A      M  +  +   P A +Y  L+  L  +R+  +A  +L+ M + G+ PD +TY  
Sbjct: 75  ALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGT 134

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C   +   A  L +EM   GI+P ++ Y+ L+    K  R     ++FE    +G
Sbjct: 135 LIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRG 194

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+VM+ ALID  C +G +++A  ++  M    + P+ VTYN L++  C++G V EA 
Sbjct: 195 IEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREAL 254

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS--KGITPDDN 298
            L   M  +G++PD +       TYN LI GL    E D A  LL EM+     + PD  
Sbjct: 255 DLRKNMSEKGVQPDVV-------TYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLM 307

Query: 299 TYFSLIEGIASV 310
           T+ S+I G+  +
Sbjct: 308 TFNSVIHGLCKI 319



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 158/311 (50%), Gaps = 10/311 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M  +GVQPD  TY + ++G+     ++EA  +LE+M   E  + P  +T+N++I G C  
Sbjct: 260 MSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKI 319

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +  A   R  M + G       +NLLI  LL   K+ +A +++ EM   G+ PDS TY
Sbjct: 320 GWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTY 379

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +ILING+C+    ++A S   EM H+G++P  + Y  L+  +  Q  M +A  LF N + 
Sbjct: 380 SILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLF-NEMD 438

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +    D   ++ +I G   +G  + A   LK+M    + PD VTY+  ++   + G +  
Sbjct: 439 RNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAA 498

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A R+L QM   G  PD   F       ++LIQG     + +   EL REM +K +  D  
Sbjct: 499 AERVLKQMTASGFVPDVAVF-------DSLIQGYGAKGDTEKILELTREMTAKDVALDPK 551

Query: 299 TYFSLIEGIAS 309
              +++  + +
Sbjct: 552 IISTIVTSLGA 562



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           D V+YNT++   CRQG ++ A  LL  M         ++  P  ++Y  L++ LC ++  
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHE----PRLASRPNAISYTTLMRALCADRRA 110

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAESSN 318
             A  LLR M   G+ PD  TY +LI G+   A VD A E  N
Sbjct: 111 AQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLN 153


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 172/370 (46%), Gaps = 64/370 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+ PD+ TY S + G  K GRL++     E+MK     P  +TYNTLI+ +C  G 
Sbjct: 159 MKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGK 218

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L     F  EM + G+ P   +Y+ L+     E  M +A     +M   G+VP+  TY  
Sbjct: 219 LPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTS 278

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ YC+ GN   AF L DEM   G++  ++TYT+LI  L    R+ EA++LF   +  G
Sbjct: 279 LVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAG 338

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++  + ALI G     N++RA  LL EM    + PD + Y T +   C   K+E A+
Sbjct: 339 VIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAK 398

Query: 241 RLLDQMKRRGIKPDHISF-----------NP-----------------TRLTYNALIQGL 272
            ++++M+ +GIK +   +           NP                 T +T+  LI GL
Sbjct: 399 VVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGL 458

Query: 273 CKNQ------------------------------------EGDLAEELLREMVSKGITPD 296
           CKN+                                    + + A  L  +M  KG+ PD
Sbjct: 459 CKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPD 518

Query: 297 DNTYFSLIEG 306
              Y SLI+G
Sbjct: 519 RTAYTSLIDG 528



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 160/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P  +TY   +  MCKEG +E AS + E+MK  GL+P  VTYN++IDGY   G 
Sbjct: 124 MIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGR 183

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+    F +EM      P   TYN LI+      K+ +  +  +EM + G+ P+ ++Y+ 
Sbjct: 184 LDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYST 243

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+    ++A   + +M   G+ P   TYTSL+    K   + +A +L +     G
Sbjct: 244 LVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVG 303

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  ++V + ALIDG C    I+ A  L  +M    V P+  +Y  L+HG  +   ++ A 
Sbjct: 304 VEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRAL 363

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD+MK RGIKPD        L Y   I  LC  ++ + A+ ++ EM  KGI  +   Y
Sbjct: 364 ELLDEMKGRGIKPD-------LLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIY 416

Query: 301 FSLIEG 306
            +L++ 
Sbjct: 417 TTLMDA 422



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 156/312 (50%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V P + +    +    + G+ +   R  + M   G  PT  TYN +ID  C +G+
Sbjct: 89  MKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGD 148

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM  +G++P   TYN +I       ++ +     +EM      PD ITYN 
Sbjct: 149 IEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNT 208

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C+ G   K      EM   G++P +++Y++L+    K++ M +A + + +    G
Sbjct: 209 LINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLG 268

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+   + +L+D +C  GN+  AF L  EM ++ V  + VTY  L+ G C   +++EA 
Sbjct: 269 LVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAE 328

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G+ P+  S       Y ALI G  K +  D A ELL EM  +GI PD   Y
Sbjct: 329 ELFGKMVTAGVIPNLAS-------YTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLY 381

Query: 301 FSLIEGIASVDK 312
            + I  +  ++K
Sbjct: 382 GTFIWSLCGLEK 393



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 159/311 (51%), Gaps = 10/311 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    + +  S + +E   EEA +   +MK   + P   + N L+  +   G  +    F
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+  G  PT  TYN++I  +  E  +  A  + +EM  +G++PD++TYN +I+GY +
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G         +EM     +P ++TY +LI    K  ++ +  + F      G+ P++V 
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVS 240

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ L+D  C    +++A     +M R+ + P+E TY +L+   C+ G + +A RL D+M 
Sbjct: 241 YSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMS 300

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G++ + +       TY ALI GLC  +    AEEL  +MV+ G+ P+  +Y +LI G 
Sbjct: 301 QVGVEWNVV-------TYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGF 353

Query: 308 A---SVDKAAE 315
               ++D+A E
Sbjct: 354 VKAKNMDRALE 364



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 132/288 (45%), Gaps = 36/288 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+ +TY S V   CK G L +A R+ ++M + G+    VTY  LIDG C+   
Sbjct: 264 MRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVER 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +MV  G++P  ++Y  LIH  +  + M  A ++L EM  +GI PD + Y  
Sbjct: 324 IKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGT 383

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR--------------- 165
            I   C     + A  + +EM  KGI+     YT+L+    K                  
Sbjct: 384 FIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELD 443

Query: 166 --------MIEADQLFENFLAK-------------GMLPDIVMFNALIDGHCTNGNIERA 204
                    +  D L +N L               G+  +  ++ A+IDG C    +E A
Sbjct: 444 IEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAA 503

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
            +L ++M +  + PD   Y +L+ G+ +QG V +A  L D+M   G++
Sbjct: 504 TTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVE 551



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +P    ++ L   L+ E    EA     +M    + P + + N L++ + R G       
Sbjct: 60  VPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKR 119

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
              +MI  G +PT+ TY  +I  + K+  +  A  LFE    +G++PD V +N++IDG+ 
Sbjct: 120 FFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G ++      +EM  M   PD +TYNTL++  C+ GK+ +      +MK+ G+KP+ +
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVV 239

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           S       Y+ L+   CK      A +   +M   G+ P+++TY SL++    +   +++
Sbjct: 240 S-------YSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDA 292



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 54/92 (58%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+Q ++  Y + + G+CKE ++E A+ + EQM + GLVP    Y +LIDG   +GN+  A
Sbjct: 479 GLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQA 538

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
            + RD+M + G+   A   +L  + + +  +M
Sbjct: 539 LALRDKMAEIGVESGARFGDLCQNTIKLSLRM 570


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 160/299 (53%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S   +P+  TY + +SG C++ ++  A  +L +MKE GL P   TY TLIDG+C  GN
Sbjct: 334 VRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGN 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A+   + M ++G  P   TYN ++  L  + ++ EA  +LK     G+  D +TY I
Sbjct: 394 FERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTI 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+    K+A  L ++M+  GIQP + +YT+LI V  ++ RM E++  FE  +  G
Sbjct: 454 LISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + ++I G+C  GN+  A      M       D +TY  L+ G C+Q K++EAR
Sbjct: 514 LVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEAR 573

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L D M  +G+ P  +    TR+T   L    CK  +G  A  +L  +  K      NT
Sbjct: 574 CLYDAMIEKGLTPCEV----TRVT---LAYEYCKIDDGCSAMVVLERLEKKLWVRTVNT 625



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 162/313 (51%), Gaps = 8/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P+   +   + G+CK G +++A  MLE+M   G  P   T+  LIDG C KG  E A
Sbjct: 267 GLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKA 326

Query: 65  FSFRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           F    ++V+ +   P   TY  +I     + KM  A+ +L  M E+G+ P++ TY  LI+
Sbjct: 327 FRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLID 386

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+ GN ++A+ L + M  +G  P + TY +++  L K+ R+ EA ++ ++    G+  
Sbjct: 387 GHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDA 446

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +  LI  HC    I++A  L  +M +  + PD  +Y TL+   CR+ +++E+    
Sbjct: 447 DKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFF 506

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++  R G+ P       T  TY ++I G C+     LA +    M   G   D  TY +L
Sbjct: 507 EEAVRFGLVP-------TNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGAL 559

Query: 304 IEGIASVDKAAES 316
           I G+    K  E+
Sbjct: 560 ISGLCKQSKLDEA 572



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 167/352 (47%), Gaps = 43/352 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P + T    V  + + G +E A  + ++M   G+ P  V+Y  ++ GYC  GN
Sbjct: 158 MHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGN 217

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  +  +   M+++G +   +T +L++ E   +  +  A    +   E G+ P+ I +  
Sbjct: 218 VLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTC 277

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN---------------- 164
           +I G C+ G+ K+AF + +EM+ +G +P + T+T+LI  L K+                 
Sbjct: 278 MIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSE 337

Query: 165 --------------------RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
                               +M  A+ L      +G+ P+   +  LIDGHC  GN ERA
Sbjct: 338 NHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERA 397

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           + L+  M+     P+  TYN ++ G C++G+V+EA ++L    R G+  D       ++T
Sbjct: 398 YELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDAD-------KVT 450

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           Y  LI   CK  E   A  L  +MV  GI PD ++Y +LI       +  ES
Sbjct: 451 YTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKES 502



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 152/294 (51%), Gaps = 8/294 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           GR++EA  M+ +M   GL P+  T N ++      G +E A +  DEM  +G+ P   +Y
Sbjct: 146 GRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSY 205

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            +++        ++E+D  L  M E+G V D+ T ++++  +C  G   +A         
Sbjct: 206 RVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCE 265

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G++P ++ +T +I  L K+  + +A ++ E  + +G  P++    ALIDG C  G  E+
Sbjct: 266 MGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEK 325

Query: 204 AFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           AF L  ++ R + H P+ +TY  ++ G CR  K+  A  LL +MK +G+ P+        
Sbjct: 326 AFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPN-------T 378

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY  LI G CK    + A EL+  M  +G +P+  TY ++++G+    +  E+
Sbjct: 379 NTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEA 432



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 141/257 (54%), Gaps = 8/257 (3%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE-ADDMLKEMGEK 109
           ++  +   G ++ A     EM  QG+ P+  T N ++ +++ E  +VE A+++  EM  +
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVV-KIVTEMGLVEYAENLFDEMCAR 196

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G+ P+ ++Y +++ GYC+ GN  ++      MI +G      T + ++    ++  +  A
Sbjct: 197 GVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRA 256

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
              F  F   G+ P+++ F  +I+G C  G++++AF +L+EM      P+  T+  L+ G
Sbjct: 257 LWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDG 316

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C++G  E+A RL  ++ R     +H    P  LTY A+I G C++++ + AE LL  M 
Sbjct: 317 LCKKGWTEKAFRLFLKLVR---SENH---KPNVLTYTAMISGYCRDEKMNRAEMLLSRMK 370

Query: 290 SKGITPDDNTYFSLIEG 306
            +G+ P+ NTY +LI+G
Sbjct: 371 EQGLAPNTNTYTTLIDG 387


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 171/362 (47%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC---- 56
           M + G  P    + S +   C+ G    A ++L++M + G  P  V YN LI G C    
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 57  ------------------------NK-------------GNLEMAFSFRDEMVKQGIMPT 79
                                   NK             G  E A+S   EM+ +G +P 
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPD 479

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            STY+ +I  L    K+  A  + +EM    +VPD  TY ILI+ +C+ G  ++A    D
Sbjct: 480 TSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFD 539

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM+  G  P ++TYT+LI    K  +M  A++LFE  L++G +P++V + ALIDGHC +G
Sbjct: 540 EMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSG 599

Query: 200 NIERAFSLLKEM----------------DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            IE+A  +   M                D     P+  TY  L+ G C+  KV+EAR LL
Sbjct: 600 QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLL 659

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M   G +P+HI        Y+ALI G CK  + D A+ +  +M  +G  P+  TY SL
Sbjct: 660 DVMSVEGCEPNHI-------VYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 304 IE 305
           I+
Sbjct: 713 ID 714



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 171/355 (48%), Gaps = 58/355 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD+ TY   +  +C   +++ A  + E+MK N +VP   TY  LID +C  G 
Sbjct: 471 MMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGL 530

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A  + DEMV+ G  P   TY  LIH  L  RKM  A+++ + M  +G +P+ +TY  
Sbjct: 531 LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTA 590

Query: 121 LINGYCRCGNAKKAFSLHDEM--------------IHKG--IQPTMLTYTSLIFVLSKQN 164
           LI+G+C+ G  +KA  ++  M              I  G    P + TY +L+  L K +
Sbjct: 591 LIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAH 650

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN------------------------ 200
           ++ EA  L +    +G  P+ ++++ALIDG C  G                         
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710

Query: 201 --IERAFS------LLKEMDRM---KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
             I+R F        LK + RM      P+ + Y  ++ G C+ GK +EA RL+  M+ +
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           G  P+ +       TY A+I G  K  + D   EL+R+M +KG  P+  TY  LI
Sbjct: 771 GCHPNVV-------TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLI 818



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+  Y   +SG+C+    EEA   L +M+ +  +P  VTY  L+ G   K  L       
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRIL 357

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M+ +G  P+   +N LIH          A  +LK+MG+ G  P  + YNILI G   C
Sbjct: 358 SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI--C 415

Query: 129 GNAK--------KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           GN K         A   + EM+   +    +  ++L   L    +  +A  +    ++KG
Sbjct: 416 GNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKG 475

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD   ++ +I   C    ++ AF L +EM    V PD  TY  L+   C+ G +++AR
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQAR 535

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +  D+M R G  P+ +       TY ALI    K ++   A EL   M+S+G  P+  TY
Sbjct: 536 KWFDEMVRDGCAPNVV-------TYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 301 FSLIEG 306
            +LI+G
Sbjct: 589 TALIDG 594



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 155/313 (49%), Gaps = 14/313 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+ +TYG+ V G+CK  +++EA  +L+ M   G  P  + Y+ LIDG+C  G L+ A   
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M ++G  P   TY+ LI  L  ++++  A  +L  M E    P+ I Y  +I+G C+
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A+ L   M  KG  P ++TYT++I    K  ++ +  +L     AKG  P+ V 
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI+  C  G ++ A  LL EM +         Y  ++ G  R+  +     LLD++ 
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG--LLDEI- 870

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS--KGITPDDNTYFSLIE 305
                 ++++  P    Y  LI   CK    +LA EL +EM S       D + Y SLIE
Sbjct: 871 -----AENVAV-PIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIE 924

Query: 306 GI---ASVDKAAE 315
            +   + VDKA E
Sbjct: 925 SLSLASKVDKAFE 937



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 120/256 (46%), Gaps = 4/256 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+ YTY S +  + K+ RL+ A ++L +M EN   P  + Y  +IDG C  G 
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+     M ++G  P   TY  +I       K+ +  +++++MG KG  P+ +TY +
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G    A  L DEM        M  Y  +I   +++   I +  L +      
Sbjct: 817 LINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNRE--FIISLGLLDEIAENV 874

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH--PDEVTYNTLMHGRCRQGKVEE 238
            +P I  +  LID  C  G +E A  L KEM     +   D+  Y++L+       KV++
Sbjct: 875 AVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDK 934

Query: 239 ARRLLDQMKRRGIKPD 254
           A  L   M +RG  P+
Sbjct: 935 AFELYADMIKRGGIPE 950



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 6/294 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G    A   L ++K+ G  P+ +TYN L+  +     L+ A+    EM   G     
Sbjct: 208 CRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDG 267

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            T    +H L    +  EA  ++++   K    D++ Y  +I+G C     ++A      
Sbjct: 268 YTLGCFVHLLCKAGRWREALALIEKEEFK---LDTVIYTQMISGLCEASLFEEAMDFLSR 324

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M      P ++TY  L+    ++ ++    ++    + +G  P   +FN+LI  +C +G+
Sbjct: 325 MRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGD 384

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFN 259
              A+ LLK+M      P  V YN L+ G C   K+     L    K  G   D H+  N
Sbjct: 385 YSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLN 444

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
             ++  + L + LC   + + A  ++REM+SKG  PD +TY  +I  + +  K 
Sbjct: 445 --KVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 40/266 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+   Y   + G+CK G+ +EA R++  M+E G  P  VTY  +IDG+   G 
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGK 791

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------HELLME-------------RK 95
           ++       +M  +G  P   TY +LI            H+LL E             RK
Sbjct: 792 VDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRK 851

Query: 96  MVEADD--------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI----H 143
           ++E  +        +L E+ E   VP    Y ILI+ +C+ G  + A  LH EM     +
Sbjct: 852 VIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSY 911

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
                 +  Y+SLI  LS  +++ +A +L+ + + +G +P++ +F  L+ G       E 
Sbjct: 912 SAADKDL--YSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEE 969

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHG 229
           A  L   + +M VH    +   L H 
Sbjct: 970 ALQLSDCICQM-VHVSNSSSLILKHA 994



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 111/276 (40%), Gaps = 10/276 (3%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           ++ G   T   Y+ L++     GN  +   F  E+  +         N+LI +       
Sbjct: 154 RQIGYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLW 213

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
             A + L  + + G  P  +TYN L+  +        A+ +H EM   G      T    
Sbjct: 214 NVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCF 273

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           + +L K  R  EA  L E    +    D V++  +I G C     E A   L  M     
Sbjct: 274 VHLLCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSC 330

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P+ VTY  L+ G  R+ ++   +R+L  M   G         P+R  +N+LI   C++ 
Sbjct: 331 IPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCY-------PSRRIFNSLIHAYCRSG 383

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           +   A +LL++M   G  P    Y  LI GI   +K
Sbjct: 384 DYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 167/337 (49%), Gaps = 42/337 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P+ + Y + +  +CK    +EA  + ++M + GL P  VTY+ LID +C +G L+ A
Sbjct: 362 GVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTA 421

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            SF  EM+  G+ P+   YN LI+       +  A+ ++ EM  K + P  +TY  L+ G
Sbjct: 422 LSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGG 481

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G   KA  L+ EM  KGI P++ T+T+L+  L +   + +A +LF       + P+
Sbjct: 482 YCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPN 541

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD------------------------- 219
            V +N +I+G+C  GN+ +AF  L EM    + PD                         
Sbjct: 542 RVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601

Query: 220 ----------EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                     E+ Y  L+HG CR+GK+EEA  +   M  RG+  D +        Y  LI
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLV-------CYGVLI 654

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            G  K+++  +   LL+EM  +G+ PDD  Y S+I+ 
Sbjct: 655 DGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDA 691



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 163/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  + ++PD  TY + V G+CK    E    M+++M      P+    ++L++G   +G 
Sbjct: 288 LAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGK 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A +    + + G+ P    YN LI  L   R   EA+ +   MG+ G+ P+ +TY+I
Sbjct: 348 VEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSI 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +CR G    A S   EMI  G++P++  Y SLI    K   +  A+ L    + K 
Sbjct: 408 LIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKK 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V + +L+ G+C+ G I +A  L  EM    + P   T+ TL+ G  R G + +A 
Sbjct: 468 LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAV 527

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M    +KP+       R+TYN +I+G C+      A E L EM+ KGI PD  +Y
Sbjct: 528 KLFTEMAEWNVKPN-------RVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSY 580

Query: 301 FSLIEGIASVDKAAES 316
             LI G+    +A+E+
Sbjct: 581 RPLIHGLCLTGQASEA 596



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 154/310 (49%), Gaps = 7/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            P      S V G+ K G++EEA  +++++ E G+ P    YN LID  C   N + A  
Sbjct: 329 SPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAEL 388

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D M K G+ P   TY++LI       K+  A   L EM + G+ P    YN LING+C
Sbjct: 389 LFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHC 448

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G+   A SL  EMI+K ++PT++TYTSL+     + ++ +A +L+     KG++P I 
Sbjct: 449 KFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIY 508

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  L+ G    G I  A  L  EM    V P+ VTYN ++ G C +G + +A   L++M
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEM 568

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +GI PD  S+ P       LI GLC   +   A+  +  +       ++  Y  L+ G
Sbjct: 569 IEKGIVPDTYSYRP-------LIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHG 621

Query: 307 IASVDKAAES 316
                K  E+
Sbjct: 622 FCREGKLEEA 631



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 164/324 (50%), Gaps = 13/324 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ ++P   TY S + G C +G++ +A R+  +M   G+VP+  T+ TL+ G    G 
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGL 522

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM +  + P   TYN++I     E  M +A + L EM EKGIVPD+ +Y  
Sbjct: 523 IRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRP 582

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C  G A +A    D + HKG  +   + YT L+    ++ ++ EA  + ++   +
Sbjct: 583 LIHGLCLTGQASEAKVFVDGL-HKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLR 641

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D+V +  LIDG   + + +    LLKEM    + PD+V Y +++  + + G  +EA
Sbjct: 642 GVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             + D M   G  P+ +       TY A+I GLCK    + AE L  +M      P+  T
Sbjct: 702 FGIWDLMINEGCVPNEV-------TYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVT 754

Query: 300 YFS----LIEGIASVDKAAESSNS 319
           Y      L +G+  + KA E  N+
Sbjct: 755 YGCFLDILTKGVGDMKKAVELHNA 778



 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 157/334 (47%), Gaps = 42/334 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD+Y+Y   + G+C  G+  EA   ++ + +       + Y  L+ G+C +G 
Sbjct: 568 MIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A S   +M  +G+      Y +LI   L  +       +LKEM ++G+ PD + Y  
Sbjct: 628 LEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTS 687

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-------- 172
           +I+   + G+ K+AF + D MI++G  P  +TYT++I  L K   + EA+ L        
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGN 747

Query: 173 ---------------------------FENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                        N + KG+L +   +N LI G C  G +E A 
Sbjct: 748 SVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEAS 807

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+  M    V PD +TY T++   CR+  V++A  L + M  +GI+PD       R+ Y
Sbjct: 808 ELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPD-------RVAY 860

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           N LI G C   E   A EL  EM+ +G+ P+  T
Sbjct: 861 NTLIHGCCVAGEMGKATELRNEMLRQGLKPNTET 894



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 151/312 (48%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    + P+  T  + + G+ K      A  + + M   G+ P    Y  +I   C   +
Sbjct: 183 MTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKD 242

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     +M   G       YN+LI  L  ++K+ EA  + K++  K + PD +TY  
Sbjct: 243 LSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCT 302

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+    +    + DEM+     P+    +SL+  L K+ ++ EA  L +     G
Sbjct: 303 LVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFG 362

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I ++NALID  C   N + A  L   M ++ + P++VTY+ L+   CR+GK++ A 
Sbjct: 363 VSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTAL 422

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L +M   G+KP   S  P    YN+LI G CK  +   AE L+ EM++K + P   TY
Sbjct: 423 SFLGEMIDMGLKP---SVYP----YNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTY 475

Query: 301 FSLIEGIASVDK 312
            SL+ G  S  K
Sbjct: 476 TSLMGGYCSKGK 487



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 8/229 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD   Y S +    K G  +EA  + + M   G VP  VTY  +I+G C  G 
Sbjct: 673 MHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGF 732

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME----RKMVEADDMLKEMGEKGIVPDSI 116
           +  A     +M     +P   TY   +  L       +K VE  + +     KG++ ++ 
Sbjct: 733 VNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAIL----KGLLANTA 788

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN+LI G+CR G  ++A  L   MI  G+ P  +TYT++I  L ++N + +A +L+ + 
Sbjct: 789 TYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSM 848

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
             KG+ PD V +N LI G C  G + +A  L  EM R  + P+  T  T
Sbjct: 849 TEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSET 897



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 8/259 (3%)

Query: 48  YNTLIDGYC-NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
           ++ LI  Y  ++  L+    F+  M K  ++P   T + L+H L+  R    A ++  +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDM 218

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
              GI PD   Y  +I   C   +  +A  +  +M   G    ++ Y  LI  L K+ ++
Sbjct: 219 INVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKV 278

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            EA  + ++   K + PD+V +  L+ G C     E    ++ EM R++  P E   ++L
Sbjct: 279 WEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSL 338

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           + G  ++GKVEEA  L+ ++   G+ P+          YNALI  LCK +  D AE L  
Sbjct: 339 VEGLRKRGKVEEALNLVKRVAEFGVSPNI-------FVYNALIDSLCKGRNFDEAELLFD 391

Query: 287 EMVSKGITPDDNTYFSLIE 305
            M   G+ P+D TY  LI+
Sbjct: 392 RMGKIGLCPNDVTYSILID 410



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 35/192 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTY------------ 48
           M + G  P+  TY + ++G+CK G + EA  +  +M+    VP  VTY            
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVG 767

Query: 49  -----------------------NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                  N LI G+C +G +E A      M+  G+ P   TY  
Sbjct: 768 DMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTT 827

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I EL     + +A ++   M EKGI PD + YN LI+G C  G   KA  L +EM+ +G
Sbjct: 828 MISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQG 887

Query: 146 IQPTMLTYTSLI 157
           ++P   T  + I
Sbjct: 888 LKPNTETSETTI 899



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 69/120 (57%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+  ++ TY   + G C++GR+EEAS ++ +M  +G+ P  +TY T+I   C + +++ 
Sbjct: 781 KGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKK 840

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    + M ++GI P    YN LIH   +  +M +A ++  EM  +G+ P++ T    I+
Sbjct: 841 AIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTIS 900



 Score = 44.3 bits (103), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 27/194 (13%)

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEA------------------DQLFENFLAKGMLP 183
           +H+G   +  ++  LI  L + N    A                  D LF  +  K  L 
Sbjct: 96  LHRGFDHSTASFCILIHALVQANLFWPASSLLQTLLLRALKPSEVFDALFSCY-EKCKLS 154

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
               F+ LI  +  +  +     + K M  ++ + P+  T + L+HG  +      A  L
Sbjct: 155 SSSSFDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMEL 214

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D M   GI+PD          Y  +I+ LC+ ++   A+E++ +M + G   +   Y  
Sbjct: 215 FDDMINVGIRPD-------VYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNV 267

Query: 303 LIEGIASVDKAAES 316
           LI+G+    K  E+
Sbjct: 268 LIDGLCKKQKVWEA 281


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 170/312 (54%), Gaps = 11/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P   T+ + ++G+C EGR+ EA+ ++ +M   GL    VTY T+++G C  G+ + A
Sbjct: 221 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 280

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   +M +  I P    Y+ +I  L  +    +A  +  EM EKGI P+  TYN +I+G
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G    A  L  +MI + I P +LT+ +LI    K+ ++ EA++L +  L + + PD
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N++I G C +   + A    K M  +   PD VT+NT++   CR  +V+E  +LL 
Sbjct: 401 TVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 456

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++ RRG+       N T  TYN LI G C+    + A++L +EM+S G+ PD  T   L+
Sbjct: 457 EISRRGLVA-----NTT--TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 509

Query: 305 EGIASVDKAAES 316
            G    +K  E+
Sbjct: 510 YGFCENEKLEEA 521



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 165/336 (49%), Gaps = 32/336 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D  TYG+ V+GMCK G  + A  +L +M+E  + P  V Y+ +ID  C  G+
Sbjct: 252 MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGH 311

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+++GI P   TYN +I       +  +A  +L++M E+ I PD +T+N 
Sbjct: 312 HSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 371

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G   +A  L DEM+H+ I P  +TY S+I+   K NR  +A  +F+   +  
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 429

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V FN +ID +C    ++    LL+E+ R  +  +  TYNTL+HG C    +  A+
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
            L  +M   G+ PD I+ N                               + YN +I G+
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 547

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + D A +L   +   G+ PD  TY  +I G  
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 168/331 (50%), Gaps = 44/331 (13%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD  T+ + + G+C E R+ EA  +   M E G +                     A
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE--------------------A 210

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +  D+MV+ G+ P   T+N LI+ L +E +++EA  ++ +M  KG+  D +TY  ++NG
Sbjct: 211 VALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+ K A +L  +M    I+P ++ Y+++I  L K     +A  LF   L KG+ P+
Sbjct: 271 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 330

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +IDG C+ G    A  LL++M   +++PD +T+N L+    ++GK+ EA +L D
Sbjct: 331 VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCD 390

Query: 245 QMKRRGIKPDHISFN------------------------PTRLTYNALIQGLCKNQEGDL 280
           +M  R I PD +++N                        P  +T+N +I   C+ +  D 
Sbjct: 391 EMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDE 450

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVD 311
             +LLRE+  +G+  +  TY +LI G   VD
Sbjct: 451 GMQLLREISRRGLVANTTTYNTLIHGFCEVD 481



 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 164/349 (46%), Gaps = 41/349 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++PD   Y + +  +CK+G   +A  +  +M E G+ P   TYN +IDG+C+ G 
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M+++ I P   T+N LI   + E K+ EA+ +  EM  + I PD++TYN 
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406

Query: 121 LINGYC---RCGNAKKAFSLHD----------------------------EMIHKGIQPT 149
           +I G+C   R  +AK  F L                              E+  +G+   
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVAN 466

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY +LI    + + +  A  LF+  ++ G+ PD +  N L+ G C N  +E A  L +
Sbjct: 467 TTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE 526

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            +   K+  D V YN ++HG C+  KV+EA  L   +   G++PD         TYN +I
Sbjct: 527 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMI 579

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
            G C       A  L  +M   G  PD++TY +LI G      +DK+ E
Sbjct: 580 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 628



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD+ TY S + G CK  R ++A  M + M      P  VT+NT+ID YC    
Sbjct: 392 MLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKR 447

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       E+ ++G++   +TYN LIH       +  A D+ +EM   G+ PD+IT NI
Sbjct: 448 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNI 507

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+C     ++A  L + +    I    + Y  +I  + K +++ EA  LF +    G
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHG 567

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N +I G C    I  A  L  +M      PD  TYNTL+ G  + G+++++ 
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSI 627

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
            L+ +M+  G   D  +            + +C+  + ++ E  LR  ++
Sbjct: 628 ELISEMRSNGFSGDAFTIKMAE-------EIICRVSDEEIIENYLRPKIN 670



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 136/272 (50%), Gaps = 22/272 (8%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +L+ A  F D MV+     TA   N +I   +   +   A  + ++M  + I  +  ++N
Sbjct: 86  SLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFN 145

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM------------- 166
           ILI  +C C     + S   ++   G QP ++T+ +L+  L  ++R+             
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205

Query: 167 --IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
             +EA  LF+  +  G+ P ++ FN LI+G C  G +  A +L+ +M    +H D VTY 
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           T+++G C+ G  + A  LL +M+   IKPD +        Y+A+I  LCK+     A+ L
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVV-------IYSAIIDRLCKDGHHSDAQYL 318

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             EM+ KGI P+  TY  +I+G  S  + +++
Sbjct: 319 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDA 350



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 8/193 (4%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A    D M+      T +    +I V  + NR   A  L+     + +  +I  FN LI 
Sbjct: 90  AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIK 149

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI-- 251
             C    +  + S   ++ ++   PD VT+NTL+HG C + ++ EA  L   M   G   
Sbjct: 150 CFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE 209

Query: 252 ------KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                 +   I   P  +T+N LI GLC       A  L+ +MV KG+  D  TY +++ 
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 306 GIASVDKAAESSN 318
           G+  +     + N
Sbjct: 270 GMCKMGDTKSALN 282


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+   ++ +C EG  E++S ++++M+++G  PT VTYNT++  YC KG 
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M  +G+     TYN+LIH+L    ++ +   +L++M ++ I P+ +TYN 
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+   G    A  L +EM+  G+ P  +T+ +LI     +    EA ++F    AKG
Sbjct: 304 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  L+DG C N   + A      M R  V    +TY  ++ G C+ G ++EA 
Sbjct: 364 LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAV 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M + GI PD +       TY+ALI G CK      A+E++  +   G++P+   Y
Sbjct: 424 VLLNEMSKDGIDPDIV-------TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 476

Query: 301 FSLI 304
            +LI
Sbjct: 477 STLI 480



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P  YT  + +  + K G        L++M +  + P   T+N LI+  C +G+ E +
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M K G  PT  TYN ++H    + +   A ++L  M  KG+  D  TYN+LI+ 
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     K + L  +M  + I P  +TY +LI   S + +++ A QL    L+ G+ P+
Sbjct: 273 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V FNALIDGH + GN + A  +   M+   + P EV+Y  L+ G C+  + + AR    
Sbjct: 333 HVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYM 392

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +MKR G+          R+TY  +I GLCKN   D A  LL EM   GI PD  TY +LI
Sbjct: 393 RMKRNGVCVG-------RITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI 445

Query: 305 EGIASVDK 312
            G   V +
Sbjct: 446 NGFCKVGR 453



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 6/318 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY + ++G CK GR + A  ++ ++   GL P  + Y+TLI   C  G 
Sbjct: 429 MSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M+ +G      T+N+L+  L    K+ EA++ ++ M   GI+P++++++ 
Sbjct: 489 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 548

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY   G   KAFS+ DEM   G  PT  TY SL+  L K   + EA++  ++  A  
Sbjct: 549 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVP 608

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D VM+N L+   C +GN+ +A SL  EM +  + PD  TY +L+ G CR+GK   A 
Sbjct: 609 AAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI 668

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               + + RG      +  P ++ Y   + G+ K  +         +M + G TPD  T 
Sbjct: 669 LFAKEAEARG------NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTT 722

Query: 301 FSLIEGIASVDKAAESSN 318
            ++I+G + + K  ++++
Sbjct: 723 NAMIDGYSRMGKIEKTND 740



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G+ P   +YG  + G+CK    + A     +MK NG+    +TY  +IDG C  G 
Sbjct: 359 MEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGF 418

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM K GI P   TY+ LI+      +   A +++  +   G+ P+ I Y+ 
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYST 478

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   CR G  K+A  +++ MI +G      T+  L+  L K  ++ EA++      + G
Sbjct: 479 LIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V F+ LI+G+  +G   +AFS+  EM ++  HP   TY +L+ G C+ G + EA 
Sbjct: 539 ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAE 598

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + L  +       D +        YN L+  +CK+     A  L  EMV + I PD  TY
Sbjct: 599 KFLKSLHAVPAAVDTV-------MYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 651

Query: 301 FSLIEGIA 308
            SLI G+ 
Sbjct: 652 TSLISGLC 659



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+GV  D  TY   +  +C+  R+ +   +L  M++  + P  VTYNTLI+G+ N+G 
Sbjct: 254 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    +EM+  G+ P   T+N LI   + E    EA  M   M  KG+ P  ++Y +
Sbjct: 314 VLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+      A   +  M   G+    +TYT +I  L K   + EA  L       G
Sbjct: 374 LLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++ALI+G C  G  + A  ++  + R+ + P+ + Y+TL++  CR G ++EA 
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ + M   G   DH        T+N L+  LCK  +   AEE +R M S GI P+  ++
Sbjct: 494 RIYEAMILEGHTRDH-------FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 546

Query: 301 FSLIEG 306
             LI G
Sbjct: 547 DCLING 552



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           M  R + PDSYTY S +SG+C++G+   A    ++ +  G ++P  V Y   +DG    G
Sbjct: 639 MVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAG 698

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +    FR++M   G  P   T N +I       K+ + +D+L EMG +   P+  TYN
Sbjct: 699 QWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYN 758

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL++GY +  +   +F L+  +I  GI P  LT  SL+  + + N +    ++ + F+ +
Sbjct: 759 ILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICR 818

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D   FN LI   C NG I  AF L+K M  + +  D+ T + ++    R  + +E+
Sbjct: 819 GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 878

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R +L +M ++GI P+          Y  LI GLC+  +   A  +  EM++  I P +  
Sbjct: 879 RMVLHEMSKQGISPE-------SRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVA 931

Query: 300 YFSLIEGIASVDKAAESS 317
             +++  +A   KA E++
Sbjct: 932 ESAMVRALAKCGKADEAT 949



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 8/290 (2%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G+ PD  T  S V G+C+   LE   ++L+     G+     T+N LI   C  G +  A
Sbjct: 784  GILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWA 843

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            F     M   GI     T + ++  L    +  E+  +L EM ++GI P+S  Y  LING
Sbjct: 844  FDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLING 903

Query: 125  YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             CR G+ K AF + +EMI   I P  +  ++++  L+K  +  EA  L    L   ++P 
Sbjct: 904  LCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPT 963

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            I  F  L+   C NGN+  A  L   M    +  D V+YN L+ G C +G +  A  L +
Sbjct: 964  IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYE 1023

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG-DLAEELLREMVSKGI 293
            +MK  G       F     TY ALI+GL   +     A+ +L++++++G 
Sbjct: 1024 EMKGDG-------FLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1066



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 161/388 (41%), Gaps = 78/388 (20%)

Query: 2    KSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            ++RG V P+   Y  FV GM K G+ +      EQM   G  P  VT N +IDGY   G 
Sbjct: 675  EARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGK 734

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIH----------ELLMERKMV------------- 97
            +E       EM  Q   P  +TYN+L+H            L+ R ++             
Sbjct: 735  IEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHS 794

Query: 98   ------EAD------DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E++       +LK    +G+  D  T+N+LI+  C  G    AF L   M   G
Sbjct: 795  LVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 854

Query: 146  IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            I     T  +++ VL++ +R  E+  +      +G+ P+   +  LI+G C  G+I+ AF
Sbjct: 855  ISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAF 914

Query: 206  S-----------------------------------LLKEMDRMKVHPDEVTYNTLMHGR 230
                                                LL+ M +MK+ P   ++ TLMH  
Sbjct: 915  VVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLC 974

Query: 231  CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
            C+ G V EA  L   M   G+K D +S       YN LI GLC   +  LA EL  EM  
Sbjct: 975  CKNGNVIEALELRVVMSNCGLKLDLVS-------YNVLITGLCAKGDMALAFELYEEMKG 1027

Query: 291  KGITPDDNTYFSLIEGIASVDKAAESSN 318
             G   +  TY +LI G+ + + A   ++
Sbjct: 1028 DGFLANATTYKALIRGLLARETAFSGAD 1055



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S Y++LI   L E  + ++ ++ + MG  G  P   T N ++    + G     +S   E
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+ + I P + T+  LI VL  +    ++  L +     G  P IV +N ++  +C  G 
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            + A  LL  M    V  D  TYN L+H  CR  ++ +   LL  M++R I P+ +    
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---- 299

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              TYN LI G     +  +A +LL EM+S G++P+  T+ +LI+G
Sbjct: 300 ---TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDG 342



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 130/275 (47%), Gaps = 26/275 (9%)

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLI---HELLMERKMVEADDMLKEM----GEKGIVPD 114
           ++A  F   +VKQ  + T     L+    H L+  R    A  +LKE+    G+   V  
Sbjct: 51  KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFG 110

Query: 115 SI------------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           ++             Y+ILI  Y R G  + +  +   M   G  P++ T  +++  + K
Sbjct: 111 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 170

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
               +      +  L + + PD+  FN LI+  C  G+ E++  L+++M++    P  VT
Sbjct: 171 SGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVT 230

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           YNT++H  C++G+ + A  LLD MK +G+  D         TYN LI  LC++       
Sbjct: 231 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDAD-------VCTYNMLIHDLCRSNRIAKGY 283

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            LLR+M  + I P++ TY +LI G ++  K   +S
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIAS 318



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S G+  D  T  + VS + +  R +E+  +L +M + G+ P +  Y  LI+G C  G+
Sbjct: 850  MTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGD 909

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ AF  ++EM+   I P     + ++  L    K  EA  +L+ M +  +VP   ++  
Sbjct: 910  IKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTT 969

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++  C+ GN  +A  L   M + G++  +++Y  LI  L  +  M  A +L+E     G
Sbjct: 970  LMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG 1029

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFS 206
             L +   + ALI G       E AFS
Sbjct: 1030 FLANATTYKALIRGLLAR---ETAFS 1052


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 165/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 135 GYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 194

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++  EM +KG+VP+ +T+  LI+G
Sbjct: 195 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 254

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 255 HCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPD 314

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 315 KISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLR 374

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G++PD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 375 EMLSVGLRPD-------TGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 427

Query: 305 EG 306
            G
Sbjct: 428 NG 429



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 175/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 60  LETQGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 119

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E  +  A  +   + + G+ P  +++N
Sbjct: 120 YFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFN 179

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 180 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 239

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 240 GLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 299

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
           + L+D+M+ +G+KPD IS+                            RL    Y ALI G
Sbjct: 300 QDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISG 359

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ PD  TY  +I
Sbjct: 360 LCQEGRSIDAEKMLREMLSVGLRPDTGTYTMII 392



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 138/229 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 201 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 260

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD I+Y  
Sbjct: 261 VDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTT 320

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R I+A+++    L+ G
Sbjct: 321 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVG 380

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++     LLKEM R    P  VTYN LM+G
Sbjct: 381 LRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 170/306 (55%), Gaps = 9/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+ D  TYG+ + G+C    +++A  ++ +M E+G+ P  V Y++L+ GYC  G 
Sbjct: 141 MRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGR 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       EM ++GI P    Y  LI  L    K  +A  ++  M  +G+ P+ +TYN+
Sbjct: 201 WEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNV 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL-AK 179
           LIN  C+ G+ K+A  +  +M  KG+ P ++TY +LI  LS    M EA  L E  +  K
Sbjct: 261 LINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGK 320

Query: 180 GML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            ++ P++V FN++I G C  G + +AF +   M+      + VTYN L+ G  R  KV +
Sbjct: 321 NIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRK 380

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L+D+M   G++PD  SF     TY+ LI+G CK  + D AE+LL  M  +GI P+  
Sbjct: 381 AMELMDEMTSLGLEPD--SF-----TYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELF 433

Query: 299 TYFSLI 304
            Y  L+
Sbjct: 434 HYIPLL 439



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 168/337 (49%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+   Y S + G CK GR E+  ++  +M E G+ P  V Y  LID  C  G 
Sbjct: 176 MCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGK 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D MV++G+ P   TYN+LI+ +  E  + EA  +LK+M EKG+ PD +TYN 
Sbjct: 236 AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNT 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           LI G        +A  L +EM+     ++P ++T+ S+I  L    RM +A Q+      
Sbjct: 296 LIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEE 355

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G + ++V +N LI G      + +A  L+ EM  + + PD  TY+ L+ G C+  +V+ 
Sbjct: 356 TGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDR 415

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLT---------------------------YNALIQG 271
           A  LL  M+ RGI+P+   + P  +                            Y+ +I G
Sbjct: 416 AEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHG 475

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            CK  +   A+ELL+ +V +G+TPD  TY  +I   A
Sbjct: 476 ACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFA 512



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 166/311 (53%), Gaps = 10/311 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++P+  TY   ++ MCKEG ++EA  +L++M E G+ P  VTYNTLI G  +   
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLE 305

Query: 61  LEMAFSFRDEMV--KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           ++ A    +EMV  K  + P   T+N +I  L    +M +A  +   M E G + + +TY
Sbjct: 306 MDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTY 365

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N+LI G  R    +KA  L DEM   G++P   TY+ LI    K  ++  A+ L      
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P++  +  L+   C  G +ERA +L  EMD      D V Y+T++HG C+ G ++ 
Sbjct: 426 RGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKT 484

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A+ LL  +   G+ PD +       TY+ +I    K+ + + A  +L++M + G  PD  
Sbjct: 485 AKELLKSIVDEGLTPDAV-------TYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVA 537

Query: 299 TYFSLIEGIAS 309
            + SLI+G ++
Sbjct: 538 VFDSLIQGYST 548



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 164/312 (52%), Gaps = 12/312 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P++ +Y   +  +C +   ++A  +L  M+  G+    VTY TLI G C+   ++ A  
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EM + GI P    Y+ L+       +  +   +  EM EKGI PD + Y  LI+  C
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G AKKA  + D M+ +G++P ++TY  LI  + K+  + EA  + +    KG+ PD+V
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV 291

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMK--VHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +N LI G      ++ A  LL+EM R K  V P+ VT+N+++ G C  G++ +A ++  
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M+  G   + +       TYN LI GL +  +   A EL+ EM S G+ PD  TY  LI
Sbjct: 352 MMEETGCMVNLV-------TYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILI 404

Query: 305 EG---IASVDKA 313
           +G   +  VD+A
Sbjct: 405 KGFCKMWQVDRA 416



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 10/305 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M  +GV PD  TY + + G+     ++EA  +LE+M   +N + P  VT+N++I G C+ 
Sbjct: 281 MSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDI 340

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +  AF  R  M + G M    TYNLLI  LL   K+ +A +++ EM   G+ PDS TY
Sbjct: 341 GRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTY 400

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +ILI G+C+     +A  L   M  +GI+P +  Y  L+  + +Q  M  A  LF N + 
Sbjct: 401 SILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLF-NEMD 459

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
                D+V ++ +I G C  G+++ A  LLK +    + PD VTY+ +++   + G +E 
Sbjct: 460 NNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEA 519

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  +L QM   G  PD   F       ++LIQG     E +   EL+REM++K I  D  
Sbjct: 520 ANGVLKQMTASGFLPDVAVF-------DSLIQGYSTKGEINKVLELIREMITKNIALDSK 572

Query: 299 TYFSL 303
              +L
Sbjct: 573 IISTL 577



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 152/292 (52%), Gaps = 15/292 (5%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ---GIMPTAST 82
           L EA+ +L+ +     V  AV+YNT++   C +G+ + A +    M  +      P A +
Sbjct: 61  LGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y +L+  L  +R   +A  +L+ M   G+  D +TY  LI G C      KA  L  EM 
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             GI+P ++ Y+SL+    K  R  +  ++F     KG+ PD+VM+  LID  C  G  +
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           +A  ++  M R  + P+ VTYN L++  C++G V+EA  +L +M  +G+ PD +      
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV------ 291

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKG--ITPDDNTYFSLIEGIASVDK 312
            TYN LI+GL    E D A  LL EMV     + P+  T+ S+I+G+  + +
Sbjct: 292 -TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGR 342



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 45/208 (21%)

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMI---HKGIQPTMLTYTSLIFVLSKQNRMIE 168
           V D+++YN ++   CR G+  +A +L   M    H   +P  ++YT L+       R + 
Sbjct: 74  VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLM-------RALC 126

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           AD+L                             ++A  LL+ M    V  D VTY TL+ 
Sbjct: 127 ADRL----------------------------ADQAVGLLRSMRSAGVRADVVTYGTLIR 158

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           G C   +V++A  L+ +M   GI+P+ +        Y++L+QG CK+   +   ++  EM
Sbjct: 159 GLCDAAEVDKAVELMGEMCESGIEPNVV-------VYSSLLQGYCKSGRWEDVGKVFVEM 211

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAES 316
             KGI PD   Y  LI+ +  V KA ++
Sbjct: 212 SEKGIEPDVVMYTGLIDSLCKVGKAKKA 239



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 10/115 (8%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A SLL  +  ++   D V+YNT++   CR+G  + A  LL  M    ++P H +  P  +
Sbjct: 64  ATSLLDALPSVR---DAVSYNTVLTALCRRGHHDRAGALLRAMS---LEP-HPACRPNAV 116

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
           +Y  L++ LC ++  D A  LLR M S G+  D  TY +LI G+   A VDKA E
Sbjct: 117 SYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171


>gi|255660982|gb|ACU25660.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 350

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 163/294 (55%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 59  MKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEAN 118

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 119 LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 178

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++ +A QL+    +KG
Sbjct: 179 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 238

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 239 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 298

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 299 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 345



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 134/264 (50%), Gaps = 8/264 (3%)

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           N +++GY     ++  F   + M  +G   + S++N+++  L    K+ E   + + M +
Sbjct: 3   NAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNDKVDEVISIWELMKK 61

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
            G V DSITY IL++G+C+ G   K+  + +    KG       Y+++I  L K+  +  
Sbjct: 62  SGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDR 121

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  +    +  G  P+  ++N LI+G       E A  + +EM  M   P  +TYNTL++
Sbjct: 122 AVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLIN 181

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           G C+     EA  L+ ++  +G+       NP  +TY+ L++GLC + + + A +L  ++
Sbjct: 182 GLCKNEMFGEAYNLVKELLDKGL-------NPGVITYSMLMKGLCLDHKVEKALQLWNQV 234

Query: 289 VSKGITPDDNTYFSLIEGIASVDK 312
            SKG  PD   +  LI G+ SV K
Sbjct: 235 TSKGFKPDVQMHNILIHGLCSVGK 258



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 114/222 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 129 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 188

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+ +A  +  ++  KG  PD   +NI
Sbjct: 189 FGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNI 248

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 249 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 308

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 309 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 350



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 99/201 (49%), Gaps = 10/201 (4%)

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N ++NGY R    K  F L + M  +G   ++ ++  ++  L   +++ E   ++E    
Sbjct: 3   NAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNDKVDEVISIWELMKK 61

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G + D + +  L+ G C NG I+++  +L+  ++     D   Y+ +++G C++  ++ 
Sbjct: 62  SGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDR 121

Query: 239 ARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           A  +L+ M + G KP+ H+        YN LI GL    + + A  + REM +   +P  
Sbjct: 122 AVSVLNGMIKSGCKPNAHV--------YNTLINGLVGASKFEDAIRVFREMGTMHCSPTI 173

Query: 298 NTYFSLIEGIASVDKAAESSN 318
            TY +LI G+   +   E+ N
Sbjct: 174 ITYNTLINGLCKNEMFGEAYN 194


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 13/307 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+  V  D Y Y + ++  C+ G +  A+++L++   NG+ P   TY  LI+G+C  G 
Sbjct: 273 MKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQ 332

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK---EMGEKGIVPDSIT 117
           +E A     +M  QG+      +N +I +    + MV  DD LK    M + G+  D  T
Sbjct: 333 MEAAEMLLADMQGQGVGLNQIIFNTMI-DGYCRKGMV--DDALKIKAAMEKMGVELDIYT 389

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN L  G CR     +A +L   MI  G+ P  +TYT+LI +  K   M+EA +LF    
Sbjct: 390 YNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMA 449

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG  P +V +N +IDG+   G+I  A    KEM++    PD  TY +L+HG C  GKV+
Sbjct: 450 EKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVD 509

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A +L ++MK+RG +P+ ++       Y ALI GL K    + A +L  +M+  G+ PDD
Sbjct: 510 VALKLFEEMKQRGTEPNVVA-------YTALISGLAKEGRSEAAFQLYDDMLKAGLIPDD 562

Query: 298 NTYFSLI 304
           + Y +L+
Sbjct: 563 SLYSALV 569



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 154/290 (53%), Gaps = 7/290 (2%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V G+CK GR+++A R+L+ M  +G+   A+ YN+L+D Y  + +        + M  +GI
Sbjct: 184 VDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGI 243

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
             T  TY +L+  L   R + + + +  EM    +V D   Y  +IN YCR GN ++A  
Sbjct: 244 EATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAK 303

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           + DE +  G++P   TY  LI    K  +M  A+ L  +   +G+  + ++FN +IDG+C
Sbjct: 304 VLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYC 363

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G ++ A  +   M++M V  D  TYNTL  G CR  +++EA+ LL  M   G+ P+++
Sbjct: 364 RKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYV 423

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                  TY  LI   CK+ +   A  L REM  KG TP   TY  +I+G
Sbjct: 424 -------TYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDG 466



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 151/276 (54%), Gaps = 7/276 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  TYG  ++G CK G++E A  +L  M+  G+    + +NT+IDGYC KG ++ A
Sbjct: 312 GVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDA 371

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              +  M K G+     TYN L   L    ++ EA  +L  M E G+VP+ +TY  LI+ 
Sbjct: 372 LKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISI 431

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G+  +A  L  EM  KG  P+++TY  +I   +K+  + EA++  +    KG +PD
Sbjct: 432 HCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPD 491

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  + +L+ GHC NG ++ A  L +EM +    P+ V Y  L+ G  ++G+ E A +L D
Sbjct: 492 VYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYD 551

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            M + G+ PD          Y+AL+  L  +   D+
Sbjct: 552 DMLKAGLIPDDS-------LYSALVGSLHTDNRKDV 580



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 143/284 (50%), Gaps = 12/284 (4%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVT---YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           GRL +A+ +LE  +  G  P +V+    + ++DG C  G ++ A    D+M + G+   A
Sbjct: 155 GRLADAAGLLE--RALGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNA 212

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
             YN L+   + ++      ++L+ M  +GI     TY IL++      +  K  +L +E
Sbjct: 213 LCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNE 272

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M    +   +  YT++I    +   M  A ++ +  +  G+ P+   +  LI+G C  G 
Sbjct: 273 MKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQ 332

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E A  LL +M    V  +++ +NT++ G CR+G V++A ++   M++ G++ D      
Sbjct: 333 MEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDI----- 387

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
              TYN L  GLC+    D A+ LL  M+  G+ P+  TY +LI
Sbjct: 388 --YTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLI 429



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 41/187 (21%)

Query: 165 RMIEADQLFENFLAKGMLPDIV---MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           R+ +A  L E  L  G  P  V     + ++DG C +G ++ A  LL +M R  V  + +
Sbjct: 156 RLADAAGLLERAL--GSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNAL 213

Query: 222 TYNTLMHGRCRQ---GKVEEARRLLDQMKRRGIKP---------DHIS-----------F 258
            YN+L+    RQ   G+V+E   +L+ M+  GI+          D +S           F
Sbjct: 214 CYNSLLDCYVRQKDDGRVQE---ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALF 270

Query: 259 NPTRLT--------YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           N  +          Y A+I   C+      A ++L E V  G+ P++ TY  LI G   +
Sbjct: 271 NEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKI 330

Query: 311 DK--AAE 315
            +  AAE
Sbjct: 331 GQMEAAE 337


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 174/327 (53%), Gaps = 30/327 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++PD Y+Y   + G+CK G L +A  ++  M  NG++P  VTY+TL+ GYC+KG +  A
Sbjct: 356 GIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEA 415

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EM+     P   T N+L+H L  E ++ EA+++L++M EKG   D++T NI+IN 
Sbjct: 416 NNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINA 475

Query: 125 YCRCGNAKKAFSLHDEMIHKG-----------------------IQPTMLTYTSLIFVLS 161
            C  G   KA  + + M   G                         P ++TY+++I  L 
Sbjct: 476 LCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLC 535

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  R+ +A + F   ++KG+ PD  +++  I   C  G I  AF +LK+M++   +    
Sbjct: 536 KAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQ 595

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TYN+L+ G   + ++ E   L+D+M+ +G+ PD         TYN ++  LC+    + A
Sbjct: 596 TYNSLILGLGSKNQIFELYGLIDEMREKGVSPD-------VCTYNHMLNCLCEGGRINDA 648

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIA 308
             +L EM+ KGI+P+ +++  LI+   
Sbjct: 649 PSVLDEMLQKGISPNISSFRILIKAFC 675



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 159/332 (47%), Gaps = 30/332 (9%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            P+  TY   + G CKEG LEEA  +++ MK N       +YN  + G    G L  A+ 
Sbjct: 288 HPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWI 347

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EM+  GI P   +YN+++  L     + +A  ++  M   GI+PD++TY+ L++GYC
Sbjct: 348 VLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYC 407

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G   +A +L  EMI     P   T   L+  L K+ R+ EA+ L +    KG   D V
Sbjct: 408 SKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTV 467

Query: 187 MFNALIDGHCTNGNIERAFSLLKEM-----------------------DRMKVHPDEVTY 223
             N +I+  C NG +++A  ++  M                          K  PD VTY
Sbjct: 468 TCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTY 527

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           +T++ G C+ G++++A++   +M  +G++PD          Y+  I   C+  +   A +
Sbjct: 528 STIISGLCKAGRLDDAKKKFIEMMSKGLQPDSA-------IYDTFIHSFCREGKISSAFQ 580

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           +L++M  +G      TY SLI G+ S ++  E
Sbjct: 581 VLKDMEKRGCNKTLQTYNSLILGLGSKNQIFE 612



 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 151/317 (47%), Gaps = 11/317 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++YT+   +  +C  G LE+A  + ++M   G  P   T+  L+ GYC  G      
Sbjct: 143 VSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGL 202

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +M   GI+P    YN LI     E K  +A+ ++ +M E G+VP   T+N  I+  
Sbjct: 203 ELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISAL 262

Query: 126 CRCGNAKKAFSLHDEM-IHKGI---QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           C  G   +A  +  +M I + +    P ++TY  ++    K+  + EA  L +       
Sbjct: 263 CGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNAN 322

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             ++  +N  + G   NG +  A+ +LKEM  + + PD  +YN +M G C+ G + +AR 
Sbjct: 323 FINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARM 382

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L+  M R GI PD +       TY+ L+ G C   +   A  LL EM+S   +P+  T  
Sbjct: 383 LMGLMIRNGILPDTV-------TYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCN 435

Query: 302 SLIEGIASVDKAAESSN 318
            L+  +    + +E+ N
Sbjct: 436 VLLHSLWKEGRISEAEN 452



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 11/316 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QP  Y Y   +    +E R+E  S + + M    + P A T+N LI   C+ G+LE A  
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARE 168

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D+M  +G  P   T+ +L+          +  ++L +M   GI+P+++ YN LI+ +C
Sbjct: 169 LFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFC 228

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML---- 182
           + G    A  L D+M   G+ P + T+ S I  L    +++EA ++F +      L    
Sbjct: 229 KEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPH 288

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+++ +  ++ G C  G +E A +L+  M R     +  +YN  + G  R GK+ EA  +
Sbjct: 289 PNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIV 348

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L +M   GI+PD  S       YN ++ GLCKN     A  L+  M+  GI PD  TY +
Sbjct: 349 LKEMLGIGIEPDIYS-------YNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYST 401

Query: 303 LIEGIASVDKAAESSN 318
           L+ G  S  K  E++N
Sbjct: 402 LLHGYCSKGKVFEANN 417



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 43/308 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +   PD  TY + +SG+CK GRL++A +   +M   GL P +  Y+T I  +C +G 
Sbjct: 515 ISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGK 574

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF    +M K+G   T  TYN LI  L  + ++ E   ++ EM EKG+ PD  TYN 
Sbjct: 575 ISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNH 634

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  C  G    A S+ DEM+ KGI P + ++  LI    K      + ++FE      
Sbjct: 635 MLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEVFE------ 688

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                +  N         G+ E  ++L+              +N L+ G    GKV EA+
Sbjct: 689 -----IALNVC-------GHKEALYTLM--------------FNELLVG----GKVAEAK 718

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L +    R       SF+     Y  LI  LCK+++ + A ++L  ++ KG   D  ++
Sbjct: 719 ELFETALDR-------SFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASF 771

Query: 301 FSLIEGIA 308
             +I+G  
Sbjct: 772 MPVIDGFG 779



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 1/246 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+QPDS  Y +F+   C+EG++  A ++L+ M++ G   T  TYN+LI G  +K  
Sbjct: 550 MMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQ 609

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +   +   DEM ++G+ P   TYN +++ L    ++ +A  +L EM +KGI P+  ++ I
Sbjct: 610 IFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRI 669

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+  + K +  + +  ++       L YT +   L    ++ EA +LFE  L + 
Sbjct: 670 LIKAFCKACDFKASHEVFEIALNVCGHKEAL-YTLMFNELLVGGKVAEAKELFETALDRS 728

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
                 ++  LID  C +  +E A  +L  +       D  ++  ++ G  + G    A 
Sbjct: 729 FDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVAD 788

Query: 241 RLLDQM 246
            L ++M
Sbjct: 789 ELAERM 794


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/351 (31%), Positives = 170/351 (48%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G +PD YTYG  V+ + K GR++EA    + M E GL P   TYN L+D +   G 
Sbjct: 126 MKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQ 185

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+MA     EM ++G  P+  TYN+L+  L    ++  A  +  +M   G  PDS TY+ 
Sbjct: 186 LDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYST 245

Query: 121 LINGY-----------------------------------CRCGNAKKAFSLHDEMIHKG 145
           L+NG                                     + GN  + + L  EM  KG
Sbjct: 246 LVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKG 305

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P   ++ +++  L K N+   A ++F   +  G  PD++ +N LID +   G+  +A 
Sbjct: 306 FHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQAR 365

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +L+EM      P+  TYN+L+H     G+V+EA  +L++M+  G +PD +       TY
Sbjct: 366 QMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVV-------TY 418

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N L+  L K  E   A  L ++M  KG+ PD  +Y   I+G+A  D+  E+
Sbjct: 419 NRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEA 469



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 159/313 (50%), Gaps = 10/313 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G Q D + Y   +    + G+L+ A  M  +MK  G  P   TY  L++     G ++ 
Sbjct: 94  KGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQE 153

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A SF D M+++G+ P   TYNLL+       ++  A  +  EM  +G  P  +TYNIL++
Sbjct: 154 ARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLD 213

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             C  G    A  L  +M   G  P   TY++L+  L K  R+ EA ++F   + +G+  
Sbjct: 214 ALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAV 273

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +N+L+      GN++R + L+KEM R   HPD  ++NT+M    +  K + AR + 
Sbjct: 274 DLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVF 333

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M   G KPD IS       YN LI    +  +   A ++L EMV  G  P+  TY SL
Sbjct: 334 ARMVESGCKPDLIS-------YNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSL 386

Query: 304 IEGIAS---VDKA 313
           I  +A+   VD+A
Sbjct: 387 IHWLATDGQVDEA 399



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 139/285 (48%), Gaps = 7/285 (2%)

Query: 28  EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
           +A  +  Q +     PT   +  LID   N G  E A     ++V++G       YN+LI
Sbjct: 48  DAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLI 107

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
                  ++  A +M +EM  KG  PD  TY  L+N   + G  ++A S  D M+ +G+ 
Sbjct: 108 RYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLT 167

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P + TY  L+    K  ++  A  LF     +G  P +V +N L+D  C+ G +  A  L
Sbjct: 168 PNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKL 227

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
             +M      PD  TY+TL++G  + G+VEEA ++  +M  RG+  D ++       YN+
Sbjct: 228 FHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVN-------YNS 280

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           L+  L K    D   +L++EM  KG  PD  ++ ++++ +   +K
Sbjct: 281 LLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANK 325



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 131/289 (45%), Gaps = 7/289 (2%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           +   G L+    +L++M   G      T   LI  Y        AF   ++       PT
Sbjct: 5   LASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPT 64

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
              +  LI  L+   +   A+ + K++ +KG   D   YN+LI  + R G    A  +  
Sbjct: 65  VHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFR 124

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM  KG +P   TY  L+  L K  R+ EA   F+  L +G+ P+I  +N L+D     G
Sbjct: 125 EMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVG 184

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            ++ A  L  EM R    P  VTYN L+   C  G+V  AR+L  +M   G  PD     
Sbjct: 185 QLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY--- 241

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
               TY+ L+ GL K+   + A ++ REMV +G+  D   Y SL+  +A
Sbjct: 242 ----TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLA 286



 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 127/272 (46%), Gaps = 35/272 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDSYTY + V+G+ K GR+EEA ++  +M + G+    V YN+L+      GN
Sbjct: 231 MTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGN 290

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK----------MVE------------ 98
           ++  +    EM ++G  P A ++N ++  L    K          MVE            
Sbjct: 291 MDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNI 350

Query: 99  -------------ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                        A  ML+EM E G +P++ TYN LI+     G   +AF++ +EM   G
Sbjct: 351 LIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAG 410

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++TY  L+ +L K+     A +LF+    KG+ PD + +   IDG   +  ++ A 
Sbjct: 411 CRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEAL 470

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            L K+M  +    D+  Y  L+    R G  E
Sbjct: 471 VLFKDMKAVGCPVDKAMYRILIRAAHRAGDTE 502



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD++++ + +  + K  + + A  +  +M E+G  P  ++YN LID Y   G+
Sbjct: 301 MSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGD 360

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EMV+ G +P   TYN LIH L  + ++ EA  +L+EM   G  PD +TYN 
Sbjct: 361 AAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNR 420

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++   + G  ++A  L  +M  KG++P  L+Y   I  L+  +R+ EA  LF++  A G
Sbjct: 421 LMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG 480

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
              D  M+  LI      G+ E    L  E   M V 
Sbjct: 481 CPVDKAMYRILIRAAHRAGDTELEAQLKHESQFMPVE 517


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 163/335 (48%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P   T+GS V+G C   R  EA  +++Q+   G  P  V YNT+ID  C KG 
Sbjct: 140 MMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQ 199

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M K GI P   TYN LI  L        +  +L +M   GI PD IT++ 
Sbjct: 200 VNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSA 259

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y + G   +A   ++EMI + + P ++TY SLI  L     + EA ++    ++KG
Sbjct: 260 LIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V +N LI+G+C    ++    +L  M R  V  D  TYNTL  G C+ GK   A 
Sbjct: 320 FFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAE 379

Query: 241 RLLDQMKRRGIKPDHISFNP---------------TRL-------------TYNALIQGL 272
           ++L +M   G+ PD  +FN                 RL             TYN +I+GL
Sbjct: 380 KVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGL 439

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK  + + A  L   +  KG++PD  TY +++ G+
Sbjct: 440 CKADKVEDAWYLFCSLALKGVSPDVITYITMMIGL 474



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 170/312 (54%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+  D Y++ + +   C+  RL  A   L +M + G  P+ VT+ +L++G+C+      A
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S  D++V  G  P    YN +I  L  + ++  A D+LK M + GI PD +TYN LI  
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITR 228

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
               G    +  +  +M+  GI P ++T+++LI V  K+ +++EA + +   + + + P+
Sbjct: 229 LFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPN 288

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +N+LI+G C +G ++ A  +L  +      P+ VTYNTL++G C+  +V++  ++L 
Sbjct: 289 IVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILC 348

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M R G+  D         TYN L QG C+  +   AE++L  MVS G+ PD  T+  L+
Sbjct: 349 VMSRDGVDGD-------TFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILL 401

Query: 305 EGIASVDKAAES 316
           +G+    K  ++
Sbjct: 402 DGLCDHGKIGKA 413



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 148/288 (51%), Gaps = 7/288 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G++PD  TY S ++ +   G    ++R+L  M   G+ P  +T++ LID Y  +G 
Sbjct: 210 MKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQ 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM+++ + P   TYN LI+ L +   + EA  +L  +  KG  P+++TYN 
Sbjct: 270 LLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNT 329

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+         +   M   G+     TY +L     +  +   A+++    ++ G
Sbjct: 330 LINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCG 389

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN L+DG C +G I +A   L+++ + K     +TYN ++ G C+  KVE+A 
Sbjct: 390 VHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAW 449

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
            L   +  +G+ PD I       TY  ++ GL + +    A EL R+M
Sbjct: 450 YLFCSLALKGVSPDVI-------TYITMMIGLRRKRLWREAHELYRKM 490



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 144/282 (51%), Gaps = 7/282 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +  +A  +   M E+  +P+ V ++ L+         E   S    +   GI     ++ 
Sbjct: 59  KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            LI       ++  A   L +M + G  P  +T+  L+NG+C      +A SL D+++  
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P ++ Y ++I  L ++ ++  A  + ++    G+ PD+V +N+LI     +G    +
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVS 238

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +L +M RM + PD +T++ L+    ++G++ EA++  ++M +R       S NP  +T
Sbjct: 239 ARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQR-------SVNPNIVT 291

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           YN+LI GLC +   D A+++L  +VSKG  P+  TY +LI G
Sbjct: 292 YNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLING 333



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 9/248 (3%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           KGNL  A S R  +         S Y   +   L   K  +A  +  +M E   +P  + 
Sbjct: 24  KGNLVTALSLR--ICNSRAFSGRSDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVD 81

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           ++ L+    +    +   SL   +   GI   + ++T+LI    +  R+  A       +
Sbjct: 82  FSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMM 141

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G  P IV F +L++G C       A SL+ ++  +   P+ V YNT++   C +G+V 
Sbjct: 142 KLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVN 201

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  +L  MK+ GI+PD +       TYN+LI  L  +    ++  +L +M+  GI+PD 
Sbjct: 202 TALDVLKHMKKMGIRPDVV-------TYNSLITRLFHSGTWGVSARILSDMMRMGISPDV 254

Query: 298 NTYFSLIE 305
            T+ +LI+
Sbjct: 255 ITFSALID 262


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 164/312 (52%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  TY + +  +CK GR  EA ++ + M + G  P +  Y TL+ GY  +G L   
Sbjct: 271 GVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQM 330

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV+ G  P    +N+LI        + EA     +M ++G+ P+ +TY  +++ 
Sbjct: 331 HQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDA 390

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR G    A S  D +I +G+ P  + + +LI  L   ++  +A++L    + +G+ P+
Sbjct: 391 LCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPN 450

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + FN L++  C  G + RA ++   M R+ V  D +TY TL+ G C  GKV+EA +LL+
Sbjct: 451 TIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLE 510

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M   G+KP+ +       TYN +I G CKN   + A  L R+M SKG+ P    Y +++
Sbjct: 511 GMVLDGVKPNEV-------TYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTIL 563

Query: 305 EGIASVDKAAES 316
            G+    + A +
Sbjct: 564 HGLFQTRRIAAA 575



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM----KENGLVPTAVTYNTLIDGYC 56
           M + G  P++++Y   + G+C E R ++A  +L  M       G  P  V+Y T+I+G  
Sbjct: 158 MPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLL 217

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
            +G L+ A+   DEM+ QG+ P   TYN L+H      K  EA  + ++M   G+ PD +
Sbjct: 218 REGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVV 277

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN L+   C+ G + +A  + D M+ KG +P    Y +L+   + +  +++  QL +  
Sbjct: 278 TYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVM 337

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +  G  PD  +FN LI  +  +G ++ A     +M +  +HP+ VTY T+M   CR GKV
Sbjct: 338 VRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKV 397

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           ++A    D++   G+ P+ + F         LI GLC   + D AEEL  EM+ +GI P 
Sbjct: 398 DDAMSQFDRLISEGLTPNGVVF-------RTLIHGLCACDKWDKAEELAVEMIGRGICP- 449

Query: 297 DNTYF 301
            NT F
Sbjct: 450 -NTIF 453



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 170/337 (50%), Gaps = 32/337 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD Y +   +    K G ++EA     +M++ GL P  VTY T++D  C  G 
Sbjct: 337 MVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGK 396

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  D ++ +G+ P    +  LIH L    K  +A+++  EM  +GI P++I +N 
Sbjct: 397 VDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNT 456

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+N  C+ G   +A ++ D M+   +Q  ++TYT+LI       ++ EA +L E  +  G
Sbjct: 457 LLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDG 516

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +N +I+G+C NG IE A SL ++M    V+P  V Y+T++HG  +  ++  A+
Sbjct: 517 VKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAK 576

Query: 241 RLLDQMKRRGIKPD------------------------H----ISFNPTRLTYNALIQGL 272
            L   M + GIK                          H    I F+    T+N +I  L
Sbjct: 577 ELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDAL 636

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYF----SLIE 305
            K    D A++L   ++++G+ P+  TY+    SLIE
Sbjct: 637 LKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIE 673



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +PDS  YG+ + G   EG L +  ++L+ M  NG  P    +N LI  Y   G 
Sbjct: 302 MVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGM 361

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M +QG+ P   TY  ++  L    K+ +A      +  +G+ P+ + +  
Sbjct: 362 VDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRT 421

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C C    KA  L  EMI +GI P  + + +L+  L K+  +  A  +F+  +   
Sbjct: 422 LIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVD 481

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D++ +  LIDG+C +G ++ A  LL+ M    V P+EVTYNT+++G C+ G++E+A 
Sbjct: 482 VQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDAC 541

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  QM  +G+       NP  + Y+ ++ GL + +    A+EL   M+  GI     TY
Sbjct: 542 SLFRQMASKGV-------NPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTY 594

Query: 301 FSLIEGIA 308
             +++G+ 
Sbjct: 595 NIILQGLC 602



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           G    + T+   + G+C + R  +A  + L +M   G  P A +YN L+ G C++   + 
Sbjct: 126 GWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQ 185

Query: 64  AFSFRDEMV----KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           A      M+    + G  P   +Y  +I+ LL E ++ +A  +  EM ++G+ P+ ITYN
Sbjct: 186 ALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYN 245

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYC  G  K+A  +  +M   G++P ++TY +L+  L K  R +EA ++F++ + K
Sbjct: 246 CLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKK 305

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD  ++  L+ G+ T G + +   LL  M R    PD   +N L+    + G V+EA
Sbjct: 306 GHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEA 365

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
                +M+++G+ P+ +       TY  ++  LC+  + D A      ++S+G+TP+   
Sbjct: 366 MLAFSKMRQQGLHPNIV-------TYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVV 418

Query: 300 YFSLIEGIASVDK 312
           + +LI G+ + DK
Sbjct: 419 FRTLIHGLCACDK 431



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 122/241 (50%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQ D  TY + + G C +G+++EA+++LE M  +G+ P  VTYNT+I+GYC  G +E A 
Sbjct: 482 VQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDAC 541

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S   +M  +G+ P    Y+ ++H L   R++  A ++   M + GI     TYNI++ G 
Sbjct: 542 SLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGL 601

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+      A  +   +          T+  +I  L K  R  EA  LF + LA+G++P++
Sbjct: 602 CQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNV 661

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +  ++      G +E    L   +++     D    N L+    ++G+V +A   L +
Sbjct: 662 VTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSK 721

Query: 246 M 246
           +
Sbjct: 722 I 722


>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 376

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 163/294 (55%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++ +A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M + G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P+  ++N LI+G      
Sbjct: 120 AEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+       NP
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 GVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 114/222 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+ +A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L   +++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVV 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 162/291 (55%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG ++ A  + + + + GL PTAV++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM  A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +L++EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F ++ ++ G   +   +N+L+H    E ++  A  +   + + G+ P ++++N
Sbjct: 116 YFKLVWGFYEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L + M   G+QP + TY+ LI  L K+++M  A++LF   L  
Sbjct: 176 TLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 133/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE +++ A+ +  +M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD +TY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     L+KEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +++++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 116 YFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 176 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 296 HDLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 165/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD I       TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 371 EMLSVGLKPD-IG------TYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 423

Query: 305 EG 306
            G
Sbjct: 424 NG 425



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 137/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PDI  +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 377 LKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD   Y + ++G+CK G    A R+L  M++    P  V Y TLI   C    
Sbjct: 170 MIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQ 229

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF+   EM+ +GI P   T N L++ L    +    + +L EM +  I+P++I+   
Sbjct: 230 QTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTT 289

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C+ G   +A  + D M   G++P ++TYT+LI     ++ M EA ++F+  + KG
Sbjct: 290 VVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKG 349

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  +N LI+G+C    +++A  L +EM R K+ P+ VTYNTL+HG C  G++++A 
Sbjct: 350 CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 409

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G  PD +       TY  L+  LCKN   D A  LL+ +    + PD   Y
Sbjct: 410 ALFREMVACGQIPDLV-------TYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIY 462

Query: 301 FSLIEGIA 308
             +I+G+ 
Sbjct: 463 TIVIDGMC 470



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 160/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+  T  S V  +C  G  +  + +L +M ++ ++P A++  T++D  C +G 
Sbjct: 240 MITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGM 299

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M + G+ P   TY  LI    +  +M EA  +   M  KG  P+  +YN 
Sbjct: 300 VAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNT 359

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     KA  L +EM  + + P  +TY +LI  L    R+ +A  LF   +A G
Sbjct: 360 LINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACG 419

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+V +  L+D  C N ++++A +LLK ++   + PD   Y  ++ G CR G++E+AR
Sbjct: 420 QIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDAR 479

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+         TYN +  GLCK    D A +L  EM     + D  TY
Sbjct: 480 DLFSNLSSKGLKPN-------VWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTY 532

Query: 301 FSLIEG 306
            ++ +G
Sbjct: 533 NTITQG 538



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 161/312 (51%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ ++ + + G+C EG++ EA  + ++M   G  P  V Y TLI+G C  G+   A
Sbjct: 139 GCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAA 198

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M K    P    Y  LIH L  +R+  +A ++  EM  KGI P+ +T N L+  
Sbjct: 199 IRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYA 258

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G  K   +L +EM+   I P  ++ T+++  L K+  + +A  + +     G+ PD
Sbjct: 259 LCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPD 318

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + ALIDGHC    ++ A  +   M      P+  +YNTL++G C+  ++++A  L +
Sbjct: 319 VVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFE 378

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M R+ + P+ +       TYN LI GLC       A  L REMV+ G  PD  TY  L+
Sbjct: 379 EMCRQKLIPNTV-------TYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILL 431

Query: 305 EGIAS---VDKA 313
           + +     +DKA
Sbjct: 432 DYLCKNCHLDKA 443



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 151/316 (47%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+  + YT    ++  C   R+  A  +L ++ + G  P   ++ TLI G C +G 
Sbjct: 100 MDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQ 159

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+ +G  P    Y  LI+ L        A  +L+ M +    PD + Y  
Sbjct: 160 IGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGT 219

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+     +AF+L  EMI KGI P ++T  SL++ L         + L    +   
Sbjct: 220 LIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSK 279

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ +    ++D  C  G + +A  ++  M +  V PD VTY  L+ G C + +++EA 
Sbjct: 280 IMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAV 339

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M  +G  P+  S       YN LI G CK +  D A  L  EM  + + P+  TY
Sbjct: 340 KVFDMMVHKGCAPNVFS-------YNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTY 392

Query: 301 FSLIEGIASVDKAAES 316
            +LI G+  V +  ++
Sbjct: 393 NTLIHGLCHVGRLQDA 408



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 7/305 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ + K  R      +  +M   G+     T N LI+ +C+   +  AFS 
Sbjct: 72  PSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSV 131

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +++  LI  L +E ++ EA  +  +M  +G  PD + Y  LING C+
Sbjct: 132 LAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCK 191

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+   A  L   M     QP ++ Y +LI  L K  +  +A  LF   + KG+ P+IV 
Sbjct: 192 TGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVT 251

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            N+L+   C  G  +   +LL EM   K+ P+ ++  T++   C++G V +A  ++D M 
Sbjct: 252 CNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMF 311

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G++PD +       TY ALI G C   E D A ++   MV KG  P+  +Y +LI G 
Sbjct: 312 QSGVEPDVV-------TYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGY 364

Query: 308 ASVDK 312
             +++
Sbjct: 365 CKIER 369



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 131/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PD  TY + + G C    ++EA ++ + M   G  P   +YNTLI+GYC    
Sbjct: 310 MFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIER 369

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM +Q ++P   TYN LIH L    ++ +A  + +EM   G +PD +TY I
Sbjct: 370 MDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRI 429

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+  +  KA +L   +    + P +  YT +I  + +   + +A  LF N  +KG
Sbjct: 430 LLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKG 489

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +N +  G C  G ++ A  L  EMD      D  TYNT+  G  R  +   A 
Sbjct: 490 LKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAI 549

Query: 241 RLLDQMKRRGIKPD 254
           +LL++M  RG   D
Sbjct: 550 QLLEEMLARGFSCD 563



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 132/274 (48%), Gaps = 7/274 (2%)

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
           ++ +N     Y +   L+ A S  + M+     P+   +  ++  +   ++      + +
Sbjct: 39  SLLHNRFRSKYLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSR 98

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           +M   GI  +  T N+LIN +C       AFS+  +++  G QP   ++T+LI  L  + 
Sbjct: 99  KMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEG 158

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           ++ EA  LF+  + +G  PD+V++  LI+G C  G+   A  LL+ M++    PD V Y 
Sbjct: 159 QIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYG 218

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           TL+H  C+  +  +A  L  +M  +GI P+ +       T N+L+  LC   E      L
Sbjct: 219 TLIHSLCKDRQQTQAFNLFSEMITKGISPNIV-------TCNSLVYALCNLGEWKHVNTL 271

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           L EMV   I P+  +  ++++ +      A++ +
Sbjct: 272 LNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHD 305



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 35/220 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+ ++Y + ++G CK  R+++A  + E+M    L+P  VTYNTLI G C+ G 
Sbjct: 345 MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 404

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL----MERKMV------------------- 97
           L+ A +   EMV  G +P   TY +L+  L     +++ M                    
Sbjct: 405 LQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTI 464

Query: 98  ------------EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                       +A D+   +  KG+ P+  TYNI+ +G C+ G   +A  L  EM    
Sbjct: 465 VIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENA 524

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
                 TY ++     + N    A QL E  LA+G   D+
Sbjct: 525 CSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDV 564



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY   +  +CK   L++A  +L+ ++ + L P    Y  +IDG C  G 
Sbjct: 415 MVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGE 474

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P   TYN++ H L     + EA  +  EM E     D  TYN 
Sbjct: 475 LEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNT 534

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +  G+ R     +A  L +EM+ +G    + T T L+ +LS
Sbjct: 535 ITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLS 575


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 170/335 (50%), Gaps = 42/335 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ +TY   ++G  K+G   E  +M E M  +G+VP A  YN LI  YCN G 
Sbjct: 219 MDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGM 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF    EM ++GI     TYN+LI  L   +K  EA  ++ ++ + G+ P+ +TYNI
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE------ 174
           LING+C  G    A  L +++   G+ PT++TY +LI   SK   +  A  L +      
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 175 ------------------NFLAK-----------GMLPDIVMFNALIDGHCTNGNIERAF 205
                             N+  K           G++PD+  ++ LI G C NGN++ A 
Sbjct: 399 IARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEAS 458

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
              K +  M + P+ V YNT++HG C++G    A RLL++M   G+ P+  SF  T    
Sbjct: 459 KPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCST---- 514

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              +  LC++++   AE LL +M++ G+ P  + Y
Sbjct: 515 ---MGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 160/317 (50%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS+ V  ++Y++G  ++G C+ G      R+L  ++E GL P  V Y TLIDG C  G+
Sbjct: 150 LKSK-VVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGD 208

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A +   +M + G++P   TY++L++    +    E   M + M   GIVP++  YN 
Sbjct: 209 VMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNC 268

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC  G   KAF +  EM  KGI   ++TY  LI  L +  +  EA +L       G
Sbjct: 269 LISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +N LI+G C  G ++ A  L  ++    + P  VTYNTL+ G  +   +  A 
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M+ R I         +++TY  LI    +    D A E+   M   G+ PD  TY
Sbjct: 389 DLVKEMEERCIA-------RSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTY 441

Query: 301 FSLIEGIASVDKAAESS 317
             LI G        E+S
Sbjct: 442 SVLIHGXCVNGNMKEAS 458



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 159/351 (45%), Gaps = 50/351 (14%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+   Y + + G CK G +  A  +  +M   GLVP   TY+ L++G+  +G     
Sbjct: 188 GLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREG 247

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   + M + GI+P A  YN LI E   +  + +A  +  EM EKGI    +TYNILI G
Sbjct: 248 FQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 125 YCRCGNAKKAFSLHDEMIHK----GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            CR     K F    +++HK    G+ P ++TY  LI       +M  A +LF    + G
Sbjct: 308 LCR----GKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD-----RMKVH------------------ 217
           + P +V +N LI G+    N+  A  L+KEM+     R KV                   
Sbjct: 364 LSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKAC 423

Query: 218 ------------PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                       PD  TY+ L+HG C  G ++EA +    +    ++P+ +        Y
Sbjct: 424 EMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSV-------IY 476

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N +I G CK      A  LL EMV  G+ P+  ++ S +  +   +K  E+
Sbjct: 477 NTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEA 527



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 80/318 (25%)

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT---------------- 117
           QG+  T+ + + +++ LL    + +A  ++  +   G +P S+                 
Sbjct: 32  QGLHHTSHSISFILNHLLSSGMLPQAQSLILRL-ISGRIPSSLMLQLTQAHFTSCSTYTP 90

Query: 118 -YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            Y+ ++N Y    +  +A +    MIH+G  P   T+ +L+ +L + N   +A  +F   
Sbjct: 91  LYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVL 150

Query: 177 LAK----------------------------------GMLPDIVMFNALIDGHCTNGNIE 202
            +K                                  G+ P++V++  LIDG C NG++ 
Sbjct: 151 KSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVM 210

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT- 261
            A +L  +MDR+ + P++ TY+ LM+G  +QG   E  ++ + M R GI P+  ++N   
Sbjct: 211 LAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLI 270

Query: 262 ---------------------------RLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
                                       +TYN LI GLC+ ++   A +L+ ++   G++
Sbjct: 271 SEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLS 330

Query: 295 PDDNTYFSLIEGIASVDK 312
           P+  TY  LI G   V K
Sbjct: 331 PNIVTYNILINGFCDVGK 348



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 66/121 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD YTY   + G C  G ++EAS+  + + E  L P +V YNT+I GYC +G+
Sbjct: 429 MEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EMV  G++P  +++   +  L  + K  EA+ +L +M   G+ P    Y +
Sbjct: 489 SYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKM 548

Query: 121 L 121
           +
Sbjct: 549 V 549


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 159/295 (53%), Gaps = 10/295 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+ D+ TY S V+G+C  GR  +A+R++  M    +VP  +T+  +ID +  +G 
Sbjct: 200 MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGK 259

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EM ++ + P   TYN LI+ L M  ++ EA  ML  M  KG +PD +TYN 
Sbjct: 260 FSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNT 319

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +   L  EM  +G+    +TY ++I    +  R   A ++F    ++ 
Sbjct: 320 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR- 378

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  ++ L+ G C N  +E+A  L + M + ++  D  TYN ++HG C+ G VE+A 
Sbjct: 379 --PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 436

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            L   +  +G+KPD +S       Y  +I G C+ ++ D ++ L R+M   G+ P
Sbjct: 437 DLFRSLSCKGLKPDVVS-------YTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 167/340 (49%), Gaps = 39/340 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  T  S ++G C+  R+ +A  ++ +M+E G  P  V YNT+IDG C  G 
Sbjct: 130 MMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGL 189

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M + G+   A TYN L+  L    +  +A  ++++M  + IVP+ IT+  
Sbjct: 190 VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 249

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ + + G   +A  L++EM  + + P + TY SLI  L    R+ EA Q+ +  + KG
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM----------------------------- 211
            LPD+V +N LI+G C +  ++    L +EM                             
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369

Query: 212 ---DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
               RM   P+  TY+ L++G C   +VE+A  L + M++  I+ D         TYN +
Sbjct: 370 EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDIT-------TYNIV 422

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           I G+CK    + A +L R +  KG+ PD  +Y ++I G  
Sbjct: 423 IHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFC 462



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 152/299 (50%), Gaps = 7/299 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K    +    +   M+  G+     +YN +I+  C      +A S 
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T + LI+      ++ +A D++ +M E G  PD + YN +I+G C+
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  L D M   G++   +TY SL+  L    R  +A +L  + + + ++P+++ 
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F A+ID     G    A  L +EM R  V PD  TYN+L++G C  G+V+EA+++LD M 
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +G  PD +       TYN LI G CK++  D   +L REM  +G+  D  TY ++I+G
Sbjct: 307 TKGCLPDVV-------TYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 358



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 160/308 (51%), Gaps = 10/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D Y+Y   ++ +C+  R   A  ++ +M + G  P  VT ++LI+G+C    
Sbjct: 95  MEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 154

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M + G  P    YN +I        + +A ++   M   G+  D++TYN 
Sbjct: 155 VFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNS 214

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  L  +M+ + I P ++T+T++I V  K+ +  EA +L+E    + 
Sbjct: 215 LVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC 274

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N+LI+G C +G ++ A  +L  M      PD VTYNTL++G C+  +V+E  
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 334

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M +RG+  D I       TYN +IQG  +    D A+E+   M S+   P+  TY
Sbjct: 335 KLFREMAQRGLVGDTI-------TYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTY 384

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 385 SILLYGLC 392



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 135/286 (47%), Gaps = 28/286 (9%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           NLE       +M++   +P+   ++ ++ ++   +       +   M   GI  D  +YN
Sbjct: 49  NLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYN 108

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+IN  CRC     A S+  +M+  G +P ++T +SLI    + NR+ +A  L       
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD+V++N +IDG C  G +  A  L   M+R  V  D VTYN+L+ G C  G+  +A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
            RL+  M  R I P+ I+F                            +P   TYN+LI G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           LC +   D A+++L  MV+KG  PD  TY +LI G     +  E +
Sbjct: 289 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 334


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 161/332 (48%), Gaps = 28/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  V PD  T+ + + G  +EG +E A R+  +M E G  PT VT N LI+GYC  G 
Sbjct: 221 MSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGR 280

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  +  + +  G  P   TYN  +H L     +  A  ++  M ++G  PD  TYN 
Sbjct: 281 VEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNT 340

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN   + G   +A  + ++M+ +G  P   T+ +LI  L  QNR+ EA  L      KG
Sbjct: 341 VINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKG 400

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN LI+  C  G+      L +EM      PDEVTYN L+   C  GK+  A 
Sbjct: 401 LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNAL 460

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL +M+  G     +++N                             + +T+N LI GL
Sbjct: 461 DLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGL 520

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           CK +  D A EL+ +MV +G+ P + TY S++
Sbjct: 521 CKAKRIDDATELIEQMVKEGLQPSNITYNSIL 552



 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 165/331 (49%), Gaps = 28/331 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY +FV  +C+ G +  A ++++ M + G  P   TYNT+I+     G L+ A
Sbjct: 295 GFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEA 354

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++MV +G +P  +T+N LI  L  + ++ EA D+ +E+  KG+ PD  T+NILIN 
Sbjct: 355 KGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINA 414

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+      L +EM   G  P  +TY  LI  L    +++ A  L +   + G    
Sbjct: 415 LCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRS 474

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N +ID  C    IE A  +  +MD   +    VT+NTL+ G C+  ++++A  L++
Sbjct: 475 TVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIE 534

Query: 245 QMKRRGIKPDHISFNPTR----------------------------LTYNALIQGLCKNQ 276
           QM + G++P +I++N                               +TY  LI GLCK  
Sbjct: 535 QMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAG 594

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
              +A +LLR M  KGI P    Y  +I+ +
Sbjct: 595 RTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 625



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 173/337 (51%), Gaps = 31/337 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD+ T+ + +  +C + RLEEA  +  ++   GL P   T+N LI+  C  G+
Sbjct: 361 MVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGD 420

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +     +EM   G  P   TYN+LI  L    K+V A D+LKEM   G    ++TYN 
Sbjct: 421 PHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNT 480

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+    ++A  + D+M   GI  + +T+ +LI  L K  R+ +A +L E  + +G
Sbjct: 481 IIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG 540

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  + +N+++  +C  G++++A  +L+ M       D VTY TL++G C+ G+ + A 
Sbjct: 541 LQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVAL 600

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
           +LL  M+ +GI+P   ++NP                              LTY  + +GL
Sbjct: 601 KLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGL 660

Query: 273 CKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGI 307
           C+   G + E  + L EMV+KG  P+ +++  L EG+
Sbjct: 661 CRGG-GPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 696



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 171/350 (48%), Gaps = 39/350 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+QPD  T  + +  +C+  ++  A  MLE+M  + + P   T+ TL+ G+  +G+
Sbjct: 186 MTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGS 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML----KEMGEKGIVPDSI 116
           +E A   + +M++ G  PT  T N+LI+      KM   +D L    KE+ + G  PD +
Sbjct: 246 IEAALRVKTKMMETGCSPTRVTVNVLINGYC---KMGRVEDALGYIQKEIAD-GFEPDQV 301

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN  ++  C+ G+   A  + D M+ +G  P + TY ++I  LSK   + EA  +    
Sbjct: 302 TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 361

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           + +G LPD   FN LI   C+   +E A  L +E+    + PD  T+N L++  C+ G  
Sbjct: 362 VDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 421

Query: 237 EEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNAL 268
               RL ++MK  G  PD +++N                             + +TYN +
Sbjct: 422 HLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTI 481

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           I  LCK    + AEE+  +M + GI+    T+ +LI+G+     +D A E
Sbjct: 482 IDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATE 531



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 152/312 (48%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + GVQ D+  Y   ++ + +  R++    +  +M + G+ P  VT NTLI   C    
Sbjct: 151 LNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQ 210

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM    + P  +T+  L+   + E  +  A  +  +M E G  P  +T N+
Sbjct: 211 VRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNV 270

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G  + A     + I  G +P  +TY + +  L +   +  A ++ +  L +G
Sbjct: 271 LINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEG 330

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  +N +I+    NG ++ A  ++ +M      PD  T+NTL+   C Q ++EEA 
Sbjct: 331 HDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEAL 390

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  ++  +G+ PD         T+N LI  LCK  +  L   L  EM S G  PD+ TY
Sbjct: 391 DLARELTVKGLSPD-------VYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTY 443

Query: 301 FSLIEGIASVDK 312
             LI+ + S+ K
Sbjct: 444 NILIDHLCSMGK 455



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G++P    Y   +  + +   L +A  +  +M E G  P A+TY  +  G C  G 
Sbjct: 606 MRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGG 665

Query: 61  -LEMAFSFRDEMVKQGIMPTASTYNLLIHELL---MERKMVEADDMLKE 105
            ++ AF F  EMV +G MP  S++ +L   LL   M+  ++ A +++ E
Sbjct: 666 PIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIELIIE 714


>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 376

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 163/294 (55%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++ +A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M + G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P+  ++N LI+G      
Sbjct: 120 AQQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+       NP
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 GVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 114/222 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+ +A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+   +     
Sbjct: 68  GLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 168/337 (49%), Gaps = 42/337 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P+ + Y + +  +CK  +  EA  + ++M + GL P  VTY+ LID +C +G L+ A
Sbjct: 362 GVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTA 421

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            SF  EMV  G+  +   YN LI+       +  A+  + EM  K + P  +TY  L+ G
Sbjct: 422 LSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGG 481

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G   KA  L+ EM  KGI P++ T+T+L+  L +   + +A +LF       + P+
Sbjct: 482 YCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPN 541

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD------------------------- 219
            V +N +I+G+C  G++ +AF  LKEM    + PD                         
Sbjct: 542 RVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601

Query: 220 ----------EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                     E+ Y  L+HG CR+GK+EEA  +  +M +RG+  D +        Y  LI
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVC-------YGVLI 654

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            G  K+++  L   LL+EM  +G+ PDD  Y S+I+ 
Sbjct: 655 DGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDA 691



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  + ++PD  TY + V G+CK    E    M+++M      P+    ++L++G   +G 
Sbjct: 288 LAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGK 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A +    +V  G+ P    YN LI  L   RK  EA+ +   MG+ G+ P+ +TY+I
Sbjct: 348 IEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSI 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +CR G    A S   EM+  G++ ++  Y SLI    K   +  A+      + K 
Sbjct: 408 LIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKK 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V + +L+ G+C+ G I +A  L  EM    + P   T+ TL+ G  R G + +A 
Sbjct: 468 LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAV 527

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
           +L ++M    +KP+       R+TYN +I+G C  +EGD+++  E L+EM  KGI PD  
Sbjct: 528 KLFNEMAEWNVKPN-------RVTYNVMIEGYC--EEGDMSKAFEFLKEMTEKGIVPDTY 578

Query: 299 TYFSLIEGIASVDKAAES 316
           +Y  LI G+    +A+E+
Sbjct: 579 SYRPLIHGLCLTGQASEA 596



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 179/391 (45%), Gaps = 80/391 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P  YT+ + +SG+ + G + +A ++  +M E  + P  VTYN +I+GYC +G+
Sbjct: 498 MTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGD 557

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------------------------- 92
           +  AF F  EM ++GI+P   +Y  LIH L +                            
Sbjct: 558 MSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTG 617

Query: 93  -------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E K+ EA  + +EM ++G+  D + Y +LI+G  +  + K  F L  EM  +G
Sbjct: 618 LLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRG 677

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P  + YTS+I   SK     EA  +++  + +G +P+ V + A+I+G C  G +  A 
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737

Query: 206 SLLKEMDRMKVHPDEVTY-----------------------------------NTLMHGR 230
            L  +M  +   P++VTY                                   N L+ G 
Sbjct: 738 VLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGF 797

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           CRQG++EEA  L+ +M   G+ PD I       TY  +I  LC+  +   A EL   M  
Sbjct: 798 CRQGRIEEASELITRMIGDGVSPDCI-------TYTTMINELCRRNDVKKAIELWNSMTE 850

Query: 291 KGITPDDNTYFSLIEGI---ASVDKAAESSN 318
           KGI PD   Y +LI G      + KA E  N
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRN 881



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 153/330 (46%), Gaps = 32/330 (9%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            P      S V G+ K G++EEA  +++++ + G+ P    YN LID  C       A  
Sbjct: 329 SPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAEL 388

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D M K G+ P   TY++LI       K+  A   L EM + G+      YN LING+C
Sbjct: 389 LFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHC 448

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G+   A     EMI+K ++PT++TYTSL+     + ++ +A +L+     KG+ P I 
Sbjct: 449 KFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIY 508

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  L+ G    G I  A  L  EM    V P+ VTYN ++ G C +G + +A   L +M
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568

Query: 247 KRRGIKPDHISFNP----------------------------TRLTYNALIQGLCKNQEG 278
             +GI PD  S+ P                              + Y  L+ G C+  EG
Sbjct: 569 TEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR--EG 626

Query: 279 DLAEEL--LREMVSKGITPDDNTYFSLIEG 306
            L E L   +EMV +G+  D   Y  LI+G
Sbjct: 627 KLEEALSVCQEMVQRGVDLDLVCYGVLIDG 656



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 165/324 (50%), Gaps = 13/324 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ ++P   TY S + G C +G++ +A R+  +M   G+ P+  T+ TL+ G    G 
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGL 522

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM +  + P   TYN++I     E  M +A + LKEM EKGIVPD+ +Y  
Sbjct: 523 IRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRP 582

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C  G A +A    D + HKG  +   + YT L+    ++ ++ EA  + +  + +
Sbjct: 583 LIHGLCLTGQASEAKVFVDGL-HKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQR 641

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D+V +  LIDG   + + +  F LLKEM    + PD+V Y +++  + + G  +EA
Sbjct: 642 GVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             + D M   G  P+ +       TY A+I GLCK    + AE L  +M      P+  T
Sbjct: 702 FGIWDLMINEGCVPNEV-------TYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVT 754

Query: 300 YFS----LIEGIASVDKAAESSNS 319
           Y      L +G   + KA E  N+
Sbjct: 755 YGCFLDILTKGEVDMQKAVELHNA 778



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 7/287 (2%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y   + G C+EG+LEEA  + ++M + G+    V Y  LIDG     + ++ F    EM 
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
            +G+ P    Y  +I          EA  +   M  +G VP+ +TY  +ING C+ G   
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A  L  +M      P  +TY   + +L+K    ++      N + KG+L +   +N LI
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLI 794

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
            G C  G IE A  L+  M    V PD +TY T+++  CR+  V++A  L + M  +GI+
Sbjct: 795 RGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIR 854

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           PD       R+ YN LI G C   E   A EL  EM+ +G+ P++ T
Sbjct: 855 PD-------RVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 7/305 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  T  + + G+ K      A  +   M   G+ P    Y  +I   C   +L  A   
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              M   G       YN+LI  L  ++K+ EA  + K++  K + PD +TY  L+ G C+
Sbjct: 250 IAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCK 309

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
               +    + DEM+     P+    +SL+  L K+ ++ EA  L +  +  G+ P++ +
Sbjct: 310 VQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFV 369

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +NALID  C       A  L   M ++ + P++VTY+ L+   CR+GK++ A   L +M 
Sbjct: 370 YNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMV 429

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G+K   +S  P    YN+LI G CK  +   AE  + EM++K + P   TY SL+ G 
Sbjct: 430 DTGLK---LSVYP----YNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGY 482

Query: 308 ASVDK 312
            S  K
Sbjct: 483 CSKGK 487



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 112/225 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++PD   Y S +    K G  +EA  + + M   G VP  VTY  +I+G C  G 
Sbjct: 673 MHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGF 732

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M     +P   TY   +  L      ++    L     KG++ ++ TYN+
Sbjct: 733 VNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNM 792

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+CR G  ++A  L   MI  G+ P  +TYT++I  L ++N + +A +L+ +   KG
Sbjct: 793 LIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKG 852

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           + PD V +N LI G C  G + +A  L  EM R  + P+  T  T
Sbjct: 853 IRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 8/259 (3%)

Query: 48  YNTLIDGYC-NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
           ++ LI  Y  ++  L+    F+  + K  ++P   T + L+H L+  R    A ++  +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
              GI PD   Y  +I   C   +  +A  +   M   G    ++ Y  LI  L K+ ++
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            EA  + ++   K + PD+V +  L+ G C     E    ++ EM  ++  P E   ++L
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSL 338

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           + G  ++GK+EEA  L+ ++   G+ P+          YNALI  LCK ++   AE L  
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPN-------LFVYNALIDSLCKGRKFHEAELLFD 391

Query: 287 EMVSKGITPDDNTYFSLIE 305
            M   G+ P+D TY  LI+
Sbjct: 392 RMGKIGLRPNDVTYSILID 410



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 8/212 (3%)

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRM 166
           EK  +  S ++++LI  Y R         +   MI K  + P + T ++L+  L K    
Sbjct: 149 EKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHF 208

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             A +LF + ++ G+ PD+ ++  +I   C   ++ RA  ++  M+      + V YN L
Sbjct: 209 GLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVL 268

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           + G C++ KV EA  +   +  + +KPD +       TY  L+ GLCK QE ++  E++ 
Sbjct: 269 IDGLCKKQKVWEAVGIKKDLAGKDLKPDVV-------TYCTLVYGLCKVQEFEIGLEMMD 321

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           EM+    +P +    SL+EG+    K  E+ N
Sbjct: 322 EMLCLRFSPSEAAVSSLVEGLRKRGKIEEALN 353


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 170/306 (55%), Gaps = 9/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+ D  TYG+ + G+C    +++A  ++ +M E+G+ P  V Y++L+ GYC  G 
Sbjct: 141 MRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGR 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       EM ++GI P    Y  LI  L    K  +A  ++  M  +G+ P+ +TYN+
Sbjct: 201 WEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNV 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL-AK 179
           LIN  C+ G+ K+A  +  +M  KG+ P ++TY +LI  LS    M EA  L E  +  K
Sbjct: 261 LINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGK 320

Query: 180 GML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            ++ P++V FN++I G C  G + +AF +   M+      + VTYN L+ G  R  KV +
Sbjct: 321 NIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRK 380

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L+D+M   G++PD  SF     TY+ LI+G CK  + D AE+LL  M  +GI P+  
Sbjct: 381 AMELMDEMTSLGLEPD--SF-----TYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELF 433

Query: 299 TYFSLI 304
            Y  L+
Sbjct: 434 HYIPLL 439



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 168/337 (49%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+   Y S + G CK GR E+  ++  +M E G+ P  V Y  LID  C  G 
Sbjct: 176 MCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGK 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D MV++G+ P   TYN+LI+ +  E  + EA  +LK+M EKG+ PD +TYN 
Sbjct: 236 AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNT 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           LI G        +A  L +EM+     ++P ++T+ S+I  L    RM +A Q+      
Sbjct: 296 LIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEE 355

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G + ++V +N LI G      + +A  L+ EM  + + PD  TY+ L+ G C+  +V+ 
Sbjct: 356 TGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDR 415

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLT---------------------------YNALIQG 271
           A  LL  M+ RGI+P+   + P  +                            Y+ +I G
Sbjct: 416 AEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHG 475

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            CK  +   A+ELL+ +V +G+TPD  TY  +I   A
Sbjct: 476 ACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFA 512



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 166/311 (53%), Gaps = 10/311 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG++P+  TY   ++ MCKEG ++EA  +L++M E G+ P  VTYNTLI G  +   
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLE 305

Query: 61  LEMAFSFRDEMV--KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           ++ A    +EMV  K  + P   T+N +I  L    +M +A  +   M E G + + +TY
Sbjct: 306 MDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTY 365

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N+LI G  R    +KA  L DEM   G++P   TY+ LI    K  ++  A+ L      
Sbjct: 366 NLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD 425

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P++  +  L+   C  G +ERA +L  EMD      D V Y+T++HG C+ G ++ 
Sbjct: 426 RGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKT 484

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A+ LL  +   G+ PD +       TY+ +I    K+ + + A  +L++M + G  PD  
Sbjct: 485 AKELLKSIVDEGLTPDAV-------TYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVA 537

Query: 299 TYFSLIEGIAS 309
            + SLI+G ++
Sbjct: 538 VFDSLIQGYST 548



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 164/312 (52%), Gaps = 12/312 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P++ +Y   +  +C +   ++A  +L  M+  G+    VTY TLI G C+   ++ A  
Sbjct: 112 RPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EM + GI P    Y+ L+       +  +   +  EM EKGI PD + Y  LI+  C
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G AKKA  + D M+ +G++P ++TY  LI  + K+  + EA  + +    KG+ PD+V
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV 291

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMK--VHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +N LI G      ++ A  LL+EM R K  V P+ VT+N+++ G C  G++ +A ++  
Sbjct: 292 TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRA 351

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M+  G   + +       TYN LI GL +  +   A EL+ EM S G+ PD  TY  LI
Sbjct: 352 MMEETGCMVNLV-------TYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILI 404

Query: 305 EG---IASVDKA 313
           +G   +  VD+A
Sbjct: 405 KGFCKMWQVDRA 416



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 10/305 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M  +GV PD  TY + + G+     ++EA  +LE+M   +N + P  VT+N++I G C+ 
Sbjct: 281 MSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDI 340

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +  AF  R  M + G M    TYNLLI  LL   K+ +A +++ EM   G+ PDS TY
Sbjct: 341 GRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTY 400

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +ILI G+C+     +A  L   M  +GI+P +  Y  L+  + +Q  M  A  LF N + 
Sbjct: 401 SILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLF-NEMD 459

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
                D+V ++ +I G C  G+++ A  LLK +    + PD VTY+ +++   + G +E 
Sbjct: 460 NNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEA 519

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  +L QM   G  PD   F       ++LIQG     E +   EL+REM++K I  D  
Sbjct: 520 ANGVLKQMTASGFLPDVAVF-------DSLIQGYSTKGEINKVLELIREMITKNIALDSK 572

Query: 299 TYFSL 303
              +L
Sbjct: 573 IISTL 577



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 152/292 (52%), Gaps = 15/292 (5%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ---GIMPTAST 82
           L EA+ +L+ +     V  AV+YNT++   C +G+ + A +    M  +      P A +
Sbjct: 61  LGEATSLLDALPS---VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y +L+  L  +R   +A  +L+ M   G+  D +TY  LI G C      KA  L  EM 
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             GI+P ++ Y+SL+    K  R  +  ++F     KG+ PD+VM+  LID  C  G  +
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           +A  ++  M R  + P+ VTYN L++  C++G V+EA  +L +M  +G+ PD +      
Sbjct: 238 KAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVV------ 291

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKG--ITPDDNTYFSLIEGIASVDK 312
            TYN LI+GL    E D A  LL EMV     + P+  T+ S+I+G+  + +
Sbjct: 292 -TYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGR 342



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 45/208 (21%)

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMI---HKGIQPTMLTYTSLIFVLSKQNRMIE 168
           V D+++YN ++   CR G+  +A +L   M    H   +P  ++YT L+       R + 
Sbjct: 74  VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLM-------RALC 126

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           AD+L                             ++A  LL+ M    V  D VTY TL+ 
Sbjct: 127 ADRL----------------------------ADQAVGLLRSMRSAGVRADVVTYGTLIR 158

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           G C   +V++A  L+ +M   GI+P+ +        Y++L+QG CK+   +   ++  EM
Sbjct: 159 GLCDAAEVDKAVELMGEMCESGIEPNVV-------VYSSLLQGYCKSGRWEDVGKVFVEM 211

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAES 316
             KGI PD   Y  LI+ +  V KA ++
Sbjct: 212 SEKGIEPDVVMYTGLIDSLCKVGKAKKA 239



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 10/115 (8%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A SLL  +  ++   D V+YNT++   CR+G  + A  LL  M    ++P H +  P  +
Sbjct: 64  ATSLLDALPSVR---DAVSYNTVLTALCRRGHHDRAGALLRAMS---LEP-HPACRPNAV 116

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
           +Y  L++ LC ++  D A  LLR M S G+  D  TY +LI G+   A VDKA E
Sbjct: 117 SYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 159/295 (53%), Gaps = 10/295 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+ D+ TY S V+G+C  GR  +A+R++  M    +VP  +T+  +ID +  +G 
Sbjct: 141 MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGK 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EM ++ + P   TYN LI+ L M  ++ EA  ML  M  KG +PD +TYN 
Sbjct: 201 FSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNT 260

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +   L  EM  +G+    +TY ++I    +  R   A ++F    ++ 
Sbjct: 261 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR- 319

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  ++ L+ G C N  +E+A  L + M + ++  D  TYN ++HG C+ G VE+A 
Sbjct: 320 --PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 377

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            L   +  +G+KPD +S       Y  +I G C+ ++ D ++ L R+M   G+ P
Sbjct: 378 DLFRSLSCKGLKPDVVS-------YTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 167/340 (49%), Gaps = 39/340 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  T  S ++G C+  R+ +A  ++ +M+E G  P  V YNT+IDG C  G 
Sbjct: 71  MMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGL 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M + G+   A TYN L+  L    +  +A  ++++M  + IVP+ IT+  
Sbjct: 131 VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 190

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ + + G   +A  L++EM  + + P + TY SLI  L    R+ EA Q+ +  + KG
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 250

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM----------------------------- 211
            LPD+V +N LI+G C +  ++    L +EM                             
Sbjct: 251 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 310

Query: 212 ---DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
               RM   P+  TY+ L++G C   +VE+A  L + M++  I+ D         TYN +
Sbjct: 311 EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDIT-------TYNIV 363

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           I G+CK    + A +L R +  KG+ PD  +Y ++I G  
Sbjct: 364 IHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFC 403



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 152/299 (50%), Gaps = 7/299 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K    +    +   M+  G+     +YN +I+  C      +A S 
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T + LI+      ++ +A D++ +M E G  PD + YN +I+G C+
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  L D M   G++   +TY SL+  L    R  +A +L  + + + ++P+++ 
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 187

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F A+ID     G    A  L +EM R  V PD  TYN+L++G C  G+V+EA+++LD M 
Sbjct: 188 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 247

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +G  PD +       TYN LI G CK++  D   +L REM  +G+  D  TY ++I+G
Sbjct: 248 TKGCLPDVV-------TYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 299



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 160/308 (51%), Gaps = 10/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D Y+Y   ++ +C+  R   A  ++ +M + G  P  VT ++LI+G+C    
Sbjct: 36  MEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M + G  P    YN +I        + +A ++   M   G+  D++TYN 
Sbjct: 96  VFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNS 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  L  +M+ + I P ++T+T++I V  K+ +  EA +L+E    + 
Sbjct: 156 LVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC 215

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N+LI+G C +G ++ A  +L  M      PD VTYNTL++G C+  +V+E  
Sbjct: 216 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 275

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M +RG+  D I       TYN +IQG  +    D A+E+   M S+   P+  TY
Sbjct: 276 KLFREMAQRGLVGDTI-------TYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTY 325

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 326 SILLYGLC 333



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 131/275 (47%), Gaps = 28/275 (10%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M++   +P+   ++ ++ ++   +       +   M   GI  D  +YNI+IN  CRC  
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 60

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A S+  +M+  G +P ++T +SLI    + NR+ +A  L       G  PD+V++N 
Sbjct: 61  FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNT 120

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +IDG C  G +  A  L   M+R  V  D VTYN+L+ G C  G+  +A RL+  M  R 
Sbjct: 121 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 180

Query: 251 IKPDHISF----------------------------NPTRLTYNALIQGLCKNQEGDLAE 282
           I P+ I+F                            +P   TYN+LI GLC +   D A+
Sbjct: 181 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 240

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           ++L  MV+KG  PD  TY +LI G     +  E +
Sbjct: 241 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 275


>gi|255661034|gb|ACU25686.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 376

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 159/295 (53%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS T+   + G CK G + ++ R+LE  +E G V  A  Y+ +I+G C +  
Sbjct: 85  MKKSGFVEDSTTHAILIDGFCKNGYINKSLRVLEIAEEKGGVLNAFAYSAMINGLCREAK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN+LI+  +   K  +A  + +EMG     P  +TYN 
Sbjct: 145 LDKAASVLNGMIKNGSKPNAHVYNILINGFVGASKFYDAIRVFQEMGSTDCSPTIVTYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG +P ++TY+ LI  L + +++  A QL+   ++KG
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLIKGLCQGHKVEMAIQLWNQVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+ M N LI G C+ G  + A  L  +M+R    P+ VT+NTLM G  + G +  A 
Sbjct: 265 LKPDVQMHNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD +S+N T       ++GLC       A   L + ++  I P
Sbjct: 325 VIWARILRNGLQPDIVSYNIT-------LKGLCSCNRISFANLFLXDALANAIAP 372



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C    ++ A R+ ++M E+ + P AV YN +++GY   G ++  F   + M  +G     
Sbjct: 1   CDSEDIDGAERVYKEMVESKMSPDAVVYNAMLNGYFRVGRIKDCFELWELMGTEGGQNVI 60

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S +N+++  L    ++ +A  + + M + G V DS T+ ILI+G+C+ G   K+  + + 
Sbjct: 61  S-FNIMMRGLFNNGEVDKAISIWELMKKSGFVEDSTTHAILIDGFCKNGYINKSLRVLEI 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L ++ ++ +A  +    +  G  P+  ++N LI+G      
Sbjct: 120 AEEKGGVLNAFAYSAMINGLCREAKLDKAASVLNGMIKNGSKPNAHVYNILINGFVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
              A  + +EM      P  VTYNTL++G C+  +  EA  L+ +M  +G K       P
Sbjct: 180 FYDAIRVFQEMGSTDCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWK-------P 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ LI+GLC+  + ++A +L  +++SKG+ PD   +  LI G+ SV K
Sbjct: 233 CVITYSLLIKGLCQGHKVEMAIQLWNQVISKGLKPDVQMHNILIHGLCSVGK 284



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 150/301 (49%), Gaps = 8/301 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + PD+  Y + ++G  + GR+++   + E M   G     +++N ++ G  N G ++ A 
Sbjct: 21  MSPDAVVYNAMLNGYFRVGRIKDCFELWELMGTEG-GQNVISFNIMMRGLFNNGEVDKAI 79

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S  + M K G +  ++T+ +LI        + ++  +L+   EKG V ++  Y+ +ING 
Sbjct: 80  SIWELMKKSGFVEDSTTHAILIDGFCKNGYINKSLRVLEIAEEKGGVLNAFAYSAMINGL 139

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR     KA S+ + MI  G +P    Y  LI      ++  +A ++F+   +    P I
Sbjct: 140 CREAKLDKAASVLNGMIKNGSKPNAHVYNILINGFVGASKFYDAIRVFQEMGSTDCSPTI 199

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N LI+G C       A+ L+KEM      P  +TY+ L+ G C+  KVE A +L +Q
Sbjct: 200 VTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLIKGLCQGHKVEMAIQLWNQ 259

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +  +G+KPD          +N LI GLC   +  LA  L  +M      P+  T+ +L+E
Sbjct: 260 VISKGLKPD-------VQMHNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLME 312

Query: 306 G 306
           G
Sbjct: 313 G 313



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 107/222 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y   ++G     +  +A R+ ++M      PT VTYNTLI+G C    
Sbjct: 155 MIKNGSKPNAHVYNILINGFVGASKFYDAIRVFQEMGSTDCSPTIVTYNTLINGLCKGER 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G  P   TY+LLI  L    K+  A  +  ++  KG+ PD   +NI
Sbjct: 215 FAEAYDLVKEMLEKGWKPCVITYSLLIKGLCQGHKVEMAIQLWNQVISKGLKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A  L+ +M      P ++T+ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDIV +N  + G C+   I  A   L +     + P  +T
Sbjct: 335 LQPDIVSYNITLKGLCSCNRISFANLFLXDALANAIAPTXIT 376



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 29/243 (11%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KEM E  + PD++ YN ++NGY R G  K  F L + M  +G Q  ++++  ++ 
Sbjct: 9   AERVYKEMVESKMSPDAVVYNAMLNGYFRVGRIKDCFELWELMGTEGGQ-NVISFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L     + +A  ++E     G + D      LIDG C NG I ++  +L+  +      
Sbjct: 68  GLFNNGEVDKAISIWELMKKSGFVEDSTTHAILIDGFCKNGYINKSLRVLEIAEEKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------------- 259
           +   Y+ +++G CR+ K+++A  +L+ M + G KP+   +N                   
Sbjct: 128 NAFAYSAMINGLCREAKLDKAASVLNGMIKNGSKPNAHVYNILINGFVGASKFYDAIRVF 187

Query: 260 ---------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                    PT +TYN LI GLCK +    A +L++EM+ KG  P   TY  LI+G+   
Sbjct: 188 QEMGSTDCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLIKGLCQG 247

Query: 311 DKA 313
            K 
Sbjct: 248 HKV 250



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A+++++  +   M PD V++NA+++G+   G I+  F L + M   +   + +++N +M 
Sbjct: 9   AERVYKEMVESKMSPDAVVYNAMLNGYFRVGRIKDCFELWELMGT-EGGQNVISFNIMMR 67

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           G    G+V++A  + + MK+ G   D         T+  LI G CKN   + +  +L   
Sbjct: 68  GLFNNGEVDKAISIWELMKKSGFVEDST-------THAILIDGFCKNGYINKSLRVLEIA 120

Query: 289 VSKGITPDDNTYFSLIEGI---ASVDKAAESSN 318
             KG   +   Y ++I G+   A +DKAA   N
Sbjct: 121 EEKGGVLNAFAYSAMINGLCREAKLDKAASVLN 153


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ + +  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +   L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K+M +  +  DEV Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLNVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V+F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++ 
Sbjct: 242 GLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQV 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + D A E  ++M+ + I  D+  
Sbjct: 302 HHLIDEMSMKGLKPD-------KITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 135/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  V + TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +   ++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF    +MI + I+   + YT+LI  L ++ R ++A+++    L  G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 197

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 232


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 166/312 (53%), Gaps = 7/312 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M + G  PD  T+ + ++G+C EG + +A   L +     L P  ++Y  LI G+C +G 
Sbjct: 1278 MFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGE 1337

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L +A     EM+ +G  P   T+  LIH L++  K+ EA  + ++M E+ + PD   YN+
Sbjct: 1338 LMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNV 1397

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+G C+      A ++ +EM+ K +QP    Y +LI    +   + +A ++FE    KG
Sbjct: 1398 LISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 1457

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PDIV  NA+I G+C  G +  A   +  M ++   PDE TY T++ G  +QG +  A 
Sbjct: 1458 ICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGAL 1517

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            R L  M +R  KP+ +       TY++LI G CK  + D AE L   M ++ ++P+  TY
Sbjct: 1518 RWLCDMIKRKCKPNVV-------TYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTY 1570

Query: 301  FSLIEGIASVDK 312
              LI  +   DK
Sbjct: 1571 TILIGSLFKKDK 1582



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 155/299 (51%), Gaps = 7/299 (2%)

Query: 9    DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
            D+Y+    V G+C E R+EE  +++E     G +P  V YN LIDGYC +G++       
Sbjct: 1146 DNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLL 1205

Query: 69   DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             EM  +G +PT  TY  LI+ L  +  + +   +  EM ++G  P+   YN +I+  C+C
Sbjct: 1206 GEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKC 1265

Query: 129  GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
             +A +A  +  +M   G  P ++T+ +LI  L  +  + +A+      + + + P+ + +
Sbjct: 1266 RSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSY 1325

Query: 189  NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
              LI G C  G +  A  LL EM      PD VT+  L+HG    GKV EA  + ++M  
Sbjct: 1326 TPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE 1385

Query: 249  RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            R + PD    N     YN LI GLCK +    A+ +L EM+ K + PD+  Y +LI+G 
Sbjct: 1386 RQVFPD---VN----IYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGF 1437



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 148/302 (49%), Gaps = 7/302 (2%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G  P    Y   + G C+ G +     +L +M+  G +PT VTY +LI+    KG+LE  
Sbjct: 1177 GCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKI 1236

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             S   EM K+G  P    YN +I  L   R   +A  +LK+M   G  PD IT+N LI G
Sbjct: 1237 GSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITG 1296

Query: 125  YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             C  G+ +KA     E I + + P  L+YT LI     +  ++ A  L    + +G  PD
Sbjct: 1297 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPD 1356

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +V F ALI G    G +  A  + ++M   +V PD   YN L+ G C++  +  A+ +L+
Sbjct: 1357 VVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILE 1416

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +M  + ++PD          Y  LI G  +++    A ++   M  KGI PD  +  ++I
Sbjct: 1417 EMLEKNVQPDE-------FVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMI 1469

Query: 305  EG 306
            +G
Sbjct: 1470 KG 1471



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 153/356 (42%), Gaps = 43/356 (12%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  RG  PD  T+G+ + G+   G++ EA  + E+M E  + P    YN LI G C K  
Sbjct: 1348 MMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRM 1407

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A +  +EM+++ + P    Y  LI   +    + +A  + + M  KGI PD ++ N 
Sbjct: 1408 LPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNA 1467

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +I GYC+ G   +A      M   G  P   TYT++I   +KQ  +  A +   + + + 
Sbjct: 1468 MIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRK 1527

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              P++V +++LI+G+C  G+ + A  L   M    + P+ VTY  L+    ++ KV  A 
Sbjct: 1528 CKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAG 1587

Query: 241  RLLDQMKRRGIKPDHISF------------------------------------------ 258
               + M      P+ ++                                           
Sbjct: 1588 LYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDI 1647

Query: 259  -NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
             +P    YNA+I  LC++     A +    M  KG  P+  T+ SL+ G  SV K+
Sbjct: 1648 GDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKS 1703



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 144/345 (41%), Gaps = 64/345 (18%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
            M   G  P     G+ V+     G L +A++M E+++E  G +P     N L+     + 
Sbjct: 1067 MSLAGAAPTRACLGALVAAYADAGMLGKATKMCERVREQYGSLPEVTHCNRLLKLLVEQR 1126

Query: 60   NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
              + A    DEM+ +       +  +L+  L +ER++ E   +++     G +P  + YN
Sbjct: 1127 RWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYN 1186

Query: 120  ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +LI+GYCR G+  +   L  EM                                     K
Sbjct: 1187 VLIDGYCRRGDMGRGLLLLGEM-----------------------------------ETK 1211

Query: 180  GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            G LP +V + +LI+     G++E+  SL  EM +    P+   YN+++   C+     +A
Sbjct: 1212 GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQA 1271

Query: 240  RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
              +L QM   G  PD I+F                            NP +L+Y  LI G
Sbjct: 1272 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 1331

Query: 272  LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             C   E  +A +LL EM+ +G TPD  T+ +LI G+    K +E+
Sbjct: 1332 FCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEA 1376



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 50/293 (17%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  + VQPD + Y + + G  +   L +A ++ E M+  G+ P  V+ N +I GYC  G 
Sbjct: 1418 MLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGM 1477

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A      M K G +P   TY  +I     +  +  A   L +M ++   P+ +TY+ 
Sbjct: 1478 MSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSS 1537

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LINGYC+ G+   A  L   M  + + P ++TYT LI  L K+++++ A   FE  L   
Sbjct: 1538 LINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNH 1597

Query: 181  MLPDIVM--------------------------------------------------FNA 190
              P+ V                                                   +NA
Sbjct: 1598 CSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNA 1657

Query: 191  LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +I   C +  +  A      M +    P+ +T+ +L++G C  GK    R +L
Sbjct: 1658 IIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTIL 1710



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 90/247 (36%), Gaps = 50/247 (20%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+  G  PD +TY + +SG  K+G L  A R L  M +    P  VTY++LI+GYC  G+
Sbjct: 1488 MRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGD 1547

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--- 117
             + A      M  + + P   TY +LI  L  + K++ A    + M      P+ +T   
Sbjct: 1548 TDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHY 1607

Query: 118  -----------------------------------------------YNILINGYCRCGN 130
                                                           YN +I   CR   
Sbjct: 1608 LVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNM 1667

Query: 131  AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             ++A    + M  KG  P  +T+ SL++      + +    +  N   +     I  +  
Sbjct: 1668 LREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTILPNEFQQEEFEIIFRYKF 1727

Query: 191  LIDGHCT 197
            L D + T
Sbjct: 1728 LFDQYAT 1734


>gi|307136214|gb|ADN34051.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 653

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 169/328 (51%), Gaps = 29/328 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            V P+  TY   ++G CK  RLE A  +L +M + G+     TY  LIDGY  KG+L++A
Sbjct: 282 SVSPNIVTYNCIINGFCKIRRLESAKNVLAEMIKLGIDSNERTYAPLIDGYARKGSLDVA 341

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   DEMV+  ++P    YN LI+ L +E ++ EA  +L +M  + I+PD  TY+IL  G
Sbjct: 342 FRLCDEMVETRLIPDTVVYNSLIYWLYIEGELEEASFLLSDMINRRILPDEFTYSILTKG 401

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G+  KA  +H  ++ + +     T+  LI  + +   +  A QL  + + +G+ PD
Sbjct: 402 LCLSGHLNKALRVHYYIVERNLVKDAYTHNILINYMFQSRNIAGAKQLLSSMIVRGIKPD 461

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +  L+ GHC  G IE A  +  +  +     + V YN+++ G C+QG ++ AR L+D
Sbjct: 462 MVTYGTLVAGHCKEGKIEAAVQIYDKTVKADGKSNLVVYNSILDGLCKQGSIDAARLLVD 521

Query: 245 QMKRRGIKPDHISFNPTR----------------------------LTYNALIQGLCKNQ 276
           ++++ G   D +++N                               ++YN +I  LCK  
Sbjct: 522 KLQQNGF-LDSVTYNTLLHGFCVNGEVEKAFALFLEMINVGSLVNIVSYNIMINFLCKMG 580

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLI 304
               A EL+R M S+GI PD  TY +LI
Sbjct: 581 LIQQAMELMRAMASQGIVPDLITYTTLI 608



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 164/354 (46%), Gaps = 49/354 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G   +  T+   +  +CKE +L EA  ++  M +  + P  V++N +ID     G 
Sbjct: 205 MVASGYSENVNTFNLIIYALCKECKLLEAISVVYLMLKIEIWPNVVSFNMIIDKASKMGE 264

Query: 61  LEMAFSF-RDEMVKQG--IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           +++A    R+  V  G  + P   TYN +I+     R++  A ++L EM + GI  +  T
Sbjct: 265 MDLALKLTRNTEVISGGSVSPNIVTYNCIINGFCKIRRLESAKNVLAEMIKLGIDSNERT 324

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI+GY R G+   AF L DEM+   + P  + Y SLI+ L  +  + EA  L  + +
Sbjct: 325 YAPLIDGYARKGSLDVAFRLCDEMVETRLIPDTVVYNSLIYWLYIEGELEEASFLLSDMI 384

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAF-------------------------------- 205
            + +LPD   ++ L  G C +G++ +A                                 
Sbjct: 385 NRRILPDEFTYSILTKGLCLSGHLNKALRVHYYIVERNLVKDAYTHNILINYMFQSRNIA 444

Query: 206 ---SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
               LL  M    + PD VTY TL+ G C++GK+E A ++ D    + +K D  S     
Sbjct: 445 GAKQLLSSMIVRGIKPDMVTYGTLVAGHCKEGKIEAAVQIYD----KTVKADGKS---NL 497

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKA 313
           + YN+++ GLCK    D A  L+ ++   G   D  TY +L+ G      V+KA
Sbjct: 498 VVYNSILDGLCKQGSIDAARLLVDKLQQNGFL-DSVTYNTLLHGFCVNGEVEKA 550



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 142/289 (49%), Gaps = 16/289 (5%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G  ++   M  +M  +G      T+N +I   C +  L  A S    M+K  I P   ++
Sbjct: 193 GETDKFWNMYMEMVASGYSENVNTFNLIIYALCKECKLLEAISVVYLMLKIEIWPNVVSF 252

Query: 84  NLLIHELLMERKMVEADDMLK-----EMGEKGIV-PDSITYNILINGYCRCGNAKKAFSL 137
           N++I +     KM E D  LK     E+   G V P+ +TYN +ING+C+    + A ++
Sbjct: 253 NMIIDK---ASKMGEMDLALKLTRNTEVISGGSVSPNIVTYNCIINGFCKIRRLESAKNV 309

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
             EMI  GI     TY  LI   +++  +  A +L +  +   ++PD V++N+LI     
Sbjct: 310 LAEMIKLGIDSNERTYAPLIDGYARKGSLDVAFRLCDEMVETRLIPDTVVYNSLIYWLYI 369

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G +E A  LL +M   ++ PDE TY+ L  G C  G + +A R+   +  R +  D   
Sbjct: 370 EGELEEASFLLSDMINRRILPDEFTYSILTKGLCLSGHLNKALRVHYYIVERNLVKD--- 426

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                 T+N LI  + +++    A++LL  M+ +GI PD  TY +L+ G
Sbjct: 427 ----AYTHNILINYMFQSRNIAGAKQLLSSMIVRGIKPDMVTYGTLVAG 471



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 36/192 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLE--------------------------------- 27
           M  RG++PD  TYG+ V+G CKEG++E                                 
Sbjct: 453 MIVRGIKPDMVTYGTLVAGHCKEGKIEAAVQIYDKTVKADGKSNLVVYNSILDGLCKQGS 512

Query: 28  -EASRML-EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
            +A+R+L +++++NG + + VTYNTL+ G+C  G +E AF+   EM+  G +    +YN+
Sbjct: 513 IDAARLLVDKLQQNGFLDS-VTYNTLLHGFCVNGEVEKAFALFLEMINVGSLVNIVSYNI 571

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I+ L     + +A ++++ M  +GIVPD ITY  LI  + +   +     LHD M+ KG
Sbjct: 572 MINFLCKMGLIQQAMELMRAMASQGIVPDLITYTTLITNFVKSYGSDNVIELHDYMVLKG 631

Query: 146 IQPTMLTYTSLI 157
             P   TY SL+
Sbjct: 632 AVPDRQTYQSLV 643



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 2/234 (0%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R +  D+YT+   ++ M +   +  A ++L  M   G+ P  VTY TL+ G+C +G +E 
Sbjct: 421 RNLVKDAYTHNILINYMFQSRNIAGAKQLLSSMIVRGIKPDMVTYGTLVAGHCKEGKIEA 480

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    D+ VK         YN ++  L  +  +  A  ++ ++ + G + DS+TYN L++
Sbjct: 481 AVQIYDKTVKADGKSNLVVYNSILDGLCKQGSIDAARLLVDKLQQNGFL-DSVTYNTLLH 539

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G  +KAF+L  EMI+ G    +++Y  +I  L K   + +A +L     ++G++P
Sbjct: 540 GFCVNGEVEKAFALFLEMINVGSLVNIVSYNIMINFLCKMGLIQQAMELMRAMASQGIVP 599

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           D++ +  LI     +   +    L   M      PD  TY +L+   C Q   E
Sbjct: 600 DLITYTTLITNFVKSYGSDNVIELHDYMVLKGAVPDRQTYQSLV-SPCLQEHTE 652


>gi|224113637|ref|XP_002316529.1| predicted protein [Populus trichocarpa]
 gi|222859594|gb|EEE97141.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 170/335 (50%), Gaps = 29/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  ++P+S TY S + G CK G +  A  +  +M +  + P   TY T+I+GY   G 
Sbjct: 302 MSAGSIKPNSVTYNSLIDGFCKIGGITVAEELRNEMMKIDIEPNVRTYATMIEGYSRAGC 361

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    DEMV++G++P +  YN ++H L ME  +  A  +  +M +K I  D  T +I
Sbjct: 362 LEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSI 421

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L  G CR G    A    ++++   +     ++  LI  L K N    A QL      +G
Sbjct: 422 LTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFLCKSNNFAAARQLLARMYVRG 481

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F  LIDGHC  GNIE A  +  +M + +  P+ + YN++++G C+ G V+ AR
Sbjct: 482 LVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNLLVYNSIINGLCKDGLVDVAR 541

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L+D ++R G+  D I++N                             +  TYN +I+ L
Sbjct: 542 SLVDVLQRMGL-VDTITYNTLINGYFNCGKFDKAFKLSTLMQNAGILASSATYNTVIKFL 600

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK      A+EL+  MV  G+ PD+ TY +L+  I
Sbjct: 601 CKFGCVQEAKELMTMMVLWGVLPDNITYRTLVINI 635



 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 168/349 (48%), Gaps = 47/349 (13%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLID------------ 53
           ++P+  TY + + G  + G LEEA R+ ++M E GL+P +V YN+++             
Sbjct: 342 IEPNVRTYATMIEGYSRAGCLEEALRLCDEMVERGLLPNSVVYNSIMHWLYMEGDVDGAS 401

Query: 54  -----------------------GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
                                  G C  G +  A  F +++++  ++  A ++N+LI+ L
Sbjct: 402 LVFTDMSDKQIPLDKFTCSILTRGLCRNGYITTALKFLNQVLENNLIEDAFSHNILINFL 461

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
                   A  +L  M  +G+VPD +T+  LI+G+C+ GN + A  ++D+M+    +P +
Sbjct: 462 CKSNNFAAARQLLARMYVRGLVPDVVTFGTLIDGHCKEGNIESAVQVYDKMVKGEEKPNL 521

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           L Y S+I  L K   +++  +   + L +  L D + +N LI+G+   G  ++AF L   
Sbjct: 522 LVYNSIINGLCKDG-LVDVARSLVDVLQRMGLVDTITYNTLINGYFNCGKFDKAFKLSTL 580

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M    +     TYNT++   C+ G V+EA+ L+  M   G+ PD+I       TY  L+ 
Sbjct: 581 MQNAGILASSATYNTVIKFLCKFGCVQEAKELMTMMVLWGVLPDNI-------TYRTLVI 633

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
            + KN   +   EL   MV KG+ PD  TY    E I S     ES+ S
Sbjct: 634 NINKNCSAEEVIELHDYMVLKGVVPDKLTY----ENIVSPLLQEESATS 678



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 154/312 (49%), Gaps = 16/312 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G     + + +F+S + K   +     + ++M   G +    T+N ++   C    
Sbjct: 194 LQIEGCWVTIHAWNNFLSHLIKVNEIHRFWIVYKEMVSYGYMENVNTFNVVVHALCKDCK 253

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE------MGEKGIVPD 114
           L+ A S    ++K GI P   T+N+++       KM + D  LK       M    I P+
Sbjct: 254 LQEALSVFYRILKSGIWPNVVTFNMMVDG---ACKMGDMDLALKLVRKMEIMSAGSIKPN 310

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           S+TYN LI+G+C+ G    A  L +EM+   I+P + TY ++I   S+   + EA +L +
Sbjct: 311 SVTYNSLIDGFCKIGGITVAEELRNEMMKIDIEPNVRTYATMIEGYSRAGCLEEALRLCD 370

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G+LP+ V++N+++      G+++ A  +  +M   ++  D+ T + L  G CR G
Sbjct: 371 EMVERGLLPNSVVYNSIMHWLYMEGDVDGASLVFTDMSDKQIPLDKFTCSILTRGLCRNG 430

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  A + L+Q+    +  D  S       +N LI  LCK+     A +LL  M  +G+ 
Sbjct: 431 YITTALKFLNQVLENNLIEDAFS-------HNILINFLCKSNNFAAARQLLARMYVRGLV 483

Query: 295 PDDNTYFSLIEG 306
           PD  T+ +LI+G
Sbjct: 484 PDVVTFGTLIDG 495



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 111/214 (51%), Gaps = 10/214 (4%)

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
           V A +++K++  +G       +N  ++   +     + + ++ EM+  G    + T+  +
Sbjct: 185 VGACEVIKKLQIEGCWVTIHAWNNFLSHLIKVNEIHRFWIVYKEMVSYGYMENVNTFNVV 244

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-- 214
           +  L K  ++ EA  +F   L  G+ P++V FN ++DG C  G+++ A  L+++M+ M  
Sbjct: 245 VHALCKDCKLQEALSVFYRILKSGIWPNVVTFNMMVDGACKMGDMDLALKLVRKMEIMSA 304

Query: 215 -KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
             + P+ VTYN+L+ G C+ G +  A  L ++M +  I+P+       R TY  +I+G  
Sbjct: 305 GSIKPNSVTYNSLIDGFCKIGGITVAEELRNEMMKIDIEPN------VR-TYATMIEGYS 357

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +    + A  L  EMV +G+ P+   Y S++  +
Sbjct: 358 RAGCLEEALRLCDEMVERGLLPNSVVYNSIMHWL 391



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+   S TY + +  +CK G ++EA  ++  M   G++P  +TY TL+       +
Sbjct: 581 MQNAGILASSATYNTVIKFLCKFGCVQEAKELMTMMVLWGVLPDNITYRTLVININKNCS 640

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
            E      D MV +G++P   TY  ++  LL E
Sbjct: 641 AEEVIELHDYMVLKGVVPDKLTYENIVSPLLQE 673


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 171/335 (51%), Gaps = 42/335 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ +TY   ++G  K+G   E  +M E MK +G+VP A  YN LI  YCN G 
Sbjct: 219 MNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGM 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF    EM ++GI     TYN+LI  L   +K  EA  ++ ++ + G+ P+ +TYNI
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK--------------QNRM 166
           LING+C       A  L +++   G+ PT++TY +LI   SK              + R 
Sbjct: 339 LINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398

Query: 167 IEADQLFENFLA---------------------KGMLPDIVMFNALIDGHCTNGNIERAF 205
           I   ++    L                       G++PD+  ++ L+ G C +GN++ A 
Sbjct: 399 IAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEAS 458

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L K +  M + P+ V YNT++HG C++G    A RLL++M + G+ P+  SF  T    
Sbjct: 459 KLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCST---- 514

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              I  LC++++   AE LL +M++ G+ P  + Y
Sbjct: 515 ---IGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 161/317 (50%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS+ V  D+Y++G  + G C+ G   +  R+L  ++E GL P  V Y TLIDG C  GN
Sbjct: 150 LKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGN 208

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A +   +M + G++P   TY++L++    +    E   M + M   GIVP++  YN 
Sbjct: 209 VMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNC 268

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC  G   KAF +  EM  KGI   ++TY  LI  L +  +  EA +L       G
Sbjct: 269 LISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+IV +N LI+G C    ++ A  L  ++    + P  VTYNTL+ G  +   +  A 
Sbjct: 329 LSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M+ R I        P+++TY  LI    +    + A E+   M   G+ PD  TY
Sbjct: 389 DLVKEMEERCIA-------PSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTY 441

Query: 301 FSLIEGIASVDKAAESS 317
             L+ G+       E+S
Sbjct: 442 SVLLHGLCVHGNMKEAS 458



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 158/340 (46%), Gaps = 28/340 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+   Y + + G CK+G +  A  +  +M   GLVP   TY+ L++G+  +G     
Sbjct: 188 GLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREG 247

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   + M + GI+P A  YN LI E   +  + +A  +  EM EKGI    +TYNILI G
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGG 307

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A  L  ++   G+ P ++TY  LI       +M  A +LF    + G+ P 
Sbjct: 308 LCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPT 367

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LI G+    N+  A  L+KEM+   + P +VTY  L+    R    E+A  +  
Sbjct: 368 LVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHS 427

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M++ G+ PD  +++                            P  + YN +I G CK  
Sbjct: 428 LMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEG 487

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
               A  LL EMV  G+ P+  ++ S I  +   +K  E+
Sbjct: 488 SSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEA 527



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 165/361 (45%), Gaps = 57/361 (15%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEA-------------SRMLEQMKENGLVPTAV---T 47
           +G+Q  S++    ++ +   G L +A             S ++ Q+ +    P +     
Sbjct: 32  QGLQHTSHSISFILNHLLSSGMLPQAQSLILRLISGRIPSSLMLQLTQAHFTPCSTYTPL 91

Query: 48  YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
           Y+T+++ Y +  + + A +F   M+ +G +P ++T+N L+  L+      +A  +  E+ 
Sbjct: 92  YDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELK 151

Query: 108 EK----------------------------------GIVPDSITYNILINGYCRCGNAKK 133
            K                                  G+ P+ + Y  LI+G C+ GN   
Sbjct: 152 SKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVML 211

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A +L  +M   G+ P   TY+ L+    KQ    E  Q++EN    G++P+   +N LI 
Sbjct: 212 AKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLIS 271

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
            +C +G +++AF +  EM    +    +TYN L+ G CR  K  EA +L+ ++ + G+ P
Sbjct: 272 EYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSP 331

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           + +       TYN LI G C  ++ D A  L  ++ S G++P   TY +LI G + V+  
Sbjct: 332 NIV-------TYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENL 384

Query: 314 A 314
           A
Sbjct: 385 A 385



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 69/121 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD YTY   + G+C  G ++EAS++ + + E  L P +V YNT+I GYC +G+
Sbjct: 429 MEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EMV+ G++P  +++   I  L  + K  EA+ +L +M   G+ P    Y +
Sbjct: 489 SYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKM 548

Query: 121 L 121
           +
Sbjct: 549 V 549


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 169/318 (53%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +G++ D  TY + V G C+  + ++   ++ +M E G VPT    + L+DG   KGN
Sbjct: 279 LREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGN 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+    ++ + G +P    YN LI+ L     + +A+ + K M    +  + +TY+I
Sbjct: 339 IDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSI 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ G    A S    MI  GI+ T+  Y SLI    K   +  A+ L+   + +G
Sbjct: 399 LIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEG 458

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    F  LI G+C +  +E+AF L +EM+  ++ P   T+  L++G C   ++ EA 
Sbjct: 459 LEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEAS 518

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M  R IK       PT +TYN +I+G CK    D A ELL +M+  G+ PD  TY
Sbjct: 519 KLFDEMVERKIK-------PTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTY 571

Query: 301 FSLIEGIASVDKAAESSN 318
             LI G+ S  + + + +
Sbjct: 572 RPLISGLCSTGRVSAAKD 589



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 167/346 (48%), Gaps = 28/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++   Y Y S ++G CK G L  A  +  +M   GL PTA T+ TLI GYC    
Sbjct: 419 MIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQ 478

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF    EM ++ I P+  T+  LI+ L    +M EA  +  EM E+ I P  +TYN+
Sbjct: 479 VEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNV 538

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+  N  KAF L ++M+H G+ P   TY  LI  L    R+  A    ++   K 
Sbjct: 539 MIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKN 598

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + + ++AL+ G+C  G +  A S   EM +  ++ D V +  L+ G  +Q  ++   
Sbjct: 599 LKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLF 658

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL +M  +G++PD + +                             P  +TY A + GL
Sbjct: 659 GLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGL 718

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           CK  E D A  L  +M++  I+P+  TY   ++ +       E+++
Sbjct: 719 CKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATD 764



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 167/304 (54%), Gaps = 11/304 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+ + Y + ++ +CK   L++A  + + M    L    VTY+ LID +C +G L++A
Sbjct: 353 GFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVA 412

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S+   M++ GI  T   YN LI+       +  A+ +  +M  +G+ P + T+  LI+G
Sbjct: 413 ESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISG 472

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+    +KAF L+ EM  K I P++ T+T+LI+ L   N M EA +LF+  + + + P 
Sbjct: 473 YCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPT 532

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N +I+G+C   N+++AF LL++M    + PD  TY  L+ G C  G+V  A+  +D
Sbjct: 533 EVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFID 592

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR--EMVSKGITPDDNTYFS 302
            + ++ +K +        + Y+AL+ G C   +G L E L    EM+ +GI  D   +  
Sbjct: 593 DLHKKNLKLN-------EMCYSALLHGYC--GQGRLTEALSASCEMIQRGINMDLVCHAV 643

Query: 303 LIEG 306
           LI+G
Sbjct: 644 LIDG 647



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 163/331 (49%), Gaps = 27/331 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P  YT+ + + G+C    + EAS++ ++M E  + PT VTYN +I+GYC   N
Sbjct: 489 MNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHN 548

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   ++M+  G++P   TY  LI  L    ++  A D + ++ +K +  + + Y+ 
Sbjct: 549 MDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSA 608

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G   +A S   EMI +GI   ++ +  LI    KQ  M     L +    +G
Sbjct: 609 LLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQG 668

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++ ++ID +   G+ +++   L  M   K  P+ VTY   M+G C+ G+++ A 
Sbjct: 669 LRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAG 728

Query: 241 RLLDQMKRRGIKPDHISFN---------------------------PTRLTYNALIQGLC 273
            L ++M    I P+ +++                                TYN LI+G C
Sbjct: 729 HLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFC 788

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           K      A ++L EM   GI PD  TY ++I
Sbjct: 789 KLGRLIEATKVLSEMTENGIFPDCITYSTII 819



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 158/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  +  +  TY   +   CK G L+ A     +M E+G+  T   YN+LI+G+C  G+
Sbjct: 384 MHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGD 443

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     +M+ +G+ PTA+T+  LI     + ++ +A  + +EM EK I P   T+  
Sbjct: 444 LSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTA 503

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C      +A  L DEM+ + I+PT +TY  +I    K + M +A +L E+ L  G
Sbjct: 504 LIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNG 563

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +  LI G C+ G +  A   + ++ +  +  +E+ Y+ L+HG C QG++ EA 
Sbjct: 564 LVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEAL 623

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M +RGI  D +        +  LI G  K Q+      LL++M  +G+ PD   Y
Sbjct: 624 SASCEMIQRGINMDLVC-------HAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIY 676

Query: 301 FSLIEG 306
            S+I+ 
Sbjct: 677 TSMIDA 682



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 159/330 (48%), Gaps = 43/330 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD+YTY   +SG+C  GR+  A   ++ + +  L    + Y+ L+ GYC +G 
Sbjct: 559 MLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGR 618

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI---- 116
           L  A S   EM+++GI      + +LI   + ++ M     +LK+M ++G+ PDS+    
Sbjct: 619 LTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTS 678

Query: 117 -------------------------------TYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                          TY   +NG C+ G   +A  L ++M+   
Sbjct: 679 MIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTAN 738

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P  +TY   +  L+K+  M EA  L    L KG+L +   +N LI G C  G +  A 
Sbjct: 739 ISPNSVTYGCFLDSLTKEGNMKEATDLHHEML-KGLLANTATYNILIRGFCKLGRLIEAT 797

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +L EM    + PD +TY+T+++  CR G V  A  L D M R+G++PD ++FN      
Sbjct: 798 KVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFN------ 851

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITP 295
             LI G C N   D A EL  +M+S+G+ P
Sbjct: 852 -LLIYGCCVNGALDKAFELRNDMLSRGLKP 880



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 13/302 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PDS  Y S +    KEG  +++   L+ M      P  VTY   ++G C  G 
Sbjct: 664 MYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGE 723

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M+   I P + TY   +  L  E  M EA D+  EM  KG++ ++ TYNI
Sbjct: 724 IDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEM-LKGLLANTATYNI 782

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ G   +A  +  EM   GI P  +TY+++I+   +   +  A +L++  L KG
Sbjct: 783 LIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKG 842

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV---------TYNTLMHGRC 231
           + PD V FN LI G C NG +++AF L  +M    + P ++           N LMHG C
Sbjct: 843 VEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGC 902

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
             G+V+ A RL   M  R +K   +S    +  Y      + K++E ++ E + +  + K
Sbjct: 903 VTGEVDTALRLYHSMLTRAVK---LSLEMWKCLYLLSYGVISKSEELEVNESITKRRIGK 959

Query: 292 GI 293
            +
Sbjct: 960 AL 961



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 149/356 (41%), Gaps = 63/356 (17%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           R+ +A  +L  M  N L+P   T + +++G        + +   DE V  G+ P   T +
Sbjct: 163 RVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCS 222

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            +I  L   +    A + +  M         +TYN+LI+G C+ G   +A  +   +  K
Sbjct: 223 AVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREK 282

Query: 145 GIQPTMLTYTSLIFVLSK----------QNRMIE-------------------------A 169
           G++  ++TY +L+    +           N M+E                         A
Sbjct: 283 GLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSA 342

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             L       G LP++ ++NALI+  C   ++++A  L K M  M +  ++VTY+ L+  
Sbjct: 343 YDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDS 402

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PT 261
            C++G ++ A     +M   GI+     +N                            PT
Sbjct: 403 FCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPT 462

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
             T+  LI G CK+ + + A +L REM  K I P   T+ +LI G+ S ++ AE+S
Sbjct: 463 ATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEAS 518



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 28/264 (10%)

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           KQ    +   ++ L+H  L   ++ +A  +L+ M    ++P+  T + ++NG  R     
Sbjct: 141 KQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFI 200

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
             + + DE ++ G++P   T +++I  L +      A +      +      IV +N LI
Sbjct: 201 LVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLI 260

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
            G C  G +  A  + K +    +  D VTY TL+ G CR  + ++   L+++M   G  
Sbjct: 261 HGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFV 320

Query: 253 PDHIS----------------------------FNPTRLTYNALIQGLCKNQEGDLAEEL 284
           P   +                            F P    YNALI  LCK ++ D AE L
Sbjct: 321 PTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELL 380

Query: 285 LREMVSKGITPDDNTYFSLIEGIA 308
            + M S  +  +D TY  LI+   
Sbjct: 381 YKNMHSMNLPLNDVTYSILIDSFC 404



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 24/246 (9%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP-----------------DSITYNIL 121
           T +++ +L+H L+  +    A+ +L  +  +G  P                  ++ ++ L
Sbjct: 95  TTTSFAILVHALVQNKLFWPANSLLHTLLLRGSDPKFVFEKFLESHKQCKFSSTLGFDFL 154

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++ Y +      A  +   M+   + P + T ++++  L +  + I   ++F+  +  G+
Sbjct: 155 VHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGV 214

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD    +A+I   C   +  RA   +  M+  +     VTYN L+HG C+ G V EA  
Sbjct: 215 KPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALE 274

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +   ++ +G+K D +       TY  L+ G C+ Q+ D    L+ EMV  G  P +    
Sbjct: 275 VRKSLREKGLKEDVV-------TYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVS 327

Query: 302 SLIEGI 307
            L++G+
Sbjct: 328 GLVDGL 333


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 178/349 (51%), Gaps = 50/349 (14%)

Query: 1   MKSRGVQPDSYTYGSF--VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           MK     PD+ +Y +   V  +C+ G+ +++   L ++ E+GLVP  +TYNT+I GYC +
Sbjct: 218 MKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCRE 277

Query: 59  GNLEMAFSFRDEMVKQGIMPT-----------------------------------ASTY 83
           G +E AF FR++MV++   P                                    A TY
Sbjct: 278 GQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTY 337

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC-GNAKKAFSLHDEMI 142
           N +I  L  E +  EA D+L EM EK + PD  TYN ++       G  +KAF   ++M+
Sbjct: 338 NTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMV 397

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
            K  +P + T   L+  L  +  +  A +LF  +++KG   D V +N +I G C  G  E
Sbjct: 398 EKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFE 457

Query: 203 RAFSLLKEMD-RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
            AF LL EM+ +  + PD+ TYNT++ G CR+G+VE+A +  ++M  +  KPD       
Sbjct: 458 EAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPD------- 510

Query: 262 RLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIEGIA 308
             T N L++GLC+  EG L  A +L    +SKG   D  TY ++I G+ 
Sbjct: 511 LFTCNILLRGLCR--EGMLVKALKLFNTWISKGKAIDAVTYNTIISGLC 557



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 141/272 (51%), Gaps = 37/272 (13%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN-KGNL 61
           S+G   D+ TY + +SG+CKEGR EEA  +L +M+E  L P   TYN ++    + +G +
Sbjct: 327 SKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQV 386

Query: 62  EMAFSFRDEMVKQGIMPT-----------------------------------ASTYNLL 86
           E AF FR++MV++   P                                    A TYN +
Sbjct: 387 EKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTI 446

Query: 87  IHELLMERKMVEADDMLKEMGEK-GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           I  L  E +  EA D+L EM EK G+VPD  TYN +I GYCR G  +KAF   ++M+ K 
Sbjct: 447 ISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKS 506

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P + T   L+  L ++  +++A +LF  +++KG   D V +N +I G C  G  E AF
Sbjct: 507 FKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAF 566

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            LL EM   K+ PD  TYN ++      G++E
Sbjct: 567 DLLAEMKEKKLGPDCYTYNAILCALADAGRME 598



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 162/322 (50%), Gaps = 36/322 (11%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG---YCNKGNLEMAFSFR 68
           + G++VS      R   A+++  +MK   L P  +T NTLI+    Y +K ++ ++ +  
Sbjct: 141 SIGAYVSC----NRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVRYPSKPSVCLSKAIF 196

Query: 69  DEMVKQGI-------------------MPTASTYNLLIHELLMER--KMVEADDMLKEMG 107
             ++K G+                    P  ++YN ++  L + R  K  ++ D L E+ 
Sbjct: 197 TNVIKFGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELL 256

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
           E G+VP  ITYN +I+GYCR G  +KAF   ++M+ K  +P + T   L+  L  +  + 
Sbjct: 257 ESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLD 316

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
            A +LF  +++KG   D V +N +I G C  G  E AF LL EM+  K+ PD  TYN ++
Sbjct: 317 NALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAIL 376

Query: 228 HGRC-RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
                 +G+VE+A +  ++M  +  KPD         T N L++GLC     D A +L  
Sbjct: 377 CALADAEGQVEKAFQFRNKMVEKSFKPD-------LFTCNILLRGLCTEGMLDNALKLFN 429

Query: 287 EMVSKGITPDDNTYFSLIEGIA 308
             +SKG   D  TY ++I G+ 
Sbjct: 430 TWISKGKAIDAVTYNTIISGLC 451



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  +PD +T    + G+C+EG L +A ++       G    AVTYNT+I G C +G 
Sbjct: 502 MVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGR 561

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            E AF    EM ++ + P   TYN ++  L    +M EA++ + ++
Sbjct: 562 FEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRM-EAEEFMSKI 606


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  187 bits (474), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 98/267 (36%), Positives = 148/267 (55%), Gaps = 7/267 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+S +Y   + G+C+ GRLEEA  + +QM E G  P+  TY  LI   C++G ++ AF+ 
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            DEM+ +G  P   TY +LI  L  + K+ EA+ + ++M +  I P  ITYN LINGYC+
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCK 383

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    AF L   M  +  +P + T+  L+  L +  +  +A  L +  L  G+ PDIV 
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVS 443

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LIDG C  G++  A+ LL  M+   + PD +T+  +++  C+QGK + A   L  M 
Sbjct: 444 YNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLML 503

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCK 274
           R+GI  D +       T   LI G+CK
Sbjct: 504 RKGISLDEV-------TGTTLIDGVCK 523



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 174/345 (50%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G       Y + V+ +CK G  E A   + ++ + G V  +    +L+ G+C   N
Sbjct: 186 MEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLN 245

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L  A    D M K+    P + +Y++LIH L    ++ EA  +  +MGEKG  P + TY 
Sbjct: 246 LRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYT 305

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LI   C  G   KAF+L DEMI +G +P + TYT LI  L +  ++ EA+ +    +  
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + P ++ +NALI+G+C +G +  AF LL  M++    P+  T+N LM G CR GK  +A
Sbjct: 366 RIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKA 425

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             LL +M   G+ PD +S+N                            P  LT+ A+I  
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            CK  + D+A   L  M+ KGI+ D+ T  +LI+G+  V K  ++
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDA 530



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 178/393 (45%), Gaps = 81/393 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +P+ +TY   + G+C++G++EEA+ +  +M ++ + P+ +TYN LI+GYC  G 
Sbjct: 327 MIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGR 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M K+   P   T+N L+  L    K  +A  +LK M + G+ PD ++YN+
Sbjct: 387 VVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNV 446

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR G+   A+ L   M    I+P  LT+T++I    KQ +   A       L KG
Sbjct: 447 LIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH----------------------- 217
           +  D V    LIDG C  G    A  +L+ + +M++                        
Sbjct: 507 ISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEEL 566

Query: 218 ------------PDEVTYNTL-----------------------------------MHGR 230
                       P  VTY TL                                   ++G 
Sbjct: 567 AMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGL 626

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C+ G+VEEA +LL  M+  G+ P+H+       TY  +++G   N + D A E +R MV 
Sbjct: 627 CQFGRVEEAEKLLSAMQDSGVSPNHV-------TYTVMVKGYVNNGKLDRALETVRAMVE 679

Query: 291 KGITPDDNTYFSLIEGIA----SVDKAAESSNS 319
           +G   +D  Y SL++G       +D + ES+ S
Sbjct: 680 RGYELNDRIYSSLLQGFVLSQKGIDNSEESTVS 712



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QP + TY   +  +C  G +++A  + ++M   G  P   TY  LIDG C  G 
Sbjct: 292 MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGK 351

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     +MVK  I P+  TYN LI+    + ++V A ++L  M ++   P+  T+N 
Sbjct: 352 IEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNE 411

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G CR G   KA  L   M+  G+ P +++Y  LI  L ++  M  A +L  +     
Sbjct: 412 LMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFD 471

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + F A+I+  C  G  + A + L  M R  +  DEVT  TL+ G C+ GK  +A 
Sbjct: 472 IEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDAL 531

Query: 241 RLLDQMKRRGI----------------------------KPDHISFNPTRLTYNALIQGL 272
            +L+ + +  I                            K + +   P+ +TY  L+ GL
Sbjct: 532 FILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGL 591

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            ++ +   +  +L  M   G  P+   Y  +I G+    +  E+
Sbjct: 592 IRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 101/245 (41%), Gaps = 43/245 (17%)

Query: 104 KEMGEKGIVPDSITYNILIN-----------------------------------GYCRC 128
           + M   G V   I Y  ++N                                   G+CR 
Sbjct: 184 RRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRG 243

Query: 129 GNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            N + A  + D M  +    P  ++Y+ LI  L +  R+ EA  L +    KG  P    
Sbjct: 244 LNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRT 303

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI   C  G I++AF+L  EM      P+  TY  L+ G CR GK+EEA  +  +M 
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +  I P  I       TYNALI G CK+     A ELL  M  +   P+  T+  L+EG+
Sbjct: 364 KDRIFPSVI-------TYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416

Query: 308 ASVDK 312
             V K
Sbjct: 417 CRVGK 421



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A+  +  M   G    M+ Y +++  L K      A+      L  G + D  +  +L+ 
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLL 238

Query: 194 GHCTNGNIERAFSLLKEMDR-MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           G C   N+  A  +   M + +   P+ V+Y+ L+HG C  G++EEA  L DQM  +G +
Sbjct: 239 GFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQ 298

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           P       TR TY  LI+ LC     D A  L  EM+ +G  P+ +TY  LI+G+    K
Sbjct: 299 PS------TR-TYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGK 351

Query: 313 AAESS 317
             E++
Sbjct: 352 IEEAN 356



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            V+ +CKEGR +E++ +++ + E G V      + +++ YC+K            ++K G
Sbjct: 745 LVTRLCKEGRTDESNDLVQNVLERG-VFLEKAMDIIMESYCSKKKHTKCMELITLVLKSG 803

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKE-MGEKGIVPDS--ITY 118
            +P+  ++ L+I  L  E     A +++ E +   G+V  S  +TY
Sbjct: 804 FVPSFKSFCLVIQGLKKEGDAERARELVMELLTSNGVVEKSGVLTY 849


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 56  IETKGNQRSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
              + ++F +E+++ G   +   +N+L+H    E  +  A  +   + + G+ P  ++YN
Sbjct: 116 YFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+++M +A++LFE  L K
Sbjct: 176 TLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G + +A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 296 HDLMDEMSMKGLKPD-------KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V+YNTL++GY   G+L   
Sbjct: 131 GYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++ +EM  KG+VP+ +T+  LI+G
Sbjct: 191 FKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A +++ 
Sbjct: 311 KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSFGLKPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAP 414



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 132/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + E+M   GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C  G++ +   LLKEM R    P  VT
Sbjct: 377 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 162/291 (55%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   + G  KEG +  A  + + + + GL P+ V++NTL++GY   G+L   
Sbjct: 131 GYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+ +  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +  + KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYKP 414



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 175/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A+ LF+  L K
Sbjct: 176 TLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMIMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 172/326 (52%), Gaps = 29/326 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+ Y+Y   + G+C+   + +A R+++ M  NG+ P  VTY TL+ GYC+KG 
Sbjct: 354 MVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGK 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  +EM+++G  P   T N L++ L  E +  EA++ML++M EK    D++T NI
Sbjct: 414 VFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNI 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ----------------------PTMLTYTSLIF 158
           ++NG CR G  +KA  +  EM   G                        P ++TYT+LI 
Sbjct: 474 VVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLIN 533

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L K  ++ EA + F   +AK + PD V ++  +   C  G I  A  +LK+M+R     
Sbjct: 534 GLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSK 593

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
              TYN+L+ G   +G++ E   L+D+M+ RGI PD         TYN +I  LC+  + 
Sbjct: 594 TLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPD-------ICTYNNMINCLCEGGKT 646

Query: 279 DLAEELLREMVSKGITPDDNTYFSLI 304
             A  LL EM+ KG+   + + F ++
Sbjct: 647 KDATSLLHEMLDKGVVSPNVSSFKIL 672



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 165/325 (50%), Gaps = 29/325 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  T+   + G C+EG +EEA  ++E MK+ G   +  +YNT + G    G L    S
Sbjct: 290 KPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRS 349

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             DEMV+ GI P   +YN+++  L     M++A  ++  M   G+ PD++TY  L++GYC
Sbjct: 350 VLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYC 409

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G   +A ++ +EMI KG  P   T  +L+  L K+ R  EA+++ +    K    D V
Sbjct: 410 SKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTV 469

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDR----------------MKVH------PDEVTYN 224
             N +++G C NG +E+A  ++ EM                    +H      PD +TY 
Sbjct: 470 TCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYT 529

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           TL++G C+ GK+EEA++   +M  + + PD +       TY+  +   CK  +   A  +
Sbjct: 530 TLINGLCKVGKLEEAKKKFIEMMAKNLHPDSV-------TYDTFVLNFCKQGKISSALRV 582

Query: 285 LREMVSKGITPDDNTYFSLIEGIAS 309
           L++M   G +    TY SLI G+ S
Sbjct: 583 LKDMERNGCSKTLQTYNSLILGLGS 607



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 178/403 (44%), Gaps = 87/403 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P++YT+   +  +C+   L+ A  + ++M E G  P   T   L+ G+C  G 
Sbjct: 142 MIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGR 201

Query: 61  LEMAFSFRD---------------------------------EMVKQGIMPTASTYNLLI 87
            + A  F D                                  M ++G++P   T+N  I
Sbjct: 202 TKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRI 261

Query: 88  HELLMERKMVEADDMLKEM---GEKGIV-PDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
             L    K+ EA  + ++M   GE G+  P+ +T+N+++ G+C+ G  ++A SL + M  
Sbjct: 262 SALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKK 321

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G   ++ +Y + +  L +  +++E   + +  +  G+ P+I  +N ++DG C N  +  
Sbjct: 322 GGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLD 381

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI------- 256
           A  L+  M    V+PD VTY TL+HG C +GKV EA+ +L++M R+G  P+         
Sbjct: 382 ARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLN 441

Query: 257 ---------------------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI-- 293
                                S+    +T N ++ GLC+N E + A E++ EM + G   
Sbjct: 442 SLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNS 501

Query: 294 --------------------TPDDNTYFSLIEGIASVDKAAES 316
                                PD  TY +LI G+  V K  E+
Sbjct: 502 LGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEA 544



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 134/288 (46%), Gaps = 44/288 (15%)

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S   +M++ G+ P   T+NLLI  L     +  A ++  +M EKG  P+  T  IL+ G+
Sbjct: 137 SLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGF 196

Query: 126 CRCGNAKKAFSLHD---------------------------------EMIHKGIQPTMLT 152
           CR G  K+A    D                                  M  KG+ P ++T
Sbjct: 197 CRAGRTKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVT 256

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGML----PDIVMFNALIDGHCTNGNIERAFSLL 208
           + S I  L +  ++ EA ++F +    G L    P++V FN ++ G C  G +E A SL+
Sbjct: 257 FNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLV 316

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           + M +        +YNT + G  R GK+ E R +LD+M   GI+P+  S       YN +
Sbjct: 317 ETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYS-------YNIV 369

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + GLC+N     A  L+  MVS G+ PD  TY +L+ G  S  K  E+
Sbjct: 370 MDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEA 417



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 155/358 (43%), Gaps = 50/358 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P++YT  + ++ + KEGR  EA  ML++M E       VT N +++G C  G 
Sbjct: 424 MIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGE 483

Query: 61  LEMAFSFRDEMVKQGI----------------------MPTASTYNLLIHELLMERKMVE 98
           LE A     EM   G                       +P   TY  LI+ L    K+ E
Sbjct: 484 LEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEE 543

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A     EM  K + PDS+TY+  +  +C+ G    A  +  +M   G   T+ TY SLI 
Sbjct: 544 AKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLIL 603

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVH 217
            L  + ++ E   L +    +G+ PDI  +N +I+  C  G  + A SLL EM D+  V 
Sbjct: 604 GLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVS 663

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLD-QMKRRGIKPDHIS--FN--------------- 259
           P+  ++  L+   C+ G  + A  L D  +   G K    S  FN               
Sbjct: 664 PNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEALYSLMFNELLAGGKLSDAKELF 723

Query: 260 ---------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                         Y  LI  LCK+   D A  LL++++ KG   D +++  +I+G++
Sbjct: 724 EASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKGYCFDHSSFIPVIDGLS 781



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           +QNR      L+ + +  G+ P+   FN LI   C +  ++ A  L  +M      P++ 
Sbjct: 128 QQNRPHYVTSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKF 187

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           T   L+ G CR G+ ++A   +D           +  N  R+ YN L+   CK    D A
Sbjct: 188 TVGILVRGFCRAGRTKQALEFVD---------GKMGGNVNRVVYNTLVSSFCKQDMNDEA 238

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           E+L+  M  KG+ PD  T+ S I  +    K  E+S
Sbjct: 239 EKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEAS 274



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 2/173 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M+ RG+ PD  TY + ++ +C+ G+ ++A+ +L +M + G+V P   ++  LI  +C  G
Sbjct: 621 MRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSG 680

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           + ++A    D  +       A  Y+L+ +ELL   K+ +A ++ +   E+ ++  +  Y 
Sbjct: 681 DFKVACELFDVALSVCGHKEA-LYSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYE 739

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
            LI+  C+ G    A  L  ++I KG      ++  +I  LSK+    +AD+L
Sbjct: 740 DLIDKLCKDGRLDDAHGLLQKLIDKGYCFDHSSFIPVIDGLSKRGNKQQADEL 792


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 28/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD   Y + + G+CK+G  E A+ +L +M   GL P  V YNT++ G C+   
Sbjct: 249 MPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAER 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EM ++       T+N+L+        +    ++L++M E G +PD ITY  
Sbjct: 309 WEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTT 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G   +A  L   M   G +P  ++YT ++  L +  R ++A +L  + + +G
Sbjct: 369 VINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG 428

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+ V FN LI+  C  G  E+A  LLK+M      PD ++Y+T++ G  + GK EEA 
Sbjct: 429 CLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 488

Query: 241 RLLDQMKRRGIKPDHISFN--PTRLT--------------------------YNALIQGL 272
            LL+ M  +GI P+ I ++   + L+                          YNA+I  L
Sbjct: 489 ELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSL 548

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           CK  E D A +    MVS G  P+++TY  LI G+AS
Sbjct: 549 CKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLAS 585



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 131/253 (51%), Gaps = 1/253 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY + ++G CKEG ++EA  +L+ M   G  P  ++Y  ++ G C    
Sbjct: 354 MLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAER 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M++QG +P   T+N LI+ +  +    +A ++LK+M   G  PD I+Y+ 
Sbjct: 414 WVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYST 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G  ++A  L + MI+KGI P  + Y+S+   LS++ R  +  Q+F++     
Sbjct: 474 VIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDAT 533

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D  ++NA+I   C     +RA      M      P+E TY  L+ G   +G V EA+
Sbjct: 534 VRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQ 593

Query: 241 RLLDQM-KRRGIK 252
            LL ++  RR ++
Sbjct: 594 DLLSELCSRRAVR 606



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 7/283 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D  T+   V   C+ G ++    +LEQM E+G +P  +TY T+I+G+C +G ++ A    
Sbjct: 327 DDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLL 386

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M   G  P   +Y +++  L    + V+A +++  M ++G +P+ +T+N LIN  C+ 
Sbjct: 387 KNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKK 446

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G A++A  L  +M+  G  P +++Y+++I  L K  +  EA +L    + KG+ P+ +++
Sbjct: 447 GLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIY 506

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           +++       G  ++   +   +    V  D   YN ++   C++ + + A      M  
Sbjct: 507 SSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 566

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
            G  P+         TY  LI+GL        A++LL E+ S+
Sbjct: 567 NGCMPNES-------TYTILIRGLASEGLVREAQDLLSELCSR 602



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 162/384 (42%), Gaps = 73/384 (19%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++YTY   V  +C  G + +A  +L++M   G   T    + +++  C  G    A 
Sbjct: 104 VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAV 163

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL---- 121
                +  +G    +   NL++  +  +  + E  ++L+++   G  PD ++YN +    
Sbjct: 164 RALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGL 223

Query: 122 -----------------------------------------INGYCRCGNAKKAFSLHDE 140
                                                    I+G C+ G+ + A  +   
Sbjct: 224 CMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSR 283

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M   G++P ++ Y +++  L    R  EA+ L      +    D V FN L+D  C NG 
Sbjct: 284 MPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGL 343

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN- 259
           ++R   LL++M      PD +TY T+++G C++G V+EA  LL  M   G KP+ IS+  
Sbjct: 344 VDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 403

Query: 260 ---------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
                                      P  +T+N LI  +CK    + A ELL++M+  G
Sbjct: 404 VLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNG 463

Query: 293 ITPDDNTYFSLIEGIASVDKAAES 316
            +PD  +Y ++I+G+    K  E+
Sbjct: 464 CSPDLISYSTVIDGLGKAGKTEEA 487



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 139/344 (40%), Gaps = 55/344 (15%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM----------- 63
           + +  +C  GR  +A+R L+   +   V   V YN +I GYC  G +             
Sbjct: 49  ALIRSLCAAGRTADAARALDTAGDAAGV---VAYNAMIAGYCRAGQVAAARRLAAAVPVP 105

Query: 64  ---------------------AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
                                A +  DEM  +G   T    ++++           A   
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           L+ +  KG   DS   N++++  C  G   +   L  ++   G +P +++Y +++  L  
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 163 QNR----------MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
             R          M+   +        G  PD+ M+  +IDG C +G+ E A  +L  M 
Sbjct: 226 AKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 285

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              + P+ V YNT++ G C   + EEA  LL +M +     D +       T+N L+   
Sbjct: 286 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDV-------TFNILVDFF 338

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKA 313
           C+N   D   ELL +M+  G  PD  TY ++I G      VD+A
Sbjct: 339 CQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEA 382


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 173/345 (50%), Gaps = 33/345 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY  F+ G+CK  R+++A ++L++M E   +PT VTY  L+DG    G L+ A
Sbjct: 37  GCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEA 96

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +  ++MV++G  PT  TY ++I  L    ++ EA  +  +M   G  PD+  Y  LI G
Sbjct: 97  MAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKG 156

Query: 125 YCRCGNAKKAFSLHDEM----IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN-FLAK 179
            C+ G  ++A++L+ E      H    P ++TYTSLI  L K  R++EA Q+F++  + +
Sbjct: 157 LCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVER 216

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G +PD V + ++IDG C  G +E       EM      PD VTY  L+ G  +   + +A
Sbjct: 217 GFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKA 276

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
            R+  QM + G     +++N                             T +TY+AL+ G
Sbjct: 277 HRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDG 336

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            C       A EL R M+ +G  P+  +Y  +I G+    K A++
Sbjct: 337 FCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKA 381



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 161/314 (51%), Gaps = 9/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD+ TY S + G+CK GR+EE      +M+  G  P AVTY  LIDG+     +  
Sbjct: 216 RGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPK 275

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M++ G + +  TYN+++  L    ++ EA      M E+G V   +TY+ L++
Sbjct: 276 AHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMD 335

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  GN   A  L   M+ +G +P +++Y  +I  L +  ++ +A   FE  L + + P
Sbjct: 336 GFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCP 395

Query: 184 DIVMFNALIDGHCTN-GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           D+  FNA + G C     +     L + M      P+  +Y+ LM G CR G +E A  +
Sbjct: 396 DVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEI 455

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M  RG+ PD + F       N LI+ LC     D A E+ RE+  +   PD  +Y+S
Sbjct: 456 FREMVSRGVAPDVVVF-------NTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWS 507

Query: 303 LIEGIASVDKAAES 316
           L++G++  ++  E+
Sbjct: 508 LLDGLSRCERMEEA 521



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 170/313 (54%), Gaps = 12/313 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLE-QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           PD  TY S + G+CK GR+ EA ++ + +  E G +P AVTY ++IDG C  G +E    
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EM  +G  P A TY  LI   +  + + +A  + ++M + G V  ++TYNI+++G C
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A++    M  +G   T++TY++L+     +  +  A +LF   L +G  P++V
Sbjct: 304 KAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLV 363

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-RQGKVEEARRLLDQ 245
            +N +I G C  G + +A+   +++ + ++ PD  T+N  +HG C R   V +   L + 
Sbjct: 364 SYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFES 423

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G  P+  S       Y+ L+ G+C+    ++A E+ REMVS+G+ PD   + +LI 
Sbjct: 424 MVSQGTSPNLHS-------YSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIR 476

Query: 306 GIA---SVDKAAE 315
            +     VD+A E
Sbjct: 477 WLCIAGRVDEALE 489



 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/270 (36%), Positives = 151/270 (55%), Gaps = 12/270 (4%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P  V +  +I+G C +  L+ AFS  +  V+ G  P   TYN+ I  L    ++ +A  +
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           LK+M EK  +P ++TY  L++G  + G   +A ++ ++M+ KG  PT+ TYT +I  LSK
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH----P 218
             R+ EA ++F + L  G  PD  ++ ALI G C +G  E A++L KE +  K H    P
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLL-DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           D VTY +L+ G C+ G++ EAR++  D+   RG  PD +       TY ++I GLCK   
Sbjct: 185 DVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAV-------TYTSIIDGLCKLGR 237

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +   E   EM ++G  PD  TY +LI+G 
Sbjct: 238 VEEGCERFHEMRNRGYEPDAVTYAALIDGF 267



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 161/315 (51%), Gaps = 12/315 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD   +   ++G+C+E RL+EA  +LE+    G  P  VTYN  IDG C    ++ AF 
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M ++  +PT  TY  L+  LL   ++ EA  +L++M EKG  P   TY ++I+G  
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK----GML 182
           + G  ++A  +  +M+  G +P    YT+LI  L K  +  EA  L++   A+      +
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAV 183

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLL-KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           PD+V + +LIDG C  G I  A  +   E       PD VTY +++ G C+ G+VEE   
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
              +M+ RG +PD +       TY ALI G  K +    A  + R+M+  G      TY 
Sbjct: 244 RFHEMRNRGYEPDAV-------TYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYN 296

Query: 302 SLIEGIASVDKAAES 316
            +++G+    + AE+
Sbjct: 297 IILDGLCKAGRVAEA 311



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 162/296 (54%), Gaps = 9/296 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++RG +PD+ TY + + G  K   + +A R+  QM ++G V + VTYN ++DG C  G 
Sbjct: 248 MRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGR 307

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A++    M ++G + T  TY+ L+     E  +  A ++ + M ++G  P+ ++YNI
Sbjct: 308 VAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNI 367

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ-NRMIEADQLFENFLAK 179
           +I G CR G   KA+   ++++ + + P + T+ + +  L ++ + + +  +LFE+ +++
Sbjct: 368 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQ 427

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P++  ++ L+DG C  G +E A  + +EM    V PD V +NTL+   C  G+V+EA
Sbjct: 428 GTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEA 487

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
             +  +++RR          P   +Y +L+ GL + +  + A  L   M  +G  P
Sbjct: 488 LEVFRELERRS--------APDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAP 535



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 137/256 (53%), Gaps = 2/256 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G    + TY   + G+CK GR+ EA      M+E G V T VTY+ L+DG+C++GN
Sbjct: 283 MLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGN 342

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M+ +G  P   +YN++I  L    K+ +A    +++ ++ + PD  T+N 
Sbjct: 343 VSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNA 402

Query: 121 LINGYC-RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            ++G C R         L + M+ +G  P + +Y+ L+  + +   +  A ++F   +++
Sbjct: 403 FLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSR 462

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD+V+FN LI   C  G ++ A  + +E++R +  PD  +Y +L+ G  R  ++EEA
Sbjct: 463 GVAPDVVVFNTLIRWLCIAGRVDEALEVFRELER-RSAPDAWSYWSLLDGLSRCERMEEA 521

Query: 240 RRLLDQMKRRGIKPDH 255
           R L   MK +G  P H
Sbjct: 522 RLLSFHMKLQGCAPRH 537



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 7/103 (6%)

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
           M   PD V +  +++G CR+ +++EA  +L++  R G +PD++       TYN  I GLC
Sbjct: 1   MPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYV-------TYNVFIDGLC 53

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           K +  D A +LL++M  K   P   TY +L++G+    +  E+
Sbjct: 54  KAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEA 96


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  DEV Y  L  G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 414



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 168/326 (51%), Gaps = 28/326 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           + D Y +   ++   + G L +A       +E+       T   +++        ++ + 
Sbjct: 63  RSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN L+NGY 
Sbjct: 123 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L KG++P+ V
Sbjct: 183 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 242

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A  L+D+M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 302

Query: 247 KRRGIKPDHISFNPT----------------------------RLTYNALIQGLCKNQEG 278
             +G+KPD I++                                + Y AL  GLC+    
Sbjct: 303 SVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRS 362

Query: 279 DLAEELLREMVSKGITPDDNTYFSLI 304
             AE++LREM+S G+ PD  TY  +I
Sbjct: 363 VDAEKMLREMLSVGLKPDARTYTMII 388



 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+L   L ++ R ++A+++    L+ G
Sbjct: 317 LIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C  G++ +   LLKEM R    P  VT
Sbjct: 377 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 191

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            L   M++ G+ PD  TY  LI G+    K
Sbjct: 192 RLKSAMLASGVQPDVYTYSVLINGLCKESK 221


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 163/294 (55%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+YT+   V  +CKEG+++EA  ++  M + G+ PT VTYNTL+DGYC    
Sbjct: 254 MVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNE 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      + +  + P + +YN++I+     + + EA  +  EM  +GI P  +TYN 
Sbjct: 314 VGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNS 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A+ L DEM +  I   ++TY SLI V  K   + +A  L +     G
Sbjct: 374 LIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +N LIDG C  G ++ A  + +++     + +  TYN +++G C++G  +EA 
Sbjct: 434 IQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAE 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            LL +M+  GI PD +       TY  +IQ L    E + A++LLREMV KG+ 
Sbjct: 494 VLLSKMEDNGIIPDAV-------TYETIIQALFHKDENEKAQKLLREMVIKGVV 540



 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 169/312 (54%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P   T+ S + G C  G+ ++A R+  +M    + P A T+N L+D  C +G 
Sbjct: 219 MIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGK 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    M+K+G+ PT  TYN L+    +  ++ +A  +L  +    + P+S +YNI
Sbjct: 279 IKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNI 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     +A  L  EM  +GI P  +TY SLI  L K  R+  A +L +      
Sbjct: 339 MINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNC 398

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DIV +N+LID  C N ++++A +L+K++    + P+  TYN L+ G C+ G+++ A+
Sbjct: 399 IPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQ 458

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   +  +G       +N    TYN +I GLCK    D AE LL +M   GI PD  TY
Sbjct: 459 DVFQDLLIKG-------YNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTY 511

Query: 301 FSLIEGIASVDK 312
            ++I+ +   D+
Sbjct: 512 ETIIQALFHKDE 523



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 165/337 (48%), Gaps = 31/337 (9%)

Query: 1   MKSRGVQPDSYTYGSFVS---------------------GMCKEGRLEEASRMLEQMKEN 39
           M+S+GV+PD +T    ++                     G+C  G++ EA    + +   
Sbjct: 93  MESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLAL 152

Query: 40  GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99
           G     VTY  LI+G C  G    A     ++  + +      Y+ +I  L  ++ + +A
Sbjct: 153 GFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDA 212

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
             +  EM  K I P  +T++ LI G+C  G  K AF L +EM+ K I P   T+  L+  
Sbjct: 213 YGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDA 272

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K+ ++ EA  +    + +G+ P +V +N L+DG+C    + +A  +L  + RM+V P+
Sbjct: 273 LCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPN 332

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             +YN +++G C+   V+EA  L  +M  RGI P        ++TYN+LI GLCK     
Sbjct: 333 SRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPH-------KVTYNSLIDGLCKAGRIP 385

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKA 313
            A EL+ EM +  I  D  TY SLI+       VDKA
Sbjct: 386 YAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKA 422



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 146/299 (48%), Gaps = 28/299 (9%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS---------------------FRDEMVK 73
           QM+  G+ P   T + LI+ YC+ G +  AFS                     F D ++ 
Sbjct: 92  QMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLA 151

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
            G      TY +LI+ L    +   A  +L+++  K +  + + Y+ +I+G C+      
Sbjct: 152 LGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTD 211

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A+ L+ EMI K I PT++T++SLI+      +  +A +LF   + K + PD   FN L+D
Sbjct: 212 AYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVD 271

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C  G I+ A +++  M +  V P  VTYNTLM G C   +V +A+ +L  + R  + P
Sbjct: 272 ALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAP 331

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           +  S       YN +I G CK +  D A  L  EM  +GI P   TY SLI+G+    +
Sbjct: 332 NSRS-------YNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGR 383



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 28/235 (11%)

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSL---------------------HDEMIH 143
           +M  KG+ PD  T +ILIN YC  G    AFS+                     HD ++ 
Sbjct: 92  QMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLA 151

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G     +TY  LI  L K  +   A Q+      K +  ++VM++ +IDG C +  +  
Sbjct: 152 LGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTD 211

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A+ L  EM   ++ P  VT+++L++G C  GK ++A RL ++M  + I PD         
Sbjct: 212 AYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPD-------AY 264

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           T+N L+  LCK  +   A+ ++  M+ +G+ P   TY +L++G   V++  ++ +
Sbjct: 265 TFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKH 319



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 29/191 (15%)

Query: 148 PTMLTYTSLI-FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           P+++ +  ++ +++  +N       L     +KG+ PD+   + LI+ +C  G +  AFS
Sbjct: 64  PSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFS 123

Query: 207 LLKEMDRMKV---------------------HPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           +  ++ +M +                     H + VTY  L++G C+ G+   A ++L Q
Sbjct: 124 VFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQ 183

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           ++ + +       N   + Y+ +I GLCK++    A  L  EM+ K I P   T+ SLI 
Sbjct: 184 IEGKLV-------NTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIY 236

Query: 306 GIASVDKAAES 316
           G   V K  ++
Sbjct: 237 GFCIVGKFKDA 247


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + SRG++PD YTY + + G+CKEG  + A   +  +   G  P  V+YN L+  + NK  
Sbjct: 227 LVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSR 286

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E       +MV  G  P   T+++LI     E ++ EA ++L+ M EKG+ PDS +Y+ 
Sbjct: 287 WEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDP 346

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ G    A    ++M+  G  P ++ Y +++  L K      A  +FE     G
Sbjct: 347 LISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVG 406

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +  +N +     + GN  +A  ++ EM R  + PDE+TYN+L+   CR G V+EA 
Sbjct: 407 CPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAI 466

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M       +   F PT +++N ++ G+CK        ELL  MV KG  P++ +Y
Sbjct: 467 GLLVDM-------EATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSY 519

Query: 301 FSLIEGIASVDKAAES 316
             LIEGIA     AE+
Sbjct: 520 VLLIEGIAYAGWRAEA 535



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 171/337 (50%), Gaps = 31/337 (9%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD Y+Y + +SG  K  +++ A+++ ++M+  G  P  VTYN +I   C++G LE+AF  
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            DE++K G  P+  TY +LI   ++E ++ EA ++  E+  +G+ PD  TYN +I G C+
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A      +  +G  P +++Y  L+     ++R  + ++L ++ +  G  P++V 
Sbjct: 249 EGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT 308

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            + LI   C  G +  A ++L+ M    + PD  +Y+ L+   C++G+++ A   L++M 
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMV 368

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
             G  PD +++N                            PT   YN +   L       
Sbjct: 369 SDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKI 428

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKA 313
            A E++ EM+ KGI PD+ TY SLI  +     VD+A
Sbjct: 429 KALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEA 465



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 29/245 (11%)

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
            L+ +  KG  PD +    LI G+    N KKA  +  E++     P + +Y ++I   S
Sbjct: 84  FLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM-EILETYGDPDVYSYNAMISGFS 142

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K N++  A+Q+F+   ++G  PD+V +N +I   C+ G +E AF ++ E+ +    P  +
Sbjct: 143 KANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVI 202

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-------------------------HI 256
           TY  L+     +G++ EA  L D++  RG++PD                         H+
Sbjct: 203 TYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHL 262

Query: 257 S---FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           S    NP  ++YN L++        +  E L+++MV  G  P+  T+  LI       + 
Sbjct: 263 SARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRV 322

Query: 314 AESSN 318
            E+ N
Sbjct: 323 REAVN 327



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 41/214 (19%)

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTML----------------------------- 151
           L+N  CR G   ++    + ++ KG +P ++                             
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 152 -----TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
                +Y ++I   SK N++  A+Q+F+   ++G  PD+V +N +I   C+ G +E AF 
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           ++ E+ +    P  +TY  L+     +G++ EA  L D++  RG++PD         TYN
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPD-------LYTYN 240

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           A+I+G+CK    D A + +R + ++G  PD  +Y
Sbjct: 241 AIIRGICKEGMEDRALDFVRHLSARGCNPDVVSY 274



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 8/139 (5%)

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           E+    E+ ++KG  PD+V+   LI G   + N+++A  +++ ++     PD  +YN ++
Sbjct: 80  ESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMI 138

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
            G  +  +++ A ++ D+M+ RG  PD +       TYN +I  LC   + +LA E++ E
Sbjct: 139 SGFSKANQIDSANQVFDRMRSRGFSPDVV-------TYNIMIGSLCSRGKLELAFEVMDE 191

Query: 288 MVSKGITPDDNTYFSLIEG 306
           ++  G  P   TY  LIE 
Sbjct: 192 LLKDGCKPSVITYTILIEA 210



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           L++  C  G    +   L+ +      PD V    L+ G      +++A R+++ ++  G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                   +P   +YNA+I G  K  + D A ++   M S+G +PD  TY  +I  + S 
Sbjct: 128 --------DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSR 179

Query: 311 DK 312
            K
Sbjct: 180 GK 181



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 39/85 (45%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++   QP   ++   + GMCK  R+ E   +L  M E G +P   +Y  LI+G    G 
Sbjct: 472 MEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGW 531

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNL 85
              A    + + + G++   S+  L
Sbjct: 532 RAEAMELANSLYRLGVISGDSSKRL 556


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 170/304 (55%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+  D Y++ + +   C+  RL  A   L +M + G  P+ VT+ +L++G+C+   ++ A
Sbjct: 103 GISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEA 162

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S  D++V  G  P    YN +I  L   R++  A D+L  M + GI PD ITYN LI  
Sbjct: 163 MSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITR 222

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
               G    +  +  +M+  GI P ++T++++I V  K+ +++EA + ++  + + + P+
Sbjct: 223 LFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPN 282

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV +N+LI+G C +G ++ A  +L  M      P+ VTYNTL++G C+  +V++A ++L 
Sbjct: 283 IVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILC 342

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M   G+  D         TYN L QG C+  + + AE++L  MVS G+ PD  T+  L+
Sbjct: 343 VMSHDGVDGD-------TFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLL 395

Query: 305 EGIA 308
           +G+ 
Sbjct: 396 DGLC 399



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P   T+GS V+G C   R++EA  +++Q+   G  P  V YNT+ID  C    
Sbjct: 134 MMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQ 193

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M K GI P   TYN LI  L    K   +  +L +M   GI PD IT++ 
Sbjct: 194 VDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSA 253

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ + + G   +A   +DEMI + + P ++TY SLI  L     + EA ++    ++KG
Sbjct: 254 MIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKG 313

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V +N L++G+C +  ++ A  +L  M    V  D  TYNTL  G C+ G+   A 
Sbjct: 314 FFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAE 373

Query: 241 RLLDQMKRRGIKPDHISFNPTR----------------------------LTYNALIQGL 272
           ++L +M   G+ PD  +FN                               +TYN +I+G+
Sbjct: 374 KVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGM 433

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK  + + A  L   +  KG++PD  TY +++ G+
Sbjct: 434 CKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGL 468



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 153/288 (53%), Gaps = 7/288 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++PD  TY S ++ +   G+   ++R+L  M   G+ P  +T++ +ID +  +G 
Sbjct: 204 MEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQ 263

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    DEM+++ + P   TYN LI+ L +   + EA  +L  M  KG  P+++TYN 
Sbjct: 264 LLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNT 323

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+      A  +   M H G+     TY +L     +  +   A+++    ++ G
Sbjct: 324 LVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCG 383

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPDI  FN L+DG C +G IE+A   L+++ + +     +TYN ++ G C+  KVE+A 
Sbjct: 384 VLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAW 443

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
            L   +  +G+ PD I       TY  ++ GL + +    A EL R+M
Sbjct: 444 YLFCSLALKGVSPDVI-------TYTTMMIGLRRKRLWLEAHELYRKM 484



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +  +A  +   M E+  +P+ V ++ L+         E   S    +   GI     +++
Sbjct: 53  KFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFS 112

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            LI       ++  A   L +M + G  P  +T+  L+NG+C     ++A SL D+++  
Sbjct: 113 TLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGL 172

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P ++ Y ++I  L +  ++  A  +  +    G+ PD++ +N+LI     +G    +
Sbjct: 173 GYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVS 232

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +L +M RM +HPD +T++ ++    ++G++ EA++  D+M +R       S +P  +T
Sbjct: 233 ARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQR-------SVDPNIVT 285

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           YN+LI GLC +   D A+++L  MVSKG  P+  TY +L+ G
Sbjct: 286 YNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNG 327



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 9/248 (3%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           KGN   A S    +   G     S Y   +   L   K  +A  +  +M E   +P  + 
Sbjct: 18  KGNPVTALSL--NVCNFGAFSGGSDYRERLRSGLHSIKFNDALTLFCDMAESRPLPSIVD 75

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           ++ L+    +    +   SL   +   GI   + ++++LI    + +R+  A       +
Sbjct: 76  FSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMM 135

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G  P IV F +L++G C    I+ A SL+ ++  +   P+ V YNT++   C   +V+
Sbjct: 136 KLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVD 195

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  +L+ M++ GI+PD I       TYN+LI  L  + +  ++  +L +M+  GI PD 
Sbjct: 196 TALDVLNHMEKMGIRPDVI-------TYNSLITRLFHSGKWGVSARILSDMMRMGIHPDV 248

Query: 298 NTYFSLIE 305
            T+ ++I+
Sbjct: 249 ITFSAMID 256


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 174/344 (50%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GVQPD+ TY + + G    G+ ++A RM ++M   G++P  VT +T +   C  G 
Sbjct: 272 MVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGR 331

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F D M+ +G      +Y+ L+H       +V+  ++   M   GIVP+   +NI
Sbjct: 332 IEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNI 391

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGY +CG  ++A  + ++M  +G+ P +LTY ++I    +   M +A   F + + KG
Sbjct: 392 LVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKG 451

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++  LI G CT+G++ +A  L+ E+    + P  +++ +L++  C++G+V EA+
Sbjct: 452 VEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQ 511

Query: 241 RLLDQMKRRGIKPD----------------------------HISFNPTRLTYNALIQGL 272
           R+ D + R G K D                             +   P  +TY  L+ G 
Sbjct: 512 RIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGC 571

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CKN   D    L RE++ KG+ P   TY  +++G+    + A +
Sbjct: 572 CKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAA 615



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 42/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEA------------------------------- 29
           M SRGV P++ T  +FV+ +CK GR+EEA                               
Sbjct: 307 MTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGC 366

Query: 30  ----SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
               S +   M  +G+VP    +N L++GY   G +  A    ++M K+G+ P   TY  
Sbjct: 367 LVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLA 426

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +IH       M +A D    M +KG+ P+   Y  LI G+C  G+  KA  L  E+ +KG
Sbjct: 427 VIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKG 486

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P +L++ SLI  L K+ R+ EA ++F+  +  G   D+ +F +LIDG+C  G +  AF
Sbjct: 487 LGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAF 546

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +   M  + + PD VTY TL++G C+ G++++   L  ++  +G+K       PT  TY
Sbjct: 547 RVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVK-------PTTFTY 599

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             ++ GL        A+E+ +EM+  GI     TY  L+ G+ 
Sbjct: 600 GIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLC 642



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 166/311 (53%), Gaps = 9/311 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLE-QMKENGLVPT-AVTYNTLIDGYCNK 58
           M   G  PD+ +Y + +  +C +GR + A  +L   +K+ G  P   V Y+T++ G   +
Sbjct: 165 MPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKE 224

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +  A     EM +QG+ P   TYN +IH L   R + +A  +L++M   G+ PD++TY
Sbjct: 225 GKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTY 284

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N LI+GY   G  K+A  +  EM  +G+ P  +T ++ +  L K  R+ EA + F++ LA
Sbjct: 285 NTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLA 344

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG   +I+ ++ L+ G+ T G +    +L   M R  + P++  +N L++G  + G V E
Sbjct: 345 KGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVRE 404

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  + + M++RG+ PD        LTY A+I   C+    D A +    M+ KG+ P+  
Sbjct: 405 AMFIFEDMQKRGLNPD-------VLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFA 457

Query: 299 TYFSLIEGIAS 309
            Y  LI+G  +
Sbjct: 458 VYQCLIQGFCT 468



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 164/312 (52%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   +   Y + V G+ KEG++ EA  +  +M + G+ P  VTYN++I   C    ++ A
Sbjct: 206 GCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKA 265

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +MV  G+ P   TYN LIH      +  +A  M KEM  +G++P+++T +  +  
Sbjct: 266 QGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAF 325

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  ++A    D M+ KG +  +++Y++L+   +    +++   LF   +  G++P+
Sbjct: 326 LCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPN 385

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             +FN L++G+   G +  A  + ++M +  ++PD +TY  ++H  CR G +++A    +
Sbjct: 386 QHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFN 445

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +G++P+          Y  LIQG C + +   AEEL+ E+ +KG+ P   ++ SLI
Sbjct: 446 HMIDKGVEPNFA-------VYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLI 498

Query: 305 EGIASVDKAAES 316
             +    +  E+
Sbjct: 499 NHLCKEGRVFEA 510



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 16/319 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ PD  TY + +   C+ G +++A      M + G+ P    Y  LI G+C  G+
Sbjct: 412 MQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGD 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD---DMLKEMGEKGIVPDSIT 117
           L  A     E+  +G+ P   ++  LI+ L  E ++ EA    DM+   GEK    D   
Sbjct: 472 LVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKA---DVNI 528

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  LI+GYC  G   +AF +HD M+  GI+P ++TY +L+    K  R+ +   LF   L
Sbjct: 529 FTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELL 588

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ P    +  ++DG    G    A  + +EM    +     TY+ L+ G CR    E
Sbjct: 589 HKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTE 648

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  +  ++    +K D +         N +I  + K +  + AE L   +   G+ P  
Sbjct: 649 EAITVFQKLCAMNVKFDIV-------ILNIMISKMFKARRREEAEGLFASIPDYGLVPTV 701

Query: 298 NTYFSLIEGI---ASVDKA 313
            TY  ++E +    SV++A
Sbjct: 702 QTYTIMMENLIKEGSVEEA 720



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 148/280 (52%), Gaps = 10/280 (3%)

Query: 42  VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           +PT  TY+ LID  C    L++AF+F   +++QG+       + L+  L   ++  EA D
Sbjct: 100 LPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVD 159

Query: 102 ML-KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK--GIQPTMLTYTSLIF 158
           +L   M E G VPD+I+Y+ ++   C  G ++ A  +    + +  G    ++ Y++++ 
Sbjct: 160 VLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVH 219

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L K+ ++ EA  LF     +G+ P++V +N++I   C    +++A  +L++M    V P
Sbjct: 220 GLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQP 279

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           D VTYNTL+HG    G+ ++A R+  +M  RG+ P+ +       T +  +  LCK+   
Sbjct: 280 DNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTV-------TCSTFVAFLCKHGRI 332

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           + A E    M++KG   +  +Y +L+ G A+     + SN
Sbjct: 333 EEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSN 372



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 123/253 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++++G+ P   ++ S ++ +CKEGR+ EA R+ + +   G       + +LIDGYC  G 
Sbjct: 482 IRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGK 541

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   D MV  GI P   TY  L++      ++ +   + +E+  KG+ P + TY I
Sbjct: 542 MSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGI 601

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G    G    A  +  EMI  GI  T+ TY+ L+  L + N   EA  +F+   A  
Sbjct: 602 ILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMN 661

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DIV+ N +I         E A  L   +    + P   TY  +M    ++G VEEA 
Sbjct: 662 VKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAE 721

Query: 241 RLLDQMKRRGIKP 253
            +   M + G+ P
Sbjct: 722 GVFSVMLKSGLSP 734



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 116/217 (53%), Gaps = 18/217 (8%)

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           G +  +P   TY+ILI+  CR      AF+    ++ +G++  ++  +SL+  L    R 
Sbjct: 95  GPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRT 154

Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP------D 219
            EA D LF      G +PD + ++ ++   C +G  + A  +L    RM V        +
Sbjct: 155 DEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDIL----RMAVKQGGGCPCN 210

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            V Y+T++HG  ++GKV EA  L  +M ++G+ P+ +       TYN++I  LCK +  D
Sbjct: 211 VVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVV-------TYNSVIHALCKARAVD 263

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A+ +LR+MV  G+ PD+ TY +LI G +++ +  ++
Sbjct: 264 KAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQA 300



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 115/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G + D   + S + G C  G++ EA R+ + M   G+ P  VTY TL++G C  G ++  
Sbjct: 521 GEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDG 580

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                E++ +G+ PT  TY +++  L    +   A +M +EM E GI     TY+IL+ G
Sbjct: 581 LILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTG 640

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR    ++A ++  ++    ++  ++    +I  + K  R  EA+ LF +    G++P 
Sbjct: 641 LCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPT 700

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  +  +++     G++E A  +   M +  + P     N ++     +G++ +A
Sbjct: 701 VQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKA 755



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 116/243 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PD  TYG+ V+G CK GR+++   +  ++   G+ PT  TY  ++DG  + G 
Sbjct: 552 MVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGR 611

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM++ GI  T  TY++L+  L       EA  + +++    +  D +  NI
Sbjct: 612 TAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNI 671

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +    ++A  L   +   G+ PT+ TYT ++  L K+  + EA+ +F   L  G
Sbjct: 672 MISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSG 731

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P     N ++      G I +A   +  +D   +  +  T + L+     +GK  E  
Sbjct: 732 LSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKGKHREHL 791

Query: 241 RLL 243
            LL
Sbjct: 792 NLL 794


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R + P+  TY S +  +C+EG + +A R+ + MKE G+ P   TYN L+ G+C   +
Sbjct: 204 MVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDD 263

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF    E++  G++P A  +  LI      ++  EA DM ++M   G+ P    YN 
Sbjct: 264 VNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNS 323

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G  R G+A++A SL+ EM   G+ P   T + ++  L    ++  A +  E     G
Sbjct: 324 LMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDG 383

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   +NALID +C NGN+E A +    M  + V P+ V+Y++L+ G  + GK++ A 
Sbjct: 384 VNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAM 443

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M  +GI+P+ +       TY ALI G  KN   D A    +EM+  GI+P+  T 
Sbjct: 444 AIYTEMVAKGIEPNVV-------TYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITV 496

Query: 301 FSLIEGIASVDKAAES 316
             L++G+   ++  ++
Sbjct: 497 SVLVDGLCRENRVQDA 512



 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 165/300 (55%), Gaps = 11/300 (3%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + + G+ K  R   A  + ++M   G+VP+ VTYNTLI+    +G +  A    D+MV +
Sbjct: 148 AVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVAR 207

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
            I P   TY  +I  L  E  + +A+ +   M E G+ P+  TYN+L++G+C+  +   A
Sbjct: 208 QIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSA 267

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
           F L+ E+++ G+ P  + +T+LI    K  R  EA  +F +    G+ P + ++N+L+DG
Sbjct: 268 FVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDG 327

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
              +G+ + A SL +EM R+ + PDE T + ++ G C  G+++ A R L+     G++ D
Sbjct: 328 AFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLE-----GVRED 382

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEGIASVDK 312
            ++ N     YNALI   C+N  G+L E L     M   G+ P+  +Y SLI+G + + K
Sbjct: 383 GVNLNAA--AYNALIDEYCRN--GNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGK 438



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 160/314 (50%), Gaps = 14/314 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P++  + + + G CK  R  EA  M   M   G+ PT   YN+L+DG    G+ + A
Sbjct: 278 GLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEA 337

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM + G+ P   T ++++  L    ++  A   L+ + E G+  ++  YN LI+ 
Sbjct: 338 LSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDE 397

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YCR GN ++A +    M   G++P +++Y+SLI   SK  +M  A  ++   +AKG+ P+
Sbjct: 398 YCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPN 457

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + ALI GH  NG I+ AF   KEM    + P+ +T + L+ G CR+ +V++A R + 
Sbjct: 458 VVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFV- 516

Query: 245 QMKRRGIKPDHI-SFN-----------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            M+  GIK   I SF            P    Y  LI GL  + +   A +L   M   G
Sbjct: 517 -MEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSG 575

Query: 293 ITPDDNTYFSLIEG 306
           +  D  TY  LI G
Sbjct: 576 MISDSFTYTLLIRG 589



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 131/270 (48%), Gaps = 17/270 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD +T    V G+C  G+++ A+R LE ++E+G+   A  YN LID YC  GN
Sbjct: 344 MTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGN 403

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +    M + G+ P   +Y+ LI       KM  A  +  EM  KGI P+ +TY  
Sbjct: 404 LEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTA 463

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA----------- 169
           LI+G+ + G    AF  H EMI  GI P  +T + L+  L ++NR+ +A           
Sbjct: 464 LIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIK 523

Query: 170 ----DQLFENFLAK--GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
                  F NF  +   ++P+  ++  LI G   +G    A  L   M +  +  D  TY
Sbjct: 524 YSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTY 583

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             L+ G+C  G V  A  L   M + G+KP
Sbjct: 584 TLLIRGQCMLGYVLNAMMLYADMMKIGVKP 613



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P +    +++  L K  R   A +LF+  L +GM+P +V +N LI+     G + +A  +
Sbjct: 141 PALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQGAVAKAQEM 200

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
             +M   ++ P+ +TY +++   C +G + +A RL D MK  G++P+       + TYN 
Sbjct: 201 WDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPN-------QYTYNV 253

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           L+ G C+  + + A  L +E+++ G+ P+   + +LI+G     + +E+ +
Sbjct: 254 LMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKD 304


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G  P   TY++LI+ L  E KM EA ++  EM EKG+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +++ +G+ P ++TY +LI+   K+  + +   L +    KG+ PD
Sbjct: 251 HCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K+M    +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD         TY  ++   CKN + +   +LL+EM   G  P
Sbjct: 371 EMLSVGLKPD-------SGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVP 414



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 170/329 (51%), Gaps = 29/329 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   ++D      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G   + F L + M   G QP + TY+ LI  L K+++M EA +LF+  L K
Sbjct: 176 TLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K++    + PD +TYNTL++G C++G +++ 
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQT 295

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
           R L+D+M  +G+KPD I++                            RL    Y ALI G
Sbjct: 296 RDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTY 300
           LCK      AE++LREM+S G+ PD  TY
Sbjct: 356 LCKEGRSVDAEKMLREMLSVGLKPDSGTY 384



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 131/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G QPD YTY   ++G+CKE +++EA  + ++M E GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGK 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A     +++ QG+ P   TYN LI+    +  + +  D++ EM  KG+ PD ITY  
Sbjct: 257 LDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF    +MI + I+   + YT+LI  L K+ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +++  C NG++     LLKEM R    P  VT
Sbjct: 377 LKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 7/305 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+ PD  TY + + G+CK  ++ EA   L +M   G  P   TYN++IDGYC  G ++ 
Sbjct: 279 RGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQN 338

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +   +G +P  STY  LI+ L  +  +  A ++  E  EKG+ P+ +  N L+ 
Sbjct: 339 ADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVK 398

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G  + G   +A  L +EM   G  P + TY  +I  L K   + +AD L  + +AKG LP
Sbjct: 399 GLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLP 458

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+  FN LIDG+C    ++ A  ++  M    V PD +TYN++++G C+ GK E+     
Sbjct: 459 DVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTF 518

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M  +G  P+ I       TYN L +  CK ++ + A  L+ EM +KG+TPD   + +L
Sbjct: 519 KLMMEKGCVPNII-------TYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTL 571

Query: 304 IEGIA 308
           ++G  
Sbjct: 572 MKGFC 576



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 166/315 (52%), Gaps = 8/315 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RGV P+ +T   F+ G C+   L EA R+L+ +   GL P  +TYNTLI G C    +  
Sbjct: 245 RGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVE 303

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  +  +MV +G  P   TYN +I        M  AD +L++   KG VPD  TY  LIN
Sbjct: 304 AEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLIN 363

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G+  +A ++ +E + KG++P ++   +L+  LS+Q  +++A +L       G  P
Sbjct: 364 GLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSP 423

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI  +N +I+G C  G +  A +L+ +       PD  T+NTL+ G C++ K++ A  ++
Sbjct: 424 DIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIV 483

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D+M   G+ PD I       TYN+++ GLCK  + +      + M+ KG  P+  TY  L
Sbjct: 484 DRMWNHGVSPDVI-------TYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNIL 536

Query: 304 IEGIASVDKAAESSN 318
            E      K  E+ N
Sbjct: 537 TESFCKARKVEEALN 551



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 166/337 (49%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +PD +TY S + G CK G ++ A ++L      G VP   TY +LI+G C  G+
Sbjct: 311 MVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGD 370

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +  +E +++G+ P     N L+  L  +  +++A  ++ EM E G  PD  TYN+
Sbjct: 371 IDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNL 430

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G    A +L  + I KG  P + T+ +LI    K+ ++  A ++ +     G
Sbjct: 431 VINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHG 490

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N++++G C  G  E      K M      P+ +TYN L    C+  KVEEA 
Sbjct: 491 VSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEAL 550

Query: 241 RLLDQMKRRGIKPDHISFNP-----------------------------TRLTYNALIQG 271
            L+++M+ +G+ PD ++F                               T  TYN +I  
Sbjct: 551 NLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINA 610

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                  ++AE+L  +M   G +PD  TY  +I+G  
Sbjct: 611 FAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFC 647



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 160/312 (51%), Gaps = 8/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD   +   +  +C++G ++E+ R+L ++ + G+ P   T N  I G+C +  
Sbjct: 207 MLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAM 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D  V +G+ P   TYN LI  L    K+VEA+  L++M  +G  PD  TYN 
Sbjct: 267 LNEAIRLLDG-VGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNS 325

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G  + A  +  +   KG  P   TY SLI  L +   +  A  +F   + KG
Sbjct: 326 IIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKG 385

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V+ N L+ G    G I +A  L+ EM      PD  TYN +++G C+ G V +A 
Sbjct: 386 LKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDAD 445

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+     +G  PD         T+N LI G CK  + D A E++  M + G++PD  TY
Sbjct: 446 NLVIDAIAKGHLPD-------VFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITY 498

Query: 301 FSLIEGIASVDK 312
            S++ G+    K
Sbjct: 499 NSILNGLCKAGK 510



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 172/320 (53%), Gaps = 12/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD YT+   +   C+  R   A R+L  M   G   +AV Y T+I G+  + +
Sbjct: 137 MRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENH 196

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EM+  GI P    +N LIH L  +  + E++ +L ++ ++G+ P+  T NI
Sbjct: 197 RVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNI 256

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G+C+     +A  L D  + +G+ P ++TY +LI  L K  +++EA+      + +G
Sbjct: 257 FIQGFCQRAMLNEAIRLLDG-VGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEG 315

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +N++IDG+C  G ++ A  +L++       PDE TY +L++G C+ G ++ A 
Sbjct: 316 YEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAI 375

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
            + ++   +G+KP+ +         N L++GL  +Q+G +  A +L+ EM   G +PD  
Sbjct: 376 NVFNEAMEKGLKPNLV-------LCNTLVKGL--SQQGLILQALKLMNEMSENGCSPDIW 426

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY  +I G+  +   +++ N
Sbjct: 427 TYNLVINGLCKIGCVSDADN 446



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++P+     + V G+ ++G + +A +++ +M ENG  P   TYN +I+G C  G +  
Sbjct: 384 KGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSD 443

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A +   + + +G +P   T+N LI     + K+  A +++  M   G+ PD ITYN ++N
Sbjct: 444 ADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILN 503

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G  +        M+ KG  P ++TY  L     K  ++ EA  L E    KG+ P
Sbjct: 504 GLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTP 563

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMD-RMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           D+V F  L+ G C NG+++ A+ L K +D + K      TYN +++    +  +  A +L
Sbjct: 564 DVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKL 623

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++M   G  PD         TY  +I G CK    +     L   + KG+ P   T+
Sbjct: 624 FNKMCENGFSPD-------SYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTF 674



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 156/308 (50%), Gaps = 13/308 (4%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK---ENGLVPTAVTYNTLIDGYCNK 58
           K  G +    TY   +  +   G  E    +L + +   +NGL+     Y   +  Y  K
Sbjct: 32  KEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEG--VYIGAMRNYGRK 89

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G ++ A    + M      P+  +YN +++ L+  R   +A  +   M +KGIVPD  T+
Sbjct: 90  GKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTF 149

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            I +  +CR      A  L + M  +G + + + Y ++I    ++N  +EA +LFE  L 
Sbjct: 150 TIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLG 209

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+ PDI+ FN LI   C  G+++ +  LL ++ +  V P+  T N  + G C++  + E
Sbjct: 210 LGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNE 269

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A RLLD +  RG+ PD I       TYN LI GLCKN +   AE  LR+MV++G  PD  
Sbjct: 270 AIRLLDGVG-RGLTPDVI-------TYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGF 321

Query: 299 TYFSLIEG 306
           TY S+I+G
Sbjct: 322 TYNSIIDG 329



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 162/363 (44%), Gaps = 65/363 (17%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  PD  TY S ++G+C++G ++ A  +  +  E GL P  V  NTL+ G   +G +  
Sbjct: 349 KGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQ 408

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EM + G  P   TYNL+I+ L     + +AD+++ +   KG +PD  T+N LI+
Sbjct: 409 ALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLID 468

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+      A  + D M + G+ P ++TY S++  L K  +  +    F+  + KG +P
Sbjct: 469 GYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVP 528

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG--------- 234
           +I+ +N L +  C    +E A +L++EM    + PD V + TLM G C  G         
Sbjct: 529 NIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLF 588

Query: 235 -KVEE--------------------------ARRLLDQMKRRGIKPDHISFN-------- 259
            +V+E                          A +L ++M   G  PD  ++         
Sbjct: 589 KRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCK 648

Query: 260 --------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD-DN 298
                               P+  T+  ++  LC  +    A  ++  MV KGI P+  N
Sbjct: 649 TGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVVN 708

Query: 299 TYF 301
           T F
Sbjct: 709 TIF 711



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 1/187 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY       CK  ++EEA  ++E+M+  GL P  V + TL+ G+C+ G+
Sbjct: 521 MMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGD 580

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A+     + +Q     T +TYN++I+    +  M  A+ +  +M E G  PDS TY 
Sbjct: 581 LDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYR 640

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ++I+G+C+ GN    +S     I KG+ P++ T+  ++  L  + R+ EA  +    + K
Sbjct: 641 VMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHK 700

Query: 180 GMLPDIV 186
           G++P++V
Sbjct: 701 GIVPEVV 707



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 12/175 (6%)

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENF---LAKGMLPDIVMFNALIDGHCTNGNI 201
           G + T+LTY  +I  L         +++       +  G+L  + +    +  +   G I
Sbjct: 35  GFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYI--GAMRNYGRKGKI 92

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  + + MD     P   +YN +M+        ++A ++  +M+ +GI PD       
Sbjct: 93  QEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPD------- 145

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             T+   ++  C+      A  LL  M S+G       Y ++I G    +   E+
Sbjct: 146 VYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEA 200


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 164/322 (50%), Gaps = 16/322 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  PD  TY S + G  K G L+E   + EQMK+    P  +TYN LI+ +C    
Sbjct: 82  MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFER 141

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF F  EM   G+ P   TY+  I     E  + EA     +M    + P+  TY  
Sbjct: 142 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTS 201

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ GN  +A  L +E++  GI+  ++TYT+L+  L ++ RM EA+++F   L  G
Sbjct: 202 LIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 261

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   + AL+ G      +E A  +LKEM    + PD + Y T++ G C + ++EEA+
Sbjct: 262 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 321

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNA----------------LIQGLCKNQEGDLAEEL 284
            L+ ++K  GI  + + +      Y                  L+ GLCKN   ++A++L
Sbjct: 322 LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKL 381

Query: 285 LREMVSKGITPDDNTYFSLIEG 306
             EM+ KG+ PD   Y +LI+G
Sbjct: 382 FDEMLDKGMMPDKIAYTALIDG 403



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 171/345 (49%), Gaps = 35/345 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G++P+  TY +F+   CKEG L+EA +    M+   L P   TY +LID  C  GN
Sbjct: 152 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 211

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +E+++ GI     TY  L+  L  E +M EA+++ + M   G+ P+  TY  
Sbjct: 212 LAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTA 271

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ +    + A  +  EM  K I+P +L Y ++++ L  ++R+ EA  L       G
Sbjct: 272 LVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG 331

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM--------------------DRM---KVH 217
           +  + V++  L+D +  +G    A +LL+EM                    D M    + 
Sbjct: 332 INTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMM 391

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQ 276
           PD++ Y  L+ G  + G ++EA  L D+M   G++ D H         Y ALI GL  + 
Sbjct: 392 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLH--------AYTALIWGLSHSG 443

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIE---GIASVDKAAESSN 318
           +   A  LL EM+ KG+ PD+  Y  LI+    +  VD+A E  N
Sbjct: 444 QVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQN 488



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 162/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   V P   +  + +  + K GR + + +  + M   G+  +  TYN +ID  C +G+
Sbjct: 12  MRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGD 71

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LEMA S   +M + G  P   TYN LI        + E   + ++M +    PD ITYN 
Sbjct: 72  LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 131

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN +C+     KAF    EM   G++P ++TY++ I    K+  + EA + F +     
Sbjct: 132 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA 191

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   + +LID +C  GN+  A  L++E+ +  +  + VTY  L+ G C +G+++EA 
Sbjct: 192 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAE 251

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M   G+ P+       + TY AL+ G  K +E + A+++L+EM  K I PD   Y
Sbjct: 252 EVFRAMLNAGVAPN-------QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 304

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+ +  +  E+
Sbjct: 305 GTILWGLCNESRLEEA 320



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 155/316 (49%), Gaps = 30/316 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P+ +TY S +   CK G L EA +++E++ + G+    VTY  L+DG C +G 
Sbjct: 187 MRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGR 246

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M+  G+ P   TY  L+H  +  ++M  A D+LKEM EK I PD + Y  
Sbjct: 247 MKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGT 306

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV--------------------- 159
           ++ G C     ++A  L  E+   GI    + YT+L+                       
Sbjct: 307 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLV 366

Query: 160 --LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K N    A +LF+  L KGM+PD + + ALIDG+  +GN++ A +L   M  + + 
Sbjct: 367 DGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGME 426

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
            D   Y  L+ G    G+V++AR LLD+M  +G+ PD +        Y  LI+      +
Sbjct: 427 LDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEV-------VYMCLIKKYYALGK 479

Query: 278 GDLAEELLREMVSKGI 293
            D A EL  EM  +G+
Sbjct: 480 VDEALELQNEMAKRGM 495



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 146/282 (51%), Gaps = 7/282 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           LEEAS    +M++  + P   + N L+      G  +++  F  +M   GI  +  TYN+
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L  E  +  A  +  +M E G  PD +TYN LI+G+ + G   +   + ++M    
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P ++TY +LI    K  RM +A +      A G+ P++V ++  ID  C  G ++ A 
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
               +M R+ + P+E TY +L+   C+ G + EA +L++++ + GIK + +       TY
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVV-------TY 234

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            AL+ GLC+      AEE+ R M++ G+ P+  TY +L+ G 
Sbjct: 235 TALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGF 276



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 45/79 (56%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ D + Y + + G+   G++++A  +L++M   G++P  V Y  LI  Y   G ++ A
Sbjct: 424 GMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEA 483

Query: 65  FSFRDEMVKQGIMPTASTY 83
              ++EM K+G++   S +
Sbjct: 484 LELQNEMAKRGMITGLSDH 502


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 172/309 (55%), Gaps = 9/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P+ +++   + G+C E R +EA  +L  M ++G   +P  V+Y+T+ DG    
Sbjct: 152 MTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKG 211

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G+ + A++   EM+ + I+P   TY+ +I  L   + M +A ++   M + G+ P+  TY
Sbjct: 212 GDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTY 271

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             L++G+C  G   +A    ++M   G++P ++TY+S +  L K  R  EA ++F + + 
Sbjct: 272 TSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVK 331

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ PDI  +++L+ G+   G +     L   M +  + PD   +NTL++   +QGKV+E
Sbjct: 332 RGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDE 391

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  +  +M+ +G+KP+ +       TYN LI G CK    + A  L +EMVS G++P+  
Sbjct: 392 AMLVFSKMRHQGLKPNCV-------TYNTLINGYCKITRMENALALFQEMVSNGVSPNFI 444

Query: 299 TYFSLIEGI 307
           TY  +++G+
Sbjct: 445 TYNIMLQGL 453



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 146/288 (50%), Gaps = 7/288 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+  +Y +   G+ K G  ++A     +M +  ++P  VTY+++I   C    ++ A
Sbjct: 193 GCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKA 252

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MVK G+ P   TY  L+H      ++ EA   L++M   G+ P+ +TY+  ++ 
Sbjct: 253 MEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDY 312

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +A  +   M+ +G++P + TY+SL+   + +  ++E   LF+  +   M PD
Sbjct: 313 LCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPD 372

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             +FN LI      G ++ A  +  +M    + P+ VTYNTL++G C+  ++E A  L  
Sbjct: 373 HYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQ 432

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +M   G+ P+ I       TYN ++QGL +      A+E   +++  G
Sbjct: 433 EMVSNGVSPNFI-------TYNIMLQGLFRTGRTGTAKEFYVQIIKSG 473



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 134/252 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P+  TY S ++ +CK   +++A  + ++M +NG+ P   TY +L+ G+C+ G 
Sbjct: 224 MLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQ 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A  F ++M   G+ P   TY+  +  L    +  EA  +   M ++G+ PD  TY+ 
Sbjct: 284 LTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSS 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY   G   +   L D M+   +QP    + +LI+  +KQ ++ EA  +F     +G
Sbjct: 344 LLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +N LI+G+C    +E A +L +EM    V P+ +TYN ++ G  R G+   A+
Sbjct: 404 LKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAK 463

Query: 241 RLLDQMKRRGIK 252
               Q+ + G K
Sbjct: 464 EFYVQIIKSGKK 475



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 162/339 (47%), Gaps = 33/339 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P  +TYG  +   C  GRL+     L  + + G     + +N L+ G C   + +  M
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK--GIVPDSITYNIL 121
               R  M + G +P   ++ +++  L  E +  EA ++L  M +   G +P+ ++Y+ +
Sbjct: 146 DIVLRG-MTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTV 204

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            +G  + G+  KA++ + EM+ + I P ++TY+S+I  L K   M +A ++ +  +  G+
Sbjct: 205 TDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P+   + +L+ G C++G +  A   L++M    V P+ VTY++ M   C+ G+  EAR+
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARK 324

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           +   M +RG+KPD  +++                            P    +N LI    
Sbjct: 325 IFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASA 384

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           K  + D A  +  +M  +G+ P+  TY +LI G   + +
Sbjct: 385 KQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITR 423



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 133/277 (48%), Gaps = 41/277 (14%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           + PT  TY  LI   C+ G L++ F+    +VK+G       +N L+  L  +++  +A 
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
           D +L+ M E G VP+  ++ I++ G C    +++A     E++H                
Sbjct: 146 DIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEAL----ELLH---------------- 185

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
                 M+  D         G LP++V ++ + DG    G+ ++A++  +EM   ++ P+
Sbjct: 186 ------MMADD-------GGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPN 232

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            VTY++++   C+   +++A  + D+M + G+ P+         TY +L+ G C + +  
Sbjct: 233 VVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNC-------FTYTSLVHGFCSSGQLT 285

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A + L +M S G+ P+  TY S ++ +    +  E+
Sbjct: 286 EAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEA 322



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 12/263 (4%)

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER--KMVEADDMLKEMGEKGIVPDSI 116
           G  E A    DE++++GI     + N  + ++  +     V   + +   G   + P   
Sbjct: 32  GGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVH 91

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA-DQLFEN 175
           TY ILI   C  G     F+    ++ KG +   + +  L+  L    R  +A D +   
Sbjct: 92  TYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRG 151

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQ 233
               G +P++     ++ G C     + A  LL  M  D     P+ V+Y+T+  G  + 
Sbjct: 152 MTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKG 211

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G  ++A     +M  R I P+ +       TY+++I  LCK Q  D A E+   MV  G+
Sbjct: 212 GDPDKAYATYREMLDRRILPNVV-------TYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 294 TPDDNTYFSLIEGIASVDKAAES 316
           TP+  TY SL+ G  S  +  E+
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEA 287


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTLI+GY   G+L+  
Sbjct: 131 GYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G  P   TY++LI+ L  E K+ EA+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+      A  ++ +M+ +G+ P ++TY +LI+ L K+  + +   L +  +  G+ PD
Sbjct: 251 HCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E A  L  +M +  +  D+V Y  L+   CR+G+  +A ++L 
Sbjct: 311 KISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD+        TY  +I   CK ++   A +LLREM   G  P
Sbjct: 371 EMLSVGLKPDNG-------TYTMIINEFCKKRDSKTASKLLREMQRDGPLP 414



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 167/333 (50%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   +    + G + +A +     K++ +     T   +++      
Sbjct: 56  LETKGTQRSDFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFR 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+     E +M  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LINGY + G+  + F L   M   G QP + TY+ LI  L K+ ++ EA++LF   L  
Sbjct: 176 TLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LI GHC N  ++ A  + K+M    + PD +TYNTL++G C++G++++ 
Sbjct: 236 GLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQV 295

Query: 240 RRLLDQMKRRGIKPDHISFN-------------------------PTRL---TYNALIQG 271
             L+D+M   G+KPD IS+                            RL    Y ALI  
Sbjct: 296 HDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISC 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ PD+ TY  +I
Sbjct: 356 LCREGRASDAEKMLREMLSVGLKPDNGTYTMII 388



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 131/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G QPD YTY   ++G+CKEG+L+EA+ +  +M +NGLVP  VT+ TLI G+C    
Sbjct: 197 MHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEK 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ QG+ P   TYN LI+ L  + ++ +  D++ EM   G+ PD I+Y  
Sbjct: 257 VDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A  L ++MI + I+   + YT+LI  L ++ R  +A+++    L+ G
Sbjct: 317 LIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C   + + A  LL+EM R    P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 158/315 (50%), Gaps = 12/315 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+ +TY   ++  CK  ++EEA  +  +M E+  VP AVT+NTLI G+C  G LE A
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 297

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYNILIN 123
                EM K G   T  TYN LI  L  +R  V  A D+  ++   G+ P  +TYN LI 
Sbjct: 298 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 357

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C      +A    DEM  K   P ++TY+ LI  L K  RM EA +  E+  A G  P
Sbjct: 358 GFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTP 416

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +V +  LI+G C  G ++ A    ++M      P+ V +NTL+ G C+  +  +  RLL
Sbjct: 417 TVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLL 476

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M   G KPD I       TYN LI GLC     + A+ L   M      P+  T+  L
Sbjct: 477 CHMHAEGCKPDVI-------TYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFL 526

Query: 304 IEGIASVDKAAESSN 318
           I G+ +  K  E+ N
Sbjct: 527 IRGLCAQKKVEEARN 541



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/279 (35%), Positives = 142/279 (50%), Gaps = 12/279 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK-GNLEMAFS 66
           P++ T+ + ++G CK G LE+A ++  +M++ G   T VTYNTLID  C K G +  A  
Sbjct: 276 PNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVD 335

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +++   G+ PT  TYN LI      R++ EA     EM E    P+ ITY+ILI+G C
Sbjct: 336 LFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLC 394

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +    K+A    ++M   G  PT++TY  LI    K   +  A   FE     G  P+ V
Sbjct: 395 KVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTV 454

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +FN LIDG C          LL  M      PD +TYN L+ G C   +VE+A+RL D M
Sbjct: 455 IFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM 514

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
                     +  P   T+N LI+GLC  ++ + A  +L
Sbjct: 515 ----------ACAPNVTTFNFLIRGLCAQKKVEEARNIL 543



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 166/342 (48%), Gaps = 36/342 (10%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+++TY   + G CK G++ +A  +   MK +GL+P A T NTL+ G C  G +  A   
Sbjct: 30  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 89

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC- 126
             EM     +PT++++N+L+    M  ++ +A   L++M +      + TYN+++ G C 
Sbjct: 90  FREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCW 149

Query: 127 ---RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
                   ++A     EM   G++P + +Y  L+  LS   RM EA  LF    A    P
Sbjct: 150 ENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFS---AMTCSP 206

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI+ +N L+DG+C  G    A SL+KE+ +    P+  TY+ +++  C+  KVEEA  + 
Sbjct: 207 DIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVF 266

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
            +M      P+ ++FN                             T +TYN LI  LCK 
Sbjct: 267 MKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKK 326

Query: 276 QEGDL-AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + G   A +L  ++   G+TP   TY SLI+G     + +E+
Sbjct: 327 RGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEA 368



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 174/356 (48%), Gaps = 45/356 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G+ P++ T  + + G+C+ G++  A ++  +M+    +PT+ ++N L+ G+   G 
Sbjct: 58  MKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGR 117

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK----MVEADDMLKEMGEKGI----- 111
           +  A +   +M K        TYNL++  L  E K    + +A +  KEM   G+     
Sbjct: 118 VRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLE 177

Query: 112 ---------------------------VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                                       PD +TYN+L++GYC+ G   +A SL  E++  
Sbjct: 178 SYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P + TY+ +I    K +++ EA ++F   +    +P+ V FN LI G C  G +E A
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 297

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQ-GKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
             L  EM+++      VTYNTL+   C++ G V  A  L ++++  G+        PT +
Sbjct: 298 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGL-------TPTIV 350

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           TYN+LIQG C  +    A +   EM  K   P+  TY  LI+G+  V +  E++ +
Sbjct: 351 TYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKT 405



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 5/245 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKE-GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M+  G +    TY + +  +CK+ G +  A  +  +++  GL PT VTYN+LI G+C+  
Sbjct: 304 MEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDAR 363

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A  + DEM +    P   TY++LI  L   R+M EA   L++M   G  P  +TY 
Sbjct: 364 RLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYG 422

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LING+C+CG  K A    ++M   G  P  + + +LI  L K  R  +  +L  +  A+
Sbjct: 423 GLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAE 482

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD++ +N LI G C+   +E A  L    D M   P+  T+N L+ G C Q KVEEA
Sbjct: 483 GCKPDVITYNCLISGLCSANRVEDAQRLF---DGMACAPNVTTFNFLIRGLCAQKKVEEA 539

Query: 240 RRLLD 244
           R +LD
Sbjct: 540 RNILD 544



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 120/262 (45%), Gaps = 29/262 (11%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N L+  L+  RK  +A  + KE+      P++ TYN+LI G+C+ G   +A S+  +M  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G+ P   T  +L+  L +  +M  A +LF    A   LP     N L+ G    G +  
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK----VEEARRLLDQMKRRGIKPD----H 255
           A + L++M +        TYN ++ G C + K    +E+A     +MK  G++PD    H
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 256 I---------------------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           I                     + +P  +TYN L+ G CK  +   A+ L++E++  G  
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYE 240

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           P+  TY  +I     +DK  E+
Sbjct: 241 PNVFTYSIIINCYCKLDKVEEA 262


>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
 gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
          Length = 697

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 169/304 (55%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD   Y S +   C++G L+EA +    M ++GL P  +T N ++D YC++G 
Sbjct: 391 MRKNGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQ 450

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A  + ++M  Q I+P + TY+++I+ L   + + +A ++L  M +  I P  I Y  
Sbjct: 451 FEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTT 510

Query: 121 LINGYCR-CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +++GY +   N  KA+ L+ +M   G +P  +T T L+ + SK+ +M +A  LF+    +
Sbjct: 511 IMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEE 570

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D   F A+IDG+C  GN++RA+S+ K+M R  V P+  TY  L+ G C+  +++ A
Sbjct: 571 GLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMA 630

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D MKR  + PD         TY ALI G  + +  D A E+  EM  KG  PD   
Sbjct: 631 TMLIDDMKRNSVTPD-------VKTYTALIAGYQRIENIDRAYEVFDEMKKKGTLPDHIA 683

Query: 300 YFSL 303
           Y +L
Sbjct: 684 YLTL 687



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 167/319 (52%), Gaps = 11/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + ++G + D  +Y + + G  K   ++ A+ ++ +M++NGLVP  + Y +LI  YC KG 
Sbjct: 356 LSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGC 415

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M++ G+ P   T N ++ +     +  EA   + +M ++ I+P+S TY++
Sbjct: 416 LKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSV 475

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR-MIEADQLFENFLAK 179
           +IN  C+    +KA+ +   M    I P+++ YT+++   +KQ +  ++A +L+      
Sbjct: 476 IINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRKMPKL 535

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD V    L+D     G + +A +L KEM    +  DE  +  ++ G CR G V+ A
Sbjct: 536 GCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRA 595

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +  +MKR  + P+         TY  L+ G CK +  D+A  L+ +M    +TPD  T
Sbjct: 596 WSMYKKMKRNNVTPN-------VKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKT 648

Query: 300 YFSLIEG---IASVDKAAE 315
           Y +LI G   I ++D+A E
Sbjct: 649 YTALIAGYQRIENIDRAYE 667



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 33/341 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGR-----LEEASRMLEQMKENGLVPTAVTYNTLIDGY 55
           +K+ G  P+ YTY   ++  CKE       +E+AS +LE+M+E G  PT VTY   I G 
Sbjct: 176 LKNSGPSPNVYTYTIMINFYCKERHGQNIDMEQASLILEEMEEKGENPTVVTYGVYIHGL 235

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           C  G++E A++   ++           YN LI     + +  EA  +L+EM ++GI PD 
Sbjct: 236 CRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDI 295

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
            +Y+IL+N +C  G+ +   +L  EM H   +P ++  TS++  L  +  + +    F  
Sbjct: 296 YSYSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHE 355

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
             AKG   D++ ++ LI G     N++ A +L+ EM +  + PD + Y +L+   CR+G 
Sbjct: 356 LSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGC 415

Query: 236 VEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNA 267
           ++EA +    M + G++PD I+ N                            P   TY+ 
Sbjct: 416 LKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSV 475

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +I  LCK Q  + A E+L  M    I P    Y ++++G A
Sbjct: 476 IINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYA 516



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 161/354 (45%), Gaps = 43/354 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  P   TYG ++ G+C+ G +E+A   ++ ++ +        YN LI G+C KG 
Sbjct: 216 MEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGR 275

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
            + A    +EM  +GI P   +Y++L++    E  +    ++++EM              
Sbjct: 276 PDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTS 335

Query: 107 ---------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                  KG   D I+Y+ LI+G+ +  N K A +L  EM   G
Sbjct: 336 VLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNG 395

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  + Y SLI    ++  + EA + F   L  G+ PDI+  N ++D +C+ G  E A 
Sbjct: 396 LVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQFEEAL 455

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
             + +M    + P+  TY+ +++  C+   VE+A  +L  M +  I P  I        Y
Sbjct: 456 IYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIH-------Y 508

Query: 266 NALIQGLCKNQEGDL-AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             ++ G  K  +  + A +L R+M   G  PD+ T   L++  +   K +++ N
Sbjct: 509 TTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALN 562



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 140/313 (44%), Gaps = 51/313 (16%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           L +A  +  Q K+ G+     + N L+        LE   S  D++   G  P   TY +
Sbjct: 131 LADAKDVFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVRSLFDDLKNSGPSPNVYTYTI 190

Query: 86  LIHELLMERK-----MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           +I+    ER      M +A  +L+EM EKG  P  +TY + I+G CR G+ + A++   +
Sbjct: 191 MINFYCKERHGQNIDMEQASLILEEMEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQD 250

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           +        +  Y +LI    ++ R  EA +L E    +G+ PDI  ++ L++  CT G+
Sbjct: 251 LRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGD 310

Query: 201 IERAFSLLKEMDRMKVHP-----------------------------------DEVTYNT 225
           IE   +L++EM+     P                                   D ++Y+T
Sbjct: 311 IESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYST 370

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL- 284
           L+HG  +   V+ A  L+ +M++ G+ PD+I        Y +LI+  C+  +G L E L 
Sbjct: 371 LIHGFLKGHNVKSANNLVHEMRKNGLVPDYI-------IYISLIREYCR--KGCLKEALK 421

Query: 285 -LREMVSKGITPD 296
               M+  G+ PD
Sbjct: 422 NFYTMLQDGLQPD 434



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 113/265 (42%), Gaps = 33/265 (12%)

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC--RCG- 129
           K G+    S+ N L+  L    K+     +  ++   G  P+  TY I+IN YC  R G 
Sbjct: 143 KIGVELNISSCNFLLKCLAEGDKLEAVRSLFDDLKNSGPSPNVYTYTIMINFYCKERHGQ 202

Query: 130 --NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
             + ++A  + +EM  KG  PT++TY   I  L +   + +A    ++  +     +I  
Sbjct: 203 NIDMEQASLILEEMEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYC 262

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +NALI G C  G  + A  LL+EM    + PD  +Y+ L++  C +G +E    L+ +M+
Sbjct: 263 YNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEME 322

Query: 248 RRGIKPDHIS----------------------------FNPTRLTYNALIQGLCKNQEGD 279
               KP  +                             +    ++Y+ LI G  K     
Sbjct: 323 HCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVK 382

Query: 280 LAEELLREMVSKGITPDDNTYFSLI 304
            A  L+ EM   G+ PD   Y SLI
Sbjct: 383 SANNLVHEMRKNGLVPDYIIYISLI 407


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 166/343 (48%), Gaps = 28/343 (8%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG QP++ T  + + G+C  G +++A    + +   G++   V Y TLI+G C  G    
Sbjct: 148 RGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSID 207

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF    EM  Q + P    YN++I     +    +A D+  ++ + GI PD +TY  LI 
Sbjct: 208 AFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIR 267

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+CR G   +   L  EM++K I P + T+  LI    ++ +MIEA  +F   + +G  P
Sbjct: 268 GFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQP 327

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DIV FN LI GHC +GN+  A  L   +    + PD  +Y  L+ G C+  +++EA  L 
Sbjct: 328 DIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLF 387

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
           ++M+ + +  D + ++                            P  +TYN LI   CK 
Sbjct: 388 NEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKI 447

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           Q+ D+  EL + M  KG+TP   TY  LI G     +  E+ N
Sbjct: 448 QDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMN 490



 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 158/310 (50%), Gaps = 7/310 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  TY S + G C+ G+  E  +++ +M    + P   T+N LID +C KG +  A
Sbjct: 254 GIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEA 313

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               + MVK+G  P   T+N LI    +   ++EA  +   + E+GI+PD  +Y ILI G
Sbjct: 314 QGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIG 373

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+C    +A SL +EM  K +   ++ Y+SLI  L K  R+  A +LF      G  P+
Sbjct: 374 YCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPN 433

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ +N LID  C   +I+    L K M    + P  +TYN L++G C+  ++ EA  LL 
Sbjct: 434 VITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLS 493

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M+ + + PD I       TYN+L  GLCK+     A EL + M   G   D  TY  L+
Sbjct: 494 VMQSKNLAPDSI-------TYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLL 546

Query: 305 EGIASVDKAA 314
           +        A
Sbjct: 547 DAFCKAQDVA 556



 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 163/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + V+P+   Y   +   CK+    +A  +  ++ + G+ P  +TY +LI G+C  G 
Sbjct: 215 MEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQ 274

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                    EMV + I P   T+N+LI     + KM+EA  M   M ++G  PD +T+N 
Sbjct: 275 WGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNT 334

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  GN  +A  L D +  +GI P + +YT LI    K  R+ EA  LF     K 
Sbjct: 335 LISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKN 394

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+ DIV++++LIDG C +G I  A+ L   ++     P+ +TYN L+   C+   ++   
Sbjct: 395 MVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGI 454

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M  +G+        PT LTYN LI G CK++    A  LL  M SK + PD  TY
Sbjct: 455 ELFKLMCGKGL-------TPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITY 507

Query: 301 FSLIEGIASVDKAAES 316
            SL +G+    + +++
Sbjct: 508 NSLFDGLCKSGRISDA 523



 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P  +T   +++  C  G +  A  +L  + + G  P  +T  T++ G C  G 
Sbjct: 110 MVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGE 169

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F D +  QG++     Y  LI+ L    + ++A  +L+EM  + + P+ + YN+
Sbjct: 170 VQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNM 229

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+     KA  L+ +++  GI P +LTYTSLI    +  +  E  QL    + K 
Sbjct: 230 IIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKN 289

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  FN LID  C  G +  A  +   M +    PD VT+NTL+ G C  G V EAR
Sbjct: 290 INPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEAR 349

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D +  RGI PD  S       Y  LI G CK +  D A  L  EM  K +  D   Y
Sbjct: 350 KLFDTVFERGILPDVWS-------YTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLY 402

Query: 301 FSLIEGIA 308
            SLI+G+ 
Sbjct: 403 SSLIDGLC 410



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 144/278 (51%), Gaps = 9/278 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ + P+ YT+   +   C++G++ EA  M   M + G  P  VT+NTLI G+C  GN
Sbjct: 285 MVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGN 344

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D + ++GI+P   +Y +LI      +++ EA  +  EM  K +V D + Y+ 
Sbjct: 345 VLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSS 404

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A+ L   + + G  P ++TY  LI    K   +    +LF+    KG
Sbjct: 405 LIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKG 464

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ +N LI+G+C +  I  A +LL  M    + PD +TYN+L  G C+ G++ +A 
Sbjct: 465 LTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAW 524

Query: 241 RLLDQMKRRGIKPDHISFNPTRL-TYNALIQGLCKNQE 277
            L   M        H+   P  + TYN L+   CK Q+
Sbjct: 525 ELFKVM--------HVGGPPVDVATYNVLLDAFCKAQD 554



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           +++A  +   +     +P+ + +NT+I       +  +A S   +MV +G+ P+  T ++
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
            I+      +M  A  +L  + ++G  P++IT   ++ G C  G  +KA   HD +  +G
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +    + Y +LI  L K  R I+A QL +    + + P+IV++N +ID  C +    +A 
Sbjct: 185 MLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKAR 244

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  ++  M + PD +TY +L+ G CR G+  E ++L+ +M  + I       NP   T+
Sbjct: 245 DLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNI-------NPNVYTF 297

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           N LI   C+  +   A+ +   MV +G  PD  T+ +LI G
Sbjct: 298 NVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISG 338



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 7/158 (4%)

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
           +LS  N + +A  LF + +    LP ++ FN +I       +   A SLLK+M    V P
Sbjct: 58  ILSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTP 117

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
              T +  ++  C  G++  A  +L  + +RG +P++I       T   +++GLC N E 
Sbjct: 118 SIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNI-------TLTTVMKGLCINGEV 170

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             A +    + ++G+  D+  Y +LI G+  + ++ ++
Sbjct: 171 QKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDA 208


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PDSY Y SFV G C+ G L  A R+   M   G + TA TY  L+ G    G +  A
Sbjct: 102 GLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREA 161

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +    M      P    Y  ++H L    +  EA+ +L+E    G  P+ + YN LI+G
Sbjct: 162 MTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G  + A  + + M      P + TYT LI  L K  ++  A  LF   +  G+ P+
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPN 281

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + ALI G C  G+++ AF LL  M+   + P++ T++ L+   C++ KVEEA+  L 
Sbjct: 282 VVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLG 341

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + ++G+K + +        Y +LI GLCK  + D A+EL+++M+S+G  PD ++Y SLI
Sbjct: 342 SLVKKGVKVNEV-------VYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 305 EGIASVDKAAESS 317
           +G+    K ++++
Sbjct: 395 DGLCRQKKLSQAT 407



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++    PD++ Y + V G+C+ GR EEA  +LE+   NG  P  V YN LIDGYCN G 
Sbjct: 168 MRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGE 227

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + M      P   TY  LIH L    K+  A  +   M E G+ P+ +TY  
Sbjct: 228 MEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTA 287

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+ + AF L   M   G+ P   T++ LI  L K+ ++ EA     + + KG
Sbjct: 288 LIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKG 347

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++ +LIDG C  G I+ A  L+++M      PD  +Y++L+ G CRQ K+ +A 
Sbjct: 348 VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQAT 407

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            +L+ M  +GI+   +++                            NP  +TY   ++  
Sbjct: 408 LMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSY 467

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           C+    + AE ++ +MV +G+ P+  TY +LI G A++   +++ ++
Sbjct: 468 CEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 158/319 (49%), Gaps = 10/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+  TY   + G+CK G++E A  +  +M E GL P  VTY  LI G CN+G+
Sbjct: 238 MDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGH 297

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF     M   G++P   T+++LI  L    K+ EA   L  + +KG+  + + Y  
Sbjct: 298 LQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L  +MI +G  P   +Y+SLI  L +Q ++ +A  + E+ + KG
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +    V +  +ID        E    +  +M    ++PD VTY   +   C +G++E+A 
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ QM  RG+ P+ +       TYN LI+G         A      MV KG  P++++Y
Sbjct: 478 SMIVQMVDRGVFPNLV-------TYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSY 530

Query: 301 FSLIEGIASVDKAAESSNS 319
             L+  +    K + S NS
Sbjct: 531 TVLLRLVV---KKSSSDNS 546



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 169/348 (48%), Gaps = 40/348 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+  TY + + G C EG L+ A R+L  M+ NGLVP   T++ LID  C +  
Sbjct: 273 MVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREK 332

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F   +VK+G+      Y  LI  L    K+  AD+++++M  +G VPD+ +Y+ 
Sbjct: 333 VEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSS 392

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR     +A  + ++M+ KGIQ + +TYT +I  L ++       ++F+  +A G
Sbjct: 393 LIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATG 452

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +   +  +C  G +E A S++ +M    V P+ VTYNTL+ G    G V +A 
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAF 512

Query: 241 RLLDQMKRRGIKPDHISFNP-TRLT----------------------------------- 264
              + M  +G KP+  S+    RL                                    
Sbjct: 513 STFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPL 572

Query: 265 ----YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
               Y+  I+ LC+    + A+     M +  +TP ++ Y S+I+  A
Sbjct: 573 AADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCA 620


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 154/295 (52%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G   ++  +LE  K+ G    A  Y+ +I G C  G 
Sbjct: 85  MKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M++ G  P    YN LI+ LL   K  +A  + KE+G +   P  +TYN 
Sbjct: 145 LDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG  P+++TY+ LI  L + +++  A QL+   ++KG
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G  E A  L  +M+     P+ VTYNTLM G  + G    A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G+ PD IS+N T       ++GLC      +A   L + V+K I P
Sbjct: 325 VIWARILRNGLLPDIISYNIT-------LKGLCACNRISVAILFLNDAVTKNIVP 372



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G +  A R+ ++M E+ + P AV YN +++G+   G ++  F   + M ++G    A
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSRNVA 60

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S +N ++  L    ++ E   + + M E G V DS TY IL++G+C+ G   K+  + + 
Sbjct: 61  S-FNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEI 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              +G       Y+++I  L K  ++ +A  +    +  G  P+  ++NALI+G      
Sbjct: 120 AKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + KE+      P  VTYNTL++G C+  +  EA  L+ +M  +G       +NP
Sbjct: 180 FEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKG-------WNP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           + +TY+ LI+GLC++ + ++A +L  +++SKG  PD   +  LI G+ SV K   +S
Sbjct: 233 SVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHAS 289



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 110/222 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P++  Y + ++G+    + E+A R+ +++      PT VTYNTLI+G C    
Sbjct: 155 MIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGER 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G  P+  TY+LLI  L  + K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A  L+ +M H    P ++TY +L+    K      A  ++   L  G
Sbjct: 275 LIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           +LPDI+ +N  + G C    I  A   L +     + P  +T
Sbjct: 335 LLPDIISYNITLKGLCACNRISVAILFLNDAVTKNIVPTVIT 376


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 133 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 192

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 193 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 252

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++  M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 253 HCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPD 312

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 313 KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLR 372

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KP+         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 373 EMLSVGLKPN-------XRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 425

Query: 305 EG 306
            G
Sbjct: 426 NG 427



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 170/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D + +   ++   +   L +A       +E+       T   +++      
Sbjct: 58  LETKGTQRSDIFVFSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 117

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F   +++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 118 YFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 177

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 178 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 237

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K M    + PD +TYNTL++G C++G +++A
Sbjct: 238 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQA 297

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 298 HHLIDEMSMKGLKPD-------KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVA 350

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 351 YTALISGLCQEGRSVDA 367



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 135/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 199 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 258

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M+ Q ++P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 259 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTT 318

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I    + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 319 LIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 378

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + P+   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 379 LKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 141 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 193

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 194 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 228


>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 376

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/295 (34%), Positives = 159/295 (53%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   DS TYG  V G CK G + ++ R+LE  +E G V  A  Y+ +I+G C +  
Sbjct: 85  MTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEEKGGVLDAFAYSAMINGLCKEAK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+  +   K  +A  + +EMG     P  +TYN 
Sbjct: 145 LDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG +P ++TY+ L+  L + +++  A QL+   ++ G
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+ M N LI G C+ G  + A  L  +M+R    P+ VT+NTLM G  + G +  A 
Sbjct: 265 LKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD +S+N T       ++GLC       A   L++ ++K I P
Sbjct: 325 GIWARILRNGLQPDIVSYNIT-------LKGLCSCSRISFAILFLQDALAKKIAP 372



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V PD+  Y + ++G  + GR+++   + E M         V++N ++ G    G+
Sbjct: 16  MAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGRE-XSQNVVSFNIMMRGLFGNGD 74

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  + M + G +  ++TY +L+        + ++  +L+   EKG V D+  Y+ 
Sbjct: 75  VDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEEKGGVLDAFAYSA 134

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     +A S+ + MI  G  P    Y +LI      ++  +A ++F    +  
Sbjct: 135 MINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFREMGSTN 194

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N LI+G C       A+ L+KEM      P  +TY+ LM G C+  KVE A 
Sbjct: 195 CSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMAL 254

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +Q+   G+KPD           N LI GLC   +  LA  L  +M      P+  T+
Sbjct: 255 QLWNQVISNGLKPD-------VQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTH 307

Query: 301 FSLIEG 306
            +L+EG
Sbjct: 308 NTLMEG 313



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 132/291 (45%), Gaps = 41/291 (14%)

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG-------- 107
           C  G+++ A     EM +  + P A  YN +++      ++ +  ++ + MG        
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREXSQNVV 60

Query: 108 --------------------------EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
                                     + G V DS TY IL++G+C+ G   K+  + +  
Sbjct: 61  SFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIA 120

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             KG       Y+++I  L K+ ++ EA  +    +  G  P+  ++N LI+G       
Sbjct: 121 EEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKF 180

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  + +EM      P  VTYNTL++G C+  +  EA  L+ +M  +G K       P 
Sbjct: 181 DDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWK-------PC 233

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            +TY+ L++GLC+  + ++A +L  +++S G+ PD      LI G+ SV K
Sbjct: 234 VITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGK 284



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 107/222 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+++ Y + ++G     + ++A R+  +M      PT VTYNTLI+G C    
Sbjct: 155 MIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGER 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G  P   TY+LL+  L    K+  A  +  ++   G+ PD    NI
Sbjct: 215 FAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A  L+ +M      P ++T+ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDIV +N  + G C+   I  A   L++    K+ P  +T
Sbjct: 335 LQPDIVSYNITLKGLCSCSRISFAILFLQDALAKKIAPSIIT 376


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 157/291 (53%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL+ GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM EA+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +++ +G  P ++TY +LIF L K+  + +A  L +    K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            M   G+KPD+        TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 GMLSVGLKPDNG-------TYTMIINEFCKKGDVKTGSKLLKEMXRDGHVP 414



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 169/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G + +A       +E+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E +M  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GY R G+  + F L   M   G+QP + TY+ LI  L K+++M EA++LF   L  
Sbjct: 176 TLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K++      PD +TYNTL+ G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R L+D+M  + +KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 RDLIDEMSMKELKPD-------KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 131/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++EA+ +  +M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +++ QG  P   TYN LI  L  +  + +A D++ EM  K + PD ITY  
Sbjct: 257 VDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C  G+++    LLKEM R    P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 161/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  +  T  +FV   CKEG + EA ++  QM+  G++P   TY +L+DG C  G 
Sbjct: 295 MKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    DEMV QG++P   TY +++  L  E K+  ADD+L  M   G+  + + Y  
Sbjct: 355 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTT 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+    N+++A  L +EM +KG++  +  Y +LI+ L K  ++ EA  L       G
Sbjct: 415 LIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCG 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++  ++D     G    A +LL ++    + P+ VTY  L+ G C+ G + EA 
Sbjct: 475 LRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAI 534

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              D+M+  G+       +P    Y  LI G CK      A  L+ EMV KG++ D   Y
Sbjct: 535 SHFDKMRELGL-------DPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVY 587

Query: 301 FSLIEG 306
            SLI+G
Sbjct: 588 TSLIDG 593



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 174/351 (49%), Gaps = 35/351 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY S + G  K G LEE   ++ +M+++G     VTYN LI+ +   G 
Sbjct: 225 MKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGW 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+S+  EM + G+M    T +  +     E  + EA  +  +M  +G++P+  TY  
Sbjct: 285 IEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTS 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G    A  L DEM+H+G+ P ++TYT ++  L K+ ++  AD +       G
Sbjct: 345 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + +++  LI GH  N N ERA  LL EM    +  D   Y TL+ G C+  K++EA+
Sbjct: 405 VKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAK 464

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL +M   G++P+ + +                             P  +TY ALI GL
Sbjct: 465 SLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGL 524

Query: 273 CKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEG---IASVDKAAESSN 318
           CK   G + E +    +M   G+ P+   Y +LI+G   I S+ KA    N
Sbjct: 525 CK--AGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMN 573



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 161/346 (46%), Gaps = 28/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ P+ +TY S V G CK GRL++A  +L++M   GLVP  VTY  ++DG C +G 
Sbjct: 330 MRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGK 389

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A      M + G+      Y  LIH   M +    A D+L EM  KG+  D   Y  
Sbjct: 390 VAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGT 449

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+     +A SL  +M   G++P  + YT+++    K  +  EA  L       G
Sbjct: 450 LIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSG 509

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V + ALIDG C  G+I  A S   +M  + + P+   Y TL+ G C+ G + +A 
Sbjct: 510 LQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAV 569

Query: 241 RLLDQMKRRGIKPDHISFNP-----------------------TRL-----TYNALIQGL 272
            L+++M  +G+  D + +                         T L      Y   I G 
Sbjct: 570 HLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGF 629

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           C       A  +L EM+  GITPD   Y  LI     +    E+S+
Sbjct: 630 CNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASS 675



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+ +T+   +  +CK+G L EA  +  +MK  G  P  VTYN+LIDGY   G LE     
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM K G      TYN LI+       + +A     EM   G++ + +T +  ++ +C+
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK 316

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  ++A  L  +M  +G+ P   TYTSL+    K  R+ +A  L +  + +G++P++V 
Sbjct: 317 EGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT 376

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  ++DG C  G +  A  +L  M+R  V  +E+ Y TL+HG       E A  LL++MK
Sbjct: 377 YTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMK 436

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G++ D +S       Y  LI GLCK Q+ D A+ LL +M   G+ P+   Y ++++  
Sbjct: 437 NKGMELD-VSL------YGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAF 489

Query: 308 ASVDKAAES 316
               K +E+
Sbjct: 490 FKAGKESEA 498



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 125/247 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G++ D   YG+ + G+CK  +L+EA  +L +M + GL P  V Y T++D +   G 
Sbjct: 435 MKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGK 494

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   ++   G+ P   TY  LI  L     + EA     +M E G+ P+   Y  
Sbjct: 495 ESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTT 554

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G+  KA  L +EM+ KG+    + YTSLI    KQ  +  A  L    +  G
Sbjct: 555 LIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETG 614

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+  +   I G C    ++ A  +L EM    + PD+  YN L+    + G +EEA 
Sbjct: 615 LQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEAS 674

Query: 241 RLLDQMK 247
            L ++M+
Sbjct: 675 SLQNEME 681


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 169/333 (50%), Gaps = 30/333 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+QP+SYTY   VSG+CKEG+  +A R+   ++   + P  VTY +L+  YC+KGN
Sbjct: 342 MAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGN 401

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    DEM ++G  P + TYN+L+  L    +  EA+ +L+ M EKG   D+   NI
Sbjct: 402 IAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNI 461

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-----------------------IQPTMLTYTSLI 157
           +I+G CR      A  + D M  +G                         P  +TY+ LI
Sbjct: 462 IIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILI 521

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K+ R  EA +     + K + PD V+++  I G+C +G    A  +L++M++   +
Sbjct: 522 SALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCN 581

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P   TYN L+ G   + K EE  +L+ +MK +GI P+        +TYN+LI+  C+   
Sbjct: 582 PSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPN-------VMTYNSLIKSFCQQGM 634

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            + A  LL EM+   + P+  ++  LI+    +
Sbjct: 635 VNKAMPLLDEMLQNELVPNITSFDLLIKAYCKI 667



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 174/377 (46%), Gaps = 69/377 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLV-PTAVTYNTLIDGYC 56
           M+ +G+ P+  T+ + +S +CK GR+ +A R+ + M+E+   GL  P  VT++ ++ G+C
Sbjct: 233 MRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFC 292

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           + G ++ A    D M   G +    +YN  +  L+   ++ EA ++L+EM  +GI P+S 
Sbjct: 293 DAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSY 352

Query: 117 TYNILING-----------------------------------YCRCGNAKKAFSLHDEM 141
           TYNI+++G                                   YC  GN   A  + DEM
Sbjct: 353 TYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEM 412

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             KG  P   TY  L+  L +  R  EA++L E    KG   D    N +IDG C N  +
Sbjct: 413 AQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRL 472

Query: 202 ERAFSLLKEMDR-----------------------MKVHPDEVTYNTLMHGRCRQGKVEE 238
           + A  ++  M                          +  PD++TY+ L+   C++G+ +E
Sbjct: 473 DVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDE 532

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A++ L +M  + I PD +        Y+  I G CK+ +  LA ++LR+M  KG  P   
Sbjct: 533 AKKKLLEMIVKDISPDSV-------IYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTR 585

Query: 299 TYFSLIEGIASVDKAAE 315
           TY  LI G     K+ E
Sbjct: 586 TYNLLIRGFEEKHKSEE 602



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 155/357 (43%), Gaps = 50/357 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+S+TY   +  + + GR  EA R+LE+M E G        N +IDG C    
Sbjct: 412 MAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSR 471

Query: 61  LEMAFSFRDEMVKQG-----------------------IMPTASTYNLLIHELLMERKMV 97
           L++A    D M ++G                        +P   TY++LI  L  E +  
Sbjct: 472 LDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFD 531

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA   L EM  K I PDS+ Y+  I+GYC+ G    A  +  +M  KG  P+  TY  LI
Sbjct: 532 EAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLI 591

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
               ++++  E  +L      KG+ P+++ +N+LI   C  G + +A  LL EM + ++ 
Sbjct: 592 RGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELV 651

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR-GIKPDHISFNPTRLT------------ 264
           P+  +++ L+   C+      A+ + D   R  G K        T LT            
Sbjct: 652 PNITSFDLLIKAYCKITDFPSAQMVFDAALRTCGQKEVLYCLMCTELTTYGKWIEAKNIL 711

Query: 265 --------------YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                         Y  +I GLC+  E D A  LL+ +++K    D   +  +I+ +
Sbjct: 712 EMALEMRVSIQSFPYKQIISGLCEVGEVDHAHSLLKLLIAKRHLFDPAAFMPVIDAL 768



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 140/316 (44%), Gaps = 19/316 (6%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD +T    +  +C  GR+E A R+ + M          ++  L  GYC  G    A
Sbjct: 140 GAQPDVFTRNLLLQALCDAGRMELAQRVFDAMPAR----NEFSFGILARGYCRAGRSIDA 195

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D M    ++   +       E L+E    EA+ +++ M  +G+ P+ +T+N  I+ 
Sbjct: 196 LKVLDGMPSMNLVVCNTVVAGFCKEGLVE----EAERLVERMRVQGLAPNVVTFNARISA 251

Query: 125 YCRCGNAKKAFSLHDEMI----HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            C+ G    A+ +  +M     H   +P  +T+  ++        + EA  L +     G
Sbjct: 252 LCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            L  +  +N  + G   NG +  A  LL+EM    + P+  TYN ++ G C++GK  +AR
Sbjct: 312 FLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDAR 371

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ +   R G+       +P  +TY +L+   C       A  +L EM  KG  P+  TY
Sbjct: 372 RV-ENFIRSGV------MSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTY 424

Query: 301 FSLIEGIASVDKAAES 316
             L++ +    +  E+
Sbjct: 425 NVLLQSLWRAGRTTEA 440



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 135/280 (48%), Gaps = 23/280 (8%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           PT   YN LI     +  L++  +   +++  G  P   T NLL+  L    +M  A  +
Sbjct: 108 PTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQRV 167

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM--LTYTSLIFVL 160
              M  +    +  ++ IL  GYCR G +  A  + D M      P+M  +   +++   
Sbjct: 168 FDAMPAR----NEFSFGILARGYCRAGRSIDALKVLDGM------PSMNLVVCNTVVAGF 217

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH--- 217
            K+  + EA++L E    +G+ P++V FNA I   C  G +  A+ + ++M     H   
Sbjct: 218 CKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLP 277

Query: 218 -PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD+VT++ ++ G C  G V+EAR L+D M+  G       F     +YN  + GL +N 
Sbjct: 278 RPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGG-------FLRRVESYNRWLSGLVRNG 330

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
               A+ELLREM  +GI P+  TY  ++ G+    KA ++
Sbjct: 331 RVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDA 370



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 138/320 (43%), Gaps = 34/320 (10%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TY   +S +CKEGR +EA + L +M    + P +V Y+T I GYC  G   +A   
Sbjct: 512 PDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKV 571

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M K+G  P+  TYNLLI     + K  E   ++ EM EKGI P+ +TYN LI  +C+
Sbjct: 572 LRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQ 631

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV---------------------------- 159
            G   KA  L DEM+   + P + ++  LI                              
Sbjct: 632 QGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMVFDAALRTCGQKEVLY 691

Query: 160 ------LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
                 L+   + IEA  + E  L   +      +  +I G C  G ++ A SLLK +  
Sbjct: 692 CLMCTELTTYGKWIEAKNILEMALEMRVSIQSFPYKQIISGLCEVGEVDHAHSLLKLLIA 751

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
            +   D   +  ++     +GK ++   L  +M     + D +  +  ++T  +      
Sbjct: 752 KRHLFDPAAFMPVIDALGDRGKKQDVDMLSAKMMEMADRNDGLGTDSGKITPGSCKHEHD 811

Query: 274 KNQEGDLAEELLREMVSKGI 293
           +N E D    L R+  ++ I
Sbjct: 812 RNGESDWRTLLHRDDSARTI 831


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 180/335 (53%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++GV  D   Y S V+G+C+ G ++ A  M++ MK +G+ P  VTY   I  YC +  
Sbjct: 200 MKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNA 259

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AFS  +EMV++G++P   T + L+  L  + +  EA  + +EM + G  P+ +TY +
Sbjct: 260 VDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCM 319

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   +     ++ SL  E++ +G+   ++ YT+L+  L K+ ++ EA  +F + L+  
Sbjct: 320 LIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDN 379

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V +  LID  C  GN++ A  +L EM+   + P+ VT++++++G  ++G V +A 
Sbjct: 380 HTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKAT 439

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
             + +MK RGI P+ +++                               +   ++L+ GL
Sbjct: 440 DYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGL 499

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            KN + + AE L REM  +G+  D   Y +LI+G+
Sbjct: 500 KKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGL 534



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 162/309 (52%), Gaps = 9/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP--TAVTYNTLIDGYCNK 58
           M  RGV  D+ T  + + G+C++GR++ A+ + E M   G +     V +N+L+DGYC  
Sbjct: 128 MCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKV 187

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G++E AF+  + M  QG+      YN L+  L    ++  A DM+  M   G+ P+ +TY
Sbjct: 188 GDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTY 247

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            + I  YCR      AFSL++EM+ KG+ P ++T ++L+  L K  R  EA  LF     
Sbjct: 248 TMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEK 307

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G  P+ V +  LID          + SLL E+    V  D + Y  LM   C++GK++E
Sbjct: 308 IGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDE 367

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A+     M R  +  +H    P  +TY  LI  LCK    D AE++L EM  K I+P+  
Sbjct: 368 AK----DMFRHALSDNH---TPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVV 420

Query: 299 TYFSLIEGI 307
           T+ S+I G+
Sbjct: 421 TFSSIINGL 429



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 167/332 (50%), Gaps = 28/332 (8%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRGV  D   Y + +  +CKEG+++EA  M      +   P  VTY  LID  C  GN++
Sbjct: 342 SRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVD 401

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM ++ I P   T++ +I+ L+    + +A D ++EM E+GI P+ +TY  +I
Sbjct: 402 GAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVI 461

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G  +C   + A  ++ EM+ +G++       SL+  L K  ++ +A+ LF     +G+L
Sbjct: 462 DGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVL 521

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            D V +  LIDG    GN+  AF + +E+    + PD V YN  ++  C  GK +EA   
Sbjct: 522 LDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESF 581

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
           L++M+  G+KPD +++N                            P  +TY+ LI GL +
Sbjct: 582 LEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFE 641

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               + A+ LL EM S G +P   T+  +++ 
Sbjct: 642 AGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA 673



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 157/298 (52%), Gaps = 7/298 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D   + S V G CK G +E A  + E+MK  G+    V YN+L+ G C  G ++ A    
Sbjct: 173 DVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMV 232

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           D M + G+ P   TY + I E      + +A  + +EM  KG++PD +T + L+ G C+ 
Sbjct: 233 DTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKD 292

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G   +A++L  EM   G  P  +TY  LI  L+K  R  E+  L    +++G++ D++M+
Sbjct: 293 GRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMY 352

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            AL+D  C  G I+ A  + +        P+ VTY  L+   C+ G V+ A ++L +M+ 
Sbjct: 353 TALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEE 412

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + I P+ +       T++++I GL K      A + +REM  +GI P+  TY ++I+G
Sbjct: 413 KSISPNVV-------TFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDG 463



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 165/373 (44%), Gaps = 63/373 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+ + +   S V+G+ K G++E+A  +  +M E G++   V Y TLIDG    GN
Sbjct: 480 MLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGN 539

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF    E+ ++ ++P A  YN+ I+ L M  K  EA+  L+EM   G+ PD +TYN 
Sbjct: 540 LPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNT 599

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    R G   KA  L + M    I+P ++TY++LI  L +   + +A  L     + G
Sbjct: 600 MIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSG 659

Query: 181 MLP-----------------------------------DIVMFNALIDGHCTNGNIERAF 205
             P                                   DI ++N L+   C NG   +A 
Sbjct: 660 FSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAM 719

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
            +L+EM    + PD +T+N L+ G  + G ++ A    DQM   GI P+  +FN      
Sbjct: 720 VVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGL 779

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P+ LTY+ L+ G  K      A  L  EMV KG  P  
Sbjct: 780 ESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKV 839

Query: 298 NTYFSLIEGIASV 310
           +TY +LI   + V
Sbjct: 840 STYNALISDFSKV 852



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + + P+  T+ S ++G+ K G + +A+  + +MKE G+ P  VTY T+IDG      
Sbjct: 410 MEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLG 469

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EM+ +G+       + L++ L    K+ +A+ + +EM E+G++ D + Y  
Sbjct: 470 QEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTT 529

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + GN   AF +  E+  K + P  + Y   I  L    +  EA+   E   + G
Sbjct: 530 LIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTG 589

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V +N +I      G   +A  LL  M R  + P+ +TY+TL+ G    G VE+A+
Sbjct: 590 LKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAK 649

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M   G       F+PT LT+  ++Q   + +  DL  E+   M++ G+  D   Y
Sbjct: 650 YLLNEMSSSG-------FSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVY 702

Query: 301 FSLI 304
            +L+
Sbjct: 703 NTLV 706



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 163/338 (48%), Gaps = 42/338 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G++PD  TY + ++   +EG+  +A ++L  MK + + P  +TY+TLI G    G 
Sbjct: 585 MQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGA 644

Query: 61  LEMAFSFRDEMVKQGIMPTASTYN---------------LLIHELLMERKMV-------- 97
           +E A    +EM   G  PT+ T+                L IHE +M   +         
Sbjct: 645 VEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNT 704

Query: 98  ------------EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                       +A  +L+EM  +GI PD+IT+N LI G+ + G+   AFS +D+M++ G
Sbjct: 705 LVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHG 764

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P + T+ +L+  L    R+ E+D +      +G+ P  + ++ L+ G+    N   A 
Sbjct: 765 ISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAV 824

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  EM      P   TYN L+    + G + +A+ L ++M+ RG+        PT  TY
Sbjct: 825 RLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVL-------PTSCTY 877

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + L+ G  K + G    + L++M  KG +P   T  S+
Sbjct: 878 DILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSI 915



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 158/344 (45%), Gaps = 28/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD  T  + V G+CK+GR  EA  +  +M++ G  P  VTY  LID       
Sbjct: 270 MVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQR 329

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              + S   E+V +G++     Y  L+  L  E K+ EA DM +        P+ +TY +
Sbjct: 330 GNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTV 389

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ GN   A  +  EM  K I P ++T++S+I  L K+  + +A         +G
Sbjct: 390 LIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERG 449

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +  +IDG       E A  +  EM    V  ++   ++L++G  + GK+E+A 
Sbjct: 450 IDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAE 509

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            L  +M  RG+  DH+++                             P  + YN  I  L
Sbjct: 510 ALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCL 569

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           C   +   AE  L EM S G+ PD  TY ++I   +   K A++
Sbjct: 570 CMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKA 613



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 134/250 (53%), Gaps = 4/250 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+  D   Y + V  +C  G   +A  +LE+M   G+ P  +T+N LI G+   G+
Sbjct: 690 MMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGH 749

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AFS  D+M+  GI P  +T+N L+  L    ++ E+D +L EM ++GI P ++TY+I
Sbjct: 750 LDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDI 809

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY +  N  +A  L+ EM+ KG  P + TY +LI   SK   M +A +LF     +G
Sbjct: 810 LVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRG 869

Query: 181 MLPDIVMFNALIDGHCT--NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +LP    ++ L+ G     NG   R F  LK+M      P + T +++     + G   E
Sbjct: 870 VLPTSCTYDILVSGWSKLRNGTEVRKF--LKDMKEKGFSPSKGTLSSISRAFSKPGMSWE 927

Query: 239 ARRLLDQMKR 248
           ARRLL  + +
Sbjct: 928 ARRLLKNLYK 937



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 112/205 (54%), Gaps = 10/205 (4%)

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D+++YN++++G+   G      +L  EM  +G+    +T  +++  L +  R+  A  L 
Sbjct: 102 DTVSYNVVMSGFSEQGGLAPE-ALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALA 160

Query: 174 ENFLAKGMLP--DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           E  +  G +   D+V +N+L+DG+C  G++E AF++ + M    V  D V YN+L+ G C
Sbjct: 161 EVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLC 220

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           R G+V+ AR ++D MKR G++P+ +       TY   I   C+    D A  L  EMV K
Sbjct: 221 RAGEVDAARDMVDTMKRDGVEPNVV-------TYTMFIVEYCRRNAVDDAFSLYEEMVRK 273

Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
           G+ PD  T  +L+ G+    + +E+
Sbjct: 274 GVLPDVVTLSALVGGLCKDGRFSEA 298


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PDSY Y SFV G C+ G L  A R+   M   G + TA TY  L+ G    G +  A
Sbjct: 102 GLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREA 161

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +    M      P    Y  ++H L    +  EA+ +L+E    G  P+ + YN LI+G
Sbjct: 162 MAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G  + A  + + M      P + TYT LI  L K  ++  A  LF   +  G+ P+
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPN 281

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + ALI G C  G+++ AF LL  M+   + P++ T++ L+   C++ KVEEA+  L 
Sbjct: 282 VVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLG 341

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + ++G+K + +        Y +LI GLCK  + D A+EL+++M+S+G  PD ++Y SLI
Sbjct: 342 SLVKKGVKVNEV-------VYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 305 EGIASVDKAAESS 317
           +G+    K ++++
Sbjct: 395 DGLCRQKKLSQAT 407



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++    PD++ Y + V G+C+ GR EEA  +LE+   NG  P  V YN LIDGYCN G 
Sbjct: 168 MRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGE 227

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + M      P   TY  LIH L    K+  A  +   M E G+ P+ +TY  
Sbjct: 228 MEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTA 287

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+ + AF L   M   G+ P   T++ LI  L K+ ++ EA     + + KG
Sbjct: 288 LIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKG 347

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++ +LIDG C  G I+ A  L+++M      PD  +Y++L+ G CRQ K+ +A 
Sbjct: 348 VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQAT 407

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            +L+ M  +GI+   +++                            NP  +TY   ++  
Sbjct: 408 LMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSY 467

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           C+    + AE ++ +MV +G+ P+  TY +LI G A++   +++ ++
Sbjct: 468 CEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 157/313 (50%), Gaps = 10/313 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            P+  TY   + G+CK G++E A  +  +M E GL P  VTY  LI G CN+G+L+ AF 
Sbjct: 244 SPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFR 303

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               M   G++P   T+++LI  L    K+ EA   L  + +KG+  + + Y  LI+G C
Sbjct: 304 LLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLC 363

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G    A  L  +MI +G  P   +Y+SLI  L +Q ++ +A  + E+ + KG+    V
Sbjct: 364 KTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPV 423

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  +ID        E    +  +M    ++PD VTY   +   C +G++E+A  ++ QM
Sbjct: 424 TYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQM 483

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             RG+ P+ +       TYN LI+G         A      MV KG  P++++Y  L+  
Sbjct: 484 VDRGVFPNLV-------TYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRL 536

Query: 307 IASVDKAAESSNS 319
           +    K + S NS
Sbjct: 537 VV---KKSSSDNS 546



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 167/321 (52%), Gaps = 10/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+  TY + + G C EG L+ A R+L  M+ NGLVP   T++ LID  C +  
Sbjct: 273 MVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREK 332

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F   +VK+G+      Y  LI  L    K+  AD+++++M  +G VPD+ +Y+ 
Sbjct: 333 VEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSS 392

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR     +A  + ++M+ KGIQ + +TYT +I  L ++       ++F+  +A G
Sbjct: 393 LIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATG 452

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +   +  +C  G +E A S++ +M    V P+ VTYNTL+ G    G V +A 
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAF 512

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP---DD 297
              + M  +G KP+  S       Y  L++ + K    D + ++ +    K +     D+
Sbjct: 513 STFEVMVGKGWKPNEDS-------YTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYDE 565

Query: 298 NTYFSLIEGIASVDKAAESSN 318
             +  LI G+      AE S+
Sbjct: 566 IVWKILIYGLLQKGSVAEFSS 586



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ PD  TY  FV   C+EGR+E+A  M+ QM + G+ P  VTYNTLI GY N G 
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP---DSIT 117
           +  AFS  + MV +G  P   +Y +L+  ++ +     + D+ K    K +     D I 
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYDEIV 567

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
           + ILI G  + G+  +  SL   M   G QP+
Sbjct: 568 WKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS 599


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/267 (37%), Positives = 152/267 (56%), Gaps = 7/267 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   TY S V G  KEG ++ A  +  +M E G+ P  VTY +LI+G+C    +++A
Sbjct: 604 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 663

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              RDEM ++G+    + Y+ LI      R M  A D+  E+ E G+ P+ I YN +I+G
Sbjct: 664 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 723

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +    N + A   + +MI+  I   + TYT+LI  L K+ R++ A  L+   L+KG++PD
Sbjct: 724 FRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPD 783

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ F+ L++G C  G +E A  +L+EMDR  + P  + YNTL+ G  R+G ++EA  L D
Sbjct: 784 IITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHD 843

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQG 271
           +M  RG+ PD +       TY+ LI G
Sbjct: 844 EMLDRGLVPDDV-------TYDILING 863



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 41/337 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY--------- 55
           G+ P+  TY   + G C  G +E+AS +  QMK NG+ P+    N+L+ GY         
Sbjct: 395 GLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEA 454

Query: 56  -------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
                                    C  G ++ A S  D MV QG++P   +YN +I   
Sbjct: 455 SKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGH 514

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
             +  M  A  +  +M  + + P+ +TY+ILI+G  + G+++KA  L D+M+   I PT 
Sbjct: 515 CRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTD 574

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            T+ ++I  L K  +M EA    +NFL +G +P  + +N+++DG    GNI+ A ++ +E
Sbjct: 575 FTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYRE 634

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M    V P+ VTY +L++G C+  +++ A +  D+M+ +G++ D  +       Y+ALI 
Sbjct: 635 MCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTA-------YSALID 687

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           G CK ++ + A++L  E++  G++P+   Y S+I G 
Sbjct: 688 GFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGF 724



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 9/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+  +Y   + G C++G ++ AS +   M    L P  VTY+ LIDG   KG+
Sbjct: 495 MVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGD 554

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    D+M+   I PT  T+N +I+ L    +M EA D LK   E+G +P  +TYN 
Sbjct: 555 SEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNS 614

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+ + GN   A +++ EM   G+ P ++TYTSLI    K NR+  A +  +    KG
Sbjct: 615 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 674

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+  ++ALIDG C   ++E A  L  E+  + + P+ + YN+++ G      +E A 
Sbjct: 675 LELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL 734

Query: 241 RLLDQMKRRGIKPDHISFNPTRL-TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
               +M    I        P  L TY  LI GL K      A +L  EM+SKGI PD  T
Sbjct: 735 VWYKKMINDRI--------PCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIIT 786

Query: 300 YFSLIEGIAS 309
           +  L+ G+ +
Sbjct: 787 FHVLVNGLCN 796



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 175/409 (42%), Gaps = 97/409 (23%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D +T    V    KEGR+EEA     + KE G+   A  Y+ +I   C K N
Sbjct: 251 MVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPN 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
             +     +EM ++G +P+ +T+  +I   + +  MVEA  + +EM              
Sbjct: 311 SNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATS 370

Query: 107 ---------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                 E G+ P+ +TY++LI G C  GN +KA  L+ +M   G
Sbjct: 371 LMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNG 430

Query: 146 IQPT----------------------------------MLTYTSLIFVLSKQNRMIEADQ 171
           I P+                                  + TY  ++  L K  +M EA  
Sbjct: 431 IPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACS 490

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L +N + +GM+P++V +N +I GHC  GN++ A S+  +M    + P+ VTY+ L+ G  
Sbjct: 491 LLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNF 550

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PTRL 263
           ++G  E+A  L DQM    I P   +FN                            P+ +
Sbjct: 551 KKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCM 610

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           TYN+++ G  K    D A  + REM   G++P+  TY SLI G    ++
Sbjct: 611 TYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNR 659



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 165/320 (51%), Gaps = 18/320 (5%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K RGV+ D+  Y   +  +CK+        +LE+MKE G VP+  T+ ++I     +GN+
Sbjct: 287 KERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNM 346

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-----DMLKEMGEKGIVPDSI 116
             A   ++EM+  G        NL++   LM+    + +     ++  ++ E G+ P+ +
Sbjct: 347 VEALRLKEEMINCG-----KPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKV 401

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TY++LI G C  GN +KA  L+ +M   GI P++    SL+    K     EA +LF+  
Sbjct: 402 TYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEA 461

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +  G + +I  +N ++   C  G ++ A SLL  M    + P+ V+YN ++ G CR+G +
Sbjct: 462 VDCG-VANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNM 520

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + A  +   M  R +KP+ +       TY+ LI G  K  + + A +L  +M+S  I P 
Sbjct: 521 DMASSVFSDMLARDLKPNVV-------TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPT 573

Query: 297 DNTYFSLIEGIASVDKAAES 316
           D T+ ++I G+  V + +E+
Sbjct: 574 DFTFNTIINGLCKVGQMSEA 593



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 150/325 (46%), Gaps = 27/325 (8%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D   +   ++   +  R+E A      M    ++P     N L+     +  +       
Sbjct: 189 DHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLY 248

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           ++MV +GI     T ++++   L E ++ EA++  +E  E+G+  D+  Y+I+I   C+ 
Sbjct: 249 NKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKK 308

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            N+     L +EM  +G  P+  T+TS+I     Q  M+EA +L E  +  G   ++V+ 
Sbjct: 309 PNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVA 368

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            +L+ G+C  GN++ A +L  ++    + P++VTY+ L+ G C  G +E+A  L  QMK 
Sbjct: 369 TSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKL 428

Query: 249 RGIKPDHISFN---------------------------PTRLTYNALIQGLCKNQEGDLA 281
            GI P   + N                               TYN ++  LCK  + D A
Sbjct: 429 NGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEA 488

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
             LL  MV++G+ P+  +Y  +I G
Sbjct: 489 CSLLDNMVNQGMVPNVVSYNDMILG 513



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 7/271 (2%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            +N L++ Y     +E A    + M+ Q ++P     N+L+  L+    + E  D+  +M
Sbjct: 192 VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKM 251

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
             +GI  D  T ++++    + G  ++A     E   +G++     Y+ +I  + K+   
Sbjct: 252 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 311

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
               +L E    +G +P    F ++I      GN+  A  L +EM       + V   +L
Sbjct: 312 NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSL 371

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           M G C QG ++ A  L +++   G+ P+       ++TY+ LI+G C +   + A EL  
Sbjct: 372 MKGYCAQGNLDSALNLFNKITEDGLFPN-------KVTYSVLIEGCCNSGNIEKASELYT 424

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           +M   GI P      SL+ G        E+S
Sbjct: 425 QMKLNGIPPSVFNVNSLLRGYLKAPLWEEAS 455


>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 376

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  ++M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +R+  A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+  K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNHWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 153/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAKRVYKKIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +  + +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+       +P
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL-------DP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L++GLC +   + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 GVITYSMLMKGLCLDHRVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+ + Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ ++  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M H    P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNHWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A  + K++ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AKRVYKKIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRALSVLNDMIKSGCKPNVHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
 gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 693

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 170/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S  ++P+ + Y SF+S +C  G +  AS + +++ E GL+P  V Y T+IDGYCN G 
Sbjct: 364 IHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGR 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF +   ++K G  P+ +T  +LI        + +A+ + + M  +G+  D +TYN 
Sbjct: 424 TDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNN 483

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY +     K F L DEM   GI P + TY  LI  +  +  + EA+++    + +G
Sbjct: 484 LMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRG 543

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + F  +I G    G+ + AF L   M  +++ PD VT + L+HG C+  ++E+A 
Sbjct: 544 FVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAI 603

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L +++   G+KPD +        YN LI G C   + + A EL+  MV +G+ P+++T+
Sbjct: 604 VLFNKLLDAGLKPDVV-------LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTH 656

Query: 301 FSLIEGI 307
            +L+ G+
Sbjct: 657 HALVLGL 663



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 170/350 (48%), Gaps = 42/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G++PD   +  F+  +CK G L+EA+ +L ++K  G+   +V+ +++IDG+C  G 
Sbjct: 297 MKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGK 356

Query: 61  LEMAF----SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
            E A     SFR       + P    Y+  +  +     M+ A  + +E+ E G++PD +
Sbjct: 357 PEEAIKLIHSFR-------LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCV 409

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            Y  +I+GYC  G   KAF     ++  G  P++ T T LI   S+   + +A+ +F N 
Sbjct: 410 CYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNM 469

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +G+  D+V +N L+ G+     + + F L+ EM    + PD  TYN L+H    +G +
Sbjct: 470 KTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYI 529

Query: 237 EEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNAL 268
           +EA  ++ ++ RRG  P  ++F                             P  +T +AL
Sbjct: 530 DEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSAL 589

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV---DKAAE 315
           + G CK Q  + A  L  +++  G+ PD   Y +LI G  SV   +KA E
Sbjct: 590 LHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACE 639



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 17/316 (5%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P      S +  + +   LE A   +E M   G    A   +  I  YC+ G  +  
Sbjct: 231 GIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKG 290

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +     M   GI P    + + I +L     + EA  +L ++   GI  DS++ + +I+G
Sbjct: 291 WELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDG 350

Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           +C+ G  ++A  L    IH   ++P +  Y+S +  +     M+ A  +F+     G+LP
Sbjct: 351 FCKVGKPEEAIKL----IHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLP 406

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-RQGKVEEARRL 242
           D V +  +IDG+C  G  ++AF     + +   +P  +T +T++ G C R G + +A  +
Sbjct: 407 DCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG-NPPSLTTSTILIGACSRFGSISDAESV 465

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              MK  G+K D +       TYN L+ G  K  + +   EL+ EM S GI+PD  TY  
Sbjct: 466 FRNMKTEGLKLDVV-------TYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNI 518

Query: 303 LIEGIAS---VDKAAE 315
           LI  +     +D+A E
Sbjct: 519 LIHSMVVRGYIDEANE 534



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 3/181 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G+ PD  TY   +  M   G ++EA+ ++ ++   G VP+ + +  +I G+  +G+
Sbjct: 504 MRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGD 563

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF     M    + P   T + L+H     ++M +A  +  ++ + G+ PD + YN 
Sbjct: 564 FQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNT 623

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ---NRMIEADQLFENFL 177
           LI+GYC  G+ +KA  L   M+ +G+ P   T+ +L+  L  +   N    A  L E  +
Sbjct: 624 LIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVLGLEGKRFVNSETHASMLLEEII 683

Query: 178 A 178
            
Sbjct: 684 V 684



 Score = 38.5 bits (88), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E A   ++ M     H +    +  +   C  G  ++   LL  MK  GI+PD ++F  
Sbjct: 252 LELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFT- 310

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                   I  LCK      A  +L ++   GI+ D  +  S+I+G   V K  E+
Sbjct: 311 ------VFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEA 360


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +       CKEG +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM  A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 197 FKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A +++ 
Sbjct: 317 KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I  +CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------TGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 168/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 62  LETKGNQRSDIYVFSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L H    E  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+ P + TY+ LI  L K+++M  A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G + +A
Sbjct: 242 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 HDLIDEMSMKGLKPD-------KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 135/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV PD YTY   ++G+CKE +++ A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 203 MHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM      P  VTYN LM+G
Sbjct: 383 LKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431


>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
 gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 170/307 (55%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S  ++P+ + Y SF+S +C  G +  AS + +++ E GL+P  V Y T+IDGYCN G 
Sbjct: 364 IHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGR 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF +   ++K G  P+ +T  +LI        + +A+ + + M  +G+  D +TYN 
Sbjct: 424 TDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNN 483

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY +     K F L DEM   GI P + TY  LI  +  +  + EA+++    + +G
Sbjct: 484 LMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRG 543

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + F  +I G    G+ + AF L   M  +++ PD VT + L+HG C+  ++E+A 
Sbjct: 544 FVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAI 603

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L +++   G+KPD +        YN LI G C   + + A EL+  MV +G+ P+++T+
Sbjct: 604 VLFNKLLDAGLKPDVV-------LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTH 656

Query: 301 FSLIEGI 307
            +L+ G+
Sbjct: 657 HALVLGL 663



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 170/350 (48%), Gaps = 42/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G++PD   +  F+  +CK G L+EA+ +L ++K  G+   +V+ +++IDG+C  G 
Sbjct: 297 MKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGK 356

Query: 61  LEMAF----SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
            E A     SFR       + P    Y+  +  +     M+ A  + +E+ E G++PD +
Sbjct: 357 PEEAIKLIHSFR-------LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCV 409

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            Y  +I+GYC  G   KAF     ++  G  P++ T T LI   S+   + +A+ +F N 
Sbjct: 410 CYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNM 469

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +G+  D+V +N L+ G+     + + F L+ EM    + PD  TYN L+H    +G +
Sbjct: 470 KTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYI 529

Query: 237 EEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNAL 268
           +EA  ++ ++ RRG  P  ++F                             P  +T +AL
Sbjct: 530 DEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSAL 589

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV---DKAAE 315
           + G CK Q  + A  L  +++  G+ PD   Y +LI G  SV   +KA E
Sbjct: 590 LHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACE 639



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 17/316 (5%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P      S +  + +   LE A   +E M   G    A   +  I  YC+ G  +  
Sbjct: 231 GIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKG 290

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +     M   GI P    + + I +L     + EA  +L ++   GI  DS++ + +I+G
Sbjct: 291 WELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDG 350

Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           +C+ G  ++A  L    IH   ++P +  Y+S +  +     M+ A  +F+     G+LP
Sbjct: 351 FCKVGKPEEAIKL----IHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLP 406

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-RQGKVEEARRL 242
           D V +  +IDG+C  G  ++AF     + +   +P  +T +T++ G C R G + +A  +
Sbjct: 407 DCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG-NPPSLTTSTILIGACSRFGSISDAESV 465

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              MK  G+K D +       TYN L+ G  K  + +   EL+ EM S GI+PD  TY  
Sbjct: 466 FRNMKTEGLKLDVV-------TYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNI 518

Query: 303 LIEGIAS---VDKAAE 315
           LI  +     +D+A E
Sbjct: 519 LIHSMVVRGYIDEANE 534



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E A   ++ M     H +    +  +   C  G  ++   LL  MK  GI+PD ++F  
Sbjct: 252 LELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFT- 310

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                   I  LCK      A  +L ++   GI+ D  +  S+I+G   V K  E+
Sbjct: 311 ------VFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEA 360


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PDSY Y SFV G C+ G L  A R+   M   G + TA TY  L+ G    G +  A
Sbjct: 102 GLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREA 161

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +    M      P    Y  ++H L    +  EA+ +L+E    G  P+ + YN LI+G
Sbjct: 162 MAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G  + A  + + M      P + TYT LI  L K  ++  A  LF   +  G+ P+
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPN 281

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + ALI G C  G+++ AF LL  M+   + P++ T++ L+   C++ KVEEA+  L 
Sbjct: 282 VVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLG 341

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + ++G+K + +        Y +LI GLCK  + D A+EL+++M+S+G  PD ++Y SLI
Sbjct: 342 SLVKKGVKVNEV-------VYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 305 EGIASVDKAAESS 317
           +G+    K ++++
Sbjct: 395 DGLCRQKKLSQAT 407



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 28/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++    PD++ Y + V G+C+ GR EEA  +LE+   NG  P  V YN LIDGYCN G 
Sbjct: 168 MRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGE 227

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + M      P   TY  LIH L    K+  A  +   M E G+ P+ +TY  
Sbjct: 228 MEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTA 287

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+ + AF L   M   G+ P   T++ LI  L K+ ++ EA     + + KG
Sbjct: 288 LIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKG 347

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V++ +LIDG C  G I+ A  L+++M      PD  +Y++L+ G CRQ K+ +A 
Sbjct: 348 VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQAT 407

Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
            +L+ M  +GI+   +++                            NP  +TY   ++  
Sbjct: 408 LMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSY 467

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           C+    + AE ++ +MV +G+ P+  TY +LI G A++   +++ ++
Sbjct: 468 CEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFST 514



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 158/319 (49%), Gaps = 10/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+  TY   + G+CK G++E A  +  +M E GL P  VTY  LI G CN+G+
Sbjct: 238 MDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGH 297

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF     M   G++P   T+++LI  L    K+ EA   L  + +KG+  + + Y  
Sbjct: 298 LQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L  +MI +G  P   +Y+SLI  L +Q ++ +A  + E+ + KG
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +    V +  +ID        E    +  +M    ++PD VTY   +   C +G++E+A 
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ QM  RG+ P+ +       TYN LI+G         A      MV KG  P++++Y
Sbjct: 478 SMIVQMVDRGVFPNLV-------TYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSY 530

Query: 301 FSLIEGIASVDKAAESSNS 319
             L+  +    K + S NS
Sbjct: 531 TVLLRLVV---KKSSSDNS 546



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 168/330 (50%), Gaps = 19/330 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+  TY + + G C EG L+ A R+L  M+ NGLVP   T++ LID  C +  
Sbjct: 273 MVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREK 332

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F   +VK+G+      Y  LI  L    K+  AD+++++M  +G VPD+ +Y+ 
Sbjct: 333 VEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSS 392

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G CR     +A  + ++M+ KGIQ + +TYT +I  L ++       ++F+  +A G
Sbjct: 393 LIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATG 452

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +   +  +C  G +E A S++ +M    V P+ VTYNTL+ G    G V +A 
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAF 512

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA------------EELLREM 288
              + M  +G KP+  S       Y  L++ + K    D +            + LL ++
Sbjct: 513 STFEVMVGKGWKPNEDS-------YTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDI 565

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             + +    + Y   I  +  VD+  E+ +
Sbjct: 566 TERQLPLAADIYSCFIRCLCRVDRLEEAKH 595



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 136/283 (48%), Gaps = 20/283 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ PD  TY  FV   C+EGR+E+A  M+ QM + G+ P  VTYNTLI GY N G 
Sbjct: 448 MIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGL 507

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK--EMGEKGIVPDSIT- 117
           +  AFS  + MV +G  P   +Y +L+  ++ +     + D+ K  +M +  ++ + IT 
Sbjct: 508 VSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITE 567

Query: 118 ---------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
                    Y+  I   CR    ++A      M +  + P+   YTS+I    +   + +
Sbjct: 568 RQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTD 627

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  L ++    G LP +  +  +I   C  GN   A  +  ++   + + DE+ +  L++
Sbjct: 628 ALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIY 687

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
           G  ++G V E   LL  MK  G +P +        T NA+I G
Sbjct: 688 GLLQKGSVAEFSSLLSVMKEHGYQPSN--------TINAMITG 722


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTLI+GY   G+L+  
Sbjct: 131 GYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G  P   TY++LI+ L  E K+ EA+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+      A  ++ +M+ +G+ P ++TY +LI+ L K+  + +   L +  +  G+ PD
Sbjct: 251 HCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E A  L  +M +  +  D+V Y  L+   CR+G+  +A ++L 
Sbjct: 311 KISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD+        TY  +I   CK ++   A +LLREM   G  P
Sbjct: 371 EMLSVGLKPDNG-------TYTMIINEFCKKRDSKTASKLLREMQRDGPVP 414



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 167/333 (50%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   +    + G + +A +     K++ +     T   +++      
Sbjct: 56  LETKGTQISDFYVFSGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFR 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+     E +M  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LINGY + G+  + F L   M   G QP + TY+ LI  L K+ ++ EA++LF   L  
Sbjct: 176 TLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LI GHC N  ++ A  + K+M    + PD +TYNTL++G C++G++++ 
Sbjct: 236 GLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQV 295

Query: 240 RRLLDQMKRRGIKPDHISFN-------------------------PTRL---TYNALIQG 271
             L+D+M   G+KPD IS+                            RL    Y ALI  
Sbjct: 296 HDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISC 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ PD+ TY  +I
Sbjct: 356 LCREGRAGDAEKMLREMLSVGLKPDNGTYTMII 388



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 131/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G QPD YTY   ++G+CKEG+L+EA+ +  +M +NGLVP  VT+ TLI G+C    
Sbjct: 197 MHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEK 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ QG+ P   TYN LI+ L  + ++ +  D++ EM   G+ PD I+Y  
Sbjct: 257 VDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A  L ++MI + I+   + YT+LI  L ++ R  +A+++    L+ G
Sbjct: 317 LIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C   + + A  LL+EM R    P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418


>gi|255660992|gb|ACU25665.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 376

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G + ++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSGFVEDSITYGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN L++ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDKAVSVLNGMIKSGCKPNAHVYNTLVNGLVGVSKFEDAIRVFREMGTVHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMLNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDSAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSKG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M + G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGFCKNGYINKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  + +A  +    +  G  P+  ++N L++G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLVNGLVGVSK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  +   P  +TYNTL++G C+     EA  L+ ++  +G+       NP
Sbjct: 180 FEDAIRVFREMGTVHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L++GLC + + + A +L  ++ SKG  PD      LI G+ SV K
Sbjct: 233 GVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMLNILIHGLCSVGK 284



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 112/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + V+G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLVNGLVGVSKFEDAIRVFREMGTVHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+  A  +  ++  KG  PD    NI
Sbjct: 215 FGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMLNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 32/252 (12%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
            A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  KG   ++ ++  ++
Sbjct: 8   SAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSKG-NRSVSSFNIMM 66

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L    ++ E   ++E     G + D + +  L+ G C NG I ++  +L+  ++    
Sbjct: 67  RGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGFCKNGYINKSLHVLEMAEQKGGV 126

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------------ 259
            D   Y+ +++G C++  +++A  +L+ M + G KP+   +N                  
Sbjct: 127 LDAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLVNGLVGVSKFEDAIRV 186

Query: 260 ----------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA- 308
                     PT +TYN LI GLCKN+    A  L++E++ KG+ P   TY  L++G+  
Sbjct: 187 FREMGTVHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCL 246

Query: 309 --SVDKAAESSN 318
              V++A +  N
Sbjct: 247 DHKVERALQLWN 258


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 163/308 (52%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +PD   Y + V  +CK+  + EA  +  +MK  G++PT VTY +LI G  N G 
Sbjct: 222 MKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGR 281

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   +EM    IMP    +++LI  +  E ++ EA  +LK M E G+ PD  TYN 
Sbjct: 282 WKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNT 341

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC      +A  + + MI KG  P + +++ L+    K  R+ EA QLF+    +G
Sbjct: 342 LMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRG 401

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V +N LI G C       A  L K+M      P+ VTY+ L+    +QG +++A 
Sbjct: 402 LIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAM 461

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M+  G+KPD +       TYN +I G+CK  +   A EL  E+  KG+ P++   
Sbjct: 462 GLFRAMENSGLKPDLV-------TYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVC 514

Query: 301 FSLIEGIA 308
              I+G+ 
Sbjct: 515 TPTIDGVC 522



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 164/295 (55%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+ P   TY S + G+   GR +EA  +L +MK   ++P  V ++ LID  C +G 
Sbjct: 257 MKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGE 316

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P  +TYN L++   +  ++VEA  + + M  KG +PD  +++I
Sbjct: 317 VSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSI 376

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+     +A  L DEM H+G+ P  ++Y +LI  L +  R +EA++LF++  + G
Sbjct: 377 LVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNG 436

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V ++ L+D     G +++A  L + M+   + PD VTYN ++ G C+ GK ++AR
Sbjct: 437 YPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDAR 496

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            L  ++  +G++P++    PT       I G+CK    D A +  R+M     +P
Sbjct: 497 ELFAELSVKGLQPNNWVCTPT-------IDGVCKGGLLDEAHKAFRQMEKDDCSP 544



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D  +    ++  C+   ++    +L ++ + GL P  +T++TLI+G+C +G 
Sbjct: 117 MEMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGK 176

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D MV +G  P   +Y+++I  L    K  E   +L+ M   G  PD + YN 
Sbjct: 177 IGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNT 236

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C+     +A  +  +M   GI PT++TYTSLI  L    R  EA  L        
Sbjct: 237 IVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGN 296

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V F+ LID  C  G +  A  +LK M  M V PD  TYNTLM+G C + +V EAR
Sbjct: 297 IMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEAR 356

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ + M  +G  PD  SF       + L+ G CK +  D A++L  EM  +G+ PD  +Y
Sbjct: 357 KVFEVMISKGRMPDVFSF-------SILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSY 409

Query: 301 FSLIEGIASVDKAAES 316
            +LI G+    +  E+
Sbjct: 410 NTLISGLCQARRPLEA 425



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG +P+ ++Y   + G+C+ G+  E  ++LE MK  G  P  V YNT++D  C    
Sbjct: 187 MVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRL 246

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M   GI+PT  TY  LIH L    +  EA  +L EM    I+PD + +++
Sbjct: 247 VNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSV 306

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G   +A  +   M   G++P + TY +L+     +  ++EA ++FE  ++KG
Sbjct: 307 LIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKG 366

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+  F+ L++G+C    I+ A  L  EM    + PD V+YNTL+ G C+  +  EA 
Sbjct: 367 RMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAE 426

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   G       + P  +TY+ L+  L K    D A  L R M + G+ PD  TY
Sbjct: 427 ELFKDMHSNG-------YPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTY 479

Query: 301 FSLIEGIASVDKAAES 316
             +I+G+    K  ++
Sbjct: 480 NIMIDGMCKYGKFKDA 495



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 118/224 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PD  TY + ++G C    + EA ++ E M   G +P   +++ L++GYC    
Sbjct: 327 MTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKR 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    DEM  +G++P   +YN LI  L   R+ +EA+++ K+M   G  P+ +TY+I
Sbjct: 387 IDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSI 446

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++   + G   +A  L   M + G++P ++TY  +I  + K  +  +A +LF     KG
Sbjct: 447 LLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKG 506

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           + P+  +    IDG C  G ++ A    ++M++    P +   N
Sbjct: 507 LQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCIN 550



 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 125/275 (45%), Gaps = 28/275 (10%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N+  A S  + MV    +P+   +  L   L+  +       + K+M   GI  D ++  
Sbjct: 71  NINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLT 130

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ILIN +CR  +    FS+  ++I  G++P ++T+++LI     + ++  A +LF+  +A+
Sbjct: 131 ILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVAR 190

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P++  ++ +I G C  G       LL+ M  +   PD V YNT++   C+   V EA
Sbjct: 191 GYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEA 250

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             +  +MK  GI P  +++                             P  + ++ LI  
Sbjct: 251 VHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDI 310

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +CK  E   A  +L+ M   G+ PD  TY +L+ G
Sbjct: 311 MCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNG 345


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 170/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD  +Y   + G   EGR  + + +   M + G+V     +N LI  +  +G 
Sbjct: 395 MTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGM 454

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM  QG+ P   TY+ LI       ++ +A +   +M   G+ P+++ Y+ 
Sbjct: 455 MDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHS 514

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G+C  G+  KA  L  EM+ KGI +P ++ ++S+I  L  + R+++A  +F   +  
Sbjct: 515 LIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHI 574

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P IV FN+LIDG+C  G +E+AF +L  M  + + PD VTYNTL+ G C+ GK+++ 
Sbjct: 575 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDG 634

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L  +M  + +KP       T +TY+ ++ GL        A+++  EM+  G   D +T
Sbjct: 635 LILFREMLHKKVKP-------TTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDT 687

Query: 300 YFSLIEGIASVDKAAES 316
           Y  L++G+   D   E+
Sbjct: 688 YKILLKGLCRNDLTDEA 704



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 176/343 (51%), Gaps = 48/343 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P++ +Y + +  +C + R +EA  M+++M + G    P  V++NT+I G+  +
Sbjct: 218 MSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQ 277

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +  A +  +EMV++G+ P   TYN ++  L   R M +A+ +L++M +KG+ PD +TY
Sbjct: 278 GEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTY 337

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             +I+GY   G+ K++  +  +M  KG+ P ++T+ S +  L K  R  +A+++F+    
Sbjct: 338 TAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTT 397

Query: 179 KGMLPDIV-----------------------------------MFNALIDGHCTNGNIER 203
           KG +PD+V                                    FN LI  H   G ++ 
Sbjct: 398 KGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDE 457

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  +  EM    V PD VTY+TL+   CR G++ +A     QM   G++P+ +       
Sbjct: 458 AMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTV------- 510

Query: 264 TYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLI 304
            Y++LI G C    GDL  A+EL+ EM+SKGI   +  +FS I
Sbjct: 511 VYHSLIHGFC--MHGDLVKAKELVSEMMSKGIPRPNIVFFSSI 551



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ P   T+ SF+S +CK GR ++A  + + M   G +P  V+Y+ L+ GY  +G 
Sbjct: 360 MTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGR 419

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                +    M  +GI+     +N+LI        M EA  +  EM  +G+ PD +TY+ 
Sbjct: 420 FADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYST 479

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +CR G    A     +MI  G++P  + Y SLI        +++A +L    ++KG
Sbjct: 480 LISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKG 539

Query: 181 M-LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  P+IV F+++I   C  G +  A  +   +  +   P  VT+N+L+ G C  GK+E+A
Sbjct: 540 IPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 599

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +LD M   GI+PD +       TYN L+ G CK+ + D    L REM+ K + P   T
Sbjct: 600 FGVLDAMVSVGIEPDVV-------TYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVT 652

Query: 300 YFSLIEGI 307
           Y  +++G+
Sbjct: 653 YSIVLDGL 660



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 170/307 (55%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+PD  TY + + G    G  +E+++M  +M   GL+P  VT+N+ +   C  G 
Sbjct: 325 MVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGR 384

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A      M  +G MP   +Y++L+H    E +  + +++   M +KGIV +   +NI
Sbjct: 385 SKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNI 444

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   +A  +  EM  +G++P ++TY++LI    +  R+ +A + F   ++ G
Sbjct: 445 LISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIG 504

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV-HPDEVTYNTLMHGRCRQGKVEEA 239
           + P+ V++++LI G C +G++ +A  L+ EM    +  P+ V +++++H  C +G+V +A
Sbjct: 505 LEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDA 564

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             + + +        HI   PT +T+N+LI G C   + + A  +L  MVS GI PD  T
Sbjct: 565 HDVFNLVI-------HIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVT 617

Query: 300 YFSLIEG 306
           Y +L+ G
Sbjct: 618 YNTLVSG 624



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 146/331 (44%), Gaps = 43/331 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+PD  TY + +S  C+ GRL +A     QM   GL P  V Y++LI G+C  G+
Sbjct: 465 MQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGD 524

Query: 61  LEMAFSFRDEMVKQGI------------------------------------MPTASTYN 84
           L  A     EM+ +GI                                     PT  T+N
Sbjct: 525 LVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFN 584

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            LI    +  KM +A  +L  M   GI PD +TYN L++GYC+ G       L  EM+HK
Sbjct: 585 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHK 644

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            ++PT +TY+ ++  L    R   A ++F   +  G   DI  +  L+ G C N   + A
Sbjct: 645 KVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEA 704

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +L  ++  M    D    NT+++   +  + EEA  L   +   G+ P+ +S      T
Sbjct: 705 ITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPN-VS------T 757

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           Y  +I  L K    + A+ +   M   G  P
Sbjct: 758 YGVMIHNLLKEGSVEEADTMFSSMEKSGCAP 788



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 144/282 (51%), Gaps = 11/282 (3%)

Query: 41  LVPTAV-TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99
           + P +V TY  L+D  C     ++  +F   +++ G+       N  +  L   ++  EA
Sbjct: 151 VAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEA 210

Query: 100 DD-MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSL 156
            D +L  M + G VP++I+YN +I   C    +++A  +   M  +G    P ++++ ++
Sbjct: 211 VDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTV 270

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I    KQ  + +A  L    + KG+ PD+V +N+++D  C    +++A  +L++M    V
Sbjct: 271 IHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGV 330

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD +TY  ++HG    G  +E+ ++  +M  +G+ P  +       T+N+ +  LCK+ 
Sbjct: 331 EPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIV-------TFNSFMSSLCKHG 383

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               AEE+ + M +KG  PD  +Y  L+ G A+  + A+ +N
Sbjct: 384 RSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNN 425



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 113/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P   T+ S + G C  G++E+A  +L+ M   G+ P  VTYNTL+ GYC  G ++  
Sbjct: 575 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDG 634

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM+ + + PT  TY++++  L    +   A  M  EM + G   D  TY IL+ G
Sbjct: 635 LILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG 694

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A +L  ++     +  +    ++I  L K  R  EA+ LF      G++P+
Sbjct: 695 LCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPN 754

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  +  +I      G++E A ++   M++    P     N ++    ++G + +A
Sbjct: 755 VSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 809



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 109/243 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PD  TY + VSG CK G++++   +  +M    + PT VTY+ ++DG  + G 
Sbjct: 606 MVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGR 665

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+  G      TY +L+  L       EA  +  ++G      D    N 
Sbjct: 666 TSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNT 725

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN   +    ++A  L   +   G+ P + TY  +I  L K+  + EAD +F +    G
Sbjct: 726 VINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSG 785

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P   + N +I      G+I +A   + ++D   +  +  T + LM     +GK  E  
Sbjct: 786 CAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHREQI 845

Query: 241 RLL 243
           + L
Sbjct: 846 KFL 848


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/293 (35%), Positives = 158/293 (53%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  + PD YT+   V   CKEGR++EA   L  M + G+ P  VTYN+L+DGYC    
Sbjct: 271 MTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNE 330

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + MA S  + M  +G+  T  +YN++I+     + + +A  + KEM  K I P+ ITYN 
Sbjct: 331 VNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNS 390

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L D M  +G QP ++TY+S++  L K + + +A  L      +G
Sbjct: 391 LIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQG 450

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +  LIDG C  G +E A ++ +++     +    TY  ++ G C  G  +EA 
Sbjct: 451 IRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEAL 510

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            LL +MK     PD I       TY  +I  L    E D AE+LLREM+++G+
Sbjct: 511 SLLSKMKDNSCIPDAI-------TYEIIICSLFDKDENDKAEKLLREMITRGL 556



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 160/300 (53%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SR +  +  TY + +SG C  G+L++A  +  +M    + P   T+N L+D +C +G 
Sbjct: 236 MVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGR 295

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    M+KQGI P   TYN L+    +  ++  A  +L  M  +G+     +YNI
Sbjct: 296 VKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNI 355

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     +A  L  EM HK I P ++TY SLI  L K  R+  A +L +    +G
Sbjct: 356 VINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRG 415

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI+ +++++D  C N  +++A +LL ++    + P+  TY  L+ G C+ G++E+AR
Sbjct: 416 QQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDAR 475

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +  +G       +N T  TY  +IQG C +   D A  LL +M      PD  TY
Sbjct: 476 NIFEDLLVKG-------YNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITY 528



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 160/304 (52%), Gaps = 7/304 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQ D   Y + +  MCK+  + +A  +  +M    +    VTY+ LI G+C  G L+ A 
Sbjct: 206 VQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAI 265

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              ++M  + I P   T+N+L+     E ++ EA + L  M ++GI PD +TYN L++GY
Sbjct: 266 GLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGY 325

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C       A S+ + M H+G+  T+ +Y  +I    K   + +A +LF+    K + P++
Sbjct: 326 CLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNV 385

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           + +N+LIDG C +G I  A  L+  M      PD +TY++++   C+   V++A  LL +
Sbjct: 386 ITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIK 445

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +K +GI+P+         TY  LI GLCK    + A  +  +++ KG     NTY  +I+
Sbjct: 446 LKDQGIRPN-------MYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQ 498

Query: 306 GIAS 309
           G  S
Sbjct: 499 GFCS 502



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 165/314 (52%), Gaps = 7/314 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   D  +YG+ ++G+CK G    A  +L ++    +    V Y+T+ID  C   N+  A
Sbjct: 170 GFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EMV + I     TY+ LI    +  K+ +A  +  +M  + I PD  T+NIL++ 
Sbjct: 230 FDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDA 289

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G  K+A +    M+ +GI+P ++TY SL+      N +  A  +      +G+   
Sbjct: 290 FCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTAT 349

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +N +I+G C    +++A  L KEM   ++ P+ +TYN+L+ G C+ G++  A  L+D
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELID 409

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  RG +PD I       TY++++  LCKN   D A  LL ++  +GI P+  TY  LI
Sbjct: 410 LMHDRGQQPDII-------TYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILI 462

Query: 305 EGIASVDKAAESSN 318
           +G+    +  ++ N
Sbjct: 463 DGLCKGGRLEDARN 476



 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 162/308 (52%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++P+   +   ++  C+ G +  A  +L ++ + G  P  +T NT I G+C KG 
Sbjct: 96  MEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQ 155

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +F D++V  G      +Y  LI+ L    +   A ++L+ +  K +  D + Y+ 
Sbjct: 156 IHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYST 215

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+  N   AF L+ EM+ + I   ++TY++LI       ++ +A  LF    ++ 
Sbjct: 216 IIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSEN 275

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  FN L+D  C  G ++ A + L  M +  + PD VTYN+LM G C   +V  A+
Sbjct: 276 INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAK 335

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L+ M  RG+         T  +YN +I G CK +  D A +L +EM  K I P+  TY
Sbjct: 336 SILNTMSHRGV-------TATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITY 388

Query: 301 FSLIEGIA 308
            SLI+G+ 
Sbjct: 389 NSLIDGLC 396



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 42/292 (14%)

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           N  ++  A S  + +++Q   P    +  ++  L+  +       + ++M  +GI P+ +
Sbjct: 47  NNNDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFV 106

Query: 117 TYNILINGYCRCGNAKKAFSL-----------------------------------HDEM 141
            +NILIN +C+ G    AFS+                                   HD++
Sbjct: 107 NFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKL 166

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +  G     ++Y +LI  L K      A +L      K +  D+VM++ +ID  C + N+
Sbjct: 167 VALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNV 226

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
             AF L  EM   ++  + VTY+ L+ G C  GK+++A  L ++M    I PD       
Sbjct: 227 NDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPD------- 279

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
             T+N L+   CK      A+  L  M+ +GI PD  TY SL++G   V++ 
Sbjct: 280 VYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEV 331



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 129/270 (47%), Gaps = 12/270 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QPD  TY S +  +CK   +++A  +L ++K+ G+ P   TY  LIDG C  G 
Sbjct: 411 MHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGR 470

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +  ++++ +G   T +TY ++I          EA  +L +M +   +PD+ITY I
Sbjct: 471 LEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEI 530

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY--TSLIFV------LSKQNRMIEADQL 172
           +I          KA  L  EMI +G+  + L Y   SL F+      L+  +    + Q 
Sbjct: 531 IICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQE 590

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK---EMDRMKVHPDEVTYNTLMHG 229
             N+ AK +L  I     L   +  + ++E    ++    +  +     D  TY  ++ G
Sbjct: 591 SGNW-AKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQG 649

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            C  G  +E+  LL +M+  G  PD ++++
Sbjct: 650 FCSHGLFDESLALLSKMEVNGCIPDAVTYD 679


>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 502

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 186/353 (52%), Gaps = 37/353 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++P  +TY + ++G+CKEG  E A  +L++M   G  P A T+N ++     K +
Sbjct: 132 MEAKGLKPGLFTYNALINGLCKEGGYESAKCVLDKMLGVGFCPDAATFNPVLVESFRKED 191

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM++ G++P   +++ +I       ++  A    ++M   G+VPD++ Y I
Sbjct: 192 VWEAERVFNEMLQCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTI 251

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYCR  +   A  + +EM+ +     ++TY +L+  L +   + +AD+LF+  + +G
Sbjct: 252 LINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK------EMDRMK----------VHPDEVTYN 224
           + PD      LI G+C +GN+ +A SL +      EM++ K          + P  ++++
Sbjct: 312 VFPDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEMEKAKELWRDMISREIFPHYISFS 371

Query: 225 TLMHGRC--------------RQGKVEEARRLLDQMKRRGIKPDHISFN-------PTRL 263
            L++G C              R G V +A   L+ M   G+ PD I++N       P  +
Sbjct: 372 ILINGFCSLGLVSESLIKGYLRAGNVSKANDFLNTMVSEGVPPDCITYNTLINRLLPDLV 431

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           TYNA++ G  ++     AE +L +M+ KGI PD +TY S+I G  S D   E+
Sbjct: 432 TYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSVINGYVSKDNMKEA 484



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 146/294 (49%), Gaps = 44/294 (14%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV PD  ++ S +    + G L  A    E+MK  GLVP  V Y  LI+GYC   ++  A
Sbjct: 206 GVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNNDVSGA 265

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              R+EMV++  +    TYN L++ L   + + +AD++ KEM E+G+ PD  T   LI+G
Sbjct: 266 LKVRNEMVERSCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHG 325

Query: 125 YCRCGNAKKAFSLHD----------------EMIHKGIQPTMLTYTSLI----------- 157
           YC+ GN  KA SL +                +MI + I P  ++++ LI           
Sbjct: 326 YCKDGNMTKALSLFETITLRSEMEKAKELWRDMISREIFPHYISFSILINGFCSLGLVSE 385

Query: 158 -----------------FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
                            F+ +  +  +  D +  N L   +LPD+V +NA++ G   +G 
Sbjct: 386 SLIKGYLRAGNVSKANDFLNTMVSEGVPPDCITYNTLINRLLPDLVTYNAILGGFSRHGR 445

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           ++ A  +L +M    ++PD+ TY ++++G   +  ++EA R+ D+M +RG  PD
Sbjct: 446 MQEAEMVLHKMIDKGINPDKSTYTSVINGYVSKDNMKEAFRVHDEMLQRGFVPD 499



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 44/192 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEG----------------RLEEASRMLEQMKENGLVPT 44
           M  RGV PD YT  + + G CK+G                 +E+A  +   M    + P 
Sbjct: 307 MVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETITLRSEMEKAKELWRDMISREIFPH 366

Query: 45  AVTYNTLIDGYCN--------------KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
            ++++ LI+G+C+               GN+  A  F + MV +G+ P   TYN LI+ L
Sbjct: 367 YISFSILINGFCSLGLVSESLIKGYLRAGNVSKANDFLNTMVSEGVPPDCITYNTLINRL 426

Query: 91  LMER--------------KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           L +               +M EA+ +L +M +KGI PD  TY  +INGY    N K+AF 
Sbjct: 427 LPDLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSVINGYVSKDNMKEAFR 486

Query: 137 LHDEMIHKGIQP 148
           +HDEM+ +G  P
Sbjct: 487 VHDEMLQRGFVP 498


>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 376

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L    K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G I+ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKIQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+ + Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKIQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHV--------YNTLINGLAGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 159/307 (51%), Gaps = 6/307 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD+  Y + + G+ K G  +EA ++L+ M     VPT VTY  L++  C  G 
Sbjct: 251 MEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGT 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      M   G  P +  Y  LIH      +M EA  +  EM E G  PD IT+ +
Sbjct: 311 LERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTV 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ GN ++A    +EM+  G +P ++TYT++I  LSK  R+  A ++ +  +A G
Sbjct: 371 MIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V +  L+DG C  G ++ A  LL E+D+    P+   Y++L+ G C  G VE   
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENT- 489

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             LD +  +  K    + +P      ++I GLCK    D A  + + MVS+G  PD  TY
Sbjct: 490 --LDDLFEQS-KAAAENLDPGLCC--SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTY 544

Query: 301 FSLIEGI 307
             LI G+
Sbjct: 545 NILINGL 551



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 162/319 (50%), Gaps = 8/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+++++   +    +  R ++A    E MK     P   T+  L+D  C  G 
Sbjct: 145 MLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGM 204

Query: 61  LEMAFSFRDEMVKQGIMPT-ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            E AF    EM+  G +P   + +  ++  LL  +++ EA ++  +M + G  PD+I YN
Sbjct: 205 DEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYN 264

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+G  + G+A++A  + D M+ K   PT +TY  L+  L K   +  A++LF    A 
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAAS 324

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+ V++ +LI G   +G ++ A SL  EM      PD +T+  ++ G C+ G  E+A
Sbjct: 325 GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQA 384

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +  ++M R G KP+ +       TY  +IQGL K      A  +++ M++ G  PD  T
Sbjct: 385 AKSFEEMMRGGCKPNVV-------TYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVT 437

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y  L++G   + +  E++ 
Sbjct: 438 YICLLDGFCKLGRLDEAAQ 456



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 157/304 (51%), Gaps = 10/304 (3%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEMAFSFRDEMV 72
           S + G+CK GRL+EA R+ ++M   G  P A TYN LI+G C   +  +E AF+   ++ 
Sbjct: 511 SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
             G +P A TY  L   L    ++  A  ML+E   +G   D + Y  L  G C  G   
Sbjct: 571 MVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A SL  EM+ +G  P    Y  +I  L K  ++ +A + F+  + KG  P +  + AL+
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALV 690

Query: 193 DGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
              C  GN++ AF   + M  R ++    + Y+ L+HG C+  KV+ A +L + M  RG 
Sbjct: 691 QALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
                   PT +T  +L  GL ++ + + A+ELL+EM + G  P   T+ ++++G+   D
Sbjct: 751 V-------PTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSD 803

Query: 312 KAAE 315
           ++ +
Sbjct: 804 ESGK 807



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 149/308 (48%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNT-LIDGYCNKG 59
           MK +  +PD +T+   V  +CK G  E+A  +  +M   G VP     +T ++       
Sbjct: 180 MKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAK 239

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A     +M K G  P A  YN +I  L       EA  +L  M  K  VP  +TY 
Sbjct: 240 RVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYG 299

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL+N  C+ G  ++A  L   M   G +P  + YTSLI   +K  RM EA  LF+  +  
Sbjct: 300 ILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEA 359

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD++    +IDG C +GN E+A    +EM R    P+ VTY T++ G  + G+V  A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            R++  M   G  PD +       TY  L+ G CK    D A +LL E+     +P+   
Sbjct: 420 FRIMKGMIAHGCFPDSV-------TYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472

Query: 300 YFSLIEGI 307
           Y SL++G+
Sbjct: 473 YSSLVKGL 480



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 169/350 (48%), Gaps = 44/350 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PDS TY   + G CK GRL+EA+++L+++ +    P    Y++L+ G C+ G+
Sbjct: 426 MIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGS 485

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNL-------LIHELLMERKMVEADDMLKEMGEKGIVP 113
           +E      D++ +Q     A+  NL       +I  L    ++ EA  + + M  +G  P
Sbjct: 486 VENTL---DDLFEQS---KAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKP 539

Query: 114 DSITYNILINGYCRC--GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
           D+ TYNILING CR      ++AF+L  ++   G  P  +TYT L   L K   +  A +
Sbjct: 540 DATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVK 599

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           + E   ++G   D+V + AL  G C  G ++RA SL +EM R    PD   Y  +++G  
Sbjct: 600 MLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNP-----------------------------TR 262
           +  K+E+A +  D+M  +G KP   ++                               + 
Sbjct: 660 KGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSV 719

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + Y+ALI G CK  + D A +L  +M+S+G  P   T  SL +G+    K
Sbjct: 720 MIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGK 769



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 10/290 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK--EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           M S G +PD+ TY   ++G+C+  E R+E A  +L  ++  G +P AVTY  L  G C  
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKI 591

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G ++ A    +E   +G       Y  L   L  + ++  A  + +EM  +G  PD+  Y
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAY 651

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             +ING  +    + A    DEMI KG +PT+ TYT+L+  L     + EA   FE  LA
Sbjct: 652 CCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLA 711

Query: 179 KG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           +G ++  +++++ALI G C    ++ A  L ++M      P  VT  +L  G  R GK E
Sbjct: 712 RGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTE 771

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           +A+ LL +M   G  P H +      T+ A++ GL K+ E     +L++E
Sbjct: 772 KAQELLQEMAAGG-SPPHAA------TFTAILDGLRKSDESGKLLKLVQE 814



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 145/316 (45%), Gaps = 43/316 (13%)

Query: 37  KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           ++ G      TYN L++    + N    ++  +EM+K GI P   ++N+LI      R+ 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF----------------SLHDE 140
            +A    + M  K   PD  T+ IL++  C+ G  +KAF                +LH  
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTA 230

Query: 141 MIHK--------------------GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           M+                      G  P  + Y ++I  L+K     EA ++ +N LAK 
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA 290

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  V +  L++  C  G +ERA  L + M      P+ V Y +L+HG  + G+++EA 
Sbjct: 291 CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEAC 350

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M   G +PD I       T+  +I GLCK+   + A +   EM+  G  P+  TY
Sbjct: 351 SLFDEMVEAGYRPDVI-------THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403

Query: 301 FSLIEGIASVDKAAES 316
            ++I+G++ + + A +
Sbjct: 404 TTIIQGLSKIGRVANA 419



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 8/253 (3%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           FR    + G      TYN L++ L+ E+   +   + +EM + GI P++ ++NILI  + 
Sbjct: 106 FRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFA 165

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PDI 185
           R   A  A +  + M  K  +P + T+  L+  L K     +A ++F   +A G + PD 
Sbjct: 166 RTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDR 225

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            +  A++        ++ A  +  +M++    PD + YNT++ G  + G  +EA ++LD 
Sbjct: 226 ALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDN 285

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +          PT +TY  L+  LCK    + AEEL R M + G  P+   Y SLI 
Sbjct: 286 MLAKACV-------PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIH 338

Query: 306 GIASVDKAAESSN 318
           G A   +  E+ +
Sbjct: 339 GFAKSGRMKEACS 351


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 180/353 (50%), Gaps = 51/353 (14%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + ++G  +EG++++A  +  QM + G+ P  VTYNT+IDG C    ++ A + 
Sbjct: 302 PDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAV 361

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+ +G+ P+  TYN LIH  L   K  E   +L+EM    + PD   Y +L++  C+
Sbjct: 362 FQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCK 421

Query: 128 CGNAKKAFSLHDEMIHKGIQP---------------------TMLTYTSLIFVLSKQ--- 163
            G   +A ++ D +I KGI+P                      ++ Y +LI  L K    
Sbjct: 422 NGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRV 481

Query: 164 -------NRMI-------------EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
                  N+MI             +A++L    L +G+  D+V+FN L+   C  G +  
Sbjct: 482 DDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVME 541

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  L++ M R+ V PD ++YNTL+ G C  G+ +EA +LLD M   G+KP+         
Sbjct: 542 AQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNE-------F 594

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           TYN L+ G CK +  D A  LLREM+  G TPD  TY +++ G+    + +E+
Sbjct: 595 TYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEA 647



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 177/414 (42%), Gaps = 107/414 (25%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY + + G+CK   ++ A  + +QM + G+ P+  TYN LI GY + G 
Sbjct: 330 MIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGK 389

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL--------------MERKMVEADDMLKE- 105
            +      +EM    + P    Y LL+  L               + RK ++ D M+ E 
Sbjct: 390 WKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEA 449

Query: 106 ------MGEKGIVPDSITYNILINGYCRCGNA-----------------------KKAFS 136
                 M ++G+ P+ + Y  LI+  C+ G                         +KA  
Sbjct: 450 VCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEE 509

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           L  EM+ +GI+  ++ + +L+  L ++ R++EA +L E  L  G+ PD++ +N L+DGHC
Sbjct: 510 LVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHC 569

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G  + A  LL  M  + + P+E TYNTL+HG C+  ++++A  LL +M   G  PD +
Sbjct: 570 LTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVV 629

Query: 257 SFNPT----------------------------RLTYNALIQGLCKNQEGDLAEELLREM 288
           ++N                                TYN ++ GLCKN   D A ++ + +
Sbjct: 630 TYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSL 689

Query: 289 VSKGI-----------------------------------TPDDNTYFSLIEGI 307
            SKG+                                    PD  TY  + E +
Sbjct: 690 CSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENL 743



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 162/343 (47%), Gaps = 41/343 (11%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S  V PD  TY   +   C+ GRLE    +   + + G     + +N L+ G C+   L+
Sbjct: 188 SDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLD 247

Query: 63  MAFS-FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIV--PDSITY 118
            A +     M + G  P   +YN L+     E +  EA ++L  M + +G+   PD ++Y
Sbjct: 248 EATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSY 307

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +ING+ R G   KA++L  +MI +GI P ++TY ++I  L K   +  A  +F+  L 
Sbjct: 308 NTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLD 367

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG+ P    +N LI G+ + G  +    LL+EM    + PD   Y  L+   C+ G+  E
Sbjct: 368 KGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTE 427

Query: 239 ARRLLDQMKRRGIKPDHI--------------SFNPTRLTYNALIQGLCK---------- 274
           AR + D + R+GIKPD +                +P  + Y ALI  LCK          
Sbjct: 428 ARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILK 487

Query: 275 -NQ------------EGDLAEELLREMVSKGITPDDNTYFSLI 304
            NQ            + + AEEL+ EM+ +GI  D   + +L+
Sbjct: 488 FNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLM 530



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 133/259 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ D   + + +  +C+EGR+ EA R++E M   G+ P  ++YNTL+DG+C  G 
Sbjct: 514 MLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGR 573

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D MV  G+ P   TYN L+H     R++ +A  +L+EM   G  PD +TYN 
Sbjct: 574 TDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNT 633

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G  + G   +A  L+  MI+   Q  M TY  ++  L K N + EA ++F++  +KG
Sbjct: 634 ILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKG 693

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   I+ FN +I      G  E A  L   +    + PD  TY  +     ++G +EE  
Sbjct: 694 LQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELG 753

Query: 241 RLLDQMKRRGIKPDHISFN 259
            L   M+  G  P+    N
Sbjct: 754 VLFSAMEENGTAPNSRMLN 772



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 133/280 (47%), Gaps = 7/280 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD  +Y + V G C  GR +EA+++L+ M   GL P   TYNTL+ GYC    ++ A
Sbjct: 553 GVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDA 612

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +S   EM+  G  P   TYN ++H L    +  EA ++   M       D  TYNI++NG
Sbjct: 613 YSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNG 672

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +AF +   +  KG+Q  ++T+  +I  L K  +  +A  LF    A G++PD
Sbjct: 673 LCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPD 732

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +  + +     G++E    L   M+     P+    N L+     +G +  A   L 
Sbjct: 733 VETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLS 792

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           ++       D  +F+    T + LI    + +   LA+ L
Sbjct: 793 KL-------DEKNFSLEASTASMLISLYSRGEYQQLAKSL 825



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 12/220 (5%)

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
           D M++E  +K + PD  TY+ILI  +CR G  +  F++   ++  G +   + +  L+  
Sbjct: 181 DRMVRECSDK-VAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKG 239

Query: 160 LSKQNRMIEADQLFENFLAK-GMLPDIVMFNALIDGHCTNGNIERAFSLLKEM---DRMK 215
           L    R+ EA  +    + + G  P++V +N L+ G C     E A  LL  M     + 
Sbjct: 240 LCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLS 299

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
             PD V+YNT+++G  R+G+V++A  L  QM  RGI PD +       TYN +I GLCK 
Sbjct: 300 CPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVV-------TYNTVIDGLCKA 352

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           Q  D A+ + ++M+ KG+ P + TY  LI G  S  K  E
Sbjct: 353 QVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKE 392



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 151/329 (45%), Gaps = 34/329 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRL-----------------------EEASRMLEQMK 37
           M+ +G+ P+   YG+ +  +CK GR+                       E+A  ++ +M 
Sbjct: 456 MRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEML 515

Query: 38  ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97
           + G+    V +NTL+   C +G +  A    + M++ G+ P   +YN L+    +  +  
Sbjct: 516 DQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTD 575

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA  +L  M   G+ P+  TYN L++GYC+      A+SL  EM+  G  P ++TY +++
Sbjct: 576 EAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTIL 635

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L +  R  EA +L+ N +      D+  +N +++G C N  ++ AF + + +    + 
Sbjct: 636 HGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQ 695

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
              +T+N ++    + GK E+A  L   +   G+ PD         TY  + + L K  E
Sbjct: 696 LHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPD-------VETYCLIAENLIK--E 746

Query: 278 GDLAE--ELLREMVSKGITPDDNTYFSLI 304
           G L E   L   M   G  P+     +L+
Sbjct: 747 GSLEELGVLFSAMEENGTAPNSRMLNALV 775



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 101/212 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+ +TY + + G CK  R+++A  +L +M  NG  P  VTYNT++ G    G 
Sbjct: 584 MVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGR 643

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M+         TYN++++ L     + EA  M + +  KG+    IT+NI
Sbjct: 644 FSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNI 703

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    + G  + A  L   +   G+ P + TY  +   L K+  + E   LF      G
Sbjct: 704 MIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENG 763

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
             P+  M NAL+      G+I RA + L ++D
Sbjct: 764 TAPNSRMLNALVRRFLHRGDISRAGAYLSKLD 795



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           Q D YTY   ++G+CK   ++EA +M + +   GL    +T+N +I      G  E A  
Sbjct: 660 QWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMD 719

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               +   G++P   TY L+   L+ E  + E   +   M E G  P+S   N L+  + 
Sbjct: 720 LFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFL 779

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
             G+  +A +   ++  K       T + LI + S+      A  L E +
Sbjct: 780 HRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGEYQQLAKSLPEKY 829



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+G+Q    T+   +  + K G+ E+A  +   +   GLVP   TY  + +    +G+LE
Sbjct: 691 SKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLE 750

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                   M + G  P +   N L+   L    +  A   L ++ EK    ++ T ++LI
Sbjct: 751 ELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLI 810

Query: 123 NGYCR 127
           + Y R
Sbjct: 811 SLYSR 815


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  +   + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L ++  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPDTI-------TYTMIINEFCKKGDVWTGSKLLKEMQRDGQMP 414



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 171/309 (55%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H+   +  +  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 176 TLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G CR+G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 RDLIDEMSMKGLKPD-------KITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVG 348

Query: 300 YFSLIEGIA 308
           Y +LI G+ 
Sbjct: 349 YTALISGLC 357



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 133/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + IQ   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD + +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/267 (37%), Positives = 152/267 (56%), Gaps = 7/267 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   TY S V G  KEG ++ A  +  +M E G+ P  VTY +LI+G+C    +++A
Sbjct: 564 GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLA 623

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              RDEM ++G+    + Y+ LI      R M  A D+  E+ E G+ P+ I YN +I+G
Sbjct: 624 LKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISG 683

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +    N + A   + +MI+  I   + TYT+LI  L K+ R++ A  L+   L+KG++PD
Sbjct: 684 FRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPD 743

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ F+ L++G C  G +E A  +L+EMDR  + P  + YNTL+ G  R+G ++EA  L D
Sbjct: 744 IITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHD 803

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQG 271
           +M  RG+ PD +       TY+ LI G
Sbjct: 804 EMLDRGLVPDDV-------TYDILING 823



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 176/337 (52%), Gaps = 41/337 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY--------- 55
           G+ P+  TY   + G C  G +E+AS +  QMK NG+ P+    N+L+ GY         
Sbjct: 355 GLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEA 414

Query: 56  -------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
                                    C  G ++ A S  D MV QG++P   +YN +I   
Sbjct: 415 SKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGH 474

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
             +  M  A  +  +M  + + P+ +TY+ILI+G  + G+++KA  L D+M+   I PT 
Sbjct: 475 CRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTD 534

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            T+ ++I  L K  +M EA    +NFL +G +P  + +N+++DG    GNI+ A ++ +E
Sbjct: 535 FTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYRE 594

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M    V P+ VTY +L++G C+  +++ A +  D+M+ +G++ D  +       Y+ALI 
Sbjct: 595 MCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTA-------YSALID 647

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           G CK ++ + A++L  E++  G++P+   Y S+I G 
Sbjct: 648 GFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGF 684



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 9/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+  +Y   + G C++G ++ AS +   M    L P  VTY+ LIDG   KG+
Sbjct: 455 MVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGD 514

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    D+M+   I PT  T+N +I+ L    +M EA D LK   E+G +P  +TYN 
Sbjct: 515 SEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNS 574

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+ + GN   A +++ EM   G+ P ++TYTSLI    K NR+  A +  +    KG
Sbjct: 575 IVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKG 634

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+  ++ALIDG C   ++E A  L  E+  + + P+ + YN+++ G      +E A 
Sbjct: 635 LELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAAL 694

Query: 241 RLLDQMKRRGIKPDHISFNPTRL-TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
               +M    I        P  L TY  LI GL K      A +L  EM+SKGI PD  T
Sbjct: 695 VWYKKMINDRI--------PCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIIT 746

Query: 300 YFSLIEGIAS 309
           +  L+ G+ +
Sbjct: 747 FHVLVNGLCN 756



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 175/409 (42%), Gaps = 97/409 (23%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D +T    V    KEGR+EEA     + KE G+   A  Y+ +I   C K N
Sbjct: 211 MVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPN 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
             +     +EM ++G +P+ +T+  +I   + +  MVEA  + +EM              
Sbjct: 271 SNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATS 330

Query: 107 ---------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                 E G+ P+ +TY++LI G C  GN +KA  L+ +M   G
Sbjct: 331 LMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNG 390

Query: 146 IQPT----------------------------------MLTYTSLIFVLSKQNRMIEADQ 171
           I P+                                  + TY  ++  L K  +M EA  
Sbjct: 391 IPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACS 450

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L +N + +GM+P++V +N +I GHC  GN++ A S+  +M    + P+ VTY+ L+ G  
Sbjct: 451 LLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNF 510

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PTRL 263
           ++G  E+A  L DQM    I P   +FN                            P+ +
Sbjct: 511 KKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCM 570

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           TYN+++ G  K    D A  + REM   G++P+  TY SLI G    ++
Sbjct: 571 TYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNR 619



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 165/320 (51%), Gaps = 18/320 (5%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K RGV+ D+  Y   +  +CK+        +LE+MKE G VP+  T+ ++I     +GN+
Sbjct: 247 KERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNM 306

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-----DMLKEMGEKGIVPDSI 116
             A   ++EM+  G        NL++   LM+    + +     ++  ++ E G+ P+ +
Sbjct: 307 VEALRLKEEMINCG-----KPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKV 361

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TY++LI G C  GN +KA  L+ +M   GI P++    SL+    K     EA +LF+  
Sbjct: 362 TYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEA 421

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +  G + +I  +N ++   C  G ++ A SLL  M    + P+ V+YN ++ G CR+G +
Sbjct: 422 VDCG-VANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNM 480

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + A  +   M  R +KP+ +       TY+ LI G  K  + + A +L  +M+S  I P 
Sbjct: 481 DMASSVFSDMLARDLKPNVV-------TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPT 533

Query: 297 DNTYFSLIEGIASVDKAAES 316
           D T+ ++I G+  V + +E+
Sbjct: 534 DFTFNTIINGLCKVGQMSEA 553



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 150/325 (46%), Gaps = 27/325 (8%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D   +   ++   +  R+E A      M    ++P     N L+     +  +       
Sbjct: 149 DHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLY 208

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           ++MV +GI     T ++++   L E ++ EA++  +E  E+G+  D+  Y+I+I   C+ 
Sbjct: 209 NKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKK 268

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            N+     L +EM  +G  P+  T+TS+I     Q  M+EA +L E  +  G   ++V+ 
Sbjct: 269 PNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVA 328

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            +L+ G+C  GN++ A +L  ++    + P++VTY+ L+ G C  G +E+A  L  QMK 
Sbjct: 329 TSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKL 388

Query: 249 RGIKPDHISFN---------------------------PTRLTYNALIQGLCKNQEGDLA 281
            GI P   + N                               TYN ++  LCK  + D A
Sbjct: 389 NGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEA 448

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
             LL  MV++G+ P+  +Y  +I G
Sbjct: 449 CSLLDNMVNQGMVPNVVSYNDMILG 473



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 7/271 (2%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            +N L++ Y     +E A    + M+ Q ++P     N+L+  L+    + E  D+  +M
Sbjct: 152 VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKM 211

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
             +GI  D  T ++++    + G  ++A     E   +G++     Y+ +I  + K+   
Sbjct: 212 VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNS 271

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
               +L E    +G +P    F ++I      GN+  A  L +EM       + V   +L
Sbjct: 272 NLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSL 331

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           M G C QG ++ A  L +++   G+ P+       ++TY+ LI+G C +   + A EL  
Sbjct: 332 MKGYCAQGNLDSALNLFNKITEDGLFPN-------KVTYSVLIEGCCNSGNIEKASELYT 384

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           +M   GI P      SL+ G        E+S
Sbjct: 385 QMKLNGIPPSVFNVNSLLRGYLKAPLWEEAS 415


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 164/303 (54%), Gaps = 10/303 (3%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           ++ G   D + Y + V+G C+ GRL+ A R++  M    + P A TY  +I G C++G +
Sbjct: 101 EASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRV 157

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A +  D+M+++G  P+  TY +L+  +       EA ++L EM  KG  P+ +TYN++
Sbjct: 158 GDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVI 217

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ING CR G    A  + + +   G QP +++YT+++  L    R  +   LF   + K  
Sbjct: 218 INGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 277

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P+ V F+ L+   C  G +ERA  +L++M +    P+    N +++  C+QG+V++A  
Sbjct: 278 VPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYD 337

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
            L+ M   G  PD IS       Y  +++GLC+    + A+ELL EMV K   P++ T+ 
Sbjct: 338 FLNNMGMYGCNPDTIS-------YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFN 390

Query: 302 SLI 304
           + I
Sbjct: 391 TFI 393



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 34/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S  V PD+YTY   + G+C  GR+ +A  +L+ M + G  P+ VTY  L++  C    
Sbjct: 132 IASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSG 191

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  DEM  +G  P   TYN++I+ +  E ++ +A ++L  +   G  PD ++Y  
Sbjct: 192 FGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTT 251

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C          L  EM+ K   P  +T+  L+    +   +  A Q+ +     G
Sbjct: 252 VLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+  + N +I+  C  G ++ A+  L  M     +PD ++Y T++ G CR G+ E A+
Sbjct: 312 CTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAK 371

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL +M R+   P+ ++FN                               +TYNAL+ G 
Sbjct: 372 ELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGF 431

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAE 315
           C     D A EL   +  +   P+  TY +L+ G+     +D AAE
Sbjct: 432 CVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAE 474



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 168/344 (48%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G QPD  +Y + + G+C   R ++   +  +M +   VP  VT++ L+  +C  G 
Sbjct: 237 LSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGM 296

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     +M + G  P  +  N++I+ +  + ++ +A D L  MG  G  PD+I+Y  
Sbjct: 297 VERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTT 356

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G CR G  + A  L  EM+ K   P  +T+ + I +L ++  + +A +L E     G
Sbjct: 357 VLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG 416

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               IV +NAL+ G C  G ++ A  L    + +   P+ +TY TL+ G C   +++ A 
Sbjct: 417 CSVGIVTYNALVHGFCVQGRVDSALELF---NNLPCEPNTITYTTLLTGLCHAERLDAAA 473

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL  M ++    + ++FN                            P  +T+N L+ G+
Sbjct: 474 ELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGI 533

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K+   + A ELL  +VSKG++ D  TY S+++ ++  D+  E+
Sbjct: 534 TKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEA 577



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 153/336 (45%), Gaps = 31/336 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P++      ++ +CK+GR+++A   L  M   G  P  ++Y T++ G C  G 
Sbjct: 307 MSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR 366

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EMV++   P   T+N  I  L  +  + +A  +++ M E G     +TYN 
Sbjct: 367 WEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 426

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C  G    A  L + +     +P  +TYT+L+  L    R+  A +L    + K 
Sbjct: 427 LVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKD 483

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              + V FN L+   C  G +E A  L+ +M      P+ +T+NTL+ G  +    EEA 
Sbjct: 484 CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEAL 543

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL  +  +G+  D I+++                            P    YN ++  L
Sbjct: 544 ELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFAL 603

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  E D A +    MVS G  P+++TY  LIEG+A
Sbjct: 604 CKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLA 639



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 150/295 (50%), Gaps = 14/295 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P+  T+ +F+  +C++G +E+A +++E M E G     VTYN L+ G+C +G 
Sbjct: 377 MVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR 436

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + +  +   P   TY  L+  L    ++  A ++L  M +K    +++T+N+
Sbjct: 437 VDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNV 493

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+ G  ++A  L ++M+  G  P ++T+ +L+  ++K     EA +L    ++KG
Sbjct: 494 LVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 553

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D + +++++D        E A  +L  +  M + P    YN ++   C++ + ++A 
Sbjct: 554 VSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAI 613

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE--LLREMVSKGI 293
                M   G  P+         TY  LI+GL    EG L E   +L E+ +KG+
Sbjct: 614 DFFAYMVSNGCMPNES-------TYIILIEGL--AHEGLLKEARYVLSELYAKGV 659



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 39/250 (15%)

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG- 145
           +  L+    + EA  +++    +G  PD      LI   CR G    A  +       G 
Sbjct: 46  LRRLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGA 105

Query: 146 -------------------------------IQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
                                          + P   TYT +I  L  + R+ +A  L +
Sbjct: 106 PVDVFAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLD 165

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           + L +G  P +V +  L++  C +     A ++L EM      P+ VTYN +++G CR+G
Sbjct: 166 DMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREG 225

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           +V++A+ +L+++   G +PD +S       Y  +++GLC  +  D  + L  EMV K   
Sbjct: 226 RVDDAKEILNRLSSYGFQPDIVS-------YTTVLKGLCAARRWDDVKVLFAEMVDKKCV 278

Query: 295 PDDNTYFSLI 304
           P++ T+  L+
Sbjct: 279 PNEVTFDMLV 288



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++ T+   VS  C++G +EEA  ++ QM E+G  P  +T+NTL+DG     N E A    
Sbjct: 487 NAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELL 546

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             +V +G+     TY+ ++  L  E +  EA  ML  + + G+ P    YN ++   C+ 
Sbjct: 547 HGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKR 606

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
               +A      M+  G  P   TY  LI  L+ +  + EA  +     AKG+L
Sbjct: 607 CETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVL 660



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L  ++ + EA +L E   ++G  PD+ +   LI   C  G    A  +L+  +      D
Sbjct: 49  LIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVD 108

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC-KNQEG 278
              YNTL+ G CR G+++ ARRL+  M    + PD  ++ P       +I+GLC + + G
Sbjct: 109 VFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTP-------IIRGLCDRGRVG 158

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           D A  LL +M+ +G  P   TY  L+E +       E+ N
Sbjct: 159 D-ALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMN 197



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+GV  D+ TY S V  + +E R EEA +ML  +++ G+ P    YN ++   C +  
Sbjct: 549 LVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCE 608

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
            + A  F   MV  G MP  STY +LI  L  E  + EA  +L E+  KG++  S+
Sbjct: 609 TDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLSKSL 664


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 134 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEG 193

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G++P   TY++LI+ L  E KM +A+++  EM  KG++P+ +T+  LI+G
Sbjct: 194 FRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDG 253

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++  M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 254 HCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 313

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 314 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLR 373

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 374 EMLSVGLKPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 426

Query: 305 EG 306
            G
Sbjct: 427 NG 428



 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 59  LETKGTQRSDIYVFSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLK 118

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 119 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 178

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+ P + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 179 TLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVK 238

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K M    + PD +TYNTL++G C++G +++A
Sbjct: 239 GLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQA 298

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 299 HDLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 351

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 352 YAALISGLCQEGRSVDA 368



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 133/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV PD YTY   ++G+CKE ++++A+ + ++M   GL+P  VT+ TLIDG+C  G 
Sbjct: 200 MLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGR 259

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 260 VDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 319

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + Y +LI  L ++ R ++A+++    L+ G
Sbjct: 320 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVG 379

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 380 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+P+   Y + +  MCK+  + +A  +  +M    + P  VTY++LI G+C  G L+ A 
Sbjct: 194 VRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAV 253

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              + M+   I P   T+++LI     E K+ EA ++L  M +K +  D +TYN L++GY
Sbjct: 254 DLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGY 313

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C      KA SL + M  +G+ P + +Y+ +I    K   + EA +LFE    K + P++
Sbjct: 314 CLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNV 373

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N+L+DG C +G    A  L+ EM       + +TYN+++   C+   V++A  LL +
Sbjct: 374 VTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTK 433

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +K +GI+PD         TY  LI GLCK    D A+++  +++ KG +P+  TY SLI 
Sbjct: 434 IKEKGIQPD-------IFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLIN 486

Query: 306 GIAS 309
           G  +
Sbjct: 487 GFCN 490



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 174/316 (55%), Gaps = 11/316 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q D  +YG+ ++G+C+ G  + A ++L ++    + P  V Y+T+ID  C    + 
Sbjct: 156 AQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVN 215

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF    EMV + I P   TY+ LI    +  K+  A D+   M    I P+  T++ILI
Sbjct: 216 DAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILI 275

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKG 180
           +G+C+ G  ++A ++   M+ K ++  ++TY SL+  + L KQ    +A  LF     +G
Sbjct: 276 DGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVN--KAKSLFNVMAQRG 333

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  ++ +I+G C    ++ A  L +EM   ++ P+ VTYN+L+ G C+ G+   A 
Sbjct: 334 VTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCAL 393

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D+M  RG +P +I      +TYN+++  +CKN   D A  LL ++  KGI PD  TY
Sbjct: 394 ELVDEMHDRG-QPSNI------ITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTY 446

Query: 301 FSLIEGIASVDKAAES 316
             LI G+  V +  ++
Sbjct: 447 TVLINGLCKVGRLDDA 462



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 169/321 (52%), Gaps = 28/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ + PD  TY S +SG C  G+L+ A  +  +M  + + P   T++ LIDG+C +G 
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGK 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +    M+K+ +     TYN L+    + +++ +A  +   M ++G+ PD  +Y+I
Sbjct: 284 VREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSI 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     +A  L +EM  K I P ++TY SL+  L K  R   A +L +    +G
Sbjct: 344 MINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +I+ +N+++D  C N ++++A  LL ++    + PD  TY  L++G C+ G++++A+
Sbjct: 404 QPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQ 463

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           ++ + +  +G  P+  ++                             P  +TY  LI  L
Sbjct: 464 KVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSL 523

Query: 273 CKNQEGDLAEELLREMVSKGI 293
            +  E D AE+LLREM+++G+
Sbjct: 524 FEKDENDKAEKLLREMIARGL 544



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++PD  T    ++   + G ++ +  +  ++ + G  P AVT+  LI G C KG 
Sbjct: 84  MEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGE 143

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D++V QG      +Y  LI+ L    +   A  +L+ +  K + P+ + Y+ 
Sbjct: 144 VHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYST 203

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+      AF L+ EM+ K I P ++TY+SLI       ++  A  LF   ++  
Sbjct: 204 IIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDN 263

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  F+ LIDG C  G +  A ++L  M +  V  D VTYN+LM G C   +V +A+
Sbjct: 264 INPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAK 323

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L + M +RG+ PD  S       Y+ +I G CK +  D A +L  EM  K I P+  TY
Sbjct: 324 SLFNVMAQRGVTPDVWS-------YSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTY 376

Query: 301 FSLIEGIA 308
            SL++G+ 
Sbjct: 377 NSLVDGLC 384



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 168/309 (54%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +G  +  + K  + + A  + +QM+ NG+ P  +T N L++ +   G+++ +FS 
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K+G  P A T+ +LI  L ++ ++ +A     ++  +G   D ++Y  LING CR
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCR 175

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K A  L   +  K ++P ++ Y+++I  + K   + +A  L+   ++K + PD+V 
Sbjct: 176 VGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVT 235

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +++LI G C  G ++ A  L   M    ++P+  T++ L+ G C++GKV EA+ +L  M 
Sbjct: 236 YSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMM 295

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           ++ +K D +       TYN+L+ G C  ++ + A+ L   M  +G+TPD  +Y  +I G 
Sbjct: 296 KKNVKLDVV-------TYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGF 348

Query: 308 ASVDKAAES 316
             +    E+
Sbjct: 349 CKIKMVDEA 357



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 124/246 (50%), Gaps = 7/246 (2%)

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           K   +P A  +  ++  LL  ++   A  + ++M   GI PD IT N+L+N + + G+ K
Sbjct: 51  KNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIK 110

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            +FS+  +++ KG  P  +T+T LI  L  +  + +A    +  +A+G   D V +  LI
Sbjct: 111 FSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLI 170

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +G C  G  + A  LL+ +D   V P+ V Y+T++   C+   V +A  L  +M  + I 
Sbjct: 171 NGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRIS 230

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           PD +       TY++LI G C   +   A +L   M+S  I P+  T+  LI+G     K
Sbjct: 231 PDVV-------TYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGK 283

Query: 313 AAESSN 318
             E+ N
Sbjct: 284 VREAKN 289



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 98/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  TY S V G+CK GR   A  ++++M + G     +TYN+++D  C   +
Sbjct: 364 MHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNH 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     ++ ++GI P   TY +LI+ L    ++ +A  + +++  KG  P+  TY  
Sbjct: 424 VDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTS 483

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C  G   +  ++  +M   G  P  +TY  LI  L +++   +A++L    +A+G
Sbjct: 484 LINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARG 543

Query: 181 ML 182
           +L
Sbjct: 544 LL 545


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 149/271 (54%), Gaps = 2/271 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++PD+ T+ S + G+CKEGR++EA+++  +M      P  VTY TLIDGYC  GN
Sbjct: 239 MDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGN 298

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   R  M   G++P  +TYN ++ +L  +  M E   +L EM  + +  D +T N 
Sbjct: 299 VEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNT 358

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G+   A  +  +M+  G+Q    TY +LI    K   +  A + F   +  G
Sbjct: 359 LINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVDAG 418

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+  +F+ L+DG C   N +   ++  E+ +  + PD+  Y +L+   CR+G V++A+
Sbjct: 419 FSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQ 478

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
           R+ DQM+ +G+  D + +    L Y  L +G
Sbjct: 479 RVFDQMQSKGLVGDSLVY--ATLAYTYLTKG 507



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 146/322 (45%), Gaps = 28/322 (8%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           + +  R  +A R+ + M+  GL P A     L+           A    DEM + G+  T
Sbjct: 118 LAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAAT 177

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
              YN ++H  L      +A+ ++  M   G+  D  +YN +I  YCR G   +A    D
Sbjct: 178 THVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCARD 237

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
            M  +GI+P  +T+ S I  L K+ R+ EA QLF   +A    PD V +  LIDG+C  G
Sbjct: 238 RMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAG 297

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
           N+E A  L   M+   + P   TYN ++   C  G ++E  RLL +M  R ++ DH++ N
Sbjct: 298 NVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCN 357

Query: 260 P----------------------------TRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                           TY ALI G CK +E D A+E   +MV  
Sbjct: 358 TLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVDA 417

Query: 292 GITPDDNTYFSLIEGIASVDKA 313
           G +P+ + +  L++G    + A
Sbjct: 418 GFSPNYSVFSWLVDGFCKKNNA 439



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+   ++ Y + +    K G   +A  ++ +M   G+     +YNT+I  YC KG 
Sbjct: 169 MARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGM 228

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A   RD M K+GI P   T+N  IH L  E ++ EA  +  EM      PD++TY  
Sbjct: 229 GYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTT 288

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR GN ++A  L   M   G+ P + TY +++  L +   M E  +L      + 
Sbjct: 289 LIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRK 348

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V  N LI+ +C  G++  A  + K+M    +  +  TY  L+HG C+  +++ A+
Sbjct: 349 VQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAK 408

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               QM   G  P++  F       + L+ G CK    D    +  E++ +G+ PD   Y
Sbjct: 409 EAFFQMVDAGFSPNYSVF-------SWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVY 461

Query: 301 FSLIE 305
            SLI 
Sbjct: 462 RSLIR 466



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 121/226 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P   TY + +  +C++G ++E  R+L +M    +    VT NTLI+ YC +G+
Sbjct: 309 MEAAGMLPGVATYNAILRKLCEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRGD 368

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   + +M++ G+     TY  LIH     R++  A +   +M + G  P+   ++ 
Sbjct: 369 MTSACKVKKKMMESGLQLNHFTYKALIHGFCKARELDGAKEAFFQMVDAGFSPNYSVFSW 428

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C+  NA    ++ DE++ +G+ P    Y SLI  L ++  + +A ++F+   +KG
Sbjct: 429 LVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQRVFDQMQSKG 488

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
           ++ D +++  L   + T GN   A + L  M + +++     YN L
Sbjct: 489 LVGDSLVYATLAYTYLTKGNPTAALNTLDGMTKNQLYITPQIYNCL 534



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 7/165 (4%)

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           + L+ VL++  R  +A ++F++  A+G+ PD     AL+           A  +  EM R
Sbjct: 112 SWLVLVLAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDEMAR 171

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
             +      YN ++H   + G   +A  ++ +M   G+  D       R +YN +I   C
Sbjct: 172 AGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLD-------RFSYNTVIALYC 224

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +   G  A      M  +GI PD  T+ S I G+    +  E++ 
Sbjct: 225 RKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQ 269



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 52/125 (41%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+   +   V G CK+   +    + +++ + GL P    Y +LI   C KG 
Sbjct: 414 MVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAVYRSLIRRLCRKGL 473

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D+M  +G++  +  Y  L +  L +     A + L  M +  +      YN 
Sbjct: 474 VDQAQRVFDQMQSKGLVGDSLVYATLAYTYLTKGNPTAALNTLDGMTKNQLYITPQIYNC 533

Query: 121 LINGY 125
           L   Y
Sbjct: 534 LCTSY 538


>gi|255660988|gb|ACU25663.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 376

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRAVCVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L   L   +++ +A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLXKGLCLDHKVEKALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQHALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 151/292 (51%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+  ++ E+ + P AV YN +++GY     ++  F   + M ++G   + 
Sbjct: 1   CESGDIDGAERVYNEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGREG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M + G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVEEVIXIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P+  ++N LI+G      
Sbjct: 120 AEQKGGVVDAFAYSAMINGLCKEANLDRAVCVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+       NP
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L +GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 GVITYSMLXKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L   L ++ K+ +A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLNPGVITYSMLXKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQHALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ +  E+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYNEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGREG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVEEVIXIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVV 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVCVLNGMIKSGCKPNAHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|449488446|ref|XP_004158042.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11710, mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 168/333 (50%), Gaps = 29/333 (8%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+   Y   ++G CK  RLE A  +L +M + G+     TY TLIDGY  KG+L++AF
Sbjct: 283 VSPNIVAYNCIINGFCKIRRLESAKNVLGEMIKLGIYFNERTYATLIDGYARKGSLDVAF 342

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEMV+  ++P    YN LI+ L ME ++ EA  +L +M  + I+PD  TY+IL  G 
Sbjct: 343 RLCDEMVEMRLIPDTFVYNSLIYWLYMEGELEEASFLLSDMINRRILPDEFTYSILTKGL 402

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G+  KA  +H  ++ + +     TY  LI  + +   +  A QL  + +  G+ PD+
Sbjct: 403 CVSGHLNKALRVHYYIVERSLVRDAFTYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDM 462

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +   +DGHC  G IE A  +  +  +     + V YN+++ G C+QG +  A+ L+D+
Sbjct: 463 VTYGTPVDGHCKEGKIEAAVQIYDKTVKADGKSNLVVYNSILDGLCKQGSIYAAKLLVDK 522

Query: 246 MKRRGIKPDHISFNPTR----------------------------LTYNALIQGLCKNQE 277
           +++ G   D +++N                               ++YN +I  LCK   
Sbjct: 523 LQQNGF-LDPVTYNTLLHGFCVNGEIEKAFALFLEMINVGSLVNIVSYNIMIHFLCKMGL 581

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
              A EL+R M S+GI PD  TY +LI     +
Sbjct: 582 IQQAMELMRAMSSQGIIPDLITYTTLITNFVEI 614



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 150/297 (50%), Gaps = 8/297 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD++ Y S +  +  EG LEEAS +L  M    ++P   TY+ L  G C  G+L  A   
Sbjct: 355 PDTFVYNSLIYWLYMEGELEEASFLLSDMINRRILPDEFTYSILTKGLCVSGHLNKALRV 414

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              +V++ ++  A TYN+LI+ +   R +  A  +L  M   GI PD +TY   ++G+C+
Sbjct: 415 HYYIVERSLVRDAFTYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDGHCK 474

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A  ++D+ +    +  ++ Y S++  L KQ  +  A  L +     G L D V 
Sbjct: 475 EGKIEAAVQIYDKTVKADGKSNLVVYNSILDGLCKQGSIYAAKLLVDKLQQNGFL-DPVT 533

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N L+ G C NG IE+AF+L  EM  +    + V+YN ++H  C+ G +++A  L+  M 
Sbjct: 534 YNTLLHGFCVNGEIEKAFALFLEMINVGSLVNIVSYNIMIHFLCKMGLIQQAMELMRAMS 593

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +GI PD I       TY  LI    +        EL   MV KG  PD  TY S +
Sbjct: 594 SQGIIPDLI-------TYTTLITNFVEICGSKDVIELHDYMVLKGAVPDRKTYRSFV 643



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 141/289 (48%), Gaps = 16/289 (5%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G  ++   M ++M  +G      T+N +I   CN+  L  A      M+K  I P   T+
Sbjct: 193 GETDKFXNMYKEMIASGYSENVNTFNLIIYALCNECKLLEAIYVVYLMLKIEIWPNVVTF 252

Query: 84  NLLIHELLMERKMVEADDMLK-----EMGEKGIV-PDSITYNILINGYCRCGNAKKAFSL 137
           N++I +     KM E D  LK     E+   G V P+ + YN +ING+C+    + A ++
Sbjct: 253 NMIIDK---ANKMGEMDLALKLTRNTEVISGGSVSPNIVAYNCIINGFCKIRRLESAKNV 309

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
             EMI  GI     TY +LI   +++  +  A +L +  +   ++PD  ++N+LI     
Sbjct: 310 LGEMIKLGIYFNERTYATLIDGYARKGSLDVAFRLCDEMVEMRLIPDTFVYNSLIYWLYM 369

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G +E A  LL +M   ++ PDE TY+ L  G C  G + +A R+   +  R +  D   
Sbjct: 370 EGELEEASFLLSDMINRRILPDEFTYSILTKGLCVSGHLNKALRVHYYIVERSLVRD--- 426

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                 TYN LI  + +++    A++LL  M+  GI PD  TY + ++G
Sbjct: 427 ----AFTYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDG 471



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 2/234 (0%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R +  D++TY   ++ M +   +  A ++L  M   G+ P  VTY T +DG+C +G +E 
Sbjct: 421 RSLVRDAFTYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDGHCKEGKIEA 480

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    D+ VK         YN ++  L  +  +  A  ++ ++ + G + D +TYN L++
Sbjct: 481 AVQIYDKTVKADGKSNLVVYNSILDGLCKQGSIYAAKLLVDKLQQNGFL-DPVTYNTLLH 539

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G  +KAF+L  EMI+ G    +++Y  +I  L K   + +A +L     ++G++P
Sbjct: 540 GFCVNGEIEKAFALFLEMINVGSLVNIVSYNIMIHFLCKMGLIQQAMELMRAMSSQGIIP 599

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           D++ +  LI         +    L   M      PD  TY + +   C Q   E
Sbjct: 600 DLITYTTLITNFVEICGSKDVIELHDYMVLKGAVPDRKTYRSFV-SPCLQEHTE 652



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 111/214 (51%), Gaps = 16/214 (7%)

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
           +M KEM   G   +  T+N++I   C      +A  +   M+   I P ++T+  +I   
Sbjct: 200 NMYKEMIASGYSENVNTFNLIIYALCNECKLLEAIYVVYLMLKIEIWPNVVTFNMII--- 256

Query: 161 SKQNRMIEAD---QLFEN--FLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
            K N+M E D   +L  N   ++ G + P+IV +N +I+G C    +E A ++L EM ++
Sbjct: 257 DKANKMGEMDLALKLTRNTEVISGGSVSPNIVAYNCIINGFCKIRRLESAKNVLGEMIKL 316

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            ++ +E TY TL+ G  R+G ++ A RL D+M    + PD          YN+LI  L  
Sbjct: 317 GIYFNERTYATLIDGYARKGSLDVAFRLCDEMVEMRLIPD-------TFVYNSLIYWLYM 369

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             E + A  LL +M+++ I PD+ TY  L +G+ 
Sbjct: 370 EGELEEASFLLSDMINRRILPDEFTYSILTKGLC 403


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 163/315 (51%), Gaps = 11/315 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+   + S + G+CK+G +++A  MLE+M  NG  P   T+  LIDG C +G  E A
Sbjct: 305 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 364

Query: 65  FSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           F    ++V+  I  P   TY  +I     E K+  A+ +   M E+G+ P+  TY  LIN
Sbjct: 365 FRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 424

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+ GN  +A+ L + M  +G +P + TY ++I  L K++R  EA +L     + G+  
Sbjct: 425 GHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEA 484

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +  LI   C   +I++A +    M++     D    N L+   CRQ K++E+ RL 
Sbjct: 485 DGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLF 544

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +   G+ P       T+ TY ++I G CK  + DLA +    M   G  PD  TY SL
Sbjct: 545 QLVVSLGLVP-------TKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSL 597

Query: 304 IEGIAS---VDKAAE 315
           I G+     VD+A +
Sbjct: 598 ISGLCKKSMVDEACK 612



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 139/264 (52%), Gaps = 4/264 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S   +P+ +TY S + G CKE +L  A  +  +MKE GL P   TY TLI+G+C  GN
Sbjct: 372 VRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGN 431

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+   + M  +G  P   TYN +I  L  + +  EA ++L +    G+  D +TY I
Sbjct: 432 FDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTI 491

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+  + K+A +    M   G +  M     LI    +Q +M E+++LF+  ++ G
Sbjct: 492 LIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLG 551

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + ++I G+C  G+ + A      M R    PD  TY +L+ G C++  V+EA 
Sbjct: 552 LVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEAC 611

Query: 241 RLLDQMKRRGIKPDHISFNPTRLT 264
           +L + M  RG+ P  +    TR+T
Sbjct: 612 KLYEAMIDRGLSPPEV----TRVT 631



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 163/342 (47%), Gaps = 43/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV PDS ++   V G  ++G+++EA R L  M + G +P   T   ++   C  G 
Sbjct: 231 MSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGL 290

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  +  +M+  G  P    +  LI  L  +  + +A +ML+EM   G  P+  T+  
Sbjct: 291 VNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 350

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C+ G  +KAF L  +++   I +P + TYTS+I    K++++  A+ LF     +
Sbjct: 351 LIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQ 410

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P++  +  LI+GHC  GN +RA+ L+  MD     P+  TYN ++   C++ +  EA
Sbjct: 411 GLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEA 470

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ-----------------EGDL-- 280
             LL++    G++ D +       TY  LIQ  CK                   E D+  
Sbjct: 471 YELLNKAFSCGLEADGV-------TYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRL 523

Query: 281 ----------------AEELLREMVSKGITPDDNTYFSLIEG 306
                           +E L + +VS G+ P   TY S+I G
Sbjct: 524 NNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISG 565



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 159/294 (54%), Gaps = 8/294 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           GRL EA  M+  M+  GL P+++T N +++     G ++ A +  DEM  +G+ P +S++
Sbjct: 184 GRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSF 243

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
            L++     + K+ EAD  L  M ++G +PD+ T  ++++  C  G   +A     +MI 
Sbjct: 244 KLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMID 303

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G +P ++ +TSLI  L K+  + +A ++ E  +  G  P++    ALIDG C  G  E+
Sbjct: 304 LGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEK 363

Query: 204 AFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           AF L  ++ R  ++ P+  TY +++ G C++ K+  A  L  +MK +G+ P+    N   
Sbjct: 364 AFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPN---VN--- 417

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY  LI G CK    D A EL+  M  +G  P+  TY ++I+ +    +A E+
Sbjct: 418 -TYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEA 470



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 12/300 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ P+  TY + ++G CK G  + A  ++  M + G  P   TYN +ID  C K  
Sbjct: 407 MKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSR 466

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+   ++    G+     TY +LI E   +  + +A      M + G   D    NI
Sbjct: 467 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNI 526

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +CR    K++  L   ++  G+ PT  TYTS+I    K+     A + F N    G
Sbjct: 527 LIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHG 586

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD   + +LI G C    ++ A  L + M    + P EVT  TL +  C++     A 
Sbjct: 587 CVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSASAM 646

Query: 241 RLLDQM-KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L+ + K+  I+           T   L++ LC  ++  +A    ++++ K  + D  T
Sbjct: 647 IVLEPLDKKLWIR-----------TVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVT 695


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 162/342 (47%), Gaps = 28/342 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P ++T    +  +C  G  E+A R+   MK  G  P   TY  LI G C  G L++A
Sbjct: 315 GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVA 374

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M + G+ P   TYN LI+ L+  R++  A  +L  MG  G  P+ +TYN +I G
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G+ KKA  + + M+ +G    ++TY ++I           A ++ +     G  PD
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LI G C    +E AF L  EM    + P+EVTY  L+ G C+  K++ A  LL+
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            MKR G +P+  ++N                            P  +TY A+I GLCKN 
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              LA E+  +M+ +G  P+  TY SLI  +    K  E+ N
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 656



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY   + G C  G  ++A  ++  M + G     VTYNT+I GYC+ GN
Sbjct: 416 MGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M   G  P   +Y  LI       KM  A  +  EM + G+ P+ +TY  
Sbjct: 476 TTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTA 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+      A SL + M   G +P + TY  LI  L+KQN    A++L +  + +G
Sbjct: 536 LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V + A+IDG C NG+   A  +  +M      P+ +TY++L+    ++GKVEEA 
Sbjct: 596 IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE 655

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++R G+ PD I       TY  +I+    + + + A   L  M+  G  P   TY
Sbjct: 656 NLFAELERHGLIPDEI-------TYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTY 708

Query: 301 FSLIEGI 307
             LI+G+
Sbjct: 709 GVLIKGL 715



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 66/375 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +PD ++Y   + G CK  ++E A  +  +M ++GL P  VTY  LIDGYC    
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M + G  P   TYN+LIH L  +     A+++ K M E+GI P+ +TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G+   A  + ++MI +G  P +LTY+SLI  L ++ ++ EA+ LF      G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM---------------------------DR 213
           ++PD + +  +I+ +  +G +E AF+ L  M                            R
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR 725

Query: 214 MKVHPDEV--------------------------------TYNTLMHGRCRQGKVEEARR 241
           +   PD V                                  N L+      G+  EA  
Sbjct: 726 LAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANE 785

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL  M  +G+ PD  +       YN+L+  L + +  DLA  + + M ++G     N Y 
Sbjct: 786 LLGSMISQGLCPDQEA-------YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYK 838

Query: 302 SLIEGIASVDKAAES 316
            LI  +  + +  E+
Sbjct: 839 ELICALCQLHRRKEA 853



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 172/340 (50%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GVQP+   Y + ++ +CK+G + +A  +++++ E+ + P   TY ++I G+C K +
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M K+G  P   TY+ LI+ L    ++ EA D+++EM   GI+P + T   
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C  G  + A+ L  +M +KG +P + TYT+LI  L     +  A  LF      G
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 385

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +NALI+    N  I+ AF +L  M R    P+ VTYN ++ G C  G  ++A 
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +++ M +RG   + +++N                            P   +Y  LI G 
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           CK  + + A  L  EMV  G+ P++ TY +LI+G    +K
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 146/339 (43%), Gaps = 47/339 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +P+  TY   + G+ K+     A  + + M E G+ P  VTY  +IDG C  G+
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A    ++M++QG +P   TY+ LI  L  E K+ EA+++  E+   G++PD ITY  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  Y   G  + AF+    MI  G QPT+ TY  LI  L  +N  + ADQ         
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRL------A 727

Query: 181 MLPDIV--------------------------------MFNALIDGHCTNGNIERAFSLL 208
            LPD+V                                + NAL+    T G    A  LL
Sbjct: 728 ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
             M    + PD+  YN+L+    R   V+ A  +   M  +G +   +  N     Y  L
Sbjct: 788 GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCE---VHLN----GYKEL 840

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           I  LC+      A      M+ +   PDD     LI+G+
Sbjct: 841 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGL 879



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 7/275 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
            L+ + ++GL      Y+ L+      G           M+ +G+ P    YN +I+ L 
Sbjct: 167 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 226

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            +  + +A+ ++K++ E  + PD+ TY  +I G+CR  +   A  + ++M  +G +P  +
Sbjct: 227 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 286

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY++LI  L    R+ EA  L    +  G+LP        I   C  G  E A+ L  +M
Sbjct: 287 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 346

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                 P+  TY  L+ G C  G ++ A  L  +M R G+ P+ +       TYNALI  
Sbjct: 347 KNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV-------TYNALINI 399

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           L +N+    A  +L  M   G +P+  TY  +I+G
Sbjct: 400 LVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 7/254 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           LI    +K  +    SF D + + G+      Y+ L+  L          D    M  +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           + P+ + YN +IN  C+ GN   A ++  ++    + P   TYTS+I    +++ +  A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           Q+F     +G  P+ V ++ LI+G C +G +  AF L++EM    + P   T    +   
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C  G  E+A RL   MK +G +P+         TY ALI GLC +    +A  L   M  
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPN-------VYTYTALISGLCVSGLLKVAIGLFHRMSR 383

Query: 291 KGITPDDNTYFSLI 304
            G+ P+  TY +LI
Sbjct: 384 DGVFPNTVTYNALI 397



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 20/301 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY S +  + +EG++EEA  +  +++ +GL+P  +TY  +I+ Y   G 
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD-SITYN 119
           +E AF+F   M+K G  PT  TY +LI  L  + + + AD  L  + +  +VP+ S  Y 
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRLAALPD--VVPNCSFGYQ 741

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
                     +AK A       +  G+  ++    +L+  LS   R  EA++L  + +++
Sbjct: 742 TTDQDAVSVMSAKLA------ELDPGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQ 793

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD   +N+L+       N++ A  + K M           Y  L+   C+  + +EA
Sbjct: 794 GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEA 853

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R   + M  R       ++NP  +    LI GL ++   DL  E L  M ++   P  + 
Sbjct: 854 RITFENMLMR-------TWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 906

Query: 300 Y 300
           Y
Sbjct: 907 Y 907



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 107/272 (39%), Gaps = 24/272 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK-- 58
           ++  G+ PD  TY   +      G++E A   L +M + G  PT  TY  LI G  N+  
Sbjct: 661 LERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYL 720

Query: 59  -GNLEMA--------FSFRDEMVKQGIMPTAS-------------TYNLLIHELLMERKM 96
             +  +A         SF  +   Q  +   S               N L+  L    + 
Sbjct: 721 LADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRW 780

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
            EA+++L  M  +G+ PD   YN L+    R  N   A  +   M  +G +  +  Y  L
Sbjct: 781 FEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKEL 840

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I  L + +R  EA   FEN L +   PD V+   LIDG   +G  +     L  M+  + 
Sbjct: 841 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRY 900

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            P    Y  L     ++   +     + ++KR
Sbjct: 901 MPSFHIYTILAREASKKRSWKHVAGCITKVKR 932



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           V P+ + YN +++  C+ G V +A  ++ ++    + PD         TY ++I G C+ 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPD-------TFTYTSMILGHCRK 263

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + D A ++  +M  +G  P+  TY +LI G+    +  E+
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 163/311 (52%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++ D + +   ++   +  R++ A  +L ++ + G  P AVT+++LI+G C +     A 
Sbjct: 115 IERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAM 174

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F DEMV  G  P   TYN +I       K   A  +LK+M + G  PD + YN +I+G 
Sbjct: 175 EFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGL 234

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+     +A  +  E+  KG++P + TY+ L+  L   ++  EA  LF   ++  ++PD+
Sbjct: 235 CKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDV 294

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V FN L+D  C  G +  A  ++K M    V P+  TYN+LM+G C Q KV EAR + D 
Sbjct: 295 VTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDA 354

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G  P+ +S       YN LI G CK Q  D A EL  EM  +G+ P+   Y +LI 
Sbjct: 355 MITKGCMPNVVS-------YNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLIS 407

Query: 306 GIASVDKAAES 316
           G+    +  E+
Sbjct: 408 GLCQAGRHCEA 418



 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD+ T+ S ++G+C E +   A    ++M  +G  P   TYNT+I G+C  G   +A
Sbjct: 149 GFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVA 208

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M K G  P    YN +I  L  +R + EA D+  E+  KG+ PD  TY+IL++G
Sbjct: 209 VGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHG 268

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     ++A +L +EM+   I P ++T+  L+  L K+  + EA  + +  + KG+ P+
Sbjct: 269 LCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPN 328

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +N+L++G+C    +  A  +   M      P+ V+YN L++G C+  +++EAR L D
Sbjct: 329 YATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFD 388

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  RG+ P+  +FN     YN LI GLC+      A EL ++M ++G +PD  T   L+
Sbjct: 389 EMSFRGLIPN--TFN-----YNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILL 441

Query: 305 EGIASV 310
           + +  +
Sbjct: 442 DSLCKL 447



 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 160/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G QP+ +TY + + G CK G+   A  +L++M + G  P  V YNT+IDG C    
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRL 239

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     E+  +G+ P   TY++L+H L    +  EA  +  EM    I+PD +T+NI
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+ G   +A  +   MI KG++P   TY SL+     QN++ EA  +F+  + KG
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++V +N LI+G+C    I+ A  L  EM    + P+   YNTL+ G C+ G+  EAR
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M+ +G  PD +       T   L+  LCK    D A  L R M    + P+  TY
Sbjct: 420 ELFKDMQAQGCSPDLV-------TCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTY 472

Query: 301 FSLIEGI 307
             LI  +
Sbjct: 473 DILIRAM 479



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 132/236 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K +GV+PD +TY   + G+C   + EEAS +  +M    ++P  VT+N L+D  C +G 
Sbjct: 250 IKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGM 309

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A      M+++G+ P  +TYN L++   ++ K+ EA  +   M  KG +P+ ++YNI
Sbjct: 310 LSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNI 369

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A  L DEM  +G+ P    Y +LI  L +  R  EA +LF++  A+G
Sbjct: 370 LINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQG 429

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             PD+V    L+D  C  G ++ A  L + M    + P+ VTY+ L+    + GK+
Sbjct: 430 CSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 56  CNKGNLEMA-FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           C+  N+E A FSF + M+ +  +P    ++ L+  L+  +       + K +    I  D
Sbjct: 60  CSLTNIEDALFSF-NHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERD 118

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
              +NILIN + R      AFS+  ++I  G +P  +T++SLI  L  +++   A + F+
Sbjct: 119 VFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFD 178

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             +A G  P++  +N +I G C  G    A  LLK+MD+    PD V YNT++ G C+  
Sbjct: 179 EMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDR 238

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            V EA  +  ++K +G++PD         TY+ L+ GLC + + + A  L  EM+S  I 
Sbjct: 239 LVSEALDIFSEIKGKGVRPD-------VFTYSILMHGLCNSDQKEEASALFNEMMSLNIM 291

Query: 295 PDDNTYFSLIEGIA 308
           PD  T+  L++ + 
Sbjct: 292 PDVVTFNILVDKLC 305



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 110/203 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  + PD  T+   V  +CKEG L EA  +++ M E G+ P   TYN+L++GYC +  
Sbjct: 285 MMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNK 344

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M+ +G MP   +YN+LI+     +++ EA ++  EM  +G++P++  YN 
Sbjct: 345 VFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNT 404

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G   +A  L  +M  +G  P ++T T L+  L K   +  A +LF       
Sbjct: 405 LISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSC 464

Query: 181 MLPDIVMFNALIDGHCTNGNIER 203
           + P++V ++ LI     +G I R
Sbjct: 465 LKPNLVTYDILIRAMYKSGKIYR 487


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 62  LETKGNQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M  A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 242 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 HDLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM  A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++ A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 166/312 (53%), Gaps = 7/312 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M + G  PD  T+ + ++G+C EG + +A   L +     L P  ++Y  LI G+C +G 
Sbjct: 1109 MFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGE 1168

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L +A     EM+ +G  P   T+  LIH L++  K+ EA  + ++M E+ + PD   YN+
Sbjct: 1169 LMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNV 1228

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+G C+      A ++ +EM+ K +QP    Y +LI    +   + +A ++FE    KG
Sbjct: 1229 LISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 1288

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PDIV  NA+I G+C  G +  A   +  M ++   PDE TY T++ G  +QG +  A 
Sbjct: 1289 VCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGAL 1348

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            R L  M +R  KP+ +       TY++LI G CK  + D AE L   M ++ ++P+  TY
Sbjct: 1349 RWLCDMIKRKCKPNVV-------TYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTY 1401

Query: 301  FSLIEGIASVDK 312
              LI  +   DK
Sbjct: 1402 TILIGSLFKKDK 1413



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 153/299 (51%), Gaps = 7/299 (2%)

Query: 9    DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
            D+Y+    V G+C E R+EE  +++E     G +P  V YN LIDGYC +G++       
Sbjct: 977  DNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLL 1036

Query: 69   DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             EM   G +PT  TY  LI+ L  +  + +   +  EM ++G  P+   YN +I+  C C
Sbjct: 1037 GEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNC 1096

Query: 129  GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
             +A +A  +  +M   G  P ++T+ +LI  L  +  + +A+      + + + P+ + +
Sbjct: 1097 RSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSY 1156

Query: 189  NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
              LI G C  G +  A  LL EM      PD VT+  L+HG    GKV EA  + ++M  
Sbjct: 1157 TPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE 1216

Query: 249  RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            R + PD    N     YN LI GLCK +    A+ +L EM+ K + PD+  Y +LI+G 
Sbjct: 1217 RQVFPD---VN----IYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGF 1268



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 152/312 (48%), Gaps = 7/312 (2%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G  P    Y   + G C+ G +     +L +M+ NG +PT VTY +LI+    KG+LE  
Sbjct: 1008 GCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKI 1067

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             S   EM K+G  P    YN +I  L   R   +A  +LK+M   G  PD IT+N LI G
Sbjct: 1068 GSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITG 1127

Query: 125  YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             C  G+ +KA     E I + + P  L+YT LI     +  ++ A  L    + +G  PD
Sbjct: 1128 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPD 1187

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +V F ALI G    G +  A  + ++M   +V PD   YN L+ G C++  +  A+ +L+
Sbjct: 1188 VVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILE 1247

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            +M  + ++PD          Y  LI G  +++    A ++   M  KG+ PD  +  ++I
Sbjct: 1248 EMLEKNVQPDE-------FVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMI 1300

Query: 305  EGIASVDKAAES 316
            +G       +E+
Sbjct: 1301 KGYCQFGMMSEA 1312



 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 161/310 (51%), Gaps = 11/310 (3%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M++ G  P   TYGS ++ + K+G LE+   +  +M++ G  P    YN++ID  CN  +
Sbjct: 1039 METNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRS 1098

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               A     +M   G  P   T+N LI  L  E  + +A+  L+E   + + P+ ++Y  
Sbjct: 1099 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTP 1158

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+G+C  G    A  L  EM+ +G  P ++T+ +LI  L    ++ EA  + E    + 
Sbjct: 1159 LIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQ 1218

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PD+ ++N LI G C    +  A ++L+EM    V PDE  Y TL+ G  R   + +AR
Sbjct: 1219 VFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDAR 1278

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL--REMVSKGITPDDN 298
            ++ + M+ +G+ PD +S        NA+I+G C  Q G ++E +L    M   G  PD+ 
Sbjct: 1279 KIFEFMEHKGVCPDIVS-------CNAMIKGYC--QFGMMSEAILCMSNMRKVGCIPDEF 1329

Query: 299  TYFSLIEGIA 308
            TY ++I G A
Sbjct: 1330 TYTTVISGYA 1339



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 43/356 (12%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  RG  PD  T+G+ + G+   G++ EA  + E+M E  + P    YN LI G C K  
Sbjct: 1179 MMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRM 1238

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A +  +EM+++ + P    Y  LI   +    + +A  + + M  KG+ PD ++ N 
Sbjct: 1239 LPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNA 1298

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +I GYC+ G   +A      M   G  P   TYT++I   +KQ  +  A +   + + + 
Sbjct: 1299 MIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRK 1358

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              P++V +++LI+G+C  G+ + A  L   M    + P+ VTY  L+    ++ KV  A 
Sbjct: 1359 CKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAG 1418

Query: 241  RLLDQMKRRGIKPDHISF------------------------------------------ 258
               + M      P+ ++                                           
Sbjct: 1419 LYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDI 1478

Query: 259  -NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
             +P    YNA+I  LC++     A +    M  KG  P+  T+ SL+ G  SV K+
Sbjct: 1479 GDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKS 1534



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 50/293 (17%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  + VQPD + Y + + G  +   L +A ++ E M+  G+ P  V+ N +I GYC  G 
Sbjct: 1249 MLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGM 1308

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A      M K G +P   TY  +I     +  +  A   L +M ++   P+ +TY+ 
Sbjct: 1309 MSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSS 1368

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LINGYC+ G+   A  L   M  + + P ++TYT LI  L K+++++ A   FE  L   
Sbjct: 1369 LINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNH 1428

Query: 181  MLPDIVM--------------------------------------------------FNA 190
              P+ V                                                   +NA
Sbjct: 1429 CSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNA 1488

Query: 191  LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +I   C +  +  A      M +    P+ +T+ +L++G C  GK    R +L
Sbjct: 1489 IIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTIL 1541



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 121/276 (43%), Gaps = 43/276 (15%)

Query: 33   LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIMPTASTYNLLIHELL 91
            L+ M   G  PT      L+  Y + G L  A    + + +Q G +P  +  N L+  L+
Sbjct: 895  LQSMSLAGAAPTRACLGALVAAYADAGMLGKATEMCERVREQYGSLPEVTHCNRLLKLLV 954

Query: 92   MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
             +R+  +A  +  EM  K    D+ +  +L+ G C                         
Sbjct: 955  EQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCL------------------------ 990

Query: 152  TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
                       + R+ E  +L E     G +P +V +N LIDG+C  G++ R   LL EM
Sbjct: 991  -----------ERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEM 1039

Query: 212  DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            +     P  VTY +L++   ++G +E+   L  +M++RG       F+P    YN++I  
Sbjct: 1040 ETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRG-------FSPNVQIYNSVIDA 1092

Query: 272  LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            LC  +    A  +L++M + G  PD  T+ +LI G+
Sbjct: 1093 LCNCRSATQAMVILKQMFASGCDPDIITFNTLITGL 1128



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 90/247 (36%), Gaps = 50/247 (20%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+  G  PD +TY + +SG  K+G L  A R L  M +    P  VTY++LI+GYC  G+
Sbjct: 1319 MRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGD 1378

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--- 117
             + A      M  + + P   TY +LI  L  + K++ A    + M      P+ +T   
Sbjct: 1379 TDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHY 1438

Query: 118  -----------------------------------------------YNILINGYCRCGN 130
                                                           YN +I   CR   
Sbjct: 1439 LVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNM 1498

Query: 131  AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             ++A    + M  KG  P  +T+ SL++      + +    +  N   +     I  +  
Sbjct: 1499 LREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTILPNEFQQEEFEIIFRYKF 1558

Query: 191  LIDGHCT 197
            L D + T
Sbjct: 1559 LFDQYAT 1565


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 180/355 (50%), Gaps = 58/355 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD+ TY   ++ +C+  ++E+A  + ++MK  G++P   TY  LID +C  G 
Sbjct: 446 MMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGL 505

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A S+ DEM   G  P+  TY  L+H  L  +++ +A D+   M + G  P++ITY+ 
Sbjct: 506 IEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSA 565

Query: 121 LINGYCRCGNAKKAFSLHDEMI----------------HKGIQPTMLTYTSLIFVLSKQN 164
           L++G C+ G ++KA  ++ +MI                   I P ++TY +LI  L K +
Sbjct: 566 LVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAH 625

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER--------------------- 203
           ++++A +L +   + G  P+ ++++ALIDG C  G ++                      
Sbjct: 626 KVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYT 685

Query: 204 --------------AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
                         A  +L +M      P+ VTY  ++ G CR G+ ++A +LL  M++R
Sbjct: 686 SLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKR 745

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           G        NP  +TY +LI GL K+ + D++ +L  +M+++G  P+  TY  LI
Sbjct: 746 GC-------NPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLI 793



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 169/341 (49%), Gaps = 31/341 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+  TYG+ + G+CK  ++ +A  +L+ M  NG  P  + Y+ LIDG+C  G L+ A 
Sbjct: 607 IAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQ 666

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M K G +PT  TY  LI  +  +R++  A  +L +M E    P+ +TY  +I+G 
Sbjct: 667 EVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGL 726

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR G  +KA  L   M  +G  P ++TYTSLI  L K  ++  + QLF   + +G  P+ 
Sbjct: 727 CRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNY 786

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT-YNTLMHGRCRQ-----GKVEEA 239
           V +  LI+  C  G ++ A SLL EM +    P  V  Y +++ G  ++     G +EE 
Sbjct: 787 VTYRVLINHCCAAGLLDEAHSLLSEM-KQTYWPKYVQGYCSVVQGFSKKFIASLGLLEEL 845

Query: 240 RR------------LLDQMKRRGIKPDHI-----------SFNPT-RLTYNALIQGLCKN 275
                         L+D   + G     +           S N T + TY +LIQ LC  
Sbjct: 846 ESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLA 905

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + + A EL  E+  KG+ P+ + +  LI+G+  V+K  E+
Sbjct: 906 SQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEA 946



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 158/329 (48%), Gaps = 29/329 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEE------ASRMLEQMKENGLVPTAVTYNTLIDG 54
           M   G  P    Y  F+  +C    L        A ++ E+M  +  V   V        
Sbjct: 370 MAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARC 429

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
            C  G  + AF     M+++G +P  STY+ +I  L    K+ +A  + +EM   G++PD
Sbjct: 430 LCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPD 489

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             TY ILI+ +C+ G  ++A S  DEM   G  P+++TYT+L+    K  ++ +A  +F 
Sbjct: 490 VYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFH 549

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM----DRM------------KVHP 218
             +  G  P+ + ++AL+DG C  G  ++A  +  +M    D +             + P
Sbjct: 550 RMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAP 609

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           + VTY  L+ G C+  KV +A+ LLD M   G +P+HI        Y+ALI G CK  + 
Sbjct: 610 NVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHI-------IYDALIDGFCKVGKL 662

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGI 307
           D A+E+   M   G  P  +TY SLI+ +
Sbjct: 663 DNAQEVFFRMSKCGYLPTVHTYTSLIDAM 691



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 157/405 (38%), Gaps = 96/405 (23%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ------------------------- 35
           M   G   D +T G F   +CKEGR  +A  M+E+                         
Sbjct: 233 MSELGFCTDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDE 292

Query: 36  -------MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
                  M+ N  +P  VTY TL+ G+  K  L         M+ +G  P  S +N L+H
Sbjct: 293 AISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVH 352

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC---------------------- 126
                R    A  +L  M   G  P  + YNI I   C                      
Sbjct: 353 SYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEML 412

Query: 127 ---------------RC----GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
                          RC    G   KAF +   M+ KG  P   TY+ +I  L +  ++ 
Sbjct: 413 ASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVE 472

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           +A  LF+   + G++PD+  +  LID  C  G IE+A S   EM+ +   P  VTY  L+
Sbjct: 473 KAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALL 532

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           H   +  +V +A  +  +M   G  P+ I       TY+AL+ GLCK  E   A E+  +
Sbjct: 533 HAYLKTKQVPQASDIFHRMVDAGCAPNTI-------TYSALVDGLCKAGESQKACEVYAK 585

Query: 288 MV----------------SKGITPDDNTYFSLIEGIASVDKAAES 316
           M+                +  I P+  TY +LI+G+    K  ++
Sbjct: 586 MIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDA 630



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 129/335 (38%), Gaps = 51/335 (15%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V   C+ G   +A   L ++K+ G  P+  TYN L+      G ++M F  + EM + G 
Sbjct: 179 VRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGF 238

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
                T       L  E +  +A  M++    K    D++    +I+G        +A S
Sbjct: 239 CTDKFTVGCFAQALCKEGRWSDALVMIEREDFK---LDTVLCTQMISGLMEASLFDEAIS 295

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
               M      P ++TY +L+    K+ ++    ++    + +G  P+  +FN+L+  +C
Sbjct: 296 FLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYC 355

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR------------------------ 232
              +   A+ LL  M      P  V YN  +   C                         
Sbjct: 356 NARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASS 415

Query: 233 -----------------QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
                             GK ++A +++  M R+G  PD         TY+ +I  LC+ 
Sbjct: 416 CVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPD-------TSTYSKVITFLCEA 468

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            + + A  L +EM S G+ PD  TY  LI+    V
Sbjct: 469 MKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKV 503



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 36/217 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG  P+  TY S + G+ K G+++ + ++  QM   G  P  VTY  LI+  C  G 
Sbjct: 742 MEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGL 801

Query: 61  LEMAFSFRDEMVK---------------------------------QGIMPTASTYNLLI 87
           L+ A S   EM +                                  G++  A  Y LLI
Sbjct: 802 LDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLI 861

Query: 88  HELLMERKMVEADDMLKEMGEKGI---VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                  ++ +A ++ KEM E      +    TY  LI   C     +KAF L+ E+  K
Sbjct: 862 DSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRK 921

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           G+ P +  +  LI  L K N+  EA QL  +   +G+
Sbjct: 922 GVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGV 958



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 39/267 (14%)

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G   T + YN L   L  + +    + +L+E+GE          N+++   CR G   KA
Sbjct: 132 GYSHTGACYNALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKA 191

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM--------------IEADQLFENFLAKG 180
                 +   G +P+  TY +L+ VL+   +M                 D+      A+ 
Sbjct: 192 LEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQA 251

Query: 181 MLP------------------DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           +                    D V+   +I G       + A S L  M      P+ VT
Sbjct: 252 LCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVT 311

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y TL+ G  ++ ++   +R++  M   G  P     NP+   +N+L+   C  ++   A 
Sbjct: 312 YRTLLAGFLKKKQLGWCKRIISMMMNEGCNP-----NPS--LFNSLVHSYCNARDYPYAY 364

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIAS 309
           +LL  M   G  P    Y   I  I S
Sbjct: 365 KLLNRMAGCGCPPGYVVYNIFIGSICS 391


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 162/342 (47%), Gaps = 28/342 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P ++T    +  +C  G  E+A R+   MK  G  P   TY  LI G C  G L++A
Sbjct: 315 GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVA 374

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M + G+ P   TYN LI+ L+  R++  A  +L  MG  G  P+ +TYN +I G
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G+ KKA  + + M+ +G    ++TY ++I           A ++ +     G  PD
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LI G C    +E AF L  EM    + P+EVTY  L+ G C+  K++ A  LL+
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            MKR G +P+  ++N                            P  +TY A+I GLCKN 
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              LA E+  +M+ +G  P+  TY SLI  +    K  E+ N
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 656



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY   + G C  G  ++A  ++  M + G     VTYNT+I GYC+ GN
Sbjct: 416 MGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M   G  P   +Y  LI       KM  A  +  EM + G+ P+ +TY  
Sbjct: 476 TTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTA 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+      A SL + M   G +P + TY  LI  L+KQN    A++L +  + +G
Sbjct: 536 LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V + A+IDG C NG+   A  +  +M      P+ +TY++L+    ++GKVEEA 
Sbjct: 596 IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE 655

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++R G+ PD I       TY  +I+    + + + A   L  M+  G  P   TY
Sbjct: 656 NLFAELERHGLIPDEI-------TYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTY 708

Query: 301 FSLIEGI 307
             LI+G+
Sbjct: 709 GVLIKGL 715



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 66/375 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +PD ++Y   + G CK  ++E A  +  +M ++GL P  VTY  LIDGYC    
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M + G  P   TYN+LIH L  +     A+++ K M E+GI P+ +TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G+   A  + ++MI +G  P +LTY+SLI  L ++ ++ EA+ LF      G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM---------------------------DR 213
           ++PD + +  +I+ +  +G +E AF+ L  M                            R
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR 725

Query: 214 MKVHPDEV--------------------------------TYNTLMHGRCRQGKVEEARR 241
           +   PD V                                  N L+      G+  EA  
Sbjct: 726 LAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANE 785

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL  M  +G+ PD  +       YN+L+  L + +  DLA  + + M ++G     N Y 
Sbjct: 786 LLGSMISQGLCPDQEA-------YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYK 838

Query: 302 SLIEGIASVDKAAES 316
            LI  +  + +  E+
Sbjct: 839 ELICALCQLHRRKEA 853



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 172/340 (50%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GVQP+   Y + ++ +CK+G + +A  +++++ E+ + P   TY ++I G+C K +
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M K+G  P   TY+ LI+ L    ++ EA D+++EM   GI+P + T   
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C  G  + A+ L  +M +KG +P + TYT+LI  L     +  A  LF      G
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDG 385

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +NALI+    N  I+ AF +L  M R    P+ VTYN ++ G C  G  ++A 
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +++ M +RG   + +++N                            P   +Y  LI G 
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           CK  + + A  L  EMV  G+ P++ TY +LI+G    +K
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 146/339 (43%), Gaps = 47/339 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +P+  TY   + G+ K+     A  + + M E G+ P  VTY  +IDG C  G+
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A    ++M++QG +P   TY+ LI  L  E K+ EA+++  E+   G++PD ITY  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  Y   G  + AF+    MI  G QPT+ TY  LI  L  +N  + ADQ         
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRL------A 727

Query: 181 MLPDIV--------------------------------MFNALIDGHCTNGNIERAFSLL 208
            LPD+V                                + NAL+    T G    A  LL
Sbjct: 728 ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
             M    + PD+  YN+L+    R   V+ A  +   M  +G +   +  N     Y  L
Sbjct: 788 GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCE---VHLN----GYKEL 840

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           I  LC+      A      M+ +   PDD     LI+G+
Sbjct: 841 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGL 879



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 7/274 (2%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           L+ + ++GL      Y+ L+      G           M+ +G+ P    YN +I+ L  
Sbjct: 168 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 227

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +  + +A+ ++K++ E  + PD+ TY  +I G+CR  +   A  + ++M  +G +P  +T
Sbjct: 228 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y++LI  L    R+ EA  L    +  G+LP        I   C  G  E A+ L  +M 
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
                P+  TY  L+ G C  G ++ A  L  +M R G+ P+ +       TYNALI  L
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTV-------TYNALINIL 400

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +N+    A  +L  M   G +P+  TY  +I+G
Sbjct: 401 VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 7/254 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           LI    +K  +    SF D + + G+      Y+ L+  L          D    M  +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           + P+ + YN +IN  C+ GN   A ++  ++    + P   TYTS+I    +++ +  A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           Q+F     +G  P+ V ++ LI+G C +G +  AF L++EM    + P   T    +   
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C  G  E+A RL   MK +G +P+         TY ALI GLC +    +A  L   M  
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPN-------VYTYTALISGLCVSGILKVAIGLFHRMSR 383

Query: 291 KGITPDDNTYFSLI 304
            G+ P+  TY +LI
Sbjct: 384 DGVFPNTVTYNALI 397



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 20/301 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY S +  + +EG++EEA  +  +++ +GL+P  +TY  +I+ Y   G 
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD-SITYN 119
           +E AF+F   M+K G  PT  TY +LI  L  + + + AD  L  + +  +VP+ S  Y 
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRLAALPD--VVPNCSFGYQ 741

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
                     +AK A       +  G+  ++    +L+  LS   R  EA++L  + +++
Sbjct: 742 TTDQDAVSVMSAKLA------ELDPGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQ 793

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD   +N+L+       N++ A  + K M           Y  L+   C+  + +EA
Sbjct: 794 GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEA 853

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R   + M  R       ++NP  +    LI GL ++   DL  E L  M ++   P  + 
Sbjct: 854 RITFENMLMR-------TWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 906

Query: 300 Y 300
           Y
Sbjct: 907 Y 907



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 99/250 (39%), Gaps = 24/250 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK-- 58
           ++  G+ PD  TY   +      G++E A   L +M + G  PT  TY  LI G  N+  
Sbjct: 661 LERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYL 720

Query: 59  -GNLEMA--------FSFRDEMVKQGIMPTAS-------------TYNLLIHELLMERKM 96
             +  +A         SF  +   Q  +   S               N L+  L    + 
Sbjct: 721 LADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRW 780

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
            EA+++L  M  +G+ PD   YN L+    R  N   A  +   M  +G +  +  Y  L
Sbjct: 781 FEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKEL 840

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I  L + +R  EA   FEN L +   PD V+   LIDG   +G  +     L  M+  + 
Sbjct: 841 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRY 900

Query: 217 HPDEVTYNTL 226
            P    Y  L
Sbjct: 901 MPSFHIYTIL 910



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           V P+ + YN +++  C+ G V +A  ++ ++    + PD         TY ++I G C+ 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPD-------TFTYTSMILGHCRK 263

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + D A ++  +M  +G  P+  TY +LI G+    +  E+
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 59/149 (39%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + VS +   GR  EA+ +L  M   GL P    YN+L+       N+++A      M  Q
Sbjct: 769 ALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQ 828

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G     + Y  LI  L    +  EA    + M  +   PD +   +LI+G  R G     
Sbjct: 829 GCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLC 888

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
                 M  +   P+   YT L    SK+
Sbjct: 889 MEFLHIMETRRYMPSFHIYTILAREASKK 917


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 171/349 (48%), Gaps = 42/349 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+ + Y + +  +CK  R ++A R+ ++M   GL P  VTY  LI   C +G +E A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M  +GI  T   YN LI+    +  +  A  +L  M ++G+ P + +Y+ LI G
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 452

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR G+   A  LH EM  +GI     T+T+LI    K  +M EA +LF+  +   ++P+
Sbjct: 453 LCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC------------- 231
            V FN +I+G+C  GNI +AF L  +M  M + PD  TY +L+ G C             
Sbjct: 513 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 572

Query: 232 ----------------------RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                                 R+G+  E   L D+M  RG+K D +SF  T + Y AL 
Sbjct: 573 DLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSF--TIIVYAAL- 629

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               K  + + +  L REM  +G+ PDD  Y  +I+ ++  +   ++ N
Sbjct: 630 ----KQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 165/310 (53%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+  +  Y   + G+CK  R++EA  +   M   G+    VTY TL+ G+C    
Sbjct: 224 MESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEE 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LEMA     +M++ G +P+ +  + +I EL  +  + EA  +  ++G+ G+VP+   YN 
Sbjct: 284 LEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNA 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+      A  L  EM  +G++P  +TY  LI  L K+  + +A  LF+    KG
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +  +N+LI+G+C  G+++RA  LL  M +  + P   +Y+ L+ G CR G +  A 
Sbjct: 404 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAM 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RGI  ++        T+ ALI G CK+++ D A  L  +M+   + P++ T+
Sbjct: 464 ELHREMAERGIAWNN-------YTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 301 FSLIEGIASV 310
             +IEG   V
Sbjct: 517 NVMIEGYCLV 526



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 163/318 (51%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  D  TY + V G C+   LE A R+   M   G VP+    + +ID    K  
Sbjct: 259 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKEL 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AFS   ++   G++P    YN LI +L    +  +AD + KEM  +G+ P+ +TY I
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G  + A  L D+M  KGI+ T+  Y SLI    KQ  +  A  L    + +G
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    ++ LI G C NG++  A  L +EM    +  +  T+  L++G C+  K++EA 
Sbjct: 439 LTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAA 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL D+M    + P+ ++F       N +I+G C       A +L  +MV  G+ PD+ TY
Sbjct: 499 RLFDKMIDSNVIPNEVTF-------NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTY 551

Query: 301 FSLIEGI---ASVDKAAE 315
            SLI G+   + V KA E
Sbjct: 552 RSLISGLCLTSGVSKANE 569



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 179/356 (50%), Gaps = 46/356 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++YT+ + ++G CK+ +++EA+R+ ++M ++ ++P  VT+N +I+GYC  GN
Sbjct: 469 MAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 528

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI--------------------------------- 87
           +  AF   D+MV+ G+ P   TY  LI                                 
Sbjct: 529 IRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTA 588

Query: 88  --HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
             + L  E +  E   +  EM  +G+  D +++ I++    +  + +K+  L  EM  +G
Sbjct: 589 LLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQG 648

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P  + YT +I  LSK+  MI+A   ++  +  G  P+ V    LI+  C +G +  A 
Sbjct: 649 VKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAE 708

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L KEM    V P++ TYN  +     +G +E+A+ L   M +      H++   + +++
Sbjct: 709 LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-----GHLA---SIVSF 760

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAESSN 318
           N LI+GLCK  +   A +L+R++   G +PD  +Y ++I  +     ++KA E  N
Sbjct: 761 NILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWN 816



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G+  + YT    +  + K  +   A  + ++M ++G+      Y   I  YC   NL+
Sbjct: 156 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 215

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M  +G+  +A  YN+L++ L    ++ EA ++   M   G+  D +TY  L+
Sbjct: 216 GARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLV 275

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+CR    + A  +  +MI  G  P+    + +I  L K+  + EA  L       GM+
Sbjct: 276 YGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMV 335

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +NALID  C N   + A  L KEM    + P+EVTY  L+H  C++G +E+A  L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M+ +GIK   ++  P    YN+LI G CK    D A  LL  MV +G+TP   +Y  
Sbjct: 396 FDKMRDKGIK---VTVYP----YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSP 448

Query: 303 LIEGIA 308
           LI G+ 
Sbjct: 449 LIAGLC 454



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 156/317 (49%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  D Y Y + +   C+   L+ A  ++ +M+  G+  +AV YN L+ G C    
Sbjct: 189 MLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMR 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   ++ MV  G+     TY  L++      ++  A  +  +M   G VP     + 
Sbjct: 249 VQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSF 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +    ++AFSL  ++   G+ P +  Y +LI  L K  R  +AD+LF+    +G
Sbjct: 309 MIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  LI   C  G IE A  L  +M    +      YN+L++G C+QG ++ AR
Sbjct: 369 LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR 428

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M + G+ P   S++P       LI GLC+N +   A EL REM  +GI  ++ T+
Sbjct: 429 GLLSGMVKEGLTPTAASYSP-------LIAGLCRNGDLSSAMELHREMAERGIAWNNYTF 481

Query: 301 FSLIEGIASVDKAAESS 317
            +LI G     K  E++
Sbjct: 482 TALINGFCKDKKMDEAA 498



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 43/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMC-----------------------------------KEGR 25
           M   G++PD+YTY S +SG+C                                   +EGR
Sbjct: 539 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGR 598

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
             E   + ++M   G+    V++  ++     + + E +     EM +QG+ P    Y  
Sbjct: 599 FTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTC 658

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L  E  M++A +   +M   G  P+++T+ +LIN  C+ G    A  L  EM+   
Sbjct: 659 MIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P   TY   +   + +  M +A  L    L +G L  IV FN LI G C  G I+ A 
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L++++      PD ++Y+T++H  C+ G + +A  L ++M  +G+KPD ++       Y
Sbjct: 778 DLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA-------Y 830

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           N  I+    + E D A  +   M+  G+ P+ +TY +L+ GI+
Sbjct: 831 NIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 873



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +  GI     T + ++F L K  +   A  LF+  L  G+  D  ++ A I  +C + N+
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  L+  M+   V    V YN LM+G C+  +V+EA  + + M   G+  D +     
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV----- 269

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
             TY  L+ G C+ +E ++A  +  +M+  G  P +
Sbjct: 270 --TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 170/334 (50%), Gaps = 27/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G +P++ TY   +  MC+EG +++A  +L  +   G  P  V YNT++ G+C+   
Sbjct: 224 MRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIER 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEMV++   P  +T N++I+ L  +  + +    L++M + G   + +TYN 
Sbjct: 284 WVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNA 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C  GN   A  L   M   G +P ++TY +++  L   +R  +A++L        
Sbjct: 344 VISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQND 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD   FN +I   C  G I +AF + K+M     +P+  TY+T++ G  + GK+E+A 
Sbjct: 404 RLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQAL 463

Query: 241 RLLDQMKRRGIKPDHI---------------------------SFNPTRLTYNALIQGLC 273
            LL++M  +G   D +                             +P  + YN ++ GLC
Sbjct: 464 ELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLC 523

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +N + D A ++L +MVS G  PD++TY  LIEG+
Sbjct: 524 RNGKTDYAIDVLADMVSCGCMPDESTYIILIEGL 557



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 157/300 (52%), Gaps = 7/300 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +  + TYG+ V G C+ G LE+A R++  M  +    +A  +N LI   C +G +  A
Sbjct: 123 GPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADA 182

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D M+ +G  P   TYN+L+      R   +A +++  M  +G  P+++TYN++I+ 
Sbjct: 183 LVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDA 242

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR G+  +A  L + +  +G +P  + Y +++       R ++AD++ +  + +   P+
Sbjct: 243 MCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPN 302

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
               N +I+  C  G +++    L++M +     + VTYN ++ G C QG V+ A  LL 
Sbjct: 303 EATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLS 362

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M+  G KPD +       TYN +++GLC     + AEEL+ +M      PD++T+ ++I
Sbjct: 363 NMQSFGCKPDIV-------TYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTII 415



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 10/309 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD       V  +C+ GR  +A+R++E     G   TA TY  L+DGYC  G LE A   
Sbjct: 94  PDVPLANRLVRDLCRRGRPADAARVVEAC---GPEATAATYGALVDGYCRAGLLEDARRV 150

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              M       +A  +N LIH L    ++ +A  +L  M  +G  PD +TYNIL+   C+
Sbjct: 151 VGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACK 210

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
               ++A  L D M  +G +P  +TY  +I  + ++  + +A +L  +  ++G  P+ V 
Sbjct: 211 GRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVN 270

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N ++ G C+      A  +L EM R    P+E T N +++  CR+G +++    L++M 
Sbjct: 271 YNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMS 330

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G   + +       TYNA+I G+C+    D A ELL  M S G  PD  TY ++++G+
Sbjct: 331 KHGCTANVV-------TYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGL 383

Query: 308 ASVDKAAES 316
            S D+  ++
Sbjct: 384 CSADRWEDA 392



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 1/251 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   +  TY + +SGMC++G ++ A  +L  M+  G  P  VTYNT++ G C+   
Sbjct: 329 MSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADR 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     +M +   +P  ST+N +I     +  +++A ++ K+M EKG  P+S TY+ 
Sbjct: 389 WEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYST 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  + G  ++A  L +EM +KG   T   Y  L   L+K++++ E  Q+       G
Sbjct: 449 IIGGLTKAGKMEQALELLNEMANKGFN-TDKMYRVLTESLNKEDKIEEVVQVVHKLQDSG 507

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V++N ++ G C NG  + A  +L +M      PDE TY  L+ G   +G  +EAR
Sbjct: 508 ISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEAR 567

Query: 241 RLLDQMKRRGI 251
            LL ++  R +
Sbjct: 568 ELLSRLCSRDV 578



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 34/153 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM------------------------ 36
           M  +G  P+S TY + + G+ K G++E+A  +L +M                        
Sbjct: 434 MPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKMYRVLTESLNKEDKI 493

Query: 37  ----------KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
                     +++G+ P  V YNT++ G C  G  + A     +MV  G MP  STY +L
Sbjct: 494 EEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIIL 553

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           I  L  E    EA ++L  +  + ++ +S+  N
Sbjct: 554 IEGLFYEGYSKEARELLSRLCSRDVLSNSLIKN 586


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 165/336 (49%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P   T+GS + G C   R+ +A  ++  M ++G  P  V YNTLIDG C  G 
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGE 191

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A    +EM K+G+     TYN L+  L    +  +A  ML++M ++ I PD +T+  
Sbjct: 192 LNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTA 251

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + GN  +A  L+ EMI   + P  +TY S+I  L    R+ +A + F+   +KG
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N LI G C    ++    L + M     + D  TYNTL+HG C+ GK+  A 
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371

Query: 241 RLLDQMKRRGIKPDHIS--------------------FNPTR--------LTYNALIQGL 272
            +   M  R + PD I+                    F+  R        + YN +I GL
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  + + A EL   +  +G+ PD  TY  +I G+ 
Sbjct: 432 CKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLC 467



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 153/299 (51%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+  D  TY + ++G+C  GR  +A+RML  M +  + P  VT+  LID +  +GN
Sbjct: 202 MEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGN 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM++  + P   TYN +I+ L M  ++ +A      M  KG  P+ +TYN 
Sbjct: 262 LDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNT 321

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+     +   L   M  +G    + TY +LI    +  ++  A  +F   +++ 
Sbjct: 322 LISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRR 381

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+    L+ G C NG IE A     +M   + +   V YN ++HG C+  KVE+A 
Sbjct: 382 VTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAW 441

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L  ++   G+KPD         TY  +I GLCKN     A+EL+R M  +GI    N 
Sbjct: 442 ELFCRLPVEGVKPD-------ARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 165/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D Y++   +   C+  RL  A  +L +M + G  P+ VT+ +L+ G+C    
Sbjct: 97  MELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNR 156

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AFS    MVK G  P    YN LI  L    ++  A ++L EM +KG+  D +TYN 
Sbjct: 157 IGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  +  +M+ + I P ++T+T+LI V  KQ  + EA +L++  +   
Sbjct: 217 LLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSS 276

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +N++I+G C +G +  A      M      P+ VTYNTL+ G C+   V+E  
Sbjct: 277 VDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGM 336

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G       FN    TYN LI G C+  +  +A ++   MVS+ +TPD  T+
Sbjct: 337 KLFQRMSCEG-------FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389

Query: 301 FSLIEGIASVDKAAESS 317
             L+ G+  V+   ES+
Sbjct: 390 CILLHGLC-VNGEIESA 405



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 147/288 (51%), Gaps = 7/288 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           R E      ++M+  G+     ++  LI  +C    L  A S   +M+K G  P+  T+ 
Sbjct: 86  RYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFG 145

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            L+H   +  ++ +A  ++  M + G  P+ + YN LI+G C+ G    A  L +EM  K
Sbjct: 146 SLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKK 205

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+   ++TY +L+  L    R  +A ++  + + + + PD+V F ALID     GN++ A
Sbjct: 206 GLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEA 265

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L KEM +  V P+ VTYN++++G C  G++ +A++  D M  +G  P+ +       T
Sbjct: 266 QELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVV-------T 318

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           YN LI G CK +  D   +L + M  +G   D  TY +LI G   V K
Sbjct: 319 YNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 132/255 (51%), Gaps = 7/255 (2%)

Query: 54  GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           G+ +    E AF+   EMV    +P+   +  L+      R+        ++M   GI  
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  ++ ILI+ +CRC     A S+  +M+  G +P+++T+ SL+      NR+ +A  L 
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
              +  G  P++V++N LIDG C NG +  A  LL EM++  +  D VTYNTL+ G C  
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G+  +A R+L  M +R I PD +       T+ ALI    K    D A+EL +EM+   +
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVV-------TFTALIDVFVKQGNLDEAQELYKEMIQSSV 277

Query: 294 TPDDNTYFSLIEGIA 308
            P++ TY S+I G+ 
Sbjct: 278 DPNNVTYNSIINGLC 292



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 7/184 (3%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           AF+L  EM+H    P+++ +T L+   +   R        +     G+  D+  F  LI 
Sbjct: 55  AFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH 114

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C    +  A S+L +M ++   P  VT+ +L+HG C   ++ +A  L+  M + G   
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG--- 171

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
               + P  + YN LI GLCKN E ++A ELL EM  KG+  D  TY +L+ G+    + 
Sbjct: 172 ----YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 314 AESS 317
           ++++
Sbjct: 228 SDAA 231


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 171/317 (53%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +PD  TY   + G CKEGRL+EA   L+++   G     +++N ++   C+ G 
Sbjct: 232 MRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGR 291

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M+++G  P+  T+N+LI+ L  +  + +A ++L+ M + G  P+S ++N 
Sbjct: 292 WMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNP 351

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C      +A    + M+ +G  P ++TY  L+  L K  ++ +A  +     +KG
Sbjct: 352 LIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG 411

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P ++ +N +IDG    G  E A  LL+EM    + PD +T  +++ G  R+GKV EA 
Sbjct: 412 CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAI 471

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +    +K  GIKP+          YN+++ GLCK Q+  LA + L +MV+ G  P + +Y
Sbjct: 472 KFFHYLKGFGIKPN-------AFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASY 524

Query: 301 FSLIEGIASVDKAAESS 317
            +LI+GI     A E+S
Sbjct: 525 TTLIKGITYEGLAEEAS 541



 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 160/311 (51%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P++ TY + +  +C  G+L++A ++L++  ++   P  VT   LID  C +  +  A 
Sbjct: 167 VAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAM 226

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +EM  +G  P   TYN+LI     E ++ EA   LK++   G   D I++N+++   
Sbjct: 227 KLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSL 286

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G    A  L   M+ KG  P+++T+  LI  L ++  + +A  + E     G  P+ 
Sbjct: 287 CSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNS 346

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             FN LI G C    I+RA   L+ M     +PD VTYN L+   C+ GKV++A  +L Q
Sbjct: 347 RSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQ 406

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +  +G  P  IS       YN +I GL K  + +LA ELL EM  KG+ PD  T  S++ 
Sbjct: 407 LSSKGCSPSLIS-------YNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVG 459

Query: 306 GIASVDKAAES 316
           G++   K  E+
Sbjct: 460 GLSREGKVHEA 470



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 153/308 (49%), Gaps = 10/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  PD     + +   CK GR + A+R++  ++E+G V  A +YN LI+ YC  G 
Sbjct: 95  MTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGE 154

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D      + P A+TY+ ++  L    K+ +A  +L    +    PD +T  +
Sbjct: 155 IEEALRVLDH---TSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTV 211

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+     +A  L +EM  KG +P ++TY  LI    K+ R+ EA    +   + G
Sbjct: 212 LIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYG 271

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D++  N ++   C+ G    A  LL  M R    P  VT+N L++  C++G + +A 
Sbjct: 272 CQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKAL 331

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L+ M + G  P+  SFNP       LIQG C  +  D A E L  MVS+G  PD  TY
Sbjct: 332 NVLEMMPKHGHTPNSRSFNP-------LIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTY 384

Query: 301 FSLIEGIA 308
             L+  + 
Sbjct: 385 NILLTALC 392



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 140/251 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+   ++ +C++G L +A  +LE M ++G  P + ++N LI G+CN+  
Sbjct: 302 MLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKG 361

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + MV +G  P   TYN+L+  L  + K+ +A  +L ++  KG  P  I+YN 
Sbjct: 362 IDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNT 421

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G A+ A  L +EM +KG++P ++T TS++  LS++ ++ EA + F      G
Sbjct: 422 VIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFG 481

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+  ++N+++ G C       A   L +M      P E +Y TL+ G   +G  EEA 
Sbjct: 482 IKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEAS 541

Query: 241 RLLDQMKRRGI 251
           +L +++  RG+
Sbjct: 542 KLSNELYSRGL 552



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 95/182 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD  TY   ++ +CK+G++++A  +L Q+   G  P+ ++YNT+IDG    G 
Sbjct: 372 MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGK 431

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E+A    +EM  +G+ P   T   ++  L  E K+ EA      +   GI P++  YN 
Sbjct: 432 AELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNS 491

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C+      A     +M+  G +PT  +YT+LI  ++ +    EA +L     ++G
Sbjct: 492 IMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRG 551

Query: 181 ML 182
           ++
Sbjct: 552 LV 553



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PD  T  S V G+ +EG++ EA +    +K  G+ P A  YN+++ G C    
Sbjct: 442 MCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQ 501

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A  F  +MV  G  PT ++Y  LI  +  E    EA  +  E+  +G+V  S+   +
Sbjct: 502 TSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVKKSLIVKV 561



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 31/177 (17%)

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L +   + E  +  E    KG +PD+V   ALI   C  G  + A  ++  ++      D
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-------------------- 259
             +YN L++  C+ G++EEA R+LD      + P+  +++                    
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHTS---VAPNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 260 --------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                   P  +T   LI   CK      A +L  EM  KG  PD  TY  LI+G  
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFC 252


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 163/307 (53%), Gaps = 10/307 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD +T+ S ++G C   R+EEA  M+ QM E G+ P  V Y T+ID  C  G+++ A
Sbjct: 136 GFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNA 195

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S  ++M   GI P    Y  L++ L    +  +AD +L+ M ++ I PD IT+N LI+ 
Sbjct: 196 LSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDA 255

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G    A  L++EMI   I P + TYTSLI  L  + R+ EA Q+F     KG  PD
Sbjct: 256 FVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPD 315

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + +LI+G C    +E A  +  EM +  +  + +TY TL+ G    GK   A+ +  
Sbjct: 316 VVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFG 375

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK---GITPDDNTYF 301
            M  RG+ P+       R TYN L+  LC N + + A  +  +M  +   G+ P+  TY 
Sbjct: 376 HMVSRGVPPN------IR-TYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYN 428

Query: 302 SLIEGIA 308
            L+ G+ 
Sbjct: 429 VLLHGLC 435



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 168/310 (54%), Gaps = 10/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G++PD   Y S V+G+C  GR  +A  +L  M +  + P  +T+N LID +  +G 
Sbjct: 202 MENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGK 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM++  I P   TY  LI+ L ME ++ EA  M   M  KG  PD + Y  
Sbjct: 262 LLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTS 321

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+C   + A  +  EM  KG+    +TYT+LI       +   A ++F + +++G
Sbjct: 322 LINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRG 381

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK---VHPDEVTYNTLMHGRCRQGKVE 237
           + P+I  +N L+   C NG + +A  + ++M + +   V P+  TYN L+HG C  GK+E
Sbjct: 382 VPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLE 441

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  +   M++R +       +   +TY  +IQG+CK  +   A  L   + SKG+ P+ 
Sbjct: 442 KALMVFGDMQKRDM-------DIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNV 494

Query: 298 NTYFSLIEGI 307
            TY ++I G+
Sbjct: 495 VTYTTMISGL 504



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 162/305 (53%), Gaps = 7/305 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ + K  + +    + + ++  G+     T N L++ +C      +A SF
Sbjct: 69  PSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSF 128

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P   T+  LI+   +  ++ EA  M+ +M E GI PD + Y  +I+  C+
Sbjct: 129 LGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCK 188

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+   A SL ++M + GI+P ++ YTSL+  L    R  +AD L    + + + PD++ 
Sbjct: 189 NGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVIT 248

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FNALID     G +  A  L  EM +M + P+  TY +L++G C +G+++EAR++   M+
Sbjct: 249 FNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLME 308

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G  PD ++       Y +LI G CK ++ + A ++  EM  KG+T +  TY +LI+G 
Sbjct: 309 TKGCFPDVVA-------YTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGF 361

Query: 308 ASVDK 312
             V K
Sbjct: 362 GLVGK 366



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 161/312 (51%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  D YT    ++  C+  +   AS  L ++ + G  P   T+ +LI+G+C    +E A
Sbjct: 101 GVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEA 160

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S  ++MV+ GI P    Y  +I  L     +  A  +  +M   GI PD + Y  L+NG
Sbjct: 161 MSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNG 220

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G  + A  L   M+ + I+P ++T+ +LI    K+ ++++A +L+   +   + P+
Sbjct: 221 LCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPN 280

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I  + +LI+G C  G ++ A  +   M+     PD V Y +L++G C+  KVE+A ++  
Sbjct: 281 IFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFY 340

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M ++G+  + I       TY  LIQG     + ++A+E+   MVS+G+ P+  TY  L+
Sbjct: 341 EMSQKGLTGNTI-------TYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLL 393

Query: 305 EGIA---SVDKA 313
             +     V+KA
Sbjct: 394 HCLCYNGKVNKA 405



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 7/292 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +  EA  +   M E+  +P+ + +  L++        ++  +    +   G+     T N
Sbjct: 51  QFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCN 110

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           LL++      +   A   L ++ + G  PD  T+  LING+C     ++A S+ ++M+  
Sbjct: 111 LLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEM 170

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           GI+P ++ YT++I  L K   +  A  LF      G+ PD+VM+ +L++G C +G    A
Sbjct: 171 GIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDA 230

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             LL+ M + K+ PD +T+N L+    ++GK+ +A+ L ++M +  I P+         T
Sbjct: 231 DLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPN-------IFT 283

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           Y +LI GLC     D A ++   M +KG  PD   Y SLI G     K  ++
Sbjct: 284 YTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDA 335



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 7/259 (2%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           KGN   A SF   +     +     Y  ++   L   +  EA D+   M E   +P  I 
Sbjct: 14  KGNSGKALSFSRLLGLSFWVRAFCNYREILRNGLHSLQFNEALDLFSHMVESRPLPSIID 73

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  L+N   +        +L   +   G+   + T   L+    + ++   A       +
Sbjct: 74  FTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLM 133

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G  PDI  F +LI+G C    IE A S++ +M  M + PD V Y T++   C+ G V+
Sbjct: 134 KLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVD 193

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  L +QM+  GI+PD +        Y +L+ GLC +     A+ LLR M+ + I PD 
Sbjct: 194 NALSLFNQMENYGIRPDVV-------MYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDV 246

Query: 298 NTYFSLIEGIASVDKAAES 316
            T+ +LI+      K  ++
Sbjct: 247 ITFNALIDAFVKEGKLLDA 265



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 118/214 (55%), Gaps = 3/214 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G  PD   Y S ++G CK  ++E+A ++  +M + GL    +TY TLI G+   G 
Sbjct: 307 METKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGK 366

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSIT 117
             +A      MV +G+ P   TYN+L+H L    K+ +A  + ++M ++   G+ P+  T
Sbjct: 367 PNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRT 426

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN+L++G C  G  +KA  +  +M  + +   ++TYT +I  + K  ++ +A  LF +  
Sbjct: 427 YNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLP 486

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           +KG+ P++V +  +I G    G +  A  L ++M
Sbjct: 487 SKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKM 520


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 160/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+ YTY   +   CK G+++E   ML  M E GLV + V +N LIDGYC +G 
Sbjct: 321 MVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGM 380

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    D M    + P + TYN LI     ++ M  A  +L +M E  + P+ +TYN 
Sbjct: 381 MEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNT 440

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+      A+ LH  MI  G  P   T+ + I  L K  ++ +A Q+FE+   K 
Sbjct: 441 LIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKH 500

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +  ++ ALIDG+C       A  L K M      P+ +T+N L+ G  ++GKVE+A 
Sbjct: 501 AEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAM 560

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D M +   K       PT  TY  LI+ + +  + D A   L +M+S G  P+  TY
Sbjct: 561 SLVDVMGKFDAK-------PTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTY 613

Query: 301 FSLIEGIASVDKAAES 316
            + I+      +  E+
Sbjct: 614 TAFIKAYCRQGRLLEA 629



 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 161/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV+P+  ++ + V+  CK G +  A      + + G    + TY +LI GYC    
Sbjct: 181 MLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHE 240

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A+   + M ++G +    +Y  LIH      K+ EA ++  +M E G  PD  TY +
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTV 300

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  +C  G   +A    +EM+  GI+P + TYT LI    K  +M E  ++    L KG
Sbjct: 301 LVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKG 360

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++  +V FNALIDG+C  G +E A  +L  M   KV P+  TYN L+ G CR+  ++ A 
Sbjct: 361 LVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAM 420

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M    + P+ +       TYN LI GLCK +  D A  L   M+  G  PD  T+
Sbjct: 421 ALLNKMYENKLSPNLV-------TYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTF 473

Query: 301 FSLIEGIASVDKAAES 316
            + I+ +  + K  ++
Sbjct: 474 CAFIDCLCKMGKVEQA 489



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   +  +Y + + G C+ G+++EA  +  QMKE+G  P   TY  L+  +C  G 
Sbjct: 251 MPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGK 310

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  F +EMV+ GI P   TY +LI       KM E  +ML  M EKG+V   + +N 
Sbjct: 311 ETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNA 370

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ G  + A  + D M    + P   TY  LI    ++  M  A  L        
Sbjct: 371 LIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENK 430

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N LI G C    ++ A+ L   M +    PD+ T+   +   C+ GKVE+A 
Sbjct: 431 LSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAH 490

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ + +K +  + +          Y ALI G CK ++   A  L + M+ +G  P+  T+
Sbjct: 491 QVFESLKEKHAEAN-------EFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITF 543

Query: 301 FSLIEGIASVDKAAES 316
             L++G+    K  ++
Sbjct: 544 NVLLDGLRKEGKVEDA 559



 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 160/368 (43%), Gaps = 60/368 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V P+S TY   + G C++  ++ A  +L +M EN L P  VTYNTLI G C    
Sbjct: 391 MKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARV 450

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+     M+K G +P   T+   I  L    K+ +A  + + + EK    +   Y  
Sbjct: 451 VDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTA 510

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE---NFL 177
           LI+GYC+      A  L   M+ +G  P  +T+  L+  L K+ ++ +A  L +    F 
Sbjct: 511 LIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFD 570

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           AK   P +  +  LI+      + +RA   L +M      P+ VTY   +   CRQG++ 
Sbjct: 571 AK---PTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLL 627

Query: 238 EARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALI 269
           EA  ++ ++K  GI  D   ++                            P+R TY+ L+
Sbjct: 628 EAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILL 687

Query: 270 QGLC---KNQEG-----------------------DLAEELLREMVSKGITPDDNTYFSL 303
           + L     N+EG                       ++   L  +MV +G  P+ NTY  L
Sbjct: 688 KHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKL 747

Query: 304 IEGIASVD 311
           I+G+  V+
Sbjct: 748 IKGLCKVE 755



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 26/278 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G QP+  TY +F+   C++GRL EA  M+ ++KE G++  +  Y+ L++ Y   G 
Sbjct: 601 MISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQ 660

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER------------KMVEADD------- 101
           L+ AF     M   G  P+  TY++L+  L+ E+              +  D+       
Sbjct: 661 LDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIA 720

Query: 102 -------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
                  + ++M E+G VP+  TY+ LI G C+  +   AF L + M   GI P+   + 
Sbjct: 721 DFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHN 780

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           SL+    K     EA +L ++ +    L  +  +  L+ G    GN E+A  + + +   
Sbjct: 781 SLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSC 840

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
             + DEV +  L+ G  R+G V+E  +L D M++ G +
Sbjct: 841 GYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTGCR 878



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 154/351 (43%), Gaps = 49/351 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+S T+   + G+ KEG++E+A  +++ M +    PT  TY  LI+    + +
Sbjct: 531 MLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESD 590

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F D+M+  G  P   TY   I     + +++EA++M+ ++ E+GI+ DS  Y++
Sbjct: 591 FDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDV 650

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+N Y   G    AF +   M   G +P+  TY+ L+              +FE +  +G
Sbjct: 651 LVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILL-----------KHLIFEKYNKEG 699

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFS------LLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           M  D+   N  +D    N NI +         L ++M      P+  TY+ L+ G C+  
Sbjct: 700 MGLDLNSTNISVD----NANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVE 755

Query: 235 KVEEARRLLDQMKRRGIKPDHISFN--------------PTRL--------------TYN 266
            +  A RL + MK  GI P     N                RL              +Y 
Sbjct: 756 HLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYK 815

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L+ GL +    + AEE+ R ++S G   D+  +  L++G+       E S
Sbjct: 816 LLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECS 866



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 24/286 (8%)

Query: 38  ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY--NLLIHE------ 89
           ++G + T  +Y  L+      G L  A + R+ M+K  +    + +  NLL H       
Sbjct: 96  QHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFVLNLLTHHEFSLSV 155

Query: 90  -------LLMER--KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
                  +++ R   + E + + K+M   G+ P+ I++N ++N +C+ GN   A +    
Sbjct: 156 TSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCG 215

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           ++  G      TYTSLI    K + + +A ++FE    +G L + V +  LI G C  G 
Sbjct: 216 LMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGK 275

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           I+ A  L  +M      PD  TY  L+   C  GK  EA +  ++M   GI+P+      
Sbjct: 276 IDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPN------ 329

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              TY  LI   CK  + D   E+L  M+ KG+      + +LI+G
Sbjct: 330 -VYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDG 374



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY   + G+CK   L  A R+   MKE+G+ P+   +N+L+   C  G 
Sbjct: 732 MVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGM 791

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    D M++   +    +Y LL+  L  +    +A+++ + +   G   D + + +
Sbjct: 792 HEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKV 851

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
           L++G  R G   +   L D M   G +    T+T L
Sbjct: 852 LLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTML 887



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 35/125 (28%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN--------------GLVPTA- 45
           MK  G+ P    + S +S  CK G  EEA R+L+ M E               GL     
Sbjct: 767 MKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGN 826

Query: 46  --------------------VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                               V +  L+DG   KG ++     RD M K G    + T+ +
Sbjct: 827 QEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTM 886

Query: 86  LIHEL 90
           L  EL
Sbjct: 887 LSQEL 891


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 169/326 (51%), Gaps = 30/326 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P S T+   ++G+CK+G +   +++++ M   G VP  VTYNT+I+G C KG 
Sbjct: 249 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  D MV    +P   TY  LI+ L+ + + V+   +L  + E+G   +   Y+ 
Sbjct: 309 LDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYST 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  +   +++A  L  +M+ KG QP ++ Y++LI  L ++ ++ EA ++    + KG
Sbjct: 369 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 428

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +++LI G    GN ++A  + KEM +    P+E+ Y+ L+HG C  GK+ EA 
Sbjct: 429 CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAM 488

Query: 241 RLLDQMKRRGIKPDHISFN------------------------------PTRLTYNALIQ 270
            +   M  RG++PD ++++                              P  +TYN L++
Sbjct: 489 MMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLR 548

Query: 271 GLCKNQEGDLAEELLREMVSKGITPD 296
            LCK      A +LL  M+ +G  PD
Sbjct: 549 ALCKQNSISHAIDLLNSMLDRGCNPD 574



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+  ++   +  MCK G ++ A  +  +M      P   TY TL+DG C +  ++ A 
Sbjct: 184 ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAV 243

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM  +G  P++ T+N+LI+ L  +  MV    ++  M  KG VP+ +TYN +ING 
Sbjct: 244 LLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGL 303

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   KA SL D M+     P  +TY +LI  L KQ R ++   L  +   +G   + 
Sbjct: 304 CLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANE 363

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             ++ LI G       E A  L K+M      P+ V Y+ L+ G CR+GK++EA+ +L +
Sbjct: 364 YAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCE 423

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G  P+         TY++LI+G  K      A  + +EM      P++  Y  LI 
Sbjct: 424 MVNKGCTPNA-------FTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIH 476

Query: 306 GIASVDKAAES 316
           G+    K  E+
Sbjct: 477 GLCEDGKLREA 487



 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 150/286 (52%), Gaps = 8/286 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  TYG+ ++G+ K+GR  +   +L  ++E G       Y+TLI G   +   E A   
Sbjct: 326 PNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGL 385

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +MV++G  P    Y+ LI  L  E K+ EA ++L EM  KG  P++ TY+ LI G+ +
Sbjct: 386 WKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFK 445

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN++KA  +  EM      P  + Y+ LI  L +  ++ EA  ++ + L +G+ PD+V 
Sbjct: 446 TGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVA 505

Query: 188 FNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           ++++I G C  G++E    L  EM        PD VTYN L+   C+Q  +  A  LL+ 
Sbjct: 506 YSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNS 565

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           M  RG  PD I+ N   +  NAL + L   Q+G    E L E+V +
Sbjct: 566 MLDRGCNPDLITCN---IFLNALREKLNPPQDG---REFLDELVVR 605



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 9/298 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLE--QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           ++ S ++ + +EG    A    E     +  + P  +++N +I   C  G ++ A     
Sbjct: 153 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 212

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM  Q   P   TY  L+  L  E ++ EA  +L EM  +G  P S+T+N+LING C+ G
Sbjct: 213 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           +  +   L D M  KG  P  +TY ++I  L  + ++ +A  L +  +A   +P+ V + 
Sbjct: 273 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 332

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI+G    G       LL  ++    H +E  Y+TL+ G  ++ K EEA  L  +M  +
Sbjct: 333 TLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEK 392

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           G +P+ +        Y+ALI GLC+  + D A+E+L EMV+KG TP+  TY SLI+G 
Sbjct: 393 GCQPNIV-------VYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGF 443



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 16/122 (13%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM-AF 65
           QPD  TY   +  +CK+  +  A  +L  M + G  P  +T N  ++    K N      
Sbjct: 537 QPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGR 596

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F DE+V +            +H+    +++V A  +++ M +K + P++ T+  +I   
Sbjct: 597 EFLDELVVR------------LHK---RQRIVGAAKIIEVMLQKFLPPNASTWERIIPEL 641

Query: 126 CR 127
           C+
Sbjct: 642 CK 643


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 44  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLR 103

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 104 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 163

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 164 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 223

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G + +A
Sbjct: 224 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQA 283

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 284 HGLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVA 336

Query: 300 YFSLIEGIASVDKAAES 316
           Y ++I G+    +  ++
Sbjct: 337 YTAIISGLCQEGRPVDA 353



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 164/302 (54%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 119 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 178

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 179 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 238

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 239 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPD 298

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  ++ G C++G+  +A ++L 
Sbjct: 299 KFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLR 358

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 359 EMLSVGLKPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLM 411

Query: 305 EG 306
            G
Sbjct: 412 NG 413



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 135/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 185 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 244

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A  ++ EM  KG+ PD  TY  
Sbjct: 245 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTT 304

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT++I  L ++ R ++A+++    L+ G
Sbjct: 305 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVG 364

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P   TYN LM+G
Sbjct: 365 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 179

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 180 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 214


>gi|449449679|ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Cucumis sativus]
 gi|449516715|ref|XP_004165392.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Cucumis sativus]
          Length = 594

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 161/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY   +  +CK+G LE A  +L  M  +G  P  +TYN +I    + G 
Sbjct: 198 MVMSGGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHMFDNGC 257

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  E +++G  P   TY +LI  +   R  V A ++L+EM  +G  PD +TYN 
Sbjct: 258 FDQAVEFWKEQLRKGTPPYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNS 317

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C+ G  + A  + D ++  G+ P  +TY +L+  LS++    E D++ +      
Sbjct: 318 LINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILKIMSISL 377

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V  N LI+G C NG ++ A + L +M      PD +TYNTL+   C++G V+EA 
Sbjct: 378 QPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEAF 437

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL  +      P  IS       YN ++ GL +    D A  L  +M+  GI PDD T+
Sbjct: 438 QLLHLLTDTACSPGLIS-------YNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDTTH 490

Query: 301 FSLIEGIASVDKAAES 316
            S+I G    +K  E+
Sbjct: 491 RSIIWGFCRSNKFVEA 506



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 151/306 (49%), Gaps = 7/306 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  P   TY   +  + K      A  +LE+M   G  P  VTYN+LI+  C +G  E 
Sbjct: 271 KGTPPYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCKQGKFED 330

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    D ++  G++P A TYN L+H L       E D++LK M      P  +T N+LIN
Sbjct: 331 AALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILKIMSISLQPPTVVTCNVLIN 390

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G    A +  ++M      P ++TY +L+  L K+  + EA QL          P
Sbjct: 391 GLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEAFQLLHLLTDTACSP 450

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            ++ +N ++DG    G +++A SL  +M    + PD+ T+ +++ G CR  K  EA   L
Sbjct: 451 GLISYNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDTTHRSIIWGFCRSNKFVEAVETL 510

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             + + G + +  SF      Y  L+  LC N++ DLA ++L  M+S     ++  Y ++
Sbjct: 511 KGILKGGYEVNS-SF------YRILVHELCLNKKVDLAIQVLEMMLSSPCKSNETIYSTI 563

Query: 304 IEGIAS 309
           I  IAS
Sbjct: 564 INSIAS 569



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 151/313 (48%), Gaps = 10/313 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V  D  T    +   C +G+L EASR+++ M     +P       +I G+ N   ++ A 
Sbjct: 133 VGNDEETNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIRGFVNTDRMDKAV 192

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                MV  G +P   TYN++I  L  +  +  A ++L +M   G  PD ITYN +I   
Sbjct: 193 QVLKIMVMSGGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHM 252

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
              G   +A     E + KG  P ++TYT LI ++ K    + A ++ E    +G  PD+
Sbjct: 253 FDNGCFDQAVEFWKEQLRKGTPPYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDL 312

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N+LI+  C  G  E A  ++  +    + PD VTYNTL+H   R+G  +E   +L  
Sbjct: 313 VTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILKI 372

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M    ++P      PT +T N LI GLCKN   D A   L +M S    PD  TY +L+ 
Sbjct: 373 MS-ISLQP------PTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLG 425

Query: 306 GIAS---VDKAAE 315
            +     VD+A +
Sbjct: 426 ALCKEGMVDEAFQ 438



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 38/292 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTL--------- 51
           M + G  PD  TY S ++  CK+G+ E+A+ +++ +  +G+VP AVTYNTL         
Sbjct: 303 MANEGCYPDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGH 362

Query: 52  --------------------------IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                     I+G C  G L+ A +F ++M     +P   TYN 
Sbjct: 363 WDEVDEILKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNT 422

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+  L  E  + EA  +L  + +    P  I+YN +++G  R G   KA SL+ +M+  G
Sbjct: 423 LLGALCKEGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAMSLYSQMMENG 482

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P   T+ S+I+   + N+ +EA +  +  L  G   +   +  L+   C N  ++ A 
Sbjct: 483 IIPDDTTHRSIIWGFCRSNKFVEAVETLKGILKGGYEVNSSFYRILVHELCLNKKVDLAI 542

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQG---KVEEARRLLDQMKRRGIKPD 254
            +L+ M       +E  Y+T+++     G   + +E R+ L + K  G + D
Sbjct: 543 QVLEMMLSSPCKSNETIYSTIINSIASAGLKEQADELRQKLIEWKVLGKQED 594



 Score = 45.8 bits (107), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 31/136 (22%)

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFN---------- 259
           +D   V  DE T N ++   C +GK+ EA R++D M  R   PD     N          
Sbjct: 128 LDGPFVGNDEETNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIRGFVNTDR 187

Query: 260 -----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
                            P  +TYN +I  LCK    + A ELL +M   G  PD  TY +
Sbjct: 188 MDKAVQVLKIMVMSGGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNA 247

Query: 303 LIEGI---ASVDKAAE 315
           +I  +      D+A E
Sbjct: 248 VIRHMFDNGCFDQAVE 263


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 169/326 (51%), Gaps = 30/326 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P S T+   ++G+CK+G +   +++++ M   G VP  VTYNT+I+G C KG 
Sbjct: 233 MQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK 292

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  D MV    +P   TY  LI+ L+ + + V+   +L  + E+G   +   Y+ 
Sbjct: 293 LDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYST 352

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  +   +++A  L  +M+ KG QP ++ Y++LI  L ++ ++ EA ++    + KG
Sbjct: 353 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 412

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +++LI G    GN ++A  + KEM +    P+E+ Y+ L+HG C  GK+ EA 
Sbjct: 413 CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAM 472

Query: 241 RLLDQMKRRGIKPDHISFN------------------------------PTRLTYNALIQ 270
            +   M  RG++PD ++++                              P  +TYN L++
Sbjct: 473 MMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLR 532

Query: 271 GLCKNQEGDLAEELLREMVSKGITPD 296
            LCK      A +LL  M+ +G  PD
Sbjct: 533 ALCKQNSISHAIDLLNSMLDRGCNPD 558



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+  ++   +  MCK G ++ A  +  +M      P   TY TL+DG C +  ++ A 
Sbjct: 168 ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAV 227

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM  +G  P++ T+N+LI+ L  +  MV    ++  M  KG VP+ +TYN +ING 
Sbjct: 228 LLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGL 287

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   KA SL D M+     P  +TY +LI  L KQ R ++   L  +   +G   + 
Sbjct: 288 CLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANE 347

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             ++ LI G       E A  L K+M      P+ V Y+ L+ G CR+GK++EA+ +L +
Sbjct: 348 YAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCE 407

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G  P+         TY++LI+G  K      A  + +EM      P++  Y  LI 
Sbjct: 408 MVNKGCTPNA-------FTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIH 460

Query: 306 GIASVDKAAES 316
           G+    K  E+
Sbjct: 461 GLCEDGKLREA 471



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 8/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +    P+  TYG+ ++G+ K+GR  +   +L  ++E G       Y+TLI G   +  
Sbjct: 303 MVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEK 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     +MV++G  P    Y+ LI  L  E K+ EA ++L EM  KG  P++ TY+ 
Sbjct: 363 SEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSS 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+ + GN++KA  +  EM      P  + Y+ LI  L +  ++ EA  ++ + L +G
Sbjct: 423 LIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 482

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           + PD+V ++++I G C  G++E    L  EM        PD VTYN L+   C+Q  +  
Sbjct: 483 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 542

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           A  LL+ M  RG  PD I+ N   +  NAL + L   Q+G    E L E+V +
Sbjct: 543 AIDLLNSMLDRGCNPDLITCN---IFLNALREKLNPPQDG---REFLDELVVR 589



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 9/298 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLE--QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           ++ S ++ + +EG    A    E     +  + P  +++N +I   C  G ++ A     
Sbjct: 137 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 196

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM  Q   P   TY  L+  L  E ++ EA  +L EM  +G  P S+T+N+LING C+ G
Sbjct: 197 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           +  +   L D M  KG  P  +TY ++I  L  + ++ +A  L +  +A   +P+ V + 
Sbjct: 257 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 316

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI+G    G       LL  ++    H +E  Y+TL+ G  ++ K EEA  L  +M  +
Sbjct: 317 TLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEK 376

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           G +P+ +        Y+ALI GLC+  + D A+E+L EMV+KG TP+  TY SLI+G 
Sbjct: 377 GCQPNIV-------VYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGF 427



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + +P  L++N +I+ +CK    D A E+ REM  +   PD  TY +L++G+   D+  E+
Sbjct: 167 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 226



 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 16/122 (13%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM-AF 65
           QPD  TY   +  +CK+  +  A  +L  M + G  P  +T N  ++    K N      
Sbjct: 521 QPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGR 580

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F DE+V +            +H+    +++V A  +++ M +K + P++ T+  +I   
Sbjct: 581 EFLDELVVR------------LHK---RQRIVGAAKIIEVMLQKFLPPNASTWERIIPEL 625

Query: 126 CR 127
           C+
Sbjct: 626 CK 627


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 175/311 (56%), Gaps = 9/311 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNKGNLEMAF 65
           P+ +++   + G+C E R +EA  +L  M ++G   +P  V+Y+T+IDG    G+ + A+
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY 218

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +   EM+ + I+P    Y+ +I  L   + M +A ++   M + G+ P+  TY  L++G+
Sbjct: 219 ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   +A    ++M   G++P ++TY+S +  L K  R  EA ++F++ + +G+ PDI
Sbjct: 279 CSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDI 338

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +++L+ G+   G +     L   M +  + PD   +NTL++   +QGKV+EA  +  +
Sbjct: 339 TTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSK 398

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M+++G+KP+ +       TY+ LI G CK    + A  L +EMVS G++P+  TY  +++
Sbjct: 399 MRQQGLKPNCV-------TYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQ 451

Query: 306 GIASVDKAAES 316
           G+    + A +
Sbjct: 452 GLFRTGRTATA 462



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 148/288 (51%), Gaps = 7/288 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+  +Y + + G+ K G  ++A     +M +  ++P  V Y+++I   C    ++ A
Sbjct: 193 GCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKA 252

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MVK G+ P   TY  L+H      ++ EA   L++M   G+ P+ +TY+  ++ 
Sbjct: 253 MEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDY 312

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +A  + D M+ +G++P + TY+SL+   + +  ++E   LF+  +   M PD
Sbjct: 313 LCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPD 372

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             +FN LI      G ++ A  +  +M +  + P+ VTY+TL++G C+  ++E A  L  
Sbjct: 373 HYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQ 432

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +M   G+ P+ I       TYN ++QGL +      A+E   +++  G
Sbjct: 433 EMVSNGVSPNFI-------TYNIMLQGLFRTGRTATAKEFYVQIIKSG 473



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 133/252 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P+   Y S ++ +CK   +++A  + ++M +NG+ P   TY +L+ G+C+ G 
Sbjct: 224 MLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQ 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A  F ++M   G+ P   TY+  +  L    +  EA  +   M ++G+ PD  TY+ 
Sbjct: 284 LTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSS 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY   G   +   L D M+   +QP    + +LI+  +KQ ++ EA  +F     +G
Sbjct: 344 LLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V ++ LI+G+C    +E A +L +EM    V P+ +TYN ++ G  R G+   A+
Sbjct: 404 LKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAK 463

Query: 241 RLLDQMKRRGIK 252
               Q+ + G K
Sbjct: 464 EFYVQIIKSGKK 475



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 162/339 (47%), Gaps = 33/339 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
           V P  +TYG  +   C  GRL+     L  + + G     + +N L+ G C   + +  M
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK--GIVPDSITYNIL 121
               R  M +   +P   ++ +++  L  E +  EA ++L  M +   G +P+ ++Y+ +
Sbjct: 146 DIVLRG-MTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTV 204

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G  + G+  KA++ + EM+ + I P ++ Y+S+I  L K   M +A ++ +  +  G+
Sbjct: 205 IDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P+   + +L+ G C++G +  A   L++M    V P+ VTY++ M   C+ G+  EAR+
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARK 324

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           + D M +RG+KPD  +++                            P    +N LI    
Sbjct: 325 IFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASA 384

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           K  + D A  +  +M  +G+ P+  TY +LI G   + +
Sbjct: 385 KQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITR 423



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 128/277 (46%), Gaps = 41/277 (14%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           + PT  TY  LI   C+ G L++ F+    +VK+G       +N L+  L  +++  +A 
Sbjct: 86  VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAM 145

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
           D +L+ M E   VP+  ++ I++ G C    +++A  L   M   G              
Sbjct: 146 DIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDG-------------- 191

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
                               G LP++V ++ +IDG    G+ ++A++  +EM   ++ P+
Sbjct: 192 -------------------GGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPN 232

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            V Y++++   C+   +++A  + D+M + G+ P+         TY +L+ G C + +  
Sbjct: 233 VVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNC-------FTYTSLVHGFCSSGQLT 285

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A + L +M S G+ P+  TY S ++ +    +  E+
Sbjct: 286 EAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEA 322



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 12/263 (4%)

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER--KMVEADDMLKEMGEKGIVPDSI 116
           G  E A    DE++++GI     + N  + ++  +     V   + +   G   + P   
Sbjct: 32  GGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVH 91

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA-DQLFEN 175
           TY ILI   C  G     F+    ++ KG +   + +  L+  L    R  +A D +   
Sbjct: 92  TYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRG 151

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQ 233
                 +P++     ++ G C     + A  LL  M  D     P+ V+Y+T++ G  + 
Sbjct: 152 MTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKG 211

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G  ++A     +M  R I P+ +        Y+++I  LCK Q  D A E+   MV  G+
Sbjct: 212 GDPDKAYATYREMLDRRILPNVV-------IYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 294 TPDDNTYFSLIEGIASVDKAAES 316
           TP+  TY SL+ G  S  +  E+
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEA 287


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 162/342 (47%), Gaps = 28/342 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P ++T    +  +C  G  E+A R+   MK  G  P   TY  LI G C  G L++A
Sbjct: 315 GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVA 374

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M + G+ P   TYN LI+ L+  R++  A  +L  MG  G  P+ +TYN +I G
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G+ KKA  + + M+ +G    ++TY ++I           A ++ +     G  PD
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LI G C    +E AF L  EM    + P+EVTY  L+ G C+  K++ A  LL+
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            MKR G +P+  ++N                            P  +TY A+I GLCKN 
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              LA E+  +M+ +G  P+  TY SLI  +    K  E+ N
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 656



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  TY   + G C  G  ++A  ++  M + G     VTYNT+I GYC+ GN
Sbjct: 416 MGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M   G  P   +Y  LI       KM  A  +  EM + G+ P+ +TY  
Sbjct: 476 TTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTA 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+      A SL + M   G +P + TY  LI  L+KQN    A++L +  + +G
Sbjct: 536 LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V + A+IDG C NG+   A  +  +M      P+ +TY++L+    ++GKVEEA 
Sbjct: 596 IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE 655

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++R G+ PD I       TY  +I+    + + + A   L  M+  G  P   TY
Sbjct: 656 NLFAELERHGLIPDEI-------TYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTY 708

Query: 301 FSLIEGI 307
             LI+G+
Sbjct: 709 GVLIKGL 715



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 172/340 (50%), Gaps = 28/340 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GVQP+   Y + ++ +CK+G + +A  +++++ E+ + P   TY ++I G+C K +
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M K+G  P   TY+ LI+ L    ++ EA D+++EM   GI+P + T   
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C  G  + A+ L  +M +KG +P + TYT+LI  L     +  A  LF      G
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 385

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +NALI+    N  I+ AF +L  M R    P+ VTYN ++ G C  G  ++A 
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +++ M +RG   + +++N                            P   +Y  LI G 
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           CK  + + A  L  EMV  G+ P++ TY +LI+G    +K
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 66/375 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +PD ++Y   + G CK  ++E A  +  +M ++GL P  VTY  LIDGYC    
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M + G  P   TYN+LIH L  +     A+++ K M E+GI P+ +TY  
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 605

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G+   A  + ++MI +G  P +LTY+SLI  L ++ ++ EA+ LF      G
Sbjct: 606 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 665

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM---------------------------DR 213
           ++PD + +  +I+ +  +G +E AF+ L  M                            R
Sbjct: 666 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR 725

Query: 214 MKVHPDEV--------------------------------TYNTLMHGRCRQGKVEEARR 241
           +   PD V                                  N L+      G+  EA  
Sbjct: 726 LAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANE 785

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL  M  +G+ PD  +       YN+L+  L + +  DLA  + + M ++G     N Y 
Sbjct: 786 LLGSMISQGLCPDQEA-------YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYK 838

Query: 302 SLIEGIASVDKAAES 316
            LI  +  + +  E+
Sbjct: 839 ELICALCQLHRRKEA 853



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 146/339 (43%), Gaps = 47/339 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +P+  TY   + G+ K+     A  + + M E G+ P  VTY  +IDG C  G+
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A    ++M++QG +P   TY+ LI  L  E K+ EA+++  E+   G++PD ITY  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  Y   G  + AF+    MI  G QPT+ TY  LI  L  +N  + ADQ         
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRL------A 727

Query: 181 MLPDIV--------------------------------MFNALIDGHCTNGNIERAFSLL 208
            LPD+V                                + NAL+    T G    A  LL
Sbjct: 728 ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
             M    + PD+  YN+L+    R   V+ A  +   M  +G +   +  N     Y  L
Sbjct: 788 GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCE---VHLN----GYKEL 840

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           I  LC+      A      M+ +   PDD     LI+G+
Sbjct: 841 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGL 879



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 7/274 (2%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           L+ + ++GL      Y+ L+      G           M+ +G+ P    YN +I+ L  
Sbjct: 168 LDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCK 227

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +  + +A+ ++K++ E  + PD+ TY  +I G+CR  +   A  + ++M  +G +P  +T
Sbjct: 228 DGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVT 287

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y++LI  L    R+ EA  L    +  G+LP        I   C  G  E A+ L  +M 
Sbjct: 288 YSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMK 347

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
                P+  TY  L+ G C  G ++ A  L  +M R G+ P+ +       TYNALI  L
Sbjct: 348 NKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV-------TYNALINIL 400

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +N+    A  +L  M   G +P+  TY  +I+G
Sbjct: 401 VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 7/254 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           LI    +K  +    SF D + + G+      Y+ L+  L          D    M  +G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           + P+ + YN +IN  C+ GN   A ++  ++    + P   TYTS+I    +++ +  A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           Q+F     +G  P+ V ++ LI+G C +G +  AF L++EM    + P   T    +   
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C  G  E+A RL   MK +G +P+         TY ALI GLC +    +A  L   M  
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPN-------VYTYTALISGLCVSGLLKVAIGLFHRMSR 383

Query: 291 KGITPDDNTYFSLI 304
            G+ P+  TY +LI
Sbjct: 384 DGVFPNTVTYNALI 397



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 20/301 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+  TY S +  + +EG++EEA  +  +++ +GL+P  +TY  +I+ Y   G 
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD-SITYN 119
           +E AF+F   M+K G  PT  TY +LI  L  + + + AD  L  + +  +VP+ S  Y 
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRLAALPD--VVPNCSFGYQ 741

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
                     +AK A       +  G+  ++    +L+  LS   R  EA++L  + +++
Sbjct: 742 TTDQDAVSVMSAKLA------ELDPGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQ 793

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD   +N+L+       N++ A  + K M           Y  L+   C+  + +EA
Sbjct: 794 GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEA 853

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R   + M  R       ++NP  +    LI GL ++   DL  E L  M ++   P  + 
Sbjct: 854 RITFENMLMR-------TWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 906

Query: 300 Y 300
           Y
Sbjct: 907 Y 907



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 99/250 (39%), Gaps = 24/250 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK-- 58
           ++  G+ PD  TY   +      G++E A   L +M + G  PT  TY  LI G  N+  
Sbjct: 661 LERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYL 720

Query: 59  -GNLEMA--------FSFRDEMVKQGIMPTAS-------------TYNLLIHELLMERKM 96
             +  +A         SF  +   Q  +   S               N L+  L    + 
Sbjct: 721 LADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRW 780

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
            EA+++L  M  +G+ PD   YN L+    R  N   A  +   M  +G +  +  Y  L
Sbjct: 781 FEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKEL 840

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I  L + +R  EA   FEN L +   PD V+   LIDG   +G  +     L  M+  + 
Sbjct: 841 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRY 900

Query: 217 HPDEVTYNTL 226
            P    Y  L
Sbjct: 901 MPSFHIYTIL 910



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           V P+ + YN +++  C+ G V +A  ++ ++    + PD         TY ++I G C+ 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPD-------TFTYTSMILGHCRK 263

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + D A ++  +M  +G  P+  TY +LI G+    +  E+
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 304



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 59/149 (39%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + VS +   GR  EA+ +L  M   GL P    YN+L+       N+++A      M  Q
Sbjct: 769 ALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQ 828

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
           G     + Y  LI  L    +  EA    + M  +   PD +   +LI+G  R G     
Sbjct: 829 GCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLC 888

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
                 M  +   P+   YT L    SK+
Sbjct: 889 MEFLHIMETRRYMPSFHIYTILAREASKK 917


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  +  T+ +FV   CKEG + EA ++  QM+  G+     TY  LIDG C  G 
Sbjct: 284 MKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    DEMV+QG+     TY +L+  L  ERK+ EA+D+L+ M + G+  + + Y  
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+    N++KA  L  EM +KG++  +  Y +LI  L   +++ EA  L       G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ +++  ++D    +G +  A ++L+++      P+ +TY  L+ G C+ G ++EA 
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              ++M+  G+       +P    Y AL+ GLCKN   + A +L  EMV KG++ D   Y
Sbjct: 524 SHFNKMRDLGL-------DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVY 576

Query: 301 FSLIEG 306
            +L++G
Sbjct: 577 TALLDG 582



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 164/335 (48%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  PD  T+ S + G  K G L+E  +++E+M+ +G     VTYN LI+ +C  G 
Sbjct: 214 MKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGR 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+ +   M ++G+M    T++  +     E  + EA  +  +M  +G+  +  TY  
Sbjct: 274 METAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTC 333

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L DEM+ +G+   ++TYT L+  L K+ ++ EA+ +       G
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + +++  LI GH  N N E+A  LL EM    +  D   Y  L+ G C   K++EA+
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAK 453

Query: 241 RLLDQMKRRGIKPDHI----------------------------SFNPTRLTYNALIQGL 272
            LL +M   G++P++I                             F P  +TY ALI GL
Sbjct: 454 SLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGL 513

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK    D A     +M   G+ P+   Y +L++G+
Sbjct: 514 CKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGL 548



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 144/304 (47%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV  +  TY   V G+CKE ++ EA  +L  M++ G+    + Y TLI G+    N
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKN 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EM  +G+    S Y  LI  L    K+ EA  +L +M E G+ P+ I Y  
Sbjct: 414 SEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++   + G   +A ++  +++  G QP ++TY +LI  L K   + EA   F      G
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLG 533

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  + AL+DG C NG +  A  L  EM    +  D+V Y  L+ G  +QG + +A 
Sbjct: 534 LDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 593

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G++ D          Y   I G C       A E+  EM+  GI PD   Y
Sbjct: 594 ALKAKMIDSGLQLD-------LFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVY 646

Query: 301 FSLI 304
             LI
Sbjct: 647 NCLI 650



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 13/297 (4%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           + GRL    R+ EQ+      P   T+N +ID  C +G L  A S    M + G +P   
Sbjct: 171 RSGRL--VRRLFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVV 224

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           T+N LI       ++ E + +++EM   G   D +TYN LIN +C+ G  + A+     M
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM 284

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             +G+   ++T+++ +    K+  + EA +LF     +GM  +   +  LIDG C  G +
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  LL EM R  V  + VTY  L+ G C++ KV EA  +L  M++ G++ +       
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE------ 398

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L Y  LI G   N+  + A  LL EM +KG+  D + Y +LI+G+ +V K  E+ +
Sbjct: 399 -LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 112/214 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+   Y + +    K G++ EA  ML+++ ++G  P  +TY  LIDG C  G+
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  ++M   G+ P    Y  L+  L     + EA  +  EM  KG+  D + Y  
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY + GN   AF+L  +MI  G+Q  +  YT  I      N M EA ++F   +  G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           + PD  ++N LI  +   GN+E A SL  EM+R+
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV 672



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 123/248 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G++ D   YG+ + G+C   +L+EA  +L +M E+GL P  + Y T++D     G 
Sbjct: 424 MKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +++  G  P   TY  LI  L     + EA     +M + G+ P+   Y  
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G   +A  L +EM+HKG+    + YT+L+    KQ  + +A  L    +  G
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 603

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+  +   I G C    +  A  +  EM    + PD   YN L+    + G +EEA 
Sbjct: 604 LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663

Query: 241 RLLDQMKR 248
            L D+M+R
Sbjct: 664 SLQDEMER 671


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 164/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  +  TY   +    K G++ +A ++ ++M+E G+      Y +LI   C KGN
Sbjct: 285 MKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGN 344

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   DE+ ++G+ P++ TY  LI  +    +M  A+ ++ EM  KG+    + +N 
Sbjct: 345 MKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNT 404

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR G   +A  ++D M  KG Q  + T  ++    ++  R  EA Q     +  G
Sbjct: 405 LIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGG 464

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +    V +  LID +C  GN+E A  L  EM    V P+ +TYN +++  C+QGK++EAR
Sbjct: 465 VKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEAR 524

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   M+  G+ PD         TY +LI G C     D A  L  EM  KG+  +  TY
Sbjct: 525 KLRANMEANGMDPDS-------YTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTY 577

Query: 301 FSLIEGIASVDKAAES 316
             +I G++   K+ E+
Sbjct: 578 TVMISGLSKAGKSDEA 593



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 167/351 (47%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+   Y+    V G+C+ G +E++ +++++    G+ P A TYNT+I+ Y  + +
Sbjct: 215 MVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRD 274

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                     M K G++    TY LL+   +   KM +A+ +  EM E+GI  D   Y  
Sbjct: 275 FSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTS 334

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  CR GN K+AF L DE+  KG+ P+  TY +LI  + K   M  A+ L     +KG
Sbjct: 335 LISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKG 394

Query: 181 MLPDIVMFNALIDGHCTNGNIERA-------------------------FSLLKEMDRMK 215
           +    V+FN LIDG+C  G ++ A                         F+ LK  D  K
Sbjct: 395 VNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAK 454

Query: 216 ----------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                     V    V+Y  L+   C++G VEEA+RL  +M  +G++P+ I       TY
Sbjct: 455 QWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAI-------TY 507

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           N +I   CK  +   A +L   M + G+ PD  TY SLI G    D   E+
Sbjct: 508 NVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEA 558



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 139/255 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +G+ P SYTYG+ + G+CK G +  A  ++ +M+  G+  T V +NTLIDGYC KG 
Sbjct: 355 LTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGM 414

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M ++G      T N +       ++  EA   L  M E G+   +++Y  
Sbjct: 415 VDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTN 474

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ GN ++A  L  EM  KG+QP  +TY  +I+   KQ ++ EA +L  N  A G
Sbjct: 475 LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANG 534

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PD   + +LI G C   N++ A  L  EM    +  + VTY  ++ G  + GK +EA 
Sbjct: 535 MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF 594

Query: 241 RLLDQMKRRGIKPDH 255
            L D+MKR+G   D+
Sbjct: 595 GLYDEMKRKGYTIDN 609



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 102/192 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G Q D +T  +  S   +  R +EA + L +M E G+  + V+Y  LID YC +GN
Sbjct: 425 MEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGN 484

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM  +G+ P A TYN++I+    + K+ EA  +   M   G+ PDS TY  
Sbjct: 485 VEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTS 544

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C   N  +A  L  EM  KG+    +TYT +I  LSK  +  EA  L++    KG
Sbjct: 545 LIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKG 604

Query: 181 MLPDIVMFNALI 192
              D  ++ ALI
Sbjct: 605 YTIDNKVYTALI 616



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 10/263 (3%)

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           Y + G  E      D MVK+G+     +  + +      R++    ++ + M + G+   
Sbjct: 164 YVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKIT 223

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             +  I++ G CR G  +K+  L  E   KGI+P   TY ++I    KQ      + + +
Sbjct: 224 VYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLK 283

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
                G++ + V +  L++    NG +  A  L  EM    +  D   Y +L+   CR+G
Sbjct: 284 VMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKG 343

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            ++ A  L D++  +G+       +P+  TY ALI G+CK  E   AE L+ EM SKG+ 
Sbjct: 344 NMKRAFLLFDELTEKGL-------SPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVN 396

Query: 295 PDDNTYFSLIEGIAS---VDKAA 314
                + +LI+G      VD+A+
Sbjct: 397 ITQVVFNTLIDGYCRKGMVDEAS 419


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 159/294 (54%), Gaps = 7/294 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD +TY   V G+CK G++   +++L +    G+    +TYN LI+GYC  G+++ A  
Sbjct: 263 SPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALD 322

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               M +  + P   T+N +IH      K+ +A   L +M   G+ P+++T+N LI+G C
Sbjct: 323 VLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQC 382

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G  K A  L D M   G+ P   TY   I  L  + ++ EA  LF     KG+    V
Sbjct: 383 SVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNV 442

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           ++ +L+ G+C  G+I+ AF L+++M      PD  TYNTL+ G C+  +++ A  LLD+M
Sbjct: 443 IYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKM 502

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           K++GI+       PT  T+N LI+ +  +++   A ++  +M+S G  PD  TY
Sbjct: 503 KKQGIE-------PTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTY 549



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 155/311 (49%), Gaps = 8/311 (2%)

Query: 3   SRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           SRG  +P  +TY   + G+CK  R+ EA  +L +M   G+VP  VTYN LI G C +G  
Sbjct: 188 SRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRF 247

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           +      ++M  Q   P   TY  ++H L    K+     +L E   KG+  + +TYN L
Sbjct: 248 DDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNAL 307

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           INGYC+ G+ K A  +   M    + P + T+  +I       ++ +A          G+
Sbjct: 308 INGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGL 367

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P+ V FN+LI G C+ G  + A  LL  M+   V PD  TY   +   C +G++EEA  
Sbjct: 368 SPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHS 427

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L   +  +GIK  ++        Y +L+ G C+  + D A  L+ +M S+   PD +TY 
Sbjct: 428 LFSCLPMKGIKAHNV-------IYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYN 480

Query: 302 SLIEGIASVDK 312
           +LI+G+  V +
Sbjct: 481 TLIDGLCKVKR 491



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 160/344 (46%), Gaps = 43/344 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNT---------- 50
           M   G  P+  TY + ++  CK   L +A   L +M+E GL P   TYN           
Sbjct: 81  MLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGL 140

Query: 51  --------------------------LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
                                     LI G C  G ++ A     +M +    P   TY 
Sbjct: 141 LAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYT 200

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +L+  L   R++ EA+ +L EM  KG+VP+ +TYN LI G C+ G       L ++M  +
Sbjct: 201 VLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQ 260

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
              P   TYT ++  L K  ++    ++    + KG+  +++ +NALI+G+C  G+++ A
Sbjct: 261 RHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAA 320

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +L+ M R +V+P   T+N ++HG C  GKV +A   L QM   G+ P+ ++F      
Sbjct: 321 LDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTF------ 374

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            N+LI G C   E  +A  LL  M   G+ PD  TY   I+ + 
Sbjct: 375 -NSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALC 417



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 145/320 (45%), Gaps = 9/320 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   V P   T+   + G C  G++ +A   L QM   GL P  VT+N+LI G C+ G 
Sbjct: 327 MKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGE 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A    D M + G++P   TY + I  L  E ++ EA  +   +  KGI   ++ Y  
Sbjct: 387 RKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTS 446

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC+ G+   AF L ++M  +   P + TY +LI  L K  R+  A  L +    +G
Sbjct: 447 LVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQG 506

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    FN LI     +     A  + ++M      PD+ TY   +     +G  +E  
Sbjct: 507 IEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEEN 566

Query: 241 --RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
               + +M   G+ PD         TYNA+I+        + A     +M+S  I PD  
Sbjct: 567 IDMAVVEMHEAGVFPD-------VETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCT 619

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY  L+  + + D +    N
Sbjct: 620 TYSILLNYMCNKDDSDAFDN 639



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 142/395 (35%), Gaps = 93/395 (23%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G++  +  Y S V G C+ G ++ A  ++E+M     +P   TYNTLIDG C    L+ 
Sbjct: 435 KGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDR 494

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK------------------- 104
           A    D+M KQGI PT  T+N+LI ++L ++K  +A  M +                   
Sbjct: 495 AIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKIS 554

Query: 105 ------------------EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH-------- 138
                             EM E G+ PD  TYN +I  Y   G  +KAF  H        
Sbjct: 555 TDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPI 614

Query: 139 -----------------------------------------DEMIHKGIQPTMLTYTSLI 157
                                                    ++M      P + TY +L+
Sbjct: 615 DPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALL 674

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L  Q R+ E + L        +L D  M + L+  +C       A    + M      
Sbjct: 675 RGLCNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQ 734

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P   +   L+ G C  G    A  +   M   G       +N   + +  LI  L +   
Sbjct: 735 PGLKSCCLLLSGLCDSGDHGMAVSIFSDMLGLG-------YNYDEVVWKLLIDCLHEKGH 787

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
                E+L  M +K       TY SL+  +A +++
Sbjct: 788 AGACLEMLSVMDAKKCVASTRTYASLVRLVAELNE 822



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 79/187 (42%), Gaps = 32/187 (17%)

Query: 154 TSLIFVLSKQNRMIEADQLFENF---LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
            +LI   S+ +R      L  +F   L  G  P+   +N LI+ HC    +  A + L  
Sbjct: 56  AALIAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVR 115

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR-GIKPDHISFN---------- 259
           M    + PD  TYN LM G CR G +  A  L  QM RR G   D  S+           
Sbjct: 116 MREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAG 175

Query: 260 ------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
                             P   TY  L+ GLCK +    AE LL EMV+KG+ P+  TY 
Sbjct: 176 RIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYN 235

Query: 302 SLIEGIA 308
           +LI G+ 
Sbjct: 236 ALIGGLC 242



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 20/244 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG- 59
           M   GV PD  TY + +      G  E+A     +M    + P   TY+ L++  CNK  
Sbjct: 574 MHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDD 633

Query: 60  ----------------NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
                           NL+  F   ++M +    P  STY  L+  L  + ++ E + +L
Sbjct: 634 SDAFDNEKIWKMVDVRNLQELF---EQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLL 690

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            +M    I+ D    + L+  YC     ++A      M H+  QP + +   L+  L   
Sbjct: 691 LKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDS 750

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
                A  +F + L  G   D V++  LID     G+      +L  MD  K      TY
Sbjct: 751 GDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKKCVASTRTY 810

Query: 224 NTLM 227
            +L+
Sbjct: 811 ASLV 814


>gi|224115398|ref|XP_002317023.1| predicted protein [Populus trichocarpa]
 gi|222860088|gb|EEE97635.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 170/345 (49%), Gaps = 30/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD+ +Y   V+ +CK G +  A +++E+M+ENG     VTYN+L+ G C  GN
Sbjct: 11  MIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRGLCMHGN 70

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  +    D+++ +G++P   TY+ L+     ER + EA  +L E+  KG  P+ ++YN+
Sbjct: 71  LNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLVSYNV 130

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+ G  ++A     ++  KG  P +++Y  ++  L  + R  EA+QL     ++ 
Sbjct: 131 LLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDSEE 190

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N LI     +G IE AF +L EM R    P   TYN ++   C++GK++   
Sbjct: 191 RSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVI 250

Query: 241 RLLDQMKRRGIKPDHISFNP---------------------------TRLTYNALIQGLC 273
           + LDQM      P+  +FN                            T   Y  +I  LC
Sbjct: 251 KCLDQMIHHRCNPNEGTFNAIAVLCKQGRVPEAFSIIQNLGNKQRSSTHDFYKGVITSLC 310

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
           +      A +LL EM   G  PD  TY SLI G+     +D+A E
Sbjct: 311 RKGNTYPAFQLLYEMTKFGFVPDPYTYSSLIRGLCIEGMLDEALE 355



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 153/306 (50%), Gaps = 8/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G QP+  +Y   ++G+CKEGR EEA R    +   G  P  V+YN ++   C++G  E
Sbjct: 118 AKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWE 177

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM  +   P+  TYN+LI  L    ++  A ++L EM      P + TYN +I
Sbjct: 178 EANQLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPII 237

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
              C+ G         D+MIH    P   T+ + I VL KQ R+ EA  + +N   K   
Sbjct: 238 AHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNA-IAVLCKQGRVPEAFSIIQNLGNKQRS 296

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
                +  +I   C  GN   AF LL EM +    PD  TY++L+ G C +G ++EA  +
Sbjct: 297 STHDFYKGVITSLCRKGNTYPAFQLLYEMTKFGFVPDPYTYSSLIRGLCIEGMLDEALEI 356

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              ++          + P    +NALI G CK+   DL+ ++L  MV KG TP++ TY  
Sbjct: 357 FRLLEEN-------DYRPILDNFNALILGFCKSGRTDLSLDILEMMVEKGYTPNETTYTI 409

Query: 303 LIEGIA 308
           ++EGIA
Sbjct: 410 IVEGIA 415



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 149/275 (54%), Gaps = 7/275 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           +++A+R++E M E+G++P A +Y  L++  C +GN+  A    ++M + G      TYN 
Sbjct: 1   MKKATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNS 60

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+  L M   + ++  +L ++  KG+VP+  TY+ L+    +     +A  L DE+I KG
Sbjct: 61  LVRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKG 120

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            QP +++Y  L+  L K+ R  EA + F +  +KG  P++V +N ++   C  G  E A 
Sbjct: 121 WQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEAN 180

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            LL EMD  +  P  VTYN L+      G++E A  +LD+M R        SF P+  TY
Sbjct: 181 QLLAEMDSEERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRA-------SFKPSATTY 233

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           N +I  LCK  + DL  + L +M+     P++ T+
Sbjct: 234 NPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTF 268



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 144/293 (49%), Gaps = 8/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G  P+  +Y   +  +C EGR EEA+++L +M      P+ VTYN LI      G 
Sbjct: 151 LPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDSEERSPSLVTYNILIGSLAFHGR 210

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF   DEMV+    P+A+TYN +I  L  E K+      L +M      P+  T+N 
Sbjct: 211 IEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNA 270

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C+ G   +AFS+   + +K    T   Y  +I  L ++     A QL       G
Sbjct: 271 -IAVLCKQGRVPEAFSIIQNLGNKQRSSTHDFYKGVITSLCRKGNTYPAFQLLYEMTKFG 329

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD   +++LI G C  G ++ A  + + ++     P    +N L+ G C+ G+ + + 
Sbjct: 330 FVPDPYTYSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALILGFCKSGRTDLSL 389

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            +L+ M  +G       + P   TY  +++G+   +E +LA E+L+E++ + +
Sbjct: 390 DILEMMVEKG-------YTPNETTYTIIVEGIAHEEEKELAAEVLKELLLRQV 435



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 7/186 (3%)

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           KKA  + + MI  GI P   +YT L+  L K+  +  A QL E     G   + V +N+L
Sbjct: 2   KKATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSL 61

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           + G C +GN+ ++  LL ++    + P+E TY+ L+    ++  V EA +LLD++  +G 
Sbjct: 62  VRGLCMHGNLNQSLQLLDKLMWKGLVPNEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGW 121

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           +P+ +S       YN L+ GLCK    + A    R++ SKG  P+  +Y  ++  +    
Sbjct: 122 QPNLVS-------YNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEG 174

Query: 312 KAAESS 317
           +  E++
Sbjct: 175 RWEEAN 180



 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           + + + G CK GR + +  +LE M E G  P   TY  +++G  ++   E+A     E++
Sbjct: 372 FNALILGFCKSGRTDLSLDILEMMVEKGYTPNETTYTIIVEGIAHEEEKELAAEVLKELL 431

Query: 73  KQGIM 77
            + +M
Sbjct: 432 LRQVM 436


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 176/329 (53%), Gaps = 33/329 (10%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG+  ++ T+ + ++G+CK  R+ EA  ++++MK+    P  +TY TL  GYC  G+++
Sbjct: 517 ARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMD 576

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    +E+   G  PT   +N LI    + ++  + +D+L EM  +G+ P+++ Y  LI
Sbjct: 577 RASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALI 636

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+C+ G+   A++L+ EMI KG+ P +   +SL+    ++ +  EA+ + +N +   M+
Sbjct: 637 AGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMI 696

Query: 183 PDI--------------------------VMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           PDI                          +M+N +I G C  G IE A +LL ++     
Sbjct: 697 PDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGF 756

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
             D  TY++L+HG    G V+ A  L D M   G+ P+ +       TYN+LI GLCK+ 
Sbjct: 757 VADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIV-------TYNSLIYGLCKSG 809

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIE 305
           E   A  L +++ +KGI+P+  TY +LI+
Sbjct: 810 ELSRAVSLFKKLWTKGISPNAITYNTLID 838



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 33/306 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P++  YG+ ++G CKEG L  A  +  +M E GLVP     ++L+  +  KG 
Sbjct: 620 MSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGK 679

Query: 61  LEMAFSFRDEMVKQGIMPTAST--------------------------YNLLIHELLMER 94
            + A      +V   ++P  S                           +N++I  L    
Sbjct: 680 FDEANLVLQNLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLG 739

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           ++ +A ++L ++ +KG V D+ TY+ LI+G    G    AF L D M+  G+ P ++TY 
Sbjct: 740 RIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYN 799

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           SLI+ L K   +  A  LF+    KG+ P+ + +N LID HC +G I  AF L + M   
Sbjct: 800 SLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEE 859

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            +HP   TY+ L++G C QG +EEA +LLDQM    + P+++       TY  LIQG  +
Sbjct: 860 GIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYV-------TYWTLIQGYVR 912

Query: 275 NQEGDL 280
            +  D+
Sbjct: 913 CESVDV 918



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           +  RG  P+  TY   V G C E  +EEA  +++++++N  LV     +  +I+GYC  G
Sbjct: 304 LPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMG 363

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +E A    +EMV   +      YN++I+      +MVEA ++L EM   G+ PD+ +YN
Sbjct: 364 RMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYN 423

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYC+ G   KAF  ++ M+  G   T LTY +L+        + +A +L+   L K
Sbjct: 424 SLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKK 483

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P+ +  + L+DG   +G  E+A +L KE     +  +  T+NT+++G C+  ++ EA
Sbjct: 484 GIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEA 543

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+MK+    PD I       TY  L  G CK  + D A  +L E+ + G  P    
Sbjct: 544 EELVDKMKQWRCPPDII-------TYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEF 596

Query: 300 YFSLIEG 306
           + SLI G
Sbjct: 597 FNSLITG 603



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 169/367 (46%), Gaps = 68/367 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ------------------------- 35
           MK     PD  TY +  SG CK G ++ ASR+L +                         
Sbjct: 550 MKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQ 609

Query: 36  ----------MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                     M   GL P  V Y  LI G+C +G+L  A++   EM+++G++P     + 
Sbjct: 610 HGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSS 669

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPD--------------------------SITYN 119
           L+     + K  EA+ +L+ +    ++PD                           I +N
Sbjct: 670 LVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWN 729

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I G C+ G  + A +L  ++  KG      TY+SLI   S    +  A  L +  L+ 
Sbjct: 730 IVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSV 789

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P+IV +N+LI G C +G + RA SL K++    + P+ +TYNTL+   C+ G + EA
Sbjct: 790 GLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEA 849

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L  +M   GI       +PT  TY+ LI GLC     + A +LL +M+   + P+  T
Sbjct: 850 FKLKQRMIEEGI-------HPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVT 902

Query: 300 YFSLIEG 306
           Y++LI+G
Sbjct: 903 YWTLIQG 909



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 161/305 (52%), Gaps = 7/305 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K++ +  D   +G+ ++G C+ GR+E+A+R+L +M ++ L      YN +I+GYC  G +
Sbjct: 341 KNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRM 400

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A +   EM   G+ P   +YN L+     +  M +A +    M   G    ++TYN L
Sbjct: 401 VEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNAL 460

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           + G+C  G+   A  L   M+ KGI P  ++ ++L+    K  +  +A  L++  LA+G+
Sbjct: 461 LKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGL 520

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             +   FN +I+G C    +  A  L+ +M + +  PD +TY TL  G C+ G ++ A R
Sbjct: 521 AKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASR 580

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +L++++  G       F PT   +N+LI G    ++     ++L EM ++G++P+   Y 
Sbjct: 581 ILNELENLG-------FAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYG 633

Query: 302 SLIEG 306
           +LI G
Sbjct: 634 ALIAG 638



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 159/350 (45%), Gaps = 32/350 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +T        CK   +  A   +E+M + G+    V Y+ +++GYC  G 
Sbjct: 234 MQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQ 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIVPDSITYN 119
              A    D +  +G  P   TY LL+     E+ M EA+ +++E+ + K +V D   + 
Sbjct: 294 TNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFG 353

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +INGYC+ G  + A  L +EM+   +Q  +  Y  +I    K  RM+EA  +       
Sbjct: 354 AVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGV 413

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD   +N+L+DG+C  G + +AF     M R       +TYN L+ G C  G +++A
Sbjct: 414 GVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDA 473

Query: 240 RRLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQG 271
            RL   M ++GI P+ IS                                  T+N +I G
Sbjct: 474 LRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVING 533

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSN 318
           LCK +    AEEL+ +M      PD  TY +L  G   I  +D+A+   N
Sbjct: 534 LCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILN 583



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 175/365 (47%), Gaps = 58/365 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PD+Y+Y S V G CK+G + +A      M  NG   T +TYN L+ G+C+ G+
Sbjct: 410 MTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGS 469

Query: 61  LEMAFSFRDEMVKQGIMPT-----------------------------------ASTYNL 85
           ++ A      M+K+GI P                                     +T+N 
Sbjct: 470 IDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNT 529

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I+ L    +M EA++++ +M +    PD ITY  L +GYC+ G+  +A  + +E+ + G
Sbjct: 530 VINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLG 589

Query: 146 IQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
             PT+  + SLI    ++KQ+  +  D LFE    +G+ P+ V + ALI G C  G++  
Sbjct: 590 FAPTIEFFNSLITGHFIAKQHGKVN-DILFE-MSNRGLSPNTVAYGALIAGWCKEGDLHT 647

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS------ 257
           A++L  EM    + P+    ++L+    R+GK +EA  +L  +    + PD  +      
Sbjct: 648 AYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIG 707

Query: 258 -------------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                         +  ++ +N +I GLCK    + A+ LL ++  KG   D+ TY SLI
Sbjct: 708 KVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLI 767

Query: 305 EGIAS 309
            G ++
Sbjct: 768 HGCSA 772



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 155/352 (44%), Gaps = 43/352 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G +    +  S ++ + + G L     + EQM+  G +P   T   +   YC    
Sbjct: 199 MRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKG 258

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F +EM K G+      Y+ +++      +  +A  ML  +  +G  P+ +TY +
Sbjct: 259 VVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTL 318

Query: 121 L------------------------------------INGYCRCGNAKKAFSLHDEMIHK 144
           L                                    INGYC+ G  + A  L +EM+  
Sbjct: 319 LVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDS 378

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            +Q  +  Y  +I    K  RM+EA  +       G+ PD   +N+L+DG+C  G + +A
Sbjct: 379 RLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKA 438

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           F     M R       +TYN L+ G C  G +++A RL   M ++GI P+ IS       
Sbjct: 439 FETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEIS------- 491

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + L+ G  K+ + + A  L +E +++G+  +  T+ ++I G+  +++  E+
Sbjct: 492 CSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEA 543



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 165/341 (48%), Gaps = 32/341 (9%)

Query: 10  SYTYGSF---VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           S++  SF   +  +   G+L+ A ++ ++M+  G   +  + N++++     G+L    +
Sbjct: 170 SFSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVA 229

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             ++M + G +P   T  ++       + +V A + ++EM + G+  + + Y+ ++NGYC
Sbjct: 230 VFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYC 289

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-KGMLPDI 185
             G    A  + D +  +G  P ++TYT L+     +  M EA+ + +     K ++ D 
Sbjct: 290 EVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDE 349

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            +F A+I+G+C  G +E A  LL EM   ++  +   YN +++G C+ G++ EA  +L +
Sbjct: 350 AVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHE 409

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
           M   G++PD  S+N                             T LTYNAL++G C    
Sbjct: 410 MTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGS 469

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            D A  L   M+ KGI P++ +  +L++G     K  ++ N
Sbjct: 470 IDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALN 510



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 44/260 (16%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           +   + G+CK GR+E+A  +L  +K+ G V    TY++LI G    G +++AF  RD M+
Sbjct: 728 WNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTML 787

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
                                                G+ P+ +TYN LI G C+ G   
Sbjct: 788 -----------------------------------SVGLTPNIVTYNSLIYGLCKSGELS 812

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A SL  ++  KGI P  +TY +LI    K   + EA +L +  + +G+ P +  ++ LI
Sbjct: 813 RAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILI 872

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ------- 245
           +G CT G +E A  LL +M    V P+ VTY TL+ G  R   V+     LDQ       
Sbjct: 873 NGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCESVDVPIMPLDQSTIVVKA 932

Query: 246 MKRRGI-KPDHISFNPTRLT 264
             RR + +P  +S  P RLT
Sbjct: 933 SPRRAVRRPGSVS-RPARLT 951



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 143/292 (48%), Gaps = 13/292 (4%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           ++E  KE     +A +++ L+    N G L+ A    DEM   G   +  + N +++ L 
Sbjct: 162 LVEVYKEFSF--SAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLA 219

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
               +     + ++M   G +PD  T  I+   YC+      A    +EM   G++  ++
Sbjct: 220 QTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLV 279

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            Y +++    +  +  +A ++ ++   +G  P+IV +  L+ G+C   N+E A  +++E+
Sbjct: 280 AYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEI 339

Query: 212 DRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
            + K +  DE  +  +++G C+ G++E+A RLL++M    ++ +          YN +I 
Sbjct: 340 RKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVN-------LFVYNIMIN 392

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAESSNS 319
           G CK      A  +L EM   G+ PD  +Y SL++G      ++KA E+ N+
Sbjct: 393 GYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNT 444


>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic-like [Glycine max]
          Length = 572

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 166/306 (54%), Gaps = 8/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G +P+  +Y   ++G+CKEGR EEA ++ +++   G  P+ V++N L+   C +G  E
Sbjct: 232 AKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWE 291

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM K+   P+  TYN+LI  L +  +  +A  +L EM   G    + +YN +I
Sbjct: 292 EANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPII 351

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
              C+ G         D+MIH+   P   TY++ I +LS+Q ++ EA  + ++  +K   
Sbjct: 352 ARLCKEGKVDLVLKCLDQMIHRRCHPNEGTYSA-ISMLSEQGKVQEAFFIIQSLGSKQNF 410

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P    +  LI   C  GN   AF +L EM +    PD  TY++L+ G CR+G ++EA ++
Sbjct: 411 PMHDFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKI 470

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              ++    +PD  +       YNALI G CK Q  DL+ E+   MV+KG  P++NTY  
Sbjct: 471 FRILEENDHRPDIDN-------YNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTI 523

Query: 303 LIEGIA 308
           L+EG+A
Sbjct: 524 LVEGLA 529



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 166/334 (49%), Gaps = 27/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD+ +Y   V+ +CK G +  A +++E+M+ +G     VTYNTL+ G C  GN
Sbjct: 125 MVGSGIIPDAASYTHLVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGN 184

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  +    D + K+G++P A TY+ L+     ER + EA  +L ++  KG  P+ ++YN+
Sbjct: 185 LNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNV 244

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+ G  ++A  L  E+  KG  P+++++  L+  L  + R  EA++L      + 
Sbjct: 245 LLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKED 304

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N LI     NG  E+AF +L EM R        +YN ++   C++GKV+   
Sbjct: 305 QPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVL 364

Query: 241 RLLDQMKRRGIKPDHISFN---------------------------PTRLTYNALIQGLC 273
           + LDQM  R   P+  +++                           P    Y  LI  LC
Sbjct: 365 KCLDQMIHRRCHPNEGTYSAISMLSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLC 424

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +      A ++L EM   G TPD  TY SLI G+
Sbjct: 425 RKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGM 458



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 162/313 (51%), Gaps = 8/313 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G +P+       +  +CK  +  +A R++E M  +G++P A +Y  L++  C +GN+  
Sbjct: 93  KGQKPEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGY 152

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    ++M   G      TYN L+  L M   + ++  +L  + +KG++P++ TY+ L+ 
Sbjct: 153 AIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLE 212

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
              +     +A  L D++I KG +P +++Y  L+  L K+ R  EA +LF+    KG  P
Sbjct: 213 AAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSP 272

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +V FN L+   C  G  E A  LL EMD+    P  VTYN L+      G+ E+A ++L
Sbjct: 273 SVVSFNILLRSLCYEGRWEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVL 332

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D+M R G K    S+NP       +I  LCK  + DL  + L +M+ +   P++ TY S 
Sbjct: 333 DEMTRSGFKASATSYNP-------IIARLCKEGKVDLVLKCLDQMIHRRCHPNEGTY-SA 384

Query: 304 IEGIASVDKAAES 316
           I  ++   K  E+
Sbjct: 385 ISMLSEQGKVQEA 397



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 117/277 (42%), Gaps = 34/277 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  P   ++   +  +C EGR EEA+ +L +M +    P+ VTYN LI      G  E 
Sbjct: 268 KGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQ 327

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKM--------------------------- 96
           AF   DEM + G   +A++YN +I  L  E K+                           
Sbjct: 328 AFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVLKCLDQMIHRRCHPNEGTYSAISM 387

Query: 97  -------VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
                   EA  +++ +G K   P    Y  LI   CR GN   AF +  EM   G  P 
Sbjct: 388 LSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTPD 447

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             TY+SLI  + ++  + EA ++F         PDI  +NALI G C     + +  +  
Sbjct: 448 SYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDLSIEIFL 507

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            M      P+E TY  L+ G   + + + A  L+ ++
Sbjct: 508 MMVNKGCVPNENTYTILVEGLAFEEETDIAADLMKEL 544



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 40/246 (16%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P   TY   ++ +   GR E+A ++L++M  +G   +A +YN +I   C +G +++    
Sbjct: 307 PSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLVLKC 366

Query: 68  RDEMVKQGIMPTASTYNL----------------------------------LIHELLME 93
            D+M+ +   P   TY+                                   LI  L  +
Sbjct: 367 LDQMIHRRCHPNEGTYSAISMLSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLCRK 426

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG---NAKKAFSLHDEMIHKGIQPTM 150
                A  ML EM + G  PDS TY+ LI G CR G    A K F + +E  H+   P +
Sbjct: 427 GNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHR---PDI 483

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
             Y +LI    K  R   + ++F   + KG +P+   +  L++G       + A  L+KE
Sbjct: 484 DNYNALILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAADLMKE 543

Query: 211 MDRMKV 216
           +   KV
Sbjct: 544 LYLKKV 549



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 63/115 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDSYTY S + GMC+EG L+EA ++   ++EN   P    YN LI G+C    
Sbjct: 439 MTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQR 498

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            +++      MV +G +P  +TY +L+  L  E +   A D++KE+  K ++  S
Sbjct: 499 TDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAADLMKELYLKKVLSQS 553



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 2/180 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   P+  TY S +S + ++G+++EA  +++ +      P    Y  LI   C KGN
Sbjct: 370 MIHRRCHPNEGTY-SAISMLSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLCRKGN 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF    EM K G  P + TY+ LI  +  E  + EA  + + + E    PD   YN 
Sbjct: 429 TYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNA 488

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM-IEADQLFENFLAK 179
           LI G+C+      +  +   M++KG  P   TYT L+  L+ +    I AD + E +L K
Sbjct: 489 LILGFCKAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAADLMKELYLKK 548


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 160/302 (52%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 197 FRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY  LI+ L K+  + +A+ L      KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  GN++ AF     M    +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 XMLSVGLKPD-------AXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 139/229 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 203 MXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A+D++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ GN   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 165/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   +    + G L +A       +E+       T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+ +M +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYN L++G C++G +++A
Sbjct: 242 GLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+ +M  +G+KPD       ++TY  LI G CK    B A E    M+ + I  DD  
Sbjct: 302 NDLIXEMSMKGLKPD-------KITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    +  ++
Sbjct: 355 YTALISGLCQEGRXVDA 371


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD+ T  + + G+C  G ++ A    +++   G     V+Y TLI+G C  G  + 
Sbjct: 157 RGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKA 216

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 ++    + P    Y  +IH L   +++ +A D+  EM  KGI P+  TYN LI 
Sbjct: 217 VARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIY 276

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  GN K+AFSL +EM  K I P + T+  LI  L K+ ++ EA  LFE    K M P
Sbjct: 277 GFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFP 336

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +IV + +LIDG C N ++ERA +L K+M    + PD  +Y  L+   C+ G++E A++  
Sbjct: 337 NIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFF 396

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +  +G    H++      TYN +I GLCK        +L  +M  KG  PD  T+ ++
Sbjct: 397 QHLLVKGY---HLNVR----TYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTI 449

Query: 304 IEGIASVDK 312
           I  +   D+
Sbjct: 450 ICALFEKDE 458



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 160/301 (53%), Gaps = 7/301 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P ++ + + +S + K         + +Q + NG+ P   T N LI+ +C+  ++  AFS 
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K+G  P A T N LI  L    ++  A     ++  +G   D ++Y  LING C+
Sbjct: 151 FANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCK 210

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K    L  ++    ++P ++ YT++I  L K  R+ +A  L+   + KG+ P++  
Sbjct: 211 AGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFT 270

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI G C  GN++ AFSLL EM    ++PD  T+N L+    ++GK++EA  L ++MK
Sbjct: 271 YNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMK 330

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            + + P+ +       TY +LI GLCKN   + A  L ++M  +GI PD  +Y  L++ +
Sbjct: 331 HKNMFPNIV-------TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDAL 383

Query: 308 A 308
            
Sbjct: 384 C 384



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 154/291 (52%), Gaps = 7/291 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q D  +YG+ ++G+CK G  +  +R+L +++ + + P  V Y T+I   C    + 
Sbjct: 191 AQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVG 250

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM+ +GI P   TYN LI+   +   + EA  +L EM  K I PD  T+NILI
Sbjct: 251 DACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILI 310

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +   + G   +A SL +EM HK + P ++TYTSLI  L K + +  A  L +    +G+ 
Sbjct: 311 DALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ 370

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +  L+D  C  G +E A    + +     H +  TYN +++G C+ G   +   L
Sbjct: 371 PDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDL 430

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             +M+ +G  PD I       T+  +I  L +  E D AE+ LREM+++G+
Sbjct: 431 KSKMEGKGCMPDAI-------TFKTIICALFEKDENDKAEKFLREMIARGL 474



 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 138/251 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   V+PD   Y + +  +CK  R+ +A  +  +M   G+ P   TYNTLI G+C  GN
Sbjct: 224 LEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGN 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AFS  +EM  + I P   T+N+LI  L  E K+ EA  + +EM  K + P+ +TY  
Sbjct: 284 LKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTS 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + ++A +L  +M  +GIQP + +YT L+  L K  R+  A Q F++ L KG
Sbjct: 344 LIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              ++  +N +I+G C  G       L  +M+     PD +T+ T++     + + ++A 
Sbjct: 404 YHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAE 463

Query: 241 RLLDQMKRRGI 251
           + L +M  RG+
Sbjct: 464 KFLREMIARGL 474



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 98/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + + PD YT+   +  + KEG+++EA  + E+MK   + P  VTY +LIDG C   +
Sbjct: 294 MKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHH 353

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +   +M +QGI P   +Y +L+  L    ++  A    + +  KG   +  TYN+
Sbjct: 354 LERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNV 413

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G       L  +M  KG  P  +T+ ++I  L +++   +A++     +A+G
Sbjct: 414 MINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARG 473

Query: 181 ML 182
           +L
Sbjct: 474 LL 475



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P    F+ ++     N +     SL K+     V P+  T N L++  C    +  A  +
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              + +RG  PD I       T N LI+GLC   E   A     ++V++G   D  +Y +
Sbjct: 151 FANILKRGYHPDAI-------TLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGT 203

Query: 303 LIEGIASVDKAAES 316
           LI G+    KA E+
Sbjct: 204 LINGLC---KAGET 214


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 11/302 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+G  V G+CK  RL +A  ++E M E G  P A+ +N ++D  C +G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+ F + M   G+ PT  TYNLLI     E K+  A ++L+EM  +G  P+ +TYN 
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++G C+ G    A +L   M  K I+  +  YT+LI  L +  ++ EA  L +     G
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P    +NA++   C    I  A  L K M    + PD +T+  ++ G CR  ++++A 
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDAL 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LL QMK  G+ P  +        YN LI  L  N+ G ++E   LL+EM+S+G++P+  
Sbjct: 241 LLLQQMKSAGLAPREV-------IYNTLIDAL--NRAGRVSEAYRLLQEMISRGLSPNSR 291

Query: 299 TY 300
           TY
Sbjct: 292 TY 293



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           M E G +PT VT+  L+DG C    L  AF   + M ++G  P A  +N ++  L  E +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
             EA   ++ M   G+ P  +TYN+LI+G+C+     +A  +  EM  +G +P  +TY +
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
            +  L K  ++ +A  LF     K +  D+  +  LIDG C  G +  A+SLL EM+   
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
             P    YN ++   C+  ++ EA +L  +M   GI PD        LT+  ++ G C+ 
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDW-------LTFGMMVFGYCRG 233

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              D A  LL++M S G+ P +  Y +LI+ +    + +E+
Sbjct: 234 HRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEA 274



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  P    Y + +S +CK  R+ EA ++ ++M  +G++P  +T+  ++ GYC    
Sbjct: 176 MENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHR 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M   G+ P    YN LI  L    ++ EA  +L+EM  +G+ P+S TY +
Sbjct: 236 IDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYAL 295

Query: 121 L 121
           +
Sbjct: 296 M 296



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  T+G  V G C+  R+++A  +L+QMK  GL P  V YNTLID     G 
Sbjct: 211 MTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGR 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE 105
           +  A+    EM+ +G+ P + TY L+  +   +  +V   D  KE
Sbjct: 271 VSEAYRLLQEMISRGLSPNSRTYALMRKQQTDDSNLVVELDYRKE 315


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 174/315 (55%), Gaps = 17/315 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNKGNL 61
           RG+ PD ++Y   ++G+C E R +EA  +L  M ++G    P  V+Y+T+I+G+  +G+L
Sbjct: 46  RGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL 104

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
                  D+M+ Q I P   TYN +I  L   + + +A ++L  M + G++PD +TYN +
Sbjct: 105 -------DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++G+C  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   +G+
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PDI  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +Q KVEEA  
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +  +M+++G+       NP  +TY  +I  LCK+   + A     +M+ +G+ PD   Y 
Sbjct: 278 VFSKMRQQGL-------NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYN 330

Query: 302 SLIEGIASVDKAAES 316
           SLI  +   DK  ++
Sbjct: 331 SLIHSLCIFDKWEKA 345



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 160/309 (51%), Gaps = 14/309 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + ++G  KEG L+   +ML+Q     + P  VTYN++I   C    ++ A   
Sbjct: 86  PDVVSYSTVINGFFKEGDLD---KMLDQR----ISPNVVTYNSIIAALCKAQTVDKAMEV 138

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              MVK G+MP   TYN ++H      +  EA   LK+M   G+ PD +TYN L++  C+
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  + D M  +G++P + TY +L+   + +  ++E   L +  +  G+ P+  +
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F+ L+  +     +E A  +  +M +  ++P+ VTY T++   C+ G+VE+A    +QM 
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G++PD I        YN+LI  LC   + + AEEL  EM+ +GI      + S+I+  
Sbjct: 319 DEGLRPDSI-------VYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSH 371

Query: 308 ASVDKAAES 316
               +  ES
Sbjct: 372 CKEGRVIES 380



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 138/258 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD  TY S V G C  G+ +EA   L++M+ +G+ P  VTYN+L+D  C  G 
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M K+G+ P  +TY  L+     +  +VE   +L  M   GI P+   ++I
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  Y +    ++A  +  +M  +G+ P  +TY ++I VL K  R+ +A   FE  + +G
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD +++N+LI   C     E+A  L  EM    +    + +N+++   C++G+V E+ 
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESG 381

Query: 241 RLLDQMKRRGIKPDHISF 258
           +L D M R G+KPD I+ 
Sbjct: 382 KLFDLMVRIGVKPDIITL 399



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 11/298 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  TY S ++ +CK   +++A  +L  M ++G++P  +TYN+++ G+C+ G 
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQ 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  +   M ++G+ PD  TY  
Sbjct: 167 PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGT 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +   L D M+  GI P    ++ L+   +KQ ++ EA  +F     +G
Sbjct: 227 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  +ID  C +G +E A    ++M    + PD + YN+L+H  C   K E+A 
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPD 296
            L  +M  RGI    I F       N++I   CK  EG + E  +L   MV  G+ PD
Sbjct: 347 ELFLEMLDRGICLSTIFF-------NSIIDSHCK--EGRVIESGKLFDLMVRIGVKPD 395



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG--IT 294
           E+AR + D++ RRGI        P   +YN L+ GLC       A ELL  M   G    
Sbjct: 34  EDARHVFDELLRRGI--------PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCP 85

Query: 295 PDDNTYFSLIEG 306
           PD  +Y ++I G
Sbjct: 86  PDVVSYSTVING 97


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 171/323 (52%), Gaps = 23/323 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD+ TY   ++ +C   ++E+A  + ++MK  G+ P   TY  LID +C  G 
Sbjct: 448 MMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGL 507

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM   G  PT  TY  LIH  L  +++ +A+D+   M + G  P+ +TY  
Sbjct: 508 IEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGA 567

Query: 121 LINGYCRCGNAKKAFSLHDEMI----------------HKGIQPTMLTYTSLIFVLSKQN 164
           L++G C+ GN  KAF ++ ++I                   + P ++TY +L+  L K +
Sbjct: 568 LVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAH 627

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           ++  A +L +  L+ G  P+ ++++ALIDG C  G I+ A  +  +M +    P   TY 
Sbjct: 628 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 687

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           +L+    + G+++ A ++L QM +        S  P  +TY A+I GLC+  E + A +L
Sbjct: 688 SLIDRMFKDGRLDLAMKVLSQMLKD-------SCTPNVVTYTAMIDGLCRIGESEKALKL 740

Query: 285 LREMVSKGITPDDNTYFSLIEGI 307
           L  M  KG +P+  TY +LI+G+
Sbjct: 741 LSLMEEKGCSPNVVTYTALIDGL 763



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 160/327 (48%), Gaps = 29/327 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEE------ASRMLEQMKENGLVPTAVTYNTLIDG 54
           M + G  P    Y  F+  +C + +L        A ++  +M     V   V        
Sbjct: 372 MTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARC 431

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
            C  G  + AF    EM+++G +P  STY+ +I  L    K+ +A  + +EM   G+ PD
Sbjct: 432 LCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPD 491

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             TY ILI+ +C+ G  ++A  L +EM   G  PT++TYT+LI    K  ++ +A+ +F 
Sbjct: 492 VYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFH 551

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM----------------DRMKVHP 218
             +  G  P+ V + AL+DG C  GNI +AF +  ++                DR  + P
Sbjct: 552 RMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP 611

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           + VTY  L+ G C+  KV+ A  LLD M   G +P+HI        Y+ALI G CK  + 
Sbjct: 612 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHI-------VYDALIDGFCKAGKI 664

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIE 305
           D A+E+  +M   G  P  +TY SLI+
Sbjct: 665 DSAQEVFLQMTKCGYLPSVHTYTSLID 691



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 150/362 (41%), Gaps = 50/362 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+     P+  TY + +SG  K+ +L    R++  M   G  P    +N+L+  YCN+ +
Sbjct: 302 MRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKD 361

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-------------------- 100
              A+   + M   G  P    YN+ I  +  + K+   D                    
Sbjct: 362 YAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLN 421

Query: 101 ---------------------DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
                                 ++KEM  KG VPD+ TY+ +I   C     +KAF L  
Sbjct: 422 KVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQ 481

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM   G+ P + TYT LI    K   + +A  LFE   + G  P +V + ALI  +    
Sbjct: 482 EMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK 541

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL-------DQMKRRGIK 252
            + +A  +   M      P++VTY  L+ G C+ G + +A  +        D        
Sbjct: 542 QVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYF 601

Query: 253 P--DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           P  D  +  P  +TY AL+ GLCK  + D A ELL  M+S G  P+   Y +LI+G    
Sbjct: 602 PCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKA 661

Query: 311 DK 312
            K
Sbjct: 662 GK 663



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 152/358 (42%), Gaps = 52/358 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGR--------------------------------LEE 28
           M   G   D +T G F   +CKEGR                                 +E
Sbjct: 235 MSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDE 294

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A   L +M+ N  +P  VTY TL+ G+  K  L       + M+ +G  P  S +N L+H
Sbjct: 295 AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVH 354

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK--------AFSLHDE 140
               E+    A  +L  M   G  P  + YNI I   C  G  K         A  ++ E
Sbjct: 355 SYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSIC--GQEKLPSPDLLDLAEKIYGE 412

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+        +   +    L    +  +A QL +  + KG +PD   ++ +I   C    
Sbjct: 413 MLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK 472

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E+AF L +EM  + V PD  TY  L+   C+ G +E+A+ L ++M+  G        +P
Sbjct: 473 VEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGC-------SP 525

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAE 315
           T +TY ALI    K ++   A ++   MV  G  P+D TY +L++G+    ++ KA E
Sbjct: 526 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFE 583



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 134/303 (44%), Gaps = 8/303 (2%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            V   C+ G   EA   L ++K+ G  P+ VTYN L+    + G +++ F  + EM + G
Sbjct: 180 LVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESG 239

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
                 T     H L  E +  +A DM++    K    D++    +I+G        +A 
Sbjct: 240 FCMDRFTVGCFAHALCKEGRWADALDMIEREDFK---LDTVLCTHMISGLMEASYFDEAM 296

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
           S    M      P ++TY +L+    K+ ++    ++    + +G  P+  +FN+L+  +
Sbjct: 297 SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSY 356

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
           C   +   A+ LL  M      P  V YN  +   C Q K+     LLD  ++  I  + 
Sbjct: 357 CNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSP-DLLDLAEK--IYGEM 413

Query: 256 ISFNPT--RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           ++ N    ++      + LC   + D A +L++EM+ KG  PD +TY  +I  +    K 
Sbjct: 414 LAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKV 473

Query: 314 AES 316
            ++
Sbjct: 474 EKA 476



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 115/311 (36%), Gaps = 12/311 (3%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           + RG   DS      V G  ++     A   L   ++ G   T   Y+ L D     G  
Sbjct: 98  RCRGFLTDSVVVA--VLGAVRDAPELCARFFLWAERQVGYSHTGACYDALADALGFDGRA 155

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A     E+ ++         N+L+          EA + L  + + G  P  +TYN L
Sbjct: 156 RDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNAL 215

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +      G     F +  EM   G      T       L K+ R  +A  + E    +  
Sbjct: 216 VQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIER---EDF 272

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             D V+   +I G       + A S L  M      P+ VTY TL+ G  ++ ++   +R
Sbjct: 273 KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKR 332

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +++ M   G  P     NP+   +N+L+   C  ++   A +LL  M + G  P    Y 
Sbjct: 333 IINMMMTEGCNP-----NPS--LFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 385

Query: 302 SLIEGIASVDK 312
             I  I   +K
Sbjct: 386 IFIGSICGQEK 396


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 174/315 (55%), Gaps = 17/315 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNKGNL 61
           RG+ PD ++Y   ++G+C E R +EA  +L  M ++G    P  V+Y+T+I+G+  +G+L
Sbjct: 46  RGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL 104

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
                  D+M+ Q I P   TYN +I  L   + + +A ++L  M + G++PD +TYN +
Sbjct: 105 -------DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++G+C  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   +G+
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PDI  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +Q KVEEA  
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +  +M+++G+       NP  +TY  +I  LCK+   + A     +M+ +G+ PD   Y 
Sbjct: 278 VFSKMRQQGL-------NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYN 330

Query: 302 SLIEGIASVDKAAES 316
           SLI  +   DK  ++
Sbjct: 331 SLIHSLCIFDKWEKA 345



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 156/307 (50%), Gaps = 17/307 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD  TY S V G C  G+ +EA   L++M+ +G+ P  VTYN+L+D  C  G 
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M K+G+ P  +TY  L+     +  +VE   +L  M   GI P+   ++I
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  Y +    ++A  +  +M  +G+ P  +TY ++I VL K  R+ +A   FE  + +G
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD +++N+LI   C     E+A  L  EM    +    + +N+++   C++G+V E+ 
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESG 381

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D M R G+KPD I+              L +N E   A++L     S G+ P+  TY
Sbjct: 382 KLFDLMVRIGVKPDIIT--------------LGRNDE---AKDLFVAFSSNGLVPNYWTY 424

Query: 301 FSLIEGI 307
             + E I
Sbjct: 425 RLMAENI 431



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 160/309 (51%), Gaps = 14/309 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + ++G  KEG L+   +ML+Q     + P  VTYN++I   C    ++ A   
Sbjct: 86  PDVVSYSTVINGFFKEGDLD---KMLDQR----ISPNVVTYNSIIAALCKAQTVDKAMEV 138

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              MVK G+MP   TYN ++H      +  EA   LK+M   G+ PD +TYN L++  C+
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  + D M  +G++P + TY +L+   + +  ++E   L +  +  G+ P+  +
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F+ L+  +     +E A  +  +M +  ++P+ VTY T++   C+ G+VE+A    +QM 
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G++PD I        YN+LI  LC   + + AEEL  EM+ +GI      + S+I+  
Sbjct: 319 DEGLRPDSI-------VYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSH 371

Query: 308 ASVDKAAES 316
               +  ES
Sbjct: 372 CKEGRVIES 380



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 11/298 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  TY S ++ +CK   +++A  +L  M ++G++P  +TYN+++ G+C+ G 
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQ 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  +   M ++G+ PD  TY  
Sbjct: 167 PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGT 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +   L D M+  GI P    ++ L+   +KQ ++ EA  +F     +G
Sbjct: 227 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  +ID  C +G +E A    ++M    + PD + YN+L+H  C   K E+A 
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPD 296
            L  +M  RGI    I F       N++I   CK  EG + E  +L   MV  G+ PD
Sbjct: 347 ELFLEMLDRGICLSTIFF-------NSIIDSHCK--EGRVIESGKLFDLMVRIGVKPD 395



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 151/330 (45%), Gaps = 48/330 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+PD  TY S +  +CK GR  EA ++ + M + GL P   TY TL+ GY  KG 
Sbjct: 177 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGA 236

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D MV+ GI P    +++L+     + K+ EA  +  +M ++G+ P+++TY  
Sbjct: 237 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGT 296

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+ G  + A    ++MI +G++P  + Y SLI  L   ++  +A++LF   L +G
Sbjct: 297 VIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRG 356

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT------------------ 222
           +    + FN++ID HC  G +  +  L   M R+ V PD +T                  
Sbjct: 357 ICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRNDEAKDLFVAFSSNG 416

Query: 223 -------YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
                  Y  +      QG +EE  +L   M+  G   D    N                
Sbjct: 417 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNF--------------- 461

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                   ++RE++ +G      TY S+I+
Sbjct: 462 --------IVRELLQRGEITRAGTYLSMID 483



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG--IT 294
           E+AR + D++ RRGI        P   +YN L+ GLC       A ELL  M   G    
Sbjct: 34  EDARHVFDELLRRGI--------PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCP 85

Query: 295 PDDNTYFSLIEGI 307
           PD  +Y ++I G 
Sbjct: 86  PDVVSYSTVINGF 98



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 25/148 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM------------------------ 36
           M  RG+   +  + S +   CKEGR+ E+ ++ + M                        
Sbjct: 352 MLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRNDEAKDLFVA 411

Query: 37  -KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
              NGLVP   TY  + +    +G LE        M   G    +   N ++ ELL   +
Sbjct: 412 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 471

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILIN 123
           +  A   L  + EK    ++ T ++ I+
Sbjct: 472 ITRAGTYLSMIDEKHFSLEASTASLFID 499


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV  +  T+ +FV   CKEG + EA ++  QM+  G+     TY  LIDG C  G 
Sbjct: 284 MKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    DEMV+QG+     TY +L+  L  ERK+ EA+D+L+ M + G+  + + Y  
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+    N++KA  L  EM +KG++  +  Y +LI  L   +++ EA  L       G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ +++  ++D    +G +  A ++L+++      P+ +TY  L+ G C+ G ++EA 
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              ++M+  G+       +P    Y AL+ GLCKN   + A +L  EMV KG++ D   Y
Sbjct: 524 SHFNKMRDLGL-------DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVY 576

Query: 301 FSLIEG 306
            +L++G
Sbjct: 577 TALLDG 582



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 164/335 (48%), Gaps = 28/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  PD  T+ S + G  K G L+E  +++E+M+ +G     VTYN LI+ +C  G 
Sbjct: 214 MKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGR 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+ +   M ++G+M    T++  +     E  + EA  +  +M  +G+  +  TY  
Sbjct: 274 METAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTC 333

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L DEM+ +G+   ++TYT L+  L K+ ++ EA+ +       G
Sbjct: 334 LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG 393

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + +++  LI GH  N N E+A  LL EM    +  D   Y  L+ G C   K++EA+
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAK 453

Query: 241 RLLDQMKRRGIKPDHI----------------------------SFNPTRLTYNALIQGL 272
            LL +M   G++P++I                             F P  +TY ALI GL
Sbjct: 454 SLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGL 513

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           CK    D A     +M   G+ P+   Y +L++G+
Sbjct: 514 CKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGL 548



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 144/304 (47%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV  +  TY   V G+CKE ++ EA  +L  M++ G+    + Y TLI G+    N
Sbjct: 354 MVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKN 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     EM  +G+    S Y  LI  L    K+ EA  +L +M E G+ P+ I Y  
Sbjct: 414 SEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++   + G   +A ++  +++  G QP ++TY +LI  L K   + EA   F      G
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLG 533

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  + AL+DG C NG +  A  L  EM    +  D+V Y  L+ G  +QG + +A 
Sbjct: 534 LDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 593

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M   G++ D          Y   I G C       A E+  EM+  GI PD   Y
Sbjct: 594 ALKAKMIDSGLQLD-------LFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVY 646

Query: 301 FSLI 304
             LI
Sbjct: 647 NCLI 650



 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 13/297 (4%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           + GRL    R+ EQ+      P   T+N +ID  C +G L  A S    M + G +P   
Sbjct: 171 RSGRL--VRRLFEQLP----APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVV 224

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           T+N LI       ++ E + +++EM   G   D +TYN LIN +C+ G  + A+     M
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAM 284

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             +G+   ++T+++ +    K+  + EA +LF     +GM  +   +  LIDG C  G +
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  LL EM R  V  + VTY  L+ G C++ KV EA  +L  M++ G++ +       
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE------ 398

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L Y  LI G   N+  + A  LL EM +KG+  D + Y +LI+G+ +V K  E+ +
Sbjct: 399 -LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKS 454



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 112/214 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+   Y + +    K G++ EA  ML+++ ++G  P  +TY  LIDG C  G+
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  ++M   G+ P    Y  L+  L     + EA  +  EM  KG+  D + Y  
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY + GN   AF+L  +MI  G+Q  +  YT  I      N M EA ++F   +  G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           + PD  ++N LI  +   GN+E A SL  EM+R+
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEMERV 672



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 123/248 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G++ D   YG+ + G+C   +L+EA  +L +M E+GL P  + Y T++D     G 
Sbjct: 424 MKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +++  G  P   TY  LI  L     + EA     +M + G+ P+   Y  
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G   +A  L +EM+HKG+    + YT+L+    KQ  + +A  L    +  G
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSG 603

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+  +   I G C    +  A  +  EM    + PD   YN L+    + G +EEA 
Sbjct: 604 LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI 663

Query: 241 RLLDQMKR 248
            L D+M+R
Sbjct: 664 SLQDEMER 671


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 177/333 (53%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 45  LETKGTQRSDIYVFSGLITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKLK 104

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    E  ++ A  +   + + G+ P  +++N
Sbjct: 105 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFN 164

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L + M   G+QP + TY+ LI  L K+++M +A+++F+  L K
Sbjct: 165 TLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDK 224

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 225 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQA 284

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
             L+D+M  +G+KPD I++                            RL    Y ALI G
Sbjct: 285 HDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISG 344

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+ +    AE++LREM+S G+ PD  TY  +I
Sbjct: 345 LCQEERYLDAEKVLREMLSVGLKPDTGTYTMII 377



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 157/284 (55%), Gaps = 7/284 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  +   + + GL P+ V++NTL++GY   G+++  
Sbjct: 120 GYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEG 179

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A++M  EM +KG+VP+ +T+  LI+G
Sbjct: 180 FRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDG 239

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 240 HCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 299

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++ +  +A ++L 
Sbjct: 300 KITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLR 359

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           +M   G+KPD         TY  +I   CK  +     +LL+EM
Sbjct: 360 EMLSVGLKPD-------TGTYTMIINEFCKKGDVWTGSKLLKEM 396



 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 128/211 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ M ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 246 VDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 306 LIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVG 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           + PD   +  +I+  C  G++     LLKEM
Sbjct: 366 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 396


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 175/349 (50%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++    ++ + V G+CK+G +  A  +++++   G  P+ +TYNTL++GY    +
Sbjct: 183 MVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKD 242

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +         M K  +    +TY +LI       K+ EA+ +  EM +KGI PD   Y  
Sbjct: 243 VGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTS 302

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN  C+ GN K+AF L DEM  + + P   TY +LI    K   M  A+ +  +  +KG
Sbjct: 303 IINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKG 362

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V+FN L+DG+C  G I+ A  L   M +     D  T N +  G CR  + EEA+
Sbjct: 363 VDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAK 422

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           RLL  M+ RG+ P+ +SF+                            P+ +TYNA I+  
Sbjct: 423 RLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERY 482

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSN 318
           CK  + + A +L+ EM  +G+ PD  TY SLI+G     +VD+A E  N
Sbjct: 483 CKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFN 531



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 162/310 (52%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PD Y Y S ++  CK G ++ A  + ++M E  LVP A TY  LI+G C  G 
Sbjct: 288 MLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGE 347

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M  +G+      +N L+     +  + EA  +   M +KG   D+ T NI
Sbjct: 348 MKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNI 407

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           + +G+CR    ++A  L   M  +G+ P +++++ LI +  K+    EA +LF+    KG
Sbjct: 408 IASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKG 467

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +NA I+ +C  G +E A+ L+ EM    + PD  TY +L+ G    G V+ A 
Sbjct: 468 KAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRAL 527

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M + G+       N   +TY  +I GL K+   D A +L  EM  +GI PDD  Y
Sbjct: 528 ELFNEMPQLGL-------NRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIY 580

Query: 301 FSLIEGIASV 310
            SLI  +  V
Sbjct: 581 SSLIASLHKV 590


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 174/315 (55%), Gaps = 17/315 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNKGNL 61
           RG+ PD ++Y   ++G+C E R +EA  +L  M ++G    P  V+Y+T+I+G+  +G+L
Sbjct: 46  RGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL 104

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
                  D+M+ Q I P   TYN +I  L   + + +A ++L  M + G++PD +TYN +
Sbjct: 105 -------DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSI 157

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++G+C  G  K+A     +M   G++P ++TY SL+  L K  R  EA ++F++   +G+
Sbjct: 158 VHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 217

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PDI  +  L+ G+ T G +     LL  M R  +HP+   ++ L+    +Q KVEEA  
Sbjct: 218 KPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 277

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +  +M+++G+       NP  +TY  +I  LCK+   + A     +M+ +G+ PD   Y 
Sbjct: 278 VFSKMRQQGL-------NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYN 330

Query: 302 SLIEGIASVDKAAES 316
           SLI  +   DK  ++
Sbjct: 331 SLIHSLCIFDKWEKA 345



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 160/309 (51%), Gaps = 14/309 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + ++G  KEG L+   +ML+Q     + P  VTYN++I   C    ++ A   
Sbjct: 86  PDVVSYSTVINGFFKEGDLD---KMLDQR----ISPNVVTYNSIIAALCKAQTVDKAMEV 138

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              MVK G+MP   TYN ++H      +  EA   LK+M   G+ PD +TYN L++  C+
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A  + D M  +G++P + TY +L+   + +  ++E   L +  +  G+ P+  +
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F+ L+  +     +E A  +  +M +  ++P+ VTY T++   C+ G+VE+A    +QM 
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G++PD I        YN+LI  LC   + + AEEL  EM+ +GI      + S+I+  
Sbjct: 319 DEGLRPDSI-------VYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSH 371

Query: 308 ASVDKAAES 316
               +  ES
Sbjct: 372 CKEGRVIES 380



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 168/367 (45%), Gaps = 49/367 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD  TY S V G C  G+ +EA   L++M+ +G+ P  VTYN+L+D  C  G 
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M K+G+ P  +TY  L+     +  +VE   +L  M   GI P+   ++I
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  Y +    ++A  +  +M  +G+ P  +TY ++I VL K  R+ +A   FE  + +G
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG 321

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD +++N+LI   C     E+A  L  EM    +    + +N+++   C++G+V E+ 
Sbjct: 322 LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESG 381

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------------------- 259
           +L D M R G+KPD I+                                           
Sbjct: 382 KLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGN 441

Query: 260 --------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
                   P   TYN ++ GLCKN+  D A  + + +    +  +  T+  +I+ +  V 
Sbjct: 442 TASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVG 501

Query: 312 KAAESSN 318
           +  E+ +
Sbjct: 502 RNDEAKD 508



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 11/298 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  TY S ++ +CK   +++A  +L  M ++G++P  +TYN+++ G+C+ G 
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQ 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A  F  +M   G+ P   TYN L+  L    +  EA  +   M ++G+ PD  TY  
Sbjct: 167 PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGT 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ GY   G   +   L D M+  GI P    ++ L+   +KQ ++ EA  +F     +G
Sbjct: 227 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  +ID  C +G +E A    ++M    + PD + YN+L+H  C   K E+A 
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPD 296
            L  +M  RGI    I F       N++I   CK  EG + E  +L   MV  G+ PD
Sbjct: 347 ELFLEMLDRGICLSTIFF-------NSIIDSHCK--EGRVIESGKLFDLMVRIGVKPD 395



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 145/361 (40%), Gaps = 79/361 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ Y +   V    K+ ++EEA  +  +M++ GL P AVTY T+ID  C  G 
Sbjct: 247 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 306

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  + ++M+ +G+ P +  YN LIH L +  K  +A+++  EM ++GI   +I +N 
Sbjct: 307 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNS 366

Query: 121 LINGYCR-----------------------------CGNAKKAFSLH-------DEMIHK 144
           +I+ +C+                              G+A++ +SL          M + 
Sbjct: 367 IIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNT 426

Query: 145 GIQ--------------------PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           G +                    P + TY  ++  L K     +A ++F+N     +  +
Sbjct: 427 GDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLE 486

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              FN +ID     G  + A  L        + P+  TY  +      QG +EE  +L  
Sbjct: 487 ARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFL 546

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M+  G   D    N                        ++RE++ +G      TY S+I
Sbjct: 547 SMEDNGCTVDSGMLNF-----------------------IVRELLQRGEITRAGTYLSMI 583

Query: 305 E 305
           +
Sbjct: 584 D 584



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 117/305 (38%), Gaps = 56/305 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M+ +G+ P++ TYG+ +  +CK GR+E+A    EQM + GL P ++ YN+LI        
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTAST--- 82
                                      D +C +G +  +    D MV+ G+ P   T   
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR 401

Query: 83  --------YNLLIHELLMERKMVEADDMLKEM----------GEKGIVPDSITYNILING 124
                   Y+L ++   +   M    D  KE                 P   TYNI+++G
Sbjct: 402 FLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHG 461

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  +   +    ++    T+  +I  L K  R  EA  LF  F + G++P+
Sbjct: 462 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 521

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  + +     G +E    L   M+      D    N ++    ++G++  A   L 
Sbjct: 522 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 581

Query: 245 QMKRR 249
            +  +
Sbjct: 582 MIDEK 586



 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG--IT 294
           E+AR + D++ RRGI        P   +YN L+ GLC       A ELL  M   G    
Sbjct: 34  EDARHVFDELLRRGI--------PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCP 85

Query: 295 PDDNTYFSLIEGI 307
           PD  +Y ++I G 
Sbjct: 86  PDVVSYSTVINGF 98



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 49/115 (42%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++ T+   +  + K GR +EA  +      NGLVP   TY  + +    +G LE      
Sbjct: 486 EARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 545

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
             M   G    +   N ++ ELL   ++  A   L  + EK    ++ T ++ I+
Sbjct: 546 LSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 600


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 44  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLR 103

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 104 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 163

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 164 TLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 223

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K M    + PD +TYNTL++G C+ G +++A
Sbjct: 224 GLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQA 283

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A +  + M+ + I  DD  
Sbjct: 284 HDLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVA 336

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 337 YTALISGLCQEGQSVDA 353



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 119 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 178

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG++P+ +T+  LI+G
Sbjct: 179 FRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDG 238

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++  M+ + + P ++TY +LI+ L K   + +A  L +    KG+ PD
Sbjct: 239 HCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPD 298

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 299 KFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLR 358

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD I       TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 359 EMLSVGLKPD-IG------TYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 411

Query: 305 EG 306
            G
Sbjct: 412 NG 413



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GL+P  VT+ TLIDG+C  G 
Sbjct: 185 MLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGR 244

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M+ Q ++P   TYN LI+ L     + +A D++ EM  KG+ PD  TY  
Sbjct: 245 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTT 304

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ + ++A+++    L+ G
Sbjct: 305 LIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVG 364

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PDI  +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 365 LKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 179

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 180 RLKSAMLANGVQPDVYTYSVLINGLCKESKMDDAN 214


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 175/349 (50%), Gaps = 45/349 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG    +  + + +SG+CK G+L EA  + ++MKE GL P  +TY TL DGYC  GN++ 
Sbjct: 501 RGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQE 560

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF  +  M +Q +  +   YN LI  L   RK+ +  D+L EM  +G+ P+ +TY  LI+
Sbjct: 561 AFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLIS 620

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C      KAF L+ EMI +G  P ++  + ++  L + +R+ EA  + +  L   +L 
Sbjct: 621 GWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDILA 680

Query: 184 ----------------------------DI-------VMFNALIDGHCTNGNIERAFSLL 208
                                       DI       +++N  IDG C +G ++ A S+L
Sbjct: 681 VHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVL 740

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
             +      PD  TY TL+H     G V+EA +L D+M  +G+ P     N T   YNAL
Sbjct: 741 SVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIP-----NIT--IYNAL 793

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAA 314
           I GLCK    D A+ L  ++  KG+ P+  TY  LI     I  +DKA+
Sbjct: 794 INGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDLDKAS 842



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ +     + + G CK G++ EA R+   M +  L P   +YNTL+DGYC +G +  A
Sbjct: 362 GLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKA 421

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   +EM+  GI PT  TYN +I  L+      +A  +   M E+G+ P+ I+   +++ 
Sbjct: 422 FMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDC 481

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G++ +A  L  E++ +G   + + + ++I  L K  +++EA  +F+     G+ PD
Sbjct: 482 FFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPD 541

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  L DG+C NGN++ AF +   M+R  +      YN+L+ G  +  K+ +   LL 
Sbjct: 542 EITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLV 601

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M+ RG+ P+ +       TY  LI G C  Q+ D A  L  EM+ +G TP+      ++
Sbjct: 602 EMQTRGLSPNVV-------TYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIV 654

Query: 305 EGIASVDKAAESS 317
             +   D+ +E++
Sbjct: 655 SSLYRDDRISEAT 667



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 175/352 (49%), Gaps = 46/352 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGL-VPTAVTYNTLIDGYCNKG 59
           M  RGV  +  T    + G CK+G+++EA ++L +++E+ L V     Y  L+DGYC  G
Sbjct: 287 MSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMG 346

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +E A   RDEM++ G+       N LI       ++ EA+ +   M +  + PD  +YN
Sbjct: 347 RMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYN 406

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF----------VLSKQNRMIE- 168
            L++GYCR G   KAF L +EM+  GI PT++TY ++I            L   + M+E 
Sbjct: 407 TLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVER 466

Query: 169 ------------------------ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
                                   A  L++  L +G     V FN +I G C  G +  A
Sbjct: 467 GVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEA 526

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            ++   M  + + PDE+TY TL  G C+ G V+EA ++   M+R+ +       + +   
Sbjct: 527 GAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAM-------SASIEM 579

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           YN+LI GL K ++ +   +LL EM ++G++P+  TY +LI G      +DKA
Sbjct: 580 YNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKA 631



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 166/331 (50%), Gaps = 29/331 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD Y     V+  C+ GR++ A  +LE+M + GL P  VTYN L++GY  +G+ E  
Sbjct: 221 GIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGV 280

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIVPDSITYNILIN 123
                 M ++G+     T  +L+     + KM EA+ +L+E+ E + +V D   Y +L++
Sbjct: 281 ERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVD 340

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+ G  + A  + DEM+  G++  M+   +LI    K  ++ EA+++F   +   + P
Sbjct: 341 GYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKP 400

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   +N L+DG+C  G + +AF L +EM    + P  VTYNT++ G    G  ++A  L 
Sbjct: 401 DCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLW 460

Query: 244 DQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGLCKN 275
             M  RG+ P+ IS                            F  + + +N +I GLCK 
Sbjct: 461 HLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKM 520

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +   A  +   M   G++PD+ TY +L +G
Sbjct: 521 GKLMEAGAVFDRMKELGLSPDEITYRTLSDG 551



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 172/379 (45%), Gaps = 66/379 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++PD Y+Y + + G C+EG++ +A  + E+M  +G+ PT VTYNT+I G  + G+
Sbjct: 393 MVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGS 452

Query: 61  LEMAFSFRDEMVKQGIMP---------------------------------TAST--YNL 85
            + A      MV++G+ P                                 T ST  +N 
Sbjct: 453 YDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNT 512

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L    K++EA  +   M E G+ PD ITY  L +GYC+ GN ++AF +   M  + 
Sbjct: 513 MISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQA 572

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           +  ++  Y SLI  L K  ++ +   L      +G+ P++V +  LI G C    +++AF
Sbjct: 573 MSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAF 632

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI-------------- 251
            L  EM      P+ V  + ++    R  ++ EA  +LD+M    I              
Sbjct: 633 HLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKN 692

Query: 252 --------------KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                         K D  +     + YN  I GLCK+ + D A  +L  ++S+G  PD+
Sbjct: 693 DLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDN 752

Query: 298 NTYFSLIEGIA---SVDKA 313
            TY +LI   +   +VD+A
Sbjct: 753 FTYCTLIHACSVSGNVDEA 771



 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 70/321 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEA------------------------------- 29
           MK  G+ PD  TY +   G CK G ++EA                               
Sbjct: 533 MKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRK 592

Query: 30  ----SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
               + +L +M+  GL P  VTY TLI G+C++  L+ AF    EM+++G  P     + 
Sbjct: 593 LNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSK 652

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVP-------------------------------- 113
           ++  L  + ++ EA  +L +M +  I+                                 
Sbjct: 653 IVSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICN 712

Query: 114 ---DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
              ++I YNI I+G C+ G   +A S+   ++ +G  P   TY +LI   S    + EA 
Sbjct: 713 SLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAF 772

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           +L +  L KG++P+I ++NALI+G C  GNI+RA  L  ++ +  + P+ VTYN L+   
Sbjct: 773 KLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCY 832

Query: 231 CRQGKVEEARRLLDQMKRRGI 251
           CR G +++A RL ++M   GI
Sbjct: 833 CRIGDLDKASRLREKMTEEGI 853



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 151/302 (50%), Gaps = 8/302 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S  +   +    + G  + A  + ++M   G VP   + + L+     KG   +A    D
Sbjct: 156 SGVFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFD 215

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           ++V  GI+P     +++++      ++  A ++L++M ++G+ P+ +TYN L+NGY   G
Sbjct: 216 QIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRG 275

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PDIVMF 188
           + +    +   M  +G+   ++T T L+    K+ +M EA++L        +L  D  ++
Sbjct: 276 DFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVY 335

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             L+DG+C  G +E A  +  EM R+ +  + V  NTL+ G C+ G+V EA R+   M  
Sbjct: 336 GVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVD 395

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             +KPD  S       YN L+ G C+  +   A  L  EM+  GITP   TY ++I+G+ 
Sbjct: 396 WNLKPDCYS-------YNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLV 448

Query: 309 SV 310
            V
Sbjct: 449 DV 450



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 85/143 (59%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           ++  Y   + G+CK G+L+EA  +L  +   G +P   TY TLI      GN++ AF  R
Sbjct: 716 NNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLR 775

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           DEM+++G++P  + YN LI+ L     +  A  +  ++ +KG+VP+++TYNILI  YCR 
Sbjct: 776 DEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRI 835

Query: 129 GNAKKAFSLHDEMIHKGIQPTML 151
           G+  KA  L ++M  +GI   ++
Sbjct: 836 GDLDKASRLREKMTEEGISTRII 858



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 125/260 (48%), Gaps = 28/260 (10%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD--------------------SIT 117
           P + +Y++L+H L   R   EA  +L+++ +     +                    S  
Sbjct: 99  PHSLSYSILLHILTHARLFPEATTVLRQLMDLHCTNNYRAYAVCNHVFSVYKEFGFCSGV 158

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++L+  +   G  K A  + DEM   G  P + + + L+  L ++     A  +F+  +
Sbjct: 159 FDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIV 218

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G++PD+ M + +++ HC  G ++ A  +L++M +  + P+ VTYN L++G   +G  E
Sbjct: 219 GTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFE 278

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM-VSKGITPD 296
              R+L  M  RG+  + +       T   L++G CK  + D AE+LLRE+   + +  D
Sbjct: 279 GVERVLRLMSERGVSRNVV-------TCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVD 331

Query: 297 DNTYFSLIEGIASVDKAAES 316
           +  Y  L++G   + +  ++
Sbjct: 332 ERVYGVLVDGYCQMGRMEDA 351



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 35/221 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE----------------NGLVPT 44
           M  RG  P+       VS + ++ R+ EA+ +L++M +                N L   
Sbjct: 638 MIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDLTLE 697

Query: 45  A-------------------VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           A                   + YN  IDG C  G L+ A S    ++ +G +P   TY  
Sbjct: 698 AQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCT 757

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LIH   +   + EA  +  EM EKG++P+   YN LING C+ GN  +A  L  ++  KG
Sbjct: 758 LIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKG 817

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + P  +TY  LI    +   + +A +L E    +G+   I+
Sbjct: 818 LVPNAVTYNILIGCYCRIGDLDKASRLREKMTEEGISTRII 858


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 161/316 (50%), Gaps = 10/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   PD YTY + + G+CKE R++EA  +L++M+  G  P+ V YN LIDG C KG+
Sbjct: 213 MPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGD 272

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D M  +G +P   TYN LIH L ++ K+ +A  +L+ M     +P+ +TY  
Sbjct: 273 LTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGT 332

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING  +   A  A  L   M  +G       Y+ LI  L K+ +  EA  L+     KG
Sbjct: 333 LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG 392

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+IV+++ L+DG C  G    A  +L  M      P+  TY++LM G  + G  EEA 
Sbjct: 393 CKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV 452

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M + G   +       +  Y+ LI GLC       A  +  +M++ GI PD   Y
Sbjct: 453 QVWKEMDKTGCSRN-------KFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAY 505

Query: 301 FSLIE---GIASVDKA 313
            S+I+   GI S+D A
Sbjct: 506 SSIIKGLCGIGSMDAA 521



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 175/348 (50%), Gaps = 35/348 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G  P    Y   + G+CK+G L   +++++ M   G VP  VTYNTLI G C KG 
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + MV    +P   TY  LI+ L+ +R+  +A  +L  M E+G   +   Y++
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G A++A SL  +M  KG +P ++ Y+ L+  L ++ +  EA ++    +A G
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+   +++L+ G    G  E A  + KEMD+     ++  Y+ L+ G C  G+V+EA 
Sbjct: 428 CLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAM 487

Query: 241 RLLDQMKRRGIKPDHISFN-------------------------------PTRLTYNALI 269
            +  +M   GIKPD ++++                               P  +TYN L+
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILL 547

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPD---DNTYF-SLIEGIASVDKA 313
            GLC  ++   A +LL  M+ +G  PD    NT+  +L E   S DK 
Sbjct: 548 DGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKG 595



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+  ++   +  +CK   ++ A  +   M E   +P   TY TL+DG C +  ++ A 
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM  +G  P+   YN+LI  L  +  +     ++  M  KG VP+ +TYN LI+G 
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   KA SL + M+     P  +TY +LI  L KQ R  +A +L  +   +G   + 
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ 362

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            +++ LI G    G  E A SL ++M      P+ V Y+ L+ G CR+GK  EA+ +L++
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNR 422

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M   G  P+         TY++L++G  K    + A ++ +EM   G + +   Y  LI+
Sbjct: 423 MIASGCLPNA-------YTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLID 475

Query: 306 GIASVDKAAES 316
           G+  V +  E+
Sbjct: 476 GLCGVGRVKEA 486



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 11/274 (4%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQG----IMPTASTYNLLIHELLMERKMVEADDM 102
           ++N++++   N+G       F D +V       I P   ++NL+I  L   R +  A ++
Sbjct: 150 SFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEV 209

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
            + M E+  +PD  TY  L++G C+     +A  L DEM  +G  P+ + Y  LI  L K
Sbjct: 210 FRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           +  +    +L +N   KG +P+ V +N LI G C  G +++A SLL+ M   K  P++VT
Sbjct: 270 KGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y TL++G  +Q +  +A RLL  M+ RG       ++  +  Y+ LI GL K  + + A 
Sbjct: 330 YGTLINGLVKQRRATDAVRLLSSMEERG-------YHLNQHIYSVLISGLFKEGKAEEAM 382

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            L R+M  KG  P+   Y  L++G+    K  E+
Sbjct: 383 SLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 12/310 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           T  S +      G  +   ++L +++    V    ++  +   Y      + A      M
Sbjct: 79  TLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRM 138

Query: 72  V-----KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           V     K+ +    S  N++I+E L  R +   D ++       I P+ +++N++I   C
Sbjct: 139 VDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALC 198

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +     +A  +   M  +   P   TY +L+  L K+ R+ EA  L +   ++G  P  V
Sbjct: 199 KLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPV 258

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           ++N LIDG C  G++ R   L+  M      P+EVTYNTL+HG C +GK+++A  LL++M
Sbjct: 259 IYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERM 318

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                 P+ +       TY  LI GL K +    A  LL  M  +G   + + Y  LI G
Sbjct: 319 VSSKCIPNDV-------TYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371

Query: 307 IASVDKAAES 316
           +    KA E+
Sbjct: 372 LFKEGKAEEA 381



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 17/242 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  P++YTY S + G  K G  EEA ++ ++M + G       Y+ LIDG C  G 
Sbjct: 423 MIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGR 482

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM---GEKGIVPDSIT 117
           ++ A     +M+  GI P    Y+ +I  L     M  A  +  EM    E    PD +T
Sbjct: 483 VKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVT 542

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YNIL++G C   +  +A  L + M+ +G  P ++T  + +  LS+++   +  + F   L
Sbjct: 543 YNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEEL 602

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
              +L         + G CT         +++ M    + P   T+  ++   C+  K+ 
Sbjct: 603 VVRLLK-----RQRVSGACT---------IVEVMLGKYLAPKTSTWAMIVREICKPKKIN 648

Query: 238 EA 239
            A
Sbjct: 649 AA 650


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 160/302 (52%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V+YNTL+ GY   G+L+  
Sbjct: 120 GYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEG 179

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM EA+++  EM   G+VP  +T+  LI+G
Sbjct: 180 FRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDG 239

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L      KG  PD
Sbjct: 240 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPD 299

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 300 KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 359

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G KPD      TR TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 360 EMLSVGXKPD------TR-TYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412

Query: 305 EG 306
            G
Sbjct: 413 NG 414



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 134/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++EA+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A  ++ EM  KG  PD ITY  
Sbjct: 246 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTT 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 306 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
             PD   +  +I+  C  G++     LLKEM R    P  VTYN LM+G
Sbjct: 366 XKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 166/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D   +   ++   + G L +A       +E+       T   +++      
Sbjct: 45  LETKGTQRSDIXVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 104

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E  +  A  +   + + G+ P  ++YN
Sbjct: 105 YFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYN 164

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GY R G+  + F L   M   G+QP + TY+ LI  L K+ +M EA++LF+  L  
Sbjct: 165 TLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVX 224

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P  V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 225 GLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQA 284

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+ +M  +G KPD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 285 HVLIXEMSLKGXKPD-------KITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 337

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 338 YTALISGLCQEGRSVDA 354



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C++G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 128 FNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVS-------YNTLMSGYIRLGDLDEGF 180

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M + G+ PD  TY  LI G+    K  E++
Sbjct: 181 RLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEAN 215


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+++TY + V G+CK+ RL+ A  ++ + ++    P  VTYNTL+      G ++ A
Sbjct: 127 GCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEA 186

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   +M ++G +PT  ++N +I  L   R++ +A ++  EM ++   P+ +TY+++I+G
Sbjct: 187 LATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDG 246

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  L D M+ +G +P ++ YT L+   S   R+  A  L    +++G +PD
Sbjct: 247 LCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPD 306

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +  +ID  C  G ++ A  + +E+   K  P+ VTY+ L+ G CR  +V+E  +++ 
Sbjct: 307 VVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMR 366

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  R          P  +TYN +I GL      + A  + REM   G  PD  TY  L 
Sbjct: 367 EMACR----------PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLK 416

Query: 305 EGIASVDK 312
             +  +D+
Sbjct: 417 RALRMIDQ 424



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 157/317 (49%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M   G+Q +  T    + G+C+ GR+ +A    +   E     P  V+Y TLI+G C  G
Sbjct: 51  MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 110

Query: 60  NLEMAFS-FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
            ++ AF  FR  +   G  P A TYN L+  L  + ++  A  ++ E  ++   PD +TY
Sbjct: 111 RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTY 170

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N L+    + G   +A +   +M  +G  PT++++ ++I  L +  R+ +A ++F   + 
Sbjct: 171 NTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMID 230

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +   P++V ++ +IDG C +  ++ A  LL  M      PD V Y  L+ G    G+++ 
Sbjct: 231 RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDS 290

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  LL +M  +G  PD +       TY  +I  LCK    D A E+ RE+V+   +P+  
Sbjct: 291 ALGLLRRMVSQGCIPDVV-------TYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVV 343

Query: 299 TYFSLIEGIASVDKAAE 315
           TY +LI G     +  E
Sbjct: 344 TYSALIGGYCRASRVDE 360



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 9/309 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S TY   + G C    L+ A  +L +M   G+     T + ++ G C  G +  A    D
Sbjct: 25  SVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFD 84

Query: 70  EMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILINGYCR 127
             ++     P   +Y  LI+ L    ++  A D+ ++M    G  P++ TYN L++G C+
Sbjct: 85  ASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCK 144

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                 A ++  E   +   P ++TY +L+  L +  R+ EA   F     +G +P +V 
Sbjct: 145 QDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVS 204

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FNA+I G C    +  A  +  EM     HP+ VTY+ ++ G C+  +++EA++LLD+M 
Sbjct: 205 FNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMV 264

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G +PD +++ P       L+ G       D A  LLR MVS+G  PD  TY  +I+ +
Sbjct: 265 SEGCRPDLVAYTP-------LVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKL 317

Query: 308 ASVDKAAES 316
             V +  ++
Sbjct: 318 CKVGRVDDA 326



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 3/257 (1%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           + R   PD  TY + ++ + + GR++EA     QM E G VPT V++N +I G C    L
Sbjct: 159 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRL 218

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    +EM+ +   P   TY+++I  L    ++ EA  +L  M  +G  PD + Y  L
Sbjct: 219 ADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 278

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           + G+   G    A  L   M+ +G  P ++TYT +I  L K  R+ +A ++F   +A   
Sbjct: 279 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 338

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P++V ++ALI G+C    ++    +++E   M   P+ VTYNT++ G     + EEA  
Sbjct: 339 SPNVVTYSALIGGYCRASRVDEGGKVMRE---MACRPNVVTYNTMIWGLSMVDRNEEAYG 395

Query: 242 LLDQMKRRGIKPDHISF 258
           +  +M   G  PD  ++
Sbjct: 396 MFREMSECGFVPDARTY 412



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 145/284 (51%), Gaps = 11/284 (3%)

Query: 33  LEQMKENG--LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
           L+  +EN   L  ++VTYN LI G+CN  +L+ AFS   EM  +G+     T ++++  L
Sbjct: 11  LQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGL 70

Query: 91  LMERKMVEADDMLKEMGEKGIV-PDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQP 148
               ++ +A +      E     PD ++Y  LING C+ G    AF L  +M+   G +P
Sbjct: 71  CRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRP 130

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
              TY +L+  L KQ+R+  A  +      +   PD+V +N L+      G ++ A +  
Sbjct: 131 NAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATF 190

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            +M      P  V++N ++ G CR  ++ +A  + ++M  R        F+P  +TY+ +
Sbjct: 191 TQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDR-------DFHPNLVTYSVV 243

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           I GLCK+ + D A++LL  MVS+G  PD   Y  L+ G ++  +
Sbjct: 244 IDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR 287



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 129/245 (52%), Gaps = 14/245 (5%)

Query: 77  MPTAS-TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           +P +S TYN+LI        +  A  +L+EM  +G+  +  T +I++ G CRCG   +A 
Sbjct: 21  LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQAL 80

Query: 136 SLHD---EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-MLPDIVMFNAL 191
              D   E+ H   QP +++YT+LI  L K  R+  A  LF   +A G   P+   +NAL
Sbjct: 81  EHFDASLELAHA--QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNAL 138

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           +DG C    ++ A +++ E  +    PD VTYNTLM    + G+V+EA     QM   G 
Sbjct: 139 VDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG- 197

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
                 + PT +++NA+I GLC+ +    A E+  EM+ +   P+  TY  +I+G+   D
Sbjct: 198 ------YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSD 251

Query: 312 KAAES 316
           +  E+
Sbjct: 252 QLDEA 256



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 20/256 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   ++ + ++G+C+  RL +A  +  +M +    P  VTY+ +IDG C    
Sbjct: 193 MTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQ 252

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D MV +G  P    Y  L+       ++  A  +L+ M  +G +PD +TY +
Sbjct: 253 LDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTV 312

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+ G    A  +  E++     P ++TY++LI    + +R+ E  ++      + 
Sbjct: 313 VIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR- 371

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N +I G       E A+ + +EM      PD  TY  L          + A 
Sbjct: 372 --PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL----------KRAL 419

Query: 241 RLLDQMKRRGIKPDHI 256
           R++DQ       P H+
Sbjct: 420 RMIDQ-------PPHV 428


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 182/370 (49%), Gaps = 69/370 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GV+PD  TY    +G    G +  A +++++M  NGL P  VTY  LI G+C  GN
Sbjct: 331 MENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGN 390

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------LMERKMV----------- 97
           +E +F  +++M+ QG+  +  TY +L+  L            L E +++           
Sbjct: 391 IEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSR 450

Query: 98  ----EADDMLKEMGEKGIVPDS-----------------------------------ITY 118
               EA ++ +EM  K I P+S                                   I Y
Sbjct: 451 GAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILY 510

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NI+I+GY + GN  +A   + ++I KGI PT++T+ SLI+   K+ ++ EA +L +    
Sbjct: 511 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 570

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G++P  V +  L++G+C  G++   F +L EM+   + P ++TY  ++ G C++G++ E
Sbjct: 571 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 630

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           + +LL  M  RG+ PD I       TYN +IQ  CK  +   A +L  +M+   + P   
Sbjct: 631 SVQLLKYMYARGLFPDQI-------TYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPV 683

Query: 299 TYFSLIEGIA 308
           TY  LI G+ 
Sbjct: 684 TYNVLINGLC 693



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ + P+S+   + +SG+ ++G + EA    + + ++ +    + YN +IDGY   GN
Sbjct: 463 MCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGN 522

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +++++GI PT  T+N LI+    + K+ EA  +L  +   G+VP S+TY  
Sbjct: 523 IGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTT 582

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC  G+    F +  EM  K I+PT +TYT ++  L K+ R+ E+ QL +   A+G
Sbjct: 583 LMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARG 642

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + +N +I   C   ++++AF L  +M +  + P  VTYN L++G C  G +++A 
Sbjct: 643 LFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDAD 702

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLL  ++ + I+        T++ Y  +I+  C   +   A     +MV +G       Y
Sbjct: 703 RLLVTLQDQSIR-------LTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDY 755

Query: 301 FSLI 304
            ++I
Sbjct: 756 SAVI 759



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 175/346 (50%), Gaps = 40/346 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+ GV  + YT    + G+C++ RL++A   L +       P+ V++N L+ G+C  G+
Sbjct: 226 IKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGS 285

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A SF   M+K G++P   +YN+L+H L +   M EA +   +M   G+ PD +TYNI
Sbjct: 286 VDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI 345

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L NG+   G    A+ +   M+  G+ P ++TYT LI    +   + E+ +L E  L++G
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   IV +  L+   C +G I+ A  LL EM+ + + PD +TY+        +G VEEA 
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS--------RGAVEEAI 457

Query: 241 RLLDQMKRRGIKPD--------------------HISFNPTR--------LTYNALIQGL 272
            L ++M  + I P+                     + F+           + YN +I G 
Sbjct: 458 ELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGY 517

Query: 273 CKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K   G++ E +   ++++ KGI+P   T+ SLI G     K AE+
Sbjct: 518 AK--LGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEA 561



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 110/195 (56%), Gaps = 4/195 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++ ++P   TY   V G+CKEGRL E+ ++L+ M   GL P  +TYNT+I  +C   +
Sbjct: 603 MEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHD 662

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF   ++M++  + P+  TYN+LI+ L +   + +AD +L  + ++ I    + Y  
Sbjct: 663 LQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTT 722

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C  G+ + A     +M+ +G + ++  Y+++I  L K+N + +A   F   L  G
Sbjct: 723 IIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHG 782

Query: 181 MLPD----IVMFNAL 191
           + PD    +VM NA 
Sbjct: 783 IPPDQDICLVMLNAF 797



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 35/285 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ P   T+ S + G CK+G+L EA ++L+ +K +GLVPT+VTY TL++GYC +G++  
Sbjct: 536 KGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHS 595

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN---- 119
            F    EM  + I PT  TY +++  L  E ++ E+  +LK M  +G+ PD ITYN    
Sbjct: 596 MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQ 655

Query: 120 -------------------------------ILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                          +LING C  GN K A  L   +  + I+ 
Sbjct: 656 SFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 715

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T + YT++I     +  +  A   F   + +G    I  ++A+I+  C    I  A    
Sbjct: 716 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFF 775

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             M    + PD+     +++   R G       +   M + G+ P
Sbjct: 776 CMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 820



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 142/283 (50%), Gaps = 13/283 (4%)

Query: 21  CKEGRLE---EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM 77
           C   R E   +A  +L +MK   L  +  TYN+L+    N  + ++ +   +E+   G+ 
Sbjct: 176 CAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLY---NLRHTDIMWDVYNEIKASGVP 232

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
               T  +LI  L  + ++ +A   L+E G +   P  +++N L++G+C+ G+   A S 
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSF 292

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
              MI  G+ P + +Y  L+  L     M EA +   +    G+ PDIV +N L +G   
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRI 352

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G I  A+ +++ M    ++PD VTY  L+ G C+ G +EE+ +L ++M  +G+K     
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLK----- 407

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              + +TY  L+  LCK+   D A  LL EM   G+ PD  TY
Sbjct: 408 --LSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTY 448



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 39/235 (16%)

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV-------------- 159
           +++ +++L   Y R      A  +  +M    +Q ++ TY SL++               
Sbjct: 167 NNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEI 226

Query: 160 ------------------LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
                             L +Q+R+ +A         +   P +V FNAL+ G C  G++
Sbjct: 227 KASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSV 286

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A S    M +  + PD  +YN L+HG C  G +EEA    + M+  G++PD +++N  
Sbjct: 287 DVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI- 345

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            L     I GL        A ++++ M+  G+ PD  TY  LI G   +    ES
Sbjct: 346 -LANGFRILGLISG-----AWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEES 394


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 171/324 (52%), Gaps = 16/324 (4%)

Query: 4   RGVQPDSYTYGSFVSGM---CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           RG  PD  TY + + G+   CK G  +EA  + E+MK  G++P  ++Y++L+ G+C  G 
Sbjct: 154 RGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGK 213

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK---MVEADDMLKEMGEKGIVPDSIT 117
           LE +    +EMV QG+ P    +N+LI  L  E K   +  A  +   M  KG   + I+
Sbjct: 214 LEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEIS 273

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y ILINGYC+    ++A +L++EM   G +P + TY++L+  L +  ++ +A++LF    
Sbjct: 274 YTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMK 333

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           A G+  D  ++   +DG C NG +  A  L  E+       D  +Y+ L+ G C+ GKVE
Sbjct: 334 ASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVE 393

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE---ELLREMVSKGIT 294
            A     Q+ + G++P+ +       T N +I G C+ ++ D A    E + +M   G T
Sbjct: 394 IAWEFFKQLSQEGLQPNVV-------TCNIMIHGFCRVEQVDKANILFEKMEKMEENGCT 446

Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
           PD  TY +L+ G    +K  E  N
Sbjct: 447 PDIITYNTLLRGFCESNKLEEVVN 470



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 14/319 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S  + P S ++   + G+ K     +   +  +M+  GL P   T N L +  CN   
Sbjct: 82  MRSHPIPPIS-SFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNR 140

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV---EADDMLKEMGEKGIVPDSIT 117
           +    +    ++++G +P   TYN LI  L    K+    EA ++ +EM  +G++P+ I+
Sbjct: 141 VSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVIS 200

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR---MIEADQLFE 174
           Y+ L++G+C  G  +++  L +EM+ +G+QP ++ +  LI +L K+ +   +  A +LF 
Sbjct: 201 YSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFL 260

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           +  +KG   + + +  LI+G+C    +E A +L  EM ++   P+  TY+TL+ G  + G
Sbjct: 261 SMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTG 320

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           KV +A +L   MK  GI  D          Y   + GLCKN     A EL  E+ S    
Sbjct: 321 KVGDANKLFGVMKASGISVD-------SCIYVIFLDGLCKNGVLFEAMELFNELKSYNFK 373

Query: 295 PDDNTYFSLIEGIASVDKA 313
            D  +Y  LI+G+    K 
Sbjct: 374 LDFESYSRLIDGLCKAGKV 392



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 146/296 (49%), Gaps = 15/296 (5%)

Query: 21  CKEGRLE--EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP 78
           CK G ++  +A    + M  +  +P   ++N L+ G     +    FS  ++M   G+ P
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN---GYCRCGNAKKAF 135
              T N+L + L    ++ E    +  +  +G +PD +TYN LI    G C+ G+  +A 
Sbjct: 124 DLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAK 183

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            + +EM  +G+ P +++Y+SL+       ++ E+ +LF   + +G+ P++V FN LID  
Sbjct: 184 EIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDIL 243

Query: 196 CTNGNI---ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           C  G I     A  L   M       +E++Y  L++G C+  KVEEA  L ++M + G +
Sbjct: 244 CKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKR 303

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           P+         TY+ L+ GL +  +   A +L   M + GI+ D   Y   ++G+ 
Sbjct: 304 PN-------VKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLC 352



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 133/270 (49%), Gaps = 15/270 (5%)

Query: 56  CNKGNLEM--AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           C  GN+++  AF F D M++   +P  S++N L+  L       +   +  +M   G+ P
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEAD 170
           D  T NIL N  C      +  +    ++ +G  P ++TY +LI   + L K     EA 
Sbjct: 124 DLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAK 183

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           ++FE   A+GM+P+++ +++L+ G C  G +E +  L  EM    V P+ V +N L+   
Sbjct: 184 EIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDIL 243

Query: 231 CRQGKV---EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           C++GK+     AR+L   M  +G + + IS       Y  LI G CK  + + A  L  E
Sbjct: 244 CKEGKIGDLSSARKLFLSMPSKGCEHNEIS-------YTILINGYCKIWKVEEAMNLYNE 296

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           M   G  P+  TY +L+ G+    K  +++
Sbjct: 297 MPQVGKRPNVKTYSTLLTGLLQTGKVGDAN 326



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 13/229 (5%)

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           +++A      M     +P   ++N L+ G  +  +  + FSL+++M   G+ P + T   
Sbjct: 71  VIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNI 130

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID---GHCTNGNIERAFSLLKEMD 212
           L   L   NR+ E        L +G +PDIV +N LI    G C  G+ + A  + +EM 
Sbjct: 131 LANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMK 190

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
              + P+ ++Y++L+HG C  GK+EE++RL ++M  +G++P+ + F       N LI  L
Sbjct: 191 AQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQF-------NVLIDIL 243

Query: 273 CKNQE-GDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           CK  + GDL  A +L   M SKG   ++ +Y  LI G   + K  E+ N
Sbjct: 244 CKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMN 292



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 38/252 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G + +  +Y   ++G CK  ++EEA  +  +M + G  P   TY+TL+ G      
Sbjct: 262 MPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTG------ 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                                        LL   K+ +A+ +   M   GI  DS  Y I
Sbjct: 316 -----------------------------LLQTGKVGDANKLFGVMKASGISVDSCIYVI 346

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++G C+ G   +A  L +E+     +    +Y+ LI  L K  ++  A + F+    +G
Sbjct: 347 FLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEG 406

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK---VHPDEVTYNTLMHGRCRQGKVE 237
           + P++V  N +I G C    +++A  L ++M++M+     PD +TYNTL+ G C   K+E
Sbjct: 407 LQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLE 466

Query: 238 EARRLLDQMKRR 249
           E   LL +M +R
Sbjct: 467 EVVNLLHKMFKR 478



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 12/199 (6%)

Query: 126 CRCGNAK--KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           C+ GN    +AF   D M+     P + ++  L+  L+K N   +   L+      G+ P
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL---MHGRCRQGKVEEAR 240
           D+   N L +  C    +    + +  + R    PD VTYNTL   ++G C+ G  +EA+
Sbjct: 124 DLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAK 183

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + ++MK +G+ P+ IS       Y++L+ G C   + + ++ L  EMV +G+ P+   +
Sbjct: 184 EIFEEMKAQGMIPNVIS-------YSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQF 236

Query: 301 FSLIEGIASVDKAAESSNS 319
             LI+ +    K  + S++
Sbjct: 237 NVLIDILCKEGKIGDLSSA 255


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 168/319 (52%), Gaps = 8/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRML-EQMKENGLVPTAVTYNTLIDGYCNKG 59
           M S+   P++  Y + ++G    GR EEA  +L + M   G  P A T+N +IDG C KG
Sbjct: 327 MLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKG 386

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A  F DEMVK+G  P   TY +LI     +    EA  ++  M  KG+  +++ YN
Sbjct: 387 YLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYN 446

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI   C+ G  + A  ++ EM  KG +P + T+ SLI+ L K ++M EA  L+ + L +
Sbjct: 447 CLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLE 506

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++ + V +N LI        I++A  L+ EM       D +TYN L+   C+ G  E+ 
Sbjct: 507 GVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKC 566

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L++QM    I P   S N    + N LI   C+  + + A + LR+M+ +G+TPD  T
Sbjct: 567 LGLIEQMFGEEIFP---SIN----SCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVT 619

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y SLI G+  + +  E+ N
Sbjct: 620 YNSLINGLCKMGRFQEALN 638



 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD++T+   + G+CK+G L  A   L++M + G  P  +TY  LIDG+C +G+
Sbjct: 363 MVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGH 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A    + M  +G+      YN LI  L  + K+ +A  M  EM  KG  PD  T+N 
Sbjct: 423 FEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNS 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+    ++A  L+ +M+ +G+    +TY +LI    +   + +AD+L      +G
Sbjct: 483 LIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRG 542

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D + +N LI   C  G  E+   L+++M   ++ P   + N L++  CR GKV +A 
Sbjct: 543 CPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDAL 602

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + L  M +RG+ PD +       TYN+LI GLCK      A  L   + +KGI PD  TY
Sbjct: 603 QFLRDMIQRGLTPDIV-------TYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTY 655

Query: 301 FSLI 304
            +LI
Sbjct: 656 NTLI 659



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +P+  TY   + G CK+G  EEAS+++  M   GL    V YN LI   C  G 
Sbjct: 398 MVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGK 457

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM  +G  P   T+N LI+ L    KM EA  + ++M  +G++ +++TYN 
Sbjct: 458 IQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNT 517

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + R    ++A  L  EM  +G     +TY  LI  L K     +   L E    + 
Sbjct: 518 LIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEE 577

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P I   N LI+  C  G +  A   L++M +  + PD VTYN+L++G C+ G+ +EA 
Sbjct: 578 IFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEAL 637

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L + ++ +GI PD +       TYN LI   C     + A +LL + VS G  P++ T+
Sbjct: 638 NLFNGLQAKGIHPDAV-------TYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITW 690

Query: 301 FSLI 304
             LI
Sbjct: 691 SILI 694



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 151/317 (47%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG+ P  YT+G  +   C    ++ A  +L  M ++G VP ++ Y  LI        
Sbjct: 191 MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNR 250

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM   G  P   T+N +IH L    ++ EA  +   M  +    D++    
Sbjct: 251 VNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGY 310

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA-DQLFENFLAK 179
           L++G CR G   +A      M+ K   P  + Y +LI       R  EA D L++N +  
Sbjct: 311 LMHGLCRMGKVDEA----RAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIA 366

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PD   FN +IDG C  G +  A   L EM +    P+ +TY  L+ G C+QG  EEA
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEA 426

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            ++++ M  +G+  + +        YN LI  LCK+ +   A ++  EM SKG  PD  T
Sbjct: 427 SKVVNSMSAKGLSLNTVG-------YNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYT 479

Query: 300 YFSLIEGIASVDKAAES 316
           + SLI G+   DK  E+
Sbjct: 480 FNSLIYGLCKNDKMEEA 496



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 144/346 (41%), Gaps = 38/346 (10%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG     + Y   +  +   G  +   ++L+QMK+ G V     +  ++  Y   G    
Sbjct: 88  RGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQ 147

Query: 64  AFSFRDEMVKQGIM---PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           A     +M   G+    PT  +YN+++  L+       A ++  +M  +GI P   T+ +
Sbjct: 148 ATRLLLDM--WGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGV 205

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++  +C       A SL  +M   G  P  + Y  LI  LS+ NR+ EA +L E     G
Sbjct: 206 VMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMG 265

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  FN +I G C  G I  A  L   M       D +    LMHG CR GKV+EAR
Sbjct: 266 CEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEAR 325

Query: 241 RLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQG 271
            +L ++      P+ + +N                             P   T+N +I G
Sbjct: 326 AMLSKIPN----PNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDG 381

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           LCK      A E L EMV KG  P+  TY  LI+G        E+S
Sbjct: 382 LCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEAS 427



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 35/243 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M S+G +PD YT+ S + G+CK  ++EEA  +   M   G++   VTYNTLI  +     
Sbjct: 468 MSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLEL 527

Query: 56  ------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                         C  G  E      ++M  + I P+ ++ N+
Sbjct: 528 IQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNI 587

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+      K+ +A   L++M ++G+ PD +TYN LING C+ G  ++A +L + +  KG
Sbjct: 588 LINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKG 647

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P  +TY +LI     +    +A QL    ++ G +P+ + ++ LI+    N +    F
Sbjct: 648 IHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQF 707

Query: 206 SLL 208
           ++L
Sbjct: 708 TIL 710



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 12/253 (4%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    +++G + +   Y LLI +L  + E KM+  D +LK+M ++G V     + +++  
Sbjct: 81  FEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMI--DKLLKQMKDEGCVFKESLFILIMRY 138

Query: 125 YCRCGNAKKAFSLHDEMIH-KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           Y + G   +A  L  +M      +PT  +Y  ++ +L   N    A  +F + L++G+ P
Sbjct: 139 YGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISP 198

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +  F  ++   C    ++ A SLL++M +    P+ + Y  L+H      +V EA +LL
Sbjct: 199 TVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLL 258

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++M   G +PD         T+N +I GLCK      A +L   M+ +  T D      L
Sbjct: 259 EEMFLMGCEPD-------VQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYL 311

Query: 304 IEGIASVDKAAES 316
           + G+  + K  E+
Sbjct: 312 MHGLCRMGKVDEA 324


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 161/307 (52%), Gaps = 11/307 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++  Q +  +YG+ ++G+CK G    A ++L  +++    P  V Y+ +IDG C    + 
Sbjct: 108 AQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVN 167

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+    EM  + I P   TYN LI    +  +++ A  +L EM  K I PD  T++ILI
Sbjct: 168 EAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILI 227

Query: 123 NGYCRCG-NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +  C+ G NAK+ F     M+  G+ P + +Y  +I  L K  R+ EA  L    L K M
Sbjct: 228 DALCKEGKNAKQIFH---AMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNM 284

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD V +N+LIDG C +G I  A +L+ EM       D VTY +L+   C+   +++A  
Sbjct: 285 VPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATA 344

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L  +MK RGI+       PT  TY ALI GLCK      A+EL + ++ KG   D  TY 
Sbjct: 345 LFMKMKERGIQ-------PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYT 397

Query: 302 SLIEGIA 308
            +I G+ 
Sbjct: 398 VMISGLC 404



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 157/312 (50%), Gaps = 9/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ R  +P+   Y + + G+CK+  + EA  +  +M    + P  +TYNTLI  +C  G 
Sbjct: 141 IEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQ 200

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AFS   EM+ + I P   T+++LI  L  E K   A  +   M + G+ P+  +YNI
Sbjct: 201 LMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNI 258

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+C    +A +L  EM+HK + P  +TY SLI  L K  R+  A  L      +G
Sbjct: 259 MINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRG 318

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+V + +L+D  C N N+++A +L  +M    + P   TY  L+ G C+ G+++ A+
Sbjct: 319 QPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQ 378

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G   D         TY  +I GLCK    D A  +  +M   G  P+  T+
Sbjct: 379 ELFQHLLVKGCCID-------VWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF 431

Query: 301 FSLIEGIASVDK 312
             +I  +   D+
Sbjct: 432 EIIIRSLFEKDE 443



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 161/341 (47%), Gaps = 40/341 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ +  T    ++  C  G++  +  +L ++ + G  P  +T+ TL+ G C KG 
Sbjct: 36  MDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGE 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++    F D++V Q       +Y  L++ L    +   A  +L+ + ++   P+ + Y+ 
Sbjct: 96  VKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSA 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+     +A+ L+ EM  + I P ++TY +LI       +++ A  L    + K 
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKN 215

Query: 181 MLPDIVMFNALIDGHCTNGN---------------------------------IERAFSL 207
           + PD+  F+ LID  C  G                                  ++ A +L
Sbjct: 216 INPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNL 275

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           L+EM    + PD VTYN+L+ G C+ G++  A  L+++M  RG   D +       TY +
Sbjct: 276 LREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVV-------TYTS 328

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           L+  LCKNQ  D A  L  +M  +GI P   TY +LI+G+ 
Sbjct: 329 LLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLC 369



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 148/285 (51%), Gaps = 9/285 (3%)

Query: 34  EQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
           +QM   G+    VT + LI+ +C+ G +  +FS   +++K G  P   T+  L+  L ++
Sbjct: 34  KQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLK 93

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
            ++ +      ++  +    + ++Y  L+NG C+ G  + A  L   +  +  +P ++ Y
Sbjct: 94  GEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMY 153

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           +++I  L K   + EA  L+    A+ + P+++ +N LI   C  G +  AFSLL EM  
Sbjct: 154 SAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMIL 213

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
             ++PD  T++ L+   C++GK   A+++   M + G+       NP   +YN +I GLC
Sbjct: 214 KNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGV-------NPNVYSYNIMINGLC 264

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           K +  D A  LLREM+ K + PD  TY SLI+G+    +   + N
Sbjct: 265 KCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALN 309



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 135/251 (53%), Gaps = 2/251 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD YT+   +  +CKEG+   A ++   M + G+ P   +YN +I+G C    
Sbjct: 211 MILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   EM+ + ++P   TYN LI  L    ++  A +++ EM  +G   D +TY  
Sbjct: 269 VDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTS 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+  N  KA +L  +M  +GIQPTM TYT+LI  L K  R+  A +LF++ L KG
Sbjct: 329 LLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 388

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+  +  +I G C  G  + A ++  +M+     P+ VT+  ++     + + ++A 
Sbjct: 389 CCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAE 448

Query: 241 RLLDQMKRRGI 251
           +LL +M  +G+
Sbjct: 449 KLLHEMIAKGL 459



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 97/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+ TY S + G+CK GR+  A  ++ +M   G     VTY +L+D  C   N
Sbjct: 279 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   +M ++GI PT  TY  LI  L    ++  A ++ + +  KG   D  TY +
Sbjct: 339 LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTV 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G   +A ++  +M   G  P  +T+  +I  L +++   +A++L    +AKG
Sbjct: 399 MISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 458

Query: 181 ML 182
           +L
Sbjct: 459 LL 460



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
             SL  +M  KGI+  ++T + LI       +M  +  L    L  G  P+ + +  L+ 
Sbjct: 29  VISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMK 88

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
           G C  G +++      ++       ++V+Y TL++G C+ G+   A +LL  ++ R  +P
Sbjct: 89  GLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRP 148

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           + +        Y+A+I GLCK++  + A +L  EM ++ I P+  TY +LI
Sbjct: 149 NVV-------MYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLI 192


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+ D   Y + + G+CK+  + +A     +M    + PT VTYNTLI G C  G L+ A 
Sbjct: 205 VRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAI 264

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +M+ + I PT  T+++L+     E K+ EA ++   M +K + P+ +TYN L+NGY
Sbjct: 265 GLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGY 324

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C      KA S+ + M   G+ P + +Y+ +I    K   + EA +LFE    K + PD+
Sbjct: 325 CLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDV 384

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N+LIDG C +G I  A  L+ EM      P+ +TYN+L+   C+   V++A  LL +
Sbjct: 385 VTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTK 444

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +K   I+       P+  TYN LI GLCK+     A+++  +++  G   D  TY ++I+
Sbjct: 445 LKDHNIQ-------PSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIK 497

Query: 306 GIA 308
           G  
Sbjct: 498 GFC 500



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 167/304 (54%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G Q +  +Y + ++G+CK G+ + A  ML ++    +    V YNT+IDG C    +  A
Sbjct: 169 GFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDA 228

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F F  EMV + I PT  TYN LI  L +  ++ +A  +L +M  + I P   T++IL++ 
Sbjct: 229 FDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDA 288

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G  K+A ++   M+ K ++P ++TY SL+      N + +A+ +F      G+ PD
Sbjct: 289 FCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPD 348

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  ++ +I G C    ++ A  L +EM   ++ PD VTYN+L+ G C+ G++  A +L+ 
Sbjct: 349 VHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIG 408

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  RG +P      P  +TYN+L+  LCKN   D A ELL ++    I P   TY  LI
Sbjct: 409 EMHDRG-QP------PNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILI 461

Query: 305 EGIA 308
            G+ 
Sbjct: 462 NGLC 465



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 155/274 (56%), Gaps = 7/274 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ + P   TY + + G+C  G+L++A  +L +M    + PT  T++ L+D +C +G 
Sbjct: 235 MVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGK 294

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    M+K+ + P   TYN L++   +  ++ +A+ +   M + G+ PD  +Y+I
Sbjct: 295 VKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSI 354

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+     +A  L +EM  K I P ++TY SLI  L K  R+  A +L      +G
Sbjct: 355 MISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRG 414

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I+ +N+L+D  C N ++++A  LL ++    + P   TYN L++G C+ G++++A+
Sbjct: 415 QPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQ 474

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           ++ + +   G       +N    TYN +I+G CK
Sbjct: 475 KVFEDVLVNG-------YNIDVYTYNTMIKGFCK 501



 Score =  153 bits (387), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  +  T    ++   + G    +  +   + + G  P A+T  TLI G C KG+
Sbjct: 95  MEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGD 154

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D+++  G      +Y  LI+ L    +   A +ML+ +  K +  D + YN 
Sbjct: 155 IHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNT 214

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+      AF  + EM+ K I PT++TY +LI  L    ++ +A  L    + + 
Sbjct: 215 IIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILEN 274

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +  F+ L+D  C  G ++ A ++   M +  V P+ VTYN+LM+G C   +V +A 
Sbjct: 275 INPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAE 334

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + M + G+ PD  S       Y+ +I G CK +  D A +L  EM  K I PD  TY
Sbjct: 335 SIFNTMAQIGVAPDVHS-------YSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTY 387

Query: 301 FSLIEGIA 308
            SLI+G+ 
Sbjct: 388 NSLIDGLC 395



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 124/231 (53%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P  YT+   V   CKEG+++EA  +   M +  + P  VTYN+L++GYC    +  A 
Sbjct: 275 INPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAE 334

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S  + M + G+ P   +Y+++I      + + EA  + +EM  K I PD +TYN LI+G 
Sbjct: 335 SIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGL 394

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G    A  L  EM  +G  P ++TY SL+  L K + + +A +L        + P +
Sbjct: 395 CKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSV 454

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +N LI+G C +G ++ A  + +++     + D  TYNT++ G C++G V
Sbjct: 455 CTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 150/309 (48%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +G  +  + K         +  QM+ NG+    VT + LI+ +   G+  ++FS 
Sbjct: 67  PSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSV 126

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K+G  P A T   LI  L ++  + +A     ++   G   + ++Y  LING C+
Sbjct: 127 FSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCK 186

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K A  +   +  K ++  ++ Y ++I  + K   + +A   +   +AK + P +V 
Sbjct: 187 VGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVT 246

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI G C  G ++ A  LL +M    ++P   T++ L+   C++GKV+EA+ +   M 
Sbjct: 247 YNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMM 306

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           ++ +KP+ +       TYN+L+ G C   E + AE +   M   G+ PD ++Y  +I G 
Sbjct: 307 KKDVKPNIV-------TYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGF 359

Query: 308 ASVDKAAES 316
             +    E+
Sbjct: 360 CKIKMVDEA 368



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 105/205 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V+P+  TY S ++G C    + +A  +   M + G+ P   +Y+ +I G+C    
Sbjct: 305 MMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKM 364

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM  + I P   TYN LI  L    ++  A  ++ EM ++G  P+ ITYN 
Sbjct: 365 VDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNS 424

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+  +  KA  L  ++    IQP++ TY  LI  L K  R+ +A ++FE+ L  G
Sbjct: 425 LLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNG 484

Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
              D+  +N +I G C  G +   F
Sbjct: 485 YNIDVYTYNTMIKGFCKKGFVIPQF 509



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 7/253 (2%)

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           SF   + ++   P+   +  ++  L+          + ++M   GI  + +T +ILIN +
Sbjct: 55  SFNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCF 114

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + G+   +FS+   ++ KG +P  +T T+LI  L  +  + +A    +  LA G   + 
Sbjct: 115 SQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQ 174

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +  LI+G C  G  + A  +L+ +D   V  D V YNT++ G C+   V +A     +
Sbjct: 175 VSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSE 234

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  + I        PT +TYN LI GLC   +   A  LL +M+ + I P   T+  L++
Sbjct: 235 MVAKRI-------CPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVD 287

Query: 306 GIASVDKAAESSN 318
                 K  E+ N
Sbjct: 288 AFCKEGKVKEAKN 300


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 178/360 (49%), Gaps = 58/360 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD  TY   +  +C   ++E+A  + E+MK NG+VP+  TY  LID +C  G 
Sbjct: 451 MMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGL 510

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  + DEM+ +G  P   TY  LIH  L  ++M  AD++ + M  +G  P+ +TY  
Sbjct: 511 IQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTA 570

Query: 121 LINGYCRCGNAKKAFSLHDEMI---------------HKGIQ-PTMLTYTSLIFVLSKQN 164
           LI+G+C+ G  +KA  ++  M                H   + P ++TY +L+  L K N
Sbjct: 571 LIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKAN 630

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI-----------ERAFS------- 206
           R+ EA +L +  LA G  P+ ++++A+IDG C  G +           ER +S       
Sbjct: 631 RVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYS 690

Query: 207 --------------LLKEMDRM---KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
                         +LK + +M      P+ V Y  ++ G C+ GK +EA +L+ +M+ +
Sbjct: 691 SFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEK 750

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           G        NP  +TY A+I G  K+ + +   EL R+M SKG  P+  TY  LI    S
Sbjct: 751 GC-------NPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCS 803



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 165/325 (50%), Gaps = 29/325 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGR------LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           G QP    Y  F+  +C          L+   +   +M + G+V   V  +      C  
Sbjct: 379 GCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGA 438

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G  + AF    EM+ +G +P  STY+ +I  L    K+ +A  + +EM   GIVP   TY
Sbjct: 439 GKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTY 498

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            ILI+ +C+ G  ++A    DEM+HKG  P ++TYT+LI    K  +M  AD+LFE  L 
Sbjct: 499 TILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLL 558

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLL---------KEMDR-MKVH------PDEVT 222
           +G  P++V + ALIDGHC  G IE+A  +           +MD+  K+       P+ +T
Sbjct: 559 EGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVIT 618

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y  L+ G C+  +V+EA  LLD M   G +P+ I        Y+A+I G CK  +   A+
Sbjct: 619 YGALVDGLCKANRVKEAHELLDTMLAHGCEPNQI-------VYDAVIDGFCKIGKLQDAQ 671

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI 307
           E+  +M  +G +P+  TY S I+ +
Sbjct: 672 EVFTKMSERGYSPNLYTYSSFIDCL 696



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 164/342 (47%), Gaps = 38/342 (11%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  TYG+ V G+CK  R++EA  +L+ M  +G  P  + Y+ +IDG+C  G L+ A   
Sbjct: 614 PNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEV 673

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M ++G  P   TY+  I  L  + ++     +L +M E    P+ + Y  +++G C+
Sbjct: 674 FTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCK 733

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G   +A+ L  +M  KG  P ++TYT++I    K  ++ +  +LF +  +KG  P+ + 
Sbjct: 734 IGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFIT 793

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRM--------------------------------- 214
           +  LI+  C+NG ++ A+ LL EM +                                  
Sbjct: 794 YRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSEN 853

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           +  P +  Y  L+    + G++E A  LL+++      P H   N  +  Y +LI+ L  
Sbjct: 854 ESVPVDSLYRILIDNYIKAGRLEVALDLLEEISS---SPSHAVSN--KYLYASLIENLSH 908

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             + D A EL   M+SK + P+ +    LI+G+  VDK  E+
Sbjct: 909 ASKVDKALELYASMISKNVVPELSILVHLIKGLIKVDKWQEA 950



 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 163/330 (49%), Gaps = 27/330 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  +     +F   +C  G+ ++A +++ +M   G VP   TY+ +I   C+   +E A
Sbjct: 420 GVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKA 479

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           FS  +EM + GI+P+  TY +LI        + +A     EM  KG  P+ +TY  LI+ 
Sbjct: 480 FSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHA 539

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-- 182
           Y +      A  L + M+ +G +P ++TYT+LI    K  ++ +A Q++     +G +  
Sbjct: 540 YLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARM--RGDIES 597

Query: 183 ----------------PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
                           P+++ + AL+DG C    ++ A  LL  M      P+++ Y+ +
Sbjct: 598 SDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAV 657

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           + G C+ GK+++A+ +  +M  RG       ++P   TY++ I  L K+   DL  ++L 
Sbjct: 658 IDGFCKIGKLQDAQEVFTKMSERG-------YSPNLYTYSSFIDCLFKDNRLDLVLKVLS 710

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +M+    TP+   Y  +++G+  + K  E+
Sbjct: 711 KMLENSCTPNVVIYTEMVDGLCKIGKTDEA 740



 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 150/320 (46%), Gaps = 22/320 (6%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+  Y   VSG+C+    EEA  +L +M+ +  +P  VTY  L+ G   KG L      
Sbjct: 277 PDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRI 336

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              M+ +G  P    +N LIH     R    A  + K+M + G  P  + YNI I   C 
Sbjct: 337 LSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCS 396

Query: 128 ---------CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
                        +KA+S   EM+  G+    +  ++    L    +  +A ++    + 
Sbjct: 397 NEEQPSSDILDLVEKAYS---EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMG 453

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           KG +PD   ++ +I   C    +E+AFSL +EM R  + P   TY  L+   C+ G +++
Sbjct: 454 KGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQ 513

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR+  D+M  +G  P+ +       TY ALI    K ++  +A+EL   M+ +G  P+  
Sbjct: 514 ARKWFDEMLHKGCTPNVV-------TYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVV 566

Query: 299 TYFSLIEG---IASVDKAAE 315
           TY +LI+G      ++KA +
Sbjct: 567 TYTALIDGHCKAGQIEKACQ 586



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 4/256 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+ YTY SF+  + K+ RL+   ++L +M EN   P  V Y  ++DG C  G 
Sbjct: 677 MSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGK 736

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+    +M ++G  P   TY  +I       K+ +  ++ ++M  KG  P+ ITY +
Sbjct: 737 TDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRV 796

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G   +A+ L DEM        +L++  +I   S++   I +  L +      
Sbjct: 797 LINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQE--FITSIGLLDELSENE 854

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP--DEVTYNTLMHGRCRQGKVEE 238
            +P   ++  LID +   G +E A  LL+E+     H   ++  Y +L+       KV++
Sbjct: 855 SVPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDK 914

Query: 239 ARRLLDQMKRRGIKPD 254
           A  L   M  + + P+
Sbjct: 915 ALELYASMISKNVVPE 930



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 136/365 (37%), Gaps = 81/365 (22%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK-- 73
            V   C+ G    A   L ++K+ G  P+  TYN LI  +     L+ A+  + EM+   
Sbjct: 182 LVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYA 241

Query: 74  -------------------------------QGIMPTASTYNLLIHELLMERKMVEADDM 102
                                          +  +P    YN ++  L       EA D+
Sbjct: 242 FVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDI 301

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           L  M     +P+ +TY IL++G  R G   +   +   MI +G  P    + SLI    K
Sbjct: 302 LHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCK 361

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN------------------------ 198
                 A +LF+  +  G  P  +++N  I   C+N                        
Sbjct: 362 SRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGV 421

Query: 199 -----------------GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
                            G  ++AF ++ EM      PD+ TY+ ++   C   KVE+A  
Sbjct: 422 VLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFS 481

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L ++MKR GI        P+  TY  LI   CK      A +   EM+ KG TP+  TY 
Sbjct: 482 LFEEMKRNGIV-------PSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYT 534

Query: 302 SLIEG 306
           +LI  
Sbjct: 535 ALIHA 539



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 15/252 (5%)

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           N L+   C  G   MA      +   G  P+ +TYN LI   L   K+  A  + +EM  
Sbjct: 180 NFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLS 239

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
              V D  T +      C+ G  ++AF L DE   +   P  + Y  ++  L + +   E
Sbjct: 240 YAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEA--EDFVPDTVFYNRMVSGLCEASLFEE 297

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  +     +   +P++V +  L+ G    G + R   +L  M     +P+   +N+L+H
Sbjct: 298 AMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIH 357

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG------DLAE 282
             C+      A +L  +M + G +P +       L YN  I  +C N+E       DL E
Sbjct: 358 AYCKSRDYSYAYKLFKKMIKCGCQPGY-------LVYNIFIGSVCSNEEQPSSDILDLVE 410

Query: 283 ELLREMVSKGIT 294
           +   EM+  G+ 
Sbjct: 411 KAYSEMLDLGVV 422



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 10/222 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  P+  TY + + G  K G++E+   +   M   G  P  +TY  LI+  C+ G 
Sbjct: 747 MEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGL 806

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME---RKMVEADDMLKEMGEKGIVPDSIT 117
           L+ A+   DEM KQ   P     ++L H  ++E   ++ + +  +L E+ E   VP    
Sbjct: 807 LDEAYKLLDEM-KQTYWPK----HILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSL 861

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM--LTYTSLIFVLSKQNRMIEADQLFEN 175
           Y ILI+ Y + G  + A  L +E+             Y SLI  LS  +++ +A +L+ +
Sbjct: 862 YRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYAS 921

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
            ++K ++P++ +   LI G       + A  L   + +M +H
Sbjct: 922 MISKNVVPELSILVHLIKGLIKVDKWQEALQLSDSICQMDIH 963


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 169/315 (53%), Gaps = 8/315 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K++G  P    Y   ++ + K+ R+EEA R+ E+MK +  VP   TYN LID  C +G L
Sbjct: 362 KAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA-VPNVPTYNILIDMLCREGKL 420

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A   RD+M + G+ P   T N++I  L   +K+ EA  + + M +K   P+++T++ L
Sbjct: 421 NAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSL 480

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G  +CG    A+SL+++M+  G  P  + YTSLI    K  R  +  ++++  +  G 
Sbjct: 481 IDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGC 540

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD+ + N  +D     G  E+  +L +E++     PD  +Y+ L+HG  + G   E   
Sbjct: 541 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 600

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L   MK +G   D  +       YNA+I G CK+ + + A +LL EM  KG  P   TY 
Sbjct: 601 LFYAMKEQGCVLDTHA-------YNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYG 653

Query: 302 SLIEGIASVDKAAES 316
           S+I+G+A +D+  E+
Sbjct: 654 SVIDGLAKIDRLDEA 668



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 174/352 (49%), Gaps = 42/352 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P++ T+ S + G+ K GR+++A  + E+M + G VP A+ Y +LI  +   G 
Sbjct: 465 MDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGR 524

Query: 61  LEMAFSFRDEMV-----------------------------------KQGIMPTASTYNL 85
            E       EMV                                     G +P A +Y++
Sbjct: 525 KEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 584

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LIH L+      E  ++   M E+G V D+  YN +I+G+C+ G   KA+ L +EM  KG
Sbjct: 585 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 644

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             PT++TY S+I  L+K +R+ EA  LFE   + G+  ++V++++LIDG    G I+ A+
Sbjct: 645 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 704

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +++E+ +  + P+  T+N L+    +  ++ EA      MK     P+ I       TY
Sbjct: 705 LIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQI-------TY 757

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           + LI GLC+ ++ + A    +EM   G+ P+  TY ++I G+A      E+S
Sbjct: 758 SILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEAS 809



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + G  PD+ +Y   + G+ K G   E   +   MKE G V     YN +IDG+C  G 
Sbjct: 570 INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 629

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+   +EM  +G  PT  TY  +I  L    ++ EA  + +E    GI  + + Y+ 
Sbjct: 630 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 689

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G   +A+ + +E++ KG+ P + T+  L+  L K   + EA   F++     
Sbjct: 690 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 749

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ + ++ LI+G C      +AF   +EM ++ + P+ +TY T++ G  + G + EA 
Sbjct: 750 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEAS 809

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  + K  G  PD  S       YNA+I+GL    +   A  L  E   KG      T 
Sbjct: 810 GLFSRFKANGGIPDSAS-------YNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTC 862

Query: 301 FSLIEGI 307
             L++ +
Sbjct: 863 VVLLDAL 869



 Score =  147 bits (370), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 155/304 (50%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G + + + + + +    +EGR++ A  +L++MK N L    V YN  ID +   G 
Sbjct: 221 MQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGK 280

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++M++ F  EM   G+MP   TY  +I  L    ++ EA ++ +++ +   VP +  YN 
Sbjct: 281 VDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNT 340

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GY   G   +A+ L +    KG  P+++ Y  ++  L K+ R+ EA ++FE  + + 
Sbjct: 341 MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEE-MKRD 399

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++  +N LID  C  G +  A  +  +M+R  + P+ +T N ++   C+  K+EEA 
Sbjct: 400 AVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEAC 459

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + M       D     P  +T+++LI GL K    D A  L  +M+  G  P    Y
Sbjct: 460 SIFEGM-------DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVY 512

Query: 301 FSLI 304
            SLI
Sbjct: 513 TSLI 516



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 139/337 (41%), Gaps = 33/337 (9%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
            Y S +  M +    +   R+LE+M  +G  P++     L+        L  AF     M
Sbjct: 127 AYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTM 186

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDML---KEMGEKGIVPDSITYNILINGYCRC 128
            K    P  S Y +LI  L   R   E D ML    +M E G   +   +  LI  + R 
Sbjct: 187 RKFKFRPAFSAYTILIGALSEVR---EPDPMLILFHQMQELGYEVNVHLFTTLIRVFARE 243

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G    A SL DEM    +   ++ Y   I    K  ++  + + F    + G++PD V +
Sbjct: 244 GRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTY 303

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            ++I   C    ++ A  L +++++ +  P    YNT++ G    GK +EA  LL++ K 
Sbjct: 304 TSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKA 363

Query: 249 RGIKPDHISFN---------------------------PTRLTYNALIQGLCKNQEGDLA 281
           +G  P  I++N                           P   TYN LI  LC+  + + A
Sbjct: 364 KGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAA 423

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            E+  +M   G+ P+  T   +I+ +    K  E+ +
Sbjct: 424 LEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACS 460



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ P+ YT+   +  + K   + EA    + MK+    P  +TY+ LI+G C       
Sbjct: 713 KGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNK 772

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F  EM K G+ P   TY  +I  L     ++EA  +       G +PDS +YN +I 
Sbjct: 773 AFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIE 832

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G      A  A++L +E   KG      T   L+  L K   + +A
Sbjct: 833 GLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 878


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 169/315 (53%), Gaps = 8/315 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K++G  P    Y   ++ + K+ R+EEA R+ E+MK +  VP   TYN LID  C +G L
Sbjct: 117 KAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA-VPNVPTYNILIDMLCREGKL 175

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A   RD+M + G+ P   T N++I  L   +K+ EA  + + M +K   P+++T++ L
Sbjct: 176 NAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSL 235

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G  +CG    A+SL+++M+  G  P  + YTSLI    K  R  +  ++++  +  G 
Sbjct: 236 IDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGC 295

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD+ + N  +D     G  E+  +L +E++     PD  +Y+ L+HG  + G   E   
Sbjct: 296 SPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYE 355

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L   MK +G   D  +       YNA+I G CK+ + + A +LL EM  KG  P   TY 
Sbjct: 356 LFYAMKEQGCVLDTHA-------YNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYG 408

Query: 302 SLIEGIASVDKAAES 316
           S+I+G+A +D+  E+
Sbjct: 409 SVIDGLAKIDRLDEA 423



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 174/352 (49%), Gaps = 42/352 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P++ T+ S + G+ K GR+++A  + E+M + G VP A+ Y +LI  +   G 
Sbjct: 220 MDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGR 279

Query: 61  LEMAFSFRDEMV-----------------------------------KQGIMPTASTYNL 85
            E       EMV                                     G +P A +Y++
Sbjct: 280 KEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 339

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LIH L+      E  ++   M E+G V D+  YN +I+G+C+ G   KA+ L +EM  KG
Sbjct: 340 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 399

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             PT++TY S+I  L+K +R+ EA  LFE   + G+  ++V++++LIDG    G I+ A+
Sbjct: 400 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 459

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +++E+ +  + P+  T+N L+    +  ++ EA      MK     P+ I       TY
Sbjct: 460 LIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQI-------TY 512

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           + LI GLC+ ++ + A    +EM   G+ P+  TY ++I G+A      E+S
Sbjct: 513 SILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEAS 564



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 8/301 (2%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
           F   +CK  RL+EA  + EQ+++N  VP A  YNT+I GY + G  + A+   +    +G
Sbjct: 61  FPWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG 120

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
            +P+   YN ++  L  +R++ EA  + +EM ++  VP+  TYNILI+  CR G    A 
Sbjct: 121 SIPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAAL 179

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            + D+M   G+ P +LT   +I  L K  ++ EA  +FE    K   P+ V F++LIDG 
Sbjct: 180 EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 239

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
              G ++ A+SL ++M      P  + Y +L+    + G+ E+  ++  +M   G  PD 
Sbjct: 240 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL 299

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
              N    TY   +  + K  E +    L RE+ + G  PD  +Y  LI G+     A E
Sbjct: 300 TLIN----TY---MDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANE 352

Query: 316 S 316
           +
Sbjct: 353 T 353



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + + G  PD+ +Y   + G+ K G   E   +   MKE G V     YN +IDG+C  G 
Sbjct: 325 INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGK 384

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+   +EM  +G  PT  TY  +I  L    ++ EA  + +E    GI  + + Y+ 
Sbjct: 385 VNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 444

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G   +A+ + +E++ KG+ P + T+  L+  L K   + EA   F++     
Sbjct: 445 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 504

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ + ++ LI+G C      +AF   +EM ++ + P+ +TY T++ G  + G + EA 
Sbjct: 505 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEAS 564

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  + K  G  PD  S       YNA+I+GL    +   A  L  E   KG      T 
Sbjct: 565 GLFSRFKANGGIPDSAS-------YNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTC 617

Query: 301 FSLIEGI 307
             L++ +
Sbjct: 618 VVLLDAL 624



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY----- 125
           M   G  P+++    L+   +  RK+ EA D+++ M +    P    Y ILI        
Sbjct: 1   MSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLL 60

Query: 126 -----CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
                C+     +A  L +++      P    Y ++I       +  EA  L E   AKG
Sbjct: 61  FPWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG 120

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P ++ +N ++        +E A  + +EM R  V P+  TYN L+   CR+GK+  A 
Sbjct: 121 SIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAAL 179

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + D M+R G+ P+        LT N +I  LCK Q+ + A  +   M  K  TP+  T+
Sbjct: 180 EIRDDMERAGLFPN-------VLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTF 232

Query: 301 FSLIEGIASVDKAAES 316
            SLI+G+    +  ++
Sbjct: 233 SSLIDGLGKCGRVDDA 248



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 75/166 (45%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ P+ YT+   +  + K   + EA    + MK+    P  +TY+ LI+G C       
Sbjct: 468 KGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNK 527

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F  EM K G+ P   TY  +I  L     ++EA  +       G +PDS +YN +I 
Sbjct: 528 AFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIE 587

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G      A  A++L +E   KG      T   L+  L K   + +A
Sbjct: 588 GLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 633


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 175/349 (50%), Gaps = 31/349 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++    ++ + V G+CK+G +  A  +++++   G  P+ +TYNTL++GY    +
Sbjct: 179 MVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKD 238

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +         M K  +    +TY +LI       K+ EA+ +  EM +KGI PD   Y  
Sbjct: 239 VGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTS 298

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN  C+ GN K+AF L DEM  + + P   TY +LI    K   M  A+ +  +  +KG
Sbjct: 299 IINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKG 358

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  + V+FN L+DG+C  G I+ A  L   M +     D  T N +  G CR  + EEA+
Sbjct: 359 VDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAK 418

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           RLL  M+ RG+ P+ +SF+                            P+ +TYNA I+  
Sbjct: 419 RLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERY 478

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSN 318
           CK  + + A +L+ EM  +G+ PD  TY SLI+G     +VD+A E  N
Sbjct: 479 CKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFN 527



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 162/310 (52%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++PD Y Y S ++  CK G ++ A  + ++M E  LVP A TY  LI+G C  G 
Sbjct: 284 MLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGE 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M  +G+      +N L+     +  + EA  +   M +KG   D+ T NI
Sbjct: 344 MKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNI 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           + +G+CR    ++A  L   M  +G+ P +++++ LI +  K+    EA +LF+    KG
Sbjct: 404 IASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +NA I+ +C  G +E A+ L+ EM    + PD  TY +L+ G    G V+ A 
Sbjct: 464 KAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRAL 523

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M + G+       N   +TY  +I GL K+   D A +L  EM  +GI PDD  Y
Sbjct: 524 ELFNEMPQLGL-------NRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIY 576

Query: 301 FSLIEGIASV 310
            SLI  +  V
Sbjct: 577 SSLIASLHKV 586


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L   
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG++P+ +T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPDD-------RTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y     ++   + G L +A       +E+ L     T   +++      
Sbjct: 62  LETKGTQRSDIYVLSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G  ++G +++A
Sbjct: 242 GLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 HDLIDEMSMKGLKPD-------KFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 137/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GL+P  VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 263 VDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +   GDL E
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIR--LGDLNE 195

Query: 283 --ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
              L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 196 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 232


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 172/316 (54%), Gaps = 9/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + PD   + + V  +CKEG++ EA  +++ M   G+ P  VTYN L+DG+C +  
Sbjct: 270 MINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE 329

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D MV  G  P   +YN LI+     ++M +A  + +EM +K ++P+++TYN 
Sbjct: 330 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 389

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C  G  + A +L  EM+  G  P + TY  L+  L K++ + EA  L +      
Sbjct: 390 LMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN 448

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M PDI ++  +IDG C  G +E A  +   +    + P+  TY  +++G CR+G ++EA 
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEAN 508

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  +M   G  PD         TYN + QGL +N+E   A +LL+EM+++G + D +T 
Sbjct: 509 KLFMEMDGNGCSPD-------GCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTT 561

Query: 301 FSLIEGIASVDKAAES 316
             L+E +   DK  +S
Sbjct: 562 TLLVEMLCD-DKLDQS 576



 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+  TYG+ ++G+CK G    A R+L  M++    P  V Y ++ID  C    
Sbjct: 165 MIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ 224

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITY 118
           +  AF+   +MV QGI P   TY  LIH L  L E K V    +L +M    I+PD + +
Sbjct: 225 VTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT--LLNQMINSKIMPDVVIF 282

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + +++  C+ G   +A  + D MI +G++P ++TY +L+     Q+ M EA ++F+  + 
Sbjct: 283 STVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVH 342

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G  P+++ +N LI+G+C    +++A  L +EM + ++ P+ VTYNTLMH  C  G++++
Sbjct: 343 NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQD 401

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L  +M   G  PD         TY  L+  LCK    D A  LL+ +    + PD  
Sbjct: 402 AIALFHEMVAHGQIPD-------LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQ 454

Query: 299 TYFSLIEGIA 308
            Y  +I+G+ 
Sbjct: 455 IYTIVIDGMC 464



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 149/305 (48%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD YT    ++  C   RL  A  +L ++ + G  P   T+ TLI G C +G 
Sbjct: 95  MDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGK 154

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M+ +G  P   TY  LI+ L        A  +L+ M +    PD + Y  
Sbjct: 155 IGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTS 214

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +AF+L  +M+ +GI P + TYTSLI  L           L    +   
Sbjct: 215 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 274

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+V+F+ ++D  C  G I  A  ++  M    V P+ VTYN LM G C Q +++EA 
Sbjct: 275 IMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAV 334

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D M   G  P+ IS       YN LI G CK Q  D A  L  EM  K + P+  TY
Sbjct: 335 KVFDTMVHNGYAPNVIS-------YNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTY 387

Query: 301 FSLIE 305
            +L+ 
Sbjct: 388 NTLMH 392



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 158/310 (50%), Gaps = 10/310 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P +  +   ++ + K  +      +  QM   G+ P   T N LI+ +C+   L  AFS 
Sbjct: 67  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSV 126

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P  +T+  LI  L +E K+ +A  +  +M  +G  P+ +TY  LING C+
Sbjct: 127 LAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 186

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            GN   A  L   M     QP ++ YTS+I  L K  ++ EA  LF   + +G+ PDI  
Sbjct: 187 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT 246

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + +LI   C     +   +LL +M   K+ PD V ++T++   C++GK+ EA  ++D M 
Sbjct: 247 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 306

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG- 306
            RG++P+ +       TYNAL+ G C   E D A ++   MV  G  P+  +Y +LI G 
Sbjct: 307 IRGVEPNVV-------TYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGY 359

Query: 307 --IASVDKAA 314
             I  +DKA 
Sbjct: 360 CKIQRMDKAT 369



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 7/275 (2%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           +++++N       N   L+ A S  + M+     P+   +N L+  +   ++      + 
Sbjct: 33  SSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLS 92

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            +M   GI PD  T NILIN +C       AFS+  +++  G QP   T+T+LI  L  +
Sbjct: 93  NQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVE 152

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            ++ +A  LF+  + +G  P++V +  LI+G C  GN   A  LL+ M++    PD V Y
Sbjct: 153 GKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVY 212

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
            +++   C+  +V EA  L  +M  +GI PD         TY +LI  LC   E      
Sbjct: 213 TSIIDSLCKDRQVTEAFNLFSKMVGQGISPD-------IFTYTSLIHSLCNLCEWKHVTT 265

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LL +M++  I PD   + ++++ +    K  E+ +
Sbjct: 266 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHD 300



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 1/246 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+  +Y + ++G CK  R+++A+ + E+M +  L+P  VTYNTL+   C+ G 
Sbjct: 340 MVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGR 398

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   EMV  G +P  +TY +L+  L  +  + EA  +LK +    + PD   Y I
Sbjct: 399 LQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTI 458

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G CR G  + A  +   +  KG++P + TYT +I  L ++  + EA++LF      G
Sbjct: 459 VIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG 518

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +N +  G   N    RA  LL+EM       D  T   L+   C     +  +
Sbjct: 519 CSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVK 578

Query: 241 RLLDQM 246
           ++L + 
Sbjct: 579 QILSEF 584



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 82/177 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  TY   +  +CK+  L+EA  +L+ ++ + + P    Y  +IDG C  G 
Sbjct: 409 MVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGE 468

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A      +  +G+ P   TY ++I+ L     + EA+ +  EM   G  PD  TYN 
Sbjct: 469 LEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNT 528

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  G  +   A +A  L  EM+ +G    + T T L+ +L          Q+   F+
Sbjct: 529 ITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSEFV 585


>gi|255660996|gb|ACU25667.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 376

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS T+G  V G CK G + ++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSGFVEDSITFGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGEMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 151/290 (52%), Gaps = 8/290 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++  + + P +V YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVLSKVSPDSVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M + G V DSIT+ IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITFGILVHGFCKNGYINKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  + +A  +    +  G  P+  ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+       NP
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
             +TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV
Sbjct: 233 GVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSV 282



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 156/316 (49%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +  S ++   + G+   G+++E   + E MK++G V  ++T+  L+ G+C  G 
Sbjct: 51  MGSEGNRSVS-SFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITFGILVHGFCKNGY 109

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  +    +   ++G +  A  Y+ +I+ L  E  + +A  +L  M + G  P++  YN 
Sbjct: 110 INKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNT 169

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING       + A  +  EM      PT++TY +LI  L K     EA  L +  L KG
Sbjct: 170 LINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG 229

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ ++ L+ G C +  +ERA  L  ++      PD   +N L+HG C  G+++ A 
Sbjct: 230 LNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGEMQLAL 289

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M R    P+ +S       +N L++G  K+ +   A  +   ++  G+ PD  +Y
Sbjct: 290 SLYFDMNRWKCAPNLVS-------HNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342

Query: 301 FSLIEGIASVDKAAES 316
              ++G+ S ++ +++
Sbjct: 343 NITLKGLCSCNRISDA 358



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGEMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+    + PDS+ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVLSKVSPDSVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + F  L+ G C NG I ++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKKSGFVEDSITFGILVHGFCKNGYINKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  +++A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 172/345 (49%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ +Y   + G+ K G+L+E+ ++L +M   G  P+   Y++L+        
Sbjct: 71  MVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARR 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  DEM++ G  P    +  LI  L    K+ +A +  K+M + G  P+   YN+
Sbjct: 131 VDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNV 190

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G  ++A +L  EM      P ++TY +L+  + K  R+ E  +LFE   A G
Sbjct: 191 LLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAG 250

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P+++ F+ LI G C  G +E+A  +   M      P++ TY TL+ G CR  KV +AR
Sbjct: 251 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAR 310

Query: 241 RLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQG 271
            L ++M +  I PD +++N                             PT +T+N LI G
Sbjct: 311 ELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDG 370

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            CK  +   A EL+ EM +KG+  D  TY  LI G++   K  E+
Sbjct: 371 FCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEA 415



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 162/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + +  + +TY S +  + KE + EE+ ++LE+M   G  P    +N ++ G+    N
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      MV+ G  P   +Y++LIH L    K+ E+  +L EM  +G  P    Y+ 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+    +      A SL DEMI  G  P  L +  LI  L +  ++ +A + F+     G
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++ ++N L+ G C++G +E+A +L  EM      PD VTYNTL+   C+  +VEE  
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L + M+  G       + P  +T++ LI GLC+  E + A E+   M+  G  P+  TY
Sbjct: 241 KLFEAMRAAG-------YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTY 293

Query: 301 FSLIEGIASVDKAAES 316
            +LI G+   +K  ++
Sbjct: 294 TTLISGLCRAEKVIQA 309



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QP+   Y   + G+C  G+LE+A+ +  +MK +   P  VTYNTL+D  C    
Sbjct: 176 MPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARR 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      + M   G +P   T++ LIH L    ++ +A ++   M E G  P+  TY  
Sbjct: 236 VEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTT 295

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-K 179
           LI+G CR     +A  L ++M    I P  + Y SLI    K+  M EA++L+       
Sbjct: 296 LISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGA 355

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P IV FN LIDG C  G + RA  L+ EM    +  D  TY  L+ G  R  K++EA
Sbjct: 356 GLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEA 415

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +  QM+ +    D +S         + + GLCK    D A  +       G  P+  T
Sbjct: 416 LEVYKQMREKKFLLDPVSC-------VSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPET 468

Query: 300 YFSLIEGIASVDKAAES 316
           +  L E +  + +  ++
Sbjct: 469 FRILSESLIKLGRVEDA 485



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 136/287 (47%), Gaps = 36/287 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS    PD  TY + +  +CK  R+EE  ++ E M+  G VP  +T++TLI G C  G 
Sbjct: 211 MKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGE 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI---- 116
           LE A      M++ G  P   TY  LI  L    K+++A ++ ++M +  I PD++    
Sbjct: 271 LEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 330

Query: 117 --------------------------------TYNILINGYCRCGNAKKAFSLHDEMIHK 144
                                           T+N LI+G+C+ G   +A  L  EM  K
Sbjct: 331 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 390

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+     TY  LI  LS+  ++ EA ++++    K  L D V   + + G C  GNI++A
Sbjct: 391 GLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 450

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           +++ +   +    P+  T+  L     + G+VE+A++L++  K R I
Sbjct: 451 YAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDI 497



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%)

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           K +  ++  ++++I         E ++ +L+EM     +PD   +N +M G  R   +E+
Sbjct: 4   KNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEK 63

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR +   M   G KPD++S       Y+ LI GL K  + D + ++L EMV +G TP   
Sbjct: 64  AREVYQHMVESGYKPDNVS-------YHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQ 116

Query: 299 TYFSLIEGIASVDKAAESSN 318
            Y SL+  +A   +   +S+
Sbjct: 117 AYSSLVRALAKARRVDHASS 136


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 166/313 (53%), Gaps = 8/313 (2%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G+ P+   Y S +SG+CK G +++A  +LE+M +NG  P   T+ +LI G C KG  E A
Sbjct: 896  GLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERA 955

Query: 65   FSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
            F    ++++     P   TY  +I     E K+  A+ + + M E+G+VP++ TY  LI+
Sbjct: 956  FRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 1015

Query: 124  GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            G+C+ GN  KA+ L + M ++G  P   TY S++  L K+ R  EA +L        +  
Sbjct: 1016 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEA 1075

Query: 184  DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            D V +  LI   C   ++ +A   L +M ++   PD   Y TL+   CRQ  ++++ +L 
Sbjct: 1076 DGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLF 1135

Query: 244  DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            D++ + G+ P       T+ TY ++I G C+ ++  LA +  ++M   G  PD  +Y +L
Sbjct: 1136 DEVIKLGLAP-------TKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGAL 1188

Query: 304  IEGIASVDKAAES 316
            I G+    +  E+
Sbjct: 1189 ISGLCKESRLDEA 1201



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 8/309 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M +RGV PDS TY   + G C+ G + EA R + +M E G V    T   +I  +C K  
Sbjct: 822  MSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSL 881

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  A  F  ++ K G+ P    Y+ +I  L     + +A ++L+EM + G  P+  T+  
Sbjct: 882  VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 941

Query: 121  LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G C+ G  ++AF L  ++I     +P + TYT++I    K+ ++  A+ LFE    +
Sbjct: 942  LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 1001

Query: 180  GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            G++P+   +  LIDGHC  GN  +A+ L++ M      P+  TYN+++ G C++G+ EEA
Sbjct: 1002 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEA 1061

Query: 240  RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +LL+   +  I+ D +       TY  LI   CK  + + A   L +M   G  PD + 
Sbjct: 1062 FKLLNTGFQNQIEADGV-------TYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHL 1114

Query: 300  YFSLIEGIA 308
            Y +LI    
Sbjct: 1115 YTTLIAAFC 1123



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 152/291 (52%), Gaps = 7/291 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            ++S   +P+ +TY + +SG CKE +L  A  + E+MKE GLVP   TY TLIDG+C  GN
Sbjct: 963  IRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGN 1022

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               A+   + M  +G  P   TYN ++  L    +  EA  +L    +  I  D +TY I
Sbjct: 1023 FSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTI 1082

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+  C+  +  +A    ++M   G QP +  YT+LI    +QN M ++++LF+  +  G
Sbjct: 1083 LISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLG 1142

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + P    + ++I G+C    +  A    ++M      PD ++Y  L+ G C++ +++EAR
Sbjct: 1143 LAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEAR 1202

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
            +L D M  +G+ P  +    TR+T   L    CK ++   A  +L  +  K
Sbjct: 1203 QLYDTMIDKGLSPCEV----TRVT---LTYEYCKTEDFASAMVILERLNKK 1246



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 8/304 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKG 59
            M   G +P+ YT+ S + G+CK+G  E A R+ L+ ++ +   P   TY  +I GYC + 
Sbjct: 927  MVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEE 986

Query: 60   NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             L  A    + M +QG++P  +TY  LI          +A ++++ M  +G  P++ TYN
Sbjct: 987  KLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYN 1046

Query: 120  ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
             +++G C+ G A++AF L +      I+   +TYT LI    K+  M +A          
Sbjct: 1047 SIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKV 1106

Query: 180  GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            G  PDI ++  LI   C    ++ +  L  E+ ++ + P + TY +++ G CR+ KV  A
Sbjct: 1107 GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLA 1166

Query: 240  RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +   +M   G  PD IS       Y ALI GLCK    D A +L   M+ KG++P + T
Sbjct: 1167 VKFFQKMSDHGCAPDSIS-------YGALISGLCKESRLDEARQLYDTMIDKGLSPCEVT 1219

Query: 300  YFSL 303
              +L
Sbjct: 1220 RVTL 1223



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 148/294 (50%), Gaps = 8/294 (2%)

Query: 24   GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
            G+L+EA  M+  M+  GLV T    N +I        +E A +  DEM  +G+ P + TY
Sbjct: 775  GKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTY 834

Query: 84   NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
              +I        ++EAD  + EM E+G V D+ T  ++I  +C      +A     ++  
Sbjct: 835  KYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTK 894

Query: 144  KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
             G+ P ++ Y+S+I  L K+  + +A +L E  +  G  P++    +LI G C  G  ER
Sbjct: 895  MGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTER 954

Query: 204  AFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            AF L  ++ R   + P+  TY  ++ G C++ K+  A  L ++MK +G+ P+        
Sbjct: 955  AFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPN-------T 1007

Query: 263  LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             TY  LI G CK      A EL+  M ++G  P+  TY S+++G+    +A E+
Sbjct: 1008 NTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEA 1061



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G  PDS +YG+ +SG+CKE RL+EA ++ + M + GL P  VT  TL   YC   +
Sbjct: 1173 MSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTED 1232

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               A    + + K+  + T  T   LI +L  E+K+  A     ++ +K +  D +T   
Sbjct: 1233 FASAMVILERLNKKLWIRTVHT---LIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAA 1289

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGI 146
              N  C   N     S   E I KGI
Sbjct: 1290 F-NTACIESNKYALVSDLSERISKGI 1314


>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 376

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 161/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L    K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCPPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC  +    A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCKRISDAILFLHDAVTKKIV 371



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKELVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+ + Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCKRISDAILFLHDAVTKKIVLTKIT 376



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKELVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHV--------YNTLINGLAGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +    P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYN 220


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 161/291 (55%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   G+L   
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+ +  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +  + KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 175/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A+ LF+  L K
Sbjct: 176 TLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMIMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ + P+  TY + +  +C+EG + +A R+ + MKE G+ P   TYN L+ G+C + +
Sbjct: 212 MVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDD 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     E++K G+ P A  +  LI      ++  EA  M  EM   G+ P    YN 
Sbjct: 272 VNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNS 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G  R GNA++A +L+ EM   G+ P   T + ++  L    +M  AD+  +     G
Sbjct: 332 LMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDG 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   +NALID +C  GN+E A +    M  + + P+ V+Y++L+ G  ++GK++ A 
Sbjct: 392 VNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAM 451

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M  +GI+P+ +       TY ALI G  KN   D A  L +EM+  GI+P+  T 
Sbjct: 452 AIYTEMVAKGIEPNVV-------TYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITV 504

Query: 301 FSLIEGIASVDKAAES 316
             L++G+   ++  E+
Sbjct: 505 SVLVDGLCRENRVQEA 520



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 166/314 (52%), Gaps = 14/314 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P++  + + + G CK  R  EA  M  +M   G+ PT   YN+L+DG    GN + A
Sbjct: 286 GLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEA 345

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EM + G+ P   T ++++  L    +M  AD  L+ + E G+  ++  YN LI+ 
Sbjct: 346 LALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDE 405

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YCR GN ++A +    M   GI+P +++Y+SLI   SK+ +M  A  ++   +AKG+ P+
Sbjct: 406 YCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPN 465

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V + ALI GH  NG I+ AF L KEM    + P+ +T + L+ G CR+ +V+EA R + 
Sbjct: 466 VVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFV- 524

Query: 245 QMKRRGIKPD--HISFN----------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
            M+  G+K    H  F+          P  + Y  LI GL  + +   A +L   M   G
Sbjct: 525 -MEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSG 583

Query: 293 ITPDDNTYFSLIEG 306
           + PD  TY  LI G
Sbjct: 584 MIPDSFTYTLLIRG 597



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 28/322 (8%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
           + + G+ K  R   A  + ++M   GLVP+ VTYNTLI+    +G +  A    D+MV Q
Sbjct: 156 AVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQ 215

Query: 75  GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
            I P   TY  +I  L  E  + +A+ +   M E G+ P+  TYN+L++G+C+  +   A
Sbjct: 216 QIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSA 275

Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
             L+ E++  G+ P  + +T+LI    K  R  EA  +F      G+ P + ++N+L+DG
Sbjct: 276 VVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDG 335

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
              +GN + A +L +EM R+ + PDE T + ++ G C  G++  A R L  ++  G+  +
Sbjct: 336 AFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLN 395

Query: 255 HISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLR 286
             ++N                            P  ++Y++LI G  K  +  +A  +  
Sbjct: 396 AAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYT 455

Query: 287 EMVSKGITPDDNTYFSLIEGIA 308
           EMV+KGI P+  TY +LI G A
Sbjct: 456 EMVAKGIEPNVVTYTALIHGHA 477



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/270 (34%), Positives = 133/270 (49%), Gaps = 17/270 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD +T    V G+C  G++  A R L+ ++E+G+   A  YN LID YC  GN
Sbjct: 352 MTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGN 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +    M + GI P   +Y+ LI       KM  A  +  EM  KGI P+ +TY  
Sbjct: 412 LEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTA 471

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA----------- 169
           LI+G+ + G    AF LH EMI  GI P  +T + L+  L ++NR+ EA           
Sbjct: 472 LIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLK 531

Query: 170 ----DQLFENFLAK--GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
                 +F NF  +   ++P+ V++  LI G   +G    A  L   M +  + PD  TY
Sbjct: 532 CSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTY 591

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             L+ G+C  G V  A  L   M + G+KP
Sbjct: 592 TLLIRGQCMLGYVLNAMMLYADMMKIGVKP 621



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 140/292 (47%), Gaps = 10/292 (3%)

Query: 14  GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73
           G  V  + + G L+EA  +  +++    +P     N ++DG         A+   DEM++
Sbjct: 123 GVLVIALSQMGLLDEALYVFRRLRT---LPALPACNAVLDGLVKARRPGCAWELFDEMLR 179

Query: 74  QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
           +G++P+  TYN LI+    +  + +A ++  +M  + I P+ +TY  +I   C  G    
Sbjct: 180 RGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGD 239

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           A  L D M   G+QP   TY  L+    +++ +  A  L++  L  G+ P+ V+F  LID
Sbjct: 240 AERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLID 299

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
           G C       A  +  EM R  V P    YN+LM G  R G  +EA  L  +M R G+ P
Sbjct: 300 GFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCP 359

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           D         T + +++GLC   +  +A+  L+ +   G+  +   Y +LI+
Sbjct: 360 DE-------FTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALID 404



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 17/166 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G++P+  TY + + G  K G ++ A R+ ++M ENG+ P A+T + L+DG C +  
Sbjct: 457 MVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRENR 516

Query: 61  LEMAFSFRDE-----------------MVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           ++ A  F  E                 + ++ ++P +  Y  LI+ L ++ +  EA  + 
Sbjct: 517 VQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLF 576

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
             M + G++PDS TY +LI G C  G    A  L+ +M+  G++PT
Sbjct: 577 SYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKPT 622


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 174/347 (50%), Gaps = 33/347 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P   TY   + G+CK   L +A ++ EQM + G VP  +TY TLIDG+     
Sbjct: 169 MSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK 228

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M+ +G  PTA TY  ++H       + EA +++ +M E+G  P    +  
Sbjct: 229 MDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTS 288

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ Y   G A++A+ +  EM  +G  P ++ YTSLI +L    R+ EA  +F++ + KG
Sbjct: 289 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 348

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +  +I      GN+E A  +L+ M +  V PD   YN+LM G  +  +V++A 
Sbjct: 349 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408

Query: 241 RLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQG 271
            + D+M   GIKP+ ++FN                             PT ++Y  LI G
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDG 468

Query: 272 LCKNQEGDLAEELL--REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L K   G ++E  L  +EM+ +GI P+ +TY SLI  +A   +  E+
Sbjct: 469 LGK--AGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEA 513



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 165/342 (48%), Gaps = 29/342 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G +P + TYGS V G CK   + EA  ++ QM+E G  P    + +L+  Y +KG 
Sbjct: 239 MLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGR 298

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A+    EM  +G  P    Y  LI  L    ++ EA  +   M EKG  PD++TY  
Sbjct: 299 AEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGT 358

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  + + GN + A  + + M   G+ P    Y SL+    K  R+ +A  +++  +A G
Sbjct: 359 IIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASG 418

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           + P+ V FN L+ G   +G  +RAFSL KEM ++ +V P  V+Y  L+ G  + G+V EA
Sbjct: 419 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEA 478

Query: 240 RRLLDQMKRRGIKPD----------------------------HISFNPTRLTYNALIQG 271
                +M  RGI P+                             +  NP    Y+ALI G
Sbjct: 479 FLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 538

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           L  +   D A ++ +EM+ +G  P++ TY  L  G  +  +A
Sbjct: 539 LIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 580



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 159/317 (50%), Gaps = 11/317 (3%)

Query: 4   RGVQP----DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           R V P    D  +Y + + G+    R++EA  + E++K  G  P  V Y  +IDG    G
Sbjct: 98  RAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAG 157

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +E      +EM     +PT +TY ++I  L   + + +A  + ++M +KG VPD+ITY 
Sbjct: 158 RIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYT 217

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G+ +     +A  L D M+ KG +PT +TY S++    K + + EA ++      +
Sbjct: 218 TLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRER 277

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P + +F +L+  + + G  E A+ +L EM      PD + Y +L+      G+V EA
Sbjct: 278 GCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEA 337

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R + D M  +G  PD        LTY  +IQ   K    + A E+L  M   G+ PD   
Sbjct: 338 RHVFDSMIEKGCAPDA-------LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFA 390

Query: 300 YFSLIEGIASVDKAAES 316
           Y SL++G   +++  ++
Sbjct: 391 YNSLMDGYVKLERVDQA 407



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 166/345 (48%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+ G  P+   Y + + G+ K GR+E+  +  E+M  +  VPT  TY  +IDG C    
Sbjct: 134 LKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQM 193

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    ++MV++G +P   TY  LI       KM EA  +L  M  KG  P ++TY  
Sbjct: 194 LPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGS 253

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+C+     +A  +  +M  +G +P +  +TSL+     + R  EA Q+     A+G
Sbjct: 254 IVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARG 313

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++++ +LID   + G +  A  +   M      PD +TY T++    + G VE A 
Sbjct: 314 CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAG 373

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +L+ M + G+ PD  ++N                            P  +T+N L+ GL
Sbjct: 374 EILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGL 433

Query: 273 CKNQEGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAAES 316
            K+ + D A  L +EM+ K  + P   +Y  LI+G+    + +E+
Sbjct: 434 FKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEA 478



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 152/320 (47%), Gaps = 19/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD   + + + G CK G+ +   ++L Q  +    P    Y ++I GYC  G+
Sbjct: 33  MIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKR-FRPDVFLYTSVIHGYCKAGD 91

Query: 61  LEMAFSFRDEMVKQGIMPTAS----TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           L+  + FR       + P AS    +Y  +I  L   +++ EA ++ +E+   G  P+ +
Sbjct: 92  LDTGY-FR------AVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVV 144

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            Y  +I+G  + G  +      +EM      PT  TYT +I  L K   + +A ++FE  
Sbjct: 145 AYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQM 204

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           + KG +PD + +  LIDG      ++ A  LL  M      P  VTY +++HG C+   +
Sbjct: 205 VQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMI 264

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA+ ++ QM+ RG +P    F        +L+         + A ++L EM ++G  PD
Sbjct: 265 NEAKEVIAQMRERGCEPGLFIF-------TSLLSYYLSKGRAEEAYQVLTEMTARGCAPD 317

Query: 297 DNTYFSLIEGIASVDKAAES 316
              Y SLI+ + S  +  E+
Sbjct: 318 VILYTSLIDLLFSTGRVPEA 337



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 1/177 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP-TAVTYNTLIDGYCNKG 59
           M + G++P++ T+   + G+ K+G+ + A  + ++M E   VP T V+Y  LIDG    G
Sbjct: 414 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAG 473

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  AF    EM+ +GI+P   TY  LI+ L    ++ EA  ++++M + G+ PD   Y+
Sbjct: 474 RVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYS 533

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            LI G         A+ +  EM+ +G  P  +TY  L        R ++ + + ++F
Sbjct: 534 ALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHF 590



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
           M   P  V+YNT++ G     K++EA +  + M   G +PD I+F         LI G C
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAF-------TTLIHGFC 53

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           K  +  +  +LL + + K   PD   Y S+I G
Sbjct: 54  KAGQPQVGHKLLNQAL-KRFRPDVFLYTSVIHG 85


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 171/316 (54%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G++P    Y + +S + K+ +++ A ++  +++E+ LVP    YN +++G      
Sbjct: 659 MKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNR 718

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M  Q I+P   TY  L+  L    ++ EA +M  +M E+G  PD + Y  
Sbjct: 719 VDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTS 778

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++   + G    A  +   M  K   P ++TY+SLI  L K+ R+ EA   FEN ++KG
Sbjct: 779 LMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKG 838

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++ ++++LID     G ++RA  L +EM R +  P+ VTYN L+ G  + G++  A 
Sbjct: 839 CTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAE 898

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL++M++ G  PD +       TYN LI G+ K    D AE   + M  KGI PD  T+
Sbjct: 899 KLLEEMEKVGCVPDLV-------TYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITF 951

Query: 301 FSLIEGIASVDKAAES 316
            SLIE +  VDK  E+
Sbjct: 952 TSLIESLGKVDKLLEA 967



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 164/342 (47%), Gaps = 38/342 (11%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           +QPD+ T+  FV    + GRL+ A+  +++M ++G+ P   T+  LID     GN++ A 
Sbjct: 283 IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEAC 342

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F + M      P   TY  L++ L    ++ EA ++  EM E    PD+I YN LI+G 
Sbjct: 343 KFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGL 402

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + G A  A  L  EM  +G+ P + TY  +I VL K  R  EA QLF +   +G +PD+
Sbjct: 403 GKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDV 462

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEM------------------------DRMKVHPD-- 219
             +N LID     G +++  +++KEM                        DR   +P   
Sbjct: 463 FTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLG 522

Query: 220 -----EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
                E+TYNTLM      G V+EA +LL+ MK+           PT +TY  L+ GL K
Sbjct: 523 FKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKH-------ECIPTVVTYTTLVDGLGK 575

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
               D A  LLREM  +G  P   TY SL+      D+  ES
Sbjct: 576 AGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEES 617



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 176/381 (46%), Gaps = 63/381 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK     P   TY + V G+ K GRL+EA  +L +M++ G  P+ VTY++L+  +  +  
Sbjct: 554 MKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQ 613

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG---------- 110
            E + S  DEMV++G +   STY+L+I+ L     + +A D+   M E+G          
Sbjct: 614 EEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKT 673

Query: 111 -------------------------IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                    +VPD+  YNI++NG  +     +A  L D M ++ 
Sbjct: 674 LLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQN 733

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P + TYTSL+  L K  R+ EA  +F     +G  PD+V + +L+D     G +  A 
Sbjct: 734 ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHAL 793

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
            + + M + +  PD VTY++L+    ++G+VEEA    +    +G  P+   ++      
Sbjct: 794 IIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSF 853

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P  +TYN L+ GL K    ++AE+LL EM   G  PD 
Sbjct: 854 GKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDL 913

Query: 298 NTYFSLIEGIASVDKAAESSN 318
            TY  LI+G+  +    E+ +
Sbjct: 914 VTYNILIDGVGKMGMVDEAES 934



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 168/343 (48%), Gaps = 38/343 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+    P+  TY + V+G+ K GRLEEA  +  +MKEN   P A+ YNTLIDG    G 
Sbjct: 348 MKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGE 407

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +MA     EM  +G++P   TYN++I  L    +  EA  +  ++ E+G VPD  TYN 
Sbjct: 408 ADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNT 467

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ------------------------PTM------ 150
           LI+   + G   K  ++  EM+ KG +                        P++      
Sbjct: 468 LIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLG 527

Query: 151 -LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
            +TY +L+        + EA +L E       +P +V +  L+DG    G ++ A SLL+
Sbjct: 528 EITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLR 587

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM++    P  VTY++LM    ++ + EE+  L D+M R+G   D +S      TY+ +I
Sbjct: 588 EMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVAD-VS------TYSLVI 640

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             LCK+ + D A ++   M  +G+ P    Y +L+  +   +K
Sbjct: 641 NCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEK 683



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 161/335 (48%), Gaps = 31/335 (9%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY + +S     G ++EA ++LE MK++  +PT VTY TL+DG    G L+ A S   EM
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
            KQG  P+  TY+ L+       +  E+  +  EM  KG V D  TY+++IN  C+  + 
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A  +   M  +G++P +  Y +L+  L K  ++  A Q+F       ++PD  ++N +
Sbjct: 650 DQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIM 709

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G   +  ++ A  L+  M    + PD  TY +L+ G  + G++EEA  +  +M   G 
Sbjct: 710 VNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH 769

Query: 252 KPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEE 283
           +PD +++                             P  +TY++LI  L K    + A  
Sbjct: 770 EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYY 829

Query: 284 LLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
                +SKG TP+   Y SLI+       VD+A E
Sbjct: 830 FFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALE 864



 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 150/299 (50%), Gaps = 7/299 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            MK++ + PD +TY S + G+ K GRLEEA  M  +M E G  P  V Y +L+D     G 
Sbjct: 729  MKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGK 788

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            L  A      M K+  +P   TY+ LI  L  E ++ EA    +    KG  P+   Y+ 
Sbjct: 789  LSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSS 848

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+ + + G   +A  L +EM  +   P ++TY +L+  L+K  R+  A++L E     G
Sbjct: 849  LIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVG 908

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             +PD+V +N LIDG    G ++ A S  K M    + PD +T+ +L+    +  K+ EA 
Sbjct: 909  CVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEAC 968

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L D M+  G       +NP+ +TYN LI  L +  +   A  +  EM  KG  PD  T
Sbjct: 969  ELFDSMEEEG-------YNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGIT 1020



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 161/336 (47%), Gaps = 38/336 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-------------------- 40
           +K +G  PD +TY + +  + K G++++   ++++M E G                    
Sbjct: 453 LKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGA 512

Query: 41  ----LVPT-------AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89
                 P+        +TYNTL+  + + G+++ A    + M K   +PT  TY  L+  
Sbjct: 513 DRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDG 572

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
           L    ++ EA  +L+EM ++G  P  +TY+ L+  + +    +++ SL DEM+ KG    
Sbjct: 573 LGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVAD 632

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + TY+ +I  L K + + +A  +F     +GM P +  +  L+     +  I+ A  +  
Sbjct: 633 VSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFN 692

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           E+    + PD   YN +++G  +  +V+EA +L+D MK + I PD         TY +L+
Sbjct: 693 ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPD-------LFTYTSLL 745

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
            GL K+   + A  +  +M  +G  PD   Y SL++
Sbjct: 746 DGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMD 781



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 129/275 (46%), Gaps = 11/275 (4%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A  +  QMK  G  P+   YN +++     G    A     ++ +  I P A T+ + +H
Sbjct: 236 ALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVH 295

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                 ++  A + ++EM + GI P   T+ +LI+   + GN  +A    + M +    P
Sbjct: 296 SFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSP 355

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
            ++TYT+L+  L+K  R+ EA ++F         PD + +N LIDG    G  + A  L 
Sbjct: 356 NVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLF 415

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           KEM    + P+  TYN ++    + G+  EA +L   +K +G  PD         TYN L
Sbjct: 416 KEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPD-------VFTYNTL 468

Query: 269 IQGLCKNQEGDLAEELLREMVSKG----ITPDDNT 299
           I  L K  + D    +++EMV KG    I+ D N 
Sbjct: 469 IDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNA 503



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 135/304 (44%), Gaps = 12/304 (3%)

Query: 7   QPDSY-----TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           Q D Y     TY   +  +      +   ++L  M + G   +     +L+  + +  N+
Sbjct: 174 QQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNV 233

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    ++M   G  P+ + YN ++  L+       A  +  ++G+  I PD+ T+ I 
Sbjct: 234 SGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIF 293

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++ + R G    A     EMI  GI P + T+T LI  L K   + EA + F        
Sbjct: 294 VHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRC 353

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P++V +  L++G    G +E A  +  EM      PD + YNTL+ G  + G+ + A  
Sbjct: 354 SPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACG 413

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L  +MK RG+ P+         TYN +I  L K      A +L  ++  +G  PD  TY 
Sbjct: 414 LFKEMKDRGLVPN-------LRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYN 466

Query: 302 SLIE 305
           +LI+
Sbjct: 467 TLID 470



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 140/340 (41%), Gaps = 24/340 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS G  P +  Y   +  + K G    A  +  ++ +  + P A T+   +  +   G 
Sbjct: 243 MKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGR 302

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM+K GI P   T+ +LI  L+    + EA      M      P+ +TY  
Sbjct: 303 LDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTT 362

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG  + G  ++A  +  EM      P  + Y +LI  L K      A  LF+    +G
Sbjct: 363 LVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRG 422

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++  +N +I      G    A+ L  ++      PD  TYNTL+    + G++++  
Sbjct: 423 LVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVL 482

Query: 241 RLLDQMKRRG-----------------------IKPDHISFNPT-RLTYNALIQGLCKNQ 276
            ++ +M  +G                       ++   + F     +TYN L+     N 
Sbjct: 483 AIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNG 542

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             D A +LL  M      P   TY +L++G+    +  E+
Sbjct: 543 HVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEA 582



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 93/169 (55%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M+ R   P+  TY + +SG+ K GRL  A ++LE+M++ G VP  VTYN LIDG    G 
Sbjct: 869  MQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGM 928

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ A S+   M ++GI+P   T+  LI  L    K++EA ++   M E+G  P  +TYN+
Sbjct: 929  VDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNV 988

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
            LI+   R G   +A  +  EM  KG  P  +T   +  +LS + +   A
Sbjct: 989  LIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVREQQFHA 1037


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 62  LETKGNQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M  A+ LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 242 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 HDLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 162/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM  A+ +  EM  KG+VP+ +T+  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  ++   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------TGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++ A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +++  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|255660972|gb|ACU25655.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 376

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/294 (35%), Positives = 160/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +R+  A  L+    +KG
Sbjct: 205 LINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LEGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 150/292 (51%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC +   + A  L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 113/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+ + Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ ++  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  ++G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLEGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+       E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYN 220


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 165/312 (52%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD  T+ + ++G+C EG + +A   L +     L P  ++Y  LI G+C +G 
Sbjct: 335 MFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGE 394

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+ +G  P   T+  LIH L++  K+ EA  + ++M E+ + PD   YN+
Sbjct: 395 LMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNV 454

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+      A ++ +EM+ K +QP    Y +LI    +   + +A ++FE    KG
Sbjct: 455 LISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 514

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV  NA+I G+C  G +  A   +  M ++   PDE TY T++ G  +QG +  A 
Sbjct: 515 VRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGAL 574

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R L  M +R  KP+ +       TY++LI G CK  + D AE L   M ++ ++P+  TY
Sbjct: 575 RWLCDMIKRKCKPNVV-------TYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTY 627

Query: 301 FSLIEGIASVDK 312
             LI  +   DK
Sbjct: 628 TILIGSLFKKDK 639



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 156/299 (52%), Gaps = 7/299 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+Y+    V G+C EGR+EE  +++E     G +P  V YN LIDGYC +G++       
Sbjct: 203 DNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLL 262

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM  +G +PT  TY  LI+ L  +  + +   +  EM ++G+ P+   YN +I+  C+C
Sbjct: 263 GEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKC 322

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            +A +A  +  +M   G  P ++T+ +LI  L  +  + +A+      + + + P+ + +
Sbjct: 323 WSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSY 382

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             LI G C  G +  A  LL EM      PD VT+  L+HG    GKV EA  + ++M  
Sbjct: 383 TPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE 442

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           R + PD    N     YN LI GLCK      A+ +L EM+ K + PD+  Y +LI+G 
Sbjct: 443 RQVFPD---VN----IYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGF 494



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 163/310 (52%), Gaps = 11/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G  P   TYGS ++ + K+G LE+   +  +M++ GL P    YN++ID  C   +
Sbjct: 265 MEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWS 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M   G  P   T+N LI  L  E  + +A+  L+E   + + P+ ++Y  
Sbjct: 325 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTP 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G    A  L  EM+ +G  P ++T+ +LI  L    ++ EA  + E    + 
Sbjct: 385 LIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQ 444

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+ ++N LI G C    +  A ++L+EM    V PDE  Y TL+ G  R   + +AR
Sbjct: 445 VFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDAR 504

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL--REMVSKGITPDDN 298
           ++ + M+ +G++PD +S        NA+I+G C  Q G ++E +L    M   G  PD+ 
Sbjct: 505 KIFEFMEHKGVRPDIVSC-------NAMIKGYC--QFGMMSEAILCMSNMRKVGCIPDEF 555

Query: 299 TYFSLIEGIA 308
           TY ++I G A
Sbjct: 556 TYTTVISGYA 565



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 43/356 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  PD  T+G+ + G+   G++ EA  + E+M E  + P    YN LI G C K  
Sbjct: 405 MMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHM 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +  +EM+++ + P    Y  LI   +    + +A  + + M  KG+ PD ++ N 
Sbjct: 465 LPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNA 524

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G   +A      M   G  P   TYT++I   +KQ  +  A +   + + + 
Sbjct: 525 MIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRK 584

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +++LI+G+C  G+ + A  L   M    + P+ VTY  L+    ++ KV  A 
Sbjct: 585 CKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAG 644

Query: 241 RLLDQMKRRGIKPDHISF------------------------------------------ 258
              + M      P+ ++                                           
Sbjct: 645 LYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDI 704

Query: 259 -NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
            +P    YNA+I  LC++     A +    M  KG  P+  T+ SL+ G  SV K+
Sbjct: 705 GDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKS 760



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 143/345 (41%), Gaps = 64/345 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           M   G  P     G+ V+     G L +A+ M E+++E  G +P     N L+     + 
Sbjct: 124 MSLAGAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQR 183

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             + A    DEM+ +       +  +L+  L +E ++ E   +++     G +P  + YN
Sbjct: 184 RWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYN 243

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LI+GYCR G+  +   L  EM                                    AK
Sbjct: 244 VLIDGYCRRGDMGRGLLLLGEM-----------------------------------EAK 268

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G LP +V + +LI+     G++E+  SL  EM +  + P+   YN+++   C+     +A
Sbjct: 269 GFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQA 328

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
             +L QM   G  PD I+F                            NP +L+Y  LI G
Sbjct: 329 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 388

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            C   E   A +LL EM+ +G TPD  T+ +LI G+    K +E+
Sbjct: 389 FCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEA 433



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 50/293 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + VQPD + Y + + G  +   L +A ++ E M+  G+ P  V+ N +I GYC  G 
Sbjct: 475 MLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGM 534

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M K G +P   TY  +I     +  +  A   L +M ++   P+ +TY+ 
Sbjct: 535 MSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSS 594

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+ G+   A  L   M  + + P ++TYT LI  L K+++++ A   FE  L   
Sbjct: 595 LINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNH 654

Query: 181 MLPDIVM--------------------------------------------------FNA 190
             P+ V                                                   +NA
Sbjct: 655 CSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNA 714

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +I   C +  +  A      M +    P+ +T+ +L++G C  GK    R +L
Sbjct: 715 IIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSMNWRTIL 767



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 90/247 (36%), Gaps = 50/247 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY + +SG  K+G L  A R L  M +    P  VTY++LI+GYC  G+
Sbjct: 545 MRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGD 604

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--- 117
            + A      M  + + P   TY +LI  L  + K++ A    + M      P+ +T   
Sbjct: 605 TDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHY 664

Query: 118 -----------------------------------------------YNILINGYCRCGN 130
                                                          YN +I   CR   
Sbjct: 665 LVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNM 724

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            ++A    + M  KG  P  +T+ SL++      + +    +  N   +     I  +  
Sbjct: 725 LREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSMNWRTILPNEFQQEEFEIIFRYKF 784

Query: 191 LIDGHCT 197
           L D + T
Sbjct: 785 LFDQYAT 791


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 9/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   + Y +   + G+C+     +A  +L +M+ N L+P   +YNT+I G+C    
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    +EM   G   +  T+ +LI       KM EA   LKEM   G+  D + Y  
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTS 252

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C CG   +  +L DE++ +G  P  +TY +LI    K  ++ EA ++FE  + +G
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG 312

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +  LIDG C  G  + A  LL  M      P+ VTYN +++  C+ G V +A 
Sbjct: 313 VRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAV 372

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV--SKGITPDDN 298
            +++ MK+R  +PD+I       TYN L+ GLC   + D A +LL  M+  S    PD  
Sbjct: 373 EIVELMKKRRTRPDNI-------TYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 299 TYFSLIEGIA 308
           +Y +LI G+ 
Sbjct: 426 SYNALIHGLC 435



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 11/317 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  P + TY + + G CK G+L+EAS + E M E G+ P   TY  LIDG C  G  + 
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    + M+++   P A TYN++I++L  +  + +A ++++ M ++   PD+ITYNIL+ 
Sbjct: 336 ALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLG 395

Query: 124 GYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           G C  G+  +A  L   M+       P +++Y +LI  L K+NR+ +A  +++  + K  
Sbjct: 396 GLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG 455

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             D V  N L++     G++ +A  L K++   K+  +  TY  ++ G C+ G +  A+ 
Sbjct: 456 AGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKG 515

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL +M+   ++P       +   YN L+  LCK    D A  L  EM      PD  ++ 
Sbjct: 516 LLCKMRVSELQP-------SVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFN 568

Query: 302 SLIEGI--ASVDKAAES 316
            +I+G   A   K+AES
Sbjct: 569 IMIDGSLKAGDIKSAES 585



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 156/299 (52%), Gaps = 11/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNK 58
           MK R  +PD+ TY   + G+C +G L+EAS++L  M ++     P  ++YN LI G C +
Sbjct: 378 MKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
             L  A    D +V++       T N+L++  L    + +A ++ K++ +  IV +S TY
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             +I+G+C+ G    A  L  +M    +QP++  Y  L+  L K+  + +A +LFE    
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR 557

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
               PD+V FN +IDG    G+I+ A SLL  M R  + PD  TY+ L++   + G ++E
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDE 617

Query: 239 ARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           A    D+M   G +PD HI         +++++      E D   EL++++V K I  D
Sbjct: 618 AISFFDKMVDSGFEPDAHIC--------DSVLKYCISQGETDKLTELVKKLVDKDIVLD 668



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 131/274 (47%), Gaps = 7/274 (2%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           E A     +M E       V+ + L++ Y        AF     M+K+G       +N+L
Sbjct: 89  ELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNIL 148

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           +  L    +  +A  +L+EM    ++PD  +YN +I G+C     +KA  L +EM   G 
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
             +++T+  LI    K  +M EA    +     G+  D+V++ +LI G C  G ++R  +
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKA 268

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L  E+      P  +TYNTL+ G C+ G+++EA  + + M  RG++P+         TY 
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVY-------TYT 321

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LI GLC   +   A +LL  M+ K   P+  TY
Sbjct: 322 GLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTY 355



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 139/292 (47%), Gaps = 8/292 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +L+ A  + +Q  ++G    A   N L+       N E+AFSF  +M++        + +
Sbjct: 53  QLKNAVSVFQQAVDSG-SSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLS 111

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            L+   +  RK   A  +L  M ++G   +   +NIL+ G CR     KA SL  EM   
Sbjct: 112 GLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRN 171

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + P + +Y ++I    +   + +A +L       G    +V +  LID  C  G ++ A
Sbjct: 172 SLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEA 231

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
              LKEM  M +  D V Y +L+ G C  G+++  + L D++  RG        +P  +T
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGD-------SPCAIT 284

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN LI+G CK  +   A E+   M+ +G+ P+  TY  LI+G+  V K  E+
Sbjct: 285 YNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 36/272 (13%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEA-----------------------------------SRM 32
           PD  +Y + + G+CKE RL +A                                     +
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
            +Q+ ++ +V  + TY  +IDG+C  G L +A     +M    + P+   YN L+  L  
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           E  + +A  + +EM      PD +++NI+I+G  + G+ K A SL   M   G+ P + T
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y+ LI    K   + EA   F+  +  G  PD  + ++++    + G  ++   L+K++ 
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLV 661

Query: 213 RMKVHPDEVTYNTLMHGRCR-QGKVEEARRLL 243
              +  D+    T+M   C     ++ A+RLL
Sbjct: 662 DKDIVLDKELTCTVMDYMCNSSANMDLAKRLL 693


>gi|255660976|gb|ACU25657.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 376

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 7/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCLDHKVARALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+  K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIRGLCSVGKMQLALSLYFDMNLWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I    NT
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LEGLCSCNRISDAILFLDDAVTKKIVLTKNT 376



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNIMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N ++  L    K+ E   + + M E G V DS TY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNTMMRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC + +   A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQMHNILIRGLCSVGK 284



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 151/316 (47%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +  S ++ + + G+   G+++E   + E M E+G V  + TY  L+ G+C  G 
Sbjct: 51  MGSEGNRSVS-SFNTMMRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGY 109

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ +    +   ++G +  A  Y+ +I+ L  E  +  A  +L  M + G  P+   YN 
Sbjct: 110 IDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNT 169

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING       + A  +  EM      PT++TY +LI    K     EA  L +  L KG
Sbjct: 170 LINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKG 229

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ ++ L++G C +  + RA  L  ++      PD   +N L+ G C  GK++ A 
Sbjct: 230 LDPGVITYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQMHNILIRGLCSVGKMQLAL 289

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M      P+ +S       +N L++G  K+ +   A  +   ++  G+ PD  +Y
Sbjct: 290 SLYFDMNLWKCAPNLVS-------HNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342

Query: 301 FSLIEGIASVDKAAES 316
              +EG+ S ++ +++
Sbjct: 343 NITLEGLCSCNRISDA 358



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YNI++NGY R    K  F L + M  +G   ++ ++ +++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNIMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNTMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D   +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G        E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYN 220


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 177/316 (56%), Gaps = 7/316 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G   D  +YG+ ++G+CK GR+  A ++L+++    + P AV YN +ID  C    + 
Sbjct: 159 AQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVN 218

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF    +MV + I P   TYN LI       K+  A D+  +M ++ I P+  T+NIL+
Sbjct: 219 DAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILV 278

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+C+ G    A  +   M+   I+P ++TY SL+      N++ +A  +F++  + G++
Sbjct: 279 DGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVI 338

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            ++ ++  +++G C    ++ A +L +EM   K+ P+ VTY++L+ G C+ G++  A +L
Sbjct: 339 ANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKL 398

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +D+M  RG +P      P  +TY++++  LCKN   D A  LL  +  +GI PD  TY  
Sbjct: 399 VDEMHDRG-QP------PNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTI 451

Query: 303 LIEGIASVDKAAESSN 318
           LI+G+    +  ++ N
Sbjct: 452 LIKGLCQSGRLEDAQN 467



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 161/312 (51%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++ D +T+   ++   + G    +  +  ++ + G  PTA+T+NTLI G C KG+
Sbjct: 87  MELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGH 146

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F D++V QG      +Y  LI+ L    ++  A  +LK +  K + P+++ YN+
Sbjct: 147 IHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNM 206

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+      AF L+ +M+ K I P + TY +LI   S  +++  A  LF     + 
Sbjct: 207 IIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKEN 266

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  FN L+DG C  G +  A  +L  M +  + PD VTYN+LM G C   KV +A+
Sbjct: 267 INPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAK 326

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + D M   G+  +          Y  ++ G CK +  D A  L  EM  + I P+  TY
Sbjct: 327 DIFDSMASGGVIAN-------VQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTY 379

Query: 301 FSLIEGIASVDK 312
            SLI+G+  + +
Sbjct: 380 SSLIDGLCKLGR 391



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 158/293 (53%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   + P+ YT+   V G CKEG++ +A  +L  M ++ + P  VTYN+L+DGYC+   
Sbjct: 262 MKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINK 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M   G++     Y  +++     + + EA ++ +EM  + I+P+ +TY+ 
Sbjct: 322 VNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSS 381

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A  L DEM  +G  P ++TY+S++  L K + + +A  L  N   +G
Sbjct: 382 LIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQG 441

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +  LI G C +G +E A ++ +++     + D   Y  ++ G C +G  ++A 
Sbjct: 442 IRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKAL 501

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            LL +M+  G  P+         TY  +I  L +  E D AE+LLREM+ +G+
Sbjct: 502 ALLSKMEDNGCIPN-------AKTYELVILSLFEKDENDTAEKLLREMIVRGL 547



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 155/300 (51%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ + PD +TY + +SG     +L  A  +  +MK+  + P   T+N L+DG+C +G 
Sbjct: 227 MVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGK 286

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M+K  I P   TYN L+       K+ +A D+   M   G++ +   Y  
Sbjct: 287 VNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTT 346

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NG+C+     +A +L +EM  + I P ++TY+SLI  L K  R+  A +L +    +G
Sbjct: 347 MVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRG 406

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+IV +++++D  C N ++++A +LL  +    + PD  TY  L+ G C+ G++E+A+
Sbjct: 407 QPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQ 466

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + + +  +G       +N     Y  +IQG C     D A  LL +M   G  P+  TY
Sbjct: 467 NVFEDLLVKG-------YNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTY 519



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 157/311 (50%), Gaps = 7/311 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P ++ +   +S + K      A  + +QM+ NG+     T+N LI+ +   G   ++FS 
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSI 118

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K+G  PTA T+N LI  L ++  + +A     ++  +G   D ++Y  LING C+
Sbjct: 119 FAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCK 178

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  L   +  K +QP  + Y  +I  + K   + +A  L+   +AK + PD+  
Sbjct: 179 VGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFT 238

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +NALI G      +  A  L  +M +  ++P+  T+N L+ G C++GKV +A+ +L  M 
Sbjct: 239 YNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMM 298

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +  IKPD +       TYN+L+ G C   + + A+++   M S G+  +   Y +++ G 
Sbjct: 299 KDDIKPDVV-------TYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGF 351

Query: 308 ASVDKAAESSN 318
             +    E+ N
Sbjct: 352 CKIKMVDEAIN 362



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 28/281 (9%)

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           SF   ++ +   P    +N ++  L+  +    A  + ++M   GI  D  T+NILIN +
Sbjct: 47  SFNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCF 106

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + G    +FS+  +++ KG  PT +T+ +LI  L  +  + +A    +  +A+G   D 
Sbjct: 107 SQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQ 166

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +  LI+G C  G I  A  LLK +D   V P+ V YN ++   C+   V +A  L  Q
Sbjct: 167 VSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQ 226

Query: 246 MKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQE 277
           M  + I PD  ++                            NP   T+N L+ G CK  +
Sbjct: 227 MVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGK 286

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A+ +L  M+   I PD  TY SL++G  S++K  ++ +
Sbjct: 287 VNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKD 327



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 97/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R + P+  TY S + G+CK GR+  A +++++M + G  P  VTY++++D  C   +
Sbjct: 367 MRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHH 426

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    +  QGI P   TY +LI  L    ++ +A ++ +++  KG   D   Y +
Sbjct: 427 VDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTV 486

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+C  G   KA +L  +M   G  P   TY  +I  L +++    A++L    + +G
Sbjct: 487 MIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRG 546

Query: 181 ML 182
           +L
Sbjct: 547 LL 548


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 166/313 (53%), Gaps = 8/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+   Y S +SG+CK G +++A  +LE+M +NG  P   T+ +LI G C KG  E A
Sbjct: 309 GLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERA 368

Query: 65  FSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           F    ++++     P   TY  +I     E K+  A+ + + M E+G+VP++ TY  LI+
Sbjct: 369 FRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 428

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+ GN  KA+ L + M ++G  P   TY S++  L K+ R  EA +L        +  
Sbjct: 429 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEA 488

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +  LI   C   ++ +A   L +M ++   PD   Y TL+   CRQ  ++++ +L 
Sbjct: 489 DGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLF 548

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D++ + G+ P       T+ TY ++I G C+ ++  LA +  ++M   G  PD  +Y +L
Sbjct: 549 DEVIKLGLAP-------TKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGAL 601

Query: 304 IEGIASVDKAAES 316
           I G+    +  E+
Sbjct: 602 ISGLCKESRLDEA 614



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RGV PDS TY   + G C+ G + EA R + +M E G V    T   +I  +C K  
Sbjct: 235 MSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSL 294

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  ++ K G+ P    Y+ +I  L     + +A ++L+EM + G  P+  T+  
Sbjct: 295 VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 354

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI+G C+ G  ++AF L  ++I     +P + TYT++I    K+ ++  A+ LFE    +
Sbjct: 355 LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 414

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+   +  LIDGHC  GN  +A+ L++ M      P+  TYN+++ G C++G+ EEA
Sbjct: 415 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEA 474

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +LL+   +  I+ D +       TY  LI   CK  + + A   L +M   G  PD + 
Sbjct: 475 FKLLNTGFQNQIEADGV-------TYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHL 527

Query: 300 YFSLIEGIA 308
           Y +LI    
Sbjct: 528 YTTLIAAFC 536



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 152/291 (52%), Gaps = 7/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++S   +P+ +TY + +SG CKE +L  A  + E+MKE GLVP   TY TLIDG+C  GN
Sbjct: 376 IRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGN 435

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+   + M  +G  P   TYN ++  L    +  EA  +L    +  I  D +TY I
Sbjct: 436 FSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTI 495

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+  +  +A    ++M   G QP +  YT+LI    +QN M ++++LF+  +  G
Sbjct: 496 LISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLG 555

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    + ++I G+C    +  A    ++M      PD ++Y  L+ G C++ +++EAR
Sbjct: 556 LAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEAR 615

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           +L D M  +G+ P  +    TR+T   L    CK ++   A  +L  +  K
Sbjct: 616 QLYDTMIDKGLSPCEV----TRVT---LTYEYCKTEDFASAMVILERLNKK 659



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 154/304 (50%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M   G +P+ YT+ S + G+CK+G  E A R+ L+ ++ +   P   TY  +I GYC + 
Sbjct: 340 MVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEE 399

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A    + M +QG++P  +TY  LI          +A ++++ M  +G  P++ TYN
Sbjct: 400 KLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYN 459

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +++G C+ G A++AF L +      I+   +TYT LI    K+  M +A          
Sbjct: 460 SIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKV 519

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI ++  LI   C    ++ +  L  E+ ++ + P + TY +++ G CR+ KV  A
Sbjct: 520 GFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLA 579

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +   +M   G  PD IS       Y ALI GLCK    D A +L   M+ KG++P + T
Sbjct: 580 VKFFQKMSDHGCAPDSIS-------YGALISGLCKESRLDEARQLYDTMIDKGLSPCEVT 632

Query: 300 YFSL 303
             +L
Sbjct: 633 RVTL 636



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 147/294 (50%), Gaps = 8/294 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G+L+EA  M+  M+  GLV T    N +I        +E A +  DEM  +G+ P + TY
Sbjct: 188 GKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTY 247

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
             +I        ++EAD  + EM E+G V D+ T  ++I  +C      +A     ++  
Sbjct: 248 KYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTK 307

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G+ P ++ Y+S+I  L K+  + +A +L E  +  G  P++    +LI G C  G  ER
Sbjct: 308 MGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTER 367

Query: 204 AFSLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           AF L  ++ R     P+  TY  ++ G C++ K+  A  L ++MK +G+ P+        
Sbjct: 368 AFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPN-------T 420

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            TY  LI G CK      A EL+  M ++G  P+  TY S+++G+    +A E+
Sbjct: 421 NTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEA 474



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDS +YG+ +SG+CKE RL+EA ++ + M + GL P  VT  TL   YC   +
Sbjct: 586 MSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTED 645

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    + + K+  + T  T   LI +L  E+K+  A     ++ +K +  D +T   
Sbjct: 646 FASAMVILERLNKKLWIRTVHT---LIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAA 702

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI 146
             N  C   N     S   E I KGI
Sbjct: 703 F-NTACIESNKYALVSDLSERISKGI 727


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 170/345 (49%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P   TY   + G+CK   L +A ++ EQM + G VP  +TY TLIDG+     
Sbjct: 424 MSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M+ +G  PTA TY  ++H       + EA +++ +M E+G  P    +  
Sbjct: 484 MDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTS 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ Y   G A++A+ +  EM  +G  P ++ YTSLI +L    R+ EA  +F++ + KG
Sbjct: 544 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +  +I      GN+E A  +L+ M +  V PD   YN+LM G  +  +V++A 
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 241 RLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQG 271
            + D+M   GIKP+ ++FN                             PT ++Y  LI G
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L K      A    +EM+ +GI P+ +TY SLI  +A   +  E+
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEA 768



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 165/342 (48%), Gaps = 29/342 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G +P + TYGS V G CK   + EA  ++ QM+E G  P    + +L+  Y +KG 
Sbjct: 494 MLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGR 553

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A+    EM  +G  P    Y  LI  L    ++ EA  +   M EKG  PD++TY  
Sbjct: 554 AEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGT 613

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  + + GN + A  + + M   G+ P    Y SL+    K  R+ +A  +++  +A G
Sbjct: 614 IIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASG 673

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           + P+ V FN L+ G   +G  +RAFSL KEM ++ +V P  V+Y  L+ G  + G+V EA
Sbjct: 674 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEA 733

Query: 240 RRLLDQMKRRGIKPD----------------------------HISFNPTRLTYNALIQG 271
                +M  RGI P+                             +  NP    Y+ALI G
Sbjct: 734 FSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITG 793

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           L  +   D A ++ +EM+ +G  P++ TY  L  G  +  +A
Sbjct: 794 LIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 835



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 165/345 (47%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+ G  P+   Y + + G+ K GR+E+  +  E M  +  VPT  TY  +IDG C    
Sbjct: 389 LKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQM 448

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    ++MV++G +P   TY  LI       KM EA  +L  M  KG  P ++TY  
Sbjct: 449 LPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGS 508

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G+C+     +A  +  +M  +G +P +  +TSL+     + R  EA Q+     A+G
Sbjct: 509 IVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARG 568

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++++ +LID   + G +  A  +   M      PD +TY T++    + G VE A 
Sbjct: 569 CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAG 628

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +L+ M + G+ PD  ++N                            P  +T+N L+ GL
Sbjct: 629 EILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGL 688

Query: 273 CKNQEGDLAEELLREMVSKG-ITPDDNTYFSLIEGIASVDKAAES 316
            K+ + D A  L +EM+ K  + P   +Y  LI+G+    + +E+
Sbjct: 689 FKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEA 733



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 156/308 (50%), Gaps = 7/308 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D  +Y + + G+    R++EA  + E++K  G  P  V Y  +IDG    G +E      
Sbjct: 362 DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 421

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           ++M     +PT +TY ++I  L   + + +A  + ++M +KG VPD+ITY  LI+G+ + 
Sbjct: 422 EDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 481

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
               +A  L D M+ KG +PT +TY S++    K + + EA ++      +G  P + +F
Sbjct: 482 SKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIF 541

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            +L+  + + G  E A+ +L EM      PD + Y +L+      G+V EAR + D M  
Sbjct: 542 TSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIE 601

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +G  PD        LTY  +IQ   K    + A E+L  M   G+ PD   Y SL++G  
Sbjct: 602 KGCAPDA-------LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYV 654

Query: 309 SVDKAAES 316
            +++  ++
Sbjct: 655 KLERVDQA 662



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 161/329 (48%), Gaps = 23/329 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD   + + + G CK G+ +    +L Q  +    P    Y ++I GYC  G+
Sbjct: 81  MIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGD 139

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+  F   +EM+  G +P A+ Y +LI  L    ++ EA ++ + M + G + D +T+  
Sbjct: 140 LDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMT 199

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI      G   +A  L+ EMI +G +P +    SLIF L K  ++ EA+++++  +AK 
Sbjct: 200 LIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKK 259

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +    V +N+L+DG+C  G ++    LL +M      PD  TYN L+ G  R  ++++A 
Sbjct: 260 VATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDAL 319

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------RLTYNALIQGLCKNQEG 278
            L   +   G KP+  ++                          ++Y  +I+GL  ++  
Sbjct: 320 ELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRI 379

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGI 307
           D A EL  ++ + G +P+   Y ++I+G+
Sbjct: 380 DEACELFEKLKTAGCSPNVVAYTAVIDGL 408



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 146/312 (46%), Gaps = 8/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ PD       ++G+CK  ++++A  +  +M   G  PT V+YNT+I G  +   
Sbjct: 11  MHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDK 70

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A+ F + M+  G  P    +  LIH    +    +   ML     K   PD   Y  
Sbjct: 71  MDEAYKFFNSMIDNGCEPDVIAFTTLIHGFC-KAGQPQVGHMLLNQALKRFRPDVFLYTS 129

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G+    F + +EM+  G  P    Y  LI  L K  R+ EA +LFE     G
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG 189

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            L D V F  LI+    +G ++ A  L +EM      P     ++L+   C+ GKV+EA 
Sbjct: 190 CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEAN 249

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   +  + +         +R+ YN+L+ G CK    D   +LL +MV     PD  TY
Sbjct: 250 EIYQTVVAKKVA-------TSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTY 302

Query: 301 FSLIEGIASVDK 312
             L+ G +  ++
Sbjct: 303 NILVAGFSRANR 314



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 8/281 (2%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           +EEA   L++M   GL+P  V  N +++G C    ++ A     EM   G  PT  +YN 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L    KM EA      M + G  PD I +  LI+G+C+ G  +    L ++ + K 
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQAL-KR 119

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P +  YTS+I    K   +    ++ E  LA G +PD   +  LID  C  G ++ A+
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L + M +     D VT+ TL+      GK++EA  L  +M  RG       + P     
Sbjct: 180 ELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERG-------YEPYLEVQ 232

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           ++LI  LCK  + D A E+ + +V+K +      Y SL++G
Sbjct: 233 DSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDG 273



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           M EA D LKEM   G++PD +  NI++NG C+     KA  L  EM   G +PT+++Y +
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           +I  L+  ++M EA + F + +  G  PD++ F  LI G C  G  +    LL +  + +
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK-R 119

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
             PD   Y +++HG C+ G ++   ++L++M   G  PD  +       Y  LI  LCK 
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAA-------YFVLIDPLCKL 172

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
              D A EL   M   G   D  T+ +LIE +++   +D+A E
Sbjct: 173 GRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACE 215



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 13/259 (5%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM   G+MP     N++++ L   RK+ +A ++  EM   G  P  ++YN 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G        +A+   + MI  G +P ++ +T+LI    K  +  +   +  N   K 
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQP-QVGHMLLNQALKR 119

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ ++ ++I G+C  G+++  F +L+EM      PD   Y  L+   C+ G+V+EA 
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP----D 296
            L ++M++ G   D+++F         LI+ L  + + D A EL REM+ +G  P     
Sbjct: 180 ELFERMRKSGCLGDYVTFM-------TLIEALSNHGKLDEACELYREMIERGYEPYLEVQ 232

Query: 297 DNTYFSLIEGIASVDKAAE 315
           D+  F+L +    VD+A E
Sbjct: 233 DSLIFALCKA-GKVDEANE 250



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 1/177 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP-TAVTYNTLIDGYCNKG 59
           M + G++P++ T+   + G+ K+G+ + A  + ++M E   VP T V+Y  LIDG    G
Sbjct: 669 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAG 728

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  AFS   EM+ +GI+P   TY  LI+ L    ++ EA  ++++M + G+ PD   Y+
Sbjct: 729 RVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYS 788

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            LI G         A+ +  EM+ +G  P  +TY  L        R ++ + + ++F
Sbjct: 789 ALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHF 845


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 157/291 (53%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E K+ EA+++  EM ++G+VP+ +T+  LI+ 
Sbjct: 191 FRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDV 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ +G  P ++TY +LI+ L K+  + +   L +     G+ PD
Sbjct: 251 HCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D V Y  L+ G C++G+ ++A ++  
Sbjct: 311 KITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD+        TY  +I   CK  +   A  LL+EM   G  P
Sbjct: 371 EMLSVGLKPDNG-------TYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 170/333 (51%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           + ++G Q  D Y +   ++   + G + +A +     K++       T   +++      
Sbjct: 56  LGTKGTQRSDIYVFSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+++H    E +M  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K++++ EA++LF   L +
Sbjct: 176 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDR 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LID HC NG ++ A  + K+M      PD +TYNTL++G C++G +++ 
Sbjct: 236 GLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQV 295

Query: 240 RRLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQG 271
           R L+D+M   G+KPD I++                                + Y AL+ G
Sbjct: 296 RALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+    D AE++ REM+S G+ PD+ TY  +I
Sbjct: 356 LCQEGRADDAEKMFREMLSVGLKPDNGTYTMII 388



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 127/222 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++EA+ +  +M + GLVP  VT+ TLID +C  G 
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGM 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M+ QG  P   TYN LI+ L  +  + +   ++ EM   G+ PD ITY  
Sbjct: 257 VDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+L+  L ++ R  +A+++F   L+ G
Sbjct: 317 LIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C  G++  A  LLKEM R    P  VT
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 122/309 (39%), Gaps = 81/309 (26%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLK-----------------EMGEKGIV-PDSITYNI 120
           T  TY  +IH L   + ++EA  +++                  +G KG    D   ++ 
Sbjct: 12  TLHTYCTMIHFLCTHQMLLEAKSLIRIVVSRKGKDSASAVFAAILGTKGTQRSDIYVFSG 71

Query: 121 LINGYCRCGNAKKA-----------------------------------FSLHDEMIHKG 145
           L+  Y   G    A                                   +  + E++  G
Sbjct: 72  LMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEILECG 131

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
              ++  +  ++    K+  M  A  +F+     G+ P +V FN L++G+   G+++  F
Sbjct: 132 YPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGF 191

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS-------- 257
            L   M    V PD  TY+ L++G C++ KV+EA  L ++M  RG+ P+ ++        
Sbjct: 192 RLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVH 251

Query: 258 --------------------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                               F+P  +TYN LI GLCK  +      L+ EM   G+ PD 
Sbjct: 252 CKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDK 311

Query: 298 NTYFSLIEG 306
            TY +LI+G
Sbjct: 312 ITYTTLIDG 320


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 151/309 (48%), Gaps = 42/309 (13%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QPD YT+ + V G+C  GR EE   ML++MKE G  PT   Y  L+D +C +   E A  
Sbjct: 227 QPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEK 286

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +EM   G+MP   T  ++++    E +M  A  + + M  KG  P+  TYN ++ G+C
Sbjct: 287 ILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFC 346

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G   KA +L D+M   G++P                                   D+V
Sbjct: 347 NAGKVYKAMALLDQMRECGVEP-----------------------------------DVV 371

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N LI G C +G+I  AF LL+ M+   +  D+ TYN L+   C+ GKV+EA  L D +
Sbjct: 372 TYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGL 431

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + RGI+P+ ++F       N +I GLCK  + D+A   L  M+S G  PD  TY   IE 
Sbjct: 432 EYRGIRPNSVTF-------NTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIEN 484

Query: 307 IASVDKAAE 315
           +     + E
Sbjct: 485 LCKTKGSQE 493



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 158/318 (49%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +P +  Y + V   C+E + EEA ++L +M ++GL+P  VT   +++ YC +G 
Sbjct: 256 MKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGR 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M  +G  P   TYN ++       K+ +A  +L +M E G+ PD +TYN+
Sbjct: 316 MSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNL 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+   AF L   M   G+     TY  LI  L K  ++ EA  LF+    +G
Sbjct: 376 LIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V FN +I+G C  G  + A + L+ M      PD  TY+  +   C+    +E  
Sbjct: 436 IRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGL 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +D+M ++ +KP  ++       Y  +I  L   +   LA  +  +MVS+G +PD  TY
Sbjct: 496 FFIDEMLQKDVKPSTVN-------YTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTY 548

Query: 301 FSLIEGIASVDKAAESSN 318
            + +    +  +  E+ N
Sbjct: 549 TTSVRAYCNEGRLDEAEN 566



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 145/301 (48%), Gaps = 7/301 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +P+ +TY + V G C  G++ +A  +L+QM+E G+ P  VTYN LI G C  G+
Sbjct: 326 MRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGH 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M   G+     TYN+LI  L    K+ EA  +   +  +GI P+S+T+N 
Sbjct: 386 IGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNT 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G    A +  + MI  G  P   TY+  I  L K     E     +  L K 
Sbjct: 446 VINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKD 505

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  +I+      N   A  +  +M      PD VTY T +   C +G+++EA 
Sbjct: 506 VKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAE 565

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +MK+     D ++       YN LI G     + D A  +L+ M      P+  T+
Sbjct: 566 NVVTEMKKCRTIVDAMA-------YNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTF 618

Query: 301 F 301
           F
Sbjct: 619 F 619



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 153/317 (48%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TY   + G C +G +  A R+L  M+ NGL     TYN LID  C  G 
Sbjct: 361 MRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGK 420

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  D +  +GI P + T+N +I+ L    K   A   L+ M   G  PD+ TY+ 
Sbjct: 421 VDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSP 480

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C+   +++     DEM+ K ++P+ + YT +I  L  +     A +++   +++G
Sbjct: 481 FIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQG 540

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +   +  +C  G ++ A +++ EM + +   D + YNTL+ G    G+ + A 
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAV 600

Query: 241 RLLDQMKRRGIKPDHISF-------NPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSK 291
            +L  M      P+H +F          RL  +  ++     +  +LA+  EL   M   
Sbjct: 601 TILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKN 660

Query: 292 GITPDDNTYFSLIEGIA 308
            +     TY S++EG +
Sbjct: 661 SVPSSARTYLSILEGFS 677



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 137/307 (44%), Gaps = 38/307 (12%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           PT  TYN LI   C + +L  A  +   MV+ G  P A T+N LI      +++  A D+
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK------------------ 144
             +M  +G   D+++Y  LI G+C  G   +A  L  EM                     
Sbjct: 187 FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRG 246

Query: 145 -------------GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
                        G +PT   Y +L+ +  ++ +  EA+++       G++P +V    +
Sbjct: 247 EEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIV 306

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++ +C  G +  A  + + M      P+  TYN ++ G C  GKV +A  LLDQM+  G+
Sbjct: 307 VNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGV 366

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
           +PD +       TYN LI+G C +     A  LLR M   G+  D  TY  LI+ +    
Sbjct: 367 EPDVV-------TYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTG 419

Query: 312 KAAESSN 318
           K  E+ +
Sbjct: 420 KVDEACS 426



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 159/369 (43%), Gaps = 61/369 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D YTY   +  +CK G+++EA  + + ++  G+ P +VT+NT+I+G C  G 
Sbjct: 396 MEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGK 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A +F + M+  G  P   TY+  I  L   +   E    + EM +K + P ++ Y I
Sbjct: 456 FDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTI 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN      N   A  +  +M+ +G  P ++TYT+ +     + R+ EA+ +        
Sbjct: 516 VINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCR 575

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT------------------ 222
            + D + +N LIDGH + G  +RA ++LK M  +   P+  T                  
Sbjct: 576 TIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVP 635

Query: 223 ---------------------------------YNTLMHGRCRQGKVEEARRLLDQMKRR 249
                                            Y +++ G   + +++E   L+  MK  
Sbjct: 636 LKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKE- 694

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
               +++  N     YNAL+   CK +    A  LL  M+  G  P+   Y  L+ G+ +
Sbjct: 695 ----ENLPLNED--IYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTA 748

Query: 310 ---VDKAAE 315
               D+A E
Sbjct: 749 EGQADRAKE 757



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 146/360 (40%), Gaps = 58/360 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD+YTY  F+  +CK    +E    +++M +  + P+ V Y  +I+   N+ N
Sbjct: 466 MISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERN 525

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A     +MV QG  P   TY   +     E ++ EA++++ EM +   + D++ YN 
Sbjct: 526 YGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNT 585

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY--------------------TSL---- 156
           LI+G+   G   +A ++   M      P   T+                    TS+    
Sbjct: 586 LIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTI 645

Query: 157 -------IFVLSKQNRMIEADQ----LFENFLAKGMLPDIV----------------MFN 189
                  +F L K+N +  + +    + E F  +  L ++                 ++N
Sbjct: 646 ELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYN 705

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           AL++  C       A++LL  M      P+ + Y  L+ G   +G+ + A+ +    + +
Sbjct: 706 ALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWK 765

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
                   +N   + +  +I G  +    D+  +++  +      P D TY  L E + +
Sbjct: 766 -------EYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAMLTEELPT 818



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 11/174 (6%)

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
           H    PT  TY +LI  L ++  +  A +     +  G  PD   FN+LI G+C    +E
Sbjct: 122 HAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLE 181

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A  L  +M       D V+Y  L+ G C  G+++EA  L  +M +           P  
Sbjct: 182 VAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ-----------PDM 230

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            T+ AL++GLC    G+    +L++M   G  P    Y +L++      KA E+
Sbjct: 231 YTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEA 284


>gi|255660978|gb|ACU25658.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 373

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   + +  A QL+    +KG
Sbjct: 205 LINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMXGLCLDHXVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLXFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LEGLCSCNRISDAILFLHDAVTK 368



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 149/292 (51%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N ++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNXMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L+ GLC +   + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMXGLCLDHXVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNXMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+       E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYN 220


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 161/307 (52%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +  QP+ + Y + +  +CK+ ++ EA  +  +M   G+ P   TYN+LI   CN   
Sbjct: 159 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 218

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYN 119
            +   +  +EMV   IMP   ++N ++  L  E K+ EA D++ +M ++G  +P+ I+YN
Sbjct: 219 WKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYN 278

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LINGYC+     KA  L  EM  + + P  +TY++LI  L    R+ +A  LF   +A 
Sbjct: 279 TLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVAC 338

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             +P++V +  L+D  C N  +  A +LLK ++   + PD    N  + G CR G++E A
Sbjct: 339 SQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAA 398

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R L   +  +G++PD         TY+ +I GLC+    D A +L REM   G T +   
Sbjct: 399 RDLFSNLSSKGLQPD-------VWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCI 451

Query: 300 YFSLIEG 306
           Y ++  G
Sbjct: 452 YNTITRG 458



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 148/296 (50%), Gaps = 12/296 (4%)

Query: 23  EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST 82
           +G +   +RML         P+ V +N L+       +     S   +M   GI P   T
Sbjct: 43  DGAISSFNRMLRMQPP----PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYT 98

Query: 83  YNLLIHEL--LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            ++LI+    L   K+ EA  +  +M  +G  PD +TY  LING C+ GN   A  L   
Sbjct: 99  LHILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGS 158

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+ K  QP +  Y ++I  L K  ++ EA  LF   + KG+ PDI  +N+LI   C    
Sbjct: 159 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 218

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            +   +LL EM   K+ PD V++NT++   C++GKV EA  ++D+M +RG         P
Sbjct: 219 WKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRG------GCMP 272

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             ++YN LI G CK Q  D A  L  EM  + + PD  TY +LI G+  V++  ++
Sbjct: 273 NVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDA 328



 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 1/255 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
           M    + PD  ++ + V  +CKEG++ EA  ++++M +  G +P  ++YNTLI+GYC   
Sbjct: 229 MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQ 288

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A     EM +Q ++P   TY+ LIH L    ++ +A  +  EM     +P+ +TY 
Sbjct: 289 RIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR 348

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL++  C+     +A +L   +    + P +      I  + +   +  A  LF N  +K
Sbjct: 349 ILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSK 408

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD+  ++ +I+G C  G ++ A  L +EMD      +   YNT+  G  R  +   A
Sbjct: 409 GLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRA 468

Query: 240 RRLLDQMKRRGIKPD 254
            +LL +M  RG   D
Sbjct: 469 IQLLQEMVARGFSAD 483



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G+QPD +TY   ++G+C+ G L+EAS++  +M ENG       YNT+  G+     
Sbjct: 405 LSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
              A     EMV +G    AST  L +  L
Sbjct: 465 TSRAIQLLQEMVARGFSADASTMTLFVKML 494



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   + PD       + GMC+ G LE A  +   +   GL P   TY+ +I+G C +G 
Sbjct: 370 IEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGL 429

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM + G       YN +    L   +   A  +L+EM  +G   D+ T  +
Sbjct: 430 LDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTL 489

Query: 121 LI 122
            +
Sbjct: 490 FV 491



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR--QGKVEEAR 240
           P  V FN L+       +     SL  +MD   + P+  T + L++  C   +GK+ EA 
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRGKIGEAL 118

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L D+M   G +PD +       TY  LI GLCK      A  LL  MV K   P+   Y
Sbjct: 119 HLFDKMIGEGFRPDVV-------TYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAY 171

Query: 301 FSLIEGIASVDKAAESSN 318
            ++I+ +    +  E+ N
Sbjct: 172 NTIIDSLCKDRQVTEAFN 189


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 168/309 (54%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ P   +Y + + G CK+G +++A  ML+ + E GL P AVTY  LIDG+  KG+
Sbjct: 455 MVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGD 514

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E AF   ++M+   I PT  T+N +I+ L    ++ E  D L    ++G V  SITYN 
Sbjct: 515 SERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNS 574

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G    A   + EM   GI P ++TYTSLI  L K N++  A ++  +   KG
Sbjct: 575 IIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKG 634

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  D+V ++ALIDG C   ++E A     E+  + + P+ V YN+++ G      +E A 
Sbjct: 635 MKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAAL 694

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +  +  D          Y ++I GL K  +  LA +L  EM+SK I PD   Y
Sbjct: 695 NLHQEMIKNKVPCD-------LQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMY 747

Query: 301 FSLIEGIAS 309
             LI G+++
Sbjct: 748 TVLINGLSN 756



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 172/318 (54%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+QP+ +   S + G  ++  LE A  + ++  E+G +   VTYN L+      G 
Sbjct: 386 MKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHG-ITNVVTYNILLKWLGELGK 444

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  ++MV +GI P+  +YN LI     +  M +A  MLK + E+G+ P+++TY +
Sbjct: 445 VNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTL 504

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G++++AF + ++M+   I PT  T+ ++I  L K  R+ E      NF+ +G
Sbjct: 505 LIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQG 564

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +   + +N++IDG    G ++ A    +EM    + PD +TY +L+ G C+  K+  A 
Sbjct: 565 FVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLAL 624

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   MK +G+K D ++       Y+ALI G CK  + + A +   E++  G+TP+   Y
Sbjct: 625 EMHSDMKYKGMKLDVVA-------YSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVY 677

Query: 301 FSLIEGIASVDKAAESSN 318
            S+I G   ++    + N
Sbjct: 678 NSMISGFIHLNNMEAALN 695



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 142/271 (52%), Gaps = 7/271 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G    S TY S + G  KEG ++ A     +M E+G+ P  +TY +LIDG C    + +
Sbjct: 563 QGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGL 622

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M  +G+      Y+ LI        M  A     E+ + G+ P+++ YN +I+
Sbjct: 623 ALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMIS 682

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+    N + A +LH EMI   +   +  YTS+I  L K+ ++  A  L+   L+K ++P
Sbjct: 683 GFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVP 742

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DIVM+  LI+G   NG +E A  +LKEMD   + P  + YN L+ G  R+G ++EA RL 
Sbjct: 743 DIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLH 802

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           D+M  +G+ PD         TY+ L+ G  K
Sbjct: 803 DEMLDKGLVPDDT-------TYDILVNGKLK 826



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 175/409 (42%), Gaps = 97/409 (23%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D YT    +    KEG+ EE  +  ++ K  GL   A  Y+ L+   C + +
Sbjct: 211 MVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLD 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA----DDMLK------------ 104
           L +A     EM + G +P+  TY  +I   + +   VEA    D+M+             
Sbjct: 271 LNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRS 330

Query: 105 -------------------EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                              E+ E G+VPD + +++LING  + G+ +KA+ L+  M   G
Sbjct: 331 LMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMG 390

Query: 146 IQP----------------------------------TMLTYTSLIFVLSKQNRMIEADQ 171
           IQP                                   ++TY  L+  L +  ++ EA  
Sbjct: 391 IQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGKVNEACN 450

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L+E  ++KG+ P +V +N LI GHC  G +++A+S+LK +    + P+ VTY  L+ G  
Sbjct: 451 LWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFF 510

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PTRL 263
           ++G  E A  + +QM    I P   +FN                             T +
Sbjct: 511 KKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSI 570

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           TYN++I G  K    D A    REM   GI+PD  TY SLI+G+   +K
Sbjct: 571 TYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNK 619



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 118/232 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY S + G+CK  ++  A  M   MK  G+    V Y+ LIDG+C   +
Sbjct: 595 MCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHD 654

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F  E++  G+ P    YN +I   +    M  A ++ +EM +  +  D   Y  
Sbjct: 655 MESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTS 714

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  + G    A  L+ EM+ K I P ++ YT LI  LS   ++  A ++ +      
Sbjct: 715 IIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNN 774

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           + P ++++N LI G+   GN++ AF L  EM    + PD+ TY+ L++G+ +
Sbjct: 775 ITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGKLK 826



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 27/329 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G + DS  +   +    +  ++ +A      M E+ LVP     N L+     +  +  A
Sbjct: 145 GFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDA 204

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEMV++GI     T ++++   + E K  E +   KE   +G+  D+  Y+IL+  
Sbjct: 205 RQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQA 264

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR  +   A  L  EM   G  P+  TYT++I    KQ   +EA +L +  ++ G+  +
Sbjct: 265 VCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMN 324

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +++  +L+ G+C  G++  A  L  E+    V PD V ++ L++G  + G +E+A  L  
Sbjct: 325 VIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYT 384

Query: 245 QMKRRGIKPDHISFNP---------------------------TRLTYNALIQGLCKNQE 277
           +MK  GI+P+    N                              +TYN L++ L +  +
Sbjct: 385 RMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGK 444

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + A  L  +MVSKGITP   +Y +LI G
Sbjct: 445 VNEACNLWEKMVSKGITPSLVSYNNLILG 473



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 10/246 (4%)

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           + G    +  +N L+   +   K+ +A +  + M E  +VP     N L+    R     
Sbjct: 143 RYGFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVC 202

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A  L+DEM+ +GI     T   ++    K+ +  E ++ F+    +G+  D   ++ L+
Sbjct: 203 DARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILV 262

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
              C   ++  A  LLKEM      P + TY  ++    +QG   EA RL D+M   G+ 
Sbjct: 263 QAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLP 322

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV-- 310
            + I    TR    +L++G C   + +LA +L  E+V  G+ PD   +  LI G + V  
Sbjct: 323 MNVIV---TR----SLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGD 375

Query: 311 -DKAAE 315
            +KA E
Sbjct: 376 MEKAYE 381


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 162/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L   
Sbjct: 135 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEX 194

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM + +++  EM + G+VP+ +T+  LI+G
Sbjct: 195 FRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDG 254

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 255 HCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 314

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF     M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 315 KITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 374

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KP+ I       TY  +I   CK  +     +L++EM   G  P   TY  L+
Sbjct: 375 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLM 427

Query: 305 EG 306
            G
Sbjct: 428 NG 429



 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 139/229 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++ + + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 201 MQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGR 260

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 261 VDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 320

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 321 LIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 380

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + P+I  +  +I+  C  G++     L+KEM R    P  VTYN LM+G
Sbjct: 381 LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 60  LETKGTQRSDIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 119

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 120 YFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFN 179

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L   M   G+QP + TY+ LI  L K+++M + ++LF+  L  
Sbjct: 180 TLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDX 239

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD VTYNTL++G C++G +++A
Sbjct: 240 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQA 299

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E    M+ + I  DD  
Sbjct: 300 QDLIDEMSMKGLKPD-------KITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVA 352

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 353 YTALISGLCQEGRSVDA 369


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 170/349 (48%), Gaps = 42/349 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+ + Y + +  +CK  R ++A R+ ++M   GL P  VTY  LI   C +G +E A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M  +GI  T   YN LI+    +  +  A  +L  M ++G+ P + +Y+ LI G
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 452

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR G+      LH EM  +GI     T+T+LI    K  +M EA +LF+  +   ++P+
Sbjct: 453 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC------------- 231
            V FN +I+G+C  GNI +AF L  +M  M + PD  TY +L+ G C             
Sbjct: 513 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 572

Query: 232 ----------------------RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                                 R+G+  E   L D+M  RG+K D +SF  T + Y AL 
Sbjct: 573 DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSF--TIIVYAAL- 629

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               K  + + +  L REM  +G+ PDD  Y  +I+ ++  +   ++ N
Sbjct: 630 ----KQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674



 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 164/310 (52%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+  +  Y   + G+CK  R++EA  +   M   G+    VTY TL+ G+C    
Sbjct: 224 MESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEE 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LEMA     +M++ G +P+ +  + +I EL  +  + EA  +  ++G+ G+VP+   YN 
Sbjct: 284 LEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNA 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+      A  L  EM  +G++P  +TY  LI  L K+  + +A  LF+    KG
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +  +N+LI+G+C  G+++RA  LL  M +  + P   +Y+ L+ G CR G +    
Sbjct: 404 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCM 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RGI  ++        T+ ALI G CK+++ D A  L  +M+   + P++ T+
Sbjct: 464 ELHREMAERGIAWNN-------YTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 301 FSLIEGIASV 310
             +IEG   V
Sbjct: 517 NVMIEGYCLV 526



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 162/318 (50%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  D  TY + V G C+   LE A R+   M   G VP+    + +ID    K  
Sbjct: 259 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKEL 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AFS   ++   G++P    YN LI +L    +  +AD + KEM  +G+ P+ +TY I
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G  + A  L D+M  KGI+ T+  Y SLI    KQ  +  A  L    + +G
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    ++ LI G C NG++     L +EM    +  +  T+  L++G C+  K++EA 
Sbjct: 439 LTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAA 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL D+M    + P+ +       T+N +I+G C       A +L  +MV  G+ PD+ TY
Sbjct: 499 RLFDKMIDSNVIPNEV-------TFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTY 551

Query: 301 FSLIEGI---ASVDKAAE 315
            SLI G+   + V KA E
Sbjct: 552 RSLISGLCLTSGVSKANE 569



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 76/369 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++YT+ + ++G CK+ +++EA+R+ ++M ++ ++P  VT+N +I+GYC  GN
Sbjct: 469 MAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 528

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------------------------- 92
           +  AF   D+MV+ G+ P   TY  LI  L +                            
Sbjct: 529 IRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTA 588

Query: 93  -------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E +  E   +  EM  +G+  D +++ I++    +  + +K+  L  EM  +G
Sbjct: 589 LLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQG 648

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P  + YT +I  LSK+  MI+A   ++  +  G  P+ V    LI+  C +G +  A 
Sbjct: 649 VKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAE 708

Query: 206 SLLKEMDRMKVHPDEVTYNT----------------------------------LMHGRC 231
            L KEM    V P++ TYN                                   L+ G C
Sbjct: 709 LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLC 768

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + GK++EA  L+ ++   G  PD IS       Y+ +I  LCK  + + A EL  EM+ K
Sbjct: 769 KAGKIQEAIDLMSKITESGFSPDCIS-------YSTIIHELCKMGDINKAFELWNEMLYK 821

Query: 292 GITPDDNTY 300
           G+ PD   Y
Sbjct: 822 GLKPDVVAY 830



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G+  + YT    +  + K  +   A  + ++M ++G+      Y   I  YC   NL+
Sbjct: 156 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 215

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M  +G+  +A  YN+L++ L    ++ EA ++   M   G+  D +TY  L+
Sbjct: 216 GARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLV 275

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+CR    + A  +  +MI  G  P+    + +I  L K+  + EA  L       GM+
Sbjct: 276 YGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMV 335

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +NALID  C N   + A  L KEM    + P+EVTY  L+H  C++G +E+A  L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M+ +GIK   ++  P    YN+LI G CK    D A  LL  MV +G+TP   +Y  
Sbjct: 396 FDKMRDKGIK---VTVYP----YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSP 448

Query: 303 LIEGIA 308
           LI G+ 
Sbjct: 449 LIAGLC 454



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 158/319 (49%), Gaps = 11/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  D Y Y + +   C+   L+ A  ++ +M+  G+  +AV YN L+ G C    
Sbjct: 189 MLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMR 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   ++ MV  G+     TY  L++      ++  A  +  +M   G VP     + 
Sbjct: 249 VQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSF 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +    ++AFSL  ++   G+ P +  Y +LI  L K  R  +AD+LF+    +G
Sbjct: 309 MIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  LI   C  G IE A  L  +M    +      YN+L++G C+QG ++ AR
Sbjct: 369 LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR 428

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LL  M + G+ P   S++P       LI GLC+N  GDL+   EL REM  +GI  ++ 
Sbjct: 429 GLLSGMVKEGLTPTAASYSP-------LIAGLCRN--GDLSSCMELHREMAERGIAWNNY 479

Query: 299 TYFSLIEGIASVDKAAESS 317
           T+ +LI G     K  E++
Sbjct: 480 TFTALINGFCKDKKMDEAA 498



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 157/343 (45%), Gaps = 43/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMC-----------------------------------KEGR 25
           M   G++PD+YTY S +SG+C                                   +EGR
Sbjct: 539 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGR 598

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
             E   + ++M   G+    V++  ++     + + E +     EM +QG+ P    Y  
Sbjct: 599 FTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTC 658

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L  E  M++A +   +M   G  P+++T+ +LIN  C+ G    A  L  EM+   
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P   TY   +   + +  M +A  L    L +G L  IV FN LI G C  G I+ A 
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+ ++      PD ++Y+T++H  C+ G + +A  L ++M  +G+KPD ++       Y
Sbjct: 778 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA-------Y 830

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           N  I+    + E D A  +   M+  G+ P+ +TY +L+ GI+
Sbjct: 831 NIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 873



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +  GI     T + ++F L K  +   A  LF+  L  G+  D  ++ A I  +C + N+
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  L+  M+   V    V YN LM+G C+  +V+EA  + + M   G+  D +     
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV----- 269

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
             TY  L+ G C+ +E ++A  +  +M+  G  P +
Sbjct: 270 --TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 162/304 (53%), Gaps = 9/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+ + + Y   +   CK G +E+A  +L +M+   + P   TYNTLI  YC KG 
Sbjct: 191 MARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGM 250

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A S +D M ++GI P   TYN LIH    E +M EA  + KE+  +   P+ +TY  
Sbjct: 251 HYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI--RDATPNHVTYTT 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR  +  +A  L +EM  +G+ PT++TY S++  L +  R+ +A++L      K 
Sbjct: 309 LIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKK 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V  N LI+ +C  G+++ A  +   M    +  D+ TY  L+HG C+  +++ A+
Sbjct: 369 IEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAK 428

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M   G       F+P+  TY+ L+ G C  Q  +   +L  E V KG+  D + Y
Sbjct: 429 ELLLSMLDAG-------FSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLY 481

Query: 301 FSLI 304
            +LI
Sbjct: 482 RALI 485



 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 159/303 (52%), Gaps = 9/303 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++PD  TY S + G CKEGR+ EA R+ +++++    P  VTY TLIDGYC   +
Sbjct: 261 MEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA--TPNHVTYTTLIDGYCRLND 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A   R+EM  QG+ PT  TYN ++ +L    ++ +A+ +L EM EK I PD++T N 
Sbjct: 319 LDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNT 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G+ K A  + + M+  G++    TY +LI    K   M  A +L  + L  G
Sbjct: 379 LINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P    ++ L+DG+C   N E    L  E  R  +  D+  Y  L+   C++ +V+ A+
Sbjct: 439 FSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAK 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   M+ +G   D +        Y +L     K  + + A +LL EM  + +      Y
Sbjct: 499 KIFSLMQEKGTLGDSV-------IYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIY 551

Query: 301 FSL 303
            +L
Sbjct: 552 RAL 554



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 164/329 (49%), Gaps = 32/329 (9%)

Query: 8   PD--SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           PD  S+ +   V         +EA ++ E M  NG  P       L++        +M +
Sbjct: 126 PDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVW 185

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               +M + G+      YN+LIH       + +AD++L EM  K + PD  TYN LI+ Y
Sbjct: 186 KVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLY 245

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ G   +A S+ D M  +GI+P ++TY SLI    K+ RM EA +LF+    +   P+ 
Sbjct: 246 CKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI--RDATPNH 303

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +  LIDG+C   ++++A  L +EM+   ++P  VTYN+++   C  G++ +A +LL++
Sbjct: 304 VTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNE 363

Query: 246 MKRRGIKPDHISFNPT----------------------------RLTYNALIQGLCKNQE 277
           M  + I+PD+++ N                              + TY ALI G CK +E
Sbjct: 364 MSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIRE 423

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG 306
            D A+ELL  M+  G +P   TY  L++G
Sbjct: 424 MDGAKELLLSMLDAGFSPSYCTYSWLVDG 452



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 134/264 (50%), Gaps = 9/264 (3%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            ++ L+  Y N    + A    + M+  G  P      +L++ L  +R       + K+M
Sbjct: 132 VFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKM 191

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
              G+  +   YN+LI+  C+ G+ +KA +L  EM  K + P + TY +LI +  K+   
Sbjct: 192 ARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMH 251

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            EA  + +    +G+ PDIV +N+LI G C  G +  A  L KE+      P+ VTY TL
Sbjct: 252 YEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIR--DATPNHVTYTTL 309

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           + G CR   +++A RL ++M+ +G+        PT +TYN++++ LC+      A +LL 
Sbjct: 310 IDGYCRLNDLDQALRLREEMEAQGLY-------PTVVTYNSILRKLCEIGRIRDANKLLN 362

Query: 287 EMVSKGITPDDNTYFSLIEGIASV 310
           EM  K I PD+ T  +LI     +
Sbjct: 363 EMSEKKIEPDNVTCNTLINAYCKI 386



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 8/229 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++ D +TY + + G CK   ++ A  +L  M + G  P+  TY+ L+DGYCN+ N
Sbjct: 399 MVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQN 458

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E      DE V++G+    S Y  LI       ++  A  +   M EKG + DS+ Y  
Sbjct: 459 EEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTS 518

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L   Y + G A  A  L DEM  + +  T+  Y +L    +  N ++    LF N +   
Sbjct: 519 LAYAYWKLGKANAASDLLDEMYKRRLMITLKIYRALNASYAGDNSIL---SLFWNHVVAA 575

Query: 181 MLPDIVMFNALIDG---HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
                 +  A +D      T+ ++E  F  L+ +  +   P++  ++ L
Sbjct: 576 PYSSSQLVMAYVDWTNKRITSVHVEGPF--LEPVSFINESPEQADFDKL 622


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   GNL+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYAP 414



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + GN  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L D+M  +G+KPD       ++TY  LI G CK    + A E  + M+ + I  DD  
Sbjct: 296 QDLTDEMSMKGLKPD-------KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D+  EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+++TY + V G+CK+ RL+ A  ++ + ++    P  VTYNTL+      G ++ A
Sbjct: 77  GCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEA 136

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   +M ++G +PT  ++N +I  L   R++ +A ++  EM ++   P+ +TY+++I+G
Sbjct: 137 LATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDG 196

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A  L D M+ +G +P ++ YT L+   S   R+  A  L    +++G +PD
Sbjct: 197 LCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPD 256

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +  +ID  C  G ++ A  + +E+   K  P+ VTY+ L+ G CR  +V+E  +++ 
Sbjct: 257 VVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMR 316

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  R          P  +TYN +I GL      + A  + REM   G  PD  TY  L 
Sbjct: 317 EMACR----------PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLK 366

Query: 305 EGIASVD 311
             +  +D
Sbjct: 367 RALRMID 373



 Score =  156 bits (395), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 157/317 (49%), Gaps = 9/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M   G+Q +  T    + G+C+ GR+ +A    +   E     P  V+Y TLI+G C  G
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 60  NLEMAFS-FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
            ++ AF  FR  +   G  P A TYN L+  L  + ++  A  ++ E  ++   PD +TY
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTY 120

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N L+    + G   +A +   +M  +G  PT++++ ++I  L +  R+ +A ++F   + 
Sbjct: 121 NTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMID 180

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +   P++V ++ +IDG C +  ++ A  LL  M      PD V Y  L+ G    G+++ 
Sbjct: 181 RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDS 240

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  LL +M  +G  PD +       TY  +I  LCK    D A E+ RE+V+   +P+  
Sbjct: 241 ALGLLRRMVSQGCIPDVV-------TYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVV 293

Query: 299 TYFSLIEGIASVDKAAE 315
           TY +LI G     +  E
Sbjct: 294 TYSALIGGYCRASRVDE 310



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 3/257 (1%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           + R   PD  TY + ++ + + GR++EA     QM E G VPT V++N +I G C    L
Sbjct: 109 RKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRL 168

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    +EM+ +   P   TY+++I  L    ++ EA  +L  M  +G  PD + Y  L
Sbjct: 169 ADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 228

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           + G+   G    A  L   M+ +G  P ++TYT +I  L K  R+ +A ++F   +A   
Sbjct: 229 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 288

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P++V ++ALI G+C    ++    +++E   M   P+ VTYNT++ G     + EEA  
Sbjct: 289 SPNVVTYSALIGGYCRASRVDEGGKVMRE---MACRPNVVTYNTMIWGLSMVDRNEEAYG 345

Query: 242 LLDQMKRRGIKPDHISF 258
           +  +M   G  PD  ++
Sbjct: 346 MFREMSECGFVPDARTY 362



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 13/215 (6%)

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD---EMIHKGIQPTMLTYTSLIFVLSK 162
           M  +G+  +  T +I++ G CRCG   +A    D   E+ H   QP +++YT+LI  L K
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHA--QPDVVSYTTLINGLCK 58

Query: 163 QNRMIEADQLFENFLAKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
             R+  A  LF   +A G   P+   +NAL+DG C    ++ A +++ E  +    PD V
Sbjct: 59  LGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVV 118

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TYNTLM    + G+V+EA     QM   G       + PT +++NA+I GLC+ +    A
Sbjct: 119 TYNTLMAALFQLGRVDEALATFTQMTEEG-------YVPTLVSFNAIITGLCRARRLADA 171

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            E+  EM+ +   P+  TY  +I+G+   D+  E+
Sbjct: 172 LEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEA 206



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 3/226 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   ++ + ++G+C+  RL +A  +  +M +    P  VTY+ +IDG C    
Sbjct: 143 MTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQ 202

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    D MV +G  P    Y  L+       ++  A  +L+ M  +G +PD +TY +
Sbjct: 203 LDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTV 262

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+ G    A  +  E++     P ++TY++LI    + +R+ E  ++      + 
Sbjct: 263 VIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR- 321

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             P++V +N +I G       E A+ + +EM      PD  TY  L
Sbjct: 322 --PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 365


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 170/349 (48%), Gaps = 42/349 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+ + Y + +  +CK  R ++A R+ ++M   GL P  VTY  LI   C +G +E A
Sbjct: 356 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 415

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M  +GI  T   YN LI+    +  +  A  +L  M ++G+ P + +Y+ LI G
Sbjct: 416 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 475

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR G+      LH EM  +GI     T+T+LI    K  +M EA +LF+  +   ++P+
Sbjct: 476 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 535

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC------------- 231
            V FN +I+G+C  GNI +AF L  +M  M + PD  TY +L+ G C             
Sbjct: 536 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 595

Query: 232 ----------------------RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                                 R+G+  E   L D+M  RG+K D +SF  T + Y AL 
Sbjct: 596 DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSF--TIIVYAAL- 652

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               K  + + +  L REM  +G+ PDD  Y  +I+ ++  +   ++ N
Sbjct: 653 ----KQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 697



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 164/310 (52%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+  +  Y   + G+CK  R++EA  +   M   G+    VTY TL+ G+C    
Sbjct: 247 MESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEE 306

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LEMA     +M++ G +P+ +  + +I EL  +  + EA  +  ++G+ G+VP+   YN 
Sbjct: 307 LEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNA 366

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+      A  L  EM  +G++P  +TY  LI  L K+  + +A  LF+    KG
Sbjct: 367 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 426

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +  +N+LI+G+C  G+++RA  LL  M +  + P   +Y+ L+ G CR G +    
Sbjct: 427 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCM 486

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RGI  ++        T+ ALI G CK+++ D A  L  +M+   + P++ T+
Sbjct: 487 ELHREMAERGIAWNN-------YTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 539

Query: 301 FSLIEGIASV 310
             +IEG   V
Sbjct: 540 NVMIEGYCLV 549



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 162/318 (50%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  D  TY + V G C+   LE A R+   M   G VP+    + +ID    K  
Sbjct: 282 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKEL 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AFS   ++   G++P    YN LI +L    +  +AD + KEM  +G+ P+ +TY I
Sbjct: 342 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G  + A  L D+M  KGI+ T+  Y SLI    KQ  +  A  L    + +G
Sbjct: 402 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    ++ LI G C NG++     L +EM    +  +  T+  L++G C+  K++EA 
Sbjct: 462 LTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAA 521

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL D+M    + P+ ++F       N +I+G C       A +L  +MV  G+ PD+ TY
Sbjct: 522 RLFDKMIDSNVIPNEVTF-------NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTY 574

Query: 301 FSLIEGI---ASVDKAAE 315
            SLI G+   + V KA E
Sbjct: 575 RSLISGLCLTSGVSKANE 592



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 76/369 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++YT+ + ++G CK+ +++EA+R+ ++M ++ ++P  VT+N +I+GYC  GN
Sbjct: 492 MAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 551

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------------------------- 92
           +  AF   D+MV+ G+ P   TY  LI  L +                            
Sbjct: 552 IRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTA 611

Query: 93  -------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E +  E   +  EM  +G+  D +++ I++    +  + +K+  L  EM  +G
Sbjct: 612 LLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQG 671

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P  + YT +I  LSK+  MI+A   ++  +  G  P+ V    LI+  C +G +  A 
Sbjct: 672 VKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAE 731

Query: 206 SLLKEMDRMKVHPDEVTYNT----------------------------------LMHGRC 231
            L KEM    V P++ TYN                                   L+ G C
Sbjct: 732 LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLC 791

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + GK++EA  L+ ++   G  PD IS       Y+ +I  LCK  + + A EL  EM+ K
Sbjct: 792 KAGKIQEAIDLMSKITESGFSPDCIS-------YSTIIHELCKMGDINKAFELWNEMLYK 844

Query: 292 GITPDDNTY 300
           G+ PD   Y
Sbjct: 845 GLKPDVVAY 853



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 7/305 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G+  + YT    +  + K  +   A  + ++M ++G+      Y   I  YC   NL+
Sbjct: 179 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 238

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M  +G+  +A  YN+L++ L    ++ EA ++   M   G+  D +TY  L+
Sbjct: 239 GARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLV 298

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+CR    + A  +  +MI  G  P+    + +I  L K+  + EA  L       GM+
Sbjct: 299 YGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMV 358

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +NALID  C N   + A  L KEM    + P+EVTY  L+H  C++G +E+A  L
Sbjct: 359 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 418

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M+ +GIK   ++  P    YN+LI G CK    D A  LL  MV +G+TP   +Y  
Sbjct: 419 FDKMRDKGIK---VTVYP----YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSP 471

Query: 303 LIEGI 307
           LI G+
Sbjct: 472 LIAGL 476



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 158/319 (49%), Gaps = 11/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  D Y Y + +   C+   L+ A  ++ +M+  G+  +AV YN L+ G C    
Sbjct: 212 MLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMR 271

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   ++ MV  G+     TY  L++      ++  A  +  +M   G VP     + 
Sbjct: 272 VQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSF 331

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +    ++AFSL  ++   G+ P +  Y +LI  L K  R  +AD+LF+    +G
Sbjct: 332 MIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRG 391

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  LI   C  G IE A  L  +M    +      YN+L++G C+QG ++ AR
Sbjct: 392 LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR 451

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LL  M + G+ P   S++P       LI GLC+N  GDL+   EL REM  +GI  ++ 
Sbjct: 452 GLLSGMVKEGLTPTAASYSP-------LIAGLCRN--GDLSSCMELHREMAERGIAWNNY 502

Query: 299 TYFSLIEGIASVDKAAESS 317
           T+ +LI G     K  E++
Sbjct: 503 TFTALINGFCKDKKMDEAA 521



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 157/343 (45%), Gaps = 43/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMC-----------------------------------KEGR 25
           M   G++PD+YTY S +SG+C                                   +EGR
Sbjct: 562 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGR 621

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
             E   + ++M   G+    V++  ++     + + E +     EM +QG+ P    Y  
Sbjct: 622 FTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTC 681

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L  E  M++A +   +M   G  P+++T+ +LIN  C+ G    A  L  EM+   
Sbjct: 682 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 741

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P   TY   +   + +  M +A  L    L +G L  IV FN LI G C  G I+ A 
Sbjct: 742 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAI 800

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L+ ++      PD ++Y+T++H  C+ G + +A  L ++M  +G+KPD ++       Y
Sbjct: 801 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA-------Y 853

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           N  I+    + E D A  +   M+  G+ P+ +TY +L+ GI+
Sbjct: 854 NIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 896



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +  GI     T + ++F L K  +   A  LF+  L  G+  D  ++ A I  +C + N+
Sbjct: 178 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 237

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  L+  M+   V    V YN LM+G C+  +V+EA  + + M   G+  D +     
Sbjct: 238 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV----- 292

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
             TY  L+ G C+ +E ++A  +  +M+  G  P +
Sbjct: 293 --TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 326


>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 376

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 157/294 (53%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G L ++  +LE  +  G V  A  Y+ +I+G C +  
Sbjct: 85  MKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  +L+EMG     P  +TY+ 
Sbjct: 145 LDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTTHFSPTVVTYST 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG+ P+++TY+ LI  L    ++ +A QL+   ++KG
Sbjct: 205 LINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDCKVEKAFQLWNQVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N +I G C+ G ++ A SL   M+R    P+ VT+NTLM G  + G    A 
Sbjct: 265 FKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V K I 
Sbjct: 325 VIWARIMRNGLQPDIISYNIT-------LKGLCSCNRISGAILFLHDAVCKKIV 371



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 159/292 (54%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++G+     ++  F   + M ++G   + 
Sbjct: 1   CEIGDIDGAKRVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLWELMGREG-SRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEI 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+ ++ +A  +    +  G  P+  ++NALI+G      
Sbjct: 120 AERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  +L+EM      P  VTY+TL++G C+  +  EA  L+ +M  +G+       NP
Sbjct: 180 FEDAIRVLREMGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + +TY+ LI+GLC + + + A +L  +++SKG  PD   +  +I G+ SV K
Sbjct: 233 SVITYSLLIKGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGK 284



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 95/186 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +    P   TY + ++G+CK  R  EA  ++++M + GL P+ +TY+ LI G C    
Sbjct: 190 MGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDCK 249

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF   ++++ +G  P    +N++IH L    KM  A  +   M      P+ +T+N 
Sbjct: 250 VEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNT 309

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+ + G+ + A  +   ++  G+QP +++Y   +  L   NR+  A     + + K 
Sbjct: 310 LMEGFYKDGDFRNALVIWARIMRNGLQPDIISYNITLKGLCSCNRISGAILFLHDAVCKK 369

Query: 181 MLPDIV 186
           ++  ++
Sbjct: 370 IVLTVI 375



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 113/219 (51%), Gaps = 10/219 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A  + KE+ E  + PD++ YN ++NG+ R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AKRVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCFKLWELMGREG-SRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG + ++  +L+  +R     
Sbjct: 68  GLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++ K+++A  +L+ M + G KP+ H+        YNALI GL    +
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHV--------YNALINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + A  +LREM +   +P   TY +LI G+   ++  E+
Sbjct: 180 FEDAIRVLREMGTTHFSPTVVTYSTLINGLCKGERFGEA 218


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 155/303 (51%), Gaps = 8/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++   + Y + ++ + K+  ++EA  +  +  E   VP   ++N LI G C  G ++ A
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE-MGEKGIVPDSITYNILIN 123
           F F   M   G  P   +YN LI+      ++ +  D+LKE M  KG+ PD ITY  +I+
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+ G+ K A  L DEM+  GI+P   T+  LI    K   M  A  ++E  L  G LP
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLP 353

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V F +LIDG+C  G + +   L +EM    + P+  TY  L++  C++ ++ EAR  L
Sbjct: 354 DVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFL 413

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +K   + P    +NP       +I G CK  + D A  ++ EM  K   PD  T+  L
Sbjct: 414 RHLKSSEVVPKPFIYNP-------VIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTIL 466

Query: 304 IEG 306
           I G
Sbjct: 467 IIG 469



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 160/318 (50%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G+ PDS      VS   + G+L+ A   L ++   G+  +   YN L++    +  
Sbjct: 135 MRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNL 194

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     E ++   +P   ++N+LI  L    ++ +A +  + MG  G  PD ++YN 
Sbjct: 195 VDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNT 254

Query: 121 LINGYCRCGNAKKAFS-LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LING+CR     K    L ++M+ KG+ P ++TYTS+I    K   M  A +LF+  ++ 
Sbjct: 255 LINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P+   FN LIDG    GN+  A  + ++M  +   PD VT+ +L+ G CR+G+V + 
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L ++MK R + P+         TY  LI  LCK      A   LR + S  + P    
Sbjct: 375 LKLWEEMKVRNLSPN-------VYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFI 427

Query: 300 YFSLIEGIASVDKAAESS 317
           Y  +I+G     K  E++
Sbjct: 428 YNPVIDGFCKAGKVDEAN 445



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 136/260 (52%), Gaps = 1/260 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRML-EQMKENGLVPTAVTYNTLIDGYCNKG 59
           M + G  PD  +Y + ++G C+   + +   +L E M   G+ P  +TY ++I GYC  G
Sbjct: 240 MGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLG 299

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +++ A    DEMV  GI P   T+N+LI        M  A  M ++M   G +PD +T+ 
Sbjct: 300 DMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFT 359

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYCR G   +   L +EM  + + P + TY  LI  L K+NR+ EA     +  + 
Sbjct: 360 SLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSS 419

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++P   ++N +IDG C  G ++ A  ++ EM   K  PD++T+  L+ G C +G++ EA
Sbjct: 420 EVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEA 479

Query: 240 RRLLDQMKRRGIKPDHISFN 259
                +M      PD I+ N
Sbjct: 480 ISTFYKMIEINCVPDEITIN 499



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
           T +TY+LL+  L        A  +   M   GI+PDS    +L++ Y R G    A +  
Sbjct: 108 TFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFL 167

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           +E+   GI+ +   Y +L+ +L KQN + EA  LF   L    +PD+  FN LI G C  
Sbjct: 168 NEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRI 227

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ-MKRRGIKPDHIS 257
           G I++AF   + M      PD V+YNTL++G CR  ++ +   LL + M  +G+ PD I 
Sbjct: 228 GEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVI- 286

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                 TY ++I G CK  +   A EL  EMVS GI P+D T+  LI+G   V
Sbjct: 287 ------TYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKV 333


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 162/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 118 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 177

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM  A+ +  EM  KG+VP+ +T+  LI+G
Sbjct: 178 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDG 237

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 238 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 297

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 298 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 357

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  ++   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 358 EMLSVGLKPD-------TGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 410

Query: 305 EG 306
            G
Sbjct: 411 NG 412



 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 167/310 (53%), Gaps = 7/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           + D Y +   ++   + G L +A       +E+ L     T   +++        ++ + 
Sbjct: 50  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN L+NGY 
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 169

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G+  + F L   M+  G+QP + TY+ LI  L K+++M  A+ LF+  L KG++P+ V
Sbjct: 170 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGV 229

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A  L+D+M
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 289

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  Y +LI G
Sbjct: 290 SMKGLKPD-------KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISG 342

Query: 307 IASVDKAAES 316
           +    ++ ++
Sbjct: 343 LCQEGRSVDA 352



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE +++ A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 244 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 304 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +++  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 364 LKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 170/349 (48%), Gaps = 42/349 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+ + Y + +  +CK  R ++A R+ ++M   GL P  VTY  LI   C +G +E A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D+M  +GI  T   YN LI+    +  +  A  +L  M ++G+ P + +Y+ LI G
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAG 452

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR G+      LH EM  +GI     T+T+LI    K  +M EA +LF+  +   ++P+
Sbjct: 453 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC------------- 231
            V FN +I+G+C  GNI +AF L  +M  M + PD  TY +L+ G C             
Sbjct: 513 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 572

Query: 232 ----------------------RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                                 R+G+  E   L D+M  RG+K D +SF  T + Y AL 
Sbjct: 573 DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSF--TIIVYAAL- 629

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               K  + + +  L REM  +G+ PDD  Y  +I+ ++  +   ++ N
Sbjct: 630 ----KQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 164/310 (52%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+  +  Y   + G+CK  R++EA  +   M   G+    VTY TL+ G+C    
Sbjct: 224 MESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEE 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LEMA     +M++ G +P+ +  + +I EL  +  + EA  +  ++G+ G+VP+   YN 
Sbjct: 284 LEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNA 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+      A  L  EM  +G++P  +TY  LI  L K+  + +A  LF+    KG
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +  +N+LI+G+C  G+++RA  LL  M +  + P   +Y+ L+ G CR G +    
Sbjct: 404 IKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCM 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  RGI  ++        T+ ALI G CK+++ D A  L  +M+   + P++ T+
Sbjct: 464 ELHREMAERGIAWNN-------YTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516

Query: 301 FSLIEGIASV 310
             +IEG   V
Sbjct: 517 NVMIEGYCLV 526



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 162/318 (50%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  D  TY + V G C+   LE A R+   M   G VP+    + +ID    K  
Sbjct: 259 MVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKEL 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AFS   ++   G++P    YN LI +L    +  +AD + KEM  +G+ P+ +TY I
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G  + A  L D+M  KGI+ T+  Y SLI    KQ  +  A  L    + +G
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    ++ LI G C NG++     L +EM    +  +  T+  L++G C+  K++EA 
Sbjct: 439 LTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAA 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL D+M    + P+ +       T+N +I+G C       A +L  +MV  G+ PD+ TY
Sbjct: 499 RLFDKMIDSNVIPNEV-------TFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTY 551

Query: 301 FSLIEGI---ASVDKAAE 315
            SLI G+   + V KA E
Sbjct: 552 RSLISGLCLTSGVSKANE 569



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 76/369 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  ++YT+ + ++G CK+ +++EA+R+ ++M ++ ++P  VT+N +I+GYC  GN
Sbjct: 469 MAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGN 528

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------------------------- 92
           +  AF   D+MV+ G+ P   TY  LI  L +                            
Sbjct: 529 IRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTA 588

Query: 93  -------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                  E +  E   +  EM  +G+  D +++ I++    +  + +K+  L  EM  +G
Sbjct: 589 LLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQG 648

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P  + YT +I  LSK+  MI+A   ++  +  G  P+ V    LI+  C +G +  A 
Sbjct: 649 VKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAE 708

Query: 206 SLLKEMDRMKVHPDEVTY----------------------------------NTLMHGRC 231
            L KEM    V P++ TY                                  N L+ G C
Sbjct: 709 LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLC 768

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + GK++EA  L+ ++   G  PD IS       Y+ +I  LCK  + + A EL  EM+ K
Sbjct: 769 KAGKIQEAIDLMSKITESGFSPDCIS-------YSTIIHELCKMGDINKAFELWNEMLYK 821

Query: 292 GITPDDNTY 300
           G+ PD   Y
Sbjct: 822 GLKPDVVAY 830



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 7/305 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G+  + YT    +  + K  +   A  + ++M ++G+      Y   I  YC   NL+
Sbjct: 156 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 215

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M  +G+  +A  YN+L++ L    ++ EA ++   M   G+  D +TY  L+
Sbjct: 216 GARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLV 275

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+CR    + A  +  +MI  G  P+    + +I  L K+  + EA  L       GM+
Sbjct: 276 YGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMV 335

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +NALID  C N   + A  L KEM    + P+EVTY  L+H  C++G +E+A  L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M+ +GIK   ++  P    YN+LI G CK    D A  LL  MV +G+TP   +Y  
Sbjct: 396 FDKMRDKGIK---VTVYP----YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSP 448

Query: 303 LIEGI 307
           LI G+
Sbjct: 449 LIAGL 453



 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 158/319 (49%), Gaps = 11/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  D Y Y + +   C+   L+ A  ++ +M+  G+  +AV YN L+ G C    
Sbjct: 189 MLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMR 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   ++ MV  G+     TY  L++      ++  A  +  +M   G VP     + 
Sbjct: 249 VQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSF 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +    ++AFSL  ++   G+ P +  Y +LI  L K  R  +AD+LF+    +G
Sbjct: 309 MIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  LI   C  G IE A  L  +M    +      YN+L++G C+QG ++ AR
Sbjct: 369 LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRAR 428

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LL  M + G+ P   S++P       LI GLC+N  GDL+   EL REM  +GI  ++ 
Sbjct: 429 GLLSGMVKEGLTPTAASYSP-------LIAGLCRN--GDLSSCMELHREMAERGIAWNNY 479

Query: 299 TYFSLIEGIASVDKAAESS 317
           T+ +LI G     K  E++
Sbjct: 480 TFTALINGFCKDKKMDEAA 498



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 162/342 (47%), Gaps = 41/342 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++PD+YTY S +SG+C    + +A+  +  ++ +  V    +   L+ G+  +G 
Sbjct: 539 MVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGR 598

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
               +   DEM  +G+     ++ ++++  L +    ++  + +EM E+G+ PD I Y  
Sbjct: 599 FTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTC 658

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +  N  +A +  D+M+  G  P  +T+T LI  L K   +  A+ L +  LA  
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 181 MLPD----------------------------------IVMFNALIDGHCTNGNIERAFS 206
           +LP+                                  IV FN LI G C  G I+ A  
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAID 778

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           L+ ++      PD ++Y+T++H  C+ G + +A  L ++M  +G+KPD ++       YN
Sbjct: 779 LMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA-------YN 831

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             I+    + E D A  +   M+  G+ P+ +TY +L+ GI+
Sbjct: 832 IFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 873



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
           +  GI     T + ++F L K  +   A  LF+  L  G+  D  ++ A I  +C + N+
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  L+  M+   V    V YN LM+G C+  +V+EA  + + M   G+  D +     
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEV----- 269

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
             TY  L+ G C+ +E ++A  +  +M+  G  P +
Sbjct: 270 --TYRTLVYGFCRMEELEMALRITHDMIRLGFVPSE 303


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 161/291 (55%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+ +  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +  + KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLNVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A+ LF+  L K
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+ PD I       TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMIMKGLXPDKI-------TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 132/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L  G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 165/316 (52%), Gaps = 26/316 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K  G+ P+ YTYG F+  +C++G  EEA  +  +M+E G+ P AVT +T I+G C+   
Sbjct: 218 LKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKR 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ +     +           Y  +I     E K+ EA+D+  +M  +GI PD   Y  
Sbjct: 278 SDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGA 337

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ YC+ GN  +A +LH++M+  GI+  ++                  DQ F+ F   G
Sbjct: 338 LIHAYCKAGNLLQAVALHNDMVSNGIKTNLV------------------DQ-FKEFRDSG 378

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D V++N ++D  C  G +E A  LL EM   ++  D V Y TL+ G C QGK+ +A+
Sbjct: 379 IFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAK 438

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + ++MK RGI+PD +       TYN L+ G  +N     A ELL  + ++G+ P+  T+
Sbjct: 439 NMFEEMKERGIEPDIV-------TYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATH 491

Query: 301 FSLIEGIASVDKAAES 316
             +IEG+    K  E+
Sbjct: 492 NRIIEGLCMAGKVKEA 507



 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 169/342 (49%), Gaps = 35/342 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEA-------------SRMLEQMKE---NGLVPT 44
           M + G+ PD Y YG+ +   CK G L +A             + +++Q KE   +G+   
Sbjct: 323 MVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLD 382

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
            V YN ++D  C  G +E A    +EM  + +      Y  LI    ++ K+V+A +M +
Sbjct: 383 EVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFE 442

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           EM E+GI PD +TYNIL+ G+ R G  K+A  L D +  +G++P   T+  +I  L    
Sbjct: 443 EMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAG 502

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR--------MKV 216
           ++ EA+  F N L    L +   ++A++DG+C      +A+ L   + +        + V
Sbjct: 503 KVKEAEA-FLNTLEDKCLEN---YSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDV 558

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P+++ Y  L+   CR G ++ A+ + D +  RGI PD I       TY  +I G C+  
Sbjct: 559 EPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVI-------TYTMMINGYCRVN 611

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
               A ++  +M  +GI PD  TY  +++G +  +   ++ N
Sbjct: 612 CLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAIN 653



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 161/314 (51%), Gaps = 19/314 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            +  G+  D   Y   V  +CK G++EEA  +L +MK   +    V Y TLI GYC +G 
Sbjct: 374 FRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGK 433

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A +  +EM ++GI P   TYN+L+          EA ++L  +G +G+ P+S T+N 
Sbjct: 434 LVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNR 493

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G C  G  K+A +  + +  K ++     Y++++    K N   +A +LF     +G
Sbjct: 494 IIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSAMVDGYCKANFTRKAYELFSRLSKQG 549

Query: 181 ML--------PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           +L        P+ +M+  LI   C +G+++RA  +   +    + PD +TY  +++G CR
Sbjct: 550 ILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCR 609

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
              + EAR + + MK RGIKPD I       TY  ++ G  K      A  L  EM+++G
Sbjct: 610 VNCLREARDIFNDMKERGIKPDVI-------TYTVVLDGHSKTNNLQDAINLYDEMIARG 662

Query: 293 ITPDDNTYFSLIEG 306
           + PD  TY +L+ G
Sbjct: 663 LQPDIVTYTALLPG 676



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 144/281 (51%), Gaps = 19/281 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK R +  D   Y + ++G C +G+L +A  M E+MKE G+ P  VTYN L+ G+   G 
Sbjct: 409 MKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGL 468

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D +  QG+ P ++T+N +I  L M  K+ EA+  L  + +K +      Y+ 
Sbjct: 469 KKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSA 524

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI--------QPTMLTYTSLIFVLSKQNRMIEADQL 172
           +++GYC+    +KA+ L   +  +GI        +P  + Y  LI    +   M  A  +
Sbjct: 525 MVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLV 584

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           F+  + +G+ PD++ +  +I+G+C    +  A  +  +M    + PD +TY  ++ G  +
Sbjct: 585 FDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSK 644

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273
              +++A  L D+M  RG++PD +       TY AL+ G C
Sbjct: 645 TNNLQDAINLYDEMIARGLQPDIV-------TYTALLPGKC 678



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 7/196 (3%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA D L +   +G VP  ++ N L+N     G    A +++  +   G+ P   TY   I
Sbjct: 175 EAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFI 234

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L ++    EA  +F      G+ P+ V  +  I+G C++   +  +  L+ +      
Sbjct: 235 KALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWP 294

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
            D   Y  ++ G C + K++EA  +   M   GI PD          Y ALI   CK   
Sbjct: 295 IDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDG-------YIYGALIHAYCKAGN 347

Query: 278 GDLAEELLREMVSKGI 293
              A  L  +MVS GI
Sbjct: 348 LLQAVALHNDMVSNGI 363



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 33/270 (12%)

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSIT--- 117
           +A+SF  ++ + G      TY  LI  L   R   +   +L E+   ++ ++   IT   
Sbjct: 79  LAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALF 138

Query: 118 ---------------------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
                                 ++L+  Y R G   +A     +   +G  P +++   L
Sbjct: 139 DVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFL 198

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           +  L +  ++  A  ++ +    G+ P+   +   I   C  GN E A  + +EM+   V
Sbjct: 199 MNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGV 258

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
           +P+ VT +T + G C   + +     L  ++      D  +       Y A+I+G C   
Sbjct: 259 NPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFA-------YTAVIRGFCSEM 311

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +   AE++  +MV++GI PD   Y +LI  
Sbjct: 312 KLKEAEDVFIDMVNEGIAPDGYIYGALIHA 341


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 155/303 (51%), Gaps = 8/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++   + Y + ++ + K+  ++EA  +  +  E   VP   ++N LI G C  G ++ A
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE-MGEKGIVPDSITYNILIN 123
           F F   M   G  P   +YN LI+      ++ +  D+LKE M  KG+ PD ITY  +I+
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GYC+ G+ K A  L DEM+  GI+P   T+  LI    K   M  A  ++E  L  G LP
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLP 353

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V F +LIDG+C  G + +   L +EM    + P+  TY  L++  C++ ++ EAR  L
Sbjct: 354 DVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFL 413

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +K   + P    +NP       +I G CK  + D A  ++ EM  K   PD  T+  L
Sbjct: 414 RHLKSSEVVPKPFIYNP-------VIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTIL 466

Query: 304 IEG 306
           I G
Sbjct: 467 IIG 469



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 160/318 (50%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G+ PDS      VS   + G+L+ A   L ++   G+  +   YN L++    +  
Sbjct: 135 MRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNL 194

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     E ++   +P   ++N+LI  L    ++ +A +  + MG  G  PD ++YN 
Sbjct: 195 VDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNT 254

Query: 121 LINGYCRCGNAKKAFS-LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LING+CR     K    L ++M+ KG+ P ++TYTS+I    K   M  A +LF+  ++ 
Sbjct: 255 LINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSS 314

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P+   FN LIDG    GN+  A  + ++M  +   PD VT+ +L+ G CR+G+V + 
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L ++MK R + P+         TY  LI  LCK      A   LR + S  + P    
Sbjct: 375 LKLWEEMKVRNLSPN-------VYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFI 427

Query: 300 YFSLIEGIASVDKAAESS 317
           Y  +I+G     K  E++
Sbjct: 428 YNPVIDGFCKAGKVDEAN 445



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 149/293 (50%), Gaps = 12/293 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRML-EQMKENGLVPTAVTYNTLIDGYCNKG 59
           M + G  PD  +Y + ++G C+   + +   +L E M   G+ P  +TY ++I GYC  G
Sbjct: 240 MGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLG 299

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +++ A    DEMV  GI P   T+N+LI        M  A  M ++M   G +PD +T+ 
Sbjct: 300 DMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFT 359

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYCR G   +   L +EM  + + P + TY  LI  L K+NR+ EA     +  + 
Sbjct: 360 SLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSS 419

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++P   ++N +IDG C  G ++ A  ++ EM   K  PD++T+  L+ G C +G++ EA
Sbjct: 420 EVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEA 479

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK----NQEGDLAEELLREM 288
                +M      PD I       T N+LI  L K    N+   + +  L+++
Sbjct: 480 ISTFYKMIEINCVPDEI-------TINSLISCLLKAGMPNEASQIKQAALQKL 525



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
           T +TY+LL+  L        A  +   M   GI+PDS    +L++ Y R G    A +  
Sbjct: 108 TFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFL 167

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           +E+   GI+ +   Y +L+ +L KQN + EA  LF   L    +PD+  FN LI G C  
Sbjct: 168 NEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRI 227

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ-MKRRGIKPDHIS 257
           G I++AF   + M      PD V+YNTL++G CR  ++ +   LL + M  +G+ PD I 
Sbjct: 228 GEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVI- 286

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                 TY ++I G CK  +   A EL  EMVS GI P+D T+  LI+G   V
Sbjct: 287 ------TYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKV 333


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 105/312 (33%), Positives = 164/312 (52%), Gaps = 8/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K + V  D Y Y + ++  C+ G +  AS + ++   NG+ P   TY  LI+G+C  G 
Sbjct: 229 IKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQ 288

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     +M  +G+      +N +I        + +A ++   M   GI  D  TYN 
Sbjct: 289 IEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNT 348

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L  G CR    + A  L   M   G++   ++YT+LI + SK+  M+EA +LF +   KG
Sbjct: 349 LACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKG 408

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N +IDG+  +G+I  A    KEM++  + PD  TY  L+HG C  GKV+ A 
Sbjct: 409 SRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVAL 468

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL ++MK+RG KP+ ++       Y ALI GL K    + A +    M++ G+TPDD T 
Sbjct: 469 RLFEEMKQRGAKPNVVA-------YTALISGLAKEGRSEEAFQFYDNMLAAGLTPDD-TL 520

Query: 301 FSLIEGIASVDK 312
           +S++ G    DK
Sbjct: 521 YSMLVGSLHTDK 532



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 28/318 (8%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V G CK GR+++A R+L++M  +G+   A  YN L+D Y  + N         EM   G+
Sbjct: 140 VDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGV 199

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
            PT  TY +L+  L     + + + +  E+  K +  D   Y+ +IN YCR GN ++A  
Sbjct: 200 EPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASE 259

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           + DE +  GI+P   TY +LI    K  ++  A+ L  +   +G+  + ++FN +IDG+C
Sbjct: 260 VFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYC 319

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
            +G +++A  +   M+RM +  D  TYNTL  G CR  ++E+A++LL  M   G++ +++
Sbjct: 320 RHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYV 379

Query: 257 SFN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREM 288
           S+                             P+ +TYN +I G  K+     AE   +EM
Sbjct: 380 SYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEM 439

Query: 289 VSKGITPDDNTYFSLIEG 306
             KG+ PD  TY +L+ G
Sbjct: 440 EKKGLVPDVYTYAALVHG 457



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 134/261 (51%), Gaps = 7/261 (2%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           T ++ + ++DG+C  G ++ A    DEM + G+   A  YN L+     ++      ++L
Sbjct: 132 TPLSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVL 191

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           KEM   G+ P   TY IL++G    G+  K  S+ DE+  K +   +  Y+++I    + 
Sbjct: 192 KEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRA 251

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
             +  A ++F+  +  G+ P+   + ALI+G C  G IE A  LL +M    V  +++ +
Sbjct: 252 GNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIF 311

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           NT++ G CR G V++A  +   M+R GI+ D         TYN L  GLC+    + A++
Sbjct: 312 NTMIDGYCRHGMVDKALEIKAVMERMGIQLD-------VYTYNTLACGLCRVNRMEDAKK 364

Query: 284 LLREMVSKGITPDDNTYFSLI 304
           LL  M   G+  +  +Y +LI
Sbjct: 365 LLHIMTENGVESNYVSYTTLI 385



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 90/165 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+ +  +Y + +S   KEG + EA R+   M+  G  P+ VTYN +IDGY   G+
Sbjct: 369 MTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGS 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F+ EM K+G++P   TY  L+H   +  K+  A  + +EM ++G  P+ + Y  
Sbjct: 429 IREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTA 488

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           LI+G  + G +++AF  +D M+  G+ P    Y+ L+  L    R
Sbjct: 489 LISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKR 533



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           ++ + ++ G C+ G++++ARRLLD+M R G+K +   +NP   TY        + +    
Sbjct: 134 LSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYT-------RQKNDAR 186

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASV 310
             E+L+EM S G+ P   TY  L++G+++ 
Sbjct: 187 VAEVLKEMESGGVEPTVGTYTILVDGLSTA 216



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 42/157 (26%)

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           + ++DG C  G ++ A  LL EM R  V  +   YN L+    RQ        +L +M+ 
Sbjct: 137 SVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMES 196

Query: 249 RGIKPDHISFNPTRLTYNALIQGLC-----------------KNQEGDL----------- 280
            G++P       T  TY  L+ GL                  KN  GD+           
Sbjct: 197 GGVEP-------TVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYC 249

Query: 281 -------AEELLREMVSKGITPDDNTYFSLIEGIASV 310
                  A E+  E V  GI P++ TY +LI G   +
Sbjct: 250 RAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKI 286


>gi|255661018|gb|ACU25678.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 376

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 107/295 (36%), Positives = 153/295 (51%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G+CK G + ++  MLE  +  G V  A  Y+ +I+  C    
Sbjct: 85  MKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEIAEVKGGVLDAFAYSAMINWLCKDSK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G MP A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASKFEDAIRVFQEMGNTHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG  P ++TY+ LI  L    ++  A  L+   + KG
Sbjct: 205 LINGLCKAERFGEAYDLVKEMLEKGWNPCVITYSLLIKGLCLGRKVEMALHLWNQVINKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G  + A SL  +M+R    P+ VT+NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWNCAPNLVTHNTLMZGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
               ++ R G++PD IS+N T       ++GLC       A   L + ++K I P
Sbjct: 325 ATWARILRNGVQPDIISYNIT-------LKGLCSCNRISGAILFLHDALTKKIFP 372



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 157/292 (53%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A  + +++ E+ + P AV YN +++G+   G ++  F   + M K+G    A
Sbjct: 1   CESGDIDAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGRNVA 60

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S +N+++  L    K+ E   + + M + G V DSITY IL++G C+ G+  K+  + + 
Sbjct: 61  S-FNIMMRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEI 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K +++ +A  +    +  G +P+  ++NALI+G      
Sbjct: 120 AEVKGGVLDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM      P  +TYNTL++G C+  +  EA  L+ +M  +G       +NP
Sbjct: 180 FEDAIRVFQEMGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKG-------WNP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ LI+GLC  ++ ++A  L  ++++KG  PD   +  LI G+ SV K
Sbjct: 233 CVITYSLLIKGLCLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGLCSVGK 284



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 148/305 (48%), Gaps = 11/305 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           ++   + G+   G++ E   + E MK++G V  ++TY  L+ G C  G++  +    +  
Sbjct: 61  SFNIMMRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEIA 120

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             +G +  A  Y+ +I+ L  + K+ +A  +L  M + G +P++  YN LING       
Sbjct: 121 EVKGGVLDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASKF 180

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           + A  +  EM +    PT++TY +LI  L K  R  EA  L +  L KG  P ++ ++ L
Sbjct: 181 EDAIRVFQEMGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWNPCVITYSLL 240

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I G C    +E A  L  ++      PD   +N L+HG C  GK + A  L   M R   
Sbjct: 241 IKGLCLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWNC 300

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LREMVSKGITPDDNTYFSLIEGIAS 309
            P+ +       T+N L+ZG  K  +GD+   L     ++  G+ PD  +Y   ++G+ S
Sbjct: 301 APNLV-------THNTLMZGFYK--DGDIRNALATWARILRNGVQPDIISYNITLKGLCS 351

Query: 310 VDKAA 314
            ++ +
Sbjct: 352 CNRIS 356



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 111/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+++ Y + ++G+    + E+A R+ ++M      PT +TYNTLI+G C    
Sbjct: 155 MIKXGCMPNAHVYNALINGLVGASKFEDAIRVFQEMGNTHCSPTIITYNTLINGLCKAER 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G  P   TY+LLI  L + RK+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYDLVKEMLEKGWNPCVITYSLLIKGLCLGRKVEMALHLWNQVINKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++T+ +L+    K   +  A   +   L  G
Sbjct: 275 LIHGLCSVGKTQLALSLYFDMNRWNCAPNLVTHNTLMZGFYKDGDIRNALATWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+ P  +T
Sbjct: 335 VQPDIISYNITLKGLCSCNRISGAILFLHDALTKKIFPTIIT 376



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 113/222 (50%), Gaps = 11/222 (4%)

Query: 97  VEADDML-KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
           ++A  M+ KE+ E  + PD++ YN ++NG+ + G  K  F L + M  +G +  + ++  
Sbjct: 6   IDAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGR-NVASFNI 64

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
           ++  L    ++ E   ++E     G + D + +  L+ G C NG+I ++  +L+  +   
Sbjct: 65  MMRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEIAEVKG 124

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCK 274
              D   Y+ +++  C+  K+++A  +L+ M + G  P+ H+        YNALI GL  
Sbjct: 125 GVLDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHV--------YNALINGLVG 176

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             + + A  + +EM +   +P   TY +LI G+   ++  E+
Sbjct: 177 ASKFEDAIRVFQEMGNTHCSPTIITYNTLINGLCKAERFGEA 218


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG++P+ +T+  LI G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++  M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD I       TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-IG------TYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLR 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LI GHC NG ++ A  + K M    + PD +TYNTL++G C++G +++A
Sbjct: 242 GLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A +  + M+   I  DD  
Sbjct: 302 HXLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 134/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GL+P  VT+ TLI G+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M+ Q ++P   TYN LI+ L  +  + +A  ++ EM  KG+ PD  TY  
Sbjct: 263 VDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI   I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PDI  +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 197

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 232


>gi|255660994|gb|ACU25666.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 376

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 160/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS T+G  V G CK G + ++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSGFVEDSXTFGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  + M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 FDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAASKFEDAIIVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKKEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVRMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVAKKIV 371



 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKMSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M + G V DS T+ IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSXTFGILVHGFCKNGYINKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+    +A  +    +  G  P+  ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C++    EA  L+ ++  +G+       NP
Sbjct: 180 FEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 GVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGK 284



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 155/316 (49%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +  S ++   + G+   G+++E   + E MK++G V  + T+  L+ G+C  G 
Sbjct: 51  MGSEGNRSVS-SFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSXTFGILVHGFCKNGY 109

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  +    +   ++G +  A  Y+ +I+ L  E    +A  +L  M + G  P++  YN 
Sbjct: 110 INKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNT 169

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING       + A  +  EM      PT++TY +LI  L K+    EA  L +  L KG
Sbjct: 170 LINGLVAASKFEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKG 229

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ ++ L+ G C +  +ERA  L  ++      PD   +N L+HG C  GK++ A 
Sbjct: 230 LNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGKMQLAL 289

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M R    P+ +S       +N L++G  K+ +   A  +   ++  G+ PD  +Y
Sbjct: 290 SLYFDMNRWKCAPNLVS-------HNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342

Query: 301 FSLIEGIASVDKAAES 316
              ++G+ S ++ +++
Sbjct: 343 NITLKGLCSCNRISDA 358



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 113/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A  +  +M      PT +TYNTLI+G C K  
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVAASKFEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVRMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVAKKIVLTKIT 376



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKMSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D   F  L+ G C NG I ++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKKSGFVEDSXTFGILVHGFCKNGYINKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++   ++A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANFDKAVSVLNGMIKSGCKPNAHV--------YNTLINGLVAASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYN 220


>gi|255660974|gb|ACU25656.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 372

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 84  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 143

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 144 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 203

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +R+  A  L+    +KG
Sbjct: 204 LINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKG 263

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 264 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 323

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K
Sbjct: 324 VIWARILRNGLEPDIISYNIT-------LEGLCSCNRISDAILFLHDAVTK 367



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 149/291 (51%), Gaps = 8/291 (2%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           + G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + S
Sbjct: 1   ESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVS 59

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           ++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + +  
Sbjct: 60  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 119

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G       
Sbjct: 120 EQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKF 179

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I     
Sbjct: 180 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVI----- 234

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             TY+ L++GLC +   + A  L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 235 --TYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGK 283



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 8   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 66

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 67  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 126

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 127 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHV--------YNTLINGLVGASK 178

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+       E+ N
Sbjct: 179 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYN 219


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 173/362 (47%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  P    + S V   CK      A ++L++M++    P  V YN LI   C+ G 
Sbjct: 369 MIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGE 428

Query: 61  L-----------------------------------------EMAFSFRDEMVKQGIMPT 79
           L                                         E A+    EM+  G +P 
Sbjct: 429 LPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPD 488

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            STY+ +I  L    ++  A  + KEM   G+VPD  TY ILI+ + + G  K+A +  D
Sbjct: 489 TSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLD 548

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM+  G +PT++TYT+LI    K  ++  A++LFE  +AKG  P+++ + ALIDG+C +G
Sbjct: 549 EMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSG 608

Query: 200 NIERAFSLLKEM----------------DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           NIE+A  +   M                + +   P+ VTY  L+ G C+  KV++AR LL
Sbjct: 609 NIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLL 668

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + M   G +P+ I        Y+ALI G CK  + D A+E+  +MV +G  P+  TY SL
Sbjct: 669 ETMFVDGCEPNTI-------VYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSL 721

Query: 304 IE 305
           I+
Sbjct: 722 ID 723



 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 161/316 (50%), Gaps = 26/316 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+ TY   +  +C   R+E A  + ++MK  G+VP   TY  LID +   G 
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A ++ DEMV+ G  PT  TY  LIH  L  +K+  A+++ + M  KG  P+ ITY  
Sbjct: 540 IKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTA 599

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+ GN +KA  ++  M      P +  Y  +      +N + E            
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKI------KNNVAEK----------- 642

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V + AL+DG C    ++ A  LL+ M      P+ + Y+ L+ G C+  K++EA+
Sbjct: 643 --PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQ 700

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M  RG       +NP   TY++LI  L K++  DL  ++L +M+     P+   Y
Sbjct: 701 EVFHKMVERG-------YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIY 753

Query: 301 FSLIEGIASVDKAAES 316
             +I+G++ V K  E+
Sbjct: 754 TEMIDGLSKVAKTDEA 769



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 11/308 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TYG+ V G+CK  ++++A  +LE M  +G  P  + Y+ LIDG+C    L+ A  
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +MV++G  P   TY+ LI  L  ++++     +L +M E    P+ + Y  +I+G  
Sbjct: 702 VFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +     +A+ L   M  KG +P ++TYT++I    K  ++ +  +LF    +KG  P+ V
Sbjct: 762 KVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFV 821

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LI+  C  G+++ A++LL+EM +        +Y  ++ G  R+  +     LL+++
Sbjct: 822 TYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLG--LLEEV 879

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK--GITPDDNTYFSLI 304
           ++ G         PT L Y  LI    K    ++A EL +E++S    +T   N Y SLI
Sbjct: 880 EKNGSA-------PTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLI 932

Query: 305 EGIASVDK 312
              +   K
Sbjct: 933 YSFSYASK 940



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 145/320 (45%), Gaps = 22/320 (6%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++  Y   +SG+C+    EEA   L +M+    +P   TY  L+ G  NK  L      
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              M+ +G  P+ + +N L+H          A  +LK+M +    P  + YNILI   C 
Sbjct: 366 LSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICS 425

Query: 128 CGN---------AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            G          A+KA+   +EM+  G     +   S    L    +  +A ++    + 
Sbjct: 426 GGELPGPVTFELAEKAY---NEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMG 482

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G +PD   ++ +I   C    +E AF L KEM    V PD  TY  L+    + G +++
Sbjct: 483 NGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQ 542

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A   LD+M R G +       PT +TY  LI    K ++  +A EL   M++KG  P+  
Sbjct: 543 AHNWLDEMVRDGCE-------PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVI 595

Query: 299 TYFSLIEGIA---SVDKAAE 315
           TY +LI+G     +++KA +
Sbjct: 596 TYTALIDGYCKSGNIEKACQ 615



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 138/312 (44%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P++  Y + + G CK  +L+EA  +  +M E G  P   TY++LID       L++ 
Sbjct: 675 GCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLV 734

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M++    P    Y  +I  L    K  EA  ++  M EKG  P+ +TY  +I+G
Sbjct: 735 LKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDG 794

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G   K   L  EM  KG  P  +TYT LI        + EA  L E          
Sbjct: 795 FGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKH 854

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +  +I+G+        +  LL+E+++    P  + Y  L+    + G++E A  L  
Sbjct: 855 VSSYCKVIEGY--KREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALEL-- 910

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
               + +    +S    +  Y +LI       + D A EL  +M+  G+ PD  T+  L+
Sbjct: 911 ---HKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLL 967

Query: 305 EGIASVDKAAES 316
            G+  V +  E+
Sbjct: 968 MGLIRVRRWEEA 979



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 121/260 (46%), Gaps = 4/260 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+ YTY S +  + K+ RL+   ++L +M EN   P  V Y  +IDG      
Sbjct: 706 MVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAK 765

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+     M ++G  P   TY  +I       K+ +  ++ +EMG KG  P+ +TY +
Sbjct: 766 TDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTV 825

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G+  +A++L +EM        + +Y  +I     +   I +  L E     G
Sbjct: 826 LINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVI--EGYKREFILSLGLLEEVEKNG 883

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVEE 238
             P I+++  LID     G +E A  L KE+    M +   +  Y +L++      K++ 
Sbjct: 884 SAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDH 943

Query: 239 ARRLLDQMKRRGIKPDHISF 258
           A  L   M R G+ PD  +F
Sbjct: 944 AFELFYDMIRDGVIPDLGTF 963



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 138/332 (41%), Gaps = 37/332 (11%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G    A   L ++K+ G  PT +TYN L+  +     L+ A     EM + G+    
Sbjct: 217 CRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDE 276

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            T       L    K  EA  ++++   +  VP++I YN +I+G C     ++A    + 
Sbjct: 277 FTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNKMISGLCEASFFEEAMDFLNR 333

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M      P + TY  L+     + ++    ++    +A+G  P   +FN+L+  +C + +
Sbjct: 334 MRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDD 393

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV------EEARRLLDQMKRRGIKPD 254
              A+ LLK+M++ +  P  V YN L+   C  G++      E A +  ++M   G   +
Sbjct: 394 FSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLN 453

Query: 255 HIS----------------------------FNPTRLTYNALIQGLCKNQEGDLAEELLR 286
            ++                            F P   TY+ +I  LC     + A  L +
Sbjct: 454 KVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFK 513

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           EM   G+ PD  TY  LI+  +      ++ N
Sbjct: 514 EMKGTGVVPDVYTYTILIDCFSKAGIIKQAHN 545



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +P+  TY + + G  K G++++   +  +M   G  P  VTY  LI+  C  G+
Sbjct: 776 MEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGH 835

Query: 61  LEMAFSFRDEMVKQGIMPT-ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A++  +EM KQ   P   S+Y  +I     +R+ + +  +L+E+ + G  P  + Y 
Sbjct: 836 LDEAYALLEEM-KQTYWPKHVSSYCKVIEG--YKREFILSLGLLEEVEKNGSAPTILLYK 892

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT--YTSLIFVLSKQNRMIEADQLFENFL 177
           +LI+ + + G  + A  LH E+I   +  T     YTSLI+  S  +++  A +LF + +
Sbjct: 893 VLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMI 952

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             G++PD+  F  L+ G       E A  L   + +M ++
Sbjct: 953 RDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDIN 992



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N L+   CR G    A   L ++K  G KP       TR+TYNAL+Q   +  + D A+ 
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKP-------TRMTYNALVQVFLRADKLDTAQL 262

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + REM   G++ D+ T     + +  V K  E+
Sbjct: 263 VHREMSELGLSMDEFTLGFFAQALCKVGKWREA 295


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 161/292 (55%), Gaps = 7/292 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P+
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPN 415



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +I+      
Sbjct: 56  LETKGTQRSDXYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L   M   G+ P + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + ++M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 HDLIDEMSMKGLKPD-------KITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 136/222 (61%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GV PD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P+ VT
Sbjct: 377 LKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   G+L   
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+ +  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +  + KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWXGSKLLKEMQRDGYKP 414



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A+ LF+  L K
Sbjct: 176 TLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       + TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMIMKGLKPD-------KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 133/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 163/336 (48%), Gaps = 42/336 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+ +   + +  +CK+ R  EA R+   M   GL P  VTY  LI   C +G ++ A
Sbjct: 330 GMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDA 389

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D M ++GI  T   YN LI+         +A  +L EM EKG+ P + +Y+ LI G
Sbjct: 390 LCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAG 449

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR G+   A  LH EM   G+   + T+T+LI    K   M EA +LF+  +   ++P+
Sbjct: 450 LCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPN 509

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY--------------------- 223
            V FN +I+G+C  GN+ +AF L  +M    + PD  TY                     
Sbjct: 510 EVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVD 569

Query: 224 --------------NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                          TLM+G C++G++ E   + D+M+ RG+K D ISF  T + Y AL 
Sbjct: 570 DLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISF--TVIVYAAL- 626

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
               K  +G+    L REM  KG+ PD+  +  +I+
Sbjct: 627 ----KLHDGEKISVLFREMKEKGVKPDNVFHTCMID 658



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 159/304 (52%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+  D  TY + V G C+   LE A  M + M     VP+  + + ++DG   +G+
Sbjct: 256 MVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGH 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF     + + G++P     N LI +L  +R+  EA+ + + M  +G+ P+ +TY I
Sbjct: 316 IDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAI 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G    A  + D M  KGI+ T+  Y SLI    + +   +A  L    + KG
Sbjct: 376 LIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    ++ LI G C  G++  A  L +EM R  V  +  T+ TL+ G C+ G ++EA 
Sbjct: 436 LAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAA 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL D+M    + P+ +       T+N +I+G C+      A +L  +MV +G+TPD+ TY
Sbjct: 496 RLFDKMIDSSVVPNEV-------TFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTY 548

Query: 301 FSLI 304
            SLI
Sbjct: 549 RSLI 552



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 167/337 (49%), Gaps = 27/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  + YT+ + +SG CK+G ++EA+R+ ++M ++ +VP  VT+N +I+GYC  GN
Sbjct: 466 MARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGN 525

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   D+MV +G+ P   TY  LI  L +    ++A + + ++    +V +S +   
Sbjct: 526 VRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTT 585

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G+C+ G   + + + DEM  +G++  ++++T +++   K +   +   LF     KG
Sbjct: 586 LMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKG 645

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V    +ID H    NI +A +   +M      P+ VTY  L++  C+ G +  A+
Sbjct: 646 VKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQ 705

Query: 241 RLLDQMKRRGIKPDHISFN---------------------------PTRLTYNALIQGLC 273
            L ++M      P+  ++N                              +T+N LI+G C
Sbjct: 706 ILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKGFC 765

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           K  +   A +L++     G  PD  +Y ++I  +  V
Sbjct: 766 KAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKV 802



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G+    YT    +  + K  +   A  + ++M +         Y   I  YC   NL+
Sbjct: 153 SSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLD 212

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M  +G+  +A  YN+L++ L    +++EA ++   M E+GIV D +TY  L+
Sbjct: 213 GARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLV 272

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+CR    + A  + D+M+     P++ + + ++  L K+  + +A +L  +    GM+
Sbjct: 273 YGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMV 332

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++   NALID  C +     A  L + M    + P+EVTY  L+H  C++G +++A  +
Sbjct: 333 PNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCM 392

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M+ +GI+   ++  P    YN+LI G C++     A  LL EMV KG+ P   +Y  
Sbjct: 393 FDRMREKGIR---VTVYP----YNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSP 445

Query: 303 LIEGIA 308
           LI G+ 
Sbjct: 446 LIAGLC 451



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 152/304 (50%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD+YTY S +S +C      +A   ++ ++ N +V  + +  TL+ G+C +G 
Sbjct: 536 MVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGR 595

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L   +   DEM  +G+     ++ ++++  L      +   + +EM EKG+ PD++ +  
Sbjct: 596 LTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTC 655

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ + +  N  +A +  D+MI  G  P ++TYT LI  L K   +  A  L E  L   
Sbjct: 656 MIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGR 715

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP+   +N  +D     G +E+A  +L          + VT+NTL+ G C+ G+++ A 
Sbjct: 716 FLPNSFTYNCFLDFLANEGELEKA-KVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAI 774

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+      G  PD IS       Y+ +I  LCK  + + A +L  EM+ KG+ PD   Y
Sbjct: 775 DLMQNNTESGFFPDCIS-------YSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAY 827

Query: 301 FSLI 304
             LI
Sbjct: 828 NILI 831



 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 150/309 (48%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P + +Y   ++G+C++G L  A  +  +M  NG+     T+ TLI G+C  GN
Sbjct: 431 MVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGN 490

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D+M+   ++P   T+N++I        + +A  +  +M ++G+ PD+ TY  
Sbjct: 491 MDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRS 550

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C    A KA    D++ +  +     + T+L++   K+ R+ E   +++   A+G
Sbjct: 551 LISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARG 610

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D++ F  ++       + E+   L +EM    V PD V +  ++    ++  + +A 
Sbjct: 611 VKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQAL 670

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
              D+M   G  P+ +       TY  LI  LCK+     A+ L  EM+     P+  TY
Sbjct: 671 NCWDKMIADGCSPNVV-------TYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTY 723

Query: 301 FSLIEGIAS 309
              ++ +A+
Sbjct: 724 NCFLDFLAN 732



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 2/230 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +GV+PD+  +   +    KE  + +A    ++M  +G  P  VTY  LI+  C  G 
Sbjct: 641 MKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGY 700

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EM+    +P + TYN  + + L     +E   +L     +G + +++T+N 
Sbjct: 701 LSSAQILCEEMLVGRFLPNSFTYNCFL-DFLANEGELEKAKVLHATILEGCLANTVTFNT 759

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ G  + A  L       G  P  ++Y+++I  L K   + +A QL+   L KG
Sbjct: 760 LIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKG 819

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           + PDIV +N LI     +G  ++   +  +M  +K + D+   N    GR
Sbjct: 820 LKPDIVAYNILIRWCNIHGEFDKGLGIYSDMVNLK-YADDTPVNHKGSGR 868



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 7/237 (2%)

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           +  GI     T + ++  L+  R+   A D+  EM +     D   Y   I  YC   N 
Sbjct: 152 LSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNL 211

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
             A  L   M  KG++ + + Y  L++ L + NR++EA ++  + + +G++ D V +  L
Sbjct: 212 DGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTL 271

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           + G C    +E A  +  +M  +   P   + + ++ G  ++G +++A RL   +   G+
Sbjct: 272 VYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGM 331

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            P+  +        NALI  LCK++    AE L R M ++G+ P++ TY  LI  + 
Sbjct: 332 VPNLFAC-------NALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLC 381



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 10/194 (5%)

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           + Y R   A+ A  +    +  GI     T + ++F L K  +   A  LF+  +     
Sbjct: 133 SSYLRLRRARDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFP 192

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            D  ++ A I  +C   N++ A  LL  M+   V    V YN LM+G CR  +V EA  +
Sbjct: 193 LDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEV 252

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            + M  RGI  D +       TY  L+ G C+ +E ++A E+  +M+S    P   +   
Sbjct: 253 KNSMVERGIVADEV-------TYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSF 305

Query: 303 LIEGI---ASVDKA 313
           +++G+     +DKA
Sbjct: 306 MVDGLRKRGHIDKA 319


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 158/309 (51%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV+ D  TY   + G CK  +++EA ++ + M + G  P   T+N  +  YCN G 
Sbjct: 483 MVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGK 542

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      D+M  +G+ P   TY  +I      + M +A++ L E+ + G+ P+++ YN 
Sbjct: 543 VEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNA 602

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY R GN   A  + D M + GIQPT +TY SL++ +     + E   +F   + K 
Sbjct: 603 LIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKD 662

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   ++ +  +I G C  G I+ A    KEM    + P+++TY TLM    + G  EEA 
Sbjct: 663 IELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEAS 722

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L D+M   GI PD +S       YN LI G C+    D   E   EM S+ +  D  +Y
Sbjct: 723 KLFDEMVSLGIVPDSVS-------YNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSY 775

Query: 301 FSLIEGIAS 309
            + ++GI +
Sbjct: 776 NAFVDGITT 784



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 167/314 (53%), Gaps = 8/314 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           + V PD +TY + +  +C+ G ++ A  ML +++ +G+ PT VTYN L+D  C  G +E 
Sbjct: 205 KTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEE 264

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF  +  MV+  + P+  T+ +LI  L   ++  E   +L+EM   GI P+ + YN +I 
Sbjct: 265 AFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIG 324

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            +CR G+  +A  L DEM+ KGI+ T++TY  +   L K+  M  A+++ +  L  GM+ 
Sbjct: 325 WHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMV 384

Query: 184 DIVMFNALIDGHCT-NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
              +FN+++  H    G ++    L++EM    + P++      +   C+ GK EEA  +
Sbjct: 385 HCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEI 444

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             Q+  +G+  +         T NALI GLC+      A ++L+ MV+ G+  D  TY  
Sbjct: 445 WFQVLGKGLGVN-------VATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNI 497

Query: 303 LIEGIASVDKAAES 316
           +I+G     K  E+
Sbjct: 498 MIQGCCKASKMDEA 511



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 162/339 (47%), Gaps = 28/339 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R ++P+     + +  +CK G+ EEA+ +  Q+   GL     T N LI G C   N
Sbjct: 413 MLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNN 472

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV  G+     TYN++I       KM EA  +  +M ++G  PD  T+NI
Sbjct: 473 MKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNI 532

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++ YC  G  ++   L D+M  +G++P ++TY ++I    K   M +A++     +  G
Sbjct: 533 FLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNG 592

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++NALI G+  NGNI  A  +L  M    + P  VTYN+LM+  C  G VEE +
Sbjct: 593 LRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVK 652

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +  Q   + I+   I +                             P ++TY  L+   
Sbjct: 653 AVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAY 712

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            K+   + A +L  EMVS GI PD  +Y +LI G   VD
Sbjct: 713 SKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVD 751



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 166/370 (44%), Gaps = 64/370 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM---------------------------- 32
           ++  G+QP   TY   +  +CK GR+EEA R+                            
Sbjct: 237 LRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQ 296

Query: 33  -------LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                  L++M+  G+ P  V YN +I  +C KG+   A    DEMV +GI  T  TYNL
Sbjct: 297 FGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNL 356

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR-CGNAKKAFSLHDEMIHK 144
           +   L  E +M  A+ +L EM   G++     +N ++  + R  G       L  EM+ +
Sbjct: 357 IAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLAR 416

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            ++P     T+ I  L K  +  EA +++   L KG+  ++   NALI G C   N++ A
Sbjct: 417 FLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEA 476

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----- 259
             +LK M    V  D +TYN ++ G C+  K++EA +L D M +RG KPD  +FN     
Sbjct: 477 TKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHT 536

Query: 260 -----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                  P  +TY  +I G CK ++   A E L E++  G+ P+
Sbjct: 537 YCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPN 596

Query: 297 DNTYFSLIEG 306
              Y +LI G
Sbjct: 597 AVIYNALIGG 606



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 163/368 (44%), Gaps = 64/368 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M S+G++    TY      +CKEG +E A ++L++M   G++     +N+++  +     
Sbjct: 342 MVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTG 401

Query: 56  -------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
                                          C  G  E A     +++ +G+    +T N
Sbjct: 402 RLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSN 461

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            LIH L     M EA  +LK M   G+  D ITYNI+I G C+     +A  L D+MI +
Sbjct: 462 ALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKR 521

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P + T+   +       ++ E   L +   ++G+ PDIV +  +IDG+C   ++ +A
Sbjct: 522 GFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKA 581

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR-- 262
              L E+ +  + P+ V YN L+ G  R G + +A  +LD MK  GI+P  +++N     
Sbjct: 582 NEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYW 641

Query: 263 --------------------------LTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                     + Y  +IQG CK  + D A    +EM S+GI P+
Sbjct: 642 MCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPN 701

Query: 297 DNTYFSLI 304
             TY +L+
Sbjct: 702 KMTYTTLM 709



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 7/295 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK-QGIMPTAST 82
           G L  A+    ++   G  P+  T + L++     G L++A     EM   + + P   T
Sbjct: 154 GSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHT 213

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           Y  +I  L    ++  A  ML E+   GI P  +TYN+L++  C+ G  ++AF L   M+
Sbjct: 214 YTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMV 273

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
              ++P+++T+  LI  L++  +  E   + +     G+ P+ V++N +I  HC  G+  
Sbjct: 274 EGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCS 333

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A  L  EM    +    VTYN +    C++G++E A ++LD+M   G+      FN   
Sbjct: 334 EALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFN--- 390

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
              + +   L      DL   L+REM+++ + P+D    + I+ +    K  E++
Sbjct: 391 ---SVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAA 442


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 169/327 (51%), Gaps = 30/327 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + ++P+ Y+Y   V G+CK G   +A  +L  M+E+G+ P  VTY+TL+ GYC +G 
Sbjct: 357 MAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGK 416

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM++ G  P   T N+L+H L  E +  EA+D+L+ M E+G   D++T N 
Sbjct: 417 ILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNT 476

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-----------------------IQPTMLTYTSLI 157
           +ING C+ GN  KA  +   M  +G                         P  +TY ++I
Sbjct: 477 MINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATII 536

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K  R+ EA +     + K + PD ++F+  I  +C  G +  AF +LKEM++   +
Sbjct: 537 GGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCN 596

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
               TYN+L+ G   + ++ E   L+D+MK RGI P+         TYN +I  L +  +
Sbjct: 597 KSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPN-------VYTYNNIISCLSEGGK 649

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLI 304
              A  LL EM+ KGI+P+  T+  LI
Sbjct: 650 LKDATCLLDEMLQKGISPNIYTFRILI 676



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 176/376 (46%), Gaps = 68/376 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK---ENGLV-PTAVTYNTLIDGYC 56
           M+  G+ PD  T+   ++ +CK G++ EASR+   M+   E GL  P  VTYN +++G+C
Sbjct: 249 MREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFC 308

Query: 57  NKGNLEMAFSFRD----------------------------------EMVKQGIMPTAST 82
           ++G  E A +  D                                  EM ++ I P   +
Sbjct: 309 SEGMFEEARAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYS 368

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           YN+L+H L       +A  +L  M E G+ PD++TY+ L++GYCR G   +A  +  EMI
Sbjct: 369 YNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMI 428

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             G  P M T   L+  L K+ R  EA+ L +    +G   D V  N +I+G C  GN++
Sbjct: 429 QVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLD 488

Query: 203 RAFSLLKEM-----------------------DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +A  ++  M                       +  K  PD +TY T++ G C+ G+V+EA
Sbjct: 489 KAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEA 548

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           ++ L +M  + + PD        L ++  I   CK  +   A  +L+EM  KG      T
Sbjct: 549 KKKLLEMIGKKLSPDS-------LIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRT 601

Query: 300 YFSLIEGIASVDKAAE 315
           Y SLI+G+ S ++  E
Sbjct: 602 YNSLIQGLGSENQIFE 617



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 167/322 (51%), Gaps = 15/322 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +P+ ++ G  V G C+ G       +L++M+ +G +P  V YNT+I   C +G 
Sbjct: 179 MSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQ 238

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG---EKGIV-PDSI 116
              A    ++M + G+ P   T+N  I  L    +++EA  + ++M    E G+  P+++
Sbjct: 239 TVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTV 298

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN+++ G+C  G  ++A ++ D M +     ++ +Y   +  L +  +++EA  +    
Sbjct: 299 TYNLMLEGFCSEGMFEEARAIFDSMKNSETL-SLRSYNIWMLGLVRSGKLLEAHLILNEM 357

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             K + P++  +N L+ G C  G    A S+L  M    V PD VTY+TL+HG CR+GK+
Sbjct: 358 AEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKI 417

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA  +L +M + G  P+         T N L+  L K      AE+LL+ M  +G   D
Sbjct: 418 LEANYVLREMIQVGCFPN-------MYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLD 470

Query: 297 DNTYFSLIEGI---ASVDKAAE 315
           + T  ++I G+    ++DKA E
Sbjct: 471 NVTCNTMINGLCKAGNLDKAIE 492



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 144/336 (42%), Gaps = 33/336 (9%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGL--VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           S V  +   G LE A      +++      P    YN L      +  ++       +M 
Sbjct: 86  SLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMA 145

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
              + P   T+NLLI  L     +  A ++  +M EKG  P+  +  IL+ GYCR G   
Sbjct: 146 VAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHS 205

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
               L DEM   G  P  + Y ++I  L  + + +EA++L E     G+ PDIV FN  I
Sbjct: 206 HGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRI 265

Query: 193 DGHCTNGNIERAFSLLKEM---DRMKV-HPDEVTYNTLMHGRCRQGKVEEARRLLDQMK- 247
              C +G I  A  + ++M   + M +  P+ VTYN ++ G C +G  EEAR + D MK 
Sbjct: 266 AALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKN 325

Query: 248 -----------------RRG-IKPDHISFN--------PTRLTYNALIQGLCKNQEGDLA 281
                            R G +   H+  N        P   +YN L+ GLCK      A
Sbjct: 326 SETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDA 385

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
             +L  M   G+ PD  TY +L+ G     K  E++
Sbjct: 386 RSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEAN 421



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 127/258 (49%), Gaps = 9/258 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PDS TY + + G+CK GR++EA + L +M    L P ++ ++T I  YC +G L  AF  
Sbjct: 527 PDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRV 586

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM K+G   +  TYN LI  L  E ++ E   ++ EM E+GI P+  TYN +I+    
Sbjct: 587 LKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSE 646

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA----KGMLP 183
            G  K A  L DEM+ KGI P + T+  LI    K      A +LFE  L+    K  L 
Sbjct: 647 GGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLY 706

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
              MFN L+ G    G   +A  L +      +      Y  L+   C+ GK+++A  +L
Sbjct: 707 SF-MFNELLAG----GETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFIL 761

Query: 244 DQMKRRGIKPDHISFNPT 261
            +M  +    D  SF P 
Sbjct: 762 HKMMDKQYSFDPASFMPV 779



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 126/249 (50%), Gaps = 7/249 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PDS  + +F+   CK+G+L  A R+L++M++ G   +  TYN+LI G  ++  
Sbjct: 555 MIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQ 614

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +   +   DEM ++GI P   TYN +I  L    K+ +A  +L EM +KGI P+  T+ I
Sbjct: 615 IFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRI 674

Query: 121 LINGY---CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           LI  +   C  G A++ F +   +   G + ++  Y+ +   L      ++A +LFE  L
Sbjct: 675 LIGAFFKACDFGAAQELFEIALSLC--GHKESL--YSFMFNELLAGGETLKAKELFEAAL 730

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            + +     ++  LI+  C +G ++ A  +L +M   +   D  ++  ++    ++G   
Sbjct: 731 DRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKH 790

Query: 238 EARRLLDQM 246
            A    ++M
Sbjct: 791 AADEFAERM 799


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   G+L   
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+ +  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +  + KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYKP 414



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 175/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G ++ D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTLRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A+ LF+  L K
Sbjct: 176 TLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       + TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMIMKGLKPD-------KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 133/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 169/327 (51%), Gaps = 30/327 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + ++P+ Y+Y   V G+CK G   +A  +L  M+E+G+ P  VTY+TL+ GYC +G 
Sbjct: 357 MAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGK 416

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM++ G  P   T N+L+H L  E +  EA+D+L+ M E+G   D++T N 
Sbjct: 417 ILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNT 476

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-----------------------IQPTMLTYTSLI 157
           +ING C+ GN  KA  +   M  +G                         P  +TY ++I
Sbjct: 477 MINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATII 536

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K  R+ EA +     + K + PD ++F+  I  +C  G +  AF +LKEM++   +
Sbjct: 537 GGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCN 596

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
               TYN+L+ G   + ++ E   L+D+MK RGI P+         TYN +I  L +  +
Sbjct: 597 KSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPN-------VYTYNNIISCLSEGGK 649

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLI 304
              A  LL EM+ KGI+P+  T+  LI
Sbjct: 650 LKDATCLLDEMLQKGISPNIYTFRILI 676



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 176/376 (46%), Gaps = 68/376 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK---ENGLV-PTAVTYNTLIDGYC 56
           M+  G+ PD  T+   ++ +CK G++ EASR+   M+   E GL  P  VTYN +++G+C
Sbjct: 249 MREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFC 308

Query: 57  NKGNLEMAFSFRD----------------------------------EMVKQGIMPTAST 82
           ++G  E A +  D                                  EM ++ I P   +
Sbjct: 309 SEGMFEEARAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYS 368

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           YN+L+H L       +A  +L  M E G+ PD++TY+ L++GYCR G   +A  +  EMI
Sbjct: 369 YNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMI 428

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             G  P M T   L+  L K+ R  EA+ L +    +G   D V  N +I+G C  GN++
Sbjct: 429 QVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLD 488

Query: 203 RAFSLLKEM-----------------------DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +A  ++  M                       +  K  PD +TY T++ G C+ G+V+EA
Sbjct: 489 KAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEA 548

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           ++ L +M  + + PD        L ++  I   CK  +   A  +L+EM  KG      T
Sbjct: 549 KKKLLEMIGKKLSPDS-------LIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRT 601

Query: 300 YFSLIEGIASVDKAAE 315
           Y SLI+G+ S ++  E
Sbjct: 602 YNSLIQGLGSENQIFE 617



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 167/322 (51%), Gaps = 15/322 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +P+ ++ G  V G C+ G       +L++M+ +G +P  V YNT+I   C +G 
Sbjct: 179 MSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQ 238

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG---EKGIV-PDSI 116
              A    ++M + G+ P   T+N  I  L    +++EA  + ++M    E G+  P+++
Sbjct: 239 TVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTV 298

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN+++ G+C  G  ++A ++ D M +     ++ +Y   +  L +  +++EA  +    
Sbjct: 299 TYNLMLEGFCSEGMFEEARAIFDSMKNSETL-SLRSYNIWMLGLVRSGKLLEAHLILNEM 357

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             K + P++  +N L+ G C  G    A S+L  M    V PD VTY+TL+HG CR+GK+
Sbjct: 358 AEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKI 417

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA  +L +M + G  P+         T N L+  L K      AE+LL+ M  +G   D
Sbjct: 418 LEANYVLREMIQVGCFPN-------MYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLD 470

Query: 297 DNTYFSLIEGI---ASVDKAAE 315
           + T  ++I G+    ++DKA E
Sbjct: 471 NVTCNTMINGLCKAGNLDKAIE 492



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 144/336 (42%), Gaps = 33/336 (9%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGL--VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           S V  +   G LE A      +++      P    YN L      +  ++       +M 
Sbjct: 86  SLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMA 145

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
              + P   T+NLLI  L     +  A ++  +M EKG  P+  +  IL+ GYCR G   
Sbjct: 146 VARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHS 205

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
               L DEM   G  P  + Y ++I  L  + + +EA++L E     G+ PDIV FN  I
Sbjct: 206 HGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRI 265

Query: 193 DGHCTNGNIERAFSLLKEM---DRMKV-HPDEVTYNTLMHGRCRQGKVEEARRLLDQMK- 247
              C +G I  A  + ++M   + M +  P+ VTYN ++ G C +G  EEAR + D MK 
Sbjct: 266 AALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKN 325

Query: 248 -----------------RRG-IKPDHISFN--------PTRLTYNALIQGLCKNQEGDLA 281
                            R G +   H+  N        P   +YN L+ GLCK      A
Sbjct: 326 SETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDA 385

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
             +L  M   G+ PD  TY +L+ G     K  E++
Sbjct: 386 RSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEAN 421



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 127/258 (49%), Gaps = 9/258 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PDS TY + + G+CK GR++EA + L +M    L P ++ ++T I  YC +G L  AF  
Sbjct: 527 PDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRV 586

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM K+G   +  TYN LI  L  E ++ E   ++ EM E+GI P+  TYN +I+    
Sbjct: 587 LKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSE 646

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA----KGMLP 183
            G  K A  L DEM+ KGI P + T+  LI    K      A +LFE  L+    K  L 
Sbjct: 647 GGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLY 706

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
              MFN L+ G    G   +A  L +      +      Y  L+   C+ GK+++A  +L
Sbjct: 707 SF-MFNELLAG----GETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFIL 761

Query: 244 DQMKRRGIKPDHISFNPT 261
            +M  +    D  SF P 
Sbjct: 762 HKMMDKQYSFDPASFMPV 779



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 126/249 (50%), Gaps = 7/249 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PDS  + +F+   CK+G+L  A R+L++M++ G   +  TYN+LI G  ++  
Sbjct: 555 MIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQ 614

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +   +   DEM ++GI P   TYN +I  L    K+ +A  +L EM +KGI P+  T+ I
Sbjct: 615 IFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRI 674

Query: 121 LINGY---CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           LI  +   C  G A++ F +   +   G + ++  Y+ +   L      ++A +LFE  L
Sbjct: 675 LIGAFFKACDFGAAQELFEIALSLC--GHKESL--YSFMFNELLAGGETLKAKELFEAAL 730

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            + +     ++  LI+  C +G ++ A  +L +M   +   D  ++  ++    ++G   
Sbjct: 731 DRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKH 790

Query: 238 EARRLLDQM 246
            A    ++M
Sbjct: 791 AADEFAERM 799


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 171/343 (49%), Gaps = 32/343 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD++T+ S + G C+  +L+ A  + ++M   G    AV+Y  LI+G+C  G 
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGR 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     E+ ++   P   T+  L+  L   R+  E   ML++M E G  P +  Y  
Sbjct: 215 VDEAL----ELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAA 270

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +CR   A++A  + +EM   G+ P  +T T+++    ++ RM  A ++FE+   KG
Sbjct: 271 LVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKG 330

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  +NA++ G C  G + +A +LL +M    V PD VTYN L+ G+C  G +E A 
Sbjct: 331 CEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAF 390

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           RLL  M+  G+  D  ++N                            P  +T+N +I GL
Sbjct: 391 RLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           CK  + D+A   L +MVS G  PD  TY   IE +     + E
Sbjct: 451 CKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSRE 493



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 160/318 (50%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G +P +  Y + V   C+E + EEA +ML +M +NGLVP AVT   +++ YC +G 
Sbjct: 256 MKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGR 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M  +G  P   TYN ++       K+ +A  +L +M E G+ PD +TYN+
Sbjct: 316 MSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNL 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G+ + AF L   M   G+     TY  LI  L K  ++ EA  LF+    +G
Sbjct: 376 LIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V FN +I+G C  G  + A + L++M      PD  TY+  +   C+     E  
Sbjct: 436 IRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGL 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             +D+M ++ +KP  ++       Y  +I  L K +   LA  +  +MVS G +PD  TY
Sbjct: 496 SFIDEMLQKDVKPSTVN-------YTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTY 548

Query: 301 FSLIEGIASVDKAAESSN 318
            + +    +  +  E+ N
Sbjct: 549 TTSVRAYCNEGRLHEAEN 566



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G +P+ +TY + V G C  G++ +A  +L+QM+E G+ P  VTYN LI G C  G+
Sbjct: 326 MKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGH 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF     M   G+     TYN+LI  L    K+ EA  +   +  +GI P+S+T+N 
Sbjct: 386 IESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNT 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G    A +  ++M+  G  P   TY+  I  L K     E     +  L K 
Sbjct: 446 VINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKD 505

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  +ID      N   A  +  +M  +   PD VTY T +   C +G++ EA 
Sbjct: 506 VKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAE 565

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +MK+ GI  D ++       YN LI G     + D A  +L+ M      P+  T+
Sbjct: 566 NVVMEMKKGGIIVDAMA-------YNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTF 618

Query: 301 F 301
           F
Sbjct: 619 F 619



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 153/388 (39%), Gaps = 79/388 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RG++P+S T+ + ++G+CK G+ + A   LE+M   G  P   TY+  I+  C    
Sbjct: 431 LEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKG 490

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER-------------------------- 94
                SF DEM+++ + P+   Y ++I  L  ER                          
Sbjct: 491 SREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTT 550

Query: 95  ---------KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                    ++ EA++++ EM + GI+ D++ YN LI+G+   G    A ++   M    
Sbjct: 551 SVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVA 610

Query: 146 IQPTMLTY-------------TSLIFVLSKQNRMIEADQLFENF--LAKGMLPDIV-MFN 189
             P   T+               +    +   + IE   +FE F  + K  +P     + 
Sbjct: 611 SMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYL 670

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           A+++G      ++   SL+  M    +  +E  Y +L++  C+     +A  LL  M   
Sbjct: 671 AILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGH 730

Query: 250 GIKPDHISF----------------------------NPTRLTYNALIQGLCKNQEGDLA 281
           G  P+ IS+                            N   + +  +I GL +    D+ 
Sbjct: 731 GFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMC 790

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIAS 309
            +++  +      P D TY  L E +++
Sbjct: 791 HDMISILEQMKCKPSDETYAMLTEELST 818



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           T+  L+  + R         L   M H G   PT  TY +LI  L ++  +  A +    
Sbjct: 95  TFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSL 154

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            +  G  PD   FN+LI G+C    ++ A  L  +M       D V+Y  L+ G C  G+
Sbjct: 155 MVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGR 214

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           V+EA  L  ++++           P   T+ AL++GLC  + G+    +L++M   G  P
Sbjct: 215 VDEALELFRELEQ-----------PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRP 263

Query: 296 DDNTYFSLIEGIASVDKAAES 316
               Y +L++      KA E+
Sbjct: 264 ATRAYAALVDLWCREQKAEEA 284


>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 373

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 158/295 (53%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   DS TYG  V G CK G + ++ R+L   +E G V  A  Y+ +I+G C +  
Sbjct: 85  MTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGIAEEKGGVLDAFAYSAMINGLCKEAK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+  +   K  +A  + +EMG     P  +TYN 
Sbjct: 145 LDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG +P ++TY+ L+  L + +++  A QL+   ++ G
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+ M N LI G C+ G  + A  L  +M+R    P+ VT+NTLM G  + G +  A 
Sbjct: 265 LKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD +S+N T       ++GLC       A   L++ ++K I P
Sbjct: 325 GIWARILRNGLQPDIVSYNIT-------LKGLCSCSRISFAILFLQDALAKKIAP 372



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 41/291 (14%)

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG-------- 107
           C  G+++ A     EM +  + P A  YN +++      ++ +  ++ + MG        
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREDSQNVV 60

Query: 108 --------------------------EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
                                     + G V DS TY IL++G+C+ G   K+  +    
Sbjct: 61  SFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGIA 120

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             KG       Y+++I  L K+ ++ EA  +    +  G  P+  ++N LI+G       
Sbjct: 121 EEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKF 180

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           + A  + +EM      P  VTYNTL++G C+  +  EA  L+ +M  +G K       P 
Sbjct: 181 DDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWK-------PC 233

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            +TY+ L++GLC+  + ++A +L  +++S G+ PD      LI G+ SV K
Sbjct: 234 VITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGK 284



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 35/184 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S    P   TY + ++G+CK  R  EA  ++++M E G  P  +TY+ L+ G C    
Sbjct: 190 MGSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHK 249

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           +EMA    ++++  G+ P     N+LIH L                              
Sbjct: 250 VEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNT 309

Query: 91  LMERKMVEAD-----DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LME    + D      +   +   G+ PD ++YNI + G C C     A     + + K 
Sbjct: 310 LMEGFYKDGDIRNALGIWARILRNGLQPDIVSYNITLKGLCSCSRISFAILFLQDALAKK 369

Query: 146 IQPT 149
           I P+
Sbjct: 370 IAPS 373


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 169/362 (46%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG------ 54
           M   G  P    + S V   C  G    A ++L++M + G +P  V YN LI        
Sbjct: 363 MMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKD 422

Query: 55  -----------------------------------YCNKGNLEMAFSFRDEMVKQGIMPT 79
                                               C+ G  E AFS   EM+ QG +P 
Sbjct: 423 SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 482

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            STY+ +++ L    KM  A  + +EM   G+V D  TY I+++ +C+ G  ++A    +
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM   G  P ++TYT+LI    K  ++  A++LFE  L++G LP+IV ++ALIDGHC  G
Sbjct: 543 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAG 602

Query: 200 NIERAFSL----------------LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +E+A  +                 K+ D     P+ VTY  L+ G C+  +VEEAR+LL
Sbjct: 603 QVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL 662

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M   G +P+ I        Y+ALI GLCK  + D A+E+  EM   G      TY SL
Sbjct: 663 DAMSMEGCEPNQI-------VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSL 715

Query: 304 IE 305
           I+
Sbjct: 716 ID 717



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 160/332 (48%), Gaps = 23/332 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  +     SF   +C  G+ E+A  ++ +M   G +P   TY+ +++  CN   
Sbjct: 439 MLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASK 498

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E+AF   +EM + G++    TY +++        + +A     EM E G  P+ +TY  
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y +      A  L + M+ +G  P ++TY++LI    K  ++ +A Q+FE      
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618

Query: 181 MLPD----------------IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            +PD                +V + AL+DG C +  +E A  LL  M      P+++ Y+
Sbjct: 619 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 678

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L+ G C+ GK++EA+ +  +M   G       F  T  TY++LI    K +  DLA ++
Sbjct: 679 ALIDGLCKVGKLDEAQEVKTEMSEHG-------FPATLYTYSSLIDRYFKVKRQDLASKV 731

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L +M+     P+   Y  +I+G+  V K  E+
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 763



 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 32/340 (9%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TYG+ + G CK  R+EEA ++L+ M   G  P  + Y+ LIDG C  G L+ A  
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
            + EM + G   T  TY+ LI      ++   A  +L +M E    P+ + Y  +I+G C
Sbjct: 696 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 755

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A+ L   M  KG QP ++TYT++I       ++    +L E   +KG+ P+ V
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LID  C NG ++ A +LL+EM +         Y  ++ G  ++    E+  LLD++
Sbjct: 816 TYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEI 873

Query: 247 KRRGIKP--------------------------DHISFNPTRL----TYNALIQGLCKNQ 276
            +    P                          +  +F+ T +    TYN+LI+ LC   
Sbjct: 874 GQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLAN 933

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + + A +L  EM  KG+ P+  ++ SLI+G+    K +E+
Sbjct: 934 KVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 149/317 (47%), Gaps = 16/317 (5%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+  Y   +SG+C+    EEA   L +M+    +P  VTY+TL+ G  NK  L      
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC- 126
            + M+ +G  P+   +N L+H          A  +LK+M + G +P  + YNILI   C 
Sbjct: 360 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICG 419

Query: 127 -----RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
                 C     A   + EM+  G+    +  +S    L    +  +A  +    + +G 
Sbjct: 420 DKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGF 479

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD   ++ +++  C    +E AF L +EM R  +  D  TY  ++   C+ G +E+AR+
Sbjct: 480 IPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARK 539

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
             ++M+  G  P+ +       TY ALI    K ++   A EL   M+S+G  P+  TY 
Sbjct: 540 WFNEMREVGCTPNVV-------TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592

Query: 302 SLIEG---IASVDKAAE 315
           +LI+G      V+KA +
Sbjct: 593 ALIDGHCKAGQVEKACQ 609



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 158/358 (44%), Gaps = 46/358 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM----------------KENGLVPT 44
           M S G  P+  TY + + G CK G++E+A ++ E+M                 +N   P 
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
            VTY  L+DG+C    +E A    D M  +G  P    Y+ LI  L    K+ EA ++  
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 698

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           EM E G      TY+ LI+ Y +      A  +  +M+     P ++ YT +I  L K  
Sbjct: 699 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           +  EA +L +    KG  P++V + A+IDG    G IE    LL+ M    V P+ VTY 
Sbjct: 759 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS--------FN----------------- 259
            L+   C+ G ++ A  LL++MK+    P H +        FN                 
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHW-PTHTAGYRKVIEGFNKEFIESLGLLDEIGQDD 877

Query: 260 --PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD--NTYFSLIEGIASVDKA 313
             P    Y  LI  L K Q  ++A  LL E+ +   T  D  +TY SLIE +   +K 
Sbjct: 878 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKV 935



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 10/225 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G QP+  TY + + G    G++E    +LE+M   G+ P  VTY  LID  C  G 
Sbjct: 770 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGA 829

Query: 61  LEMAFSFRDEMVKQGIMPTAST-YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L++A +  +EM KQ   PT +  Y  +I      ++ +E+  +L E+G+    P    Y 
Sbjct: 830 LDVAHNLLEEM-KQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYR 886

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTML----TYTSLIFVLSKQNRMIEADQLFEN 175
           +LI+   +    + A  L +E+       T++    TY SLI  L   N++  A QLF  
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSE 944

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
              KG++P++  F +LI G   N  I  A  LL  +  M++   E
Sbjct: 945 MTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMEIQWIE 989



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 137/314 (43%), Gaps = 20/314 (6%)

Query: 9   DSYTYGSFVSGM----CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           D   +G F++ +    C+ G    A   L ++K+    P+  TYN LI  +     L+ A
Sbjct: 195 DKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSA 254

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM    +     T     + L    K  EA   L  +  +  VPD++ Y  LI+G
Sbjct: 255 SLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISG 311

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     ++A    + M      P ++TY++L+     + ++    ++    + +G  P 
Sbjct: 312 LCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPS 371

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK------VEE 238
             +FN+L+  +CT+G+   A+ LLK+M +    P  V YN L+   C          ++ 
Sbjct: 372 PKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDL 431

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A +   +M   G+  + I+        ++  + LC   + + A  ++REM+ +G  PD +
Sbjct: 432 AEKAYSEMLAAGVVLNKINV-------SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTS 484

Query: 299 TYFSLIEGIASVDK 312
           TY  ++  + +  K
Sbjct: 485 TYSKVLNYLCNASK 498



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 129/314 (41%), Gaps = 16/314 (5%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +  +  Y + V  + ++   +     L+Q++++         N L+  +C  G+  +A
Sbjct: 160 GYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIA 219

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 +      P+ STYN LI   L   ++  A  + +EM    +  D  T       
Sbjct: 220 LEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYS 279

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  ++A +L +    +   P  + YT LI  L + +   EA        A   LP+
Sbjct: 280 LCKVGKWREALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPN 336

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ L+ G      + R   +L  M     +P    +N+L+H  C  G    A +LL 
Sbjct: 337 VVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 396

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG------DLAEELLREMVSKGITPDDN 298
           +M + G  P ++        YN LI  +C +++       DLAE+   EM++ G+  +  
Sbjct: 397 KMVKCGHMPGYV-------VYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449

Query: 299 TYFSLIEGIASVDK 312
              S    + S  K
Sbjct: 450 NVSSFTRCLCSAGK 463



 Score = 38.1 bits (87), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N L+   CR G    A   L ++K          F P+R TYN LIQ   K    D A  
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLK-------DFRFRPSRSTYNCLIQAFLKADRLDSASL 256

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + REM    +  D  T       +  V K  E+
Sbjct: 257 IHREMSLANLRMDGFTLRCFAYSLCKVGKWREA 289


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 162/342 (47%), Gaps = 28/342 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P ++T    +  +C  G  E+A R+   MK  G  P   TY  LI G C  G L++A
Sbjct: 485 GILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVA 544

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M + G+ P   TYN LI+ L+  R++  A  +L  MG  G+  + +TYN +I G
Sbjct: 545 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKG 604

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G+ KKA  + + M+ +G    ++TY ++I           A ++ +     G  PD
Sbjct: 605 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 664

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LI G C    +E AF L  EM    + P+EVTY  L+ G C+  K++ A  LL+
Sbjct: 665 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 724

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            MKR G +P+  ++N                            P  +TY A+I GLCKN 
Sbjct: 725 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 784

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              LA E+  +M+ +G  P+  TY SLI  +    K  E+ N
Sbjct: 785 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAEN 826



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 163/321 (50%), Gaps = 17/321 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G +PD ++Y   + G CK  ++E A  +  +M ++GL P  VTY  LIDGYC    
Sbjct: 656 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 715

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M + G  P   TYN+LIH L  +     A+++ K M E+GI P+ +TY  
Sbjct: 716 LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTA 775

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+ G+   A  + ++MI +G  P +LTY+SLI  L ++ ++ EA+ LF      G
Sbjct: 776 MIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 835

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + +  +I+ +  +G +E AF+ L  M +    P   TY  L+ G   +  + + R
Sbjct: 836 LIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR 895

Query: 241 --RLLDQMKR-----RGIKPDHISFNPTRL----------TYNALIQGLCKNQEGDLAEE 283
              L D +       +    D +S    +L            NAL+  L        A E
Sbjct: 896 LAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANE 955

Query: 284 LLREMVSKGITPDDNTYFSLI 304
           LL  M+S+G+ PD   Y SL+
Sbjct: 956 LLGSMISQGLCPDQEAYNSLL 976



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  +  TY   + G C  G  ++A  ++  M + G     VTYNT+I GYC+ GN
Sbjct: 586 MGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 645

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    D M   G  P   +Y  LI       KM  A  +  EM + G+ P+ +TY  
Sbjct: 646 TTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTA 705

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+      A SL + M   G +P + TY  LI  L+KQN    A++L +  + +G
Sbjct: 706 LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 765

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V + A+IDG C NG+   A  +  +M      P+ +TY++L+    ++GKVEEA 
Sbjct: 766 IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE 825

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++R G+ PD I       TY  +I+    + + + A   L  M+  G  P   TY
Sbjct: 826 NLFAELERHGLIPDEI-------TYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTY 878

Query: 301 FSLIEGI 307
             LI+G+
Sbjct: 879 GVLIKGL 885



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 170/347 (48%), Gaps = 42/347 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GVQP+   Y + ++ +CK+G + +A  +++++ E+ + P   TY ++I G+C K +
Sbjct: 376 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 435

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M K+G  P   TY+ LI+ L    ++ EA D+++EM   GI+P + T   
Sbjct: 436 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 495

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C  G  + A+ L  +M +KG +P + TYT+LI  L     +  A  LF      G
Sbjct: 496 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 555

Query: 181 MLPDIVMFNALID-----------------------------------GHCTNGNIERAF 205
           + P+ V +NALI+                                   G+C  G+ ++A 
Sbjct: 556 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAM 615

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            ++  M +     + VTYNT++ G C  G    A R+LD M+  G KPD  S       Y
Sbjct: 616 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS-------Y 668

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             LI G CK  + + A  L  EMV  G+ P++ TY +LI+G    +K
Sbjct: 669 TELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 715



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 146/339 (43%), Gaps = 47/339 (13%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            MK  G +P+  TY   + G+ K+     A  + + M E G+ P  VTY  +IDG C  G+
Sbjct: 726  MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 785

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              +A    ++M++QG +P   TY+ LI  L  E K+ EA+++  E+   G++PD ITY  
Sbjct: 786  TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 845

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +I  Y   G  + AF+    MI  G QPT+ TY  LI  L  +N  + ADQ         
Sbjct: 846  MIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRL------A 897

Query: 181  MLPDIV--------------------------------MFNALIDGHCTNGNIERAFSLL 208
             LPD+V                                + NAL+    T G    A  LL
Sbjct: 898  ALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELL 957

Query: 209  KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
              M    + PD+  YN+L+    R   V+ A  +   M  +G +   +  N     Y  L
Sbjct: 958  GSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCE---VHLN----GYKEL 1010

Query: 269  IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            I  LC+      A      M+ +   PDD     LI+G+
Sbjct: 1011 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGL 1049



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 7/275 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
            L+ + ++GL      Y+ L+      G           M+ +G+ P    YN +I+ L 
Sbjct: 337 FLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALC 396

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
            +  + +A+ ++K++ E  + PD+ TY  +I G+CR  +   A  + ++M  +G +P  +
Sbjct: 397 KDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTV 456

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY++LI  L    R+ EA  L    +  G+LP        I   C  G  E A+ L  +M
Sbjct: 457 TYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM 516

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                 P+  TY  L+ G C  G ++ A  L  +M R G+ P+ +       TYNALI  
Sbjct: 517 KNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTV-------TYNALINI 569

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           L +N+    A  +L  M   G+  +  TY  +I+G
Sbjct: 570 LVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKG 604



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 7/254 (2%)

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           LI    +K  +    SF D + + G+      Y+ L+  L          D    M  +G
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           + P+ + YN +IN  C+ GN   A ++  ++    + P   TYTS+I    +++ +  A 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 440

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           Q+F     +G  P+ V ++ LI+G C +G +  AF L++EM    + P   T    +   
Sbjct: 441 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 500

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C  G  E+A RL   MK +G +P+         TY ALI GLC +    +A  L   M  
Sbjct: 501 CDMGCYEDAWRLFVDMKNKGCEPN-------VYTYTALISGLCVSGLLKVAIGLFHRMSR 553

Query: 291 KGITPDDNTYFSLI 304
            G+ P+  TY +LI
Sbjct: 554 DGVFPNTVTYNALI 567



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 20/301 (6%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  +G  P+  TY S +  + +EG++EEA  +  +++ +GL+P  +TY  +I+ Y   G 
Sbjct: 796  MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 855

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD-SITYN 119
            +E AF+F   M+K G  PT  TY +LI  L  + + + AD  L  + +  +VP+ S  Y 
Sbjct: 856  VEHAFNFLGRMIKAGCQPTLWTYGVLIKGL--KNEYLLADQRLAALPD--VVPNCSFGYQ 911

Query: 120  ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
                      +AK A       +  G+  ++    +L+  LS   R  EA++L  + +++
Sbjct: 912  TTDQDAVSVMSAKLA------ELDPGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQ 963

Query: 180  GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            G+ PD   +N+L+       N++ A  + K M           Y  L+   C+  + +EA
Sbjct: 964  GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEA 1023

Query: 240  RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            R   + M  R       ++NP  +    LI GL ++   DL  E L  M ++   P  + 
Sbjct: 1024 RITFENMLMR-------TWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHI 1076

Query: 300  Y 300
            Y
Sbjct: 1077 Y 1077



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 99/250 (39%), Gaps = 24/250 (9%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK-- 58
            ++  G+ PD  TY   +      G++E A   L +M + G  PT  TY  LI G  N+  
Sbjct: 831  LERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYL 890

Query: 59   -GNLEMA--------FSFRDEMVKQGIMPTAS-------------TYNLLIHELLMERKM 96
              +  +A         SF  +   Q  +   S               N L+  L    + 
Sbjct: 891  LADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRW 950

Query: 97   VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
             EA+++L  M  +G+ PD   YN L+    R  N   A  +   M  +G +  +  Y  L
Sbjct: 951  FEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKEL 1010

Query: 157  IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
            I  L + +R  EA   FEN L +   PD V+   LIDG   +G  +     L  M+  + 
Sbjct: 1011 ICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRY 1070

Query: 217  HPDEVTYNTL 226
             P    Y  L
Sbjct: 1071 MPSFHIYTIL 1080



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           V P+ + YN +++  C+ G V +A  ++ ++    + PD         TY ++I G C+ 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPD-------TFTYTSMILGHCRK 433

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + D A ++  +M  +G  P+  TY +LI G+    +  E+
Sbjct: 434 HDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEA 474



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 59/149 (39%)

Query: 15   SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74
            + VS +   GR  EA+ +L  M   GL P    YN+L+       N+++A      M  Q
Sbjct: 939  ALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQ 998

Query: 75   GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134
            G     + Y  LI  L    +  EA    + M  +   PD +   +LI+G  R G     
Sbjct: 999  GCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLC 1058

Query: 135  FSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
                  M  +   P+   YT L    SK+
Sbjct: 1059 MEFLHIMETRRYMPSFHIYTILAREASKK 1087


>gi|255661002|gb|ACU25670.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 376

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 158/295 (53%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK      DS T+G  V G CK G + ++  +LE  +  G V  A  Y+ +I+G C + N
Sbjct: 85  MKKSDFVEDSITFGILVHGFCKNGYINKSLHVLEMAZXKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    ++M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDKAVXVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGXVRCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  +M+ KG+ P+++TY+ L+  L   +++  A QL+   ++KG
Sbjct: 205 LINGLCKNEMFGEAYDLVKDMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G  + A SL  +M+R K  P+ VT+NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWKCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  +  R G++PD IS+N T       ++GLC       A   L + V K I P
Sbjct: 325 VIWARXLRNGLEPDIISYNIT-------LKGLCSCNRICDAILFLHDAVRKKIVP 372



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 155/293 (52%), Gaps = 8/293 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++   R+ +++ E+ + P AV +N +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGPERVYKEIVESKVSPDAVVHNAMLNGYFRVAKIKDCFELWEMMGNEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L  + K+ E   + + M +   V DSIT+ IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDKGKVDEVISIWELMKKSDFVEDSITFGILVHGFCKNGYINKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  + +A  +  + +  G  P+  ++N LI+G      
Sbjct: 120 AZXKGGVLDAFAYSAMINGLCKEANLDKAVXVLNDMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  ++  P  +TYNTL++G C+     EA  L+  M  +G+       NP
Sbjct: 180 FEDAIRVFREMGXVRCSPTIITYNTLINGLCKNEMFGEAYDLVKDMLEKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           + +TY+ L++GLC + + + A +L  +++SKG  PD   +  LI G+ SV K 
Sbjct: 233 SVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKT 285



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 149/305 (48%), Gaps = 7/305 (2%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           ++   + G+  +G+++E   + E MK++  V  ++T+  L+ G+C  G +  +    +  
Sbjct: 61  SFNIMMRGLFDKGKVDEVISIWELMKKSDFVEDSITFGILVHGFCKNGYINKSLHVLEMA 120

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             +G +  A  Y+ +I+ L  E  + +A  +L +M + G  P++  YN LING       
Sbjct: 121 ZXKGGVLDAFAYSAMINGLCKEANLDKAVXVLNDMIKSGCKPNAHVYNTLINGLVGASKF 180

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           + A  +  EM      PT++TY +LI  L K     EA  L ++ L KG+ P ++ ++ L
Sbjct: 181 EDAIRVFREMGXVRCSPTIITYNTLINGLCKNEMFGEAYDLVKDMLEKGLNPSVITYSML 240

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           + G C +  +ERA  L  ++      PD   +N L+HG C  GK + A  L   M R   
Sbjct: 241 MKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWKC 300

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            P+ +       T+N L++G  K+ +   A  +    +  G+ PD  +Y   ++G+ S +
Sbjct: 301 APNLV-------THNTLMEGFYKDGDIRNALVIWARXLRNGLEPDIISYNITLKGLCSCN 353

Query: 312 KAAES 316
           +  ++
Sbjct: 354 RICDA 358



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 116/222 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGXVRCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    +M+++G+ P+  TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYDLVKDMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++T+ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKTQLALSLYFDMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARXLRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +  R K+ P ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRICDAILFLHDAVRKKIVPTKIT 376


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 163/326 (50%), Gaps = 30/326 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEE------ASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           G QP    Y   + G+C    L        A R   +M E G+V   V         C  
Sbjct: 41  GYQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCI 100

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G  E A++   EM+ +G +P +STY+ +I  L    K+ +A  + +EM   GI PD  TY
Sbjct: 101 GKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTY 160

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             L++ +C+ G  ++A +  DEM   G  P ++TYT+LI    K  ++  A+++FE  L+
Sbjct: 161 TTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLS 220

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV-----------------HPDEV 221
            G +P+IV + ALIDGHC  G  E+A  +   M   KV                  P+ V
Sbjct: 221 NGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVV 280

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TY  L+ G C+  KV+EAR LL+ M   G +P+ I        Y+ALI G CK  + D A
Sbjct: 281 TYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQI-------IYDALIDGFCKVGKLDEA 333

Query: 282 EELLREMVSKGITPDDNTYFSLIEGI 307
           +E+  +M+  G +P+  TY SLI+ +
Sbjct: 334 QEVFTKMLGHGCSPNVYTYSSLIDKL 359



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 171/356 (48%), Gaps = 59/356 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PDS TY   +  +C   ++E+A ++ ++MK NG+ P   TY TL+D +C  G 
Sbjct: 113 MMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGL 172

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A ++ DEM + G  P   TY  LIH  L  RK+  A+++ + M   G VP+ +TY  
Sbjct: 173 IEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTA 232

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI-----------------QPTMLTYTSLIFVLSKQ 163
           LI+G+C+ G  +KA  ++  M +  +                 +P ++TY +L+  L K 
Sbjct: 233 LIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKA 292

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER-------------------- 203
           +++ EA  L E    +G  P+ ++++ALIDG C  G ++                     
Sbjct: 293 HKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTY 352

Query: 204 ---------------AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
                          A  +L +M      P+ V Y  ++ G C+ GK +EA RL+  M+ 
Sbjct: 353 SSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEE 412

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +G  P+ +       TY A+I G  K    D   ELL+ M SKG  P+  TY  LI
Sbjct: 413 KGCYPNVV-------TYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLI 461



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 24/333 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  +     +F   +C  G+ E+A  ++ +M   G +P + TY+ +I   CN   
Sbjct: 78  MLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASK 137

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF    EM + GI P   TY  L+        + +A +   EM + G  P+ +TY  
Sbjct: 138 VEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTA 197

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF---- 176
           LI+ Y +     +A  + + M+  G  P ++TYT+LI    K     +A Q++       
Sbjct: 198 LIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDK 257

Query: 177 -----------LAKGML--PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
                      +    L  P++V + AL+DG C    ++ A  LL+ M      P+++ Y
Sbjct: 258 VDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIY 317

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           + L+ G C+ GK++EA+ +  +M   G  P+         TY++LI  L K++  DLA +
Sbjct: 318 DALIDGFCKVGKLDEAQEVFTKMLGHGCSPN-------VYTYSSLIDKLFKDKRLDLALK 370

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +L +M+     P+   Y  +++G+  V K  E+
Sbjct: 371 VLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEA 403



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 148/310 (47%), Gaps = 13/310 (4%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TYG+ V G+CK  +++EA  +LE M   G  P  + Y+ LIDG+C  G L+ A  
Sbjct: 276 EPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQE 335

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M+  G  P   TY+ LI +L  ++++  A  +L +M E    P+ + Y  +++G C
Sbjct: 336 VFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLC 395

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A+ L   M  KG  P ++TYT++I    K  R+    +L +   +KG  P+ +
Sbjct: 396 KVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFI 455

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LI+  C  G ++ A  LL+EM +         Y  ++ G   +     +  LL ++
Sbjct: 456 TYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHE--FVASLGLLAEL 513

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G         P    Y  LI    K    ++A EL  E+ S       NTY SLIE 
Sbjct: 514 SEDGSV-------PILPVYKLLIDNFIKAGRLEMALELHEELSSFS-AAYQNTYVSLIES 565

Query: 307 I---ASVDKA 313
           +     VDKA
Sbjct: 566 LTLACKVDKA 575



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 19/245 (7%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC-- 128
           M+ +G  P+   +N L+H          A  +LK+M   G  P  + YNILI G C    
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 129 -------GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
                  G A++A+   +EM+  G+    +   +    L    +  +A  +    ++KG 
Sbjct: 62  LPSMEVIGLAERAY---NEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGF 118

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD   ++ +I   C    +E+AF L +EM R  + PD  TY TL+   C+ G +E+AR 
Sbjct: 119 IPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARN 178

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
             D+M++ G  P+ +       TY ALI    K ++   A E+   M+S G  P+  TY 
Sbjct: 179 WFDEMQQDGCAPNVV-------TYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYT 231

Query: 302 SLIEG 306
           +LI+G
Sbjct: 232 ALIDG 236



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 140/317 (44%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+   Y + + G CK G+L+EA  +  +M  +G  P   TY++LID       
Sbjct: 305 MSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKR 364

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L++A     +M++    P    Y  ++  L    K  EA  ++  M EKG  P+ +TY  
Sbjct: 365 LDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTA 424

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G   +   L   M  KG  P  +TY  LI        + +A +L E      
Sbjct: 425 MIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTY 484

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I M+  +I+G   +     +  LL E+      P    Y  L+    + G++E A 
Sbjct: 485 WPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMAL 542

Query: 241 RLLDQMKRRGIKPDHISFNPT-RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L +++          SF+   + TY +LI+ L    + D A +L  +M  +G  P+ + 
Sbjct: 543 ELHEELS---------SFSAAYQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSM 593

Query: 300 YFSLIEGIASVDKAAES 316
              LI+G+  V K  E+
Sbjct: 594 LVCLIKGLLRVGKWEEA 610



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 110/252 (43%), Gaps = 38/252 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+   Y   V G+CK G+ +EA R++  M+E G  P  VTY  +IDG+   G 
Sbjct: 375 MLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGR 434

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------HELL-------------MERK 95
           ++        M  +G  P   TY +LI            H+LL             M RK
Sbjct: 435 VDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRK 494

Query: 96  MVEADD--------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM--IHKG 145
           ++E           +L E+ E G VP    Y +LI+ + + G  + A  LH+E+      
Sbjct: 495 VIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAA 554

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            Q T   Y SLI  L+   ++ +A +L+ +   +G +P++ M   LI G    G  E A 
Sbjct: 555 YQNT---YVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEAL 611

Query: 206 SLLKEMDRMKVH 217
            L   + +M +H
Sbjct: 612 QLSDSICQMDIH 623



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 13/218 (5%)

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M  +G  P  + +N L++ YCR G+   A+ L  +M+  G QP  + Y  LI  +     
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 166 MIE------ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           +        A++ +   L  G++ + V         C  G  E+A+++++EM      PD
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
             TY+ ++   C   KVE+A +L  +MKR GI PD         TY  L+   CK    +
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPD-------VYTYTTLLDRFCKVGLIE 174

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            A     EM   G  P+  TY +LI       K + ++
Sbjct: 175 QARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRAN 212



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN-- 198
           MI +G  P+ + + SL+    +      A +L +  +  G  P  V++N LI G C+   
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 199 -------GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
                  G  ERA++   EM  M V  ++V         C  GK E+A  ++ +M  +G 
Sbjct: 62  LPSMEVIGLAERAYN---EMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGF 118

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            PD         TY+ +I  LC   + + A +L +EM   GITPD  TY +L++    V 
Sbjct: 119 IPDSS-------TYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVG 171

Query: 312 KAAESSN 318
              ++ N
Sbjct: 172 LIEQARN 178


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 160/306 (52%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+QP+  TY + +   CK G L EA++    M   GL P   TY +LID  C  G+
Sbjct: 347 MKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGD 406

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  AF    EM + G+     TY  L+  L  + +M EA+++   + + G   +   Y  
Sbjct: 407 LNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTS 466

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +GY +    +KA  + +EM  K ++P +L Y + I+ L +QN + ++  +    +  G
Sbjct: 467 LFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCG 526

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +  ++  LID +   G    A +LL+EM  + +    VTY  L+ G C+ G V++A 
Sbjct: 527 LTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAV 586

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R  D M R G++P+        + Y ALI GLCKN   + A+ L  EM+ KGI+PD   Y
Sbjct: 587 RYFDHMTRNGLQPN-------IMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVY 639

Query: 301 FSLIEG 306
            SLI+G
Sbjct: 640 TSLIDG 645



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 165/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P  +TY   +  + +EG LE A  + E+MK  GL P  VTYN+LIDGY   G 
Sbjct: 242 MVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGM 301

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A S  +EM   G  P   TYN LI+      ++ +A + L  M ++G+ P+ +TY+ 
Sbjct: 302 LTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYST 361

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ +C+ G   +A     +MI  G+QP   TYTSLI    K   + EA +L       G
Sbjct: 362 LIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAG 421

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +IV + AL+DG C +G +  A  L   + +     ++  Y +L HG  +   +E+A 
Sbjct: 422 VNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAM 481

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L++M ++ +KPD        L Y   I GLC+  E + +  ++REM+  G+T +   Y
Sbjct: 482 DILEEMNKKNLKPD-------LLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIY 534

Query: 301 FSLIEGIASVDKAAESSN 318
            +LI+    V K  E+ N
Sbjct: 535 TTLIDAYFKVGKTTEAVN 552



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 167/353 (47%), Gaps = 42/353 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G++PD  TY S + G  K G L  A  + E+MK+ G  P  +TYN+LI+ +C    
Sbjct: 277 MKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFER 336

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF +   M ++G+ P   TY+ LI        ++EA+    +M   G+ P+  TY  
Sbjct: 337 IPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTS 396

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G+  +AF L  EM   G+   ++TYT+L+  L +  RM EA++LF   L  G
Sbjct: 397 LIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAG 456

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ------- 233
              +  ++ +L  G+     +E+A  +L+EM++  + PD + Y T + G CRQ       
Sbjct: 457 WTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSM 516

Query: 234 ----------------------------GKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                                       GK  EA  LL +M+  GIK        T +TY
Sbjct: 517 AVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKI-------TVVTY 569

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             LI GLCK      A      M   G+ P+   Y +LI+G+   D   E+ N
Sbjct: 570 GVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKN 622



 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 153/300 (51%), Gaps = 7/300 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P    + +  + +   G LEEA +   +M +  ++P   + N L+          +A S
Sbjct: 178 RPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALS 237

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F  +MV  G+ P+  TYN++I  L  E  +  A  + +EM  KG+ PD +TYN LI+GY 
Sbjct: 238 FFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYG 297

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G    A S+ +EM   G +P ++TY SLI    K  R+ +A +       +G+ P++V
Sbjct: 298 KVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVV 357

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ LID  C  G +  A     +M R+ + P+E TY +L+   C+ G + EA +L  +M
Sbjct: 358 TYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEM 417

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           ++ G+       N   +TY AL+ GLC++     AEEL   ++  G T +   Y SL  G
Sbjct: 418 QQAGV-------NLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHG 470



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 134/252 (53%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   +   Y S   G  K   +E+A  +LE+M +  L P  + Y T I G C +  +E +
Sbjct: 456 GWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDS 515

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   EM+  G+   +  Y  LI       K  EA ++L+EM + GI    +TY +LI+G
Sbjct: 516 MAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDG 575

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  ++A    D M   G+QP ++ YT+LI  L K + + EA  LF   L KG+ PD
Sbjct: 576 LCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPD 635

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +++ +LIDG+  +GN   A SL   M  + +  D   Y +L+ G  R G+V+ A+ LLD
Sbjct: 636 KLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLD 695

Query: 245 QMKRRGIKPDHI 256
           +M R+GI PD +
Sbjct: 696 EMLRKGIIPDQV 707



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 135/279 (48%), Gaps = 1/279 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + ++PD   YG+ + G+C++  +E++  ++ +M + GL   +  Y TLID Y   G 
Sbjct: 487 MNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGK 546

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   EM   GI  T  TY +LI  L     + +A      M   G+ P+ + Y  
Sbjct: 547 TTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTA 606

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+    ++A +L +EM+ KGI P  L YTSLI    K     EA  L    +  G
Sbjct: 607 LIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIG 666

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  D+  + +LI G    G ++ A SLL EM R  + PD+V    L+      G + EA 
Sbjct: 667 MELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEAL 726

Query: 241 RLLDQMKRRGIKPDHISFN-PTRLTYNALIQGLCKNQEG 278
            L D M RRG+    I    P+ LT    +  LC +Q G
Sbjct: 727 ALHDDMARRGLISGTIDITVPSCLTAVTKLHKLCASQSG 765



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 129/246 (52%), Gaps = 12/246 (4%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +M +S R+ + + G     + +N+L+   ++E    EA     +M +  ++P   + N 
Sbjct: 167 FDMLWSTRN-VCRPGFGVFDTLFNVLVDLGMLE----EARQCFWKMNKFRVLPKVRSCNE 221

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++   +      A S   +M+  G+ P++ TY  +I  L+++  +  A  LFE   AKG
Sbjct: 222 LLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKG 281

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N+LIDG+   G +  A S+ +EM      PD +TYN+L++  C+  ++ +A 
Sbjct: 282 LRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAF 341

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L  MK+RG++P+ +       TY+ LI   CK      A +   +M+  G+ P++ TY
Sbjct: 342 EYLHGMKQRGLQPNVV-------TYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTY 394

Query: 301 FSLIEG 306
            SLI+ 
Sbjct: 395 TSLIDA 400



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 114/290 (39%), Gaps = 48/290 (16%)

Query: 58  KGNLEMAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI-VPDS 115
           KG+ + A  F  E   + G    A +Y +L H L      ++A  ++KE    G   P  
Sbjct: 105 KGDPKSALKFFKEAGARAGFRHAAESYCVLAHILFCGMFYLDARSVIKEWILLGREFPGC 164

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
             +++L +    C                  +P    + +L  VL     + EA Q F  
Sbjct: 165 DFFDMLWSTRNVC------------------RPGFGVFDTLFNVLVDLGMLEEARQCFWK 206

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
                +LP +   N L+     +     A S  K+M    + P   TYN ++    R+G 
Sbjct: 207 MNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGD 266

Query: 236 VEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNA 267
           +E AR L ++MK +G++PD +++N                            P  +TYN+
Sbjct: 267 LEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNS 326

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           LI   CK +    A E L  M  +G+ P+  TY +LI+         E++
Sbjct: 327 LINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEAN 376


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 161/291 (55%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+ +  EM +KG+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +  + KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLNVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A+ LF+  L K
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+ PD I       TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMIMKGLXPDKI-------TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 132/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L  G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 168/307 (54%), Gaps = 19/307 (6%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           +YG+ ++G+CK G+   A ++L ++    + P  V YNT+ID  C    +  AF    EM
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 204

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           V +GI P   TY+ LI    +  K+ +A D+  +M  + I PD  T+NIL++G+C+ G  
Sbjct: 205 VSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKM 264

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           K+  ++   M+ +GI+P ++TY SL+  + L KQ    +A+ +F      G+ PD   +N
Sbjct: 265 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVN--KANSIFNTMAQGGVNPDTQSYN 322

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            +I+G C    ++ A +L K+M    + P+ VTY +L+ G C+ GK+  A +L+D+M  R
Sbjct: 323 IMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDR 382

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGD--------LAEELLREMVSKGITPDDNTYF 301
           G+ PD I       TY++++  LCKN + D        L +++  ++  KG   D   Y 
Sbjct: 383 GVPPDII-------TYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYT 435

Query: 302 SLIEGIA 308
            +I+G  
Sbjct: 436 VMIQGFC 442



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 166/301 (55%), Gaps = 15/301 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD  TY + +SG    G+L++A  +  +M    + P   T+N L+DG+C  G 
Sbjct: 204 MVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 263

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++   +    M+KQGI P   TY  L+    + +++ +A+ +   M + G+ PD+ +YNI
Sbjct: 264 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNI 323

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     +A +L  +M  K I P ++TYTSLI  L K  ++  A +L +    +G
Sbjct: 324 MINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRG 383

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRM-------KVHPDEVTYNTLMHGRCR 232
           + PDI+ +++++D  C N  +++A +LL ++ D++         + D   Y  ++ G C 
Sbjct: 384 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCV 443

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +G   EA  LL +M+  G  PD         TY  +I  L K  E D+AE+LLREM+++G
Sbjct: 444 KGLFNEALALLSKMEDNGRIPD-------AKTYEIIILSLFKKDENDMAEKLLREMIARG 496

Query: 293 I 293
           +
Sbjct: 497 L 497



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 152/296 (51%), Gaps = 1/296 (0%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQP+   Y + +  MCK   + EA  +  +M   G+ P  VTY+ LI G+   G L+ A 
Sbjct: 174 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAI 233

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              ++M+ + I P   T+N+L+     + KM E   +   M ++GI P+ +TY  L++GY
Sbjct: 234 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 293

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C      KA S+ + M   G+ P   +Y  +I    K  ++ EA  LF+    K ++P++
Sbjct: 294 CLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNV 353

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V + +LIDG C +G I  A  L+ EM    V PD +TY++++   C+  +V++A  LL +
Sbjct: 354 VTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTK 413

Query: 246 MKRRGIKPDHIS-FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +K +  +   +  +N     Y  +IQG C     + A  LL +M   G  PD  TY
Sbjct: 414 LKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTY 469



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 158/313 (50%), Gaps = 32/313 (10%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  P+  T  + + G+C +                      V+Y TLI+G C  G    
Sbjct: 124 KGYDPNVITLTTLIKGLCLK----------------------VSYGTLINGLCKVGQARA 161

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A      +  + + P    YN +I  +   + + EA D+  EM  +GI PD +TY+ LI+
Sbjct: 162 ALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALIS 221

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+   G  K A  L ++MI + I+P + T+  L+    K  +M E   +F   + +G+ P
Sbjct: 222 GFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKP 281

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++V + +L+DG+C    + +A S+   M +  V+PD  +YN +++G C+  KV+EA  L 
Sbjct: 282 NVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLF 341

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M  + I P+ +       TY +LI GLCK+ +   A +L+ EM  +G+ PD  TY S+
Sbjct: 342 KKMHCKNIIPNVV-------TYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSI 394

Query: 304 IEGIA---SVDKA 313
           ++ +     VDKA
Sbjct: 395 LDALCKNHQVDKA 407



 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 146/311 (46%), Gaps = 29/311 (9%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P  + +G  +  + K      A  +  QM+  G+    VT N LI+ +   G   ++FS 
Sbjct: 58  PPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSV 117

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K+G  P   T   LI  L ++                      ++Y  LING C+
Sbjct: 118 FANILKKGYDPNVITLTTLIKGLCLK----------------------VSYGTLINGLCK 155

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G A+ A  L   +  K +QP ++ Y ++I  + K   + EA  L+   +++G+ PD+V 
Sbjct: 156 VGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVT 215

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ALI G    G ++ A  L  +M    + PD  T+N L+ G C+ GK++E + +   M 
Sbjct: 216 YSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMM 275

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           ++GIKP+ +       TY +L+ G C  ++ + A  +   M   G+ PD  +Y  +I G 
Sbjct: 276 KQGIKPNVV-------TYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGF 328

Query: 308 ASVDKAAESSN 318
             + K  E+ N
Sbjct: 329 CKIKKVDEAMN 339



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 115/232 (49%), Gaps = 23/232 (9%)

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT----------- 152
           ++M  KGI  + +T NILIN + + G    +FS+   ++ KG  P ++T           
Sbjct: 84  RQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLK 143

Query: 153 --YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
             Y +LI  L K  +   A QL      K + P++VM+N +ID  C    +  AF L  E
Sbjct: 144 VSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 203

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M    + PD VTY+ L+ G    GK+++A  L ++M    IKPD         T+N L+ 
Sbjct: 204 MVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPD-------VYTFNILVD 256

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSNS 319
           G CK+ +    + +   M+ +GI P+  TY SL++G   +  V+KA    N+
Sbjct: 257 GFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNT 308



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 8/190 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD+ +Y   ++G CK  +++EA  + ++M    ++P  VTY +LIDG C  G 
Sbjct: 309 MAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGK 368

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA--------DDMLKEMGEKGIV 112
           +  A    DEM  +G+ P   TY+ ++  L    ++ +A        D + +++  KG  
Sbjct: 369 ISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYN 428

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
            D   Y ++I G+C  G   +A +L  +M   G  P   TY  +I  L K++    A++L
Sbjct: 429 LDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKL 488

Query: 173 FENFLAKGML 182
               +A+G+L
Sbjct: 489 LREMIARGLL 498


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 169/362 (46%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG------ 54
           M   G  P    + S V   C  G    A ++L++M + G +P  V YN LI        
Sbjct: 363 MMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKD 422

Query: 55  -----------------------------------YCNKGNLEMAFSFRDEMVKQGIMPT 79
                                               C+ G  E AFS   EM+ QG +P 
Sbjct: 423 SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 482

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            STY+ +++ L    KM  A  + +EM   G+V D  TY I+++ +C+ G  ++A    +
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM   G  P ++TYT+LI    K  ++  A++LFE  L++G LP+IV ++ALIDGHC  G
Sbjct: 543 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAG 602

Query: 200 NIERAFSL----------------LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +E+A  +                 K+ D     P+ VTY  L+ G C+  +VEEAR+LL
Sbjct: 603 QVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL 662

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M   G +P+ I        Y+ALI GLCK  + D A+E+  EM   G      TY SL
Sbjct: 663 DAMSMEGCEPNQI-------VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSL 715

Query: 304 IE 305
           I+
Sbjct: 716 ID 717



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 160/332 (48%), Gaps = 23/332 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  +     SF   +C  G+ E+A  ++ +M   G +P   TY+ +++  CN   
Sbjct: 439 MLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASK 498

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E+AF   +EM + G++    TY +++        + +A     EM E G  P+ +TY  
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y +      A  L + M+ +G  P ++TY++LI    K  ++ +A Q+FE      
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618

Query: 181 MLPD----------------IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            +PD                +V + AL+DG C +  +E A  LL  M      P+++ Y+
Sbjct: 619 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 678

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L+ G C+ GK++EA+ +  +M   G       F  T  TY++LI    K +  DLA ++
Sbjct: 679 ALIDGLCKVGKLDEAQEVKTEMSEHG-------FPATLYTYSSLIDRYFKVKRQDLASKV 731

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L +M+     P+   Y  +I+G+  V K  E+
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 763



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 32/340 (9%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TYG+ + G CK  R+EEA ++L+ M   G  P  + Y+ LIDG C  G L+ A  
Sbjct: 636 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 695

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
            + EM + G   T  TY+ LI      ++   A  +L +M E    P+ + Y  +I+G C
Sbjct: 696 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 755

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A+ L   M  KG QP ++TYT++I       ++    +L E   +KG+ P+ V
Sbjct: 756 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 815

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LID  C NG ++ A +LL+EM +         Y  ++ G  ++    E+  LLD++
Sbjct: 816 TYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEI 873

Query: 247 KRRGIKP--------------------------DHISFNPTRL----TYNALIQGLCKNQ 276
            +    P                          +  +F+ T +    TYN+LI+ LC   
Sbjct: 874 GQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLAN 933

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + + A +L  EM  KG+ P+  ++ SLI+G+    K +E+
Sbjct: 934 KVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 149/317 (47%), Gaps = 16/317 (5%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+  Y   +SG+C+    EEA   L +M+    +P  VTY+TL+ G  NK  L      
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC- 126
            + M+ +G  P+   +N L+H          A  +LK+M + G +P  + YNILI   C 
Sbjct: 360 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICG 419

Query: 127 -----RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
                 C     A   + EM+  G+    +  +S    L    +  +A  +    + +G 
Sbjct: 420 DKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGF 479

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD   ++ +++  C    +E AF L +EM R  +  D  TY  ++   C+ G +E+AR+
Sbjct: 480 IPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARK 539

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
             ++M+  G  P+ +       TY ALI    K ++   A EL   M+S+G  P+  TY 
Sbjct: 540 WFNEMREVGCTPNVV-------TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592

Query: 302 SLIEG---IASVDKAAE 315
           +LI+G      V+KA +
Sbjct: 593 ALIDGHCKAGQVEKACQ 609



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 158/358 (44%), Gaps = 46/358 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM----------------KENGLVPT 44
           M S G  P+  TY + + G CK G++E+A ++ E+M                 +N   P 
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 638

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
            VTY  L+DG+C    +E A    D M  +G  P    Y+ LI  L    K+ EA ++  
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 698

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           EM E G      TY+ LI+ Y +      A  +  +M+     P ++ YT +I  L K  
Sbjct: 699 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           +  EA +L +    KG  P++V + A+IDG    G IE    LL+ M    V P+ VTY 
Sbjct: 759 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS--------FN----------------- 259
            L+   C+ G ++ A  LL++MK+    P H +        FN                 
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHW-PTHTAGYRKVIEGFNKEFIESLGLLDEIGQDD 877

Query: 260 --PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD--NTYFSLIEGIASVDKA 313
             P    Y  LI  L K Q  ++A  LL E+ +   T  D  +TY SLIE +   +K 
Sbjct: 878 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKV 935



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 137/314 (43%), Gaps = 20/314 (6%)

Query: 9   DSYTYGSFVSGM----CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           D   +G F++ +    C+ G    A   L ++K+    P+  TYN LI  +     L+ A
Sbjct: 195 DKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSA 254

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM    +     T     + L    K  EA   L  +  +  VPD++ Y  LI+G
Sbjct: 255 SLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISG 311

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     ++A    + M      P ++TY++L+     + ++    ++    + +G  P 
Sbjct: 312 LCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPS 371

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK------VEE 238
             +FN+L+  +CT+G+   A+ LLK+M +    P  V YN L+   C          ++ 
Sbjct: 372 PKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDL 431

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A +   +M   G+  + I+        ++  + LC   + + A  ++REM+ +G  PD +
Sbjct: 432 AEKAYSEMLAAGVVLNKINV-------SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTS 484

Query: 299 TYFSLIEGIASVDK 312
           TY  ++  + +  K
Sbjct: 485 TYSKVLNYLCNASK 498



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 10/219 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G QP+  TY + + G    G++E    +LE+M   G+ P  VTY  LID  C  G 
Sbjct: 770 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGA 829

Query: 61  LEMAFSFRDEMVKQGIMPTAST-YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L++A +  +EM KQ   PT +  Y  +I      ++ +E+  +L E+G+    P    Y 
Sbjct: 830 LDVAHNLLEEM-KQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYR 886

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTML----TYTSLIFVLSKQNRMIEADQLFEN 175
           +LI+   +    + A  L +E+       T++    TY SLI  L   N++  A QLF  
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSE 944

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
              KG++P++  F +LI G   N  I  A  LL  +  M
Sbjct: 945 MTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHM 983



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 129/314 (41%), Gaps = 16/314 (5%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +  +  Y + V  + ++   +     L+Q++++         N L+  +C  G+  +A
Sbjct: 160 GYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIA 219

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 +      P+ STYN LI   L   ++  A  + +EM    +  D  T       
Sbjct: 220 LEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYS 279

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  ++A +L +    +   P  + YT LI  L + +   EA        A   LP+
Sbjct: 280 LCKVGKWREALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPN 336

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ L+ G      + R   +L  M     +P    +N+L+H  C  G    A +LL 
Sbjct: 337 VVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 396

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG------DLAEELLREMVSKGITPDDN 298
           +M + G  P ++        YN LI  +C +++       DLAE+   EM++ G+  +  
Sbjct: 397 KMVKCGHMPGYV-------VYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449

Query: 299 TYFSLIEGIASVDK 312
              S    + S  K
Sbjct: 450 NVSSFTRCLCSAGK 463



 Score = 38.1 bits (87), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N L+   CR G    A   L ++K          F P+R TYN LIQ   K    D A  
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLK-------DFRFRPSRSTYNCLIQAFLKADRLDSASL 256

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + REM    +  D  T       +  V K  E+
Sbjct: 257 IHREMSLANLRMDGFTLRCFAYSLCKVGKWREA 289


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 164/304 (53%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + ++ D Y Y S +S   + G ++ A  + ++M +  +VP A TY  LI G C  G 
Sbjct: 313 MREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQ 372

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM  +G+      +N  +       KM EA  +   M +KGI  D  TYNI
Sbjct: 373 MEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNI 432

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L NG C+     +A  + + M+ KG++P ++T+T  I +  K+  + EA++LF +   KG
Sbjct: 433 LANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKG 492

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P+I+ +N LID +C    +++A  +  EM    + PD  TY++L+HG C  G+V+EA 
Sbjct: 493 EVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEAL 552

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L ++M+ +GI  +         TY ++I GL K    D A +L  EM+  G+ PDD  +
Sbjct: 553 KLFNEMRLKGITRN-------VATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVF 605

Query: 301 FSLI 304
            SL+
Sbjct: 606 TSLV 609



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 163/305 (53%), Gaps = 7/305 (2%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY   +      G +EEA ++ E+M+E  +      Y+++I      GN++ AF+  DEM
Sbjct: 289 TYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEM 348

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
            ++ I+P A TY  LI  +    +M  A+ +L EM  KG+  + + +N  ++GYCR G  
Sbjct: 349 SQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKM 408

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
            +A  L   M  KGI   + TY  L   L K +R  EA  +  + + KG+ P++V F   
Sbjct: 409 DEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMF 468

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           I+ +C  GN+  A  L ++M++    P+ +TYNTL+   C++ KV++A ++  +M  +G+
Sbjct: 469 IEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGL 528

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            PD         TY++LI G C     D A +L  EM  KGIT +  TY S+I G++   
Sbjct: 529 LPD-------LYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEG 581

Query: 312 KAAES 316
           +A E+
Sbjct: 582 RADEA 586



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 173/331 (52%), Gaps = 32/331 (9%)

Query: 20  MCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP 78
           +C+ G +E+A  ++++M   G+V P   TYNTL++ Y  + + +        M K+ ++ 
Sbjct: 226 LCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVF 285

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
           + +TY++LI        + EA+ + +EM EK I  D   Y+ +I+   R GN K+AF+L 
Sbjct: 286 SVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALF 345

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           DEM  + I P   TY +LI  + K  +M  A+ L     +KG+  ++V+FN  +DG+C  
Sbjct: 346 DEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRR 405

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
           G ++ A  L   M++  ++ D  TYN L +G C+  + +EA+ +L+ M  +G+KP+ ++F
Sbjct: 406 GKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTF 465

Query: 259 N----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
                                        P  +TYN LI   CK ++   A ++  EM++
Sbjct: 466 TMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMIN 525

Query: 291 KGITPDDNTYFSLIEG---IASVDKAAESSN 318
           KG+ PD  TY SLI G   +  VD+A +  N
Sbjct: 526 KGLLPDLYTYSSLIHGECIVGRVDEALKLFN 556



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 64/253 (25%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSL------------------- 156
           +  ++I+  CR G  +KA  L DEM+ KGI +P + TY +L                   
Sbjct: 218 SLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKL 277

Query: 157 ------IFVLSKQNRMI----------EADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
                 +F ++  + +I          EA+++FE    K +  D+ +++++I      GN
Sbjct: 278 MEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGN 337

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           ++RAF+L  EM +  + P+  TY  L+ G C+ G++E A  LL +M+ +G+  + + FN 
Sbjct: 338 MKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNT 397

Query: 261 T--------------RL--------------TYNALIQGLCKNQEGDLAEELLREMVSKG 292
           T              RL              TYN L  GLCK    D A+ +L  MV KG
Sbjct: 398 TMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKG 457

Query: 293 ITPDDNTYFSLIE 305
           + P+  T+   IE
Sbjct: 458 VKPNVVTFTMFIE 470



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 12/146 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  P+  TY + +   CK+ ++++A ++  +M   GL+P   TY++LI G C  G 
Sbjct: 488 MEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGR 547

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    +EM  +GI    +TY  +I  L  E +  EA  +  EM + G++PD   +  
Sbjct: 548 VDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTS 607

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI 146
           L+             S H  + H G+
Sbjct: 608 LVG------------SFHKPLTHAGL 621


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 120 GYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 179

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+    E K  +A+++  EM  KG+VP+ + +  LI+G
Sbjct: 180 FRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDG 239

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 240 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPD 299

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +     DEV Y  L+ G C +G+  +A ++L 
Sbjct: 300 KITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLR 359

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 360 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412

Query: 305 EG 306
            G
Sbjct: 413 NG 414



 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 165/326 (50%), Gaps = 28/326 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           + D Y +   ++   + G L +A        E+       T   +++        ++ + 
Sbjct: 52  RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWG 111

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN L+NGY 
Sbjct: 112 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 171

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G+  + F L   M+  G+QP + TY+ LI    K+++  +A++LF+  L KG++P+ V
Sbjct: 172 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXV 231

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A  L+D+M
Sbjct: 232 XFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 291

Query: 247 KRRGIKPDHISFNPT----------------------------RLTYNALIQGLCKNQEG 278
             +G+KPD I++                                + Y ALI GLC     
Sbjct: 292 SXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRS 351

Query: 279 DLAEELLREMVSKGITPDDNTYFSLI 304
             AE++LREM+S G+ PD  TY  +I
Sbjct: 352 VDAEKMLREMLSVGLKPDARTYTMII 377



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 131/229 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G CKE + ++A+ + ++M   GLVP  V + TLIDG+C  G 
Sbjct: 186 MLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGR 245

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 246 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTT 305

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI +  +   + YT+LI  L  + R ++A+++    L+ G
Sbjct: 306 LIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVG 365

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 366 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 128 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 180

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G     K  +++
Sbjct: 181 RLKSAMLASGVQPDVYTYSVLINGXCKESKXDDAN 215


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 165/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+QPD   Y S + G+C  GR  EA+ +L  M   G++P   T+N L+D +C +G 
Sbjct: 174 MTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGK 233

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +    MV  G+ P   TYN +I    +  +M +A  + + M  KG++P+ +TY+ 
Sbjct: 234 ISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSS 293

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+  N  KA  + DEM++ G+   ++T+++LI    K  R   A +LF       
Sbjct: 294 LIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHH 353

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP++     ++DG         A SL ++M++M +  + VTYN ++ G C  GK  +AR
Sbjct: 354 QLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDAR 413

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +GI+ D ++       Y  +I+GLCK    D AE+LL +M   G  P++ TY
Sbjct: 414 ELFSCLPSKGIQIDVVA-------YTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTY 466

Query: 301 FSLIEGI 307
             L+ G+
Sbjct: 467 NVLVRGL 473



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 174/337 (51%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK-ENGLVPTAVTYNTLIDGYCNKG 59
           ++  G + +SYT+G+ ++G+CK G    A   LE+++  N      + Y+T++D  C  G
Sbjct: 103 LEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDG 162

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L +A +F   M  +GI P    YN LIH L    +  EA  +L  M  KGI+P+  T+N
Sbjct: 163 MLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFN 222

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +L++ +C+ G   +A ++   M+H G++P ++TY S+I      ++M +A ++FE  + K
Sbjct: 223 VLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHK 282

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+LP++V +++LI G C   NI +A  +L EM    ++ D VT++TL+ G C+ G+ E A
Sbjct: 283 GLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAA 342

Query: 240 RRLLDQMKRRGIKP----------------------------DHISFNPTRLTYNALIQG 271
             L   M      P                            + ++     +TYN ++ G
Sbjct: 343 IELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDG 402

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +C   + + A EL   + SKGI  D   Y ++I+G+ 
Sbjct: 403 MCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLC 439



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 157/311 (50%), Gaps = 8/311 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S GV+PD +T    ++ +C          +L  M + G+ PT VT+ TLI+G C +GN+ 
Sbjct: 35  SLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVG 94

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNIL 121
            A  F D +   G    + T+  +I+ L        A   L+++ G        I Y+ +
Sbjct: 95  AAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTI 154

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++  C+ G    A +    M  KGIQP ++ Y SLI  L    R  EA  L  N + KG+
Sbjct: 155 MDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGI 214

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P++  FN L+D  C  G I RA +++  M  + V PD VTYN+++ G C   ++ +A +
Sbjct: 215 MPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVK 274

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           + + M  +G+ P+ +       TY++LI G CK +  + A  +L EMV+ G+  D  T+ 
Sbjct: 275 VFELMIHKGLLPNVV-------TYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWS 327

Query: 302 SLIEGIASVDK 312
           +LI G     +
Sbjct: 328 TLIGGFCKAGR 338



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 13/308 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  T+   V   CKEG++  A  ++  M   G+ P  VTYN++I G+C    
Sbjct: 209 MMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQ 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M+ +G++P   TY+ LIH     R + +A  +L EM   G+  D +T++ 
Sbjct: 269 MNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWST 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ G  + A  L   M      P + T   ++  L K     EA  LF       
Sbjct: 329 LIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMN 388

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +IV +N ++DG C+ G    A  L   +    +  D V Y T++ G C++G +++A 
Sbjct: 389 LELNIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAE 448

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT- 299
            LL +M+  G  P+         TYN L++GL +  +   + + L  M  KG++ D  T 
Sbjct: 449 DLLMKMEENGCPPN-------EFTYNVLVRGLLQRYDISRSTKYLMLMKGKGLSADATTT 501

Query: 300 -----YFS 302
                YFS
Sbjct: 502 ELLISYFS 509



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 120/279 (43%), Gaps = 43/279 (15%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A S        G+ P   T  ++I+ L   +  V    +L  M + G+ P  +T+  LIN
Sbjct: 26  AISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLIN 85

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPT---------------------------------- 149
           G C  GN   A    D +   G +                                    
Sbjct: 86  GLCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGF 145

Query: 150 --MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
             ++ Y++++  L K   +  A   F     KG+ PD+V +N+LI G C+ G    A +L
Sbjct: 146 DLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTL 205

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           L  M R  + P+  T+N L+   C++GK+  A+ ++  M   G++PD +       TYN+
Sbjct: 206 LGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVV-------TYNS 258

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +I G C   + + A ++   M+ KG+ P+  TY SLI G
Sbjct: 259 VISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHG 297



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 41/241 (17%)

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           +P    +  L   ++  +    A  ++K     G+ PD  T  I+IN  C   +    FS
Sbjct: 4   LPPDKDFATLFGVIVKMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFS 63

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           +   M   G++PT++T                                   F  LI+G C
Sbjct: 64  VLGAMFKIGVEPTVVT-----------------------------------FATLINGLC 88

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             GN+  A      ++ M    +  T+ T+++G C+ G    A   L++++ R    D +
Sbjct: 89  AEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLL 148

Query: 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                 + Y+ ++  LCK+    LA      M  KGI PD   Y SLI G+ S  +  E+
Sbjct: 149 ------IAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEA 202

Query: 317 S 317
           +
Sbjct: 203 T 203


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 158/302 (52%), Gaps = 11/302 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   T+G  V G+CK  RL +A  ++E M E G  P A+ +N ++D  C +G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+ + + M   G+ PT  TYN+LI     E K+  A ++L+EM  +G  P+ +TYN 
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++G C+ G    A +L   M  K I+  +  YT+LI  L +  ++ EA  L +     G
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P    +NA++   C    I  A  L K M    + PD +T+  ++ G CR  ++++A 
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDAL 240

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
            LL QMK  G+ P  +        YN LI  L  N+ G ++E   LL+EM+S+G++P+  
Sbjct: 241 LLLQQMKSAGLAPREV-------IYNTLIDAL--NRAGRVSEAYRLLQEMISRGLSPNSR 291

Query: 299 TY 300
           TY
Sbjct: 292 TY 293



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           M E G +PT VT+  L+DG C    L  AF   + M ++G  P A  +N ++  L  E +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 96  MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
             EA   ++ M   G+ P  +TYNILI+G+C+     +A  +  EM  +G +P  +TY +
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
            +  L K  ++ +A  LF     K +  D+  +  LIDG C  G +  A+SLL EM+   
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
             P    YN ++   C+  ++ EA +L  +M   GI PD        LT+  ++ G C+ 
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDW-------LTFGMMVFGYCRG 233

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              D A  LL++M S G+ P +  Y +LI+ +    + +E+
Sbjct: 234 HRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEA 274



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  P    Y + +S +CK  R+ EA ++ ++M  +G++P  +T+  ++ GYC    
Sbjct: 176 MENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHR 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +M   G+ P    YN LI  L    ++ EA  +L+EM  +G+ P+S TY +
Sbjct: 236 IDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYAL 295

Query: 121 L 121
           +
Sbjct: 296 M 296



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  T+G  V G C+  R+++A  +L+QMK  GL P  V YNTLID     G 
Sbjct: 211 MTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGR 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE 105
           +  A+    EM+ +G+ P + TY L+  +   +  +V   D  KE
Sbjct: 271 VSEAYRLLQEMISRGLSPNSRTYALMRKQQTDDSNLVVELDYRKE 315


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L   
Sbjct: 131 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E K+ +A+++  EM + G+VP+S+++  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K   + +A  L      KG+ PD
Sbjct: 251 HCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +L++EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K++++ +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC +G ++ A  + K+M    + PD +TYNTL++G C+ G +++A
Sbjct: 236 GLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+++M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLINEMSMKGLKPD-------KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 135/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE +L++A+ + ++M +NGLVP +V++ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L     + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     L+KEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 178/352 (50%), Gaps = 43/352 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ PD+ T+ SF+S +CK GR ++A  + + M   G +P  V+Y+ L+ GY  +G 
Sbjct: 328 MTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGR 387

Query: 61  -----------------------------------LEMAFSFRDEMVKQGIMPTASTYNL 85
                                              ++ A     EM  QG+ P   TY+ 
Sbjct: 388 FADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYST 447

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI       ++ +A +   +M   GI P++  Y+ LI+G+C  G+  KA     EM+ KG
Sbjct: 448 LISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKG 507

Query: 146 I-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           + +P ++ ++S+I  L  + R+++A  +F   +  G  P IV FN+LIDG+C  G +E+A
Sbjct: 508 LHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA 567

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           F +L  M  + + PD VT NTL+ G C+ GK+++   L  +M  + +KP       T +T
Sbjct: 568 FGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKP-------TTVT 620

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN ++ GL +      A+++  EM+  G   D +TY  L++G+   D   E+
Sbjct: 621 YNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEA 672



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 156/300 (52%), Gaps = 11/300 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD  ++ + + G  K+G + +A  +  +M + G+VP   TYN+++D  C    ++ A  
Sbjct: 229 SPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEF 288

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +MV +G+ P   TYN +IH         E+  M ++M  KG++PD++T++  ++  C
Sbjct: 289 VLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLC 348

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G +K A  +   M  KG  P +++Y+ L+   + + R  + + LF +   KG++ +  
Sbjct: 349 KHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCH 408

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
             N LI  H   G ++ A  +  EM    V P+ VTY+TL+   CR G++ +A     QM
Sbjct: 409 CINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQM 468

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLI 304
              GI+P+          Y++LI G C    GDL  A+E + EM+SKG+   +  +FS I
Sbjct: 469 ISIGIEPN-------TAVYHSLIHGFC--MHGDLVKAKEFISEMMSKGLHRPNIVFFSSI 519



 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 177/342 (51%), Gaps = 43/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD  TY S V  +CK   +++A  +L QM + G+ P  VTYN +I GY   G+
Sbjct: 258 MVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGH 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + +     +M  +G++P   T++  +  L    +  +A+++ + M  KG +PD ++Y+I
Sbjct: 318 WKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSI 377

Query: 121 LINGY------------------------CRCGN------AKK-----AFSLHDEMIHKG 145
           L++GY                        C C N      AK+     A  +  EM  +G
Sbjct: 378 LLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQG 437

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P ++TY++LI    +  R+ +A + F   ++ G+ P+  ++++LI G C +G++ +A 
Sbjct: 438 VRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAK 497

Query: 206 SLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             + EM    +H P+ V +++++H  C +G+V +A+ + + +        HI   PT +T
Sbjct: 498 EFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVI-------HIGDRPTIVT 550

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +N+LI G C   + + A  +L  MVS GI PD  T  +L+ G
Sbjct: 551 FNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSG 592



 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 149/331 (45%), Gaps = 43/331 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV+P+  TY + +S  C+ GRL +A     QM   G+ P    Y++LI G+C  G+
Sbjct: 433 MQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGD 492

Query: 61  LEMAFSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDM----------------- 102
           L  A  F  EM+ +G+  P    ++ +IH L +E ++++A D+                 
Sbjct: 493 LVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFN 552

Query: 103 ------------------LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                             L  M   GI PD +T N L++GYC+ G       L  EM+HK
Sbjct: 553 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHK 612

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            ++PT +TY  ++  L +  R   A ++F   +  G   DI  +  L+ G C N   + A
Sbjct: 613 KVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEA 672

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +L  ++  M    D    NT+++   +  + EEA  L   +   G+ P+ +S      T
Sbjct: 673 ITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPN-VS------T 725

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           Y  +I+ L K    + A+ +   M   G  P
Sbjct: 726 YGVMIRNLLKEGSVEEADTMFSSMEKSGCAP 756



 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 142/278 (51%), Gaps = 10/278 (3%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD-M 102
           T  TY  L+D  C     ++  +F   +++ G+          +  L   ++  EA D +
Sbjct: 123 TVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVL 182

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVL 160
           L  M E   VPD+I+YN +I   C    +++A  +   M  +G    P ++++ ++I   
Sbjct: 183 LHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGF 242

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            KQ  + +A  LF   + KG++PD+  +N+++D  C    +++A  +L++M    V PD 
Sbjct: 243 FKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDG 302

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           VTYN ++HG    G  +E+ ++  +M  +G+ PD +       T+++ +  LCK+     
Sbjct: 303 VTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTV-------TFSSFMSSLCKHGRSKD 355

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           AEE+ + M +KG  PD  +Y  L+ G A+  + A+ +N
Sbjct: 356 AEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNN 393



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 113/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P   T+ S + G C  G++E+A  +L+ M   G+ P  VT NTL+ GYC  G ++  
Sbjct: 543 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDG 602

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM+ + + PT  TYN+++  LL   +   A  M  EM + G   D  TY IL+ G
Sbjct: 603 LILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG 662

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A +L  ++     +  +    ++I  L K  R  EA+ LF      G++P+
Sbjct: 663 LCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPN 722

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           +  +  +I      G++E A ++   M++    P     N ++    ++G + +A
Sbjct: 723 VSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 777



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 107/243 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++PD  T  + VSG CK G++++   +  +M    + PT VTYN ++DG    G 
Sbjct: 574 MVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGR 633

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM+  G      TY +L+  L       EA  +  ++G      D    N 
Sbjct: 634 TSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNT 693

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN   +    ++A  L   +   G+ P + TY  +I  L K+  + EAD +F +    G
Sbjct: 694 MINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSG 753

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P   + N +I      G+I +A   + ++D   +  +  T + LM     +GK  E  
Sbjct: 754 CAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHREQI 813

Query: 241 RLL 243
           + L
Sbjct: 814 KFL 816


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 169/362 (46%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG------ 54
           M   G  P    + S V   C  G    A ++L++M + G +P  V YN LI        
Sbjct: 322 MMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKD 381

Query: 55  -----------------------------------YCNKGNLEMAFSFRDEMVKQGIMPT 79
                                               C+ G  E AFS   EM+ QG +P 
Sbjct: 382 SLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 441

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            STY+ +++ L    KM  A  + +EM   G+V D  TY I+++ +C+ G  ++A    +
Sbjct: 442 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 501

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM   G  P ++TYT+LI    K  ++  A++LFE  L++G LP+IV ++ALIDGHC  G
Sbjct: 502 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAG 561

Query: 200 NIERAFSL----------------LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +E+A  +                 K+ D     P+ VTY  L+ G C+  +VEEAR+LL
Sbjct: 562 QVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLL 621

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D M   G +P+ I        Y+ALI GLCK  + D A+E+  EM   G      TY SL
Sbjct: 622 DAMSMEGCEPNQI-------VYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSL 674

Query: 304 IE 305
           I+
Sbjct: 675 ID 676



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 160/332 (48%), Gaps = 23/332 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  +     SF   +C  G+ E+A  ++ +M   G +P   TY+ +++  CN   
Sbjct: 398 MLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASK 457

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E+AF   +EM + G++    TY +++        + +A     EM E G  P+ +TY  
Sbjct: 458 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 517

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y +      A  L + M+ +G  P ++TY++LI    K  ++ +A Q+FE      
Sbjct: 518 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 577

Query: 181 MLPD----------------IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            +PD                +V + AL+DG C +  +E A  LL  M      P+++ Y+
Sbjct: 578 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 637

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L+ G C+ GK++EA+ +  +M   G       F  T  TY++LI    K +  DLA ++
Sbjct: 638 ALIDGLCKVGKLDEAQEVKTEMSEHG-------FPATLYTYSSLIDRYFKVKRQDLASKV 690

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L +M+     P+   Y  +I+G+  V K  E+
Sbjct: 691 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 722



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 32/340 (9%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TYG+ + G CK  R+EEA ++L+ M   G  P  + Y+ LIDG C  G L+ A  
Sbjct: 595 RPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 654

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
            + EM + G   T  TY+ LI      ++   A  +L +M E    P+ + Y  +I+G C
Sbjct: 655 VKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 714

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A+ L   M  KG QP ++TYT++I       ++    +L E   +KG+ P+ V
Sbjct: 715 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYV 774

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LID  C NG ++ A +LL+EM +         Y  ++ G  ++    E+  LLD++
Sbjct: 775 TYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEI 832

Query: 247 KRRGIKP--------------------------DHISFNPTRL----TYNALIQGLCKNQ 276
            +    P                          +  +F+ T +    TYN+LI+ LC   
Sbjct: 833 GQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLAN 892

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + + A +L  EM  KG+ P+  ++ SLI+G+    K +E+
Sbjct: 893 KVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 932



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 154/322 (47%), Gaps = 26/322 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+  Y   +SG+C+    EEA   L +M+    +P  VTY+TL+ G  NK  L      
Sbjct: 259 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 318

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            + M+ +G  P+   +N L+H          A  +LK+M + G +P  + YNILI     
Sbjct: 319 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSI-- 376

Query: 128 CGN-----------AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           CG+           A+KA+S   EM+  G+    +  +S    L    +  +A  +    
Sbjct: 377 CGDKDSLNFDLLDLAEKAYS---EMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREM 433

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           + +G +PD   ++ +++  C    +E AF L +EM R  +  D  TY  ++   C+ G +
Sbjct: 434 IGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLI 493

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           E+AR+  ++M+  G  P+ +       TY ALI    K ++   A EL   M+S+G  P+
Sbjct: 494 EQARKWFNEMREVGCTPNVV-------TYTALIHAYLKAKKVSYANELFETMLSEGCLPN 546

Query: 297 DNTYFSLIEG---IASVDKAAE 315
             TY +LI+G      V+KA +
Sbjct: 547 IVTYSALIDGHCKAGQVEKACQ 568



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 158/358 (44%), Gaps = 46/358 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM----------------KENGLVPT 44
           M S G  P+  TY + + G CK G++E+A ++ E+M                 +N   P 
Sbjct: 538 MLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPN 597

Query: 45  AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104
            VTY  L+DG+C    +E A    D M  +G  P    Y+ LI  L    K+ EA ++  
Sbjct: 598 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 657

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           EM E G      TY+ LI+ Y +      A  +  +M+     P ++ YT +I  L K  
Sbjct: 658 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 717

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           +  EA +L +    KG  P++V + A+IDG    G IE    LL+ M    V P+ VTY 
Sbjct: 718 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 777

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS--------FN----------------- 259
            L+   C+ G ++ A  LL++MK+    P H +        FN                 
Sbjct: 778 VLIDHCCKNGALDVAHNLLEEMKQTHW-PTHTAGYRKVIEGFNKEFIESLGLLDEIGQDD 836

Query: 260 --PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD--NTYFSLIEGIASVDKA 313
             P    Y  LI  L K Q  ++A  LL E+ +   T  D  +TY SLIE +   +K 
Sbjct: 837 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKV 894



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 137/314 (43%), Gaps = 20/314 (6%)

Query: 9   DSYTYGSFVSGM----CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           D   +G F++ +    C+ G    A   L ++K+    P+  TYN LI  +     L+ A
Sbjct: 154 DKEVFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSA 213

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM    +     T     + L    K  EA   L  +  +  VPD++ Y  LI+G
Sbjct: 214 SLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISG 270

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     ++A    + M      P ++TY++L+     + ++    ++    + +G  P 
Sbjct: 271 LCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPS 330

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK------VEE 238
             +FN+L+  +CT+G+   A+ LLK+M +    P  V YN L+   C          ++ 
Sbjct: 331 PKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDL 390

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A +   +M   G+  + I+        ++  + LC   + + A  ++REM+ +G  PD +
Sbjct: 391 AEKAYSEMLAAGVVLNKINV-------SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTS 443

Query: 299 TYFSLIEGIASVDK 312
           TY  ++  + +  K
Sbjct: 444 TYSKVLNYLCNASK 457



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 10/219 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G QP+  TY + + G    G++E    +LE+M   G+ P  VTY  LID  C  G 
Sbjct: 729 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGA 788

Query: 61  LEMAFSFRDEMVKQGIMPTAST-YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L++A +  +EM KQ   PT +  Y  +I      ++ +E+  +L E+G+    P    Y 
Sbjct: 789 LDVAHNLLEEM-KQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYR 845

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTML----TYTSLIFVLSKQNRMIEADQLFEN 175
           +LI+   +    + A  L +E+       T++    TY SLI  L   N++  A QLF  
Sbjct: 846 LLIDNLIKAQRLEMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSE 903

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
              KG++P++  F +LI G   N  I  A  LL  +  M
Sbjct: 904 MTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHM 942



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 129/314 (41%), Gaps = 16/314 (5%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +  +  Y + V  + ++   +     L+Q++++         N L+  +C  G+  +A
Sbjct: 119 GYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGQFLNVLVRKHCRNGSFSIA 178

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 +      P+ STYN LI   L   ++  A  + +EM    +  D  T       
Sbjct: 179 LEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYS 238

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  ++A +L +    +   P  + YT LI  L + +   EA        A   LP+
Sbjct: 239 LCKVGKWREALTLVET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPN 295

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ L+ G      + R   +L  M     +P    +N+L+H  C  G    A +LL 
Sbjct: 296 VVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 355

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG------DLAEELLREMVSKGITPDDN 298
           +M + G  P ++        YN LI  +C +++       DLAE+   EM++ G+  +  
Sbjct: 356 KMVKCGHMPGYV-------VYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKI 408

Query: 299 TYFSLIEGIASVDK 312
              S    + S  K
Sbjct: 409 NVSSFTRCLCSAGK 422



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N L+   CR G    A   L ++K          F P+R TYN LIQ   K    D A  
Sbjct: 163 NVLVRKHCRNGSFSIALEELGRLK-------DFRFRPSRSTYNCLIQAFLKADRLDSASL 215

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + REM    +  D  T       +  V K  E+
Sbjct: 216 IHREMSLANLRMDGFTLRCFAYSLCKVGKWREA 248


>gi|255661016|gb|ACU25677.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 367

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 159/291 (54%), Gaps = 8/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G L ++  +LE  +  G V  A  Y+ +I+G C +  
Sbjct: 85  MKESGYVEDSITYGILVHGFCKNGYLNKSIHVLEIAERKGGVLDAFAYSAMINGLCKEAK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  +L+EMG     P  +TY+ 
Sbjct: 145 LDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTXHFSPTVVTYSX 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           JING C+     +A+ L  EM+ KG+ P+++TY+ LI  L    ++ +A QL+   ++KG
Sbjct: 205 JINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDRKVDKALQLWNQVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N +I G C+ G ++ A SL   M+R    P+ VT+NTLM G  + G V  A 
Sbjct: 265 FKPDVQMHNIMIHGLCSVGKMQLALSLYY-MNRWDCAPNLVTHNTLMEGFYKDGDVRNAL 323

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
            +  ++ R G++PD IS+N T       ++GLC       A   L++ VSK
Sbjct: 324 VIWARILRNGLQPDIISYNIT-------LKGLCSCNRISGAILFLQDAVSK 367



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 159/292 (54%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY   G ++  F   + M ++G   + 
Sbjct: 1   CEIGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVGRIKDCFELWELMGREG-SRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N++   L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMXRGLFBNGKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSIHVLEI 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+ ++ +A  +    +  G  P+  ++NALI+G      
Sbjct: 120 AERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  +L+EM      P  VTY+ J++G C+  +  EA  L+ +M  +G+       NP
Sbjct: 180 FEDAIRVLREMGTXHFSPTVVTYSXJINGLCKGERFGEAYDLVKEMLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + +TY+ LI+GLC +++ D A +L  +++SKG  PD   +  +I G+ SV K
Sbjct: 233 SVITYSLLIKGLCLDRKVDKALQLWNQVISKGFKPDVQMHNIMIHGLCSVGK 284



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 156/336 (46%), Gaps = 28/336 (8%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD+  Y + ++G  + GR+++   + E M   G   +  ++N +  G  B G ++   
Sbjct: 21  VSPDAVVYNAMLNGYFRVGRIKDCFELWELMGREG-SRSVSSFNIMXRGLFBNGKVDEVI 79

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S  + M + G +  + TY +L+H       + ++  +L+    KG V D+  Y+ +ING 
Sbjct: 80  SIWELMKESGYVEDSITYGILVHGFCKNGYLNKSIHVLEIAERKGGVLDAFAYSAMINGL 139

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+     KA S+ + MI  G +P    Y +LI  L   ++  +A ++          P +
Sbjct: 140 CKEAKLDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTXHFSPTV 199

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V ++ JI+G C       A+ L+KEM    ++P  +TY+ L+ G C   KV++A +L +Q
Sbjct: 200 VTYSXJINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDRKVDKALQLWNQ 259

Query: 246 MKRRGIKPDHISFN---------------------------PTRLTYNALIQGLCKNQEG 278
           +  +G KPD    N                           P  +T+N L++G  K+ + 
Sbjct: 260 VISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYYMNRWDCAPNLVTHNTLMEGFYKDGDV 319

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
             A  +   ++  G+ PD  +Y   ++G+ S ++ +
Sbjct: 320 RNALVIWARILRNGLQPDIISYNITLKGLCSCNRIS 355



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 125/251 (49%), Gaps = 32/251 (12%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R G  K  F L + M  +G   ++ ++  +  
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVGRIKDCFELWELMGREG-SRSVSSFNIMXR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG + ++  +L+  +R     
Sbjct: 68  GLFBNGKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSIHVLEIAERKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HI--------------------- 256
           D   Y+ +++G C++ K+++A  +L+ M + G KP+ H+                     
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRVL 187

Query: 257 ------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA-- 308
                  F+PT +TY+ JI GLCK +    A +L++EM+ KG+ P   TY  LI+G+   
Sbjct: 188 REMGTXHFSPTVVTYSXJINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLD 247

Query: 309 -SVDKAAESSN 318
             VDKA +  N
Sbjct: 248 RKVDKALQLWN 258


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 171/347 (49%), Gaps = 31/347 (8%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           MK  G  +P+  TY   +   CK G + E   +LE+M+  GL      Y++LI  +C +G
Sbjct: 175 MKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEG 234

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           ++E      DEM+++ + P   TY+ L+  L    +  EA +MLK+M  +G+ PD + Y 
Sbjct: 235 DIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYT 294

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +L +G C+ G A  A  + D M+ KG +P  LTY  ++  L K++RM +A  + E  + K
Sbjct: 295 VLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKK 354

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVE 237
           G  PD V +N L+ G C  G I  A  L K +  ++  V PD  T N L+ G C++G+V 
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVH 414

Query: 238 EARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALI 269
           +A R+   M   G++ + +++N                            P  +TY+ +I
Sbjct: 415 DAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMI 474

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            GLCK Q   +A  L  +M   GI P    Y +L+  +   D   ++
Sbjct: 475 NGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQA 521



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 170/349 (48%), Gaps = 33/349 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN--GLVPTAVTYNTLIDGYCNK 58
           M  RG   + Y     + G C+ G+ ++A  +  QMK N   +VP  VTYNTL++G+C  
Sbjct: 103 MTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKA 162

Query: 59  GNLEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
             L  A    + M K G   P   TY++LI       ++ E   +L+EM  +G+  D   
Sbjct: 163 KRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFV 222

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y+ LI+ +C  G+ +    L DEM+ + + P ++TY+ L+  L +  R  EA ++ ++  
Sbjct: 223 YSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMT 282

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           A+G+ PD+V +  L DG C NG    A  +L  M +    P  +TYN +++G C++ +++
Sbjct: 283 ARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMD 342

Query: 238 EARRLLDQMKRRGIKPDHISFN------------------------------PTRLTYNA 267
           +A  +++ M ++G KPD +++N                              P   T N 
Sbjct: 343 DAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNN 402

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LIQGLCK      A  +   MV  G+  +  TY  LIEG  +  K  E+
Sbjct: 403 LIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEA 451



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 160/306 (52%), Gaps = 9/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RGV+PD   Y     G+CK GR  +A ++L+ M + G  P  +TYN +++G C +  
Sbjct: 281 MTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDR 340

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEK-GIVPDSITY 118
           ++ AF   + MVK+G  P A TYN L+  L    K+ EA D+ K +  EK  + PD  T 
Sbjct: 341 MDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTC 400

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N LI G C+ G    A  +H  M+  G+Q  ++TY  LI       ++IEA +L++  + 
Sbjct: 401 NNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVE 460

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G  P+ + ++ +I+G C    +  A  L  +M    + P  + YN LM   CR+  +E+
Sbjct: 461 SGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQ 520

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR L  +M+       +++ N   +++N +I G  K  +   A+ELL EM    + PD  
Sbjct: 521 ARSLFQEMR-------NVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAV 573

Query: 299 TYFSLI 304
           T+  LI
Sbjct: 574 TFSILI 579



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 156/298 (52%), Gaps = 9/298 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M  +G +PD+ TY + + G+C  G++ EA  + + +  ++  + P   T N LI G C +
Sbjct: 351 MVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKE 410

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G +  A      MV+ G+     TYN LI   L  RK++EA  + K   E G  P+S+TY
Sbjct: 411 GRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTY 470

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +++ING C+      A  L  +M   GI+PT++ Y +L+  L +++ + +A  LF+    
Sbjct: 471 SVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRN 530

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
                D+V FN +IDG    G+++ A  LL EM  M + PD VT++ L++   + G ++E
Sbjct: 531 VNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDE 590

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           A  L ++M   G    H+   P  + +++L++G     E +    LL +M  K +  D
Sbjct: 591 AMGLYEKMVSCG----HV---PGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLD 641



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 152/340 (44%), Gaps = 31/340 (9%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P      + +  + K  + +    +  +M    ++P   + + L + + N  +   AFS 
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK--GIVPDSITYNILINGY 125
              M K+G        NL++       +  +A  +  +M      +VPD +TYN L+NG+
Sbjct: 100 LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGF 159

Query: 126 CRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           C+     +A  L + M   G  +P ++TY+ LI    K   + E   L E    +G+  D
Sbjct: 160 CKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKAD 219

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           + ++++LI   C  G+IE    L  EM R KV P+ VTY+ LM G  R G+  EA  +L 
Sbjct: 220 VFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLK 279

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  RG++PD +++                             P  LTYN ++ GLCK  
Sbjct: 280 DMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKED 339

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             D A  ++  MV KG  PD  TY +L++G+    K  E+
Sbjct: 340 RMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEA 379



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 35/279 (12%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASR-----------------------------MLEQM 36
           V+PD +T  + + G+CKEGR+ +A+R                             ++E +
Sbjct: 393 VKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEAL 452

Query: 37  K------ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
           K      E+G  P ++TY+ +I+G C    L +A     +M   GI PT   YN L+  L
Sbjct: 453 KLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSL 512

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
             E  + +A  + +EM       D +++NI+I+G  + G+ K A  L  EM    + P  
Sbjct: 513 CREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDA 572

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           +T++ LI   SK   + EA  L+E  ++ G +P +V+F++L+ G+   G  E+  SLL +
Sbjct: 573 VTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQ 632

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           M    V  D    +T++   C   +  +  ++L +  ++
Sbjct: 633 MADKDVVLDSKLTSTILACLCHMSRNLDVEKILPKFSQQ 671



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 41/276 (14%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P+    +TLID        +   S   +MV   ++P  ++ + L    +       A  +
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           L  M ++G   +    N+++ G+CR G   KA SL  +M                    K
Sbjct: 100 LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQM--------------------K 139

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEV 221
           +N                ++PD V +N L++G C    +  A  L + M +     P+ V
Sbjct: 140 RNY-------------DCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLV 186

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           TY+ L+   C+ G+V E   LL++M+R G+K D          Y++LI   C   + +  
Sbjct: 187 TYSVLIDCYCKSGEVGEGLGLLEEMEREGLKAD-------VFVYSSLISAFCGEGDIETG 239

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            EL  EM+ + ++P+  TY  L++G+    +  E+S
Sbjct: 240 RELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREAS 275


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 167/298 (56%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV P+ YTY S ++  C++G+L  A ++ +++ + G+   AVTYN LI G C KG 
Sbjct: 203 MKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQ 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M +  I PT  T+N+L+  L    ++ +A   L+++   G+ P  +TYNI
Sbjct: 263 VSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNI 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN+     L  EM  +GI P+ +TYT L+    + + + +A ++F      G
Sbjct: 323 LISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +  LI G C  GN+  A  L K M  M + P++V YNT+++G C++    +A 
Sbjct: 383 LVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKAL 442

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           + L++M + G+ P+  S+  T       IQ LCK+ +   A+ LL+EM   G+ P ++
Sbjct: 443 KFLEEMVKNGVTPNVASYIST-------IQILCKDGKSIEAKRLLKEMTEAGLKPPES 493



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  + Y Y   ++G  K+G  ++   + ++MK  G++P   TYN+LI  YC  G 
Sbjct: 168 MDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGK 227

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +AF   DE+ K+G+   A TYN+LI  L  + ++ +A+ +L+ M    I P + T+N+
Sbjct: 228 LSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNM 287

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G   KA S  +++   G+ PT++TY  LI   SK        +L      +G
Sbjct: 288 LMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRG 347

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  L++    + +IE+A+ +   M R+ + PD+ TY  L+HG C +G + EA 
Sbjct: 348 ISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEAS 407

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   M    ++P+ +        YN +I G CK      A + L EMV  G+TP+  +Y
Sbjct: 408 KLYKSMVEMHLQPNDV-------IYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASY 460

Query: 301 FSLIEGIASVDKAAES 316
            S I+ +    K+ E+
Sbjct: 461 ISTIQILCKDGKSIEA 476



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 152/311 (48%), Gaps = 7/311 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           Q D Y++   +   C+ G + +   +L QM+  G+ P    Y  LI+  C  G+++ A  
Sbjct: 104 QFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKV 163

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               M   G+      Y ++I+    +    +  ++ ++M   G++P+  TYN LI  YC
Sbjct: 164 MFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYC 223

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G    AF + DE+  +G+    +TY  LI  L ++ ++ +A+ L E      + P   
Sbjct: 224 RDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTR 283

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN L+DG C  G +++A S L+++  + + P  VTYN L+ G  + G       L+ +M
Sbjct: 284 TFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREM 343

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + RGI       +P+++TY  L+    ++ + + A E+   M   G+ PD +TY  LI G
Sbjct: 344 EDRGI-------SPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHG 396

Query: 307 IASVDKAAESS 317
           +       E+S
Sbjct: 397 LCIKGNMVEAS 407



 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 141/320 (44%), Gaps = 41/320 (12%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLID-------------------------------- 53
           LE++    + M   G  P++ ++N  +D                                
Sbjct: 54  LEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWIT 113

Query: 54  --GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI 111
              +C  GN+   F    +M   G+ P    Y +LI        + +A  M   M + G+
Sbjct: 114 IKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGL 173

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
             +   Y I+ING+ + G  K  F L+ +M   G+ P + TY SLI    +  ++  A +
Sbjct: 174 AANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFK 233

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           +F+    +G+  + V +N LI G C  G + +A  LL+ M R  ++P   T+N LM G C
Sbjct: 234 VFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLC 293

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
             G++++A   L+++K  G+        PT +TYN LI G  K     +  EL+REM  +
Sbjct: 294 NTGQLDKALSYLEKLKLIGL-------CPTLVTYNILISGFSKVGNSSVVSELVREMEDR 346

Query: 292 GITPDDNTYFSLIEGIASVD 311
           GI+P   TY  L+      D
Sbjct: 347 GISPSKVTYTILMNTFVRSD 366


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 167/298 (56%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  GV P+ YTY S ++  C++G+L  A ++ +++ + G+   AVTYN LI G C KG 
Sbjct: 203 MKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQ 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M +  I PT  T+N+L+  L    ++ +A   L+++   G+ P  +TYNI
Sbjct: 263 VSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNI 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + GN+     L  EM  +GI P+ +TYT L+    + + + +A ++F      G
Sbjct: 323 LISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD   +  LI G C  GN+  A  L K M  M + P++V YNT+++G C++    +A 
Sbjct: 383 LVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKAL 442

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           + L++M + G+ P+  S+  T       IQ LCK+ +   A+ LL+EM   G+ P ++
Sbjct: 443 KFLEEMVKNGVTPNVASYIST-------IQILCKDGKSIEAKRLLKEMTEAGLKPPES 493



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+  + Y Y   ++G  K+G  ++   + ++MK  G++P   TYN+LI  YC  G 
Sbjct: 168 MDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGK 227

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +AF   DE+ K+G+   A TYN+LI  L  + ++ +A+ +L+ M    I P + T+N+
Sbjct: 228 LSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNM 287

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G   KA S  +++   G+ PT++TY  LI   SK        +L      +G
Sbjct: 288 LMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRG 347

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V +  L++    + +IE+A+ +   M R+ + PD+ TY  L+HG C +G + EA 
Sbjct: 348 ISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEAS 407

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L   M    ++P+ +        YN +I G CK      A + L EMV  G+TP+  +Y
Sbjct: 408 KLYKSMVEMHLQPNDV-------IYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASY 460

Query: 301 FSLIEGIASVDKAAES 316
            S I+ +    K+ E+
Sbjct: 461 ISTIQILCKDGKSIEA 476



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 153/311 (49%), Gaps = 7/311 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           Q D Y++G  +   C+ G + +   +L QM+  G+ P    Y  LI+  C  G+++ A  
Sbjct: 104 QFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKV 163

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               M   G+      Y ++I+    +    +  ++ ++M   G++P+  TYN LI  YC
Sbjct: 164 MFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYC 223

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G    AF + DE+  +G+    +TY  LI  L ++ ++ +A+ L E      + P   
Sbjct: 224 RDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTR 283

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN L+DG C  G +++A S L+++  + + P  VTYN L+ G  + G       L+ +M
Sbjct: 284 TFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREM 343

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           + RGI       +P+++TY  L+    ++ + + A E+   M   G+ PD +TY  LI G
Sbjct: 344 EDRGI-------SPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHG 396

Query: 307 IASVDKAAESS 317
           +       E+S
Sbjct: 397 LCIKGNMVEAS 407



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 141/320 (44%), Gaps = 41/320 (12%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLID-------------------------------- 53
           LE++    + M   G  P++ ++N  +D                                
Sbjct: 54  LEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGIT 113

Query: 54  --GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI 111
              +C  GN+   F    +M   G+ P    Y +LI        + +A  M   M + G+
Sbjct: 114 IKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGL 173

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
             +   Y I+ING+ + G  K  F L+ +M   G+ P + TY SLI    +  ++  A +
Sbjct: 174 AANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFK 233

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           +F+    +G+  + V +N LI G C  G + +A  LL+ M R  ++P   T+N LM G C
Sbjct: 234 VFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLC 293

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
             G++++A   L+++K  G+        PT +TYN LI G  K     +  EL+REM  +
Sbjct: 294 NTGQLDKALSYLEKLKLIGL-------CPTLVTYNILISGFSKVGNSSVVSELVREMEDR 346

Query: 292 GITPDDNTYFSLIEGIASVD 311
           GI+P   TY  L+      D
Sbjct: 347 GISPSKVTYTILMNTFVRSD 366


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 171/345 (49%), Gaps = 43/345 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+  + YTY  F++  C+  +L  A  +L +M + G  P+ VT N+L++G+C+   
Sbjct: 101 MQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNR 160

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+  L+H L    K  EA  +++ M  KG  PD +TY  
Sbjct: 161 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 220

Query: 121 LINGYCRCG-----------------------------------NAKKAFSLHDEMIHKG 145
           +ING C+ G                                   +   AF L ++M  KG
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I+P + TY  LI  L    R  +A +L  + L K + PD+V FNALID     G +  A 
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340

Query: 206 SLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            L  EM + K   PD V YNTL+ G C+  +VEE   +  +M +RG+  + +       T
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV-------T 393

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           Y  LI G  + ++ D A+ + ++MVS G+ PD  TY  L++G+ +
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCN 438



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 171/353 (48%), Gaps = 44/353 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QPD  TYG+ ++G+CK G  + A  +L +M++  +    V YNT+IDG C   +
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKH 265

Query: 61  LEMAFSFRDEMVKQGIMPTASTYN-----------------------------------L 85
           ++ AF   ++M  +GI P   TYN                                    
Sbjct: 266 MDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNA 325

Query: 86  LIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           LI   + E K+VEA+ +  EM   K   PD + YN LI G+C+    ++   +  EM  +
Sbjct: 326 LIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQR 385

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G+    +TYT+LI    +      A  +F+  ++ G+ PDI+ +N L+DG C NGN+E A
Sbjct: 386 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETA 445

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             + + M +  +  D VTY T++   C+ GKVE+   L   +  +G+KP+ +       T
Sbjct: 446 LVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV-------T 498

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG-IASVDKAAES 316
           Y  ++ G C+    + A+ L  EM   G  P+  TY +LI   +   D+AA +
Sbjct: 499 YTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASA 551



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 162/319 (50%), Gaps = 8/319 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD+ T+ + V G+ +  +  EA  ++E+M   G  P  VTY  +I+G C +G 
Sbjct: 171 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 230

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A +  ++M K  I      YN +I  L   + M +A D+  +M  KGI PD  TYN 
Sbjct: 231 PDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNP 290

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL-AK 179
           LI+  C  G    A  L  +M+ K I P ++ + +LI    K+ +++EA++L++  + +K
Sbjct: 291 LISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSK 350

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
              PD+V +N LI G C    +E    + +EM +  +  + VTY TL+HG  +    + A
Sbjct: 351 HCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 410

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + +  QM   G+ PD        +TYN L+ GLC N   + A  +   M  + +  D  T
Sbjct: 411 QMVFKQMVSDGVHPD-------IMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVT 463

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y ++IE +    K  +  +
Sbjct: 464 YTTMIEALCKAGKVEDGWD 482



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 160/304 (52%), Gaps = 14/304 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G++PD +TY   +S +C  GR  +ASR+L  M E  + P  V +N LID +  +G 
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335

Query: 61  LEMAFSFRDEMVK-QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L  A    DEMVK +   P    YN LI      +++ E  ++ +EM ++G+V +++TY 
Sbjct: 336 LVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYT 395

Query: 120 ILINGYCR---CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            LI+G+ +   C NA+  F    +M+  G+ P ++TY  L+  L     +  A  +FE  
Sbjct: 396 TLIHGFFQARDCDNAQMVFK---QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYM 452

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             + M  DIV +  +I+  C  G +E  + L   +    V P+ VTY T+M G CR+G  
Sbjct: 453 QKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 512

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           EEA  L  +MK  G  P+         TYN LI+   ++ +   + EL++EM S G   D
Sbjct: 513 EEADALFVEMKEDGPLPNSG-------TYNTLIRARLRDGDEAASAELIKEMRSCGFAGD 565

Query: 297 DNTY 300
            +T+
Sbjct: 566 ASTF 569



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 152/292 (52%), Gaps = 7/292 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +L++A  +   M ++   P+ V ++ L+         ++  S  ++M   GI     TY+
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           + I+      ++  A  +L +M + G  P  +T N L+NG+C      +A +L D+M+  
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G QP  +T+T+L+  L + N+  EA  L E  + KG  PD+V + A+I+G C  G  + A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +LL +M++ K+  D V YNT++ G C+   +++A  L ++M+ +GIKPD  ++NP    
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNP---- 290

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              LI  LC       A  LL +M+ K I PD   + +LI+      K  E+
Sbjct: 291 ---LISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEA 339



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 164/337 (48%), Gaps = 32/337 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KSR   P    +   +S + K  + +    + EQM+  G+     TY+  I+ +C +  
Sbjct: 67  VKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQ 125

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A +   +M+K G  P+  T N L++      ++ EA  ++ +M E G  PD++T+  
Sbjct: 126 LSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTT 185

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G  +   A +A +L + M+ KG QP ++TY ++I  L K+     A  L  N + KG
Sbjct: 186 LVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLL-NKMEKG 244

Query: 181 ML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            +  D+V++N +IDG C   +++ AF L  +M+   + PD  TYN L+   C  G+  +A
Sbjct: 245 KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDA 304

Query: 240 RRLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQ 270
            RLL  M  + I PD + FN                             P  + YN LI+
Sbjct: 305 SRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIK 364

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           G CK +  +   E+ REM  +G+  +  TY +LI G 
Sbjct: 365 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGF 401



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 7/257 (2%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     +MVK    P+   ++ L+  +    K      + ++M   GI  +  TY+I
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            IN +CR      A ++  +M+  G  P+++T  SL+      NR+ EA  L +  +  G
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V F  L+ G   +     A +L++ M      PD VTY  +++G C++G+ + A 
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M++  I+ D +        YN +I GLCK +  D A +L  +M +KGI PD  TY
Sbjct: 236 NLLNKMEKGKIEADVV-------IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288

Query: 301 FSLIEGIASVDKAAESS 317
             LI  + +  + +++S
Sbjct: 289 NPLISCLCNYGRWSDAS 305



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 7/223 (3%)

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L  ++L + K+ +A  +  +M +    P  + ++ L++   +        SL ++M + G
Sbjct: 46  LSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG 105

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I   + TY+  I    +++++  A  +    +  G  P IV  N+L++G C    I  A 
Sbjct: 106 ISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAV 165

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +L+ +M  M   PD VT+ TL+HG  +  K  EA  L+++M  +G +PD +       TY
Sbjct: 166 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV-------TY 218

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            A+I GLCK  E DLA  LL +M    I  D   Y ++I+G+ 
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC 261



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 66/123 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R ++ D  TY + +  +CK G++E+   +   +   G+ P  VTY T++ G+C KG 
Sbjct: 452 MQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGL 511

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A +   EM + G +P + TYN LI   L +     + +++KEM   G   D+ T+ +
Sbjct: 512 KEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGL 571

Query: 121 LIN 123
           + N
Sbjct: 572 VTN 574



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV+P+  TY + +SG C++G  EEA  +  +MKE+G +P + TYNTLI      G+   
Sbjct: 490 KGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAA 549

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +     EM   G    AST+ L+ + L
Sbjct: 550 SAELIKEMRSCGFAGDASTFGLVTNML 576


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++PD+YT+   ++   K  R++   ++ E+M+     P  +TY+ LID  C  G 
Sbjct: 115 MGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGG 174

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     +M  +G  P   TY  +I  L     + +A  + +EM  +G+V   + YN 
Sbjct: 175 VEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNS 234

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  R G A  A  L  EM+ KG+QP  +T+TSL++ L    R  EA ++F+     G
Sbjct: 235 LIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVG 294

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+ ++N LID  C +  ++ A+ +  E++   + PD  T+N LM G C+ G++ +A 
Sbjct: 295 CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAF 354

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  MKR G  PD          YN LI GL K+   + A +LL EM S G  PD  TY
Sbjct: 355 ILLGDMKRAGCTPDVT-------VYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTY 407

Query: 301 FSLIE 305
            +LI+
Sbjct: 408 NTLID 412



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 163/316 (51%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++   P+  TY   +  +CK G +E+A ++   MK  G  P   TY ++IDG    G+
Sbjct: 150 MQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGH 209

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   +EM  +G++ T   YN LIH L    +   A  + +EM  KG+ PD +T+  
Sbjct: 210 VDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTS 269

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G    G A +A  +  E    G    +  Y  LI  L K  R+ EA ++F      G
Sbjct: 270 LVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDG 329

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD+  FNAL+DG C +G I  AF LL +M R    PD   YNTL+ G  + G+VEEA 
Sbjct: 330 LVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAG 389

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL +M+  G +PD +       TYN LI   CK    + A  L  E+ +KG   +  TY
Sbjct: 390 QLLLEMQSLGYEPDVV-------TYNTLIDESCKGGRIEDALRLFEEISAKGF-ANTVTY 441

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+    +  E+
Sbjct: 442 NTILNGLCMAGRVDEA 457



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 158/319 (49%), Gaps = 39/319 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSRG +P+ +TY S + G+ K G +++A  + E+M   GLV T V YN+LI G    G 
Sbjct: 185 MKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGR 244

Query: 61  LEMAFSFRDEMVKQGIMPTAST-----------------------------------YNL 85
            + A     EM+ +G+ P   T                                   YN+
Sbjct: 245 ADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNV 304

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L   +++ EA ++  E+ E G+VPD  T+N L++G C+ G    AF L  +M   G
Sbjct: 305 LIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAG 364

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P +  Y +LI  L K  R+ EA QL     + G  PD+V +N LID  C  G IE A 
Sbjct: 365 CTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDAL 424

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L +E+   K   + VTYNT+++G C  G+V+EA +L + MK+  +  D +  +P  +TY
Sbjct: 425 RLFEEIS-AKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETV--DGV-IDPDFVTY 480

Query: 266 NALIQGLCKNQEGDLAEEL 284
             L+ G  +    +LA  L
Sbjct: 481 TTLLNGARQAGLSELANSL 499



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 10/307 (3%)

Query: 2   KSRGV-QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           KSR + QP  +       G    G LE++   L++M+ +    TA  YN+LID +   G 
Sbjct: 47  KSRYILQPRIFI--ELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGY 104

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +    M + G+ P   T+N+L++     +++     + +EM  +   P+ ITY+I
Sbjct: 105 TQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSI 164

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+CG  +KA  +  +M  +G +P + TYTS+I  L K   + +A  LFE   ++G
Sbjct: 165 LIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEG 224

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++   V++N+LI G   +G  + A  L +EM    + PD VT+ +L++G    G+  EAR
Sbjct: 225 LVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEAR 284

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+  + +  G   D    N     YN LI  LCK++  D A E+  E+   G+ PD  T+
Sbjct: 285 RIFQEARDVGCALD---VN----LYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTF 337

Query: 301 FSLIEGI 307
            +L++G+
Sbjct: 338 NALMDGL 344



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 126/283 (44%), Gaps = 29/283 (10%)

Query: 63  MAFSFRDEM-VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           MA+ F   +  ++G +P+      L+  L + R+  EA+++L E+ +   +     +  L
Sbjct: 1   MAYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIEL 60

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
             GY   G  +K+      M       T   Y SLI    K     +A  ++      G+
Sbjct: 61  ARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGL 120

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD   FN L++       ++  + L +EM      P+ +TY+ L+   C+ G VE+A +
Sbjct: 121 RPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALK 180

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           +   MK RG +P+  ++                              TR+ YN+LI GL 
Sbjct: 181 VFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLG 240

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           ++   D A +L REM+SKG+ PD  T+ SL+ G+    +A+E+
Sbjct: 241 RSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEA 283


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 172/362 (47%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  P    + S V   CK      A ++L++M++    P  V YN LI   C+ G 
Sbjct: 369 MIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGE 428

Query: 61  L-----------------------------------------EMAFSFRDEMVKQGIMPT 79
           L                                         E A+    EM+  G +P 
Sbjct: 429 LPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPD 488

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            STY+ +I  L    ++  A  + KEM   G+VPD  TY ILI+ + + G  K+A +  D
Sbjct: 489 TSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLD 548

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM+  G +PT++TYT+LI    K  ++  A++LFE  +AKG  P+++ + ALIDG+C +G
Sbjct: 549 EMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSG 608

Query: 200 NIERAFSLLKEM----------------DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           NIE+A  +   M                + +   P+ VTY  L+ G C+  KV++AR LL
Sbjct: 609 NIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLL 668

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + M   G +P+ I        Y+ALI G CK  + D A+E+  +MV  G  P+  TY SL
Sbjct: 669 ETMFVDGCEPNTI-------VYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSL 721

Query: 304 IE 305
           I+
Sbjct: 722 ID 723



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 168/355 (47%), Gaps = 58/355 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+ TY   +  +C   R+E A  + ++MK  G+VP   TY  LID +   G 
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGI 539

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A ++ DEMV+ G  PT  TY  LIH  L  +K+  A+++ + M  KG  P+ ITY  
Sbjct: 540 IKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTA 599

Query: 121 LINGYCRCGNAKKAFSLHDEM--------------IHKGI--QPTMLTYTSLIFVLSKQN 164
           LI+GYC+ GN +KA  ++  M              I   +  +P ++TY +L+  L K +
Sbjct: 600 LIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAH 659

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM------------- 211
           ++ +A  L E     G  P+ ++++ALIDG C    ++ A  +  +M             
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYS 719

Query: 212 ---DRM-------------------KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
              DR+                      P+ V Y  ++ G  +  K +EA +L+  M+ +
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           G KP+ +       TY A+I G  K  + D   EL REM SKG  P+  TY  LI
Sbjct: 780 GCKPNVV-------TYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 157/332 (47%), Gaps = 23/332 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G   +     SF   +C  G+ E+A +++ +M  NG VP   TY+ +I   CN   
Sbjct: 445 MLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASR 504

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF    EM   G++P   TY +LI        + +A + L EM   G  P  +TY  
Sbjct: 505 VENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y +      A  L + MI KG  P ++TYT+LI    K   + +A Q++       
Sbjct: 565 LIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDA 624

Query: 181 MLPD----------------IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            +PD                +V + AL+DG C    ++ A  LL+ M      P+ + Y+
Sbjct: 625 DIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYD 684

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L+ G C+  K++EA+ +  +M   G       +NP   TY++LI  L K++  DL  ++
Sbjct: 685 ALIDGFCKAAKLDEAQEVFHKMVEHG-------YNPNVYTYSSLIDRLFKDKRLDLVLKV 737

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L +M+     P+   Y  +I+G++ V K  E+
Sbjct: 738 LSKMLENSCAPNIVIYTEMIDGLSKVAKTDEA 769



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 156/312 (50%), Gaps = 11/312 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  TYG+ V G+CK  ++++A  +LE M  +G  P  + Y+ LIDG+C    L+ A  
Sbjct: 642 KPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQE 701

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +MV+ G  P   TY+ LI  L  ++++     +L +M E    P+ + Y  +I+G  
Sbjct: 702 VFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +     +A+ L   M  KG +P ++TYT++I    K  ++ +  +LF    +KG  P+ V
Sbjct: 762 KVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFV 821

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LI+  C  G+++ A++LL+EM +        +Y  ++ G  R+  +     LL+++
Sbjct: 822 TYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLG--LLEEV 879

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT--PDDNTYFSLI 304
           ++ G         P  L Y  LI    K    ++A EL +E++S  ++     N Y SLI
Sbjct: 880 EKNGSA-------PIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLI 932

Query: 305 EGIASVDKAAES 316
              +   K   +
Sbjct: 933 YSFSYASKIGHA 944



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 145/320 (45%), Gaps = 22/320 (6%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++  Y   +SG+C+    EEA   L +M+    +P   TY  L+ G  NK  L      
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              M+ +G  P+ + +N L+H          A  +LK+M +    P  + YNILI   C 
Sbjct: 366 LSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICS 425

Query: 128 CGN---------AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            G          A+KA+   +EM+  G     +   S    L    +  +A ++    + 
Sbjct: 426 GGELPGPVTFELAEKAY---NEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMG 482

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G +PD   ++ +I   C    +E AF L KEM    V PD  TY  L+    + G +++
Sbjct: 483 NGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQ 542

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A   LD+M R G +       PT +TY  LI    K ++  +A EL   M++KG  P+  
Sbjct: 543 AHNWLDEMVRDGCE-------PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVI 595

Query: 299 TYFSLIEGIA---SVDKAAE 315
           TY +LI+G     +++KA +
Sbjct: 596 TYTALIDGYCKSGNIEKACQ 615



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P++  Y + + G CK  +L+EA  +  +M E+G  P   TY++LID       L++ 
Sbjct: 675 GCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLV 734

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M++    P    Y  +I  L    K  EA  ++  M EKG  P+ +TY  +I+G
Sbjct: 735 LKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDG 794

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G   K   L  EM  KG  P  +TYT LI        + EA  L E          
Sbjct: 795 FGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKH 854

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +  +I+G+        +  LL+E+++    P  + Y  L+    + G++E A  L  
Sbjct: 855 VSSYCKVIEGY--KREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALEL-- 910

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
               + +    +S    +  Y +LI       +   A EL  +M+  G+ PD  T+  L+
Sbjct: 911 ---HKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLL 967

Query: 305 EGIASVDKAAES 316
            G+  V +  E+
Sbjct: 968 MGLIRVRRWEEA 979



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 4/260 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+ YTY S +  + K+ RL+   ++L +M EN   P  V Y  +IDG      
Sbjct: 706 MVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAK 765

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+     M ++G  P   TY  +I       K+ +  ++ +EMG KG  P+ +TY +
Sbjct: 766 TDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTV 825

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G+  +A++L +EM        + +Y  +I     +   I +  L E     G
Sbjct: 826 LINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVI--EGYKREFILSLGLLEEVEKNG 883

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVEE 238
             P I+++  LID     G +E A  L KE+    M +   +  Y +L++      K+  
Sbjct: 884 SAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGH 943

Query: 239 ARRLLDQMKRRGIKPDHISF 258
           A  L   M R G+ PD  +F
Sbjct: 944 AFELFYDMIRDGVIPDLGTF 963



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 138/332 (41%), Gaps = 37/332 (11%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G    A   L ++K+ G  PT +TYN L+  +     L+ A     EM + G+    
Sbjct: 217 CRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDE 276

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
            T       L    K  EA  ++++   +  VP++I YN +I+G C     ++A    + 
Sbjct: 277 FTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNKMISGLCEASFFEEAMDFLNR 333

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M      P + TY  L+     + ++    ++    +A+G  P   +FN+L+  +C + +
Sbjct: 334 MRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDD 393

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV------EEARRLLDQMKRRGIKPD 254
              A+ LLK+M++ +  P  V YN L+   C  G++      E A +  ++M   G   +
Sbjct: 394 FSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLN 453

Query: 255 HIS----------------------------FNPTRLTYNALIQGLCKNQEGDLAEELLR 286
            ++                            F P   TY+ +I  LC     + A  L +
Sbjct: 454 KVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFK 513

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           EM   G+ PD  TY  LI+  +      ++ N
Sbjct: 514 EMKGTGVVPDVYTYTILIDCFSKAGIIKQAHN 545



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G +P+  TY + + G  K G++++   +  +M   G  P  VTY  LI+  C  G+
Sbjct: 776 MEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGH 835

Query: 61  LEMAFSFRDEMVKQGIMPT-ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A++  +EM KQ   P   S+Y  +I     +R+ + +  +L+E+ + G  P  + Y 
Sbjct: 836 LDEAYALLEEM-KQTYWPKHVSSYCKVIEG--YKREFILSLGLLEEVEKNGSAPIILLYK 892

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT--YTSLIFVLSKQNRMIEADQLFENFL 177
           +LI+ + + G  + A  LH E+I   +        YTSLI+  S  +++  A +LF + +
Sbjct: 893 VLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMI 952

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             G++PD+  F  L+ G       E A  L   + +M ++
Sbjct: 953 RDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDIN 992



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N L+   CR G    A   L ++K  G KP       TR+TYNAL+Q   +  + D A+ 
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKP-------TRMTYNALVQVFLRADKLDTAQL 262

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + REM   G++ D+ T     + +  V K  E+
Sbjct: 263 VHREMSELGLSMDEFTLGFFAQALCKVGKWREA 295


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 51  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLR 110

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 111 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYN 170

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K++ M +A++LF+  L K
Sbjct: 171 TLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVK 230

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G + +A
Sbjct: 231 GLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQA 290

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 291 HGLIDEMXXKGLKPD-------KFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVA 343

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 344 YTALISGLCQEGRSXDA 360



 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 162/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 126 GYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 185

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E  M +A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 186 FRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDG 245

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +L++ L K+  + +A  L +    KG+ PD
Sbjct: 246 HCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPD 305

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 306 KFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLR 365

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 366 EMLSVGLKPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLM 418

Query: 305 EG 306
            G
Sbjct: 419 NG 420



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 135/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE  +++A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 192 MRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGR 251

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN L++ L  +  + +A  ++ EM  KG+ PD  TY  
Sbjct: 252 VDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTT 311

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R  +A+++    L+ G
Sbjct: 312 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVG 371

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 372 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420


>gi|255661020|gb|ACU25679.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 376

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 155/295 (52%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G + ++  +LE  +  G V  A  Y+ +I+G C    
Sbjct: 85  MKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMKGGVLDAFAYSAMINGLCKDSK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG  P ++TY+ LI  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHKVEMALQLWYQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI M N LI G C+ G ++ A SL  +M+     P+ VT+NTLM G  + G V  A 
Sbjct: 265 FKPDIQMHNILIHGLCSVGKMQLALSLYFDMNHWNCAPNLVTHNTLMEGFYKDGDVRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD IS+N T       ++GLC       A   L + ++K I P
Sbjct: 325 VIWARILRNGLQPDIISYNIT-------LKGLCSCNRISGAILFLHDALTKKIVP 372



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 156/292 (53%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A  + + + E+ L   AV YNT+++G+   G ++  F   + M K+G    A
Sbjct: 1   CESGDIDGAEMVYKDIVESKLSLDAVVYNTMLNGFFRVGRIKDCFELWELMGKEGSRNVA 60

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S +N+++  L    K+ E   + + M + G V DSITY IL++G+C+ G+  K+  + + 
Sbjct: 61  S-FNIMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEI 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K +++ +A  +    +  G  P+  ++NALI+G   +  
Sbjct: 120 AEMKGGVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM      P  +TYNTL++G C+  +  EA  L+ +M  +G       +NP
Sbjct: 180 FEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGERFGEAYDLVKEMLEKG-------WNP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ LI+GLC   + ++A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 CVITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGK 284



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 113/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+ ++M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGER 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G  P   TY++LI  L +  K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M H    P ++T+ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNHWNCAPNLVTHNTLMEGFYKDGDVRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+ P  +T
Sbjct: 335 LQPDIISYNITLKGLCSCNRISGAILFLHDALTKKIVPTIIT 376



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 10/219 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + K++ E  +  D++ YN ++NG+ R G  K  F L + M  +G    + ++  ++ 
Sbjct: 9   AEMVYKDIVESKLSLDAVVYNTMLNGFFRVGRIKDCFELWELMGKEG-SRNVASFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG++ ++  +L+  +      
Sbjct: 68  GLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C+  K+++A  +L+ M + G KP+ H+        YNALI GL  + +
Sbjct: 128 DAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHV--------YNALINGLVGSSK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + A  + +EM S   +P   TY +LI G+   ++  E+
Sbjct: 180 FEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGERFGEA 218


>gi|449474629|ref|XP_004154237.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11710, mitochondrial-like [Cucumis sativus]
          Length = 644

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 166/324 (51%), Gaps = 32/324 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P+   Y   ++G CK  RLE A  +L +M + G+     TY TLIDGY  KG+L++AF
Sbjct: 283 VSPNIVAYNCIINGFCKIRRLESAKNVLGEMIKLGIDFNERTYATLIDGYARKGSLDVAF 342

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEMV+  ++P    YN LI+ L ME ++ EA  +L +M  + I+PD  TY+IL  G 
Sbjct: 343 RLCDEMVEMRLIPDTFVYNSLIYWLYMEGELEEASFLLSDMINRRILPDEFTYSILTKGL 402

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G+  KA  +H  ++ + +     TY  LI  + +   +  A QL  + +  G+ PD+
Sbjct: 403 CVSGHLNKALRVHYYIVERSLVRDAFTYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDM 462

Query: 186 VMFNALIDGHCTNGNIERAFSLLKE-----------------------MDRMKVHP--DE 220
           V +   +DGHC  G IE A  +  +                       +D+++ +   D 
Sbjct: 463 VTYGTPVDGHCKEGKIEAAVQIYDKAVVYNSILDGLCKQGSIYAAKLLVDKLQQNGFLDP 522

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           VTYNTL+HG C  G++E+A  L  +M   G   + +S       YN +I  LCK      
Sbjct: 523 VTYNTLLHGFCVNGEIEKAFALFLEMINVGSLVNIVS-------YNIMINFLCKMGLIQQ 575

Query: 281 AEELLREMVSKGITPDDNTYFSLI 304
           A EL+R M S+GI PD  TY +LI
Sbjct: 576 AMELMRAMSSQGIIPDLITYTTLI 599



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 16/289 (5%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G  ++   M ++M  +G      T+N +I   CN+  L  A      M+K  I P    +
Sbjct: 193 GETDKFXNMYKEMIASGYSENVNTFNLIIYALCNECKLLEAIYVVYLMLKIEIWPNVVXF 252

Query: 84  NLLIHELLMERKMVEADDMLK-----EMGEKGIV-PDSITYNILINGYCRCGNAKKAFSL 137
           N++I +     KM E D  LK     E+   G V P+ + YN +ING+C+    + A ++
Sbjct: 253 NMIIDK---ANKMGEMDLALKLTRNIEVISGGSVSPNIVAYNCIINGFCKIRRLESAKNV 309

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
             EMI  GI     TY +LI   +++  +  A +L +  +   ++PD  ++N+LI     
Sbjct: 310 LGEMIKLGIDFNERTYATLIDGYARKGSLDVAFRLCDEMVEMRLIPDTFVYNSLIYWLYM 369

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G +E A  LL +M   ++ PDE TY+ L  G C  G + +A R+   +  R +  D   
Sbjct: 370 EGELEEASFLLSDMINRRILPDEFTYSILTKGLCVSGHLNKALRVHYYIVERSLVRD--- 426

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                 TYN LI  + +++    A++LL  M+  GI PD  TY + ++G
Sbjct: 427 ----AFTYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDG 471



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 27/179 (15%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASR--------------------------MLEQMKE 38
           G++PD  TYG+ V G CKEG++E A +                          +++++++
Sbjct: 457 GIKPDMVTYGTPVDGHCKEGKIEAAVQIYDKAVVYNSILDGLCKQGSIYAAKLLVDKLQQ 516

Query: 39  NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE 98
           NG +   VTYNTL+ G+C  G +E AF+   EM+  G +    +YN++I+ L     + +
Sbjct: 517 NGFLD-PVTYNTLLHGFCVNGEIEKAFALFLEMINVGSLVNIVSYNIMINFLCKMGLIQQ 575

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           A ++++ M  +GI+PD ITY  LI  +     ++    LH  M+ KG  P   TY S +
Sbjct: 576 AMELMRAMSSQGIIPDLITYTTLITNFVETCGSEDVIELHGYMMLKGAVPDRKTYRSFV 634



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 11/234 (4%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R +  D++TY   ++ M +   +  A ++L  M   G+ P  VTY T +DG+C +G +E 
Sbjct: 421 RSLVRDAFTYNILINYMFQSRNIAGAKQLLSSMIVGGIKPDMVTYGTPVDGHCKEGKIEA 480

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    D+         A  YN ++  L  +  +  A  ++ ++ + G + D +TYN L++
Sbjct: 481 AVQIYDK---------AVVYNSILDGLCKQGSIYAAKLLVDKLQQNGFL-DPVTYNTLLH 530

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G  +KAF+L  EMI+ G    +++Y  +I  L K   + +A +L     ++G++P
Sbjct: 531 GFCVNGEIEKAFALFLEMINVGSLVNIVSYNIMINFLCKMGLIQQAMELMRAMSSQGIIP 590

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           D++ +  LI         E    L   M      PD  TY + +   C Q   E
Sbjct: 591 DLITYTTLITNFVETCGSEDVIELHGYMMLKGAVPDRKTYRSFV-SPCLQEHTE 643



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 40/289 (13%)

Query: 21  CKEGR-LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           C + R +E A  ++ +++  G   T   +N  ++     G  +   +   EM+  G    
Sbjct: 154 CTQLRSVEGAYDVIRKLRLEGFWVTIHAWNNFLNLLLKLGETDKFXNMYKEMIASGYSEN 213

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
            +T+NL+I+ L  E K++EA  ++  M +  I P+ + +N++I+   + G    A  L  
Sbjct: 214 VNTFNLIIYALCNECKLLEAIYVVYLMLKIEIWPNVVXFNMIIDKANKMGEMDLALKL-- 271

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
                                    R IE            + P+IV +N +I+G C   
Sbjct: 272 ------------------------TRNIEVIS------GGSVSPNIVAYNCIINGFCKIR 301

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            +E A ++L EM ++ +  +E TY TL+ G  R+G ++ A RL D+M    + PD     
Sbjct: 302 RLESAKNVLGEMIKLGIDFNERTYATLIDGYARKGSLDVAFRLCDEMVEMRLIPD----- 356

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                YN+LI  L    E + A  LL +M+++ I PD+ TY  L +G+ 
Sbjct: 357 --TFVYNSLIYWLYMEGELEEASFLLSDMINRRILPDEFTYSILTKGLC 403



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 10/192 (5%)

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G   K  +++ EMI  G    + T+  +I+ L  + +++EA  +    L   + P++V F
Sbjct: 193 GETDKFXNMYKEMIASGYSENVNTFNLIIYALCNECKLLEAIYVVYLMLKIEIWPNVVXF 252

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRM---KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           N +ID     G ++ A  L + ++ +    V P+ V YN +++G C+  ++E A+ +L +
Sbjct: 253 NMIIDKANKMGEMDLALKLTRNIEVISGGSVSPNIVAYNCIINGFCKIRRLESAKNVLGE 312

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M + G     I FN    TY  LI G  +    D+A  L  EMV   + PD   Y SLI 
Sbjct: 313 MIKLG-----IDFNER--TYATLIDGYARKGSLDVAFRLCDEMVEMRLIPDTFVYNSLIY 365

Query: 306 GIASVDKAAESS 317
            +    +  E+S
Sbjct: 366 WLYMEGELEEAS 377


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 164/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+    +PD  TY   +  +CK+  L+ A  +L +MK+  + P   TYN+LIDG C  G 
Sbjct: 194 MEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQ 253

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E   +   EMV   I P   T+++LI  L  E K+ +AD++++ M EKG+ PD ITY+ 
Sbjct: 254 WEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSA 313

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYC  G   +A  + + +  KGI+P + +Y+ LI    K+  + +A QLF     KG
Sbjct: 314 IMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKG 373

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V ++ ++ G    G I  A  +  EM R+   PD   ++TL+ G  + G VEEA 
Sbjct: 374 LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAM 433

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++R   +  +ISF      Y  +I GLCKN     A  +  ++ S G+ PD  TY
Sbjct: 434 LLFSKLERNR-EDTNISF------YTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTY 486

Query: 301 FSLIEG 306
             +I G
Sbjct: 487 NVMITG 492



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 167/307 (54%), Gaps = 13/307 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + P+ +T+   + G+CKEG++E+A  ++  M E G+ P  +TY+ ++DGYC +G 
Sbjct: 264 MVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQ 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + +  +GI P   +Y++LI+    ++ + +A  +  E+ +KG+ PD++TY+ 
Sbjct: 324 VDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYST 383

Query: 121 LINGYC---RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +++G     R G+AKK F   DEM+  G  P +  +++L+F   K   + EA  LF    
Sbjct: 384 ILHGLIEVGRIGDAKKIF---DEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLE 440

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
                 +I  +  +I+G C N  +  A ++ +++  + + PD  TYN ++ G CR+G  +
Sbjct: 441 RNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFD 500

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           E + +L +M+  G   ++I       TYN ++QG  ++ +       ++EM  +G + D 
Sbjct: 501 EVKGILRKMEDNGCPANNI-------TYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDA 553

Query: 298 NTYFSLI 304
            T   LI
Sbjct: 554 TTTGVLI 560



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 169/303 (55%), Gaps = 8/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKGNLEM 63
           G+  +  T+ + + G+  E ++ +A  + +++ +E    P  V Y T+++G   +G+ E 
Sbjct: 127 GIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEK 186

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
             S    M +    P   TY+++I  L  +  +  A ++L EM +K I P+  TYN LI+
Sbjct: 187 TLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLID 246

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G  +K  +L  EM++  I P + T++ LI  L K+ ++ +AD++  + + KG+ P
Sbjct: 247 GLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEP 306

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DI+ ++A++DG+C  G ++RA  +   +    + P+  +Y+ L++G C++  + +A +L 
Sbjct: 307 DIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLF 366

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            ++ ++G+KPD +       TY+ ++ GL +      A+++  EM+  G TPD   + +L
Sbjct: 367 GEISQKGLKPDTV-------TYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTL 419

Query: 304 IEG 306
           + G
Sbjct: 420 LFG 422



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 155/317 (48%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+           +  C   R++ A  +L    + G+    VT+NTL+ G   +  
Sbjct: 88  MRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENK 147

Query: 61  LEMAFSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +  A     ++V++ I  P    Y  +++ L       +   +L+ M +    PD  TY+
Sbjct: 148 VTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYS 207

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I+  C+  N   A +L +EM  K I P + TY SLI  L K  +  +   L    +  
Sbjct: 208 IVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNL 267

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + P++  F+ LIDG C  G +E A  +++ M    V PD +TY+ +M G C +G+V+ A
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRA 327

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           RR+ + ++ +GIKP+  S       Y+ LI G CK +    A +L  E+  KG+ PD  T
Sbjct: 328 RRVFNVLRDKGIKPNIFS-------YSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVT 380

Query: 300 YFSLIEGIASVDKAAES 316
           Y +++ G+  V +  ++
Sbjct: 381 YSTILHGLIEVGRIGDA 397



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 135/258 (52%), Gaps = 10/258 (3%)

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI-VPDSITYN 119
           L+ A S    MV+   +P+   ++ L   ++  +       + +EM   GI + DSI  N
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSI-LN 101

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+ N YC       AFS+    +  GI   ++T+ +L+  L  +N++ +A  LF+  + +
Sbjct: 102 IVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVRE 161

Query: 180 GML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            +  P+ VM+  +++G    G+ E+  SLL+ M++    PD  TY+ ++   C+   ++ 
Sbjct: 162 KICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDA 221

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  LL++MK++ I P+         TYN+LI GLCK  + +  + LL EMV+  I P+ +
Sbjct: 222 AINLLNEMKQKNIPPN-------IFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVH 274

Query: 299 TYFSLIEGIASVDKAAES 316
           T+  LI+G+    K  ++
Sbjct: 275 TFSILIDGLCKEGKVEDA 292



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 94/193 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  +G++PD+ TY + + G+ + GR+ +A ++ ++M   G  P    ++TL+ GY   G 
Sbjct: 369 ISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGL 428

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     ++ +       S Y ++I+ L    ++ EA  + +++   G++PD  TYN+
Sbjct: 429 VEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNV 488

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+CR G   +   +  +M   G     +TY  ++    + N++ E     +    +G
Sbjct: 489 MITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRG 548

Query: 181 MLPDIVMFNALID 193
              D      LI+
Sbjct: 549 FSFDATTTGVLIN 561



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G+ PD  TY   ++G C+EG  +E   +L +M++NG     +TYN ++ G+     
Sbjct: 474 LPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNK 533

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90
           +    SF  EM  +G    A+T  +LI+ L
Sbjct: 534 ISEIVSFMKEMAGRGFSFDATTTGVLINVL 563


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 167/335 (49%), Gaps = 29/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +T        C++GR+  A+  L++M+E GL    V Y+ ++DGYC  G 
Sbjct: 155 MRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQ 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIVPDSITYN 119
            E+A      +  +G+ P   TY LL+     E +M EA+ ++KE+ E + IV D + Y 
Sbjct: 215 TEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYG 274

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LINGYC+ G  + A  + DEMI  G+Q  M  Y ++I    K  RM E ++L +    +
Sbjct: 275 ALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYR 334

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D   +N L+DG+C  G + +AF     M R       +TYNTL++G C +G +++A
Sbjct: 335 GVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDA 394

Query: 240 RRLLDQMKRRGIKPDHIS--------FNPTR--------------------LTYNALIQG 271
            +L   M +RG+ P+ IS        F   +                    +T N +I G
Sbjct: 395 LKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVING 454

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LCKN+    AEEL   M       D  TY +LI+G
Sbjct: 455 LCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDG 489



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 165/325 (50%), Gaps = 33/325 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P++ TYG+ ++G CKEG L +A  +  +M E GL P     + L+  +  +G 
Sbjct: 541 MSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGK 600

Query: 61  LEMAFSFRDEMVKQGIMP--TAST------------------------YNLLIHELLMER 94
           ++ A     ++    ++   +AST                        +N++I  L    
Sbjct: 601 VDEANLVLQKLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLG 660

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           ++ +A ++ +++  KG +PD+ TY+ LI+G    G+   AF L DEM+   + P ++TY 
Sbjct: 661 RVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYN 720

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           SLI+ L K   +  A  LF    +KG+ P+ + +N LIDGHC +GN   AF L ++M + 
Sbjct: 721 SLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKE 780

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + P   TY  L+HG C QG +EEA +LLDQM    + P+ I       TY  LIQG  +
Sbjct: 781 GIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFI-------TYWTLIQGYAR 833

Query: 275 NQEGDLAEELLREMVSKGITPDDNT 299
                   +L  EM   G+ P + T
Sbjct: 834 CGNMKAITKLYNEMHICGLLPANWT 858



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 168/330 (50%), Gaps = 33/330 (10%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG+  +  T  + ++G+CK  R+ EA  +  +MKE      ++TY TLIDGYC  G+L 
Sbjct: 438 ARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLG 497

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A   R EM   G +P+   +N  I  L + ++  + +D+  EM  KG+ P+++TY  LI
Sbjct: 498 RATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALI 557

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+C+ GN   A  L+ EM+ KG++P +   + L+    ++ ++ EA+ + +      M+
Sbjct: 558 AGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMI 617

Query: 183 PDI--------------------------VMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
            D                           +M+N +I G C  G +  A +L +++     
Sbjct: 618 QDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGF 677

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD  TY++L+HG    G ++ A  L D+M    + P+ +       TYN+LI GLCK+ 
Sbjct: 678 IPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIV-------TYNSLIYGLCKSC 730

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               A  L  ++ SKGI+P+  TY +LI+G
Sbjct: 731 NVSRAVSLFNKLQSKGISPNAITYNTLIDG 760



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           ++ +G+ P+  TY   V G CKEGR+EEA ++++++KEN  +V   V Y  LI+GYC +G
Sbjct: 225 LQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRG 284

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +E A   RDEM+  G+      YN +I+      +M E + +L+    +G+  D  +YN
Sbjct: 285 RMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYN 344

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYCR G   KAF   D M+  G   T LTY +L+     +  + +A +L+   L +
Sbjct: 345 TLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKR 404

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ +  + L+DG    G  E+A +L KE     +  + VT NT+++G C+  ++ EA
Sbjct: 405 GVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEA 464

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L  +MK      D        LTY  LI G CK  +   A ++  EM + G  P    
Sbjct: 465 EELFHRMKEWSCPCD-------SLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEM 517

Query: 300 YFSLIEGI 307
           + S I G+
Sbjct: 518 FNSFITGL 525



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 167/334 (50%), Gaps = 33/334 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  P    + SF++G+    +  + + +  +M   GL P  VTY  LI G+C +GN
Sbjct: 506 MENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGN 565

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS----- 115
           L  A     EMV++G+ P     ++L+     E K+ EA+ +L+++ +  ++ D      
Sbjct: 566 LHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCSASTL 625

Query: 116 ---------------------ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
                                I +NI+I G C+ G    A +L +++  KG  P   TY+
Sbjct: 626 NIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYS 685

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           SLI   S    +  A  L +  L+  + P+IV +N+LI G C + N+ RA SL  ++   
Sbjct: 686 SLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSK 745

Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            + P+ +TYNTL+ G C+ G   EA +L  +M + GI+P       T  TY  LI GLC 
Sbjct: 746 GISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQP-------TVFTYTILIHGLCT 798

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
               + A +LL +M+   + P+  TY++LI+G A
Sbjct: 799 QGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYA 832



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 160/301 (53%), Gaps = 17/301 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GVQ + + Y + ++G CK GR+ E  ++L+  +  G+     +YNTL+DGYC KG 
Sbjct: 296 MIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGF 355

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   D MV+ G   T  TYN L++       + +A  +   M ++G+VP+ I+ + 
Sbjct: 356 MTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCST 415

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ + G  ++A +L  E + +G+   ++T  ++I  L K  RM EA++LF       
Sbjct: 416 LLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWS 475

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC---RQGKVE 237
              D + +  LIDG+C  G++ RA  +  EM+ +   P    +N+ + G     + GKV 
Sbjct: 476 CPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVN 535

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE--LLREMVSKGITP 295
           + R    +M  +G+ P+ +       TY ALI G CK  EG+L +   L  EMV KG+ P
Sbjct: 536 DIRV---EMSAKGLSPNTV-------TYGALIAGWCK--EGNLHDACILYFEMVEKGLKP 583

Query: 296 D 296
           +
Sbjct: 584 N 584



 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 165/360 (45%), Gaps = 54/360 (15%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RGV  D Y+Y + V G C++G + +A    + M  NG   T +TYNTL++G+C++G ++ 
Sbjct: 334 RGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDD 393

Query: 64  AFSFRDEMVKQGIMPT-----------------------------------ASTYNLLIH 88
           A      M+K+G++P                                      T N +I+
Sbjct: 394 ALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVIN 453

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            L   R+M EA+++   M E     DS+TY  LI+GYC+ G+  +A  +  EM + G  P
Sbjct: 454 GLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVP 513

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           ++  + S I  L    +  + + +     AKG+ P+ V + ALI G C  GN+  A  L 
Sbjct: 514 SVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILY 573

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD------------HI 256
            EM    + P+    + L+    R+GKV+EA  +L ++    +  D            HI
Sbjct: 574 FEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCSASTLNIGKVAHI 633

Query: 257 -------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
                  +    ++ +N +I GLCK      A  L  ++  KG  PD+ TY SLI G ++
Sbjct: 634 IESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSA 693



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 163/341 (47%), Gaps = 32/341 (9%)

Query: 10  SYTYGSF---VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           S++  SF   +      G+L++A  + ++M + G   T  + N L++     G++  A +
Sbjct: 91  SFSAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVA 150

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M   G +P   T  ++      + ++  A D LKEM E G+  + + Y+ +++GYC
Sbjct: 151 VFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYC 210

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-KGMLPDI 185
           R G  + A  L   +  KG+ P ++TYT L+    K+ RM EA+++ +     + ++ D 
Sbjct: 211 RIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDE 270

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V + ALI+G+C  G +E A  +  EM    V  +   YNT+++G C+ G++ E  +LL  
Sbjct: 271 VAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQA 330

Query: 246 MKRRGIKPDHISFNP----------------------------TRLTYNALIQGLCKNQE 277
            + RG+  D  S+N                             T LTYN L+ G C    
Sbjct: 331 NEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGA 390

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            D A +L   M+ +G+ P++ +  +L++G     K  ++ N
Sbjct: 391 IDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALN 431


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G   +A       +E+ L     T   +++      
Sbjct: 48  LETKGTQRSDIYVFSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLK 107

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 108 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 167

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 168 TLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVK 227

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDG C NG ++ A  + K M    + PD +TYNTL++G C++G +++A
Sbjct: 228 GLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQA 287

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 288 HDLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVA 340

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 341 YTALISGLCQEGRSVDA 357



 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 161/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 123 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 182

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A+++  EM  KG++P+ +T+  LI+G
Sbjct: 183 FRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDG 242

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A  ++  M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 243 RCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 302

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 303 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 362

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M    +KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 363 EMLSVDLKPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 415

Query: 305 EG 306
            G
Sbjct: 416 NG 417



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 134/229 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GL+P  VT+ TLIDG C  G 
Sbjct: 189 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGR 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 249 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTT 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+  
Sbjct: 309 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVD 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 369 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 131 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 183

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 184 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 218


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +J+      
Sbjct: 56  LETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L D+M  +G+KPD       ++TY  LI G CK    + A E  + M+ + I  DD  
Sbjct: 296 QDLTDEMSMKGLKPD-------KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D+  EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 166/310 (53%), Gaps = 10/310 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G++PD   Y S V+G+C  GR  +A  +L  M +  + P  +T+N LID +  +G 
Sbjct: 203 MENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGK 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EM++  I P   TY  LI+   ME  + EA  M   M  KG  PD + Y  
Sbjct: 263 FLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTS 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+C     A  +  EM  KG+    +TYT+LI    +  +   A ++F + +++G
Sbjct: 323 LINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK---VHPDEVTYNTLMHGRCRQGKVE 237
           + P+I  +N L+   C NG +++A  + ++M + +   V P+  TYN L+HG C  GK+E
Sbjct: 383 VPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLE 442

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  + + M++R         +   +TY  +IQG+CK  +   A  L   + SKG+ P+ 
Sbjct: 443 KALMVFEDMRKR-------EMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNV 495

Query: 298 NTYFSLIEGI 307
            TY ++I G+
Sbjct: 496 VTYTTMISGL 505



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 159/311 (51%), Gaps = 10/311 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  T+ S ++G C   R+EEA  M+ QM E G+ P  V Y T+ID  C  G+
Sbjct: 133 MMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH 192

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S  D+M   GI P    Y  L++ L    +  +AD +L+ M ++ I PD IT+N 
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G    A  L++EMI   I P + TYTSLI     +  + EA Q+F     KG
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V + +LI+G C    ++ A  +  EM +  +  + +TY TL+ G  + GK   A+
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK---GITPDD 297
            +   M  RG+ P+         TYN L+  LC N +   A  +  +M  +   G+ P+ 
Sbjct: 373 EVFSHMVSRGVPPN-------IRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNI 425

Query: 298 NTYFSLIEGIA 308
            TY  L+ G+ 
Sbjct: 426 WTYNVLLHGLC 436



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 7/305 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ + K  + +    + + ++  G+     T N L++ +C      +A SF
Sbjct: 70  PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T+  LI+   +  +M EA  M+ +M E GI PD + Y  +I+  C+
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCK 189

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+   A SL D+M + GI+P ++ YTSL+  L    R  +AD L      + + PD++ 
Sbjct: 190 NGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVIT 249

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FNALID     G    A  L  EM RM + P+  TY +L++G C +G V+EAR++   M+
Sbjct: 250 FNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLME 309

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G  PD ++       Y +LI G CK ++ D A ++  EM  KG+T +  TY +LI+G 
Sbjct: 310 TKGCFPDVVA-------YTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGF 362

Query: 308 ASVDK 312
             V K
Sbjct: 363 GQVGK 367



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 162/312 (51%), Gaps = 7/312 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  D YT    ++  C+  +   AS  L +M + G  P  VT+ +LI+G+C    +E A
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S  ++MV+ GI P    Y  +I  L     +  A  +  +M   GI PD + Y  L+NG
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C  G  + A SL   M  + I+P ++T+ +LI    K+ + ++A++L+   +   + P+
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPN 281

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I  + +LI+G C  G ++ A  +   M+     PD V Y +L++G C+  KV++A ++  
Sbjct: 282 IFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFY 341

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M ++G+  + I       TY  LIQG  +  + ++A+E+   MVS+G+ P+  TY  L+
Sbjct: 342 EMSQKGLTGNTI-------TYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394

Query: 305 EGIASVDKAAES 316
             +    K  ++
Sbjct: 395 HCLCYNGKVKKA 406



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 7/259 (2%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           KGN   A SF   +     +     Y  ++   L   +  EA D+   M E   +P  I 
Sbjct: 15  KGNSGKALSFSRLLDLSFWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSIID 74

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +  L+N   +        +L D +   G+   + T   L+    + ++   A       +
Sbjct: 75  FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
             G  PDIV F +LI+G C    +E A S++ +M  M + PD V Y T++   C+ G V 
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVN 194

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  L DQM+  GI+PD +        Y +L+ GLC +     A+ LLR M  + I PD 
Sbjct: 195 YALSLFDQMENYGIRPDVV-------MYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDV 247

Query: 298 NTYFSLIEGIASVDKAAES 316
            T+ +LI+      K  ++
Sbjct: 248 ITFNALIDAFVKEGKFLDA 266



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 38/211 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G  PD   Y S ++G CK  ++++A ++  +M + GL    +TY TLI G+   G 
Sbjct: 308 METKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGK 367

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSIT 117
             +A      MV +G+ P   TYN+L+H L    K+ +A  + ++M ++   G+ P+  T
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWT 427

Query: 118 YNILINGYC-----------------------------------RCGNAKKAFSLHDEMI 142
           YN+L++G C                                   + G  K A +L   + 
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP 487

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
            KG++P ++TYT++I  L ++    EA  LF
Sbjct: 488 SKGVKPNVVTYTTMISGLFREGLKHEAHVLF 518


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 158/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM   G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+         TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-------IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +I+      
Sbjct: 56  LETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L D+M  +G+KPD       ++TY  LI G CK    + A E  + M+ + I  DD  
Sbjct: 296 QDLTDEMSMKGLKPD-------KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 133/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++E+A+ + ++M  NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D+  EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD +TY   + G+CK GR   A RML++M+E G  P  VTY+TL+  +C  G 
Sbjct: 342 MGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGM 401

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +  D+M  +G    +  YN +I+ L  + K+ EA  +++EM  +G  PD  TYN 
Sbjct: 402 WDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNT 461

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C      +A  +   ++ +G+    +TY +LI  L    R  E  +L    +  G
Sbjct: 462 IIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHG 521

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+V +N LI   C  GN++R+  LL+EM    + P+  +YN L++  C+ GKV +A 
Sbjct: 522 CPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDAL 581

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G+ PD +       TYN LI GLCK      A  LL ++ ++ + PD  TY
Sbjct: 582 ELSKEMLNQGLTPDIV-------TYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTY 634

Query: 301 FSLIE 305
             LI 
Sbjct: 635 NILIS 639



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 160/341 (46%), Gaps = 38/341 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK-------------------------------EGRLEEA 29
           M   G  P   TYG  + G+C+                               EG+L  A
Sbjct: 276 MMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARA 335

Query: 30  SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89
           + + E M   G  P   TYN L+ G C  G    A    DEM ++G  P   TY+ L+H 
Sbjct: 336 TELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHS 395

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
                   +A  ML +M  KG   +S  YN +I    + G   +A  L  EM  +G +P 
Sbjct: 396 FCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPD 455

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + TY ++I+ L   ++M EA+ +F N L +G++ + + +N LI     +G  +    L  
Sbjct: 456 ICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLAN 515

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM       D V+YN L+   C++G V+ +  LL++M  +GIKP++ S       YN LI
Sbjct: 516 EMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFS-------YNMLI 568

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
             LCK  +   A EL +EM+++G+TPD  TY +LI G+  V
Sbjct: 569 NELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKV 609



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 143/258 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G   +S  Y   +  + K+G+L+EA R++++MK  G  P   TYNT+I   CN   
Sbjct: 412 MSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQ 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      ++++G++    TYN LIH LL   +  E   +  EM   G   D ++YN 
Sbjct: 472 MDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNG 531

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ GN  ++  L +EM+ KGI+P   +Y  LI  L K  ++ +A +L +  L +G
Sbjct: 532 LIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 591

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N LI+G C  G    A +LL+++    VHPD VTYN L+   C+   +++A 
Sbjct: 592 LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAS 651

Query: 241 RLLDQMKRRGIKPDHISF 258
            LLD+    GI P+  ++
Sbjct: 652 MLLDKAVSGGIVPNERTW 669



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 158/311 (50%), Gaps = 11/311 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P ++T+G     +C+ GR  +A  +L  M  +G VP AV Y T+I     +G +  A 
Sbjct: 176 VPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAA 235

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +  DEM+  G     +T+N ++  L     + EA  ++  M   G  P  +TY  L+ G 
Sbjct: 236 TLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGL 295

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR   A +A++    M+ +  +  ++   ++I     + ++  A +L+E   +KG  PD+
Sbjct: 296 CRTRQADEAYA----MLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDV 351

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             +N L+ G C  G    A  +L EM+     P+ VTY+TL+H  CR G  ++AR +LDQ
Sbjct: 352 HTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 411

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G       F+     YN +I  L K+ + D A  L++EM S+G  PD  TY ++I 
Sbjct: 412 MSAKG-------FSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIY 464

Query: 306 GIASVDKAAES 316
            + + D+  E+
Sbjct: 465 HLCNNDQMDEA 475



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 121/233 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+G +PD  TY + +  +C   +++EA  +   + E G+V   +TYNTLI    + G 
Sbjct: 447 MKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGR 506

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +      +EMV  G      +YN LI  L  E  +  +  +L+EM  KGI P++ +YN+
Sbjct: 507 WQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNM 566

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C+ G  + A  L  EM+++G+ P ++TY +LI  L K      A  L E    + 
Sbjct: 567 LINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNEN 626

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           + PDIV +N LI  HC    ++ A  LL +     + P+E T+  ++    RQ
Sbjct: 627 VHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNFVRQ 679



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 117/280 (41%), Gaps = 51/280 (18%)

Query: 64  AFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDML--KEMGEKGIVPDSITYNI 120
           A    D+M ++  + P+  +YN ++  L   R    AD +L  + M    + P + T+ +
Sbjct: 128 ALHLLDQMPRRFAVTPSFRSYNAVLSTL--ARADCHADALLLYRRMLRDRVPPTTFTFGV 185

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
                CR G A+ A +L   M   G  P  + Y ++I  L  Q  + EA  L +  L  G
Sbjct: 186 AARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMG 245

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH---PDEVTYNTLMHGRCR----- 232
              D+  FN ++ G C  G++  A  L+   DRM +H   P  VTY  L+ G CR     
Sbjct: 246 CAADVNTFNDVVLGLCGLGHVREAARLV---DRMMMHGCTPSVVTYGFLLRGLCRTRQAD 302

Query: 233 --------------------------QGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTY 265
                                     +GK+  A  L + M  +G  PD H        TY
Sbjct: 303 EAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVH--------TY 354

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           N L+ GLCK      A  +L EM  KG  P+  TY +L+ 
Sbjct: 355 NILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLH 394


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 54  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPLDTCRKVLEHLMKLK 113

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+     E  +  A  +L  + + G+ P  +++N
Sbjct: 114 YFKLVWGFYKEILECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFN 173

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LINGY R G+  + F L   M   G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 174 TLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 233

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           GM+P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G++++A
Sbjct: 234 GMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQA 293

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M   G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 294 HDLIDEMSMEGLKPD-------KITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVV 346

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 347 YTALISGLCQEGRSVDA 363



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 145/250 (58%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  +L  + + GL P+ V++NTLI+GY   G+L+  
Sbjct: 129 GYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEG 188

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+++  EM +KG+VP+ +T+  LI+G
Sbjct: 189 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDG 248

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    +G+ PD
Sbjct: 249 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPD 308

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 309 KITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLR 368

Query: 245 QMKRRGIKPD 254
           +M   G+KP+
Sbjct: 369 EMLSVGLKPN 378



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 116/184 (63%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M + G+VP  VT+ TLIDG+C  G 
Sbjct: 195 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGR 254

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  + ++ +A D++ EM  +G+ PD ITY  
Sbjct: 255 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTT 314

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 315 LIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVG 374

Query: 181 MLPD 184
           + P+
Sbjct: 375 LKPN 378



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 70/115 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ + PD  TY + + G+CK+G L++A  ++++M   GL P  +TY TLIDG C +G+
Sbjct: 265 MLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGD 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           +E AF  +  M+++ I      Y  LI  L  E + V+A+ ML+EM   G+ P++
Sbjct: 325 METAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNT 379


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 159/309 (51%), Gaps = 13/309 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG++ +  T    ++  C    ++    +  +  + G  P  V + TLIDG C  G 
Sbjct: 66  MEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGK 125

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E+A     EM   G +P   T N L+     + K+ +   +   M  KG+ PD  +Y+I
Sbjct: 126 TELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSI 185

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            INGYC+     +A  L DEM H+G+ P  +TY +LI  L +  R  +A  LF    A G
Sbjct: 186 FINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACG 245

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI+ ++ L+DG C  GN++    L +EM R  V PD V Y  +++G CR  KV++A+
Sbjct: 246 LSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAK 305

Query: 241 RLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDD 297
            +L ++   G+KPD H        TY AL+ GLC+  EG + E   L R+M   G  P  
Sbjct: 306 EVLSRLIVEGLKPDVH--------TYTALVDGLCR--EGSIIEALRLFRKMEEDGCMPGS 355

Query: 298 NTYFSLIEG 306
            +Y  L++G
Sbjct: 356 CSYNVLLQG 364



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 132/253 (52%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD  T  S + G C +G++++  ++   M   GL P   +Y+  I+GYC    ++ A
Sbjct: 140 GCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEA 199

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEM  +G++P A TYN LI  L    +  +A  + ++M   G+ PD + Y+ L++G
Sbjct: 200 MELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDG 259

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ GN  +   L  EM  + ++P ++ YT +I  + +  ++ +A ++    + +G+ PD
Sbjct: 260 FCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPD 319

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  + AL+DG C  G+I  A  L ++M+     P   +YN L+ G  +        +L+ 
Sbjct: 320 VHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIH 379

Query: 245 QMKRRGIKPDHIS 257
           +M  RG   D ++
Sbjct: 380 EMADRGFYADAVT 392



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 131/250 (52%), Gaps = 7/250 (2%)

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           GNL+ A +  + M+ +   P    +N L+  ++  +K      + KEM  +GI  +  T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +ILIN +C   +    FS+  + + +G +P ++ +T+LI  + +  +   A  L +    
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGL 138

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G +PD+V  N+L+ G+C+ G I++   +   M    + PD  +Y+  ++G C+  K++E
Sbjct: 139 VGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDE 198

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L D+M  RG+ P+ +       TYN LI+ LC+      A+ L R+M + G++PD  
Sbjct: 199 AMELFDEMSHRGVVPNAV-------TYNTLIKALCQALRPRDAQVLFRKMCACGLSPDIL 251

Query: 299 TYFSLIEGIA 308
            Y +L++G  
Sbjct: 252 AYSTLLDGFC 261



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 7/293 (2%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           G L++A     +M +    P  + +N L+         E   S   EM  +GI     T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           ++LI+       +     +  +  ++G  PD + +  LI+G CR G  + A  L  EM  
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGL 138

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P ++T  SL+     Q ++ +  ++F   ++KG+ PD+  ++  I+G+C    I+ 
Sbjct: 139 VGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDE 198

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  L  EM    V P+ VTYNTL+   C+  +  +A+ L  +M   G+ PD        L
Sbjct: 199 AMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDI-------L 251

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            Y+ L+ G CK    D    L +EM  + + PD   Y  +I G+    K  ++
Sbjct: 252 AYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDA 304



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 35/228 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M S+G++PD Y+Y  F++G CK  +++EA  + ++M   G+VP AVTYNTLI        
Sbjct: 171 MVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALR 230

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      DG+C +GNL+       EM ++ + P    Y +
Sbjct: 231 PRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTI 290

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I+ +   RK+ +A ++L  +  +G+ PD  TY  L++G CR G+  +A  L  +M   G
Sbjct: 291 IINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDG 350

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
             P   +Y  L+    + N      QL      +G   D V    L D
Sbjct: 351 CMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKD 398


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 168/342 (49%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++GV PD++TY + + G    G+ +EA R+ ++M+   ++P  V  NTL+   C  G 
Sbjct: 282 MVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGK 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M  +G  P   +Y ++++    +  +V+  D+   M   GI PD  T+N+
Sbjct: 342 IKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNV 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y  CG   KA  + +EM   G++P ++TY ++I  L +  +M +A + F   + +G
Sbjct: 402 LIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE--------------------------MDRM 214
           ++PD   ++ LI G CT+G++ +A  L+ E                          MD  
Sbjct: 462 VVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQ 521

Query: 215 KV---------HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +         HPD V YN LM G C  GK+E+A R+ D M   GI+P+ +        Y
Sbjct: 522 NIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG-------Y 574

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             L+ G CK    D    L REM+ KGI P    Y  +I+G+
Sbjct: 575 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616



 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 173/351 (49%), Gaps = 44/351 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
           G  PD ++Y   +  +C +G+  +A  +L  M E G V  P  V YNT+IDG+  +G++ 
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 238

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EMV++GI P   TY+ ++H L   R M +A+  L++M  KG++PD+ TYN LI
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI 298

Query: 123 NGY-----------------------------------CRCGNAKKAFSLHDEMIHKGIQ 147
            GY                                   C+ G  K+A  + D M  KG  
Sbjct: 299 YGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P + +YT ++   + +  +++   LF+  L  G+ PDI  FN LI  +   G +++A  +
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 418

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
             EM    V P  VTY T++   CR GK+++A    +QM  +G+ PD       +  Y+ 
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPD-------KYAYHC 471

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LIQG C +     A+EL+ E+++ G+  D   + S+I  +  + +  ++ N
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD ++Y   ++G   +G L + + + + M  +G+ P   T+N LI  Y N G 
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGM 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM   G+ P   TY  +I  L    KM +A +   +M ++G+VPD   Y+ 
Sbjct: 412 LDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  E+++ G++  ++ + S+I  L K  R+++A  +F+  +  G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++N L+DG+C  G +E+A  +   M    + P+ V Y TL++G C+ G+++E  
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M ++GIKP  I        YN +I GL +      A+    EM   GI  +  TY
Sbjct: 592 SLFREMLQKGIKPSTI-------LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 644

Query: 301 FSLIEGI 307
             ++ G+
Sbjct: 645 SIVLRGL 651



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 158/340 (46%), Gaps = 31/340 (9%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R + P SYTY   +    +  R E A     Q+   GL   A+  + L+ G+C     + 
Sbjct: 107 RVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDE 166

Query: 64  AFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNI 120
           A         + G +P   +YN+L+  L  + K  +ADD+L+ M E G V  PD + YN 
Sbjct: 167 ALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNT 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G+  KA  L  EM+ +GI P ++TY+S++  L K   M +A+      + KG
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD   +N LI G+ + G  + A  + KEM R  + PD V  NTLM   C+ GK++EAR
Sbjct: 287 VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEAR 346

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            + D M  +G  PD  S+                             P   T+N LI+  
Sbjct: 347 DVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAY 406

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
                 D A  +  EM   G+ P   TY ++I  +  + K
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGK 446



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 42/331 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P   TY + ++ +C+ G++++A     QM + G+VP    Y+ LI G+C  G+
Sbjct: 422 MRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGS 481

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     E++  G+      +  +I+ L    ++++A ++       G+ PD++ YN+
Sbjct: 482 LLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNM 541

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  +KA  + D M+  GI+P ++ Y +L+    K  R+ E   LF   L KG
Sbjct: 542 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKG 601

Query: 181 MLPDIVMFNALIDG-------------------------HCT----------NGNIERAF 205
           + P  +++N +IDG                          CT          N   + A 
Sbjct: 602 IKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAI 661

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L KE+  M V  D +T NT++ G  +  +VEEA+ L   + R G+        P  +TY
Sbjct: 662 FLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLV-------PCAVTY 714

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + +I  L K    + AE++   M + G  PD
Sbjct: 715 SIMITNLLKEGLVEEAEDMFSSMQNAGCEPD 745



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 114/243 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   YG+ V+G CK GR++E   +  +M + G+ P+ + YN +IDG    G 
Sbjct: 562 MVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 621

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM + GI     TY++++  L   R   EA  + KE+    +  D IT N 
Sbjct: 622 TVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 681

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  +    ++A  L   +   G+ P  +TY+ +I  L K+  + EA+ +F +    G
Sbjct: 682 MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAG 741

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD  + N ++        I RA + L ++D      + +T   L+     +G   E  
Sbjct: 742 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQI 801

Query: 241 RLL 243
           R L
Sbjct: 802 RFL 804



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 21/232 (9%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCR------CGNAKK-AFSLHDEMIHKG----- 145
           EA D+L E+  +G        N  +    R      CG+    A +L +    +      
Sbjct: 49  EAHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRV 108

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + PT  TY  L+   ++ +R   A   F   L  G+  D ++ + L+ G C     + A 
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 206 S-LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             LL     +   PD  +YN L+   C QGK  +A  LL  M   G        +P  + 
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGT-----VCSPDVVA 223

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           YN +I G  K  + + A +L +EMV +GI PD  TY S++  +    ++DKA
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKA 275


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 178/349 (51%), Gaps = 47/349 (13%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+  ++ T  + + G+C+ G +EE   + ++M E GLV   ++YNTLI G C  G +E 
Sbjct: 481 KGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEE 540

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF  +++M+KQG  P   TYN L+  L  + KM +   +L E  + G+VP+  TY +++ 
Sbjct: 541 AFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLE 600

Query: 124 GYC-----------------------------------RCGNAKKAFSLHDEMIHKGIQP 148
           GYC                                   + GN  +AF L D M    I P
Sbjct: 601 GYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHP 660

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T+ TY+S+I  +   + + EA  +FE    +G++P++  + ALI G+C  G +++  S+L
Sbjct: 661 TIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESIL 720

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           +EM    + P+++TY  ++ G C+ G  +EA +LL++M   GI PD +       TY  L
Sbjct: 721 QEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTV-------TYTVL 773

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            +G CK  E    EE L+      +  ++ TY +L++ +     AA S+
Sbjct: 774 QKGYCKENE---LEETLQG--DTAVPLEEITYTTLVDKLHPHSDAALSN 817



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 171/344 (49%), Gaps = 43/344 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  D YTY + ++  CK G+++EA  +  +M E G++P  VTYN LIDG C  G LE A
Sbjct: 236 GVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEA 295

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F+  MV+  + P+  TY +L++ L+   K  EA+ +L EM  KG  P+   +N LI+G
Sbjct: 296 LMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDG 355

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA------ 178
           Y R GN   A  + D+M  KG++P  +T+ +L+    + N+M +A+Q+ E  L+      
Sbjct: 356 YSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVN 415

Query: 179 ------------------------KGMLPDIVMFN-----ALIDGHCTNGNIERAFSLLK 209
                                   K +L   +  N      L+ G C  G    A  L  
Sbjct: 416 EDACSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWF 475

Query: 210 EM-DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            + D+  +  +  T N L++G C +G +EE   +  +M  RG+  D IS       YN L
Sbjct: 476 RLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGIS-------YNTL 528

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           I G CK+ + + A +L  +M+ +G  PD  TY  L++G+A   K
Sbjct: 529 IFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGK 572



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 164/348 (47%), Gaps = 43/348 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTY------------ 48
           M   GV P+  TY + + G+CK GRLEEA     +M EN + P+ VTY            
Sbjct: 267 MGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEK 326

Query: 49  -----------------------NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                  N LIDGY  KGN++ A   RD+M  +G+ P A T+N 
Sbjct: 327 FDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNT 386

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+       +M +A+ +L+ +    +  +    + +++  C+      A  +   ++ + 
Sbjct: 387 LLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKALLLRN 446

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           I+      T L+  L K  + +EA D  F     KG+  +    NAL+ G C  GN+E  
Sbjct: 447 IKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEV 506

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           F + KEM    +  D ++YNTL+ G C+ GK+EEA +L ++M ++G KPD         T
Sbjct: 507 FPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPD-------TYT 559

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           YN L++GL    + D    +L E    G+ P+  TY  ++EG  + D+
Sbjct: 560 YNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADR 607



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 151/315 (47%), Gaps = 8/315 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGNLE 62
           R ++ +       V G+CK G+  EA  +  ++ +  GL     T N L+ G C +GN+E
Sbjct: 445 RNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNME 504

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
             F    EMV++G++    +YN LI       K+ EA  + ++M ++G  PD+ TYN L+
Sbjct: 505 EVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLM 564

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G    G       +  E    G+ P + TY  ++      +R+  A  LF   +   + 
Sbjct: 565 KGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVE 624

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
              V++N LI  H   GN   AF L   M    +HP   TY++++HG C    VEEA+ +
Sbjct: 625 LSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGI 684

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++M+  G+ P+          Y ALI G CK  + D  E +L+EM S  I P+  TY  
Sbjct: 685 FEEMRNEGLMPN-------VFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTI 737

Query: 303 LIEGIASVDKAAESS 317
           +I+G   +    E++
Sbjct: 738 MIDGYCKMGNTKEAT 752



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 145/277 (52%), Gaps = 7/277 (2%)

Query: 40  GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99
           G+ P+  + N L+        L  +F   D M + G++    TY   I+      K+ EA
Sbjct: 201 GVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEA 260

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159
             +  +MGE G++P+ +TYN LI+G C+ G  ++A      M+   + P+++TY  L+  
Sbjct: 261 VGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNG 320

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L K  +  EA+ +     +KG  P+  +FNALIDG+   GN++ A  +  +M    + P+
Sbjct: 321 LVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPN 380

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            VT+NTL+ G CR  ++E+A ++L+ +       + +S N    +Y  ++  LCK+ + D
Sbjct: 381 AVTHNTLLQGFCRTNQMEQAEQVLEYL-----LSNVLSVNEDACSY--VLHLLCKSSKFD 433

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A ++++ ++ + I  +D+    L+ G+    K  E+
Sbjct: 434 SALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEA 470



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 154/345 (44%), Gaps = 33/345 (9%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+GV P   +    +S + K   L ++ R+ + M   G++    TY T I+ YC  G ++
Sbjct: 199 SKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKID 258

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     +M + G++P   TYN LI  L    ++ EA      M E  + P  +TY IL+
Sbjct: 259 EAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILV 318

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           NG  +     +A S+  EM  KG  P    + +LI   S++  M +A ++ ++   KG+ 
Sbjct: 319 NGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLK 378

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           P+ V  N L+ G C    +E+A  +L+ +  + + V+ D  +Y  ++H  C+  K + A 
Sbjct: 379 PNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSY--VLHLLCKSSKFDSAL 436

Query: 241 RLLDQMKRRGIK-----------------------------PDHISFNPTRLTYNALIQG 271
           +++  +  R IK                              D         T NAL+ G
Sbjct: 437 KIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYG 496

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LC+    +    + +EMV +G+  D  +Y +LI G     K  E+
Sbjct: 497 LCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEA 541



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 31/184 (16%)

Query: 156 LIFVLSKQNRMIEADQLFENFL---AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           LI++L  Q + +     F+ F+   +KG+ P +   N L+     +  + ++F +   M 
Sbjct: 174 LIYILCSQFQHLGFHWAFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMC 233

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF-------------- 258
           R  V  D  TY T ++  C+ GK++EA  L  +M   G+ P+ +++              
Sbjct: 234 RGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLE 293

Query: 259 --------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
                         NP+ +TY  L+ GL K ++ D A  +L EM SKG +P++  + +LI
Sbjct: 294 EALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALI 353

Query: 305 EGIA 308
           +G +
Sbjct: 354 DGYS 357


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 169/377 (44%), Gaps = 77/377 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY S V  +CK   +++A   L QM   G++P   TYN LI GY + G 
Sbjct: 245 MVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQ 304

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM +Q I+P   T+N+L+  L    K+ EA D+   M  KG  PD  +YNI
Sbjct: 305 WKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 364

Query: 121 LINGYC-----------------------------------RCGNAKKAFSLHDEMIHKG 145
           ++NGY                                     CG   KA  + +EM   G
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P +LTYT++I  L +  +M +A + F   + +G+ PD   ++ LI G CT+G++ +A 
Sbjct: 425 VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 206 SLLKE--------------------------MDRMKV---------HPDEVTYNTLMHGR 230
            L+ E                          MD   +         HP  V Y+ LM G 
Sbjct: 485 ELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C  GK+E+A R+ D M   GI+P+ +        Y  L+ G CK    D    L REM+ 
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIEPNDV-------VYGTLVNGYCKIGRIDEGLSLFREMLQ 597

Query: 291 KGITPDDNTYFSLIEGI 307
           KGI P    Y  +I+G+
Sbjct: 598 KGIKPSTILYNIIIDGL 614



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 163/307 (53%), Gaps = 9/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
           G  PD ++Y   +  +C +G+  +A  +L  M E G V  P  V YNT+IDG+  +G++ 
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVN 236

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EMV++GI P   TY+ ++H L   R M +A+  L++M  KG++P++ TYN LI
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI 296

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            GY   G  K+A  +  EM  + I P ++T+  L+  L K  ++ EA  +F+    KG  
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +N +++G+ T G +     L   M    + P   T+N L+      G +++A  +
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 416

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++M+  G+KP+        LTY  +I  LC+  + D A E   +M+ +G+ PD   Y  
Sbjct: 417 FNEMRDHGVKPN-------VLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 303 LIEGIAS 309
           LI+G  +
Sbjct: 470 LIQGFCT 476



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 165/312 (52%), Gaps = 7/312 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD   Y + + G  KEG + +A  + ++M + G+ P  VTY++++   C    ++ A +
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F  +MV +G++P   TYN LI+      +  EA  + KEM  + I+PD +T+N+L+   C
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLC 335

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G  K+A  + D M  KG  P + +Y  ++   + +  +++   LF+  L  G+ P I 
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVIC 395

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN LI  +   G +++A  +  EM    V P+ +TY T++   CR GK+++A    +QM
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQM 455

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G+ PD       +  Y+ LIQG C +     A+EL+ E+++ G+  D   + S+I  
Sbjct: 456 IDQGVAPD-------KYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINN 508

Query: 307 IASVDKAAESSN 318
           +  + +  ++ N
Sbjct: 509 LCKLGRVMDAQN 520



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD ++Y   ++G   +G L + + + + M  +G+ P   T+N LI  Y N G 
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 409

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM   G+ P   TY  +I  L    KM +A +   +M ++G+ PD   Y+ 
Sbjct: 410 LDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  E+++ G+   ++ ++S+I  L K  R+++A  +F+  +  G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V+++ L+DG+C  G +E+A  +   M    + P++V Y TL++G C+ G+++E  
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M ++GIKP  I        YN +I GL +      A+    EM   GI  +  TY
Sbjct: 590 SLFREMLQKGIKPSTI-------LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 642

Query: 301 FSLIEGI 307
             ++ G+
Sbjct: 643 SIVLRGL 649



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD Y Y   + G C  G L +A  ++ ++  NG+    V ++++I+  C  G 
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGR 514

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D  V  G+ PTA  Y++L+    +  KM +A  +   M   GI P+ + Y  
Sbjct: 515 VMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ G   +  SL  EM+ KGI+P+ + Y  +I  L +  R + A   F      G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   ++ ++ G   N   + A  L KE+  M V  D +T NT++ G  +  +VEEA+
Sbjct: 635 IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAK 694

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L   + R G+        P  +TY+ +I  L K    + AE++   M + G  PD
Sbjct: 695 DLFASISRSGLV-------PCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 144/338 (42%), Gaps = 66/338 (19%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           L PT+ TY  L+D        E+A +F  ++++ G+       N L+      ++  EA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 100 DDMLKEMGEKGIVPDSITYNIL-------------------------------------I 122
           D +L    E G VPD  +Y+IL                                     I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVI 226

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + G+  KA  L  EM+ +GI P  +TY+S++  L K   M +A+      + KG+L
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+   +N LI G+ + G  + A  + KEM R  + PD VT+N LM   C+ GK++EAR +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDV 346

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D M  +G  PD  S+N                            P   T+N LI+    
Sbjct: 347 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYAN 406

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               D A  +  EM   G+ P+  TY ++I  +  + K
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGK 444



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 122/253 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P +  Y   + G C  G++E+A R+ + M   G+ P  V Y TL++GYC  G ++  
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEG 588

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM+++GI P+   YN++I  L    + V A     EM E GI  +  TY+I++ G
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRG 648

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +     +A  L  E+    ++  ++T  ++I  + +  R+ EA  LF +    G++P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ +I      G +E A  +   M      PD    N ++    ++ ++  A   L 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 245 QMKRRGIKPDHIS 257
           ++  R    +H++
Sbjct: 769 KIDERNFSLEHLT 781



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 16/267 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   YG+ V+G CK GR++E   +  +M + G+ P+ + YN +IDG    G 
Sbjct: 560 MVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 619

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM + GI     TY++++  L   R   EA  + KE+    +  D IT N 
Sbjct: 620 TVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 679

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  +    ++A  L   +   G+ P ++TY+ +I  L K+  + EA+ +F +    G
Sbjct: 680 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD  + N ++        I RA + L ++D      + +T  T++             
Sbjct: 740 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLT--TML------------- 784

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNA 267
            L+D    +G   +HI F P +  + A
Sbjct: 785 -LVDLFSSKGTCREHIRFLPAKYHFLA 810



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 23/233 (9%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILI--------NGYCRCGNAKKAFSLHDEMIHKG---- 145
           EA D+L E+  +G        N  +        +  CR G A  A +L +    +     
Sbjct: 47  EAHDLLDELQRRGTPVLERDLNGFLAAIARAPSSAACRSGPAL-AVALFNRAASRAQGPR 105

Query: 146 -IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + PT  TY  L+   ++ +R   A   F   L  G+  DI++ N L+ G C     + A
Sbjct: 106 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEA 165

Query: 205 FS-LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              LL     +   PD  +Y+ L+   C QGK  +A  LL  M   G        +P  +
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-----VCSPDVV 220

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
            YN +I G  K  + + A +L +EMV +GI PD  TY S++  +    ++DKA
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKA 273


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G+ P+  +Y + + G C++  +  A ++ ++M +NG  P AVT+  L+DGY  KG++E
Sbjct: 277 AKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIE 336

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AFS    M    I+PT +T  ++I  L    +  E  D+  +   +G VP  + YN +I
Sbjct: 337 NAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTII 396

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + GN   A +++ EM   GI P+ +TYTSLI    K N +  A +L  +   KG+ 
Sbjct: 397 DGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLK 456

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            DI  +  LIDG C   +++ A  LL E+    + P+   YN+++ G      VEEA  L
Sbjct: 457 MDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDL 516

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M   GI  D         TY +LI GL K+     A ++  EM+SKGI PDD  +  
Sbjct: 517 YKKMVNEGIPCD-------LKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTV 569

Query: 303 LIEGIAS 309
           LI G+ +
Sbjct: 570 LINGLCN 576



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 167/316 (52%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G++   Y+  S + G  K    + A  M     E+GL     T+NTL+   C +G 
Sbjct: 206 MKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLA-NVFTFNTLLSWLCKEGK 264

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  DE++ +GI P   +YN +I     +  +  A  + KEM + G  P+++T+ I
Sbjct: 265 MNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTI 324

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY + G+ + AFS+   M    I PT  T   +I  L K  R  E   LF  F+++G
Sbjct: 325 LMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQG 384

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N +IDG    GNI  A ++ +EM  + + P  VTY +L+ G C+   ++ A 
Sbjct: 385 FVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLAL 444

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL+ MKR+G+K D  +       Y  LI G CK ++   A ELL E+   G++P+   Y
Sbjct: 445 KLLNDMKRKGLKMDIKA-------YGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIY 497

Query: 301 FSLIEGIASVDKAAES 316
            S+I G  +++   E+
Sbjct: 498 NSMITGFKNMNNVEEA 513



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 155/282 (54%), Gaps = 8/282 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+G  P    Y + + G  KEG +  AS +  +M E G+ P+ VTY +LIDG+C   N++
Sbjct: 382 SQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 441

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           +A    ++M ++G+      Y  LI      R M  A ++L E+   G+ P+   YN +I
Sbjct: 442 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMI 501

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+    N ++A  L+ +M+++GI   + TYTSLI  L K  R++ A  +    L+KG+L
Sbjct: 502 TGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGIL 561

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD      LI+G C  G  E A  +L++M+   + P  + YNTL+ G  ++G ++EA RL
Sbjct: 562 PDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL 621

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            D+M  RG+ PD+I       TY+ L+ G  K  +G+ + +L
Sbjct: 622 HDEMLDRGLVPDNI-------TYDILVNGKFKG-DGNFSRDL 655



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 155/297 (52%), Gaps = 7/297 (2%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           +T+ + +S +CKEG++ EA  + +++   G+ P  V+YN +I G+C K N+  A     E
Sbjct: 250 FTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKE 309

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M+  G  P A T+ +L+     +  +  A  +   M +  I+P   T  I+I G C+ G 
Sbjct: 310 MLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGR 369

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
           + +   L ++ + +G  PT + Y ++I    K+  +  A  ++      G+ P  V + +
Sbjct: 370 SFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTS 429

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LIDG C   NI+ A  LL +M R  +  D   Y TL+ G C++  ++ A  LL++++  G
Sbjct: 430 LIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG 489

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + P+       R  YN++I G       + A +L ++MV++GI  D  TY SLI+G+
Sbjct: 490 LSPN-------RFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGL 539



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 162/336 (48%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  P   T+ S ++   KEG + EA R+ + M   G         +L+ GYC +GN
Sbjct: 101 MRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGN 160

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +E+ + G++P   TY++LI        + +A +   EM  KGI     + N 
Sbjct: 161 LRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNS 220

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ GY +C + + AF++ ++ +  G+   + T+ +L+  L K+ +M EA  L++  +AKG
Sbjct: 221 ILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKG 279

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N +I GHC   NI  A  + KEM      P+ VT+  LM G  ++G +E A 
Sbjct: 280 ISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAF 339

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            +  +MK   I P   +                            F PT + YN +I G 
Sbjct: 340 SIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGF 399

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            K    +LA  + REM   GITP   TY SLI+G  
Sbjct: 400 IKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFC 435



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 142/302 (47%), Gaps = 8/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  D +T    +    KEG + EA +   Q K  G+      Y+  +   C K N   A
Sbjct: 35  GVTGDCFTLHVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYA 94

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM   G +P   T+  +I   + E  + EA  +  +M   G   +      L+ G
Sbjct: 95  LSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKG 154

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  GN + A  L +E+   G+ P  +TY+ LI    K   + +A + +     KG+   
Sbjct: 155 YCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSS 214

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +   N++++G+    + + AF++  +     +  +  T+NTL+   C++GK+ EA  L D
Sbjct: 215 VYSLNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWD 273

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++  +GI P+ +S       YN +I G C+    + A ++ +EM+  G TP+  T+  L+
Sbjct: 274 EVIAKGISPNVVS-------YNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILM 326

Query: 305 EG 306
           +G
Sbjct: 327 DG 328



 Score = 45.1 bits (105), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M P I   N L+           A  L  +M  + V  D  T + ++    ++G + EA 
Sbjct: 1   MTPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAE 60

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +   Q K RG++ D  +       Y+  +  LC       A  LLREM + G  P + T+
Sbjct: 61  QHFLQAKARGVELDQEA-------YSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTF 113

Query: 301 FSLIEGIASVDKAAES 316
            S+I         AE+
Sbjct: 114 TSVITACVKEGNVAEA 129


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G+ P+  +Y + + G C++  +  A ++ ++M +NG  P AVT+  L+DGY  KG++E
Sbjct: 395 AKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIE 454

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AFS    M    I+PT +T  ++I  L    +  E  D+  +   +G VP  + YN +I
Sbjct: 455 NAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTII 514

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + GN   A +++ EM   GI P+ +TYTSLI    K N +  A +L  +   KG+ 
Sbjct: 515 DGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLK 574

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            DI  +  LIDG C   +++ A  LL E+    + P+   YN+++ G      VEEA  L
Sbjct: 575 MDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDL 634

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
             +M   GI  D         TY +LI GL K+     A ++  EM+SKGI PDD  +  
Sbjct: 635 YKKMVNEGIPCD-------LKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTV 687

Query: 303 LIEGIAS 309
           LI G+ +
Sbjct: 688 LINGLCN 694



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 167/316 (52%), Gaps = 8/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++G++   Y+  S + G  K    + A  M     E+GL     T+NTL+   C +G 
Sbjct: 324 MKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLA-NVFTFNTLLSWLCKEGK 382

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  DE++ +GI P   +YN +I     +  +  A  + KEM + G  P+++T+ I
Sbjct: 383 MNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTI 442

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY + G+ + AFS+   M    I PT  T   +I  L K  R  E   LF  F+++G
Sbjct: 443 LMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQG 502

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N +IDG    GNI  A ++ +EM  + + P  VTY +L+ G C+   ++ A 
Sbjct: 503 FVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLAL 562

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL+ MKR+G+K D  +       Y  LI G CK ++   A ELL E+   G++P+   Y
Sbjct: 563 KLLNDMKRKGLKMDIKA-------YGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIY 615

Query: 301 FSLIEGIASVDKAAES 316
            S+I G  +++   E+
Sbjct: 616 NSMITGFKNMNNVEEA 631



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 155/282 (54%), Gaps = 8/282 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+G  P    Y + + G  KEG +  AS +  +M E G+ P+ VTY +LIDG+C   N++
Sbjct: 500 SQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 559

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           +A    ++M ++G+      Y  LI      R M  A ++L E+   G+ P+   YN +I
Sbjct: 560 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMI 619

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            G+    N ++A  L+ +M+++GI   + TYTSLI  L K  R++ A  +    L+KG+L
Sbjct: 620 TGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGIL 679

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD      LI+G C  G  E A  +L++M+   + P  + YNTL+ G  ++G ++EA RL
Sbjct: 680 PDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL 739

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            D+M  RG+ PD+I       TY+ L+ G  K  +G+ + +L
Sbjct: 740 HDEMLDRGLVPDNI-------TYDILVNGKFKG-DGNFSRDL 773



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 155/297 (52%), Gaps = 7/297 (2%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           +T+ + +S +CKEG++ EA  + +++   G+ P  V+YN +I G+C K N+  A     E
Sbjct: 368 FTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKE 427

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M+  G  P A T+ +L+     +  +  A  +   M +  I+P   T  I+I G C+ G 
Sbjct: 428 MLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGR 487

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
           + +   L ++ + +G  PT + Y ++I    K+  +  A  ++      G+ P  V + +
Sbjct: 488 SFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTS 547

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LIDG C   NI+ A  LL +M R  +  D   Y TL+ G C++  ++ A  LL++++  G
Sbjct: 548 LIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG 607

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + P+       R  YN++I G       + A +L ++MV++GI  D  TY SLI+G+
Sbjct: 608 LSPN-------RFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGL 657



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 162/336 (48%), Gaps = 29/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G  P   T+ S ++   KEG + EA R+ + M   G         +L+ GYC +GN
Sbjct: 219 MRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGN 278

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +E+ + G++P   TY++LI        + +A +   EM  KGI     + N 
Sbjct: 279 LRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNS 338

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ GY +C + + AF++ ++ +  G+   + T+ +L+  L K+ +M EA  L++  +AKG
Sbjct: 339 ILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKG 397

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N +I GHC   NI  A  + KEM      P+ VT+  LM G  ++G +E A 
Sbjct: 398 ISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAF 457

Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
            +  +MK   I P   +                            F PT + YN +I G 
Sbjct: 458 SIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGF 517

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            K    +LA  + REM   GITP   TY SLI+G  
Sbjct: 518 IKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFC 553



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 143/332 (43%), Gaps = 58/332 (17%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D +  G  V   C   RL E +++               YN  +D    +GN+  A    
Sbjct: 139 DQFASGKSVRFSCLMDRLVECTKL---------------YNFPLD--IQEGNILEAEQHF 181

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            +   +G+      Y++ +H L ++     A  +L+EM   G +P   T+  +I    + 
Sbjct: 182 LQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKE 241

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           GN  +A  L D+M++ G    +   TSL+     Q  +  A  L       G++P+ V +
Sbjct: 242 GNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTY 301

Query: 189 NALIDGHCTNGNIERAFSLLKEMD----RMKVH--------------------------- 217
           + LIDG C NGNIE+AF    EM     R  V+                           
Sbjct: 302 SVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALE 361

Query: 218 ---PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
               +  T+NTL+   C++GK+ EA  L D++  +GI P+ +S       YN +I G C+
Sbjct: 362 SGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVS-------YNNIILGHCR 414

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               + A ++ +EM+  G TP+  T+  L++G
Sbjct: 415 KDNINAACKVYKEMLDNGFTPNAVTFTILMDG 446


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 123 GYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 182

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E K+  A+++  EM +KG+VP+ +T+  LI+G
Sbjct: 183 FRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDG 242

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + +   ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 243 HCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPD 302

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y TL+ G C++G+  +A ++L 
Sbjct: 303 KITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLR 362

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P
Sbjct: 363 EMLSVGLKPD-------TGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 406



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G ++ D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 48  LETKGTLRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKVLEHLMKLK 107

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 108 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFN 167

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G++P + TY+ LI  L K++++  A++LF+  L K
Sbjct: 168 TLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDK 227

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    +  D +TYNTL++G C++G +++A
Sbjct: 228 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQA 287

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M+ +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 288 QNLIDEMRMKGLKPD-------KITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVV 340

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 341 YTTLISGLCQEGRSVDA 357



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 130/222 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV+PD YTY   ++G+CKE +++ A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 189 MHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q +     TYN LI+ L  +  + +A +++ EM  KG+ PD ITY  
Sbjct: 249 VDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTT 308

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 309 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVG 368

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PD   +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 369 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 7/187 (3%)

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           K  +  + E++  G   ++  +  L+    K+  +  A  +F+     G+ P +V FN L
Sbjct: 110 KLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTL 169

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           ++G+   G+++  F L   M    V PD  TY+ L++G C++ K++ A  L D+M  +G+
Sbjct: 170 MNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGL 229

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            P+ ++F         LI G CKN   DLA E+ ++M+S+ ++ D  TY +LI G+    
Sbjct: 230 VPNGVTFT-------TLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKG 282

Query: 312 KAAESSN 318
              ++ N
Sbjct: 283 DLKQAQN 289


>gi|255660954|gb|ACU25646.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 375

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKYAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTK 368



 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 154/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C++    EA  L+ ++  +G+       +P
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGL-------DP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 GVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYN 220


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 158/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+         TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-------IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 173/333 (51%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +I+      
Sbjct: 56  LETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  +  +M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQG 271
           + L D+M  +G+KPD I++                                + Y ALI G
Sbjct: 296 QDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ P+  TY  +I
Sbjct: 356 LCQEGRSVDAEKMLREMLSVGLKPEIGTYTMII 388



 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D+  EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|255660980|gb|ACU25659.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 376

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 160/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G C  G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKXSGFVEDSITYGILVHGFCXNGYIDKSLHVLEMAEQKGGVLXAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  + +EM      P  ITYN 
Sbjct: 145 LBRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMXTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+      A++L  E++ KG+ P ++TY+ L+  L   +++ +A QL+    +KG
Sbjct: 205 LINGLCKNEMFGXAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 149/292 (51%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRXXKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M   G V DSITY IL++G+C  G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVXEVIXIWELMKXSGFVEDSITYGILVHGFCXNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P+  ++N LI+G      
Sbjct: 120 AEQKGGVLXAFAYSAMINGLCKEANLBRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+      A  L+ ++  +G+       NP
Sbjct: 180 FEDAIRVFREMXTMHCSPTIITYNTLINGLCKNEMFGXAYNLVKELLDKGL-------NP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             +TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 233 GVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 114/222 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMXTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+ +A  +  ++  KG  PD   +NI
Sbjct: 215 FGXAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QPD++TY   + G+CK GR+  A R+L +M++ G  P  VTY  ++  +C  G 
Sbjct: 337 MGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 396

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   +  +EM  +G+   +  YN +I+ L  + +M EA  +++EM  +G  PD  +YN 
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 456

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C     ++A  + + ++ +G+    +TY ++I  L +  R  +A +L +  +  G
Sbjct: 457 IIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG 516

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+V +N LI   C +GN++R+  LL+EM    + P+ V+YN L+   C++ +V +A 
Sbjct: 517 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 576

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  QM  +G+ PD +       TYN LI GLCK      A  LL ++ ++ + PD  TY
Sbjct: 577 ELSKQMLNQGLAPDIV-------TYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITY 629

Query: 301 FSLI 304
             LI
Sbjct: 630 NILI 633



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 165/339 (48%), Gaps = 38/339 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK-------------------------------EGRLEEA 29
           M ++G  P   TYG  + G+C+                               EG+L EA
Sbjct: 271 MMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEA 330

Query: 30  SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89
           + + E M   G  P A TY+ L+ G C  G +  A     EM K+G  P   TY +++H 
Sbjct: 331 TELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHS 390

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
                   +   +L+EM  KG+  +S  YN +I   C+ G   +A  L  EM  +G  P 
Sbjct: 391 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 450

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + +Y ++I+ L    +M EA+ +FEN L +G++ + + +N +I     +G  + A  L K
Sbjct: 451 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAK 510

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM       D V+YN L+   C+ G V+ +  LL++M  +GIKP+++S       YN LI
Sbjct: 511 EMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVS-------YNILI 563

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             LCK +    A EL ++M+++G+ PD  TY +LI G+ 
Sbjct: 564 SELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLC 602



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 144/245 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+  +S  Y   +  +CK+GR++EA  ++++M+  G  P   +YNT+I   CN   
Sbjct: 407 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + ++++G++    TYN +IH LL + +  +A  + KEM   G   D ++YN 
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 526

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ GN  ++  L +EM  KGI+P  ++Y  LI  L K+ R+ +A +L +  L +G
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N LI+G C  G +  A +LL+++    VHPD +TYN L+   C+   +++A 
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA 646

Query: 241 RLLDQ 245
            LL++
Sbjct: 647 MLLNR 651



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 164/313 (52%), Gaps = 11/313 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P ++T+G     +C+ GR  EA  +L  M  +G VP AV Y T+I   C++G +  A 
Sbjct: 171 VPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAA 230

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +  +EM+  G     +T++ ++  +    ++ EA  ++  M  KG +P  +TY  L+ G 
Sbjct: 231 TLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGL 290

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR   A +A +    M+ +  +  ++ + ++I     + ++ EA +L+E    KG  PD 
Sbjct: 291 CRVRQADEARA----MLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDA 346

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             ++ L+ G C  G I  A  LL+EM++    P+ VTY  ++H  C+ G  ++ R LL++
Sbjct: 347 HTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 406

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G     ++ N     YN +I  LCK+   D A  L++EM S+G  PD  +Y ++I 
Sbjct: 407 MSAKG-----LTLNSQ--GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIY 459

Query: 306 GIASVDKAAESSN 318
            + + ++  E+ +
Sbjct: 460 HLCNNEQMEEAEH 472



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 162/363 (44%), Gaps = 59/363 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+  Y + +  +C +G + EA+ +L +M   G      T++ ++ G C  G 
Sbjct: 201 MARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGR 260

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           +  A    D M+ +G MP   TY  L+  L                              
Sbjct: 261 VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGG 320

Query: 91  -LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
            L E K+ EA ++ + MG KG  PD+ TY+IL++G C+ G    A  L  EM  KG  P 
Sbjct: 321 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPN 380

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           ++TYT ++    K     +   L E   AKG+  +   +N +I   C +G ++ A  L++
Sbjct: 381 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 440

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------- 259
           EM     +PD  +YNT+++  C   ++EEA  + + +   G+  + I++N          
Sbjct: 441 EMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 500

Query: 260 ----PTRL--------------TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
                 RL              +YN LI+ +CK+   D +  LL EM  KGI P++ +Y 
Sbjct: 501 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 560

Query: 302 SLI 304
            LI
Sbjct: 561 ILI 563



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 138/313 (44%), Gaps = 40/313 (12%)

Query: 29  ASRMLEQM-KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV-KQGIMPTASTYNLL 86
           A  +L+Q+ +  G+ P+  +YN ++           A +    MV +  + PT  T+ + 
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
              L    +  EA  +L+ M   G VPD++ Y  +I+  C  G   +A +L +EM+  G 
Sbjct: 182 ARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP----------------------- 183
              + T+  ++  +    R+ EA +L +  + KG +P                       
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARA 301

Query: 184 --------DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
                   ++V+FN +I G    G +  A  L + M      PD  TY+ LMHG C+ G+
Sbjct: 302 MLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGR 361

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +  A RLL +M+++G       F P  +TY  ++   CKN   D    LL EM +KG+T 
Sbjct: 362 ISSAVRLLREMEKKG-------FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTL 414

Query: 296 DDNTYFSLIEGIA 308
           +   Y  +I  + 
Sbjct: 415 NSQGYNGMIYALC 427



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 100/174 (57%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  +  TY + +  + ++GR ++A R+ ++M  +G     V+YN LI   C  GN++ +
Sbjct: 481 GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRS 540

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM ++GI P   +YN+LI EL  ER++ +A ++ K+M  +G+ PD +TYN LING
Sbjct: 541 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 600

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            C+ G    A +L +++ ++ + P ++TY  LI    K   + +A  L    +A
Sbjct: 601 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMA 654


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 183/381 (48%), Gaps = 69/381 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY +F+SG+CK G+L++   MLE+M   G+ P  VT+ ++I G C    
Sbjct: 178 MIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANR 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG------------- 107
           ++ AF     M+++G +P + TY++++  L    ++   D++L+ M              
Sbjct: 238 IDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTH 297

Query: 108 ------------------------EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
                                   E G +P+ ++YN +I+G C+ GN   A+ L  +M+ 
Sbjct: 298 NAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLD 357

Query: 144 KGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM-LPDIVMFNALIDGHCTNGNI 201
            G  +P ++ + +LI    K  R+ +A QL     AK + +PD+V +N LIDG    G++
Sbjct: 358 SGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSL 417

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-- 259
           ++A  LL+EM  +   P+ VTY  L++G  + G  EEA  L D+M  +G  PD I++N  
Sbjct: 418 KQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTV 477

Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
                                       P  +TY  LI G C+ ++ +    LL+EM ++
Sbjct: 478 LSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTAR 537

Query: 292 GITPDDNTYFSLIEGIASVDK 312
           G + D  TY  LI  +A  ++
Sbjct: 538 GWSCDSYTYNVLIAKLAETEE 558



 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 171/356 (48%), Gaps = 43/356 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G      TY + + G+CK G L+ A  +L++M + G  P  VTY  LIDG C    
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M++ G  P   TYN LIH L M  +M +A  +L+E+   G  P+ ITY+ 
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF------VLSKQNRMIEADQLFE 174
           L+   CR     +A  L  EMI +G    ++ Y   IF        S +    + D++ E
Sbjct: 121 LVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIE 180

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           +    G +PD+V +N  I G C  G +++   +L+EMDR  + PD VT+ +++ G C+  
Sbjct: 181 S----GRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKAN 236

Query: 235 KVEEARRLLDQMKRRGIKPDHISFN--------PTRL----------------------T 264
           ++++A ++   M  RG  PD ++++          RL                      T
Sbjct: 237 RIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYT 296

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAESS 317
           +NA I  LC++ +  LA+ +L  M+  G  P+  +Y  +I+G+    +VD A + S
Sbjct: 297 HNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLS 352



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 163/327 (49%), Gaps = 24/327 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  TY S + G+C   R+++A  +L+++  NG  P  +TY+TL+   C +  
Sbjct: 71  MLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRR 130

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIH--------ELLMERKMVEADDMLKEMGEKGIV 112
           L+ A     EM+ +G     S  NL+++        E   +    E  D   EM E G +
Sbjct: 131 LDQARGLIREMILRG-----SVCNLVVYIDCIFGFCEARCQSSRYECRDG-DEMIESGRI 184

Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           PD +TYN  I+G C+ G   K   + +EM   GI P ++T+ S+I  L K NR+ +A Q+
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQV 244

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP--DEVTYNTLMHGR 230
           F+  L +G +PD + ++ ++D       ++    +L+ M  MK     +  T+N  +   
Sbjct: 245 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGAL 304

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           CR GK   A+ +L  M   G  P+        L+YN +I GLCK+   D A +L R+M+ 
Sbjct: 305 CRSGKFPLAKNILLGMIESGSLPN-------LLSYNFVIDGLCKSGNVDDAWKLSRKMLD 357

Query: 291 KGITPDDNTYF-SLIEGIASVDKAAES 316
            G    D  +F +LI G     + +++
Sbjct: 358 SGCCKPDVIFFNTLISGFCKAGRLSQA 384



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 155/321 (48%), Gaps = 33/321 (10%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   + YT+ +F+  +C+ G+   A  +L  M E+G +P  ++YN +IDG C  GN++ A
Sbjct: 289 GCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDA 348

Query: 65  FSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEKGI-VPDSITYNILI 122
           +    +M+  G   P    +N LI       ++ +A  +L EM  K I VPD +TYN LI
Sbjct: 349 WKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLI 408

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G  + G+ K+A  L  EM   G +P ++TY +LI   +K     EA+ LF+   AKG  
Sbjct: 409 DGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCF 468

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH--PDEVTYNTLMHGRCRQGKVEEAR 240
           PDI+ +N ++      G + +A  + +++     +  PD +TY  L+ G CR    E+  
Sbjct: 469 PDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGL 528

Query: 241 RLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQG 271
            LL +M  RG   D  ++N                             P+   +N+L++ 
Sbjct: 529 TLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRL 588

Query: 272 LCKNQEGDLAEELLREMVSKG 292
             +  + + A  +++EM  KG
Sbjct: 589 FLRTGDVNSARSMVQEMNEKG 609



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 38/153 (24%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M ++G  PD  TY + +S   K G + +A  + +Q+K       P A+TY  LIDGYC  
Sbjct: 462 MSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRA 521

Query: 59  GNLEMAFSFRDEMVKQG------------------------------------IMPTAST 82
            + E   +   EM  +G                                     +P+AS 
Sbjct: 522 EDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASI 581

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           +N L+   L    +  A  M++EM EKG + D+
Sbjct: 582 FNSLVRLFLRTGDVNSARSMVQEMNEKGHLVDA 614



 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRL-EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M +RG   DSYTY   ++ + +   +  +A  + +QM +   VP+A  +N+L+  +   G
Sbjct: 534 MTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTG 593

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89
           ++  A S   EM ++G +  AS    L  E
Sbjct: 594 DVNSARSMVQEMNEKGHLVDASNLEALNKE 623


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 172/336 (51%), Gaps = 28/336 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G++PD  TY     G    G +  A  ++++M   G  P  VTY  LI G+C  GN
Sbjct: 342 MENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGN 401

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A     EM+  G   +  +  +L+  L   R++  A  +  EM   G+ PD ITY+ 
Sbjct: 402 VEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYST 461

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  ++A  L+++M    I P  L + +++  L ++ ++ +A   F+  +   
Sbjct: 462 LIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSN 521

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI+++N +IDG+   GN   A  L K++    + P  VT+N+LM+G C   K+ +AR
Sbjct: 522 LSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQAR 581

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           RLLD +K  G++P+ +++                             PT +TY  +I+GL
Sbjct: 582 RLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGL 641

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CK  +   + +LL +M + G+TPD  +Y ++I+   
Sbjct: 642 CKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFC 677



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 167/339 (49%), Gaps = 42/339 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------- 45
           M++ G++PD  TY + + G+CK+G +++A  + E+M  N ++P +               
Sbjct: 447 MEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGK 506

Query: 46  --------------------VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                               + YN +IDGY  +GN   A     ++ ++GI PT  T+N 
Sbjct: 507 ISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNS 566

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L++   + RK+ +A  +L  +   G+ P+++TY  L+N YC  GN +    L  EM  K 
Sbjct: 567 LMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKA 626

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I PT +TYT +I  L KQ ++ E+ QL E+  A G+ PD V +N +I   C   ++ +AF
Sbjct: 627 IGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAF 686

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  +M    + P  VTYN L++G C  G +++A  LL  ++ R +       N  +  Y
Sbjct: 687 QLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKV-------NLNKYAY 739

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
             +I+  C   + D A    R+MV KG       Y ++I
Sbjct: 740 TTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVI 778



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 165/318 (51%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G Q    +    +  +CK  +++ A ++  +M+ NGL P  +TY+TLI G C +G 
Sbjct: 412 MISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGE 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    ++M    I+P +  +  ++  L  + K+ +A      +    +  D I YNI
Sbjct: 472 VQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNI 531

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GY + GN ++A  L+ ++  KGI PT++T+ SL++      ++ +A +L +     G
Sbjct: 532 MIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHG 591

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V +  L++ +C  GN++    LL EM    + P  +TY  ++ G C+Q K++E+ 
Sbjct: 592 LEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESC 651

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL+ M   G+ PD +S       YN +IQ  CK ++   A +L  +M+   + P   TY
Sbjct: 652 QLLEDMDAVGLTPDQVS-------YNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTY 704

Query: 301 FSLIEGIASVDKAAESSN 318
             LI G        ++ N
Sbjct: 705 NILINGFCVYGDLKDADN 722



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 164/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K  G     YT    V G+C++ R ++A    +  +     P+ V++NT++  YC  G 
Sbjct: 237 IKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGF 296

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A SF   M+K G++P A +YN+LIH L +   M EA D+  +M   G+ PD +TYNI
Sbjct: 297 VDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNI 356

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L  G+   G    A+++  +M+ KG  P ++TYT LI    +   + EA +L++  ++ G
Sbjct: 357 LAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHG 416

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
               I+    L+   C +  ++ AF L  EM+   + PD +TY+TL+HG C+QG+V++A 
Sbjct: 417 FQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAI 476

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++M    I P+        L + A++ GLC+  +   A      +++  ++ D   Y
Sbjct: 477 LLYEKMCSNRIIPN-------SLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILY 529

Query: 301 FSLIEG 306
             +I+G
Sbjct: 530 NIMIDG 535



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 115/211 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK++ + P   TY   + G+CK+ +L+E+ ++LE M   GL P  V+YNT+I  +C   +
Sbjct: 622 MKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARD 681

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF   D+M+   + PT+ TYN+LI+   +   + +AD++L  +  + +  +   Y  
Sbjct: 682 MRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTT 741

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C  G+  KA     +M+ KG + ++  Y+++I  L K+  + EA   F   L+ G
Sbjct: 742 IIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDG 801

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           + PD  +F  L++     G++   F LL EM
Sbjct: 802 VCPDQDLFEVLLNAFHQCGHLNSEFELLAEM 832



 Score =  114 bits (285), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 137/324 (42%), Gaps = 77/324 (23%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+ P   T+ S + G C   +L +A R+L+ +K +GL P AVTY TL++ YC +GN++ 
Sbjct: 555 KGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQS 614

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD--------- 114
                 EM  + I PT  TY ++I  L  + K+ E+  +L++M   G+ PD         
Sbjct: 615 LLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQ 674

Query: 115 --------------------------SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                                     S+TYNILING+C  G+ K A +L           
Sbjct: 675 AFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNL----------- 723

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
                     ++S QNR +  ++                +  +I  HC  G++++A    
Sbjct: 724 ----------LVSLQNRKVNLNK--------------YAYTTIIKAHCAKGDVDKAVVYF 759

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           ++M           Y+ ++   C++  V EA+     M   G+ PD   F    +  NA 
Sbjct: 760 RQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLF---EVLLNAF 816

Query: 269 IQGLCKNQEGDLAEELLREMVSKG 292
            Q  C +   +   ELL EM+  G
Sbjct: 817 HQ--CGHLNSEF--ELLAEMIKSG 836



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
           E T + ++ G CRQ + ++A       + +        F P+ +++N ++   CK    D
Sbjct: 246 EYTSSIVVDGLCRQSRFQDAVLFFQDTEGK-------EFQPSVVSFNTIMSRYCKLGFVD 298

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +A+     M+  G+ PD  +Y  LI G+       E+
Sbjct: 299 VAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEA 335


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 166/316 (52%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P   T    +  +C   +   AS  L +M + G  P  VT+ +L++GYC+   
Sbjct: 109 MQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNR 168

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A +  D+++  G  P   TY  LI  L   R +  A ++  +MG  G  P+ +TYN 
Sbjct: 169 IEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNA 228

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  L  +M+ + I+P ++T+T+LI    K  +++EA +L+   +   
Sbjct: 229 LVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMS 288

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  + +LI+G C  G ++ A  +   M+R   +P+EV Y TL+HG C+  +VE+  
Sbjct: 289 VYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGM 348

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  +M ++G+  + I       TY  LIQG C     D+A+E+  +M S+   PD  TY
Sbjct: 349 KIFYEMSQKGVVANTI-------TYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTY 401

Query: 301 FSLIEGIASVDKAAES 316
             L++G+    K  ++
Sbjct: 402 NVLLDGLCCNGKVEKA 417



 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 151/300 (50%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+  TY + V+G+C+ GR  +A+ +L  M +  + P  +T+  LID +   G 
Sbjct: 214 MGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGK 273

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    + M++  + P   TY  LI+ L M   + EA  M   M   G  P+ + Y  
Sbjct: 274 LMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTT 333

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+    +    +  EM  KG+    +TYT LI       R   A ++F    ++ 
Sbjct: 334 LIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRR 393

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI  +N L+DG C NG +E+A  + + M + ++  + VTY  ++ G C+ GKVE+A 
Sbjct: 394 APPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAF 453

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G+KP+ I       TY  +I G C+      A+ L ++M   G  P+++ Y
Sbjct: 454 DLFCSLFSKGMKPNVI-------TYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 9/305 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL-EM 63
           G +P+  TY + +  +CK   L  A  +  QM  NG  P  VTYN L+ G C  G   + 
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A+  RD M+K+ I P   T+  LI   +   K++EA ++   M +  + PD  TY  LIN
Sbjct: 243 AWLLRD-MMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLIN 301

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G   +A  +   M   G  P  + YT+LI    K  R+ +  ++F     KG++ 
Sbjct: 302 GLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVA 361

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + + +  LI G+C  G  + A  +  +M   +  PD  TYN L+ G C  GKVE+A  + 
Sbjct: 362 NTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIF 421

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + M++R +  + +       TY  +IQG+CK  + + A +L   + SKG+ P+  TY ++
Sbjct: 422 EYMRKREMDINIV-------TYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTM 474

Query: 304 IEGIA 308
           I G  
Sbjct: 475 ISGFC 479



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 151/332 (45%), Gaps = 45/332 (13%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +  +A  +  +M  +  +P+ + +  L+         ++  S  ++M   GI P   T N
Sbjct: 63  QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +++H + +  +   A   L +M + G  PD +T+  L+NGYC     + A +L D+++  
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P ++TYT+LI  L K   +  A +LF      G  P++V +NAL+ G C  G    A
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242

Query: 205 FSLLKEMDR-----------------------------------MKVHPDEVTYNTLMHG 229
             LL++M +                                   M V+PD  TY +L++G
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
            C  G ++EAR++   M+R G  P+ +        Y  LI G CK++  +   ++  EM 
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEV-------IYTTLIHGFCKSKRVEDGMKIFYEMS 355

Query: 290 SKGITPDDNTYFSLIEGIASV---DKAAESSN 318
            KG+  +  TY  LI+G   V   D A E  N
Sbjct: 356 QKGVVANTITYTVLIQGYCLVGRPDVAQEVFN 387



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 7/236 (2%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S+Y  ++   L   +  +A D+   M     +P  I +  L++   +        SL ++
Sbjct: 49  SSYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQ 108

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M   GI P + T   ++  +   ++   A       +  G  PD+V F +L++G+C    
Sbjct: 109 MQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNR 168

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           IE A +L  ++  M   P+ VTY TL+   C+   +  A  L +QM   G +P+ +    
Sbjct: 169 IEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVV---- 224

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              TYNAL+ GLC+      A  LLR+M+ + I P+  T+ +LI+    V K  E+
Sbjct: 225 ---TYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEA 277


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 157/295 (53%), Gaps = 10/295 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+ D+ TY S V+G+C  GR  +A+R++  M    +VP  +T+  LI+ +  +G 
Sbjct: 200 MERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGK 259

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  F +EM+++ I P   TYN +IH L M  ++ EA  +L  M  KG  PD +TYN 
Sbjct: 260 FLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNT 319

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +   L  EM  +G+    +T+ ++I    +  R   A ++F      G
Sbjct: 320 LINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM---G 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  ++ L+ G C N  +E+A  L + M + ++  D  TYN ++HG C  G VE+A 
Sbjct: 377 SRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAW 436

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            L   +  +G++PD +       TY  +I G C+ +  D A+ L R+M   G+ P
Sbjct: 437 DLFCSLSFKGLEPDVV-------TYTTMISGFCRKRLWDKADFLYRKMQEDGLLP 484



 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 158/318 (49%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD  T  S ++G C+  R+  A  ++ +M+E       V YNT+IDG+C  G 
Sbjct: 130 MMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGL 189

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+     TYN L+  L    +  +A  ++++M  + IVP+ IT+  
Sbjct: 190 VNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTA 249

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN + R G   +A   ++EMI + I P + TY S+I  L    ++ EA Q+ +  + KG
Sbjct: 250 LINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKG 309

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+V +N LI+G C    ++    L++EM +  +  D VT+NT++ G  + G+ + A+
Sbjct: 310 CFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQ 369

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M  R          P   TY+ L+ GLC N   + A  L   M    +  D  TY
Sbjct: 370 EIFSRMGSR----------PNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTY 419

Query: 301 FSLIEGIASVDKAAESSN 318
             +I G+  +    ++ +
Sbjct: 420 NIVIHGMCMIGNVEDAWD 437



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 148/299 (49%), Gaps = 7/299 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +S + K    +    +   M+  G+     TYN +I+  C      +A S 
Sbjct: 67  PSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSV 126

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M+K G  P   T + LI+      ++  A D++ +M E     D + YN +I+G+C+
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCK 186

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  L   M   G++   +TY SL+  L    R  +A +L  + + + ++P+++ 
Sbjct: 187 TGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVIT 246

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           F ALI+     G    A    +EM R  + PD  TYN+++HG C  G+V+EA+++LD M 
Sbjct: 247 FTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMV 306

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            +G  PD +       TYN LI G CK +  D   +L+REM  +G+  D  T+ ++I+G
Sbjct: 307 TKGCFPDVV-------TYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQG 358



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 10/308 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  D YTY   ++ +C+  R   A  ++ +M + G  P  VT ++LI+G+C    
Sbjct: 95  MEICGIGHDLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 154

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     +M +         YN +I        +  A  +   M   G+  D++TYN 
Sbjct: 155 VFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNS 214

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C  G    A  L  +M+ + I P ++T+T+LI    ++ + +EA + +E  + + 
Sbjct: 215 LVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRC 274

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+  +N++I G C +G ++ A  +L  M      PD VTYNTL++G C+  +V+E  
Sbjct: 275 IDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGT 334

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L+ +M +RG+  D +       T+N +IQG  +    D A+E+   M S+   P+  TY
Sbjct: 335 KLVREMSQRGLVVDTV-------TFNTIIQGYFQAGRPDAAQEIFSRMGSR---PNIRTY 384

Query: 301 FSLIEGIA 308
             L+ G+ 
Sbjct: 385 SILLYGLC 392



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 132/286 (46%), Gaps = 28/286 (9%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           NL+ A      M++   +P+   ++ L+  +   +       +   M   GI  D  TYN
Sbjct: 49  NLDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYN 108

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+IN  CRC     A S+  +M+  G +P ++T +SLI    + NR+  A  L       
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEM 168

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
               D+V++N +IDG C  G +  A  L   M+R  V  D VTYN+L+ G C  G+  +A
Sbjct: 169 RCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDA 228

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
            RL+  M  R I P+ I+F                            +P   TYN++I G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHG 288

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           LC + + D A+++L  MV+KG  PD  TY +LI G     +  E +
Sbjct: 289 LCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGT 334


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 164/305 (53%), Gaps = 8/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  T+ S + G+CKE R+ +A  + ++  E G  P  VTY+TLIDG      
Sbjct: 499 MIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAK 558

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     +MV+ G      TY+ ++  LL   +M +A  +L++M + G +PD++TYN 
Sbjct: 559 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 618

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ +    ++A  L  EM+  G  P+++TYT+L   L +  R  EA ++ +   A+G
Sbjct: 619 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 678

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEA 239
             P+ + +++++DG C  G +  A    ++M R + V P  + Y+ L+ G C+ G+++EA
Sbjct: 679 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEA 738

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
              L++M R G  PD +       T++ LI GLC     D   EL   M  +G   D   
Sbjct: 739 YEFLERMIRAGRIPDVV-------TFSILINGLCDAGRIDTGLELFCGMAERGCKADIYA 791

Query: 300 YFSLI 304
           Y ++I
Sbjct: 792 YNAMI 796



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 163/358 (45%), Gaps = 50/358 (13%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV---------------------P 43
           G+ P+ +TY   + G+CK G      +  EQM E                         P
Sbjct: 412 GISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRP 471

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           T VTYNTL+ G    G +  A    + M++ G+ P   T+N ++  L  E+++++A ++ 
Sbjct: 472 TLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 531

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           K   E+G  P+ +TY+ LI+G  +     +A  L  +M+  G +   +TY++++  L K 
Sbjct: 532 KRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKV 591

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            RM +A  +       G LPD V +N LIDG      +  A  LL+EM     HP  VTY
Sbjct: 592 GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTY 651

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------------------ 259
            TL HG CR G+ +EA  +LD M  RG  P+ I+++                        
Sbjct: 652 TTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMAR 711

Query: 260 -----PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
                P  + Y+ALI GLCK    D A E L  M+  G  PD  T+  LI G+    +
Sbjct: 712 DEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGR 769



 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 62/375 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P++ TY + V+ +  +GR +EA  +LE+M  NG  P  +T+  +I G C +G 
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF   DEMV +G +P    + +L+H L    ++ EA    +++   G  PD++TYN 
Sbjct: 122 IEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNT 181

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G  + G  + A  +   +      PT+ T+T  +  LSK   +  A + F++    G
Sbjct: 182 MVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTG 241

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE-----------------------------M 211
           + P+ V ++ALIDG C  G ++ A  LL++                             +
Sbjct: 242 VSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLL 301

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------ 259
             M   P+ V +N+LM+G C+  +V+EA  L D MK  G   D I++N            
Sbjct: 302 KAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRI 361

Query: 260 -----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVS-KGITPDDNTYF 301
                            P  +T++ LIQGLC     + A E+   MV+ +GI+P+  TY 
Sbjct: 362 PEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYA 421

Query: 302 SLIEGIASVDKAAES 316
            L+EG+    KA +S
Sbjct: 422 FLLEGLC---KAGDS 433



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 158/317 (49%), Gaps = 10/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M +RG  P++ TY S V G+CK GR+ EA    E+M  + +V P  + Y+ LIDG C  G
Sbjct: 674 MAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAG 733

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            ++ A+ F + M++ G +P   T+++LI+ L    ++    ++   M E+G   D   YN
Sbjct: 734 RIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYN 793

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +IN YC  G    A++L +EM   GI    +T+  +I  L   +R+ EA   F +    
Sbjct: 794 AMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED 853

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
               D + +N LI     +   E+A  LL+ M      PD   Y T+M G  + G  E A
Sbjct: 854 --CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVA 911

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +LL +M+ RG  PD         TY  +I GL K ++  LA +   EM+ K + PD   
Sbjct: 912 AKLLQEMRSRGHSPD-------LRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIV 964

Query: 300 YFSLIEGIASVDKAAES 316
           Y SLI+     DK  ++
Sbjct: 965 YSSLIDAFCKADKVDDA 981



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 155/305 (50%), Gaps = 10/305 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY   ++G+CK GR+ +A     +  + G  PT VTY+T+IDG C    ++      +EM
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             +G  P A TYN L++ LL + +  EA  +L+ M   G  P+ IT+ ++I G C+ G  
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           + AF + DEM+ +G  P +  +T L+  L +  R+ EA   F+  L  G  PD V +N +
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           +DG    G +E A  +L+ +      P   T+   + G  + G +  A    D M + G+
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
            P+ +       TY+ALI GLCK  + D+A  LLR+  S+        + SL+ G+    
Sbjct: 243 SPNTV-------TYDALIDGLCKAGKLDIALGLLRDKNSQA---GMFAFSSLLHGLCQAH 292

Query: 312 KAAES 316
           +  E+
Sbjct: 293 RLEEA 297



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 166/362 (45%), Gaps = 51/362 (14%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD+ TY + V G+ K GRLE A  +L+ + E+   PT  T+   +DG    GNL  A
Sbjct: 171 GFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGA 230

Query: 65  FSFRDEMVKQGIMPTASTYNLLI--------------------------------HELLM 92
           + F D M + G+ P   TY+ LI                                H L  
Sbjct: 231 YEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQ 290

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
             ++ EA  +LK M     VP+ + +N L+NG C+     +AF L D M   G    ++T
Sbjct: 291 AHRLEEAIQLLKAMP---CVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVIT 347

Query: 153 YTSLIFVLSKQNRMIEADQLFENFL-AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           Y  L+  L K  R+ EA +  E     +G  P++V F+ LI G C  G + +A+ + + M
Sbjct: 348 YNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERM 407

Query: 212 DRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK-----PDH---ISF---- 258
             ++ + P+  TY  L+ G C+ G      +  +QM  R  +     P H   + F    
Sbjct: 408 VAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQ 467

Query: 259 --NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
              PT +TYN L+ GL K+     A  LL  M+  G++PD  T+ S+++G+    +  ++
Sbjct: 468 VCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDA 527

Query: 317 SN 318
            N
Sbjct: 528 HN 529



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 9/268 (3%)

Query: 46  VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE 105
           VTYN LI+G C  G +  AF+   + ++ G  PT  TY+ +I  L  + ++ +   +L+E
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M  +G  P+++TYN L+N     G AK+AFSL + M   G  P ++T+  +I  L K+  
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           +  A ++ +  + +G +PD+ +   L+   C  G ++ A+   +++  +   PD VTYNT
Sbjct: 122 IEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNT 181

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF-NPTRLTYNALIQGLCKNQEGDLAEEL 284
           ++ G  + G++E A  +L  +          SF +PT  T+   + GL K      A E 
Sbjct: 182 MVDGLYKAGRLEAAGMVLQLLAE--------SFSSPTVFTFTIAVDGLSKAGNLTGAYEF 233

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDK 312
              M   G++P+  TY +LI+G+    K
Sbjct: 234 FDSMPQTGVSPNTVTYDALIDGLCKAGK 261



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 21/261 (8%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M  RG + D Y Y + ++  C +G    A  +LE+MK +G+    VT+  +I   C    
Sbjct: 780  MAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839

Query: 61   LEMAFSF--------RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
            ++ A S+        RDE+          +YN LI  L+  R+  +A ++L+ M   G  
Sbjct: 840  IDEAVSYFHSIPEDCRDEI----------SYNTLITSLVASRRSEQALELLRAMVADGGS 889

Query: 113  PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
            PD+  Y  +++G  + G+ + A  L  EM  +G  P + TYT +I  LSK  ++  A   
Sbjct: 890  PDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDY 949

Query: 173  FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
            FE  L K + PD +++++LID  C    ++ A+ LL+      + P    Y+T++   C+
Sbjct: 950  FEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRSSG---IEPTITMYSTMVDSLCK 1006

Query: 233  QGKVEEARRLLDQMKRRGIKP 253
                ++A  ++ +MK +  +P
Sbjct: 1007 NRGTDKALEVIREMKSKNCEP 1027



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           M+TY  LI  L K  R+ +A   F   +  G  P +V ++ +IDG C +  +++   LL+
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM      P+ VTYNTL++    QG+ +EA  LL++M   G  P+ I       T+  +I
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELI-------TFGLII 113

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +GLCK  E + A  ++ EMV +G  PD   +  L+  +  + +  E+
Sbjct: 114 KGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEA 160


>gi|255660956|gb|ACU25647.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 376

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 159/294 (54%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G  +++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I 
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIV 371



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV  N +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVCNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G + K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+ + Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+   ++T
Sbjct: 335 LEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++  N ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVCNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG  +++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 9/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   + Y +   + G+C+     +A  +L +M+ N L+P   +YNT+I G+C    
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    +EM   G   +  T+ +LI       KM EA   LKEM   G+  D + Y  
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTS 252

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C CG   +  +L DE++ +G  P  +TY +LI    K  ++ EA ++FE  + +G
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG 312

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +  LIDG C  G  + A   L  M      P+ VTYN +++  C+ G V +A 
Sbjct: 313 VRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAV 372

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV--SKGITPDDN 298
            +++ MK+R  +PD+I       TYN L+ GLC   + D A +LL  M+  S    PD  
Sbjct: 373 EIVELMKKRRTRPDNI-------TYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 299 TYFSLIEGIA 308
           +Y +LI G+ 
Sbjct: 426 SYNALIHGLC 435



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 11/317 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  P + TY + + G CK G+L+EAS + E M E G+ P   TY  LIDG C  G  + 
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    + M+++   P A TYN++I++L  +  + +A ++++ M ++   PD+ITYNIL+ 
Sbjct: 336 ALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLG 395

Query: 124 GYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           G C  G+  +A  L   M+       P +++Y +LI  L K+NR+ +A  +++  + K  
Sbjct: 396 GLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG 455

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             D V  N L++     G++ +A  L K++   K+  +  TY  ++ G C+ G +  A+ 
Sbjct: 456 AGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKG 515

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL +M+   ++P       +   YN L+  LCK    D A  L  EM      PD  ++ 
Sbjct: 516 LLCKMRVSELQP-------SVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFN 568

Query: 302 SLIEGI--ASVDKAAES 316
            +I+G   A   K+AES
Sbjct: 569 IMIDGSLKAGDIKSAES 585



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 156/299 (52%), Gaps = 11/299 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNK 58
           MK R  +PD+ TY   + G+C +G L+EAS++L  M ++     P  ++YN LI G C +
Sbjct: 378 MKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
             L  A    D +V++       T N+L++  L    + +A ++ K++ +  IV +S TY
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             +I+G+C+ G    A  L  +M    +QP++  Y  L+  L K+  + +A +LFE    
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR 557

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
               PD+V FN +IDG    G+I+ A SLL  M R  + PD  TY+ L++   + G ++E
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDE 617

Query: 239 ARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           A    D+M   G +PD HI         +++++      E D   EL++++V K I  D
Sbjct: 618 AISFFDKMVDSGFEPDAHIC--------DSVLKYCISQGETDKLTELVKKLVDKDIVLD 668



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 144/319 (45%), Gaps = 28/319 (8%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           E A     +M E       V+ + L++ Y        AF     M+K+G       +N+L
Sbjct: 89  ELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNIL 148

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           +  L    +  +A  +L+EM    ++PD  +YN +I G+C     +KA  L +EM   G 
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
             +++T+  LI    K  +M EA    +     G+  D+V++ +LI G C  G ++R  +
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKA 268

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------- 259
           L  E+      P  +TYNTL+ G C+ G+++EA  + + M  RG++P+  ++        
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLC 328

Query: 260 ---------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                                P  +TYN +I  LCK+     A E++  M  +   PD+ 
Sbjct: 329 GVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNI 388

Query: 299 TYFSLIEGIASVDKAAESS 317
           TY  L+ G+ +     E+S
Sbjct: 389 TYNILLGGLCAKGDLDEAS 407



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 139/292 (47%), Gaps = 8/292 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +L+ A  + +Q  ++G    A   + L+       N E+AFSF  +M++        + +
Sbjct: 53  QLKNAVSVFQQAVDSG-SSLAFAGSNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLS 111

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            L+   +  RK   A  +L  M ++G   +   +NIL+ G CR     KA SL  EM   
Sbjct: 112 GLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRN 171

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + P + +Y ++I    +   + +A +L       G    +V +  LID  C  G ++ A
Sbjct: 172 SLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEA 231

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
              LKEM  M +  D V Y +L+ G C  G+++  + L D++  RG        +P  +T
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGD-------SPCAIT 284

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN LI+G CK  +   A E+   M+ +G+ P+  TY  LI+G+  V K  E+
Sbjct: 285 YNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 36/272 (13%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEA-----------------------------------SRM 32
           PD  +Y + + G+CKE RL +A                                     +
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
            +Q+ ++ +V  + TY  +IDG+C  G L +A     +M    + P+   YN L+  L  
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           E  + +A  + +EM      PD +++NI+I+G  + G+ K A SL   M   G+ P + T
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y+ LI    K   + EA   F+  +  G  PD  + ++++    + G  ++   L+K++ 
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLV 661

Query: 213 RMKVHPDEVTYNTLMHGRCR-QGKVEEARRLL 243
              +  D+    T+M   C     ++ A+RLL
Sbjct: 662 DKDIVLDKELTCTVMDYMCNSSANMDLAKRLL 693


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 157/316 (49%), Gaps = 11/316 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  PD +TY S + G+C  G+L+EA  +L      G  PT +T+  LI+GYC    
Sbjct: 345 MEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAER 403

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   +  M+          Y +LI+ L+ + ++ EA + L EM   G+ P+ +TY  
Sbjct: 404 IDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTS 463

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G    A  +   M H+G  P   TY SLI+ L +  ++ +A  L       G
Sbjct: 464 IIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDG 523

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P ++ +  LI G C     + AF L + M++  + PDE  YN L    C+ G+ EEA 
Sbjct: 524 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAY 583

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L    R+G+         T++TY +L+ G  K    D A  L+ +MV++G   D  TY
Sbjct: 584 SFL---VRKGVV-------LTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTY 633

Query: 301 FSLIEGIASVDKAAES 316
             L++ +    K  E+
Sbjct: 634 SVLLQALCKQKKLNEA 649



 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 156/318 (49%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S   + D   YG  ++ + K+ RL+EA   L +M  NGL P  VTY ++IDGYC  G 
Sbjct: 414 MISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGM 473

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M  +G  P A TY  LI+ L+ ++K+ +A  ++ +M E GI P  ITY  
Sbjct: 474 VGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTT 533

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C+      AF L + M   G+ P    Y  L   L K  R   A++ +   + KG
Sbjct: 534 LIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGR---AEEAYSFLVRKG 590

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++   V + +L+DG    GN + A  L+++M       D  TY+ L+   C+Q K+ EA 
Sbjct: 591 VVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEAL 650

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +LDQM   G+K + ++       Y  +I  + K  + D A+ L  EM+S G  P   TY
Sbjct: 651 SILDQMTVSGVKCNIVA-------YTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTY 703

Query: 301 FSLIEGIASVDKAAESSN 318
              I     + +  E+ +
Sbjct: 704 TVFISSYCKIGRIEEAEH 721



 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 158/321 (49%), Gaps = 26/321 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD   Y      +CK GR EEA   L +    G+V T VTY +L+DG+   GN
Sbjct: 554 MEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVR---KGVVLTKVTYTSLVDGFSKAGN 610

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    ++MV +G      TY++L+  L  ++K+ EA  +L +M   G+  + + Y I
Sbjct: 611 TDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTI 670

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   + G    A SL +EMI  G +P+  TYT  I    K  R+ EA+ L       G
Sbjct: 671 IISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDG 730

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM------------- 227
           + PD+V +N  I+G    G I+RAFS LK M      P+  TY  L+             
Sbjct: 731 VTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHY 790

Query: 228 ---HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
               G     ++    +LL++M + G+       NPT +TY+++I G CK    + A  L
Sbjct: 791 VDTSGMWNWIELNMVWQLLERMMKHGL-------NPTVVTYSSIIAGFCKATRLEEACVL 843

Query: 285 LREMVSKGITPDDNTYFSLIE 305
           L  M+ K I+P++  Y  LI+
Sbjct: 844 LDHMLGKDISPNEEIYTMLIK 864



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 156/379 (41%), Gaps = 64/379 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G+Q D+YT  + + G C+   L +A  +L  M   G      +Y  LI G C    
Sbjct: 205 LRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARC 264

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      MV  G      TY LLI  L  E ++ +A  +L EM  +G+VP   TYN 
Sbjct: 265 VREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNA 324

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GYC+ G  K A  +   M   G  P   TY SLI+ L    ++ EA++L    +A+G
Sbjct: 325 MIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARG 383

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSL--------------------------------- 207
             P ++ F  LI+G+C    I+ A  +                                 
Sbjct: 384 FTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAK 443

Query: 208 --LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------- 258
             L EM    + P+ VTY +++ G C+ G V  A  +   M+  G  P+  ++       
Sbjct: 444 ETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503

Query: 259 ---------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P  +TY  LIQG CK  E D A  L   M   G+TPD+
Sbjct: 504 IQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 563

Query: 298 NTYFSLIEGIASVDKAAES 316
             Y  L + +    +A E+
Sbjct: 564 QAYNVLTDALCKSGRAEEA 582



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 153/319 (47%), Gaps = 43/319 (13%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           E   ++   + + GL+P  VTYNT+I  YC KG+L +A  +   + + G+     T N L
Sbjct: 161 EYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNAL 220

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           +        + +A  +L  M   G   +  +Y ILI G C     ++A  L   M+H G 
Sbjct: 221 LLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGC 280

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
              + TYT LI  L K+ R+ +A  L +    +G++P +  +NA+IDG+C +G ++ A  
Sbjct: 281 SLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALG 340

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           +   M++   +PD+ TYN+L++G C  GK++EA  LL+    RG       F PT +T+ 
Sbjct: 341 IKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARG-------FTPTVITFT 392

Query: 267 ALIQGLCK-----------------NQEGDL------------------AEELLREMVSK 291
            LI G CK                 N + DL                  A+E L EM + 
Sbjct: 393 NLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFAN 452

Query: 292 GITPDDNTYFSLIEGIASV 310
           G+ P+  TY S+I+G   V
Sbjct: 453 GLAPNVVTYTSIIDGYCKV 471



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 150/358 (41%), Gaps = 58/358 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D YTY   +  +CK+ +L EA  +L+QM  +G+    V Y  +I     +G 
Sbjct: 621 MVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S  +EM+  G  P+A+TY + I       ++ EA+ ++ EM   G+ PD +TYNI
Sbjct: 681 HDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNI 740

Query: 121 LINGYCRCGNAKKAFS-------------------------------------------- 136
            ING    G   +AFS                                            
Sbjct: 741 FINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWI 800

Query: 137 -------LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
                  L + M+  G+ PT++TY+S+I    K  R+ EA  L ++ L K + P+  ++ 
Sbjct: 801 ELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYT 860

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            LI   C      +A S + +M      P   +Y+ L+ G C +G  + A+ L   +   
Sbjct: 861 MLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLL-- 918

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                 + +N   + +  L  GL K    D   +LL  M ++    D  +Y  L + I
Sbjct: 919 -----GMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 112/262 (42%), Gaps = 44/262 (16%)

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           R+ V+A   ++ +G K +V     YN+ +    R    +    L+  ++ +G+ P  +TY
Sbjct: 123 REAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTY 182

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
            ++I    K+  +  A + F      GM  D    NAL+ G+C   ++ +A  LL  M  
Sbjct: 183 NTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPL 242

Query: 214 MKVHPDEV-----------------------------------TYNTLMHGRCRQGKVEE 238
           M    +E                                    TY  L+ G C++G++ +
Sbjct: 243 MGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHD 302

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           AR LLD+M  RG+        P+  TYNA+I G CK+     A  +   M   G  PDD 
Sbjct: 303 ARGLLDEMPLRGVV-------PSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDW 355

Query: 299 TYFSLIEGIAS--VDKAAESSN 318
           TY SLI G+    +D+A E  N
Sbjct: 356 TYNSLIYGLCGGKLDEAEELLN 377


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 167/303 (55%), Gaps = 7/303 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P+S+T+   + G CK  RL++A  +   M + G+     T N + D +  +G+
Sbjct: 454 MRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGH 513

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +E+   GI+P + TYN++I  L  E+K  +A ++L  M +  + P +I YN 
Sbjct: 514 FWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNT 573

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GY +  N  KA  L+ +M+  GI P+++TYT LI + S +++M EA  LF+  + KG
Sbjct: 574 LIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKG 633

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD ++F  +I G C  G+++ A++L +EM +    P+ VTY  L+ G  +  ++++A 
Sbjct: 634 LVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKAD 693

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++MKR  + PD        LTY ALI G       D   E+  EM   G+ P+   Y
Sbjct: 694 FLFNKMKRDNVTPDG-------LTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAY 746

Query: 301 FSL 303
            +L
Sbjct: 747 ATL 749



 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 172/351 (49%), Gaps = 45/351 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G+ P +Y+Y   + G+CK+G++E+A  ++E+M ++ + P+ VTY++L DG C  G 
Sbjct: 349 MRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGL 408

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E++ S    +  +G      +YN LI+  +++R M  A  ++ EM   G VP+S T+N 
Sbjct: 409 TEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNR 468

Query: 121 LINGYC-----------------------------------RCGNAKKAFSLHDEMIHKG 145
           LI+G+C                                   R G+  +A  L +E+   G
Sbjct: 469 LIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLG 528

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P   TY  +I  L K+ +  +A ++    L   + P  + +N LIDG+    N  +A 
Sbjct: 529 IVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKAL 588

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  +M ++ + P  VTY  L++    + K++EA  L  +M ++G+ PD I F       
Sbjct: 589 LLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIF------- 641

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
             +I G CK  +   A  L  EM   G +P+  TY  LI+G   I  +DKA
Sbjct: 642 TCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKA 692



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 171/342 (50%), Gaps = 35/342 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEG-----RLEEASRMLEQMKENGLVPTAVTYNTLIDGY 55
           +K  G  P+ +TY   ++  CK        + +A+ +LE+M+ NG  PT VTY   I G 
Sbjct: 239 LKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGL 298

Query: 56  CNKGNLEMAFSF-RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           C  G +E A    RD  ++   +  +  YN +IHE     ++ EA ++L++M   GI P 
Sbjct: 299 CRAGCVEFALRLIRDLRIRNQPL-NSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPT 357

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           + +Y+ILI+G C+ G  +KA  L +EM+   ++P+++TY+SL   L K      +  +F 
Sbjct: 358 AYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFH 417

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           N  A+G   D++ +N LI+G     ++  A  L+ EM      P+  T+N L+HG C++ 
Sbjct: 418 NLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQ 477

Query: 235 KVEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYN 266
           ++++A  +   M + G++ +  + N                            P   TYN
Sbjct: 478 RLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYN 537

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            +I+ LCK Q+ + A E+L  M+   + P    Y +LI+G A
Sbjct: 538 IVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYA 579



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 136/268 (50%), Gaps = 14/268 (5%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKG----NLEM--AFSFRDEMVKQGIMPTASTYNL 85
           + E++K++G  P   TY  +++ YC KG    N+++  A    +EM   G  PT  TY  
Sbjct: 235 LFEELKDSGPSPNVFTYTIMMNYYC-KGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGA 293

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
            IH L     +  A  +++++  +    +S  YN +I+ +CR G   +AF L ++M   G
Sbjct: 294 YIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHG 353

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I PT  +Y+ LI  L K+ ++ +A  L E  +   + P +V +++L DG C +G  E + 
Sbjct: 354 ISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISL 413

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           S+   +       D ++YNTL++G   Q  +  A +L+ +M+  G  P+         T+
Sbjct: 414 SMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPN-------SFTF 466

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGI 293
           N LI G CK Q  D A E+   M+  G+
Sbjct: 467 NRLIHGFCKRQRLDKALEVFTIMLKVGV 494



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 14/231 (6%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N+LI        +V+A D+  +    G+  + ++ N L+N +      +   SL +E+  
Sbjct: 182 NVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKD 241

Query: 144 KGIQPTMLTYTSLIFVLSKQN-----RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
            G  P + TYT ++    K +      +++A ++ E     G  P +V + A I G C  
Sbjct: 242 SGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRA 301

Query: 199 GNIERAFSLLKEMDRMKVHP-DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           G +E A  L++++ R++  P +   YN ++H  CR G++ EA  LL+ M+  GI      
Sbjct: 302 GCVEFALRLIRDL-RIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGI------ 354

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            +PT  +Y+ LI GLCK  + + A +L+ EMV   + P   TY SL +G+ 
Sbjct: 355 -SPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLC 404


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 172/340 (50%), Gaps = 43/340 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
           M   G  PD+++Y + +  +C   R +EA  ML +M K +G  P  V+Y  +I G   +G
Sbjct: 227 MSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEG 286

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  A +  +EMV++G++P   TYN ++H L   R M +A+ +L++M +  I PD +TY 
Sbjct: 287 EISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYT 346

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I+GY   G  K+A  +  EM  +G+ P ++T+ SL+  L K  R  EA ++F +   K
Sbjct: 347 AMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATK 406

Query: 180 GMLPDIV-----------------------------------MFNALIDGHCTNGNIERA 204
           G  PDI+                                    FN LI+ H   G ++ A
Sbjct: 407 GHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEA 466

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +  EM    V P+ VTY T++   CR G++ +A   L QM   G+KP+ +        
Sbjct: 467 LLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTV-------V 519

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           Y++LIQG C + +   A+EL+ EM+ +GI   + T+FS I
Sbjct: 520 YHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSI 559



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 168/307 (54%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    +QPD  TY + + G    GR +EA++M ++M   GL+P  VT+N+L+D  C    
Sbjct: 333 MFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKR 392

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A      +  +G  P   +Y++L+H    E + V+ +++   M + GIV DS  +NI
Sbjct: 393 SKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNI 452

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN + + G   +A  +  EM  +G+ P ++TY ++I  L +  R+ +A +     ++ G
Sbjct: 453 LINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIG 512

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           + P+ V++++LI G CT+G++ +A  L+ EM D+    P+   +++++H  C +G+V  A
Sbjct: 513 LKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNA 572

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + + + +   G +PD         T+N+LI G C   + D A  +L  MVS G  PD  T
Sbjct: 573 QDVFNLVIHIGDRPD-------IFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVT 625

Query: 300 YFSLIEG 306
           Y +LI G
Sbjct: 626 YSTLING 632



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 167/308 (54%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + ++G +PD  +Y   + G   EGR  + + +   M +NG+V  +  +N LI+ +  +G 
Sbjct: 403 IATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGM 462

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     EM  QG+ P   TY  +I  L    ++ +A + L +M   G+ P+++ Y+ 
Sbjct: 463 MDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHS 522

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI G+C  G+  KA  L  EM+ +GI +P +  ++S+I  L  + R++ A  +F   +  
Sbjct: 523 LIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHI 582

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  FN+LIDG+C  G +++AF +L  M      PD VTY+TL++G  + G++++ 
Sbjct: 583 GDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDG 642

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L  +M  + +KP       T +TY+ ++ GL +      A+++  EM+  G     +T
Sbjct: 643 LILFREMLCKRVKP-------TTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIST 695

Query: 300 YFSLIEGI 307
           Y  +++G+
Sbjct: 696 YTIILQGL 703



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 145/331 (43%), Gaps = 43/331 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +GV P+  TY + ++ +C+ GRL +A   L QM   GL P  V Y++LI G+C  G+
Sbjct: 473 MRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGD 532

Query: 61  LEMAFSFRDEMVKQGI-MPTASTYNLLIHELLMERKMVEADDM----------------- 102
           L  A     EM+ QGI  P  + ++ +IH L  E +++ A D+                 
Sbjct: 533 LIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFN 592

Query: 103 ------------------LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                             L  M   G  PD +TY+ LINGY + G       L  EM+ K
Sbjct: 593 SLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCK 652

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            ++PT +TY+ ++  L +  R   A ++F   +  G    I  +  ++ G C N   + A
Sbjct: 653 RVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEA 712

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            +L  ++  M +  +    NT++H   +  + EEA  L   +   G+ P+         T
Sbjct: 713 ITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPN-------AST 765

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           Y  +I  L K    + A+ +   M   G  P
Sbjct: 766 YGVMIINLLKEGSVEEADIMFSSMEKTGCAP 796



 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 144/281 (51%), Gaps = 10/281 (3%)

Query: 41  LVPTAV-TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99
           +VP  V TY  L+D  C     ++  +F   +++ G+       N  +  L   ++  EA
Sbjct: 160 VVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEA 219

Query: 100 DDML-KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH-KGIQPTMLTYTSLI 157
             ML   M E G VPD+ +YN +I   C    +++A  +   M    G  P +++YT +I
Sbjct: 220 LSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVI 279

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L  +  + +A  LF   + KG++P++V +N+++   C    +++A  +L++M    + 
Sbjct: 280 HGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQ 339

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           PDEVTY  ++HG    G+ +EA ++  +M R G+ PD +       T+N+L+  LCK++ 
Sbjct: 340 PDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIV-------TFNSLMDSLCKHKR 392

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              A E+   + +KG  PD  +Y  L+ G A+  +  + +N
Sbjct: 393 SKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNN 433



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 114/235 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD +T+ S + G C  G++++A  +L+ M   G  P  VTY+TLI+GY   G ++  
Sbjct: 583 GDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDG 642

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM+ + + PT  TY+L++  L    +   A  M  EM E G      TY I++ G
Sbjct: 643 LILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQG 702

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A +L  ++    ++  +    ++I  L K  R  EA  LF +  A G++P+
Sbjct: 703 LCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPN 762

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
              +  +I      G++E A  +   M++    P     N ++    ++G++ +A
Sbjct: 763 ASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKA 817



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 21/270 (7%)

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD-----------MLKEMGEKG 110
           E A    DE+++Q         N  +  L   R  V   D           + +E     
Sbjct: 100 EDAHHLFDELLRQDTPVHGRALNGFLAALARARDSVACSDAPALAVALFNRICREEAGPR 159

Query: 111 IVPDSI-TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           +VP ++ TY IL++  CR        +    ++  G++   +   + +  L    R  EA
Sbjct: 160 VVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEA 219

Query: 170 DQLFENFLAK-GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLM 227
             +  + +++ G +PD   +N +I   C     + A  +L  M +     PD V+Y  ++
Sbjct: 220 LSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVI 279

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
           HG   +G++ +A  L ++M ++G+ P+ +       TYN+++  LCK +  D AE +LR+
Sbjct: 280 HGLFMEGEISKACNLFNEMVQKGVVPNVV-------TYNSIVHALCKARAMDKAELVLRQ 332

Query: 288 MVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           M    I PD+ TY ++I G + + +  E++
Sbjct: 333 MFDNSIQPDEVTYTAMIHGYSCLGRWKEAA 362



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G +PD  TY + ++G  K GR+++   +  +M    + PT VTY+ ++DG    G 
Sbjct: 614 MVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGR 673

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM++ G   + STY +++  L       EA  +  ++G   +  +    N 
Sbjct: 674 TSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNT 733

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+   +    ++A  L   +   G+ P   TY  +I  L K+  + EAD +F +    G
Sbjct: 734 MIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTG 793

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P   + N +I      G I +A   + ++D   +  +  T + L+     +G+  E  
Sbjct: 794 CAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKGRYREQI 853

Query: 241 RLL 243
           + L
Sbjct: 854 KFL 856


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 161/291 (55%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K+M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 175/317 (55%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  ++M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 136/222 (61%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF    +MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 168/311 (54%), Gaps = 21/311 (6%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD  TY + + G+C E R+ +A+ +  +M++ G  P A+TY TL+ G C  GN+ +
Sbjct: 160 RGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISI 219

Query: 64  AFSFRDEMVKQGIM------PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           A     EM+    +      P   +Y+++I  L  +R+  EA D+ +EM  +G+ P  I+
Sbjct: 220 ALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVIS 279

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  L+         ++A  L +EM+++G+QP ++T+  LI VL K+ ++IEA  L E  +
Sbjct: 280 YTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMI 331

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G++P+++ +N+LI+G C  G++  A  L   M      PD + Y  L++G C+  KVE
Sbjct: 332 QRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVE 391

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA +L + M + G +PD         TY AL+ GL +  +   A++L   M   GI  D 
Sbjct: 392 EAMKLYNGMLQVGKRPD-------VKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDL 444

Query: 298 NTYFSLIEGIA 308
             Y   + G+ 
Sbjct: 445 YIYGIFLNGLC 455



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 156/315 (49%), Gaps = 21/315 (6%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P   ++   +SG+ K     +   +  QM+ +G+ P   T N L++  CN   +    + 
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++++G +P   TY  LI  L ME ++ +A  +   M + G  P++ITY  L+ G CR
Sbjct: 154 MAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCR 213

Query: 128 CGNAKKAFSLHDEMIHKG------IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
            GN   A  LH EM++         +P +++Y+ +I  L K  R  EA  LFE    +GM
Sbjct: 214 TGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGM 273

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P ++ + +L+         E A  L  EM    V P+ VT+N L+   C++GKV EA+ 
Sbjct: 274 TPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKD 325

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           LL+ M +RGI P+        LTYN+LI+G C   + + A EL   M SKG  PD   Y 
Sbjct: 326 LLEVMIQRGIVPN-------LLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYT 378

Query: 302 SLIEGIASVDKAAES 316
            LI G     K  E+
Sbjct: 379 VLINGYCKTSKVEEA 393



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++GVQP+  T+   +  +CKEG++ EA  +LE M + G+VP  +TYN+LI+G+C  G+
Sbjct: 295 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A      M  +G  P    Y +LI+      K+ EA  +   M + G  PD  TY  
Sbjct: 355 LNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGA 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G  + G    A  L   M   GI   +  Y   +  L K   + EA +LF    +  
Sbjct: 415 LLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYN 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI  FN LIDG C  G +E A+ L +++ + ++ PD VTYN ++H  CR G+V +A 
Sbjct: 475 IKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKAN 534

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            L  +M++ G  PD       ++TY  LI+G  ++++ +   ELL  MV + ++ D N
Sbjct: 535 ILFQKMEKNGCTPD-------KITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVN 585



 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 156/307 (50%), Gaps = 15/307 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK +G+ P   +Y S +         EEA R+  +M   G+ P  VT+N LID  C +G 
Sbjct: 268 MKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGK 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M+++GI+P   TYN LI    +   +  A ++   M  KG  PD I Y +
Sbjct: 320 VIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTV 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+    ++A  L++ M+  G +P + TY +L+  L +  ++ +A +LF      G
Sbjct: 380 LINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYG 439

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D+ ++   ++G C NG +  A  L  ++    +  D   +N L+ G C+ GK+E A 
Sbjct: 440 IPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAW 499

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L +++ +  ++PD +       TYN +I   C+  +   A  L ++M   G TPD  TY
Sbjct: 500 ELFEKLPQEELQPDVV-------TYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITY 552

Query: 301 FSLIEGI 307
            +LI G 
Sbjct: 553 ATLIRGF 559



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 157/322 (48%), Gaps = 21/322 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD  T    ++ +C   R+ E   ++  +   G +P  VTY TLI G C +  
Sbjct: 122 MRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHR 181

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA----DDMLKEMGEKGI--VPD 114
           +  A      M K G  P A TY  L+  L     +  A     +ML +    GI   P 
Sbjct: 182 ISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPV 241

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            I+Y+I+I+  C+     +A  L +EM  +G+ PT+++YTSL++         EA +LF 
Sbjct: 242 VISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWE--------EAKRLFN 293

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G+ P++V FN LID  C  G +  A  LL+ M +  + P+ +TYN+L+ G C  G
Sbjct: 294 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVG 353

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +  AR L   M  +G +PD I        Y  LI G CK  + + A +L   M+  G  
Sbjct: 354 DLNSARELFVSMPSKGCEPDVIC-------YTVLINGYCKTSKVEEAMKLYNGMLQVGKR 406

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           PD  TY +L+ G+    K  ++
Sbjct: 407 PDVKTYGALLTGLFQGGKVGDA 428



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 28/283 (9%)

Query: 56  CNKGNLE--MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           C  GN+    AF F   M+     P  S++  L+  L   +   +   +  +M   GI P
Sbjct: 70  CKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D  T NIL+N  C      +  ++   ++ +G  P ++TYT+LI  L  ++R+ +A  LF
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR------MKVHPDEVTYNTLM 227
                 G  P+ + +  L+ G C  GNI  A  L +EM        +   P  ++Y+ ++
Sbjct: 190 TRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIII 249

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------------------PTRLTYNA 267
              C+  + +EAR L ++MK +G+ P  IS+                     P  +T+N 
Sbjct: 250 DALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNV 309

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           LI  LCK  +   A++LL  M+ +GI P+  TY SLIEG   V
Sbjct: 310 LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLV 352



 Score = 42.7 bits (99), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 12/125 (9%)

Query: 195 HCTNGNIE--RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +C  GNI   +AF     M      P   ++  L+ G  +     +   L +QM+  GI 
Sbjct: 69  NCKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGIS 128

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---S 309
           PD         T N L+  LC          ++  ++ +G  PD  TY +LI+G+     
Sbjct: 129 PDCC-------TLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHR 181

Query: 310 VDKAA 314
           + KAA
Sbjct: 182 ISKAA 186


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 160/300 (53%), Gaps = 7/300 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD  TY + +SG C++G++ EA  +LE   + GL P  ++Y  LI  YC +G    A
Sbjct: 340 GCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRA 399

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F     M ++G       Y  L+H L+   ++  A  +  +M E+G++PD+  YN+L+NG
Sbjct: 400 FDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNG 459

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A  L  EM+H+ +        +L+    +  ++ EA +LFE  +AKGM P 
Sbjct: 460 LCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPG 519

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +NA+I G+C  G +  A + ++ M      PDE TY+T++ G  +Q  +  A +L  
Sbjct: 520 VVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFG 579

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM ++  KP+ +       TY +LI G C+  +   AE+   EM S G+ P+  TY  LI
Sbjct: 580 QMVKQKCKPNVV-------TYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILI 632



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 164/361 (45%), Gaps = 63/361 (17%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+Y+    V G+CKE ++EE  +++      G +P  V YNTL+DGY  +G++E A    
Sbjct: 204 DNYSVCIMVRGLCKERKVEEGRKLINDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLF 263

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI----------------- 111
            E+  +G +PT  TY ++I+ L  +      D +L EM E+G+                 
Sbjct: 264 KELKMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKH 323

Query: 112 ------------------VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
                              PD  TYN LI+G CR G   +A  L +  I +G+ P  L+Y
Sbjct: 324 GCKIEVGKTLRWITENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSY 383

Query: 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           T LI V  KQ + + A  LF     KG   D+V + AL+ G    G ++ A ++  +M  
Sbjct: 384 TPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVE 443

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI----------------- 256
             V PD   YN LM+G C++G++  A+ LL +M  + +  D                   
Sbjct: 444 RGVLPDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDE 503

Query: 257 -----------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                        +P  + YNA+I+G CK    + A   ++ M     +PD+ TY ++I+
Sbjct: 504 AKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIID 563

Query: 306 G 306
           G
Sbjct: 564 G 564



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 150/337 (44%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           MK + + P        V      G +  A  +     + +  +P  +  N L++    + 
Sbjct: 125 MKCKDLAPTREALSFVVGAYVDSGLVNRALELYHIAYDIHNYLPDVIACNALLNALIQQK 184

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +E+A    +EMVK+       +  +++  L  ERK+ E   ++ +   KG +P+ + YN
Sbjct: 185 KVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEGRKLINDRWGKGCIPNIVFYN 244

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GY + G+ ++A  L  E+  KG  PT  TY  +I  L K+      D L      +
Sbjct: 245 TLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGLLVEMKER 304

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  ++ ++N+++D    +G        L+ +      PD  TYNTL+ G CR GKV EA
Sbjct: 305 GVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISGSCRDGKVHEA 364

Query: 240 RRLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQG 271
             LL+   +RG+ P+ +S+ P                              + Y AL+ G
Sbjct: 365 EELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDLVAYGALVHG 424

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           L    E D+A  +  +MV +G+ PD N Y  L+ G+ 
Sbjct: 425 LVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLC 461



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 14/252 (5%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G+ P    Y + + G CK G + +A   +++MK+    P   TY+T+IDGY  + +L 
Sbjct: 513 AKGMDPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLH 572

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     +MVKQ   P   TY  LI+          A+   +EM   G+ P+ +TY ILI
Sbjct: 573 NALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILI 632

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---------FVLSKQNRMIEAD--- 170
             +C+ G   KA S  + M+     P  +T+  LI          V +K N  +E     
Sbjct: 633 GCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASL 692

Query: 171 --QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
               F   ++ G    +  +N+++   C +  +  A  L  +M    + PD V++  L++
Sbjct: 693 MMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVY 752

Query: 229 GRCRQGKVEEAR 240
           G C +G+ +E +
Sbjct: 753 GLCLEGRSKEWK 764



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 18/215 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK     PD +TY + + G  K+  L  A ++  QM +    P  VTY +LI+G+C  G+
Sbjct: 546 MKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGD 605

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    +EM   G+ P   TY +LI     E K+ +A    + M     +P+ +T+N 
Sbjct: 606 SSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNY 665

Query: 121 LINGYCRCGNAKKAFS----------------LHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           LING     N   A S                    MI  G +  +  Y S++  L    
Sbjct: 666 LINGLT--NNLATAVSNKANESLEIKASLMMDFFRTMISDGWEQRVAAYNSVLICLCHHK 723

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
            +  A QL +    KG+ PD V F AL+ G C  G
Sbjct: 724 MVNAALQLRDKMTGKGIFPDPVSFAALVYGLCLEG 758


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 177/345 (51%), Gaps = 32/345 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD+ TY + +  M K+GRL +   +L  MK NGLVP  VTYN L+ GYC  G+L+ AF
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAF 295

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              + M +  I+P   TYN+LI+ +     + E  +++  M    + PD +TYN LI+G 
Sbjct: 296 QIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGC 355

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-KGMLPD 184
              G + +A  L ++M + G++P  +T+   +  L K+ +  E  +  +  +   G  PD
Sbjct: 356 FELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPD 415

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV ++ LI  +   G++  A  +++EM +  +  + +T NT++   C++ KV+EA  LLD
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLD 475

Query: 245 QMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQ 276
              +RG   D +++                             PT  T+N+LI GLC + 
Sbjct: 476 SAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHG 535

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAESSN 318
           + +LA E   E+   G+ PDD T+ S+I G      V+KA E  N
Sbjct: 536 KTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYN 580



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 167/318 (52%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M++ GV+P+  T+   +  +CKE + EE +R ++++ E +G  P  VTY+TLI  Y   G
Sbjct: 371 MENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVG 430

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +L  A     EM ++GI     T N ++  L  ERK+ EA ++L    ++G + D +TY 
Sbjct: 431 DLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYG 490

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI GY R    +KAF + DEM    I PT+ T+ SLI  L    +   A + F+     
Sbjct: 491 TLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAES 550

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+LPD   FN++I G+C  G +E+AF    E  +    PD  T N L++G C++G  E+A
Sbjct: 551 GLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKA 610

Query: 240 RRLLDQM-KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
               + +   R +           +TYN +I   CK+++   A +LL EM  K + PD  
Sbjct: 611 LNFFNTLITEREVD---------TVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRF 661

Query: 299 TYFSLIEGIASVDKAAES 316
           TY S+I  +    K +E+
Sbjct: 662 TYNSIITSLMEDGKLSEA 679



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 153/308 (49%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   + PD  TY   ++G+C  G + E   +++ MK   L P  VTYNTLIDG    G 
Sbjct: 301 MKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGL 360

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE-KGIVPDSITYN 119
              A    ++M   G+ P   T+N+ +  L  E K  E    +KE+ E  G  PD +TY+
Sbjct: 361 SLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYH 420

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI  Y + G+   A  +  EM  KGI+   +T  +++  L K+ ++ EA  L ++   +
Sbjct: 421 TLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKR 480

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G + D V +  LI G+     +E+AF +  EM R+K+ P   T+N+L+ G C  GK E A
Sbjct: 481 GYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELA 540

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
               D++   G+ PD  +FN       ++I G CK    + A E   E +     PD+ T
Sbjct: 541 MEKFDELAESGLLPDDCTFN-------SIILGYCKEGRVEKAFEFYNESIKHSFKPDNYT 593

Query: 300 YFSLIEGI 307
              L+ G+
Sbjct: 594 CNILLNGL 601



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 158/308 (51%), Gaps = 12/308 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG---YCNKGNLEMA 64
           P    +   +S     G+   A ++ ++M    L P  +T NTL+ G   Y +  ++  A
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASA 188

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILIN 123
               D+MVK G+     T+N+L++   +E K+ +A  ML+ M  E  + PD++TYN ++ 
Sbjct: 189 REVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILK 248

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
              + G       L  +M   G+ P  +TY +L++   K   + EA Q+ E      +LP
Sbjct: 249 AMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILP 308

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+  +N LI+G C  G+I     L+  M  +K+ PD VTYNTL+ G    G   EA++L+
Sbjct: 309 DLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLM 368

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS-KGITPDDNTYFS 302
           +QM+  G+KP+ +       T+N  ++ LCK ++ +     ++E+V   G +PD  TY +
Sbjct: 369 EQMENDGVKPNQV-------THNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHT 421

Query: 303 LIEGIASV 310
           LI+    V
Sbjct: 422 LIKAYLKV 429



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 1/246 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ ++ T  + +  +CKE +++EA  +L+   + G +   VTY TLI GY  +  
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEK 501

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF   DEM +  I PT +T+N LI  L    K   A +   E+ E G++PD  T+N 
Sbjct: 502 VEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNS 561

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G  +KAF  ++E I    +P   T   L+  L K+    +A   F   + + 
Sbjct: 562 IILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITER 621

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + D V +N +I   C +  ++ A+ LL EM+  ++ PD  TYN+++      GK+ EA 
Sbjct: 622 EV-DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEAD 680

Query: 241 RLLDQM 246
            LL + 
Sbjct: 681 ELLKKF 686



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 99/179 (55%), Gaps = 1/179 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   + P   T+ S + G+C  G+ E A    +++ E+GL+P   T+N++I GYC +G 
Sbjct: 512 MKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGR 571

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F +E +K    P   T N+L++ L  E    +A +    +  +  V D++TYN 
Sbjct: 572 VEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV-DTVTYNT 630

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +I+ +C+    K+A+ L  EM  K ++P   TY S+I  L +  ++ EAD+L + F  K
Sbjct: 631 MISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFSGK 689



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 98/203 (48%), Gaps = 15/203 (7%)

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ----PTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           L+  Y R  +A  + SL + ++H  +     P+   +   +       +   A Q+F+  
Sbjct: 100 LLVSYIRTSDA--SLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHAGKPHVALQVFQKM 157

Query: 177 LAKGMLPDIVMFNALIDG---HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           +   + P+++  N L+ G   + ++ +I  A  +  +M ++ V  D  T+N L++G C +
Sbjct: 158 IRLKLKPNLLTCNTLLIGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLE 217

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           GK+E+A  +L++M          + NP  +TYN +++ + K       ++LL +M   G+
Sbjct: 218 GKLEDALGMLERM------VSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGL 271

Query: 294 TPDDNTYFSLIEGIASVDKAAES 316
            P+  TY +L+ G   +    E+
Sbjct: 272 VPNRVTYNNLVYGYCKLGSLKEA 294


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 162/307 (52%), Gaps = 9/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
           G  PD ++Y   +  +C +G+  +A  +L  M E G V  P  V YNT+IDG+  +G++ 
Sbjct: 180 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 239

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EMV++GI P   TYN ++H L   R M +A+  L++M  K ++P++ TYN LI
Sbjct: 240 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 299

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            GY   G  K+A  +  EM    I P ++T + L+  L K  ++ EA  +F+    KG  
Sbjct: 300 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 359

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +N +++G+ T G +     L   M    + PD  T+N L+      G +++A  +
Sbjct: 360 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 419

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++M+  G+KPD +       TY  +I  LC+  + D A E   +M+ +G+ PD   Y  
Sbjct: 420 FNEMRDHGVKPDVV-------TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 472

Query: 303 LIEGIAS 309
           LI+G  +
Sbjct: 473 LIQGFCT 479



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 168/342 (49%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ V P+++TY + + G    G+ +EA R+ ++M+ + ++P  VT + L+   C  G 
Sbjct: 283 MVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 342

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M  +G  P   +YN++++    +  +V+  D+   M   GI PD  T+N+
Sbjct: 343 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNV 402

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y  CG   KA  + +EM   G++P ++TY ++I  L +  +M +A + F   + +G
Sbjct: 403 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 462

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE--------------------------MDRM 214
           + PD   +N LI G CT+G++ +A  L+ E                          MD  
Sbjct: 463 VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 522

Query: 215 KV---------HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +         HPD V YN LM G C  GK+E+A R+ D M   GI+P+ +        Y
Sbjct: 523 NIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG-------Y 575

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             L+ G CK    D    L REM+ +GI P    Y  +I+G+
Sbjct: 576 GTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 617



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD ++Y   ++G   +G L + + + + M  +G+ P   T+N LI  Y N G 
Sbjct: 353 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGM 412

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM   G+ P   TY  +I  L    KM +A +   +M ++G+ PD   YN 
Sbjct: 413 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 472

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  E+++ G+   ++ ++S+I  L K  R+++A  +F+  +  G
Sbjct: 473 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 532

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++N L+DG+C  G +E+A  +   M    + P+ V Y TL++G C+ G+++E  
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 592

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RGIKP  I        Y+ +I GL +      A+    EM   GI  D  TY
Sbjct: 593 SLFREMLQRGIKPSTI-------LYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTY 645

Query: 301 FSLIEGI 307
             ++ G+
Sbjct: 646 NIVLRGL 652



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD Y Y   + G C  G L +A  ++ ++  NG+    V ++++I+  C  G 
Sbjct: 458 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 517

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D  V  G+ P A  YN+L+    +  KM +A  +   M   GI P+ + Y  
Sbjct: 518 VMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGT 577

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ G   +  SL  EM+ +GI+P+ + Y+ +I  L +  R + A   F      G
Sbjct: 578 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESG 637

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI  +N ++ G   N   + A  L KE+  M V  + +T NT++ G  +  +VEEA+
Sbjct: 638 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK 697

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L   + R  + P  +       TY+ +I  L K    + AE++   M + G  P+
Sbjct: 698 DLFASISRSRLVPSVV-------TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 746



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 153/307 (49%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TY + ++ +C+ G++++A     QM + G+ P    YN LI G+C  G+
Sbjct: 423 MRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGS 482

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     E++  G+      ++ +I+ L    ++++A ++       G+ PD++ YN+
Sbjct: 483 LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNM 542

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  +KA  + D M+  GI+P ++ Y +L+    K  R+ E   LF   L +G
Sbjct: 543 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRG 602

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  ++++ +IDG    G    A     EM    +  D  TYN ++ G  +    +EA 
Sbjct: 603 IKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAI 662

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++   +K + I       T N +I G+ + +  + A++L   +    + P   TY
Sbjct: 663 FLFKELRAMNVKINII-------TLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTY 715

Query: 301 FSLIEGI 307
             +I  +
Sbjct: 716 SIMITNL 722



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 142/338 (42%), Gaps = 66/338 (19%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           L PT+ TY  L+D        E+A +F  ++++ G+       N L+      ++  EA 
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 100 DDMLKEMGEKGIVPDSITYNIL-------------------------------------I 122
           D +L    E G VPD  +Y+IL                                     I
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 229

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + G+  KA  L  EM+ +GI P ++TY S++  L K   M +A+      + K +L
Sbjct: 230 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 289

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+   +N LI G+ + G  + A  + KEM R  + PD VT + LM   C+ GK++EAR +
Sbjct: 290 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 349

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D M  +G  PD  S+N                            P   T+N LI+    
Sbjct: 350 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 409

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               D A  +  EM   G+ PD  TY ++I  +  + K
Sbjct: 410 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 447



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 122/253 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+  Y   + G C  G++E+A R+ + M   G+ P  V Y TL++GYC  G ++  
Sbjct: 532 GLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEG 591

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM+++GI P+   Y+++I  L    + V A     EM E GI  D  TYNI++ G
Sbjct: 592 LSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 651

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +     +A  L  E+    ++  ++T  ++I  + +  R+ EA  LF +     ++P 
Sbjct: 652 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 711

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ +I      G +E A  +   M      P+    N ++    ++ ++  A   L 
Sbjct: 712 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 771

Query: 245 QMKRRGIKPDHIS 257
           ++  R    +H++
Sbjct: 772 KIDERNFSLEHLT 784



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 116/243 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   YG+ V+G CK GR++E   +  +M + G+ P+ + Y+ +IDG    G 
Sbjct: 563 MVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGR 622

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM + GI     TYN+++  L   R   EA  + KE+    +  + IT N 
Sbjct: 623 TVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 682

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  +    ++A  L   +    + P+++TY+ +I  L K+  + EA+ +F +    G
Sbjct: 683 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 742

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+  + N ++        I RA + L ++D      + +T   L+     +G   E  
Sbjct: 743 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQI 802

Query: 241 RLL 243
           R L
Sbjct: 803 RFL 805



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 103/233 (44%), Gaps = 23/233 (9%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILI--------NGYCRCGNAKKAFSLHDEMIHKG---- 145
           EA D+L E+  +G        N  +        +  CR G A  A +L +    +     
Sbjct: 50  EAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPAL-AVALFNRAASRAQGPR 108

Query: 146 -IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + PT  TY  L+   ++ +R   A   F   L  G+  +I++ N L++G C     + A
Sbjct: 109 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA 168

Query: 205 FS-LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              LL     +   PD  +Y+ L+   C QGK  +A  LL  M   G        +P  +
Sbjct: 169 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-----VCSPNVV 223

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
            YN +I G  K  + + A +L +EMV +GI PD  TY S++  +    ++DKA
Sbjct: 224 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 276


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 28/333 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TY +   G    G +  A +++++M   GL P  VTY TLI G+C  GN
Sbjct: 332 MEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGN 391

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   R E + +G       YN+L+  L    ++ EA  +  EM    + PD I Y+I
Sbjct: 392 IEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSI 451

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  ++A+ L+++M  K   P      +++  L K   + EA   F+ +    
Sbjct: 452 LIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMD 511

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D+V++N +IDG+     I  A  L  +M    + P  VT+NTL++G CR+G + EAR
Sbjct: 512 LMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEAR 571

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           ++L+ ++ +G+ P  +++                             PT +TY  LI+GL
Sbjct: 572 KMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGL 631

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           C+  +   + +LL  M +KG+ PD  TY ++I+
Sbjct: 632 CRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQ 664



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRG + +   Y   +S +CK GR+EEA  + ++M+   L P  + Y+ LI G C +G ++
Sbjct: 404 SRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQ 463

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+   ++M  +   P       ++  L     + EA +         ++ D + YNI+I
Sbjct: 464 RAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMI 523

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +GY R     +A  L+ +MI +GI P+++T+ +LI    ++  ++EA ++ E    KG++
Sbjct: 524 DGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLV 583

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P +V +  L++ +C  GN++  F  L EM+   V P  VTY  L+ G CRQ K+ E+ +L
Sbjct: 584 PSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQL 643

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L+ M  +G+ PD +       TYN +IQ  CK +E   A +L   M+     P   TY  
Sbjct: 644 LEYMYAKGLLPDSV-------TYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKV 696

Query: 303 LIEGIA 308
           LI  + 
Sbjct: 697 LINALC 702



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 159/339 (46%), Gaps = 42/339 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK-------------------ENG- 40
           M++  ++PD   Y   + G+CKEG ++ A ++ EQM+                   +NG 
Sbjct: 437 METLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGN 496

Query: 41  ---------------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                          L+   V YN +IDGY     +  A     +M+++GI P+  T+N 
Sbjct: 497 ISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNT 556

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+       ++EA  ML+ +  KG+VP  +TY  L+N YC  GN ++ F    EM    
Sbjct: 557 LINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANA 616

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + PT +TYT LI  L +QN+M E+ QL E   AKG+LPD V +N +I   C    I +A 
Sbjct: 617 VVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKAL 676

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L   M      P +VTY  L++  C  G +++  R++  ++ R I          + TY
Sbjct: 677 QLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNI-------TLKKXTY 729

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
             +I+  C   +   A     +M++KG       Y ++I
Sbjct: 730 MTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVI 768



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 132/254 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P   T+ + ++G C+ G L EA +MLE ++  GLVP+ VTY TL++ YC  GN
Sbjct: 542 MIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGN 601

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++  F F  EM    ++PT  TY +LI  L  + KM E+  +L+ M  KG++PDS+TYN 
Sbjct: 602 MQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNT 661

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C+     KA  L++ M+     PT +TY  LI  L     + + D++  +   + 
Sbjct: 662 IIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRN 721

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +      +  +I  HC  G + +A     +M           Y+ +++  C++G + EA+
Sbjct: 722 ITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAK 781

Query: 241 RLLDQMKRRGIKPD 254
                M   G+ PD
Sbjct: 782 YFFVMMLSEGVTPD 795



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 160/340 (47%), Gaps = 32/340 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P   +  + +S  CK G ++ A      M +NGL+  + +YN L+ G C  G+++ A 
Sbjct: 267 VGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEAL 326

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F D+M K G+ P   TYN L    L+   M  A  ++++M  +G+ PD +TY  LI G+
Sbjct: 327 GFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGH 386

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ GN ++A  L  E + +G +  ++ Y  L+  L K  R+ EA  LF+      + PD 
Sbjct: 387 CQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDF 446

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           ++++ LI G C  G ++RA+ L ++M   +  P       ++ G  + G + EAR   D 
Sbjct: 447 IVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDT 506

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
             R  +  D + +N                            P+ +T+N LI G C+   
Sbjct: 507 WTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCR--R 564

Query: 278 GDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           GDL  A ++L  +  KG+ P   TY +L+     V    E
Sbjct: 565 GDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQE 604



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 167/337 (49%), Gaps = 31/337 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           +K  G      T    + G+C++ +LE+A   L     N +V P+ V+ NT++  +C  G
Sbjct: 228 IKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHD--SNKVVGPSIVSINTIMSKFCKVG 285

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +++A S    MVK G++  + +YN+L+H L +   M EA     +M + G+ PD +TYN
Sbjct: 286 LIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYN 345

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L  G+   G    A  +  +M+ +G+ P ++TYT+LI    +   + EA +L +  L++
Sbjct: 346 TLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSR 405

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G   +++ +N L+   C  G IE A +L  EM+ +++ PD + Y+ L+HG C++G V+ A
Sbjct: 406 GFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRA 465

Query: 240 RRLLDQMKRRGIKPDHISFNPTRL----------------------------TYNALIQG 271
            +L +QM+ +   P H +     L                             YN +I G
Sbjct: 466 YQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDG 525

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             +      A +L  +M+ +GITP   T+ +LI G  
Sbjct: 526 YVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFC 562



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++  V P   TY   + G+C++ ++ E+ ++LE M   GL+P +VTYNT+I  +C    
Sbjct: 612 MEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKE 671

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M+     PT  TY +LI+ L +   + + D M+  + ++ I     TY  
Sbjct: 672 ITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMT 731

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C  G   KA    ++M+ KG   ++  Y+++I  L K+  + EA   F   L++G
Sbjct: 732 IIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEG 791

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLL 208
           + PD  +   +++     GN    F  L
Sbjct: 792 VTPDPEICKTVLNAFHQQGNNSSVFEFL 819



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 139/307 (45%), Gaps = 11/307 (3%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K R    +   +        +   + +A  ++ +MK+     +  TYN+L+    N  + 
Sbjct: 162 KFRNWDSNGLVWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLH---NMRHT 218

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           ++ +   +E+   G   +  T ++LIH L  + K+ +A   L +   K + P  ++ N +
Sbjct: 219 DIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTI 277

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++ +C+ G    A S    M+  G+     +Y  L+  L     M EA    ++    G+
Sbjct: 278 MSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGV 337

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD+V +N L  G    G +  A  ++++M    ++PD VTY TL+ G C+ G +EEA +
Sbjct: 338 EPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALK 397

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L  +   RG K + I        YN L+  LCK    + A  L  EM +  + PD   Y 
Sbjct: 398 LRQETLSRGFKLNVI-------FYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYS 450

Query: 302 SLIEGIA 308
            LI G+ 
Sbjct: 451 ILIHGLC 457



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 34/77 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G       Y + ++ +CK G + EA      M   G+ P      T+++ +  +GN
Sbjct: 752 MLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGN 811

Query: 61  LEMAFSFRDEMVKQGIM 77
               F F   +VK G +
Sbjct: 812 NSSVFEFLAMVVKSGFI 828


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 169/339 (49%), Gaps = 42/339 (12%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S GV+P   T+ + ++ +CK+G+++EA  +  ++ +  L P A TY +LI G+C    L+
Sbjct: 190 SSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLD 249

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF   D MVK G  P + TY+ LI+ L  E ++ EA DML+EM EKGI P   TY + I
Sbjct: 250 KAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPI 309

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C  G    A +L   M  KG  P++ TYT++I  L +  +M  A  ++   L +G++
Sbjct: 310 SSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLV 369

Query: 183 PDIVMFNALIDGHCTNG-----------------------------------NIERAFSL 207
           P+ V +NALI+  CT G                                   +IE+A  +
Sbjct: 370 PNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVV 429

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
             +M +    P  VTYNTL+    ++G +  A R L  MK    +PD         TY  
Sbjct: 430 FNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPD-------ERTYCE 482

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LI G CK  + D A     EM+  GI+P+  TY ++I+G
Sbjct: 483 LISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDG 521



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 156/316 (49%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+S TY + ++G+C EGR+ EA  MLE+M E G+ PT  TY   I   C+ G 
Sbjct: 258 MVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGR 317

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    M K+G  P+  TY  +I  L    KM  A  M  +M ++G+VP+++TYN 
Sbjct: 318 VDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNA 377

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN  C  G    A  + D M   G      TY  +I  L   + + +A  +F   L  G
Sbjct: 378 LINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDG 437

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P +V +N LI  +   G +  A   L  M      PDE TY  L+ G C+ GK++ A 
Sbjct: 438 PSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSAT 497

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               +M + GI P+       + TY A+I G CK  + D+A  L   M   G +    TY
Sbjct: 498 SFFYEMLKCGISPN-------QWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETY 550

Query: 301 FSLIEGIASVDKAAES 316
            ++I G++  ++ +E+
Sbjct: 551 NAIISGLSKGNRFSEA 566



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 155/321 (48%), Gaps = 17/321 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P   TY + +SG+ + G++E A  M  +M + GLVP  VTYN LI+  C +G 
Sbjct: 328 MGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGR 387

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL----MERKMVEADDMLKEMGEKGIVPDSI 116
             +A    D M   G +  A TYN +I  L     +E+ MV  + MLK+    G  P  +
Sbjct: 388 FGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKD----GPSPTVV 443

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYN LI    + G    A      M     +P   TY  LI    K  ++  A   F   
Sbjct: 444 TYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEM 503

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           L  G+ P+   + A+IDG+C  G I+ A SL + M+         TYN ++ G  +  + 
Sbjct: 504 LKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRF 563

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA +   +M  +G++P+ I       TY +LI GLCKN   +LA ++  EM  K   P+
Sbjct: 564 SEAEKFCAKMTEQGLQPNTI-------TYTSLINGLCKNTATNLAFKIFHEMEKKNCLPN 616

Query: 297 DNTYFSLIEGIASVDK--AAE 315
            +TY SLI G+    K  AAE
Sbjct: 617 AHTYTSLIYGLCQEGKVDAAE 637



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 158/339 (46%), Gaps = 46/339 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P++ TY + ++ +C EGR   A ++ + M+ +G +  A TYN +I G     +
Sbjct: 363 MLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDD 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    ++M+K G  PT  TYN LI E L    +  A   L  M E    PD  TY  
Sbjct: 423 IEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCE 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT-------------------------- 154
           LI+G+C+ G    A S   EM+  GI P   TYT                          
Sbjct: 483 LISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENG 542

Query: 155 ---------SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                    ++I  LSK NR  EA++       +G+ P+ + + +LI+G C N     AF
Sbjct: 543 CSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAF 602

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +  EM++    P+  TY +L++G C++GKV+ A RL +               PT  TY
Sbjct: 603 KIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN-----------GCEPTIDTY 651

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           + L+ GLC+    + A +L+  M  KG++P    Y SL+
Sbjct: 652 STLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLL 690



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 158/344 (45%), Gaps = 38/344 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK    +PD  TY   +SG CK G+L+ A+    +M + G+ P   TY  +IDGYC +G 
Sbjct: 468 MKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGK 527

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A S  + M + G   +  TYN +I  L    +  EA+    +M E+G+ P++ITY  
Sbjct: 528 IDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTS 587

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-------------------------------GIQPT 149
           LING C+      AF +  EM  K                               G +PT
Sbjct: 588 LINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPT 647

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + TY++L+  L ++ R  EA QL EN   KG+ P + ++ +L+  HC +  ++ A  +  
Sbjct: 648 IDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFN 707

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M      P    Y  L+   C   + EEA  +   + ++        +N   + +  L+
Sbjct: 708 LMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKK-------QWNSDLIVWTVLV 760

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
            GL +  + DL  + L  M S+  TP  +TY  L   ++ V K+
Sbjct: 761 DGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGKS 804



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 120/231 (51%), Gaps = 7/231 (3%)

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
           T  ++N L+ +L     +  A ++  ++   G+ P  +T+N +IN  C+ G  ++A  + 
Sbjct: 161 TLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVF 220

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
           +++    + P   TYTSLI    +  ++ +A ++F+  +  G  P+ V ++ LI+G C  
Sbjct: 221 NKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNE 280

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
           G I  A  +L+EM    + P   TY   +   C  G+V++A  L+  M ++G        
Sbjct: 281 GRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGC------- 333

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           +P+  TY A+I GL +  + +LA  +  +M+ +G+ P+  TY +LI  + +
Sbjct: 334 SPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCT 384



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T+ ++ +L+  L K + +  A  ++    + G+ P ++ FN +I+  C  G ++ A  + 
Sbjct: 161 TLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVF 220

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            ++ +  + PD  TY +L+ G CR  K+++A  + D+M + G        NP  +TY+ L
Sbjct: 221 NKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGC-------NPNSVTYSTL 273

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           I GLC       A ++L EM  KGI P   TY   I  +  + +  ++ N
Sbjct: 274 INGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAIN 323



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 86/172 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +   G +P   TY + VSG+C+EGR  EAS+++E MKE GL P+   Y +L+  +C    
Sbjct: 639 LTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLK 698

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M  +G  P    Y +LI  L    +  EA ++ + + +K    D I + +
Sbjct: 699 VDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTV 758

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
           L++G  + G++         M  +   P++ TY  L   LSK  + I  DQ+
Sbjct: 759 LVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGKSIGTDQI 810


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 28/333 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TY +   G    G +  A +++++M   GL P  VTY TLI G+C  GN
Sbjct: 332 MEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGN 391

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A   R E + +G       YN+L+  L    ++ EA  +  EM    + PD I Y+I
Sbjct: 392 IEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSI 451

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G  ++A+ L+++M  K   P      +++  L K   + EA   F+ +    
Sbjct: 452 LIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMD 511

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ D+V++N +IDG+     I  A  L  +M    + P  VT+NTL++G CR+G + EAR
Sbjct: 512 LMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEAR 571

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           ++L+ ++ +G+ P  +++                             PT +TY  LI+GL
Sbjct: 572 KMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGL 631

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           C+  +   + +LL  M +KG+ PD  TY ++I+
Sbjct: 632 CRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQ 664



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 159/306 (51%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRG + +   Y   +S +CK GR+EEA  + ++M+   L P  + Y+ LI G C +G ++
Sbjct: 404 SRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQ 463

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+   ++M  +   P       ++  L     + EA +         ++ D + YNI+I
Sbjct: 464 RAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMI 523

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +GY R     +A  L+ +MI +GI P+++T+ +LI    ++  ++EA ++ E    KG++
Sbjct: 524 DGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLV 583

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P +V +  L++ +C  GN++  F  L EM+   V P  VTY  L+ G CRQ K+ E+ +L
Sbjct: 584 PSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQL 643

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L+ M  +G+ PD +       TYN +IQ  CK +E   A +L   M+     P   TY  
Sbjct: 644 LEYMYAKGLLPDSV-------TYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKV 696

Query: 303 LIEGIA 308
           LI  + 
Sbjct: 697 LINALC 702



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 168/366 (45%), Gaps = 77/366 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK-------------------ENG- 40
           M++  ++PD   Y   + G+CKEG ++ A ++ EQM+                   +NG 
Sbjct: 437 METLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGN 496

Query: 41  ---------------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                          L+   V YN +IDGY     +  A     +M+++GI P+  T+N 
Sbjct: 497 ISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNT 556

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+       ++EA  ML+ +  KG+VP  +TY  L+N YC  GN ++ F    EM    
Sbjct: 557 LINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANA 616

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + PT +TYT LI  L +QN+M E+ QL E   AKG+LPD V +N +I   C    I +A 
Sbjct: 617 VVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKAL 676

Query: 206 SL----------------------------LKEMDRMKVHPDE-------VTYNTLMHGR 230
            L                            LK++DRM V  ++       VTY T++   
Sbjct: 677 QLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAH 736

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C +G+V +A    +QM  +G       F  +   Y+A+I  LCK      A+     M+S
Sbjct: 737 CAKGQVSKALGYFNQMLAKG-------FVISIRDYSAVINRLCKRGLITEAKYFFVMMLS 789

Query: 291 KGITPD 296
           +G+TPD
Sbjct: 790 EGVTPD 795



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 168/337 (49%), Gaps = 31/337 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           +K  G      T    + G+C++ +LE+A   L     N +V P+ V+ NT++  +C  G
Sbjct: 228 IKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHD--SNKVVGPSIVSINTIMSKFCKVG 285

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +++A SF   MVK G++  + +YN+L+H L +   M EA     +M + G+ PD +TYN
Sbjct: 286 LIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYN 345

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L  G+   G    A  +  +M+ +G+ P ++TYT+LI    +   + EA +L +  L++
Sbjct: 346 TLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSR 405

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G   +++ +N L+   C  G IE A +L  EM+ +++ PD + Y+ L+HG C++G V+ A
Sbjct: 406 GFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRA 465

Query: 240 RRLLDQMKRRGIKPDHISFNPTRL----------------------------TYNALIQG 271
            +L +QM+ +   P H +     L                             YN +I G
Sbjct: 466 YQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDG 525

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             +      A +L  +M+ +GITP   T+ +LI G  
Sbjct: 526 YVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFC 562



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 160/340 (47%), Gaps = 32/340 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P   +  + +S  CK G ++ A      M +NGL+  + +YN L+ G C  G+++ A 
Sbjct: 267 VGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEAL 326

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F D+M K G+ P   TYN L    L+   M  A  ++++M  +G+ PD +TY  LI G+
Sbjct: 327 GFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGH 386

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+ GN ++A  L  E + +G +  ++ Y  L+  L K  R+ EA  LF+      + PD 
Sbjct: 387 CQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDF 446

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           ++++ LI G C  G ++RA+ L ++M   +  P       ++ G  + G + EAR   D 
Sbjct: 447 IVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDT 506

Query: 246 MKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQE 277
             R  +  D + +N                            P+ +T+N LI G C+   
Sbjct: 507 WTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCR--R 564

Query: 278 GDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           GDL  A ++L  +  KG+ P   TY +L+     V    E
Sbjct: 565 GDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQE 604



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 105/208 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++  V P   TY   + G+C++ ++ E+ ++LE M   GL+P +VTYNT+I  +C    
Sbjct: 612 MEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKE 671

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + M+     PT  TY +LI+ L +   + + D M+  + ++ I    +TY  
Sbjct: 672 ITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMT 731

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C  G   KA    ++M+ KG   ++  Y+++I  L K+  + EA   F   L++G
Sbjct: 732 IIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEG 791

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLL 208
           + PD  +   +++     GN    F  L
Sbjct: 792 VTPDPEICKTVLNAFHQQGNNSSVFEFL 819



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 139/307 (45%), Gaps = 11/307 (3%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K R    +   +        +   + +A  ++ +MK+     +  TYN+L+    N  + 
Sbjct: 162 KFRNWDSNGLVWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLH---NMRHT 218

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           ++ +   +E+   G   +  T ++LIH L  + K+ +A   L +   K + P  ++ N +
Sbjct: 219 DIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHD-SNKVVGPSIVSINTI 277

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++ +C+ G    A S    M+  G+     +Y  L+  L     M EA    ++    G+
Sbjct: 278 MSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGV 337

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PD+V +N L  G    G +  A  ++++M    ++PD VTY TL+ G C+ G +EEA +
Sbjct: 338 EPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALK 397

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           L  +   RG K + I        YN L+  LCK    + A  L  EM +  + PD   Y 
Sbjct: 398 LRQETLSRGFKLNVI-------FYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYS 450

Query: 302 SLIEGIA 308
            LI G+ 
Sbjct: 451 ILIHGLC 457



 Score = 37.7 bits (86), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 34/77 (44%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G       Y + ++ +CK G + EA      M   G+ P      T+++ +  +GN
Sbjct: 752 MLAKGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGN 811

Query: 61  LEMAFSFRDEMVKQGIM 77
               F F   +VK G +
Sbjct: 812 NSSVFEFLAMVVKSGFI 828


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 166/328 (50%), Gaps = 28/328 (8%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76
           V  +C+ G +  A  ++ +M   G+VPT  TYNTL++    + + E        M ++G+
Sbjct: 189 VDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVDEILGLMEREGV 248

Query: 77  MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136
           + +  TY +LI       ++ EA+ + +EM E+ +  D   Y  +I+  CR GN ++A +
Sbjct: 249 VASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASA 308

Query: 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196
           L DEMI +GI P   T+ +LI  + K  +M  A+ L E    KG+  ++V+FN ++DG+C
Sbjct: 309 LFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYC 368

Query: 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI 256
             G ++ AF L   M+R     D  TYN L  G C+  + EEA+R+L+ M  +G+ P+ +
Sbjct: 369 KRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVV 428

Query: 257 S----------------------------FNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           +                              P  +TYN LI    KN++   A  L  EM
Sbjct: 429 TCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEM 488

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAES 316
           V KG+ PD  TY SLI G   VDK  E+
Sbjct: 489 VEKGLLPDVFTYTSLIHGECIVDKVDEA 516



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 161/304 (52%), Gaps = 42/304 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ P++ T+G+ +SG+CK G++E A  +LE+M+  G+    V +NT++DGYC +G 
Sbjct: 313 MICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGM 372

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF  +D                     +MERK  EAD                TYNI
Sbjct: 373 MDEAFRLQD---------------------IMERKGFEAD--------------VFTYNI 397

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +G C+    ++A  + + M+ KG+ P ++T  + I +  ++  + E ++   N   +G
Sbjct: 398 LASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRG 457

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+IV +N LID +  N  +++A  L  EM    + PD  TY +L+HG C   KV+EA 
Sbjct: 458 VVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEAL 517

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L ++M  +GI+ +         TY A+I GL K    D A +L  EM+  G+ PDD  +
Sbjct: 518 KLFNEMLVKGIRGN-------VKTYTAIISGLSKEGRADEALKLYDEMMRMGLIPDDRVF 570

Query: 301 FSLI 304
            +L+
Sbjct: 571 EALV 574



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 162/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV     TY   +       R+ EA ++ E+M E  +      Y ++I   C  GN
Sbjct: 243 MEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGN 302

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  DEM+ +GI+P   T+  LI  +    +M  A+ +L+EM  KG+  + + +N 
Sbjct: 303 VRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNT 362

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++GYC+ G   +AF L D M  KG +  + TY  L   L K +R  EA ++    + KG
Sbjct: 363 MMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKG 422

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V     I+ +C  GN+      L+ +++  V P+ VTYNTL+    +  KV++A 
Sbjct: 423 VAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAH 482

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M  +G+ PD         TY +LI G C   + D A +L  EM+ KGI  +  TY
Sbjct: 483 XLKAEMVEKGLLPD-------VFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTY 535

Query: 301 FSLIEGIASVDKAAES 316
            ++I G++   +A E+
Sbjct: 536 TAIISGLSKEGRADEA 551



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 90/162 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV P+  T  +F+   C+EG L E  R L  +++ G+VP  VTYNTLID Y     
Sbjct: 418 MVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEK 477

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A   + EMV++G++P   TY  LIH   +  K+ EA  +  EM  KGI  +  TY  
Sbjct: 478 VKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTA 537

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
           +I+G  + G A +A  L+DEM+  G+ P    + +L+  L K
Sbjct: 538 IISGLSKEGRADEALKLYDEMMRMGLIPDDRVFEALVGSLHK 579


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+QPD   Y S + G+C  GR +EA+ +L  M   G++P   T+N L+D +C  G 
Sbjct: 238 MTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGM 297

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +    MV  G+ P   TYN +I    +  +M +A  + + M  KG +P+ +TY+ 
Sbjct: 298 ISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSS 357

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+  N  KA  L  EM++ G+ P ++T+++LI    K  +   A +LF       
Sbjct: 358 LIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHD 417

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++     ++DG         A SL +EM++M +  + V YN ++ G C  GK+ +A+
Sbjct: 418 QHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQ 477

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +GIK D ++       Y  +I+GLCK    D AE LL +M   G  P++ TY
Sbjct: 478 ELFSCLPSKGIKIDVVA-------YTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTY 530

Query: 301 FSLIEGI 307
              + G+
Sbjct: 531 NVFVRGL 537



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 174/337 (51%), Gaps = 29/337 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK-ENGLVPTAVTYNTLIDGYCNKG 59
           ++  G Q +SYTYG+ ++G+CK G    A   LE++K  N  +   + Y+T++D  C  G
Sbjct: 167 LEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDG 226

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  A +    M  +GI P    YN LIH L    +  EA  +L  M  KGI+P+  T+N
Sbjct: 227 MVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFN 286

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +L++ +C+ G   +A ++   M+H G++P ++TY S+I      ++M +A ++FE  + K
Sbjct: 287 VLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHK 346

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G LP++V +++LI G C   NI +A  LL EM    ++PD VT++TL+ G C+ GK E A
Sbjct: 347 GFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAA 406

Query: 240 RRLLDQMKRRGIKP----------------------------DHISFNPTRLTYNALIQG 271
           + L   M      P                            + ++     + YN ++ G
Sbjct: 407 KELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDG 466

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +C   + + A+EL   + SKGI  D   Y ++I+G+ 
Sbjct: 467 MCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLC 503



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 161/311 (51%), Gaps = 8/311 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G++PD YT    ++ +C          +L  M + G+ PT VT+ TLI+G C +GN+ 
Sbjct: 99  SLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVA 158

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD-SITYNIL 121
            A  F D +   G    + TY  +I+ L        A   L+++  +    D  I Y+ +
Sbjct: 159 RAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTI 218

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++  C+ G   +A +L   M  KGIQP ++ Y SLI  L    R  EA  L  N + KG+
Sbjct: 219 MDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGI 278

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P++  FN L+D  C +G I RA +++  M  + V PD VTYN+++ G C   ++ +A +
Sbjct: 279 MPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVK 338

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           + + M  +G       F P  +TY++LI G CK +  + A  LL EMV+ G+ PD  T+ 
Sbjct: 339 VFELMIHKG-------FLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWS 391

Query: 302 SLIEGIASVDK 312
           +LI G     K
Sbjct: 392 TLIGGFCKAGK 402



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 8/245 (3%)

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           E A SF  +MV    +P    +  L   ++  +       ++K +   GI PD  T  I+
Sbjct: 53  EAALSFFHKMVVMNPLPREKDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTLTII 112

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           IN  C   +    FS+   M   G+ PT++T+ +LI  L  +  +  A +  ++    G 
Sbjct: 113 INCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGH 172

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV-TYNTLMHGRCRQGKVEEAR 240
             +   + A+I+G C  G+   A   L+++       D V  Y+T+M   C+ G V EA 
Sbjct: 173 QSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEAL 232

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M  +GI+PD ++       YN+LI GLC       A  LL  M+ KGI P+  T+
Sbjct: 233 NLFSGMTSKGIQPDLVA-------YNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTF 285

Query: 301 FSLIE 305
             L++
Sbjct: 286 NVLVD 290



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   ++ +   Y   + GMC  G+L +A  +   +   G+    V Y T+I G C +G 
Sbjct: 448 MEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGL 507

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +   +M + G +P   TYN+ +  LL    +  +   L  M  KG+  D+ T  +
Sbjct: 508 LDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSADATTTEL 567

Query: 121 LINGY 125
           LI+ +
Sbjct: 568 LISYF 572


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 7/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P    Y + + GMCKEGR+E A ++L +M +NG+ P  V+Y+ +I+  C  GN+E+AF+
Sbjct: 241 KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFA 300

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M  +G      T+  LI    M  K+ EA D+ K M + G  P+ + YN LI+G C
Sbjct: 301 LFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC 360

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G+ ++A  + D+M   G  P + TY+ LI   +K   ++ A + +   ++ G  P++V
Sbjct: 361 SNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  ++D  C N   ++A SL+++M      P+ +T+NT + G C  G+VE A +LL++M
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +  G  P+         TYN L+  L +  + + A  L +E+ ++ + P+  TY +++ G
Sbjct: 481 QGHGCLPNIT-------TYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG 533

Query: 307 IASVDKAAES 316
            +      E+
Sbjct: 534 FSRAGMMGEA 543



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 159/304 (52%), Gaps = 6/304 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+   Y + + G+C  G LEEA ++ +QM+ +G +P   TY+ LIDG+   G+
Sbjct: 340 MIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD 399

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    + M+  G  P   TY  ++  L       +A+ ++++M  +G  P++IT+N 
Sbjct: 400 LVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNT 459

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G C  G  + A  L + M   G  P + TY  L+  L + N+  EA  LF+   A+ 
Sbjct: 460 FIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARN 519

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N ++ G    G +  A  L  +       PD +TYNT++H  C+QGKV+ A 
Sbjct: 520 LQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAA 579

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L++++    +K  H    P  +TY +LI G C     + A   L + +++GI P+  T+
Sbjct: 580 QLVERVS--SMKEWH----PDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATW 633

Query: 301 FSLI 304
            +L+
Sbjct: 634 NALV 637



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 158/366 (43%), Gaps = 58/366 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+      +   ++G  + G  E+A +M  ++ E G  PT   YN L+D   ++  
Sbjct: 100 MKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENK 159

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--- 117
            +M       M K G++P   TYN+L+  L    ++  A  +  EM  KG  PD++T   
Sbjct: 160 FQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTT 219

Query: 118 ---------------------------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
                                      YN LI+G C+ G  + A  L  EM+  G+ P +
Sbjct: 220 MVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNV 279

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++Y+ +I  L     +  A  LF     +G   +I  F  LI G    G +  A  L K 
Sbjct: 280 VSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKL 339

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------- 259
           M +    P+ V YNTL+HG C  G +EEA ++ DQM+R G  P+  +++           
Sbjct: 340 MIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD 399

Query: 260 -----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
                            P  +TY  ++  LCKN   D A  L+ +M  +G TP+  T+ +
Sbjct: 400 LVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNT 459

Query: 303 LIEGIA 308
            I+G+ 
Sbjct: 460 FIKGLC 465



 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 152/334 (45%), Gaps = 33/334 (9%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S   Q  + TY   +  + +E  ++    +L+QMK +G+      +  +I+GY   G+ E
Sbjct: 67  SNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAE 126

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      + + G  PT   YN L+  LL E K    + +   M + G++P+  TYNIL+
Sbjct: 127 QALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILL 186

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
              C+      A  L  EM +KG  P  +TYT+++  L K  ++ +A +L   F      
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRF-----K 241

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P + ++NALIDG C  G IE A  LL EM    V P+ V+Y+ +++  C  G VE A  L
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
             QM  RG   +  +F                             P  + YN LI GLC 
Sbjct: 302 FAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCS 361

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           N   + A ++  +M   G  P+  TY  LI+G A
Sbjct: 362 NGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA 395



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
             Q T  TY  +I  L ++  M     + +     G+     +F  +I+G+   G+ E+A
Sbjct: 69  AFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQA 128

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +   +      P    YN L+     + K +    L   MK+ G+ P+         T
Sbjct: 129 LKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPN-------VFT 181

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           YN L++ LCKN   D A +L  EM +KG  PD  TY +++  +    K
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGK 229


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K+  + P   TY + + G+C+ G LE A R+ E+M    + P  +TY TL+ G+   GN
Sbjct: 436 LKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGN 495

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYN 119
           L MA    DEM+++GI P    Y       L      +A  + +EM  E    PD   YN
Sbjct: 496 LSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYN 555

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           + I+G C+ GN +KA     ++   G+ P  +TYT++I    ++ R   A  L++  L+K
Sbjct: 556 VRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSK 615

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + P ++ +  LI GH   G +E+AF    EM +  V P+ +T+N L+HG C+ G ++EA
Sbjct: 616 RLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEA 675

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            R L +M+  GI P+       + +Y  LI   C   + +   +L +EM+ K I PD  T
Sbjct: 676 YRYLCKMEEEGISPN-------KYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYT 728

Query: 300 YFSLIEGI 307
           + +L + +
Sbjct: 729 HRALFKHL 736



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 169/348 (48%), Gaps = 39/348 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK R ++    TY   ++G  K G++EEA R    M+ +G   T  ++N LI+GYC +G 
Sbjct: 300 MKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGL 359

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNL-------------------------------LIHE 89
            + A+   DEM+  GI PT STYN+                               L+H 
Sbjct: 360 FDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAPDVVSYNTLMHG 419

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
            +  RK VEA  +  ++    I P  +TYN LI+G C  GN + A  L +EM  + I P 
Sbjct: 420 YIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPD 479

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           ++TYT+L+    K   +  A ++++  L KG+ PD   +     G    G+ E+AF L +
Sbjct: 480 VITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHE 539

Query: 210 EMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           EM     H PD   YN  + G C+ G +E+A     ++ R G+ PDH+       TY  +
Sbjct: 540 EMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHV-------TYTTV 592

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           I+G  +     +A +L  EM+SK ++P   TYF LI G A   +  ++
Sbjct: 593 IRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQA 640



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 8/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + + G  K  +  EAS + + +K   + P+ VTYNTLIDG C  GNLE A   
Sbjct: 408 PDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRL 467

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           ++EM  Q I P   TY  L+   +    +  A ++  EM  KGI PD   Y     G  R
Sbjct: 468 KEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELR 527

Query: 128 CGNAKKAFSLHDEMIHKGIQ-PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
            G+++KAF LH+EM+ +    P +  Y   I  L K   + +A +        G++PD V
Sbjct: 528 LGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHV 587

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  +I G+   G  + A  L  EM   ++ P  +TY  L+HG  + G++E+A +   +M
Sbjct: 588 TYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEM 647

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           K+RG++P+        +T+NAL+ G+CK    D A   L +M  +GI+P+  +Y  LI  
Sbjct: 648 KKRGVRPN-------VMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISK 700

Query: 307 IASVDKAAE 315
              +DK  E
Sbjct: 701 HCDLDKWEE 709



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 155/335 (46%), Gaps = 33/335 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   T+ + +    K G LE   ++  +MK   +  + VTYN LI+G+   G 
Sbjct: 265 MVMHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGK 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F  +M + G   T  ++N LI     +    EA  +  EM   GI P + TYNI
Sbjct: 325 MEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNI 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C  G    A     E++     P +++Y +L+    K  + +EA  LF++  A  
Sbjct: 385 YIRALCEFGRIDDA----RELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGN 440

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV +N LIDG C +GN+E A  L +EM    ++PD +TY TL+ G  + G +  A 
Sbjct: 441 INPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMAT 500

Query: 241 RLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNALIQG 271
            + D+M R+GIKPD  ++                              P    YN  I G
Sbjct: 501 EIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDG 560

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           LCK    + A E  R++   G+ PD  TY ++I G
Sbjct: 561 LCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRG 595



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 130/276 (47%), Gaps = 11/276 (3%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
            E+M   G +P+    N ++    +   +  A    + MV  GIMPT  T+N ++     
Sbjct: 227 FEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFK 286

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
              +   D +  EM  + I    +TYNILING+ + G  ++A   H +M   G   T  +
Sbjct: 287 AGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYS 346

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           +  LI    KQ    EA  + +  L  G+ P    +N  I   C  G I+ A  LL  M 
Sbjct: 347 FNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSM- 405

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
                PD V+YNTLMHG  +  K  EA  L D +K   I       NP+ +TYN LI GL
Sbjct: 406 ---AAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNI-------NPSIVTYNTLIDGL 455

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           C++   + A+ L  EM S+ I PD  TY +L++G  
Sbjct: 456 CESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFV 491



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 89/166 (53%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  TY + + G  ++GR + A  + ++M    L P+ +TY  LI G+   G LE A
Sbjct: 581 GLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQA 640

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F +  EM K+G+ P   T+N L+H +     + EA   L +M E+GI P+  +Y ILI+ 
Sbjct: 641 FQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISK 700

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           +C     ++   L+ EM+ K I+P   T+ +L   L K +  +  D
Sbjct: 701 HCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKDHESMALD 746



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 10/194 (5%)

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y +   A+K     ++MI KG  P++     ++ VL     M +A +++E  +  G++P 
Sbjct: 214 YTKKSMAEKCLLSFEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPT 273

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ FN ++D     G++ER   +  EM R  +   EVTYN L++G  + GK+EEARR   
Sbjct: 274 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHG 333

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M+R G      SFNP       LI+G CK    D A  +  EM++ GI P  +TY   I
Sbjct: 334 DMQRSGFPVTPYSFNP-------LIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYI 386

Query: 305 EGI---ASVDKAAE 315
             +     +D A E
Sbjct: 387 RALCEFGRIDDARE 400


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  181 bits (458), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 166/312 (53%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QPD  TYG+ V+G+CK G  + A  +L +M+   +    V Y+T+ID  C   +
Sbjct: 209 MVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRH 268

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   EM  +G+ P   TY+ LI  L    +  +A  +L +M E+ I P+ +T++ 
Sbjct: 269 EDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSA 328

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ + + G   KA  L++EMI + I P + TY+SLI      +R+ EA Q+ E  + K 
Sbjct: 329 LIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKD 388

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LP++V +N LI+G C    +++   L +EM +  +  + VTY TL+HG  +    + A+
Sbjct: 389 CLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 448

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  QM   G+ P+        LTYN L+ GLCKN +   A  +   +    + PD  TY
Sbjct: 449 MVFKQMVSVGVHPNI-------LTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 501

Query: 301 FSLIEGIASVDK 312
             +IEG+    K
Sbjct: 502 NIMIEGMCKAGK 513



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 175/316 (55%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD+ T+ + + G+    +  EA  ++++M + G  P  VTY  +++G C +G+
Sbjct: 174 MVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGD 233

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A +  ++M    I      Y+ +I  L   R   +A ++  EM  KG+ P+ ITY+ 
Sbjct: 234 TDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 293

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C  G    A  L  +MI + I P ++T+++LI    K+ ++++A++L+E  + + 
Sbjct: 294 LISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRS 353

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I  +++LI+G C    +  A  +L+ M R    P+ VTYNTL++G C+  +V++  
Sbjct: 354 IDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGM 413

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RG+  + +       TY  LI G  + ++ D A+ + ++MVS G+ P+  TY
Sbjct: 414 ELFREMSQRGLVGNTV-------TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 466

Query: 301 FSLIEGIASVDKAAES 316
             L++G+    K A++
Sbjct: 467 NILLDGLCKNGKLAKA 482



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 172/342 (50%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  + YTY   ++  C+  RL  A  +L +M + G  P  VT N+L++G+C+   
Sbjct: 104 MEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNR 163

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+MV+ G  P   T+  LIH L +  K  EA  ++  M ++G  PD +TY  
Sbjct: 164 ISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGA 223

Query: 121 LINGYCRCGNA-----------------------------------KKAFSLHDEMIHKG 145
           ++NG C+ G+                                      A +L  EM +KG
Sbjct: 224 VVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 283

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P ++TY+SLI  L    R  +A +L  + + + + P++V F+ALID     G + +A 
Sbjct: 284 VRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAE 343

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L +EM +  + P+  TY++L++G C   ++ EA+++L+ M R+   P+ +       TY
Sbjct: 344 KLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVV-------TY 396

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           N LI G CK +  D   EL REM  +G+  +  TY +LI G 
Sbjct: 397 NTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 164/335 (48%), Gaps = 28/335 (8%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           SY Y   +     +  L++A  +   M ++   P+ + ++ L+         ++  SF +
Sbjct: 43  SYDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGE 102

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           +M   GI     TYN+LI+      ++  A  +L +M + G  PD +T N L+NG+C   
Sbjct: 103 KMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGN 162

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
               A +L D+M+  G +P  +T+T+LI  L   N+  EA  L +  + +G  PD+V + 
Sbjct: 163 RISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYG 222

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           A+++G C  G+ + A +LL +M+  K+  + V Y+T++   C+    ++A  L  +M+ +
Sbjct: 223 AVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 282

Query: 250 GIKPDHISF----------------------------NPTRLTYNALIQGLCKNQEGDLA 281
           G++P+ I++                            NP  +T++ALI    K  +   A
Sbjct: 283 GVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKA 342

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           E+L  EM+ + I P+  TY SLI G   +D+  E+
Sbjct: 343 EKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEA 377



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 9/252 (3%)

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           N     ++FSF       G   T+  Y  ++   L + ++ +A  +   M +    P  I
Sbjct: 22  NAATFPLSFSFCRRRAFSG--KTSYDYREVLRTGLSDIELDDAIGLFGVMAQSRPFPSII 79

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            ++ L++   +        S  ++M   GI   + TY  LI    + +R+  A  L    
Sbjct: 80  EFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKM 139

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           +  G  PDIV  N+L++G C    I  A +L+ +M  M   PD VT+ TL+HG     K 
Sbjct: 140 MKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKA 199

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA  L+D+M +RG +PD +       TY A++ GLCK  + DLA  LL +M +  I  +
Sbjct: 200 SEAVALIDRMVQRGCQPDLV-------TYGAVVNGLCKRGDTDLALNLLNKMEAAKIEAN 252

Query: 297 DNTYFSLIEGIA 308
              Y ++I+ + 
Sbjct: 253 VVIYSTVIDSLC 264



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 35/167 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + P+ +TY S ++G C   RL EA +MLE M     +P  VTYNTLI+G+C    
Sbjct: 349 MIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKR 408

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM ++G++    TY  LIH     R    A  + K+M   G+ P+ +TYNI
Sbjct: 409 VDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 468

Query: 121 L-----------------------------------INGYCRCGNAK 132
           L                                   I G C+ G  K
Sbjct: 469 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWK 515



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S GV P+  TY   + G+CK G+L +A  + E ++ + + P   TYN +I+G C  G 
Sbjct: 454 MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513

Query: 61  LEMA 64
            +M 
Sbjct: 514 WKMG 517


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 162/294 (55%), Gaps = 7/294 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+ YT+   V  +CK+ + ++A  +L  M + G+ P  VTY  ++DGYC    
Sbjct: 173 MIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQ 232

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  + MV++G+ P    YN++I+ L  ++++ EA ++ KEM  K I PD +TYNI
Sbjct: 233 VNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNI 292

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    +  L DEM   G    ++TY SL+  L K + + +A  L +    +G
Sbjct: 293 LIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQG 352

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  +  LIDG C +G +E A+ + +E+     H    TYN +++G C++G  +EA 
Sbjct: 353 IQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEAL 412

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            LL +M+     PD +S       Y  +I  L +  E     +LL  M+ +G++
Sbjct: 413 ALLSRMEDNACIPDAVS-------YETIIYALSEKGETVKTNKLLCAMIVRGLS 459



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 167/306 (54%), Gaps = 10/306 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           + G + D  +Y   ++G+CK G    A +ML +   N  V   V Y+T+ID  C    + 
Sbjct: 108 AHGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNADV---VMYSTIIDSLCKGKFVT 164

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+    EM+ +GI P   T+++L+  L  +RK  +A ++L  M +KG+ P+ +TY  ++
Sbjct: 165 DAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIM 224

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +GYC      KA ++ + M+ +G++P +  Y  +I  L K+ R+ EA  LF+    K + 
Sbjct: 225 DGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKIN 284

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+V +N LIDG C  G I  +  L+ EM  +    D +TYN+L+H  C+   +++A  L
Sbjct: 285 PDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITL 344

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           + ++K +GI+P+         TY  LI GLCK+   + A  + +E++++G      TY  
Sbjct: 345 VKEIKDQGIQPN-------VCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNV 397

Query: 303 LIEGIA 308
           +I G+ 
Sbjct: 398 MINGLC 403



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 169/336 (50%), Gaps = 39/336 (11%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P   T    ++  C  G +     +L ++ + G  P ++T+ TLI G C  G    A
Sbjct: 40  GIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEA 99

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHEL-----------LMERKMVEADDML---------- 103
             F D +V  G      +Y +L++ L           ++ +  V AD ++          
Sbjct: 100 LLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCK 159

Query: 104 -----------KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
                       EM  KGI P+  T++IL++  C+    K+A +L   M+ KG++P ++T
Sbjct: 160 GKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVT 219

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           Y +++      N++ +A  +F   + +G+ P++  +N +I+G C    ++ A +L KEM 
Sbjct: 220 YGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMH 279

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
             K++PD VTYN L+ G C+ GK+  +  L+D+M+  G   D I       TYN+L+  L
Sbjct: 280 WKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDII-------TYNSLLHAL 332

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           CKN   D A  L++E+  +GI P+  TY +LI+G+ 
Sbjct: 333 CKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLC 368



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 157/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   V  D   Y + +  +CK   + +A R+  +M   G+ P   T++ L+D  C    
Sbjct: 138 LRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRK 197

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +    M+K+G+ P   TY  ++    +  ++ +A ++   M ++G+ P+   YNI
Sbjct: 198 GKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNI 257

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     +A +L  EM  K I P ++TY  LI  L K  ++  + +L +   + G
Sbjct: 258 IINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIG 317

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              DI+ +N+L+   C N ++++A +L+KE+    + P+  TY TL+ G C+ G++E+A 
Sbjct: 318 KTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAY 377

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  ++   G       ++ T  TYN +I GLCK    D A  LL  M      PD  +Y
Sbjct: 378 VIFQEILTEG-------YHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSY 430

Query: 301 FSLIEGIA 308
            ++I  ++
Sbjct: 431 ETIIYALS 438



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 45/311 (14%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   ++ + K      A  +  Q++ NG+ P+ VT   L++ YC+ G +   FS 
Sbjct: 8   PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSI 67

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G            +E                       P+SIT+  LI G C 
Sbjct: 68  LTKILKMG------------YE-----------------------PNSITFTTLIKGMCL 92

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G A +A   HD ++  G +   ++Y  L+  L K      A Q+           D+VM
Sbjct: 93  NGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNA---DVVM 149

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ +ID  C    +  A+ L  EM    + P+  T++ L+   C+  K ++A  LL  M 
Sbjct: 150 YSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMM 209

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           ++G+KP+ +       TY A++ G C   + + A  +   MV +G+ P+   Y  +I G+
Sbjct: 210 KKGVKPNVV-------TYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGL 262

Query: 308 ASVDKAAESSN 318
               +  E+ N
Sbjct: 263 CKKKRVDEAMN 273



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 124/248 (50%), Gaps = 10/248 (4%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M++    P    +N ++  L+       A  + +++   GI P  +T  IL+N YC  G 
Sbjct: 1   MLQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGG 60

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
               FS+  +++  G +P  +T+T+LI  +    +  EA    ++ +A G   D V +  
Sbjct: 61  ITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAI 120

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           L++G C  G    A  +L+   +  V+ D V Y+T++   C+   V +A RL  +M  +G
Sbjct: 121 LMNGLCKMGETRAAMQMLR---KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKG 177

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           I P+         T++ L+  LCK+++G  A  LL  M+ KG+ P+  TY ++++G   V
Sbjct: 178 IFPN-------VYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLV 230

Query: 311 DKAAESSN 318
           ++  ++ N
Sbjct: 231 NQVNKALN 238


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 158/316 (50%), Gaps = 5/316 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V PD  +Y + ++G+CK  +L+EA  +L +M+  G  P +VT  TL+DG C  G 
Sbjct: 24  MGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGR 83

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M K+G       Y  LI        +    ++  EM  KGI  + +TY+ 
Sbjct: 84  MDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSC 143

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G CR G  K+A ++ + M   GI P ++TYT LI  L K  R   A  L    + KG
Sbjct: 144 LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 203

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  V +N L+ G C  G +  AF +L+ M       D VTYNTLM G C +GKV+EA 
Sbjct: 204 EEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEAL 263

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L + M       +     P   T+N LI GLCK      A ++ R+MV KG   +  TY
Sbjct: 264 KLFNSM-----FDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 318

Query: 301 FSLIEGIASVDKAAES 316
             L+ G     K  E+
Sbjct: 319 NMLLGGCLKAGKIKEA 334



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 168/348 (48%), Gaps = 30/348 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY   + G+CK+GR   A  +L  M E G  P+ VTYN L+ G C +G 
Sbjct: 164 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 223

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSITY 118
           +  AF     M+++G      TYN L+  L  + K+ EA  +   M   E  + P+  T+
Sbjct: 224 VIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF 283

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N+LI G C+ G   KA  +H +M+ KG    ++TY  L+    K  ++ EA +L++  L 
Sbjct: 284 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLD 343

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G +P+   ++ LIDG C    +  A  L  EM    ++P    YNTLM   C++G +E+
Sbjct: 344 LGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQ 403

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           A+ L  +M     +PD ISFN                            P  LT++ LI 
Sbjct: 404 AKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN 463

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L K  E D A+  L  MV+ G TPD   Y SL++G++S     E  N
Sbjct: 464 RLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 511



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 162/300 (54%), Gaps = 13/300 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M  +G + D  TY + + G+C +G+++EA ++   M   EN L P   T+N LI G C +
Sbjct: 234 MIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 293

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L  A     +MVK+G      TYN+L+   L   K+ EA ++ K++ + G VP+S TY
Sbjct: 294 GRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTY 353

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +ILI+G+C+      A  L  EM   G+ P +  Y +L+  L K+  + +A  LF+    
Sbjct: 354 SILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 413

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
               PDI+ FN +IDG    G+ +    L  +M  M + PD +T++TL++   + G+++E
Sbjct: 414 ANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDE 473

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPD 296
           A+  L++M   G  PD        L Y++L++GL  + +GD  E   LL +M +KG   D
Sbjct: 474 AKSALERMVASGFTPD-------ALVYDSLLKGL--SSKGDTTEIINLLHQMAAKGTVLD 524



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N+++  L     + EA  +++EMG K + PD ++YN LING C+    K+A  L  EM  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P  +T T+L+  L K  RM EA +L E    KG   D+V++  LI G C NGN++R
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              L  EM    +  + VTY+ L+HG CR G+ +EA  +L+ M   GI PD +       
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVV------- 174

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           TY  LI GLCK+     A +LL  MV KG  P + TY  L+ G+ 
Sbjct: 175 TYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLC 219



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 10/274 (3%)

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           N ++ G C  G +  A     EM ++ + P   +YN LI+ L   +K+ EA  +L EM  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
            G  P+S+T   L++G C+ G   +A  L + M  KG    ++ Y +LI        +  
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
             +LF+  L KG+  ++V ++ L+ G C  G  + A ++L  M    +HPD VTY  L+ 
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           G C+ G+   A  LL+ M  +G +P ++       TYN L+ GLCK      A ++LR M
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEEPSNV-------TYNVLLSGLCKEGLVIDAFKILRMM 234

Query: 289 VSKGITPDDNTYFSLIEGI---ASVDKAAESSNS 319
           + KG   D  TY +L++G+     VD+A +  NS
Sbjct: 235 IEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNS 268



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 118/233 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   +  TY   + G  K G+++EA  + +Q+ + G VP + TY+ LIDG+C    
Sbjct: 306 MVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRM 365

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A     EM   G+ P    YN L+  L  E  + +A  + +EMG     PD I++N 
Sbjct: 366 LNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNT 425

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G+ +    L  +M+  G++P  LT+++LI  LSK   + EA    E  +A G
Sbjct: 426 MIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 485

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
             PD +++++L+ G  + G+     +LL +M       D    +T++   C  
Sbjct: 486 FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHS 538



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 90/177 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P  + Y + ++ +CKEG LE+A  + ++M      P  +++NT+IDG    G+
Sbjct: 376 MRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGD 435

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +     + +MV+ G+ P A T++ LI+ L    ++ EA   L+ M   G  PD++ Y+ 
Sbjct: 436 FQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDS 495

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           L+ G    G+  +  +L  +M  KG        ++++  L    + ++  +L   F 
Sbjct: 496 LLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFF 552


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 162/307 (52%), Gaps = 9/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
           G  PD ++Y   +  +C +G+  +A  +L  M E G V  P  V YNT+IDG+  +G++ 
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 236

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EMV++GI P   TYN ++H L   R M +A+  L++M  K ++P++ TYN LI
Sbjct: 237 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 296

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            GY   G  K+A  +  EM    I P ++T + L+  L K  ++ EA  +F+    KG  
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +N +++G+ T G +     L   M    + PD  T+N L+      G +++A  +
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 416

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++M+  G+KPD +       TY  +I  LC+  + D A E   +M+ +G+ PD   Y  
Sbjct: 417 FNEMRDHGVKPDVV-------TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 469

Query: 303 LIEGIAS 309
           LI+G  +
Sbjct: 470 LIQGFCT 476



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ V P+++TY + + G    G+ +EA R+ ++M+ + ++P  VT + L+   C  G 
Sbjct: 280 MVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 339

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M  +G  P   +YN++++    +  +V+  D+   M   GI PD  T+N+
Sbjct: 340 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNV 399

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y  CG   KA  + +EM   G++P ++TY ++I  L +  +M +A + F   + +G
Sbjct: 400 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 459

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE--------------------------MDRM 214
           + PD   +N LI G CT+G++ +A  L+ E                          MD  
Sbjct: 460 VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 519

Query: 215 KV---------HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +         HPD V Y+ LM G C  GK+E+A R+ D M   GI+P+ +        Y
Sbjct: 520 NIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV-------VY 572

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             L+ G CK    D    L REM+ +GI P    Y  +I+G+
Sbjct: 573 CTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 614



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD ++Y   ++G   +G L + + + + M  +G+ P   T+N LI  Y N G 
Sbjct: 350 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGM 409

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM   G+ P   TY  +I  L    KM +A +   +M ++G+ PD   YN 
Sbjct: 410 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 469

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  E+++ G+   ++ ++S+I  L K  R+++A  +F+  +  G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V+++ L+DG+C  G +E+A  +   M    + P+ V Y TL++G C+ G+++E  
Sbjct: 530 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 589

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RGIKP  I        Y+ +I GL +      A+    EM   GI  D  TY
Sbjct: 590 SLFREMLQRGIKPSTI-------LYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTY 642

Query: 301 FSLIEGI 307
             ++ G+
Sbjct: 643 NIVLRGL 649



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD Y Y   + G C  G L +A  ++ ++  NG+    V ++++I+  C  G 
Sbjct: 455 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D  V  G+ P A  Y++L+    +  KM +A  +   M   GI P+ + Y  
Sbjct: 515 VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCT 574

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ G   +  SL  EM+ +GI+P+ + Y+ +I  L +  R + A   F      G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESG 634

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI  +N ++ G   N   + A  L KE+  M V  + +T NT++ G  +  +VEEA+
Sbjct: 635 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK 694

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L   + R  + P  +       TY+ +I  L K    + AE++   M + G  P+
Sbjct: 695 DLFASISRSRLVPSVV-------TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 743



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 153/307 (49%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TY + ++ +C+ G++++A     QM + G+ P    YN LI G+C  G+
Sbjct: 420 MRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGS 479

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     E++  G+      ++ +I+ L    ++++A ++       G+ PD++ Y++
Sbjct: 480 LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSM 539

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  +KA  + D M+  GI+P ++ Y +L+    K  R+ E   LF   L +G
Sbjct: 540 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRG 599

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  ++++ +IDG    G    A     EM    +  D  TYN ++ G  +    +EA 
Sbjct: 600 IKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAI 659

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++   +K + I       T N +I G+ + +  + A++L   +    + P   TY
Sbjct: 660 FLFKELRAMNVKINII-------TLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTY 712

Query: 301 FSLIEGI 307
             +I  +
Sbjct: 713 SIMITNL 719



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 142/338 (42%), Gaps = 66/338 (19%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           L PT+ TY  L+D        E+A +F  ++++ G+       N L+      ++  EA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 100 DDMLKEMGEKGIVPDSITYNIL-------------------------------------I 122
           D +L    E G VPD  +Y+IL                                     I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 226

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + G+  KA  L  EM+ +GI P ++TY S++  L K   M +A+      + K +L
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 286

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+   +N LI G+ + G  + A  + KEM R  + PD VT + LM   C+ GK++EAR +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 346

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D M  +G  PD  S+N                            P   T+N LI+    
Sbjct: 347 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 406

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               D A  +  EM   G+ PD  TY ++I  +  + K
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 444



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 122/253 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+  Y   + G C  G++E+A R+ + M   G+ P  V Y TL++GYC  G ++  
Sbjct: 529 GLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG 588

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM+++GI P+   Y+++I  L    + V A     EM E GI  D  TYNI++ G
Sbjct: 589 LSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRG 648

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +     +A  L  E+    ++  ++T  ++I  + +  R+ EA  LF +     ++P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPS 708

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ +I      G +E A  +   M      P+    N ++    ++ ++  A   L 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 245 QMKRRGIKPDHIS 257
           ++  R    +H++
Sbjct: 769 KIDERNFSLEHLT 781



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 124/267 (46%), Gaps = 16/267 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   Y + V+G CK GR++E   +  +M + G+ P+ + Y+ +IDG    G 
Sbjct: 560 MVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGR 619

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM + GI     TYN+++  L   R   EA  + KE+    +  + IT N 
Sbjct: 620 TVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  +    ++A  L   +    + P+++TY+ +I  L K+  + EA+ +F +    G
Sbjct: 680 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+  + N ++        I RA + L ++D      + +T  T++             
Sbjct: 740 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLT--TML------------- 784

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNA 267
            L+D    +G   +HI F P +  + A
Sbjct: 785 -LVDLFSSKGTCREHIRFLPAKYHFLA 810



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 103/233 (44%), Gaps = 23/233 (9%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILI--------NGYCRCGNAKKAFSLHDEMIHKG---- 145
           EA D+L E+  +G        N  +        +  CR G A  A +L +    +     
Sbjct: 47  EAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPAL-AVALFNRAASRAQGPR 105

Query: 146 -IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + PT  TY  L+   ++ +R   A   F   L  G+  +I++ N L++G C     + A
Sbjct: 106 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA 165

Query: 205 FS-LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              LL     +   PD  +Y+ L+   C QGK  +A  LL  M   G        +P  +
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-----VCSPNVV 220

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
            YN +I G  K  + + A +L +EMV +GI PD  TY S++  +    ++DKA
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 273


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 162/312 (51%), Gaps = 6/312 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY + ++G C+ GRL+ A  ++ ++   GL P  + Y+TLI   C  G 
Sbjct: 429 MSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 488

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+      + M+ +G  P   T+N+L+  L    K+ EA++ ++ M   GI+P++++++ 
Sbjct: 489 LKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDC 548

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGY   G   KAFS+ DEM   G  PT  TY SL+  L K   +I A++  ++     
Sbjct: 549 LINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVP 608

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D VM N LI   C +GN+++A SL  EM +  + PD  TY +L+ G CR+GK   A 
Sbjct: 609 AAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAI 668

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
               + + RG      +  P ++ Y   + G+ K  +        ++M   G+T D  T 
Sbjct: 669 LFAKEAEARG------NLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTT 722

Query: 301 FSLIEGIASVDK 312
            ++I+G + + K
Sbjct: 723 NAMIDGYSRMGK 734



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 164/304 (53%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R + PD  T+   ++ +C EG  +++S ++++M+++G  PT VTYNT++  YC KG 
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M  +G+     TYN+LIH+L    +  +   +L++M ++ I P+ +TYN 
Sbjct: 244 FKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNT 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NG+   G    A  L +EM+  G+ P  +T+ +LI     +    EA ++F    AKG
Sbjct: 304 LLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++   V +  L+DG C N   + A      M R  V    +TY  ++ G C+ G ++EA 
Sbjct: 364 LIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAV 423

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L++M + GI PD +       TY+ALI G C+      A+E++  +   G++P+   Y
Sbjct: 424 VMLNEMSKDGIDPDIV-------TYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIY 476

Query: 301 FSLI 304
            +LI
Sbjct: 477 STLI 480



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 157/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G+     +YG  + G+CK    + A     +MK NG+    +TY  +IDG C  G 
Sbjct: 359 MEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGF 418

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM K GI P   TY+ LI+      ++  A +++  +   G+ P+ I Y+ 
Sbjct: 419 LDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYST 478

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   CR G  K+   +++ MI +G  P   T+  L+  L K  ++ EA++      + G
Sbjct: 479 LIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V F+ LI+G+ ++G   +AFS+  EM ++  HP   TY +L+ G C+ G +  A 
Sbjct: 539 ILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAE 598

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           + L  ++      D +         N LI  +CK+   D A  L  EMV + I PD  TY
Sbjct: 599 KFLKSLQNVPAAVDTV-------MCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTY 651

Query: 301 FSLIEGIA 308
            SLI G+ 
Sbjct: 652 TSLISGLC 659



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 153/308 (49%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P  YT  + +  + K          L++M +  + P   T+N LI+  C +G+ + +
Sbjct: 153 GFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKS 212

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M K G  PT  TYN ++H    + +   A ++L  M  KG+  D  TYN+LI+ 
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHD 272

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR   + K + L  +M  + I P  +TY +L+   S + +++ A QL    L  G+ P+
Sbjct: 273 LCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPN 332

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V FNALIDGH + GN + A  +   M+   +   EV+Y  L+ G C+  + + AR    
Sbjct: 333 HVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYM 392

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +MKR G+          R+TY  +I GLCKN   D A  +L EM   GI PD  TY +LI
Sbjct: 393 RMKRNGVCVG-------RITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALI 445

Query: 305 EGIASVDK 312
            G   V +
Sbjct: 446 NGFCRVGR 453



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 158/309 (51%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV  D  TY   +  +C+  R  +   +L  M++  + P  VTYNTL++G+ N+G 
Sbjct: 254 MNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGK 313

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A    +EM+  G+ P   T+N LI   + E    EA  M   M  KG++   ++Y +
Sbjct: 314 VLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGV 373

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+      A   +  M   G+    +TYT +I  L K   + EA  +       G
Sbjct: 374 LLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDG 433

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++ALI+G C  G ++ A  ++  + R+ + P+ + Y+TL++  CR G ++E  
Sbjct: 434 IDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETI 493

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ + M   G  PDH        T+N L+  LCK  +   AEE +R M S GI P+  ++
Sbjct: 494 RIYEAMILEGNTPDH-------FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSF 546

Query: 301 FSLIEGIAS 309
             LI G  S
Sbjct: 547 DCLINGYGS 555



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 160/318 (50%), Gaps = 8/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
           M  R + PDS+TY S +SG+C++G+   A    ++ +  G LVP  V Y   +DG    G
Sbjct: 639 MVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAG 698

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +  F FR +M K G+     T N +I       K+ +  D+L EMG +   P+  TYN
Sbjct: 699 QWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYN 758

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           IL++GY +  +   +F L+  MI  GI P  LT  S+I  + + N +    ++ + F+ +
Sbjct: 759 ILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICR 818

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D   FN LI   C NG I  AF ++  M  + +  D+ T + ++    R  + +E+
Sbjct: 819 GVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQES 878

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R +L +M ++GI P+          Y  L+ GLC+  +   A  +  EM++  I P +  
Sbjct: 879 RMVLHEMSKQGISPE-------SRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVA 931

Query: 300 YFSLIEGIASVDKAAESS 317
             +++  +A   KA E+S
Sbjct: 932 ESAMVRALAKCGKADEAS 949



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 144/290 (49%), Gaps = 28/290 (9%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            ++ LI  Y  +G ++ +      M   G  P+  T N ++  ++   + V     LKEM
Sbjct: 125 VFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEM 184

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
            ++ I PD  T+NILIN  C  G+ KK+  L  +M   G  PT++TY +++    K+ R 
Sbjct: 185 LKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRF 244

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             A +L ++   KG+  D+  +N LI   C +    + + LL++M +  +HP+EVTYNTL
Sbjct: 245 KAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTL 304

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP-------------------------- 260
           ++G   +GKV  AR+LL++M   G+ P+H++FN                           
Sbjct: 305 LNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGL 364

Query: 261 --TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             T ++Y  L+ GLCKN E DLA      M   G+     TY  +I+G+ 
Sbjct: 365 IGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLC 414



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 8/290 (2%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            G+ PD  T  S + G+C+   LE   ++L+     G+     T+N LI   C  G +  A
Sbjct: 784  GILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWA 843

Query: 65   FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            F   + M   GI    +T + ++  L    +  E+  +L EM ++GI P+S  Y  L+NG
Sbjct: 844  FDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNG 903

Query: 125  YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             CR G+ K AF + +EMI   I P  +  ++++  L+K  +  EA  L  + L   ++P 
Sbjct: 904  LCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPT 963

Query: 185  IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            I  F  L+   C NGN+  A  L   M    +  D V+YN L+ G C +G +  A  L +
Sbjct: 964  IASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFE 1023

Query: 245  QMKRRGIKPDHISFNPTRLTYNALIQG-LCKNQEGDLAEELLREMVSKGI 293
            +MKR G       F     TY AL+ G L +  E    + +L++++++G 
Sbjct: 1024 EMKRDG-------FLANVTTYKALVGGILSQGTEFSGTDIILKDLLARGF 1066



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 46/346 (13%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G+  D  T  + + G  + G++E+   +L +M      P   TYN L+ GY  + +
Sbjct: 710  MDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKH 769

Query: 61   LEMAFSFRDEMVKQGIMPTAST-YNLLIHELLMERKMVEAD-DMLKEMGEKGIVPDSITY 118
            +  +F     M+  GI+P   T Y++++   + E  M+E    +LK    +G+  D  T+
Sbjct: 770  VSTSFMLYRSMILSGILPDKLTCYSIILG--ICESNMLEIGLKILKAFICRGVEVDRHTF 827

Query: 119  NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            N+LI+  C  G    AF + + M   GI     T  +++ VL++ +R  E+  +      
Sbjct: 828  NMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSK 887

Query: 179  KGMLPDIVMFNALIDGHCTNGNIERAFS-------------------------------- 206
            +G+ P+   +  L++G C  G+I+ AF                                 
Sbjct: 888  QGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADE 947

Query: 207  ---LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
               LL+ M +MK+ P   ++ TLMH  C+ G V EA  L   M   G+K D +S      
Sbjct: 948  ASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVS------ 1001

Query: 264  TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
             YN LI GLC   +  +A EL  EM   G   +  TY +L+ GI S
Sbjct: 1002 -YNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILS 1046



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S +++LI   L E  + ++ ++ + MG  G  P   T N ++    +       +S   E
Sbjct: 124 SVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKE 183

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M+ + I P + T+  LI VL  +    ++  L +     G  P IV +N ++  +C  G 
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            + A  LL  M+   V+ D  TYN L+H  CR  +  +   LL  M++R I P+ +    
Sbjct: 244 FKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEV---- 299

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              TYN L+ G     +  +A +LL EM++ G++P+  T+ +LI+G
Sbjct: 300 ---TYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDG 342



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 12/239 (5%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M S G+  D  T  + VS + +  R +E+  +L +M + G+ P +  Y  L++G C  G+
Sbjct: 850  MTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGD 909

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ AF  ++EM+   I P     + ++  L    K  EA  +L+ M +  +VP   ++  
Sbjct: 910  IKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTT 969

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L++ +C+ GN  +A  L   M + G++  +++Y  LI  L  +  M  A +LFE     G
Sbjct: 970  LMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDG 1029

Query: 181  MLPDIVMFNALIDGHCTNGN------------IERAFSLLKEMDRMKVHPDEVTYNTLM 227
             L ++  + AL+ G  + G             + R F      + M   P +++ N  +
Sbjct: 1030 FLANVTTYKALVGGILSQGTEFSGTDIILKDLLARGFITAMSFNHMINFPQQISVNAYL 1088



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 29/257 (11%)

Query: 62  EMAFSFRDEMVKQGIMPT---ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           ++A  F   +VKQ  + T      + +  H L+  R    A  +LKE+        S  +
Sbjct: 51  KLALKFLKWVVKQPGLDTDHIVQLFCITTHILVRARMYDPARHILKELSLMS-GKSSFVF 109

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             L+  Y  C +    F +                  LI V  ++  + ++ ++F     
Sbjct: 110 GALMATYRLCNSNPSVFDI------------------LIRVYLREGMIQDSLEIFRLMGL 151

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G  P +   NA++     +      +S LKEM + K+ PD  T+N L++  C +G  ++
Sbjct: 152 YGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKK 211

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           +  L+ +M++ G       + PT +TYN ++   CK      A ELL  M  KG+  D  
Sbjct: 212 SSYLMQKMEKSG-------YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVC 264

Query: 299 TYFSLIEGIASVDKAAE 315
           TY  LI  +   +++A+
Sbjct: 265 TYNMLIHDLCRSNRSAK 281


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 171/328 (52%), Gaps = 23/328 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD+ TY   ++ +C+  ++E+A  + ++MK  G+ P   TY  LID +C  G 
Sbjct: 279 MMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGL 338

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A S+ DEM   G      TY  L+H  L  +++ +A D+   M + G  P++ITY+ 
Sbjct: 339 IEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSA 398

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK----------------GIQPTMLTYTSLIFVLSKQN 164
           L++G C+ G  +KA  ++ ++I                   I P ++TY +LI  L K +
Sbjct: 399 LVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAH 458

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           ++++A +L +  L+ G  P+ ++++ALIDG C  G I+ A  +   M +    P   TY 
Sbjct: 459 KVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYT 518

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           +L+    +  +++ A ++L QM          S  P  +TY A+I GLC+  E   A +L
Sbjct: 519 SLIDAMFKDRRLDLAMKVLSQMVES-------SCTPNVVTYTAMIDGLCRIGECQKALKL 571

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDK 312
           L  M  KG +P+  TY +LI+G+    K
Sbjct: 572 LSMMEEKGCSPNVVTYTALIDGLGKSGK 599



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 39/345 (11%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+  TYG+ + G+CK  ++ +A  +L+ M  NG  P  + Y+ LIDG+C  G ++ A 
Sbjct: 440 IAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQ 499

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
                M K G +PT  TY  LI  +  +R++  A  +L +M E    P+ +TY  +I+G 
Sbjct: 500 EVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGL 559

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR G  +KA  L   M  KG  P ++TYT+LI  L K  ++  + QLF     KG  P+ 
Sbjct: 560 CRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNY 619

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEM------------------------------DRMK 215
           V +  LI+  C  G ++ A SLL EM                              + ++
Sbjct: 620 VTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELE 679

Query: 216 VH---PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT-RLTYNALIQG 271
            H   P    Y  L+    + G++EEA  L  +M          S N T +  Y +LIQ 
Sbjct: 680 SHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELS-----SSLNITSKDMYTSLIQA 734

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LC   + + A EL  E+  KG+ P+ + +  LI+G+  V+K  E+
Sbjct: 735 LCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEA 779



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 29/329 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEE------ASRMLEQMKENGLVPTAVTYNTLIDG 54
           M   G  P    Y  F+  +C    L        A ++ E+M  +  V   V        
Sbjct: 203 MADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARC 262

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
            C  G  +MAF     M+ +G +P  STY+ +I  L    K+ +A  + +EM   G+ PD
Sbjct: 263 LCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPD 322

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             TY ILI+ +C+ G  ++A S  DEM   G    ++TYT+L+    K  ++ +A  +F 
Sbjct: 323 VYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFN 382

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM----DRM------------KVHP 218
             +  G  P+ + ++AL+DG C  G I++A  +  ++    D +             + P
Sbjct: 383 RMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAP 442

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278
           + VTY  L+ G C+  KV +A+ LLD M   G +P+HI        Y+ALI G CK  + 
Sbjct: 443 NVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHI-------IYDALIDGFCKVGKI 495

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGI 307
           D A+E+   M   G  P  +TY SLI+ +
Sbjct: 496 DNAQEVFLRMSKCGYLPTVHTYTSLIDAM 524



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 161/429 (37%), Gaps = 117/429 (27%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ------------------------- 35
           M   G   D +T G F   +CKEGR  +A  M+E+                         
Sbjct: 66  MSESGFCMDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDE 125

Query: 36  -------MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
                  M+ N  +P  VTY TL+ G+  K  L       + M+K+G  P  S +N L+H
Sbjct: 126 AISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVH 185

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC---------------------- 126
                R    A  +LK M + G  P  + YNI I   C                      
Sbjct: 186 SYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEML 245

Query: 127 ---------------RC----GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
                          RC    G    AF +   M+ KG  P   TY+ +I  L +  ++ 
Sbjct: 246 ASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVE 305

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           +A  LF+   + G+ PD+  +  LID  C  G IE+A S   EM  +    + VTY  L+
Sbjct: 306 KAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALL 365

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------------------------- 259
           H   +  ++ +A  + ++M   G  P+ I+++                            
Sbjct: 366 HAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDN 425

Query: 260 ----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                           P  +TY ALI GLCK  +   A+ELL  M+S G  P+   Y +L
Sbjct: 426 VGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDAL 485

Query: 304 IEGIASVDK 312
           I+G   V K
Sbjct: 486 IDGFCKVGK 494



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 90/217 (41%), Gaps = 36/217 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  P+  TY + + G+ K G+++ + ++  QM   G  P  VTY  LI+  C  G 
Sbjct: 575 MEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGL 634

Query: 61  LEMAFSFRDEMVK---------------------------------QGIMPTASTYNLLI 87
           L+ A S   EM +                                  G +P A  Y LLI
Sbjct: 635 LDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLI 694

Query: 88  HELLMERKMVEADDMLKEMGEKGI---VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
                  ++ EA ++ KEM E      +     Y  LI   C     +KAF L+ E+  K
Sbjct: 695 DNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRK 754

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           G+ P +  +  LI  L K N+  EA QL  +   +G+
Sbjct: 755 GVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGV 791



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 120/315 (38%), Gaps = 51/315 (16%)

Query: 35  QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
           ++K+ G  P+  TYN L+      G ++M F  + EM + G      T       L  E 
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 95  KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
           +  +A  M++    K    D++    +I+G        +A S    M      P ++TY 
Sbjct: 90  RWSDALVMIEREDFK---LDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYR 146

Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
           +L+    K+ ++    ++    + +G  P+  +FN+L+  +C   +   A+ LLK M   
Sbjct: 147 TLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADC 206

Query: 215 KVHPDEVTYNTLM-----------------------------------------HGRCRQ 233
              P  V YN  +                                            C  
Sbjct: 207 GCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGM 266

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           GK + A +++  M  +G  PD         TY+ +I  LC+  + + A  L +EM S G+
Sbjct: 267 GKFDMAFQIIKVMMGKGFVPD-------TSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 319

Query: 294 TPDDNTYFSLIEGIA 308
            PD  TY  LI+   
Sbjct: 320 NPDVYTYTILIDSFC 334


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  +  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 135/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 170/345 (49%), Gaps = 29/345 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + PD +T    V+  CK G++E A   + +M++ G    AV+YN+L+DGY + G+
Sbjct: 57  MRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGD 116

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYN 119
           +E A      M ++G+M    T  LLI     + K+ EA+ +L+EM  E G+V D   Y 
Sbjct: 117 IEGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYG 176

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYC+ G    A  + DEM+  G++  +    SLI    K  ++ E ++L       
Sbjct: 177 ALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKL 236

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + PD   +  L+DG+C +G   +AF++  +M R  + P  VTYNTL+ G CR G  ++A
Sbjct: 237 DLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDA 296

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
            RL   M +RG+ P+ + +                            N +   +N +I G
Sbjct: 297 LRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMING 356

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LCK  E D A+E  + M   G  PD  TY +L +G   V    E+
Sbjct: 357 LCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEA 401



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 182/345 (52%), Gaps = 32/345 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
           M  +GV  +  T    + G CK+ ++EEA ++L +M KE+G+V     Y  LIDGYC  G
Sbjct: 127 MSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVG 186

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  A   RDEM+K G+       N LI+      ++ E + +L  M +  + PDS +Y 
Sbjct: 187 KMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYC 246

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++GYCR G + KAF++ D+M+ KGI+PT++TY +L+  L +     +A +L+   L +
Sbjct: 247 TLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQR 306

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ P+ V +  L+DG    G+  RA +L  ++    ++     +NT+++G C+ G+++ A
Sbjct: 307 GVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGA 366

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
           +    +M+  G KPD I++                             P+   YN+LI G
Sbjct: 367 KETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVG 426

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKA 313
           L  +++     +LL EM ++G++P+  TY +LI G      +DKA
Sbjct: 427 LFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKA 471



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 156/292 (53%), Gaps = 7/292 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ + +   S ++G CK G++ E  R+L  M++  L P + +Y TL+DGYC  G    A
Sbjct: 202 GLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKA 261

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F+  D+M+++GI PT  TYN L+  L       +A  +   M ++G+ P+ + Y  L++G
Sbjct: 262 FNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDG 321

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             + G+  +A +L D+++ +GI  ++  + ++I  L K   M  A + F+     G  PD
Sbjct: 322 LFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPD 381

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  L DG+C  GN+E AF + ++M++ ++ P    YN+L+ G     K+ +   LL 
Sbjct: 382 GITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLA 441

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +M  RG+ P+ +       TY ALI G C     D A     EM+ KG  P+
Sbjct: 442 EMDTRGLSPNVV-------TYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPN 486



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 167/346 (48%), Gaps = 28/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P   TY + + G+C+ G  ++A R+   M + G+ P  V Y TL+DG    G+
Sbjct: 268 MLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGD 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  D+++ +GI  +   +N +I+ L    +M  A +  K M E G  PD ITY  
Sbjct: 328 FSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRT 387

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L +GYC+ GN ++AF + ++M  + I P++  Y SLI  L    ++ +   L      +G
Sbjct: 388 LSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRG 447

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V + ALI G C  G +++AFS   EM      P+ +  + ++    R G+++EA 
Sbjct: 448 LSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEAN 507

Query: 241 RLLDQMKRRGIKPDH---------------------------ISFN-PTRLTYNALIQGL 272
            LL +M    +  DH                           I F+ P  + YN  + GL
Sbjct: 508 MLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGL 567

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           CK+ + + A      +     TPD+ TY +LI G ++     E+ N
Sbjct: 568 CKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFN 613



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 161/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P   +  S +S + K G    A  + +QM+   +VP   T   +++ YC  G 
Sbjct: 22  MGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGK 81

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A  F  EM K G    A +YN L+   +    +  A  +LK M EKG++ + +T  +
Sbjct: 82  VERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTL 141

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           LI GYC+    ++A  +  EM  + G+      Y +LI    K  +M +A ++ +  L  
Sbjct: 142 LIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKV 201

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  ++ + N+LI+G+C NG +     LL  M ++ + PD  +Y TL+ G CR G   +A
Sbjct: 202 GLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKA 261

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             + DQM R+GI+       PT +TYN L++GLC+  +   A  L   M+ +G+TP++  
Sbjct: 262 FNVCDQMLRKGIE-------PTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVG 314

Query: 300 YFSLIEGI 307
           Y +L++G+
Sbjct: 315 YCTLLDGL 322



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 164/376 (43%), Gaps = 77/376 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASR----------------------------- 31
           M+  G +PD  TY +   G CK G +EEA +                             
Sbjct: 373 MEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKK 432

Query: 32  ------MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                 +L +M   GL P  VTY  LI G+C++G L+ AFS   EM+ +G  P     + 
Sbjct: 433 ISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSK 492

Query: 86  LIHEL----------LMERKMVEAD-------------------------DMLKEMGEKG 110
           ++  L          ++ +KMV+ D                         D L E   K 
Sbjct: 493 IVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKF 552

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
            +P+++ YNI + G C+ G    A      + H    P   TY +LI   S    + EA 
Sbjct: 553 SLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAF 612

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            L +  + KG++P+I  +NAL++G C +G ++RA  L  ++    + P+ VTYN L+ G 
Sbjct: 613 NLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGY 672

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C+ G   EA  L  +M + GI P  I       TY++LI G CK  + + A +LL EM +
Sbjct: 673 CKSGSPREALDLRGKMLKEGISPSII-------TYSSLINGFCKQSDVEEAMKLLNEMKA 725

Query: 291 KGITPDDNTYFSLIEG 306
             +     T+  L+EG
Sbjct: 726 SNVDQTIATFSKLVEG 741



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 153/315 (48%), Gaps = 44/315 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG+ P+  TYG+ ++G C +GRL++A     +M   G  P  +  + ++      G 
Sbjct: 443 MDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGR 502

Query: 61  LEMA--------------------------------FSFRDEMVKQGI---MPTASTYNL 85
           ++ A                                +   D + +  I   +P    YN+
Sbjct: 503 IDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNVVYNI 562

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
            +  L    K+ +A      +      PD+ TY  LI+G+   G   +AF+L DEM++KG
Sbjct: 563 AMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKG 622

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P + TY +L+  L K   +  A +LF+    KG++P++V +N LIDG+C +G+   A 
Sbjct: 623 LVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREAL 682

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  +M +  + P  +TY++L++G C+Q  VEEA +LL++MK   +       + T  T+
Sbjct: 683 DLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNV-------DQTIATF 735

Query: 266 NALIQGLCKNQEGDL 280
           + L++G    Q GD+
Sbjct: 736 SKLVEGCI--QHGDV 748



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 5/238 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P++  Y   ++G+CK G++ +A R    +      P   TY TLI G+   G +  AF+ 
Sbjct: 555 PNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNL 614

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           RDEMV +G++P  +TYN L++ L     +  A  +  ++  KG++P+ +TYNILI+GYC+
Sbjct: 615 RDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCK 674

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+ ++A  L  +M+ +GI P+++TY+SLI    KQ+ + EA +L     A  +   I  
Sbjct: 675 SGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIAT 734

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           F+ L++G   +G++++  S L  M  M      +T     H +    ++  A+ +LD 
Sbjct: 735 FSKLVEGCIQHGDVKK-MSKLHNMMHMACPSAGIT----SHKQMELSELSNAKEMLDS 787



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 121/253 (47%), Gaps = 8/253 (3%)

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           Y  KG ++ A    D M K G  P+  + N L+  L+   +   A  +  +M    IVPD
Sbjct: 6   YAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPD 65

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             T  I++N YC+ G  ++A     EM   G +   ++Y SL+        +  A  + +
Sbjct: 66  VFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLK 125

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQ 233
               KG++ + V    LI G+C    +E A  +L+EM++   V  DE  Y  L+ G C+ 
Sbjct: 126 FMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKV 185

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           GK+ +A R+ D+M + G+K +           N+LI G CKN +    E LL  M    +
Sbjct: 186 GKMGDAIRVRDEMLKVGLKMN-------LFVCNSLINGYCKNGQVHEGERLLMCMRKLDL 238

Query: 294 TPDDNTYFSLIEG 306
            PD  +Y +L++G
Sbjct: 239 KPDSYSYCTLVDG 251



 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 82/141 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+  TY + ++G+CK G L+ A R+ +++   GL+P  VTYN LIDGYC  G+
Sbjct: 618 MVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGS 677

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A   R +M+K+GI P+  TY+ LI+    +  + EA  +L EM    +     T++ 
Sbjct: 678 PREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSK 737

Query: 121 LINGYCRCGNAKKAFSLHDEM 141
           L+ G  + G+ KK   LH+ M
Sbjct: 738 LVEGCIQHGDVKKMSKLHNMM 758



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 103/198 (52%), Gaps = 8/198 (4%)

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +++  Y   G  K A  + D M   G +P++ +  SL+  L K+     A  +++     
Sbjct: 1   MILKVYAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRL 60

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++PD+     +++ +C  G +ERA   ++EM+++    + V+YN+L+ G    G +E A
Sbjct: 61  DIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGA 120

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDN 298
           + +L  M  +G+  +       ++T   LI+G CK  + + AE++LREM  + G+  D+ 
Sbjct: 121 KGVLKFMSEKGVMRN-------KVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEY 173

Query: 299 TYFSLIEGIASVDKAAES 316
            Y +LI+G   V K  ++
Sbjct: 174 AYGALIDGYCKVGKMGDA 191


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 162/307 (52%), Gaps = 9/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
           G  PD ++Y   +  +C +G+  +A  +L  M E G V  P  V YNT+IDG+  +G++ 
Sbjct: 190 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 249

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EMV++GI P   TYN ++H L   R M +A+  L++M  K ++P++ TYN LI
Sbjct: 250 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 309

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            GY   G  K+A  +  EM    I P ++T + L+  L K  ++ EA  +F+    KG  
Sbjct: 310 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 369

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +N +++G+ T G +     L   M    + PD  T+N L+      G +++A  +
Sbjct: 370 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMII 429

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++M+  G+KPD +       TY  +I  LC+  + D A E   +M+ +G+ PD   Y  
Sbjct: 430 FNEMRDHGVKPDVV-------TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 482

Query: 303 LIEGIAS 309
           LI+G  +
Sbjct: 483 LIQGFCT 489



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 168/342 (49%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ V P+++TY + + G    G+ +EA R+ ++M+ + ++P  VT + L+   C  G 
Sbjct: 293 MVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 352

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M  +G  P   +YN++++    +  +V+  D+   M   GI PD  T+N+
Sbjct: 353 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNV 412

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y  CG   KA  + +EM   G++P ++TY ++I  L +  +M +A + F   + +G
Sbjct: 413 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 472

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE--------------------------MDRM 214
           + PD   +N LI G CT+G++ +A  L+ E                          MD  
Sbjct: 473 VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 532

Query: 215 KV---------HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +         HPD V Y+ LM G C  GK+E+A R+ D M   GI+P+ +        Y
Sbjct: 533 NIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV-------VY 585

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             L+ G CK    D    L REM+ +GI P    Y  +I+G+
Sbjct: 586 CTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 627



 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD ++Y   ++G   +G L + + + + M  +G+ P   T+N LI  Y N G 
Sbjct: 363 MAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGM 422

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM   G+ P   TY  +I  L    KM +A +   +M ++G+ PD   YN 
Sbjct: 423 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 482

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  E+++ G+   ++ ++S+I  L K  R+++A  +F+  +  G
Sbjct: 483 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 542

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V+++ L+DG+C  G +E+A  +   M    + P+ V Y TL++G C+ G+++E  
Sbjct: 543 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 602

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M +RGIKP  I        Y+ +I GL +      A+    EM   GI  D  TY
Sbjct: 603 SLFREMLQRGIKPSTI-------LYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTY 655

Query: 301 FSLIEGI 307
             ++ G+
Sbjct: 656 NIVLRGL 662



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 146/296 (49%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD Y Y   + G C  G L +A  ++ ++  NG+    V ++++I+  C  G 
Sbjct: 468 MIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 527

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D  V  G+ P A  Y++L+    +  KM +A  +   M   GI P+ + Y  
Sbjct: 528 VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCT 587

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ G   +  SL  EM+ +GI+P+ + Y+ +I  L +  R + A   F      G
Sbjct: 588 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESG 647

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  DI  +N ++ G   N   + A  L KE+  M V  + +T NT++ G  +  +VEEA+
Sbjct: 648 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK 707

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L   + R  + P+ +       TY+ +I  L K    + AE++   M + G  P+
Sbjct: 708 DLFASISRSRLVPNVV-------TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 756



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 154/307 (50%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TY + ++ +C+ G++++A     QM + G+ P    YN LI G+C  G+
Sbjct: 433 MRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGS 492

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     E++  G+      ++ +I+ L    ++++A ++       G+ PD++ Y++
Sbjct: 493 LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSM 552

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  +KA  + D M+  GI+P ++ Y +L+    K  R+ E   LF   L +G
Sbjct: 553 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRG 612

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  ++++ +IDG    G    A     EM    +  D  TYN ++ G  +    +EA 
Sbjct: 613 IKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAI 672

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +++   +K + I       T N +I G+ + +  + A++L   +    + P+  TY
Sbjct: 673 FLFKELRAMNVKINII-------TLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTY 725

Query: 301 FSLIEGI 307
             +I  +
Sbjct: 726 SIMITNL 732



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 142/338 (42%), Gaps = 66/338 (19%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           L PT+ TY  L+D        E+A +F  ++++ G+       N L+      ++  EA 
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 100 DDMLKEMGEKGIVPDSITYNIL-------------------------------------I 122
           D +L    E G VPD  +Y+IL                                     I
Sbjct: 180 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVI 239

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + G+  KA  L  EM+ +GI P ++TY S++  L K   M +A+      + K +L
Sbjct: 240 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 299

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+   +N LI G+ + G  + A  + KEM R  + PD VT + LM   C+ GK++EAR +
Sbjct: 300 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 359

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D M  +G  PD  S+N                            P   T+N LI+    
Sbjct: 360 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYAN 419

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               D A  +  EM   G+ PD  TY ++I  +  + K
Sbjct: 420 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 457



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 123/253 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+  Y   + G C  G++E+A R+ + M   G+ P  V Y TL++GYC  G ++  
Sbjct: 542 GLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEG 601

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM+++GI P+   Y+++I  L    + V A     EM E GI  D  TYNI++ G
Sbjct: 602 LSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 661

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +     +A  L  E+    ++  ++T  ++I  + +  R+ EA  LF +     ++P+
Sbjct: 662 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPN 721

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ +I      G +E A  +   M      P+    N ++    ++ ++  A   L 
Sbjct: 722 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLS 781

Query: 245 QMKRRGIKPDHIS 257
           ++  R    +H++
Sbjct: 782 KIDERNFSLEHLT 794



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 114/243 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   Y + V+G CK GR++E   +  +M + G+ P+ + Y+ +IDG    G 
Sbjct: 573 MVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGR 632

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM + GI     TYN+++  L   R   EA  + KE+    +  + IT N 
Sbjct: 633 TVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 692

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  +    ++A  L   +    + P ++TY+ +I  L K+  + EA+ +F +    G
Sbjct: 693 MIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 752

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+  + N ++        I RA + L ++D      + +T   L+     +G   E  
Sbjct: 753 CEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQI 812

Query: 241 RLL 243
           R L
Sbjct: 813 RFL 815



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 103/233 (44%), Gaps = 23/233 (9%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILI--------NGYCRCGNAKKAFSLHDEMIHKG---- 145
           EA D+L E+  +G        N  +        +  CR G A  A +L +    +     
Sbjct: 60  EAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPAL-AVALFNRAASRAQGPR 118

Query: 146 -IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + PT  TY  L+   ++ +R   A   F   L  G+  +I++ N L++G C     + A
Sbjct: 119 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA 178

Query: 205 FS-LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              LL     +   PD  +Y+ L+   C QGK  +A  LL  M   G        +P  +
Sbjct: 179 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-----VCSPNVV 233

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
            YN +I G  K  + + A +L +EMV +GI PD  TY S++  +    ++DKA
Sbjct: 234 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 286


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 8/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            V PD YTY   +  +C+ G ++ A  ML +++ +G+ PT VTYN L+D  C  G +E A
Sbjct: 211 AVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEA 270

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  MV+  + P+  T+ +LI+ L   ++  E D +L+EM   GI P+ + YN LI  
Sbjct: 271 FQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGW 330

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +CR G+  +A  L DEM+ KGI+ T++TY  +   L K+  M  A+Q+ +  L  GM   
Sbjct: 331 HCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVH 390

Query: 185 IVMFNALIDGHCT-NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
             +FN+++  H    G ++    L++EM    + P++      +   C++GK EEA  + 
Sbjct: 391 CSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIW 450

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +  +G+  +         T NALI GLC+      A ++L+ MV  G+  D  TY  +
Sbjct: 451 FLVLGKGLGVNIA-------TSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIM 503

Query: 304 IEGIASVDKAAES 316
           I+      K  E+
Sbjct: 504 IQFCCKASKMEEA 516



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 149/290 (51%), Gaps = 7/290 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+ D  TY   +   CK  ++EEA ++ + M + G  P   T+NT +  YCN G 
Sbjct: 488 MVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGK 547

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      D+M  +G+ P   TY  +I      + + +A+  L E+ + G+ P+++ YN 
Sbjct: 548 VEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNA 607

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GY R G+   A  + D M H GIQPT +TY SL++ +     + EA ++F   + K 
Sbjct: 608 LIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKN 667

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   ++ +  +I G C  G I+ A    KEM    + P+++TY TLM+  C+ G  EEA 
Sbjct: 668 IELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAF 727

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           +L D+M   GI PD +S       YN LI G C+    D   E   EM S
Sbjct: 728 KLFDEMVSSGIVPDTVS-------YNTLISGCCEVDSLDKIVESPAEMSS 770



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 164/347 (47%), Gaps = 31/347 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R ++P+     + +  +CK G+ EEA+ +   +   GL     T N LI G C   N
Sbjct: 418 MVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNN 477

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      MV  G+     TYN++I       KM EA  +  +M ++G  PD  T+N 
Sbjct: 478 MKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNT 537

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +  YC  G  +    L D+M  +G++P ++TY ++I    K   + +A++     +  G
Sbjct: 538 FLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNG 597

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V++NALI G+  NG+I  A  +L  M    + P  +TYN+LM+  C  G VEEA+
Sbjct: 598 LRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAK 657

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            +  Q   + I+   I +                             P ++TY  L+   
Sbjct: 658 EIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAY 717

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAES 316
           CK    + A +L  EMVS GI PD  +Y +LI G   + S+DK  ES
Sbjct: 718 CKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDKIVES 764



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 163/352 (46%), Gaps = 43/352 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M S+G++    TY      +CKEG +E A ++L++M   G+      +N+++  +     
Sbjct: 347 MVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTG 406

Query: 56  -------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
                                          C +G  E A      ++ +G+    +T N
Sbjct: 407 RLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSN 466

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            LIH L     M EA  +LK M + G+  D ITYNI+I   C+    ++A  L D+MI +
Sbjct: 467 ALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKR 526

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G +P + T+ + +       ++ +   L +   ++G+ PDIV +  +IDG+C   ++ +A
Sbjct: 527 GFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKA 586

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
              L E+ +  + P+ V YN L+ G  R G + +A  +LD MK  GI+       PT +T
Sbjct: 587 NKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQ-------PTPIT 639

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           YN+L+  +C     + A+E+  + + K I      Y  +I+G   + K  E+
Sbjct: 640 YNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEA 691


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++ +EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E A    K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   +    + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQISDIYVFSGLIIAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LFE  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG +  A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A    + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 133/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++E+A+ + E+M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A      MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 137/253 (54%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P   ++ + ++G  K G L+E  R+   M+ +G+ P   TY+ LI+G C +  +E A
Sbjct: 166 GLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDA 225

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM+  G++P   T+  LI       ++  A ++ K+M  + + PD ITYN LI G
Sbjct: 226 NELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+ K+A  L DEM  KG++P  +TYT+LI    K+  +  A    +  + + +  D
Sbjct: 286 LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLD 345

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V + ALI G C  G    A  +L+EM  + + P+  TY  +++  C++G V    +LL 
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 245 QMKRRGIKPDHIS 257
           +M+R G  P  ++
Sbjct: 406 EMQRDGYVPSVVT 418


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGCMP 414



 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 135/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 160/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 135/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 167/309 (54%), Gaps = 11/309 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   D  +YG+ + G+CK G    A  +L+++    +   AV YNT+I G C   ++  A
Sbjct: 155 GFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDA 214

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EMV +GI P   TY+ LI    +  K+ +A D+  ++  + I PD  T+NIL++G
Sbjct: 215 FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDG 274

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAKGML 182
           +C+    K+  ++   M+ +GI P ++TY SL+  + L K+     A  +F      G+ 
Sbjct: 275 FCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVN--TAKSIFNTMAQGGVN 332

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PDI  +N LI+G C    +++A +L  EM    + P+ VTYN+L+ G  + G++  A +L
Sbjct: 333 PDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQL 392

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +DQM  RG+ P+        LTYN++I  L K  + D A  L+ +   +GI P   TY  
Sbjct: 393 VDQMHDRGVPPN-------ILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTI 445

Query: 303 LIEGIASVD 311
           LI+G+  V+
Sbjct: 446 LIDGLCKVE 454



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 165/320 (51%), Gaps = 27/320 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ P+  TY + +SG    G+L++A  +  ++    + P   T+N L+DG+C    
Sbjct: 221 MVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRK 280

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++   +    M+KQGI+P   TYN L+    + +++  A  +   M + G+ PD  +YNI
Sbjct: 281 MKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNI 340

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     KA +L +EM  K I P ++TY SLI  LSK  R+  A QL +    +G
Sbjct: 341 LINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRG 400

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV------------------- 221
           + P+I+ +N++ID       +++A +L+ +     + P                      
Sbjct: 401 VPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITV 460

Query: 222 -TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TYN ++HG C++G  +EA  LL +MK     P+ +       TY   I+ L  N E D 
Sbjct: 461 NTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAV-------TYEITIRSLLDNNENDK 513

Query: 281 AEELLREMVSKGITPDDNTY 300
           AE+L REM+++G+     +Y
Sbjct: 514 AEKLFREMITRGLLNRSASY 533



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 11/305 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG----NLEM 63
           P ++ +   +  + K         + ++M+  G+ P     N LI  +C  G     +  
Sbjct: 84  PPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQ 143

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF F D++V  G      +Y  LIH L    +   A D+L+ +  K +  +++ YN +I 
Sbjct: 144 AFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIY 203

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+  +   AF L+ EM+ KGI P ++TY++LI       ++ +A  LF   + + + P
Sbjct: 204 GMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKP 263

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D   FN L+DG C +  ++   ++   M +  + PD VTYN+LM G C   +V  A+ + 
Sbjct: 264 DGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIF 323

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + M + G+ PD  S       YN LI G CK ++ D A  L  EM  K I P+  TY SL
Sbjct: 324 NTMAQGGVNPDIRS-------YNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSL 376

Query: 304 IEGIA 308
           I+G++
Sbjct: 377 IDGLS 381



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 146/311 (46%), Gaps = 11/311 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           +Y S  +       +++A  +  ++      P A  +N ++       +     S   +M
Sbjct: 53  SYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKM 112

Query: 72  VKQGIMPTASTYNLLIHEL----LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +GI P     N+LI+      L+  ++ +A     ++   G   D ++Y  LI+G C+
Sbjct: 113 EFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCK 172

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A  L   +  K +Q   + Y ++I+ + K   + +A  L+   ++KG+ P++V 
Sbjct: 173 VGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVT 232

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ALI G    G ++ A  L  ++    + PD  T+N L+ G C+  K++E + +   M 
Sbjct: 233 YSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMM 292

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           ++GI PD +       TYN+L+ G C  +E + A+ +   M   G+ PD  +Y  LI G 
Sbjct: 293 KQGIIPDVV-------TYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGF 345

Query: 308 ASVDKAAESSN 318
             + K  ++ N
Sbjct: 346 CKIKKVDKAMN 356


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+    E K  +A+++  EM  KG+VP+ + +  LI+G
Sbjct: 197 FRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G+++ AF   K M +     D V Y  L+ G C +G+  +A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------ARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 165/326 (50%), Gaps = 28/326 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           + D Y +   ++   + G L +A        E+       T   +++        ++ + 
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN L+NGY 
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G+  + F L   M+  G+QP + TY+ LI    K+++  +A++LF+  L KG++P+ V
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXV 248

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A  L+D+M
Sbjct: 249 XFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 247 KRRGIKPDHISFNPT----------------------------RLTYNALIQGLCKNQEG 278
             +G+KPD I++                                + Y ALI GLC     
Sbjct: 309 SXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRS 368

Query: 279 DLAEELLREMVSKGITPDDNTYFSLI 304
             AE++LREM+S G+ PD  TY  +I
Sbjct: 369 VDAEKMLREMLSVGLKPDARTYTMII 394



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 131/229 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G CKE + ++A+ + ++M   GLVP  V + TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A  ++ EM  KG+ PD ITY  
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI +  +   + YT+LI  L  + R ++A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +  + D   
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVS-------YNTLMNGYIRLGDLDEGF 197

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            L   M++ G+ PD  TY  LI G     K  +++
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGXCKESKXDDAN 232


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 166/321 (51%), Gaps = 12/321 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+  ++YT    ++  C   RL  A  +L  + + G  P+  T+ TLI G C +G 
Sbjct: 36  MDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGK 95

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M  +G  P   TY  LI+ L  +R++ EA  +  +M  KGI P++ TY+ 
Sbjct: 96  IGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSS 155

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR---MIEADQLFENFL 177
           LI+G C  G+ K+A  L   MIH+ I P  LT+ +L+  L K+     M +A  LFE   
Sbjct: 156 LIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMS 215

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G++PD V +N LI G C  G +  A +L  EM      PD VTY  L    C+  ++ 
Sbjct: 216 QQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLA 275

Query: 238 EARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           EA  LL  ++   + PD HI        Y+ ++ G+C+  E + A +L  ++ SKG+ PD
Sbjct: 276 EAMVLLKVIEGTNLDPDIHI--------YSIVMDGMCRAGELEAARDLFSKLSSKGLHPD 327

Query: 297 DNTYFSLIEGIASVDKAAESS 317
             TY  +I G+      AE+S
Sbjct: 328 VRTYTIMINGLCQQGLLAEAS 348



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 141/255 (55%), Gaps = 3/255 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G QPD  TYG+ ++G+CK+ +L EA  +   M   G+ P   TY++LI G C  G+
Sbjct: 106 MTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGH 165

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME---RKMVEADDMLKEMGEKGIVPDSIT 117
            + A      M+ + IMP   T+N L+  L  E   + M +A  + +EM ++G++PD++T
Sbjct: 166 WKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVT 225

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN LI+G C  G  + A +L  EM+  G  P ++TY  L   L K +R+ EA  L +   
Sbjct: 226 YNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIE 285

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
              + PDI +++ ++DG C  G +E A  L  ++    +HPD  TY  +++G C+QG + 
Sbjct: 286 GTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLA 345

Query: 238 EARRLLDQMKRRGIK 252
           EA +L  +M    I+
Sbjct: 346 EASKLFGEMDENDIE 360



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 10/242 (4%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P+   ++ L+  +   +       + K+M   GI  ++ T NILIN +C       AFS+
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
             +++  G QP+  T+T+LI  L  + ++ EA QLF+    +G  PD++ +  LI+G C 
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
           +  +  A SL  +M    + P+  TY++L+HG C  G  +EA RL   M  R I PD   
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPD--- 184

Query: 258 FNPTRLTYNALIQGLCKN---QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
               +LT+N L+  LCK    Q  D A  L  EM  +G+ PD  TY +LI G+  V +  
Sbjct: 185 ----QLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLR 240

Query: 315 ES 316
           ++
Sbjct: 241 DA 242


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 171/299 (57%), Gaps = 13/299 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P+     + +    +  RLE+A R LE+M+  G+VP  VTYN +I GYC+   
Sbjct: 268 MQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHR 327

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG-EKGIVPDSITYN 119
           +E A    ++M  +G +P   +Y  ++  L  E+++VE  D++K+M  E G+VPD +TYN
Sbjct: 328 VEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYN 387

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+   +  +A +A     +   KG +   L Y++++  L K+ RM EA  L    L+K
Sbjct: 388 TLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSK 447

Query: 180 GML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           G   PD+V + A+++G C  G +++A  LL+ M      P+ V+Y  L++G CR GK  E
Sbjct: 448 GHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLE 507

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITP 295
           AR +++      +  +H  ++P  +TY+ ++ GL   +EG L+E  +++REMV KG  P
Sbjct: 508 AREMMN------MSEEHW-WSPNSITYSVIMHGL--RREGKLSEACDVVREMVLKGFFP 557



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 156/316 (49%), Gaps = 10/316 (3%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT-AVTYNTLIDGYCNKGN 60
           + +G + D   Y + V  +CKEGR+ EA  ++ +M   G  P   VTY  +++G+C  G 
Sbjct: 410 QEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGE 469

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M   G  P   +Y  L++ +    K +EA +M+    E    P+SITY++
Sbjct: 470 VDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSV 529

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G  R G   +A  +  EM+ KG  P  +    L+  L +  R  EA +  E  L KG
Sbjct: 530 IMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKG 589

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              ++V F  +I G C N  ++ A S+L +M  +  H D  TY TL+    ++G++ EA 
Sbjct: 590 CAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEAT 649

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M  +GI       +PT +TY  +I   C+  + D    +L +M+S+        Y
Sbjct: 650 ELMKKMLHKGI-------DPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKC--RTIY 700

Query: 301 FSLIEGIASVDKAAES 316
             +IE +  + K  E+
Sbjct: 701 NQVIEKLCVLGKLEEA 716



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 160/320 (50%), Gaps = 9/320 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+      +   +    + G+L +A ++L  M+  G+ P  +  NT ID +     
Sbjct: 233 MKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANR 292

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A  F + M   GI+P   TYN +I       ++ EA ++L++M  KG +PD ++Y  
Sbjct: 293 LEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYT 352

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ++   C+     +   L  +M  + G+ P  +TY +LI +L+K +   EA    ++   K
Sbjct: 353 IMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEK 412

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           G   D + ++A++   C  G +  A  L+ EM  +    PD VTY  +++G CR G+V++
Sbjct: 413 GFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDK 472

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A++LL  M   G KP+ +S       Y AL+ G+C+  +   A E++        +P+  
Sbjct: 473 AKKLLQVMHTHGHKPNTVS-------YTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSI 525

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY  ++ G+    K +E+ +
Sbjct: 526 TYSVIMHGLRREGKLSEACD 545



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 155/309 (50%), Gaps = 7/309 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D   Y S +  + K    + + R+L  MK  G+  T   ++ ++  Y   G L  A    
Sbjct: 206 DPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVL 265

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M + G+ P     N  I   +   ++ +A   L+ M   GIVP+ +TYN +I GYC  
Sbjct: 266 TLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDL 325

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK-GMLPDIVM 187
              ++A  L ++M  KG  P  ++Y +++  L K+ R++E   L +    + G++PD V 
Sbjct: 326 HRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVT 385

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI     + + + A   LK+        D++ Y+ ++H  C++G++ EA+ L+++M 
Sbjct: 386 YNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEML 445

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G  P      P  +TY A++ G C+  E D A++LL+ M + G  P+  +Y +L+ G+
Sbjct: 446 SKGHCP------PDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGM 499

Query: 308 ASVDKAAES 316
               K+ E+
Sbjct: 500 CRTGKSLEA 508



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 148/297 (49%), Gaps = 11/297 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P++ +Y + ++GMC+ G+  EA  M+   +E+   P ++TY+ ++ G   +G 
Sbjct: 480 MHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGK 539

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EMV +G  P     NLL+  L  + +  EA   ++E   KG   + + +  
Sbjct: 540 LSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTT 599

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+      A S+ D+M        + TYT+L+  L K+ R+ EA +L +  L KG
Sbjct: 600 VIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKG 659

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           + P  V +  +I  +C  G ++   ++L++M  R K       YN ++   C  GK+EEA
Sbjct: 660 IDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKC---RTIYNQVIEKLCVLGKLEEA 716

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             LL ++ R   + D       +  Y AL++G  K      A ++   M ++ + PD
Sbjct: 717 DTLLGKVLRTASRSD------AKTCY-ALMEGYLKKGVPLSAYKVACRMFNRNLIPD 766



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D +TY + V  + K+GR+ EA+ ++++M   G+ PT VTY T+I  YC  G ++   +  
Sbjct: 628 DVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAIL 687

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           ++M+ +      + YN +I +L +  K+ EAD +L ++       D+ T   L+ GY + 
Sbjct: 688 EKMISR--QKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKK 745

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           G    A+ +   M ++ + P +     L   L  + ++ EAD+L    + +G +
Sbjct: 746 GVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHI 799



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y   +  +C  G+LEEA  +L ++        A T   L++GY  KG    A+     M 
Sbjct: 700 YNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMF 759

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSI 116
            + ++P       L   L+++ K+ EAD ++  + E+G I P S+
Sbjct: 760 NRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERGHISPQSL 804


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 175/331 (52%), Gaps = 30/331 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P+ Y+Y   + G+CK G L +A  ++  M  +G++P  VTY TL+ GYC+ G 
Sbjct: 261 MVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGK 320

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   EM++ G  P   T N+L++ L  E ++ EA+++L++M EKG V D++T NI
Sbjct: 321 VSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNI 380

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-----------------------IQPTMLTYTSLI 157
           +I+G C  G   KA  + + M   G                         P +++Y+++I
Sbjct: 381 VIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTII 440

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K  R+ EA + F   + K + PD  +++  I   C  G I  AF +LK+M++   +
Sbjct: 441 SGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCN 500

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
               TYN+L+ G   + ++ E   L+D+M+ RG+ PD +S       YN ++  LC+   
Sbjct: 501 KTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPD-VSI------YNNVLSSLCEGGR 553

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
              A  +L EM+ KGI+P+ +++  LI+   
Sbjct: 554 VKDAPSVLDEMLQKGISPNISSFSILIKAFC 584



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 30/332 (9%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QP+  TY   + G CKEG LEEA  + E+MK +  +    +YN  + G    G L  A  
Sbjct: 197 QPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQL 256

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              EMV  G+ P   +YN+++  L     + +A  +++ M   G++PD++TY  L++GYC
Sbjct: 257 VLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYC 316

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G   +A ++  EM+  G  P   T   L++ L K+ R+ EA++L +    KG + D V
Sbjct: 317 HTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTV 376

Query: 187 MFNALIDGHCTNGNIERAFSLLKEM-----------------------DRMKVHPDEVTY 223
             N +IDG C NG +++A  ++  M                        R K  PD ++Y
Sbjct: 377 TCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISY 436

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           +T++ G C+ G+V EA++   +M  + ++PD          Y+  I   CK  +   A  
Sbjct: 437 STIISGLCKAGRVGEAKKKFIEMMGKNLQPDSA-------IYDVFIHSFCKEGKISSAFR 489

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
           +L++M  KG      TY SLI G+ S ++  E
Sbjct: 490 VLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFE 521



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 165/360 (45%), Gaps = 49/360 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P++YT+   +  +C  G L++A  + ++M E G  P   ++  L+ GYC  G 
Sbjct: 47  MVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGF 106

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                    EM + G  P    YN LI     E K  +A+ ++ EM + G+ PD +T+N 
Sbjct: 107 TSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNA 166

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI----QPTMLTYTSLIFVLSKQNRMIEADQLF--- 173
            I+  C  G   +A  +  +M    +    QP ++TY  ++    K+  + EA  LF   
Sbjct: 167 RISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKM 226

Query: 174 ---ENFLAK-----------------------------GMLPDIVMFNALIDGHCTNGNI 201
              EN + +                             GM P++  +N ++DG C NG +
Sbjct: 227 KVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVL 286

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
             A  L++ M    V PD VTY TL+HG C  GKV EA  +L +M R G  P++      
Sbjct: 287 FDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNN------ 340

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAESSN 318
             T N L+  L K      AEELL++M  KG   D  T   +I+G+ +   +DKA E  N
Sbjct: 341 -YTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVN 399



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 160/315 (50%), Gaps = 11/315 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P  Y Y   +    KEGR++  S + + M  +G+ P   T+N LI   C+ G L+ A   
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            D+M ++G  P   ++ +L+          +  ++L EM   G  P+ + YN LI+ +C+
Sbjct: 79  FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML----P 183
            G    A  L DEM   G+ P ++T+ + I  L    +++EA ++F +     +L    P
Sbjct: 139 EGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQP 198

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +I+ +N ++ G C  G +E A +L ++M   +   +  +YN  + G  R GK+ EA+ +L
Sbjct: 199 NIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVL 258

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M   G++P+  S       YN ++ GLCKN     A  L+R M S G+ PD  TY +L
Sbjct: 259 KEMVDMGMEPNVYS-------YNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTL 311

Query: 304 IEGIASVDKAAESSN 318
           + G     K +E++N
Sbjct: 312 LHGYCHTGKVSEANN 326



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 64/365 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P++YT    +  + KEGR+ EA  +L++M E G V   VT N +IDG CN G 
Sbjct: 331 MMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGK 390

Query: 61  LEMAFSFRDEMVKQG-----------------------IMPTASTYNLLIHELLMERKMV 97
           L+ A    + M   G                        MP   +Y+ +I  L    ++ 
Sbjct: 391 LDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVG 450

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA     EM  K + PDS  Y++ I+ +C+ G    AF +  +M  KG   T+ TY SLI
Sbjct: 451 EAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLI 510

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L  +N++ E   L +    +G+ PD+ ++N ++   C  G ++ A S+L EM +  + 
Sbjct: 511 MGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGIS 570

Query: 218 PDEVTYNTLMHGRCRQ----------------------------------GKVEEARRLL 243
           P+  +++ L+   C+                                   G+V +A+ L 
Sbjct: 571 PNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVGGEVVKAKELF 630

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           +    R       SF+     Y  LI  LCK+++ D A  +L +++ KG   D  ++  +
Sbjct: 631 ETALDR-------SFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPV 683

Query: 304 IEGIA 308
           I+G+ 
Sbjct: 684 IDGLG 688



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 15/253 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + +QPDS  Y  F+   CKEG++  A R+L+ M++ G   T  TYN+LI G  +K  
Sbjct: 459 MMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQ 518

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +   +   DEM ++G+ P  S YN ++  L    ++ +A  +L EM +KGI P+  +++I
Sbjct: 519 IFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSI 578

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPT-------MLTYTSLIFVLSKQNRMIEADQLF 173
           LI  +C+  +    FS  DE+    +           LT+  L+        +++A +LF
Sbjct: 579 LIKAFCKACD----FSAVDEIFEIALNVCGHKEALYSLTFNELLV----GGEVVKAKELF 630

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           E  L +       ++  LID  C +  ++ A  +L ++       D  ++  ++ G  ++
Sbjct: 631 ETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKR 690

Query: 234 GKVEEARRLLDQM 246
           G   EA  L ++M
Sbjct: 691 GNKHEADELAEKM 703


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 158/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E A    K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+         TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-------IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQTSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG +  A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 133/222 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + A      MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 174/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           +++RG Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETRGTQRSDIYVFSGLITAYLESGFLRDAIECXRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L   
Sbjct: 131 GYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+K + I       TY  +I   CK  +     +L++EM   G  P
Sbjct: 371 EMLSVGLKLE-IG------TYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           +  +I  +  +I+  C  G++     L+KEM R    P  VT
Sbjct: 377 LKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1152

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 161/309 (52%), Gaps = 8/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + + G  K G+  EAS + + ++   + P+ VTYNTLIDG C  GNLE A   
Sbjct: 409 PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRL 468

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           ++EM  Q I P   TY  L+   +    +  A ++  EM  KGI PD   Y     G  R
Sbjct: 469 KEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELR 528

Query: 128 CGNAKKAFSLHDEMIHKGIQ-PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
            G++ KAF LH+EM+      P +  Y   I  L K   +++A +        G++PD V
Sbjct: 529 LGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHV 588

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  +I G+  NG  + A +L  EM R +++P  +TY  L++G  + G++E+A +   +M
Sbjct: 589 TYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEM 648

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           K+RG++P+        +T+NAL+ G+CK    D A   L +M  +GI P+  +Y  LI  
Sbjct: 649 KKRGVRPN-------VMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISK 701

Query: 307 IASVDKAAE 315
               +K  E
Sbjct: 702 NCDFEKWEE 710



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 158/306 (51%), Gaps = 10/306 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK R ++    TY   ++G  K G++EEA R    M+ +G   T  ++N LI+GYC +G 
Sbjct: 301 MKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGL 360

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+   DEM+  GI PT STYN+ I  L    ++ +A ++L  M      PD ++YN 
Sbjct: 361 FDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMA----APDVVSYNT 416

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY + G   +A  L D++    I P+++TY +LI  L +   +  A +L E    + 
Sbjct: 417 LMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL 476

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +  L+ G   NGN+  A  +  EM R  + PD   Y T   G  R G  ++A 
Sbjct: 477 IFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAF 536

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL ++M    +  DH +  P    YN  I GLCK      A E  R++   G+ PD  TY
Sbjct: 537 RLHEEM----VATDHHA--PDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTY 590

Query: 301 FSLIEG 306
            ++I G
Sbjct: 591 TTVIRG 596



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 161/311 (51%), Gaps = 14/311 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++  + P   TY + + G+C+ G LE A R+ E+M    + P  +TY TL+ G+   GN
Sbjct: 437 LRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGN 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK---EM-GEKGIVPDSI 116
           L MA    DEM+++GI P    Y       + E ++ ++D   +   EM       PD  
Sbjct: 497 LSMATEVYDEMLRKGIKPDGYAYTT---RAVGELRLGDSDKAFRLHEEMVATDHHAPDLT 553

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            YN+ I+G C+ GN  KA     ++   G+ P  +TYT++I    +  +   A  L++  
Sbjct: 554 IYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEM 613

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           L K + P ++ +  LI GH   G +E+AF    EM +  V P+ +T+N L++G C+ G +
Sbjct: 614 LRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNI 673

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +EA R L +M+  GI P+       + +Y  LI   C  ++ +   +L +EM+ K I PD
Sbjct: 674 DEAYRYLCKMEEEGIPPN-------KYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPD 726

Query: 297 DNTYFSLIEGI 307
             T+ +L + +
Sbjct: 727 GYTHRALFKHL 737



 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 143/275 (52%), Gaps = 11/275 (4%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           + +AS + E M E+G++PT +T+NT++D     G+LE       EM ++ I  +  TYN+
Sbjct: 256 MNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNI 315

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+      KM EA     +M   G      ++N LI GYC+ G    A+ + DEM++ G
Sbjct: 316 LINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAG 375

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I PT  TY   I  L    R+ +A +L  +  A    PD+V +N L+ G+   G    A 
Sbjct: 376 IYPTTSTYNIYICALCDFGRIDDARELLSSMAA----PDVVSYNTLMHGYIKMGKFVEAS 431

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  ++    +HP  VTYNTL+ G C  G +E A+RL ++M  + I PD I       TY
Sbjct: 432 LLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVI-------TY 484

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L++G  KN    +A E+  EM+ KGI PD   Y
Sbjct: 485 TTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAY 519



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
            E+M   G +P+    N ++    +   +  A +  + M++ GIMPT  T+N ++     
Sbjct: 228 FEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFK 287

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
              +   D +  EM  + I    +TYNILING+ + G  ++A   H +M   G   T  +
Sbjct: 288 AGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYS 347

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           +  LI    KQ    +A  + +  L  G+ P    +N  I   C  G I+ A  LL  M 
Sbjct: 348 FNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM- 406

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
                PD V+YNTLMHG  + GK  EA  L D ++   I       +P+ +TYN LI GL
Sbjct: 407 ---AAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDI-------HPSIVTYNTLIDGL 456

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           C++   + A+ L  EM ++ I PD  TY +L++G  
Sbjct: 457 CESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFV 492



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 7/176 (3%)

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y +   A+K     ++MI KG  P++     ++ VL     M +A  ++E  +  G++P 
Sbjct: 215 YTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPT 274

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ FN ++D     G++ER   +  EM R  +   EVTYN L++G  + GK+EEARR   
Sbjct: 275 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHG 334

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            M+R G      SFNP       LI+G CK    D A  +  EM++ GI P  +TY
Sbjct: 335 DMRRSGFAVTPYSFNP-------LIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTY 383



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  TY + + G  + G+ + A  + ++M    L P+ +TY  LI G+   G LE A
Sbjct: 582 GLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQA 641

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F +  EM K+G+ P   T+N L++ +     + EA   L +M E+GI P+  +Y +LI+ 
Sbjct: 642 FQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISK 701

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
            C     ++   L+ EM+ K I+P   T+ +L   L K +  +  D 
Sbjct: 702 NCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKDHESMALDS 748


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 169/325 (52%), Gaps = 28/325 (8%)

Query: 13  YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           Y   VSG+C  G L+EA + LE M E G+ PT V +N++I  Y   G  E A+     MV
Sbjct: 327 YNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMV 386

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           K G+ P++ T + LI  L    ++ EA D+L EM  +G+  +   + +L++GY R G+  
Sbjct: 387 KFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVA 446

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
            A+SL +EM  +GI P  + +++ I  LS    + EA  +F     KG +P+  ++N+LI
Sbjct: 447 GAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLI 506

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
            G C +G ++ A  L +EM R  + PD  T N +++G C++G+++ A  +   M   G+ 
Sbjct: 507 RGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLI 566

Query: 253 PDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAEEL 284
           PD +++N                            P   TYN  + GLC  ++   A  +
Sbjct: 567 PDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMM 626

Query: 285 LREMVSKGITPDDNTYFSLIEGIAS 309
           L E++S G+ PD  TY +++ G+ +
Sbjct: 627 LEELISAGVVPDTVTYNTVMNGVCT 651



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 169/355 (47%), Gaps = 46/355 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P   T+G+ ++  C +G + EA  + + MKE G +P  V YNTL++GY    +
Sbjct: 210 MIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARD 269

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI--------------------------------- 87
           +  A    +EM  + + P  +T+N+L+                                 
Sbjct: 270 IGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNI 329

Query: 88  --HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
               L     + EA   L++M EKGI P  + +N +I  Y R G  +KA+  +  M+  G
Sbjct: 330 CVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFG 389

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P+ LT +SLI  LSK  R+ EA  L    + +G+  +   F  L+DG+   G++  A+
Sbjct: 390 LFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAY 449

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           SL  EM+   +HPD V ++  ++G    G V+EA  +  QM ++G       F P    Y
Sbjct: 450 SLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKG-------FMPNNFVY 502

Query: 266 NALIQGLCKNQEGDLAEELL--REMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           N+LI+G C +  G L E L+  REM  KG+ PD  T   +I G+    +   +S+
Sbjct: 503 NSLIRGFCNS--GRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASD 555



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 144/275 (52%), Gaps = 7/275 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P S T  S + G+ K  RL+EA  +L +M   GL      +  L+DGY   G+
Sbjct: 385 MVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGD 444

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A+S  +EM  +GI P A  ++  I+ L +   + EA D+  +M +KG +P++  YN 
Sbjct: 445 VAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNS 504

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G  ++A  L  EM  KG+ P + T   +I  L K+ RM  A  +F N    G
Sbjct: 505 LIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTG 564

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PDIV +N LIDG+C   +      ++ +M      PD  TYN  +HG C   K+  A 
Sbjct: 565 LIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAV 624

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
            +L+++   G+ PD +       TYN ++ G+C +
Sbjct: 625 MMLEELISAGVVPDTV-------TYNTVMNGVCTD 652



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 140/257 (54%), Gaps = 1/257 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ PD+  + +F++G+   G ++EA  +  QM + G +P    YN+LI G+CN G 
Sbjct: 455 MEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGR 514

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     EM ++G++P   T N++I+ L  E +M  A D+ + M   G++PD +TYN 
Sbjct: 515 LQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNT 574

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+  +      + ++M   G  P + TY   +  L    +M  A  + E  ++ G
Sbjct: 575 LIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAG 634

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V +N +++G CT+  +ERA  +  ++ +M   P+ VT N L+   C+QG  E+  
Sbjct: 635 VVPDTVTYNTVMNGVCTD-VLERAMIVTAKLLKMAFVPNVVTANLLLSHFCKQGMPEKTI 693

Query: 241 RLLDQMKRRGIKPDHIS 257
               ++       D IS
Sbjct: 694 MWGQKLNEISFGFDEIS 710



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 148/334 (44%), Gaps = 28/334 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G++P S         + + G      ++L  M   G  P    +N +I G+C KG+
Sbjct: 105 MREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGH 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++  S    M K    P    YN+LI+      +  +A   ++ M + G  P  +T+  
Sbjct: 165 VKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGT 224

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN +C  GN  +A +L D M   G  P ++ Y +L+    K   + +A+ L+E   +K 
Sbjct: 225 VINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKA 284

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   FN L+ GH   G  E    LL+++ +         YN  + G C  G ++EA 
Sbjct: 285 VAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAM 344

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           + L+ M  +GI P  ++FN                            P+ LT ++LI GL
Sbjct: 345 KFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGL 404

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            K      A +LL EM+ +G+  +   +  L++G
Sbjct: 405 SKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDG 438



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 126/277 (45%), Gaps = 7/277 (2%)

Query: 28  EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
           EA  ++ +M+E GL P++     L       G+    +     M+ QG  P    +N +I
Sbjct: 97  EALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVI 156

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
                +  +   + +L  M +    PD   YNILIN YC  G    A      MI  G  
Sbjct: 157 LGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCT 216

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P+++T+ ++I     Q  M+EA  LF+     G +P++V +N L++G+    +I +A  L
Sbjct: 217 PSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANML 276

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
            +EM    V PD  T+N L+ G  R G+ E+  RLL  +                  YN 
Sbjct: 277 YEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLS-------QSGSLSISSLYNI 329

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            + GLC     D A + L +M+ KGITP    + S+I
Sbjct: 330 CVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSII 366



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 7/226 (3%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S  + L+   L      EA +++  M E G+ P S    IL     R G+    + L   
Sbjct: 80  SVLDTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRG 139

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           MIH+G +P    + ++I    ++  +   + L          PD+  +N LI+ +CT G 
Sbjct: 140 MIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQ 199

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
              A   ++ M      P  VT+ T+++  C QG + EAR L D MK  G    HI   P
Sbjct: 200 TFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAG----HI---P 252

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             + YN L+ G  K ++   A  L  EM SK + PD  T+  L+ G
Sbjct: 253 NVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAG 298



 Score = 45.4 bits (106), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
           G+    + LL+ M      P    +N ++ G CR+G V+    LL  M++   +PD  + 
Sbjct: 128 GDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYA- 186

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
                 YN LI   C   +   A   +R M+  G TP   T+ ++I    +     E+ N
Sbjct: 187 ------YNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARN 240


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 172/346 (49%), Gaps = 45/346 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   PD YTY + + G+CKE R++EA  +L++M+  G  P+ V YN LIDG C KG+
Sbjct: 213 MPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGD 272

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D M  +G  P   TYN LIH L ++ K+ +A  +L+ M     +P+ +TY  
Sbjct: 273 LSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGT 332

Query: 121 LINGYCRC-----------------------------------GNAKKAFSLHDEMIHKG 145
           LING  +                                    G A++A +L  +M  KG
Sbjct: 333 LINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKG 392

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P ++ Y+++I  L ++ +  EA ++    ++ G LP++  +++L+ G    G  E A 
Sbjct: 393 CRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAI 452

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            + +EMD      +E  Y+ L+ G C  G+V+EA  +  +M   GIKPD ++       Y
Sbjct: 453 QVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVA-------Y 505

Query: 266 NALIQGLCKNQEGDLAEELLREMVSK---GITPDDNTYFSLIEGIA 308
           +++I+GLC     D A +L  EM+ +      PD  TY  L++G+ 
Sbjct: 506 SSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLC 551



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 155/311 (49%), Gaps = 7/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+  ++   +  +CK G ++ A  +   M E   +P   TY TL+DG C +  ++ A 
Sbjct: 183 ISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAV 242

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              DEM  +G  P+   YN+LI  L  +  +     ++  M  KG  P+ +TYN LI+G 
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGL 302

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G   KA SL + M+     P  +TY +LI  L KQ R ++  +L  +   +G   + 
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQ 362

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            +++ LI G    G  E A +L K+M      P+ V Y+ ++ G CR+GK  EA+ +L+ 
Sbjct: 363 HIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNG 422

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M   G  P+         TY++L++G  K    + A ++ REM   G + ++  Y  LI+
Sbjct: 423 MISSGCLPNV-------YTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLID 475

Query: 306 GIASVDKAAES 316
           G+  V +  E+
Sbjct: 476 GLCGVGRVKEA 486



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 167/405 (41%), Gaps = 87/405 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G  P    Y   + G+CK+G L   +++++ M   G  P  VTYNTLI G C KG 
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGK 307

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV----------------------- 97
           L+ A S  + MV    +P   TY  LI+ L+ +R+ +                       
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSV 367

Query: 98  ------------EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                       EA  + K+M EKG  P+ + Y+ +I+G CR G   +A  + + MI  G
Sbjct: 368 LISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSG 427

Query: 146 IQPTMLTYTSL-----------------------------------IFVLSKQNRMIEAD 170
             P + TY+SL                                   I  L    R+ EA 
Sbjct: 428 CLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAM 487

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM---DRMKVHPDEVTYNTLM 227
            ++   L  G+ PD V ++++I G C  G+++ A  L  EM   +  K  PD VTYN L+
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILL 547

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP--------------TRLTYNALIQGLC 273
            G C Q  V  A  LL+ M  RG  PD I+ N                R     L+  L 
Sbjct: 548 DGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVARLL 607

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           K Q    A +++  M+ K + P  +T+  ++  I    K   + N
Sbjct: 608 KRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPEICKPKKINAAIN 652



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 143/293 (48%), Gaps = 32/293 (10%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQG----IMPTASTYNLLIHELLMERKMVEADDM 102
           ++N++++   N+G       F D +V       I P   ++NL+I  L     +  A ++
Sbjct: 150 SFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEV 209

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
            + M EK  +PD  TY  L++G C+     +A  L DEM  +G  P+ + Y  LI  L K
Sbjct: 210 FRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           +  +    +L +N   KG  P+ V +N LI G C  G +++A SLL+ M   K  P++VT
Sbjct: 270 KGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HI------------------------- 256
           Y TL++G  +Q +  +  RLL  M+ RG + + HI                         
Sbjct: 330 YGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMA 389

Query: 257 --SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                P  + Y+A+I GLC+  + + A+E+L  M+S G  P+  TY SL++G 
Sbjct: 390 EKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGF 442



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 140/310 (45%), Gaps = 12/310 (3%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           T  S +      G      ++L +++    V    ++  +   Y      E A      M
Sbjct: 79  TLSSMIENYANLGDFASVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPEKAVDLFHRM 138

Query: 72  V-----KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           V     K+ +    S  N++I+E L  R +   D ++       I P+ +++N++I   C
Sbjct: 139 VDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALC 198

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A  +   M  K   P   TY +L+  L K+ R+ EA  L +   ++G  P  V
Sbjct: 199 KLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPV 258

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           ++N LIDG C  G++ R   L+  M      P+EVTYNTL+HG C +GK+++A  LL++M
Sbjct: 259 IYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERM 318

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                 P+ +       TY  LI GL K +       LL  M  +G   + + Y  LI G
Sbjct: 319 VSSKCIPNDV-------TYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISG 371

Query: 307 IASVDKAAES 316
           +    KA E+
Sbjct: 372 LFKEGKAEEA 381



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKG----IQPTMLTYTSLIFVLSKQNRMIEADQL 172
           ++N ++N     G   +    +D +++      I P  L++  +I  L K   +  A ++
Sbjct: 150 SFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEV 209

Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
           F     K  LPD   +  L+DG C    I+ A  LL EM      P  V YN L+ G C+
Sbjct: 210 FRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269

Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +G +    +L+D M  +G  P+ +       TYN LI GLC   + D A  LL  MVS  
Sbjct: 270 KGDLSRVTKLVDNMFLKGCFPNEV-------TYNTLIHGLCLKGKLDKAVSLLERMVSSK 322

Query: 293 ITPDDNTYFSLIEGIASVDKAAESS 317
             P+D TY +LI G+    +A + +
Sbjct: 323 CIPNDVTYGTLINGLVKQRRAMDGA 347


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 157/304 (51%), Gaps = 7/304 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D YTYG  ++G+CK G    A   L +M+E    P  V Y+T++DG C  G +  A +  
Sbjct: 181 DVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLC 240

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM  +G+ P   TY  LI  L    +  EA  +L EM + G+ PD    NIL++ +C+ 
Sbjct: 241 SEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKE 300

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G   +A S+   MI  G  P + TY SLI +   QN+M EA ++F   +++G LPDIV+F
Sbjct: 301 GKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVF 360

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            +LI G C + NI +A  LL+EM +M   PD  T+ TL+ G C+ G+   A+ L   M +
Sbjct: 361 TSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHK 420

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G  P+         T   ++ GLCK      A  L + M    +  +   Y  L++G+ 
Sbjct: 421 YGQVPN-------LQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMC 473

Query: 309 SVDK 312
           S  K
Sbjct: 474 SAGK 477



 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 161/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P+  TY   + G+C  GR +EA  +L++M + G+ P     N L+D +C +G 
Sbjct: 243 MNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGK 302

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    M+  G  P   TYN LIH   ++ KM EA  +   M  +G +PD + +  
Sbjct: 303 VMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTS 362

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+  N  KA  L +EM   G  P + T+T+LI    +  R + A +LF N    G
Sbjct: 363 LIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYG 422

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++     ++DG C    +  A SL K M++  +  + V Y+ L+ G C  GK+  A 
Sbjct: 423 QVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAW 482

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G++ +          Y  +I+GLCK    D AE+LL  M   G  P++ TY
Sbjct: 483 ELFSSLPGKGLQIN-------VYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTY 535

Query: 301 FSLIEGIASVDKAAES 316
              ++G+ +  + A S
Sbjct: 536 NVFVQGLLTKKEIARS 551



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 155/310 (50%), Gaps = 7/310 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G++ D+ T    ++ +C+   +     +L  M + GL PT +T  TLI+G C +GN+ 
Sbjct: 105 SLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVA 164

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    D M K        TY +LI+ L      + A   L++M E+   P+ + Y+ ++
Sbjct: 165 QAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIM 224

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G C+ G   +A +L  EM  KG++P ++TY  LI  L    R  EA  L +  +  GM 
Sbjct: 225 DGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMR 284

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+ M N L+D  C  G + +A S++  M      PD  TYN+L+H  C Q K+ EA R+
Sbjct: 285 PDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRV 344

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              M  RG  PD + F        +LI G CK++  + A  LL EM   G  PD  T+ +
Sbjct: 345 FHLMVSRGRLPDIVVF-------TSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTT 397

Query: 303 LIEGIASVDK 312
           LI G     +
Sbjct: 398 LIGGFCQAGR 407



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 8/260 (3%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITY 118
           N++ A      M +   +P+   + LL+  ++  +    A  ++K M    GI  D+IT 
Sbjct: 56  NIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITL 115

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NI+IN  CR       FS+   M   G++PT++T T+LI  L  Q  + +A  L ++   
Sbjct: 116 NIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEK 175

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
                D+  +  LI+G C  G+   A   L++M+     P+ V Y+T+M G C+ G V E
Sbjct: 176 MWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSE 235

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  L  +M  +G++P+ +       TY  LIQGLC       A  LL EM+  G+ PD  
Sbjct: 236 ALNLCSEMNGKGVRPNLV-------TYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQ 288

Query: 299 TYFSLIEGIASVDKAAESSN 318
               L++      K  ++ +
Sbjct: 289 MLNILVDAFCKEGKVMQAKS 308



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 121/250 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD +TY S +   C + ++ EA R+   M   G +P  V + +LI G+C   N+  A
Sbjct: 317 GEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKA 376

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM K G +P  +T+  LI       + + A ++   M + G VP+  T  ++++G
Sbjct: 377 MHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDG 436

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A SL   M    +   ++ Y+ L+  +    ++  A +LF +   KG+  +
Sbjct: 437 LCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQIN 496

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           + ++  +I G C  G++++A  LL  M+     P+  TYN  + G   + ++  + + L 
Sbjct: 497 VYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLT 556

Query: 245 QMKRRGIKPD 254
            M+ +G   D
Sbjct: 557 IMRDKGFSVD 566



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 103/222 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD   + S + G CK+  + +A  +LE+M + G VP   T+ TLI G+C  G 
Sbjct: 348 MVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGR 407

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M K G +P   T  +++  L  E  + EA  + K M +  +  + + Y+I
Sbjct: 408 PLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSI 467

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G    A+ L   +  KG+Q  +  YT +I  L KQ  + +A+ L  N    G
Sbjct: 468 LLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENG 527

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
            LP+   +N  + G  T   I R+   L  M       D  T
Sbjct: 528 CLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAAT 569


>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 566

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 163/335 (48%), Gaps = 27/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD+ +Y   VS +C++G +  A +++++M+E G     VTYN+L+ G C  GN
Sbjct: 123 MIGSGIIPDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGN 182

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  +    D ++++G++P A TY+ L+     ER   EA  +L E+  KG  P+ ++YN+
Sbjct: 183 LTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNV 242

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+ G  + A  L  E+  KG  P +++Y  L+  L  + R  EA+ L        
Sbjct: 243 LLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDE 302

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  V +N LI     +G  E A  +L+EM R +  P   +YN ++   C+ GK++   
Sbjct: 303 RSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVV 362

Query: 241 RLLDQMKRRGIKPDHISFNP---------------------------TRLTYNALIQGLC 273
           + LDQM  R   P+  ++N                            T+  Y  +I  LC
Sbjct: 363 KCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLC 422

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +      A +LL EM   G TPD  TY SLI G+ 
Sbjct: 423 RKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLC 457



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 159/300 (53%), Gaps = 7/300 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +PD +     +  +CK  ++ +A +++E M  +G++P A +Y  L+   C KGN
Sbjct: 88  MVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDASSYTFLVSSLCRKGN 147

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D+M + G      TYN L+  L M   + ++  +L  + +KG+VP++ TY+ 
Sbjct: 148 VGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSF 207

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+    +   A +A  L DE+I KG +P +++Y  L+  L K+ R  +A +LF    +KG
Sbjct: 208 LLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKG 267

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +N L+   C  G  E A  LL EM+  +  P  VTYN L+      G+ E A 
Sbjct: 268 FSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHAL 327

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L++M R         F PT  +YN +I  LCK+ + DL  + L +M+ +   P++ TY
Sbjct: 328 EVLEEMIRA-------RFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTY 380



 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 153/305 (50%), Gaps = 9/305 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G +P+  +Y   ++G+CKEGR E+A R+  ++   G  P  V+YN L+   CN+G  E
Sbjct: 230 AKGGEPNLVSYNVLLTGLCKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWE 289

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM      P+  TYN+LI  L +  +   A ++L+EM      P + +YN +I
Sbjct: 290 EANVLLAEMNGDERSPSTVTYNILIGSLALHGRTEHALEVLEEMIRARFKPTASSYNPII 349

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
              C+ G         D+M+++   P   TY + I  L ++  + EA  + ++   K   
Sbjct: 350 AHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYNA-IATLCEEGMVQEAFSIIQSLGNKQHS 408

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
                +  +I   C  GN   AF LL EM +    PD  TY++L+ G C +G + EA  +
Sbjct: 409 STQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEI 468

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              M+    KPD  +       YN+LI G CK++  DLA ++   MV KG  P++ TY  
Sbjct: 469 FSVMEENN-KPDTEN-------YNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTI 520

Query: 303 LIEGI 307
           L+EGI
Sbjct: 521 LVEGI 525



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 7/245 (2%)

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           AF   + MV++G  P       L+++L    KM +A  +++ M   GI+PD+ +Y  L++
Sbjct: 81  AFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDASSYTFLVS 140

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             CR GN   A  L D+M   G     +TY SL+  L     + ++ QL +  + KG++P
Sbjct: 141 SLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVP 200

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +   ++ L++        + A  LL E+      P+ V+YN L+ G C++G+ E+A RL 
Sbjct: 201 NAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEDAIRLF 260

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            ++  +G       F+P  ++YN L++ LC     + A  LL EM     +P   TY  L
Sbjct: 261 RELPSKG-------FSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNIL 313

Query: 304 IEGIA 308
           I  +A
Sbjct: 314 IGSLA 318



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 129/285 (45%), Gaps = 35/285 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G  P+  +Y   +  +C EGR EEA+ +L +M  +   P+ VTYN LI      G 
Sbjct: 263 LPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMNGDERSPSTVTYNILIGSLALHGR 322

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
            E A    +EM++    PTAS+YN +I  L                              
Sbjct: 323 TEHALEVLEEMIRARFKPTASSYNPIIAHLCKDGKLDLVVKCLDQMMYRHCNPNEGTYNA 382

Query: 91  ---LMERKMV-EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
              L E  MV EA  +++ +G K        Y I+I   CR GN   AF L  EM   G 
Sbjct: 383 IATLCEEGMVQEAFSIIQSLGNKQHSSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGF 442

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P   TY+SLI  L  +  + EA ++F + + +   PD   +N+LI G C +   + A  
Sbjct: 443 TPDSFTYSSLIRGLCMEGMLNEAIEIF-SVMEENNKPDTENYNSLILGCCKSRRTDLALD 501

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           + + M      P+E TY  L+ G   + +++ A ++L +++ R +
Sbjct: 502 VFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLRELQLRDV 546



 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 93  ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           E ++ +A   L+ M EKG  PD      L+   C+    +KA  + + MI  GI P   +
Sbjct: 75  ELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDASS 134

Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
           YT L+  L ++  +  A QL +     G   + V +N+L+ G C +GN+ ++  LL  + 
Sbjct: 135 YTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLI 194

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
           +  + P+  TY+ L+    ++   +EA +LLD++  +G +P+ +S       YN L+ GL
Sbjct: 195 QKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVS-------YNVLLTGL 247

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           CK    + A  L RE+ SKG +P+  +Y  L+  + +  +  E++
Sbjct: 248 CKEGRTEDAIRLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEAN 292



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDS+TY S + G+C EG L EA  +   M+EN   P    YN+LI G C    
Sbjct: 437 MTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENN-KPDTENYNSLILGCCKSRR 495

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            ++A    + MV +G +P  +TY +L+  ++ E++M  A  +L+E+  + ++  S
Sbjct: 496 TDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATKVLRELQLRDVISQS 550



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
           SK+ R+ +A    E  + KG  PD+     L+   C    + +A  +++ M    + PD 
Sbjct: 73  SKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDA 132

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            +Y  L+   CR+G V  A +L+D+M+  G   + +       TYN+L++GLC +     
Sbjct: 133 SSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTV-------TYNSLVRGLCMHGNLTQ 185

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           + +LL  ++ KG+ P+  TY  L+E       A E+S
Sbjct: 186 SLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAS 222



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 41/82 (50%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD+  Y S + G CK  R + A  + E M   G +P   TY  L++G  ++  +++A  
Sbjct: 477 KPDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGIIHEKEMDLATK 536

Query: 67  FRDEMVKQGIMPTASTYNLLIH 88
              E+  + ++  ++   L++ 
Sbjct: 537 VLRELQLRDVISQSTLERLVMQ 558


>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 376

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 156/295 (52%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  + G CK G + ++  +LE  +  G V  A  Y+ +I+G C +  
Sbjct: 85  MKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYSAMINGLCKEAK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+  +   K  +A  + +EMG     P  +TY+ 
Sbjct: 145 LDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG +P ++TY+ L+  L + +++  A QL+   L+KG
Sbjct: 205 LINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G  + A  L  +M+     P+ VT+NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD IS+N T       ++GLC       A   L + ++K I P
Sbjct: 325 VIWARILRSGLQPDIISYNIT-------LKGLCSCNRISFAILFLHDALTKKIFP 372



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 146/306 (47%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V PD+  Y + + G  + GR+++   + E M   G     V++N ++ G  + G 
Sbjct: 16  MAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKG-SQNVVSFNIMMRGLFDNGE 74

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  + M K G +  + TY ++I        + ++  +L+    KG V D+  Y+ 
Sbjct: 75  VDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYSA 134

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     KA S+ + MI  G +P    Y +LI      ++  +A ++F    +  
Sbjct: 135 MINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMD 194

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P IV ++ LI+G C       A+ L+KEM      P  +TY+ LM G C+  KVE A 
Sbjct: 195 CSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMAL 254

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L +Q+  +G KPD          +N LI GLC   +   A  L  +M      P+  T+
Sbjct: 255 QLWNQVLSKGFKPD-------VQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTH 307

Query: 301 FSLIEG 306
            +L+EG
Sbjct: 308 NTLMEG 313



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 141/293 (48%), Gaps = 43/293 (14%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+  +M E+ + P AV YN ++ G+   G ++  F   + M ++G     
Sbjct: 1   CESGDIDGAKRVYMEMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKGSQNVV 60

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S +N+++  L    ++ +A  + + M + G V DSITY I+I+G+C+ G   K  SLH  
Sbjct: 61  S-FNIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINK--SLHVL 117

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
            I +G                                 KG + D   ++A+I+G C    
Sbjct: 118 EIAEG---------------------------------KGGVLDAFAYSAMINGLCKEAK 144

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +++A S+L  M +    P+   YNTL++G     K ++A R+  +M         +  +P
Sbjct: 145 LDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGS-------MDCSP 197

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           T +TY+ LI GLCK +    A +L++EM+ KG  P   TY  L++G+    K 
Sbjct: 198 TIVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKV 250



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 109/222 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G     + ++A R+  +M      PT VTY+TLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHTLINGLCKGER 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G  P   TY+LL+  L    K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A  L+ +M H    P ++T+ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILRSG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+ P  +T
Sbjct: 335 LQPDIISYNITLKGLCSCNRISFAILFLHDALTKKIFPTIIT 376



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 10/213 (4%)

Query: 105 EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
           EM E  + PD++ YN ++ G+ R G  K  F L + M  KG Q  ++++  ++  L    
Sbjct: 15  EMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKGSQ-NVVSFNIMMRGLFDNG 73

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
            + +A  ++E     G + D + +  +IDG C NG I ++  +L+  +      D   Y+
Sbjct: 74  EVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYS 133

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEE 283
            +++G C++ K+++A  +L+ M + G KP+ H+        YN LI G     + D A  
Sbjct: 134 AMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHV--------YNTLINGFVGASKFDDAIR 185

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + REM S   +P   TY +LI G+   ++ +E+
Sbjct: 186 VFREMGSMDCSPTIVTYHTLINGLCKGERFSEA 218


>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g22960, mitochondrial; Flags: Precursor
 gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 718

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 161/309 (52%), Gaps = 8/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  +Y + + G  K G+  EAS + + ++   + P+ VTYNTLIDG C  GNLE A   
Sbjct: 372 PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRL 431

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
           ++EM  Q I P   TY  L+   +    +  A ++  EM  KGI PD   Y     G  R
Sbjct: 432 KEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELR 491

Query: 128 CGNAKKAFSLHDEMIHKGIQ-PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
            G++ KAF LH+EM+      P +  Y   I  L K   +++A +        G++PD V
Sbjct: 492 LGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHV 551

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  +I G+  NG  + A +L  EM R +++P  +TY  L++G  + G++E+A +   +M
Sbjct: 552 TYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEM 611

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           K+RG++P+        +T+NAL+ G+CK    D A   L +M  +GI P+  +Y  LI  
Sbjct: 612 KKRGVRPN-------VMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISK 664

Query: 307 IASVDKAAE 315
               +K  E
Sbjct: 665 NCDFEKWEE 673



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 158/306 (51%), Gaps = 10/306 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK R ++    TY   ++G  K G++EEA R    M+ +G   T  ++N LI+GYC +G 
Sbjct: 264 MKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGL 323

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A+   DEM+  GI PT STYN+ I  L    ++ +A ++L  M      PD ++YN 
Sbjct: 324 FDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMA----APDVVSYNT 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY + G   +A  L D++    I P+++TY +LI  L +   +  A +L E    + 
Sbjct: 380 LMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL 439

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +  L+ G   NGN+  A  +  EM R  + PD   Y T   G  R G  ++A 
Sbjct: 440 IFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAF 499

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RL ++M    +  DH +  P    YN  I GLCK      A E  R++   G+ PD  TY
Sbjct: 500 RLHEEM----VATDHHA--PDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTY 553

Query: 301 FSLIEG 306
            ++I G
Sbjct: 554 TTVIRG 559



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 163/312 (52%), Gaps = 16/312 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++  + P   TY + + G+C+ G LE A R+ E+M    + P  +TY TL+ G+   GN
Sbjct: 400 LRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGN 459

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-----PDS 115
           L MA    DEM+++GI P    Y       + E ++ ++D   + + E+ +      PD 
Sbjct: 460 LSMATEVYDEMLRKGIKPDGYAYTT---RAVGELRLGDSDKAFR-LHEEMVATDHHAPDL 515

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
             YN+ I+G C+ GN  KA     ++   G+ P  +TYT++I    +  +   A  L++ 
Sbjct: 516 TIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDE 575

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            L K + P ++ +  LI GH   G +E+AF    EM +  V P+ +T+N L++G C+ G 
Sbjct: 576 MLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGN 635

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           ++EA R L +M+  GI P+       + +Y  LI   C  ++ +   +L +EM+ K I P
Sbjct: 636 IDEAYRYLCKMEEEGIPPN-------KYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEP 688

Query: 296 DDNTYFSLIEGI 307
           D  T+ +L + +
Sbjct: 689 DGYTHRALFKHL 700



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 143/275 (52%), Gaps = 11/275 (4%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
           + +AS + E M E+G++PT +T+NT++D     G+LE       EM ++ I  +  TYN+
Sbjct: 219 MNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNI 278

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI+      KM EA     +M   G      ++N LI GYC+ G    A+ + DEM++ G
Sbjct: 279 LINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAG 338

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I PT  TY   I  L    R+ +A +L  +  A    PD+V +N L+ G+   G    A 
Sbjct: 339 IYPTTSTYNIYICALCDFGRIDDARELLSSMAA----PDVVSYNTLMHGYIKMGKFVEAS 394

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  ++    +HP  VTYNTL+ G C  G +E A+RL ++M  + I PD I       TY
Sbjct: 395 LLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVI-------TY 447

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L++G  KN    +A E+  EM+ KGI PD   Y
Sbjct: 448 TTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAY 482



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 130/268 (48%), Gaps = 32/268 (11%)

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           ++M+++G +P+    N+++  L   R M +A  + + M E GI+P  IT+N +++   + 
Sbjct: 192 EKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKA 251

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G+ ++   +  EM  + I+ + +TY  LI   SK  +M EA +   +    G       F
Sbjct: 252 GDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSF 311

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LI+G+C  G  + A+ +  EM    ++P   TYN  +   C  G++++AR LL  M  
Sbjct: 312 NPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMA- 370

Query: 249 RGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDL 280
               PD +S+N                            P+ +TYN LI GLC++   + 
Sbjct: 371 ---APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEG 427

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIA 308
           A+ L  EM ++ I PD  TY +L++G  
Sbjct: 428 AQRLKEEMTTQLIFPDVITYTTLVKGFV 455



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 7/176 (3%)

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y +   A+K     ++MI KG  P++     ++ VL     M +A  ++E  +  G++P 
Sbjct: 178 YTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPT 237

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ FN ++D     G++ER   +  EM R  +   EVTYN L++G  + GK+EEARR   
Sbjct: 238 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHG 297

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            M+R G      SFNP       LI+G CK    D A  +  EM++ GI P  +TY
Sbjct: 298 DMRRSGFAVTPYSFNP-------LIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTY 346


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 170/312 (54%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P  YT    +  + KE ++       ++M    + P   T+N LI+  C +G 
Sbjct: 124 MGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGK 183

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A     +M + G +P+  TYN +++    + +   A +++ +MG KGI  D+ TYN+
Sbjct: 184 LKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNM 243

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+   + K + L  +M  + I P  +TY S+I    K+ ++  A ++F+      
Sbjct: 244 LVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLN 303

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP+ V +NALIDGHC +GN E+A ++L+ M+     P+EV+Y+ L++G CR  K E ++
Sbjct: 304 LLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSK 363

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L++M+  G+    I+       Y A+I GLC+N   + + +LL +M+  G+ PD  T+
Sbjct: 364 SILERMRMNGMIVGCIA-------YTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTF 416

Query: 301 FSLIEGIASVDK 312
             LI G   V K
Sbjct: 417 SVLINGFCRVGK 428



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 182/369 (49%), Gaps = 63/369 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R V PD  T+   ++ +C EG+L++A  +L++M+E+G VP+ VTYNT+++ YC KG 
Sbjct: 159 MLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGR 218

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL--------------MERKMVE-------- 98
            + A    D+M  +GI   A TYN+L+ +L               M ++M+         
Sbjct: 219 YKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNS 278

Query: 99  -------------ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                        A  + +EM    ++P+ +TYN LI+G+C  GN ++A ++ + M   G
Sbjct: 279 IINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATG 338

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P  ++Y++L+  L +  +   +  + E     GM+   + + A+IDG C NG +  + 
Sbjct: 339 PKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESV 398

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP----- 260
            LL +M +  V PD VT++ L++G CR GK++  + ++ +M + G+ P+ I +       
Sbjct: 399 KLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNY 458

Query: 261 ----------------TRLTY-------NALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                           +R+ Y       N L+  LCK+ +  +AE     M   G  P+ 
Sbjct: 459 CKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNS 518

Query: 298 NTYFSLIEG 306
            T+  +I G
Sbjct: 519 ITFDCIING 527



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 161/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G +P+  +Y + ++G+C+  + E +  +LE+M+ NG++   + Y  +IDG C  G 
Sbjct: 334 MEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGL 393

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  +    D+M+K G++P   T+++LI+      K+    +++ +M + G+ P+SI Y  
Sbjct: 394 LNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTT 453

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  YC+ G+  +AF ++  M   G          L+  L K  ++  A+  F +    G
Sbjct: 454 LIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIG 513

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P+ + F+ +I+G+  +GN  +AFS+  EM +   HP   TY  L+   CR GK +EA+
Sbjct: 514 NVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAK 573

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           RLLD++        +I      +TYN ++    K+     A  L  EMV + + PD  TY
Sbjct: 574 RLLDKLH-------YIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTY 626

Query: 301 FSLIEGI 307
             +  G+
Sbjct: 627 AIIFAGL 633



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 6/318 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD  T+   ++G C+ G+++    ++ +M + GL P ++ Y TLI  YC  G+
Sbjct: 404 MLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGD 463

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF     M + G        N+L+  L  + K+  A+     M + G VP+SIT++ 
Sbjct: 464 VVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDC 523

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +INGY   GN  KAFS+ DEMI  G  P+  TY  L+  L +  +  EA +L +      
Sbjct: 524 IINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIP 583

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D V +N ++     +G +  A +L  EM +  V PD  TY  +  G  R+GK+  A 
Sbjct: 584 SAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAAL 643

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                +  +G      + +P ++ Y   + GL +  +   A     +M   G+  D    
Sbjct: 644 HFYGNLLGKG------AVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIAT 697

Query: 301 FSLIEGIASVDKAAESSN 318
             ++ G + + K A++ +
Sbjct: 698 NVILNGYSRMGKMAKAGD 715



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 160/353 (45%), Gaps = 44/353 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G   + +     VS +CK+G++  A      M + G VP ++T++ +I+GY N GN
Sbjct: 474 MSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGN 533

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AFS  DEM+K G  P+  TY  L+  L    K  EA  +L ++       D++TYN 
Sbjct: 534 GLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNT 593

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++    + G    A +L DEM+ + + P   TY  +   L ++ +M+ A   + N L KG
Sbjct: 594 ILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKG 653

Query: 181 ML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDR-------------------------- 213
            + P+ VM+   +DG    G  + A    ++M++                          
Sbjct: 654 AVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKA 713

Query: 214 ----------MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
                     + + P   TYN L+HG  ++  + +   L + M R GI PD       +L
Sbjct: 714 GDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPD-------KL 766

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           T ++LI G CK+   D+  +LL++M+  G+  D  T+  LI      D+  ++
Sbjct: 767 TCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKA 819



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 149/318 (46%), Gaps = 9/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M  R V PDSYTY    +G+ + G++  A      +   G V P  V Y T +DG    G
Sbjct: 614 MVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAG 673

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITY 118
             + A  F ++M K G+       N++++      KM +A D+   M     I P   TY
Sbjct: 674 QSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATY 733

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           NIL++GY +  N  K  +L++ M+  GI P  LT  SLI    K   +    +L +  L 
Sbjct: 734 NILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLL 793

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+  D   FN LI  +C    + +AF L+  M+   + PD  T+++++    R   V+E
Sbjct: 794 DGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQE 853

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           +  LL +M  RG  PD       R  Y AL+  +C+      A +L  EM + GI+  D 
Sbjct: 854 SHLLLHEMLERGCIPD-------RRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDV 906

Query: 299 TYFSLIEGIASVDKAAES 316
              +L+ G+A   K  E+
Sbjct: 907 AESALVRGLAKCGKVEEA 924



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 138/262 (52%), Gaps = 7/262 (2%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            ++ LI  Y  +G +  A      M  +G  P+  T N+L+ +L+ ERK+       KEM
Sbjct: 100 VFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEM 159

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
             + + PD  T+NILIN  C  G  KKA  L  +M   G  P+++TY +++    K+ R 
Sbjct: 160 LARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRY 219

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             A +L +   +KG+  D   +N L+D  C N    + + LLK+M +  + P+E+TYN++
Sbjct: 220 KAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSI 279

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           ++G  ++GK+  A R+  +M    + P+ +       TYNALI G C +   + A  +L 
Sbjct: 280 INGFVKEGKIGAATRIFQEMSMLNLLPNCV-------TYNALIDGHCHDGNFEQALTILE 332

Query: 287 EMVSKGITPDDNTYFSLIEGIA 308
            M + G  P++ +Y +L+ G+ 
Sbjct: 333 MMEATGPKPNEVSYSALLNGLC 354



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 144/295 (48%), Gaps = 10/295 (3%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            M   G+ PD  T  S + G CK   L+   ++L++M  +G+     T+N LI  YC    
Sbjct: 756  MMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDE 815

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  AF   + M    I P  +T++ +I  L     + E+  +L EM E+G +PD   Y  
Sbjct: 816  VGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIA 875

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+N  CR G+   AF L DEM   GI    +  ++L+  L+K  ++ EA  + +  L K 
Sbjct: 876  LVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKS 935

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            ++P I  F  L+   C N ++  A  L   MD   V  D + YN L+ G C  G V  A 
Sbjct: 936  LIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASAL 995

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA--EELLREMVSKGI 293
            +L  ++K+RG+ P+         TY  LI  +  N +  LA  E LL+++  +G+
Sbjct: 996  KLYKEIKQRGLWPNMT-------TYCILIDAIFTN-DISLAKGEVLLKDLQERGV 1042



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 160/379 (42%), Gaps = 80/379 (21%)

Query: 5    GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
             V P+   Y +FV G+ + G+ + A    E M++NGL    +  N +++GY   G +  A
Sbjct: 654  AVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKA 713

Query: 65   FSFRDEMVKQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT----- 117
                  M+  GI   P+ +TYN+L+H    ++ + +  ++   M   GI PD +T     
Sbjct: 714  GDIF-TMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLI 772

Query: 118  ------------------------------YNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
                                          +N+LI  YC      KAF L + M    I 
Sbjct: 773  LGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIF 832

Query: 148  PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
            P M T+ S+I VLS+ + + E+  L    L +G +PD   + AL++  C  G+I  AF L
Sbjct: 833  PDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKL 892

Query: 208  LKEMD-----------------------------------RMKVHPDEVTYNTLMHGRCR 232
              EM+                                   R  + P   T+ TLMH  CR
Sbjct: 893  KDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCR 952

Query: 233  QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
               + EA +L D M    +K D I+       YN LI GLC + +   A +L +E+  +G
Sbjct: 953  NESLVEALKLKDTMDFCDVKLDVIA-------YNVLISGLCADGDVASALKLYKEIKQRG 1005

Query: 293  ITPDDNTYFSLIEGIASVD 311
            + P+  TY  LI+ I + D
Sbjct: 1006 LWPNMTTYCILIDAIFTND 1024



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 29/257 (11%)

Query: 62  EMAFSFRDEMVKQ-GIMPTASTYNLLI--HELLMERKMVEADDMLKEMGEKGIVPDSITY 118
            +A  F + +++Q G+     T+ L I  H L+  R    A  +LK + + G+   S+ +
Sbjct: 26  RLALKFLNWVIQQPGLELRHLTHMLSITTHILVRARLYENAKSILKHLSQMGVGSKSV-F 84

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
             L+N Y  C +    F L                  LI V  ++  + +A + F     
Sbjct: 85  GALMNTYPLCKSNPSVFDL------------------LIRVYLREGMVGDALETFRLMGI 126

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G  P +   N L+        +   +   KEM   +V PD  T+N L++  C +GK+++
Sbjct: 127 RGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKK 186

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  LL +M+  G       + P+ +TYN ++   CK      A EL+ +M SKGI  D  
Sbjct: 187 AGYLLKKMEESG-------YVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADAC 239

Query: 299 TYFSLIEGIASVDKAAE 315
           TY  L++ +   +++A+
Sbjct: 240 TYNMLVDDLCKNNRSAK 256


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 167/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLR 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P   +YN
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G   + F L   M   G+QP + TY+ LI  L K++ M + ++LF+  L K
Sbjct: 182 TLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL +G C++G + +A
Sbjct: 242 GLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 HGLIDEMSMKGLKPD-------KFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVA 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSXDA 371



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P   +YNTL++GY   G L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E  M + +++  EM  KG+VP+S+T+  LI+G
Sbjct: 197 FRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P  +TY +L + L K+  + +A  L +    KG+ PD
Sbjct: 257 HCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G+KPD         TY  +I   CK  +     + L+EM   G  P   TY  L+
Sbjct: 377 EMLSVGLKPD-------XGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 129/229 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+ KE  +++ + + ++M   GLVP +VT+ TLIDG+C  G 
Sbjct: 203 MXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN L + L  +  + +A  ++ EM  KG+ PD  TY  
Sbjct: 263 VDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I    + YT+LI  L ++ R  +A+++    L+ G
Sbjct: 323 LIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVG 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +    LKEM R    P  VTYN LM+G
Sbjct: 383 LKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLMNG 431


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 166/314 (52%), Gaps = 7/314 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   D  +YG+ + G+CK G    A  +L+++    +   AV YNT+I G C   ++  A
Sbjct: 37  GFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDA 96

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F    EMV +GI P   TY+ LI    +  K+ +A D+  ++  + I PD  T+NIL++G
Sbjct: 97  FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDG 156

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+    K+  ++   M+ +GI P ++TY SL+        +  A  +F      G+ PD
Sbjct: 157 FCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPD 216

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I  +N LI+G C    +++A +L  EM    + P+ VTYN+L+ G  + G++  A +L+D
Sbjct: 217 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVD 276

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           QM  RG+ P+        LTYN++I  L K  + D A  L+ +   +GI P   TY  LI
Sbjct: 277 QMHDRGVPPN-------ILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILI 329

Query: 305 EGIASVDKAAESSN 318
           +G+    +  ++ N
Sbjct: 330 DGLCKGGRLKDARN 343



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 167/312 (53%), Gaps = 10/312 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P++ T  + + G+C +G++ +A    +++   G     V+Y TLI G C  G    A
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 +  + +   A  YN +I+ +  ++ + +A D+  EM  KGI P+ +TY+ LI+G
Sbjct: 62  LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +   G  K A  L +++I + I+P   T+  L+    K  +M E   +F   + +G++PD
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD 181

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N+L+DG+     +  A S+   M +  V+PD  +YN L++G C+  KV++A  L +
Sbjct: 182 VVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFN 241

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  + I P+ +       TYN+LI GL K+     A +L+ +M  +G+ P+  TY S+I
Sbjct: 242 EMHCKNIIPNVV-------TYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSII 294

Query: 305 EGI---ASVDKA 313
           + +     VDKA
Sbjct: 295 DALFKTHQVDKA 306



 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 138/246 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G+ P+  TY + +SG    G+L++A  +  ++    + P   T+N L+DG+C    
Sbjct: 103 MVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRK 162

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++   +    M+KQGI+P   TYN L+    + +++  A  +   M + G+ PD  +YNI
Sbjct: 163 MKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNI 222

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     KA +L +EM  K I P ++TY SLI  LSK  R+  A QL +    +G
Sbjct: 223 LINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRG 282

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I+ +N++ID       +++A +L+ +     + P   TY  L+ G C+ G++++AR
Sbjct: 283 VPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDAR 342

Query: 241 RLLDQM 246
            + + +
Sbjct: 343 NIFEDL 348



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 28/131 (21%)

Query: 214 MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP----------TR- 262
           M  HP+ +T NTL+ G C +G++ +A    D++   G   D +S+            TR 
Sbjct: 1   MGYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRA 60

Query: 263 -----------------LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
                            + YN +I G+CK++  + A +L  EMVSKGI+P+  TY +LI 
Sbjct: 61  ALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALIS 120

Query: 306 GIASVDKAAES 316
           G   V K  ++
Sbjct: 121 GFFVVGKLKDA 131


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 7/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P    Y + + GMCKEGR+E A ++L +M +NG+ P  V+Y+ +I+  C  GN+E+AF+
Sbjct: 241 KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFA 300

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M  +G      T+  LI    M  K+ EA D+ K M + G  P+ + YN LI+G C
Sbjct: 301 LFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC 360

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G+ ++A  + D+M   G  P + TY+ LI   +K   ++ A + +   ++ G  P++V
Sbjct: 361 SNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVV 420

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  ++D  C N   ++A SL+++M      P+ +T+NT + G C  G+VE A +LL++M
Sbjct: 421 TYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +  G  P+         TYN L+  L +  + + A  L +E+ ++ + P+  TY +++ G
Sbjct: 481 QGHGCLPNIT-------TYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG 533

Query: 307 IASVDKAAES 316
            +      E+
Sbjct: 534 FSRAGMMGEA 543



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 6/304 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+   Y + + G+C  G LEEA ++ +QM+ +G +P   TY+ LIDG+   G+
Sbjct: 340 MIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD 399

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    + M+  G  P   TY  ++  L       +A+ ++++M  +G  P+++T+N 
Sbjct: 400 LVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNT 459

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G C  G  + A  L + M   G  P + TY  L+  L + N+  EA  LF+   A+ 
Sbjct: 460 FIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARN 519

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V +N ++ G    G +  A  L  +       PD +TYNT++H  C+QGKV+ A 
Sbjct: 520 LQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAA 579

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L++++    +K  H    P  +TY +LI G C     + A   L + +++GI P+  T+
Sbjct: 580 QLVERVS--SMKEWH----PDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATW 633

Query: 301 FSLI 304
            +L+
Sbjct: 634 NALV 637



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 153/304 (50%), Gaps = 8/304 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG   + +T+   + G    G+L EA  + + M ++G  P  V YNTLI G C+ G+LE 
Sbjct: 308 RGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEE 367

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    D+M + G +P  +TY++LI        +V A +    M   G  P+ +TY  +++
Sbjct: 368 ALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVD 427

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             C+     +A SL ++M  +G  P  +T+ + I  L    R+  A +L E     G LP
Sbjct: 428 VLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLP 487

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +I  +N L+D        E AF L +E++   + P+ VTYNT+++G  R G + EA +L 
Sbjct: 488 NITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLF 547

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS-KGITPDDNTYFS 302
            +   RG  PD I       TYN +I   CK  +  +A +L+  + S K   PD  TY S
Sbjct: 548 GKALVRGTAPDSI-------TYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTS 600

Query: 303 LIEG 306
           LI G
Sbjct: 601 LIWG 604



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 158/366 (43%), Gaps = 58/366 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+      +   ++G  + G  E+A +M  ++ E G  PT   YN L+D   ++  
Sbjct: 100 MKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENK 159

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--- 117
            +M       M K G++P   TYN+L+  L    ++  A  +  EM  KG  PD++T   
Sbjct: 160 FQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTT 219

Query: 118 ---------------------------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
                                      YN LI+G C+ G  + A  L  EM+  G+ P +
Sbjct: 220 MVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNV 279

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++Y+ +I  L     +  A  LF     +G   +I  F  LI G    G +  A  L K 
Sbjct: 280 VSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKL 339

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------- 259
           M +    P+ V YNTL+HG C  G +EEA ++ DQM+R G  P+  +++           
Sbjct: 340 MIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD 399

Query: 260 -----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
                            P  +TY  ++  LCKN   D A  L+ +M  +G TP+  T+ +
Sbjct: 400 LVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNT 459

Query: 303 LIEGIA 308
            I+G+ 
Sbjct: 460 FIKGLC 465



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 152/334 (45%), Gaps = 33/334 (9%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S   Q  + TY   +  + +E  ++    +L+QMK +G+      +  +I+GY   G+ E
Sbjct: 67  SNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAE 126

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      + + G  PT   YN L+  LL E K    + +   M + G++P+  TYNIL+
Sbjct: 127 QALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILL 186

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
              C+      A  L  EM +KG  P  +TYT+++  L K  ++ +A +L   F      
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRF-----K 241

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P + ++NALIDG C  G IE A  LL EM    V P+ V+Y+ +++  C  G VE A  L
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
             QM  RG   +  +F                             P  + YN LI GLC 
Sbjct: 302 FAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCS 361

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           N   + A ++  +M   G  P+  TY  LI+G A
Sbjct: 362 NGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA 395



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
             Q T  TY  +I  L ++  M     + +     G+     +F  +I+G+   G+ E+A
Sbjct: 69  AFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQA 128

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +   +      P    YN L+     + K +    L   MK+ G+ P+         T
Sbjct: 129 LKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPN-------VFT 181

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           YN L++ LCKN   D A +L  EM +KG  PD  TY +++  +    K
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGK 229


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 161/303 (53%), Gaps = 7/303 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R  +PD   Y + +  MCK   + EA  +  +M   G+    VTYNTLI G+C  G L+ 
Sbjct: 193 RLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKE 252

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EMV + I P   TYN+L+  L  E K+ EA  +L  M +  + PD ITY+ L++
Sbjct: 253 AIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY      KKA  + + M   G+ P + TYT LI    K   + EA  LF+    K M+P
Sbjct: 313 GYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            IV +++LIDG C +G I   + L+ EM       D +TY++L+ G C+ G ++ A  L 
Sbjct: 373 GIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALF 432

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++MK + I+P+         T+  L+ GLCK      A+E+ +++++KG   +  TY  +
Sbjct: 433 NKMKDQEIRPN-------IFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVM 485

Query: 304 IEG 306
           I G
Sbjct: 486 ING 488



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 160/293 (54%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+ YTY   V  +CKEG+++EA  +L  M +  + P  +TY+TL+DGY     
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M   G+ P   TY +LI+     + + EA ++ KEM +K +VP  +TY+ 
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G     + L DEM  +G    ++TY+SLI  L K   +  A  LF     + 
Sbjct: 380 LIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE 439

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+I  F  L+DG C  G ++ A  + +++     H +  TYN +++G C+QG +EEA 
Sbjct: 440 IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            +L +M+  G  P+         T+  +I  L K  E D AE+LLR+M+++G+
Sbjct: 500 TMLSKMEDNGCIPN-------AFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 159/305 (52%), Gaps = 7/305 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD+ T  + + G+C +G++++A    +++   G     V+Y TLI+G C  G+   
Sbjct: 123 RGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRA 182

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  F  ++  +   P    YN +I  +   + + EA  +  EM  KGI  D +TYN LI 
Sbjct: 183 AIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIY 242

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G  K+A  L +EM+ K I P + TY  L+  L K+ ++ EA  +    L   + P
Sbjct: 243 GFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D++ ++ L+DG+     +++A  +   M  M V PD  TY  L++G C+   V+EA  L 
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M ++ + P  +       TY++LI GLCK+       +L+ EM  +G   D  TY SL
Sbjct: 363 KEMHQKNMVPGIV-------TYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSL 415

Query: 304 IEGIA 308
           I+G+ 
Sbjct: 416 IDGLC 420



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 157/329 (47%), Gaps = 28/329 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +   +    K      A  +  +++  G+ P  +T N LI+ +C+ G +   FS 
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K+G  P   T N LI  L ++ ++ +A     ++  +G   + ++Y  LING C+
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+ + A     ++  +  +P ++ Y ++I  + K   + EA  LF     KG+  D+V 
Sbjct: 177 IGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVT 236

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI G C  G ++ A  LL EM    ++P+  TYN L+   C++GKV+EA+ +L  M 
Sbjct: 237 YNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVML 296

Query: 248 RRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGD 279
           +  +KPD I+++                            P   TY  LI G CKN+  D
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD 356

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIA 308
            A  L +EM  K + P   TY SLI+G+ 
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLC 385



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 130/298 (43%), Gaps = 45/298 (15%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N++ A S  + M+     P    +N ++      +    A  +   +  KGI PD IT N
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 120 ILINGYCR---------------------------------C--GNAKKAFSLHDEMIHK 144
           ILIN +C                                  C  G  KKA   HD+++ +
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 158

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           G Q   ++Y +LI  + K      A +       +   PD+VM+N +ID  C    +  A
Sbjct: 159 GFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEA 218

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
           + L  EM    +  D VTYNTL++G C  GK++EA  LL++M  + I       NP   T
Sbjct: 219 YGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTI-------NPNVYT 271

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSNS 319
           YN L+  LCK  +   A+ +L  M+   + PD  TY +L++G   +  V KA    N+
Sbjct: 272 YNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNA 329



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 104/182 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P   TY S + G+CK GR+     ++++M++ G     +TY++LIDG C  G+
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGH 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +  ++M  Q I P   T+ +L+  L    ++ +A ++ +++  KG   +  TYN+
Sbjct: 425 LDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNV 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G  ++A ++  +M   G  P   T+ ++I  L K++   +A++L    +A+G
Sbjct: 485 MINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544

Query: 181 ML 182
           +L
Sbjct: 545 LL 546


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 9/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+ +  D Y Y S ++  C+ G +  AS + ++   NG+ P   TY  LI+G+C  G 
Sbjct: 239 MKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQ 298

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
           +E A     +M  +G+      +N +I +    + MV+    +K + EK GI  D  TYN
Sbjct: 299 MEAAEMLVTDMQVRGVGINQIVFNTMI-DGYCRKNMVDKALEIKMIMEKMGIELDVYTYN 357

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L  G  R     +A +L   MI KG++P  ++YT+LI +   +  M+EA +LF      
Sbjct: 358 TLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGN 417

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P +V +N ++DG+   G+I  A    KEM++  + PD  +Y  L+HG C  GKV+ A
Sbjct: 418 GAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVA 477

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL ++MK+RG KP+ ++       Y ALI GL K    + A +L   M+  G+TPDD  
Sbjct: 478 LRLFEEMKQRGSKPNLVA-------YTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDAL 530

Query: 300 YFSLI 304
           Y +L+
Sbjct: 531 YSALV 535



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 167/330 (50%), Gaps = 31/330 (9%)

Query: 8   PDSYTYGS---FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           PDS T  S    V G CK GR+  A ++L++M  +G+   A+ YN+L+D Y  + + +  
Sbjct: 138 PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRV 197

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M  +GI PT  TY +L+  L   R + + + + +EM  K +  D   Y+ +IN 
Sbjct: 198 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 257

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YCR GN ++A  + DE +  GI+P   TY +LI    K  +M  A+ L  +   +G+  +
Sbjct: 258 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 317

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            ++FN +IDG+C    +++A  +   M++M +  D  TYNTL  G  R  +++EA+ LL 
Sbjct: 318 QIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR 377

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  +G++P+H+S+                             P+ +TYN ++ G  K  
Sbjct: 378 IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKG 437

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               AE   +EM  KG+ PD  +Y +L+ G
Sbjct: 438 SIREAERFKKEMEKKGLVPDIYSYAALVHG 467



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD Y+Y + V G C  G+++ A R+ E+MK+ G  P  V Y  LI G   +G 
Sbjct: 449 MEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGR 508

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
            E AF   D M+  G+ P  + Y+ L+  L  ++K
Sbjct: 509 SEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 543


>gi|255661024|gb|ACU25681.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 376

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 152/295 (51%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G   ++  +LE  ++ G V  A  Y+ +I+G C +  
Sbjct: 85  MKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEIAEQKGGVLDAFAYSAMINGLCKEAK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M   G  P A  YN LI+ L+   K  +A    +EMG     P  +TYN 
Sbjct: 145 LDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASKYEDAICAFQEMGNMDCSPTIVTYNX 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  +M+ KG  P+++TY+SL   L +  ++  A QL++  ++KG
Sbjct: 205 LINGLCKGERYAEAYDLVKQMLEKGFNPSVITYSSLFKGLCQGRKVEMALQLWKKVISKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C  G IE A +L   M+R K  P+ VT NTLM G  + G V    
Sbjct: 265 FKPDVQMHNILIHGLCNVGKIELALALYFGMNRWKCSPNLVTLNTLMEGFYKDGDVRSGL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R  +KPD IS+N T       ++GLC       A   L + + K I P
Sbjct: 325 VIWARILRNELKPDIISYNIT-------LKGLCSCNRISGAVLFLHDALGKNIFP 372



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 160/292 (54%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G +  A R+ ++M E  + P AV YNT+++G+     ++  F   D M ++G   T 
Sbjct: 1   CELGDISGAERVYKEMVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGREG-SRTV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           +++N+++  L    K+ EA  + + M E G V DS TY IL++G+C+ G+  K+  + + 
Sbjct: 60  ASFNIIMRGLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEI 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+ ++ +A  +  +    G  P+  ++N+LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A    +EM  M   P  VTYN L++G C+  +  EA  L+ QM  +G       FNP
Sbjct: 180 YEDAICAFQEMGNMDCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKG-------FNP 232

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + +TY++L +GLC+ ++ ++A +L ++++SKG  PD   +  LI G+ +V K
Sbjct: 233 SVITYSSLFKGLCQGRKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGK 284



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 146/308 (47%), Gaps = 10/308 (3%)

Query: 10  SYTYGSF---VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           S T  SF   + G+   G+++EA  + E MKE+G V  + TY  L+ G+C  G+   +  
Sbjct: 56  SRTVASFNIIMRGLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLH 115

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +   ++G +  A  Y+ +I+ L  E K+ +A  +L  M   G  P++  YN LING  
Sbjct: 116 VLEIAEQKGGVLDAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGLV 175

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
                + A     EM +    PT++TY  LI  L K  R  EA  L +  L KG  P ++
Sbjct: 176 GASKYEDAICAFQEMGNMDCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFNPSVI 235

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +++L  G C    +E A  L K++      PD   +N L+HG C  GK+E A  L   M
Sbjct: 236 TYSSLFKGLCQGRKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGKIELALALYFGM 295

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            R    P+ +       T N L++G  K+ +      +   ++   + PD  +Y   ++G
Sbjct: 296 NRWKCSPNLV-------TLNTLMEGFYKDGDVRSGLVIWARILRNELKPDIISYNITLKG 348

Query: 307 IASVDKAA 314
           + S ++ +
Sbjct: 349 LCSCNRIS 356



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD+  Y + ++G  +  R+++   + + M   G   T  ++N ++ G  + G 
Sbjct: 16  MVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGREG-SRTVASFNIIMRGLFDNGK 74

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S  + M + G +  ++TY +L+H         ++  +L+   +KG V D+  Y+ 
Sbjct: 75  VDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEIAEQKGGVLDAFAYSA 134

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     KA S+ + M + G +P    Y SLI  L   ++  +A   F+      
Sbjct: 135 MINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASKYEDAICAFQEMGNMD 194

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P IV +N LI+G C       A+ L+K+M     +P  +TY++L  G C+  KVE A 
Sbjct: 195 CSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFNPSVITYSSLFKGLCQGRKVEMAL 254

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L  ++  +G KPD          +N LI GLC   + +LA  L   M     +P+  T 
Sbjct: 255 QLWKKVISKGFKPD-------VQMHNILIHGLCNVGKIELALALYFGMNRWKCSPNLVTL 307

Query: 301 FSLIEGI 307
            +L+EG 
Sbjct: 308 NTLMEGF 314



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G +P+++ Y S ++G+    + E+A    ++M      PT VTYN LI+G C    
Sbjct: 155 MTNNGCKPNAHVYNSLINGLVGASKYEDAICAFQEMGNMDCSPTIVTYNXLINGLCKGER 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    +M+++G  P+  TY+ L   L   RK+  A  + K++  KG  PD   +NI
Sbjct: 215 YAEAYDLVKQMLEKGFNPSVITYSSLFKGLCQGRKVEMALQLWKKVISKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A +L+  M      P ++T  +L+    K   +     ++   L   
Sbjct: 275 LIHGLCNVGKIELALALYFGMNRWKCSPNLVTLNTLMEGFYKDGDVRSGLVIWARILRNE 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +     + P  +T
Sbjct: 335 LKPDIISYNITLKGLCSCNRISGAVLFLHDALGKNIFPTVIT 376



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 10/219 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KEM E+ + PD++ YN ++NG+ R    K  F L D M  +G   T+ ++  ++ 
Sbjct: 9   AERVYKEMVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGREG-SRTVASFNIIMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ EA  ++E     G + D   +  L+ G C NG+  ++  +L+  ++     
Sbjct: 68  GLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEIAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++ K+++A  +L+ M   G KP+ H+        YN+LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHV--------YNSLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + A    +EM +   +P   TY  LI G+   ++ AE+
Sbjct: 180 YEDAICAFQEMGNMDCSPTIVTYNXLINGLCKGERYAEA 218


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 169/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+  T+ S + G C  G+L+EA  +L +M  N + P   T+N LIDG C +G 
Sbjct: 220 MIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGE 279

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S    M+KQG+ P   TY  L+    + +++ +A  +   +  +G+ P+  +Y++
Sbjct: 280 VKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSV 339

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     +A  L  EM  K + P  +TY+SLI  L K  R+ +   L +    +G
Sbjct: 340 MINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRG 399

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +I+ +N+L++G C N  +++A +LL +M    + PD  TY TL+ G C+ G++++A+
Sbjct: 400 QPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQ 459

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+   +  +G  P +I        Y  +I GLCK    D A  LL +M   G  PD  TY
Sbjct: 460 RIYQDLLCKGY-PLNIRM------YTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTY 512

Query: 301 FSLIEGIASVDKAAES 316
            +LI  +   +K  ++
Sbjct: 513 ETLISALFKNNKNGKA 528



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 163/303 (53%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+PD   Y + +   CK+  + +A  +  +M    + P  VT+N+LI G+C  G L+ A 
Sbjct: 190 VRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAV 249

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +EM    + P   T+N+LI  L  E ++ +A  +L  M ++G+ P+ +TY  L++GY
Sbjct: 250 GLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGY 309

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
                  KA  + + +  +G+ P + +Y+ +I  L K   + EA +LF+    K M P+ 
Sbjct: 310 FLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNT 369

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +++LIDG C +G I   + L+ E++      + +TYN+L++G C+  +V++A  LL +
Sbjct: 370 VTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTK 429

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           MK  GI+PD         TY  L+ GLCKN     A+ + ++++ KG   +   Y  +I 
Sbjct: 430 MKDEGIQPD-------MSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMIN 482

Query: 306 GIA 308
           G+ 
Sbjct: 483 GLC 485



 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 186/382 (48%), Gaps = 84/382 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+QP+ +T+   ++      +L  A  M+ ++ + G  P  VT NTL+ G C  G 
Sbjct: 79  MELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGK 138

Query: 61  LEMAFSFRDEMVK---------------------------------QGIM---PTASTYN 84
           ++ A +F D +++                                 +G++   P    Y 
Sbjct: 139 VKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYT 198

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSI---------------------------- 116
            +I     ++ +++A D+  EM  K I P+ +                            
Sbjct: 199 AIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLN 258

Query: 117 -------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRM 166
                  T+NILI+G C+ G  KKA S+   MI +G++P ++TYTSL+   F++ + N+ 
Sbjct: 259 NVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNK- 317

Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
             A  +F     +G+ P++  ++ +I+G C N  ++ A  L KEM    + P+ VTY++L
Sbjct: 318 --AKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSL 375

Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
           + G C+ G++ +   L+D++  RG +P +I      +TYN+L+ GLCKN + D A  LL 
Sbjct: 376 IDGLCKSGRISDVWDLIDEINNRG-QPANI------ITYNSLLNGLCKNHQVDKAIALLT 428

Query: 287 EMVSKGITPDDNTYFSLIEGIA 308
           +M  +GI PD +TY +L++G+ 
Sbjct: 429 KMKDEGIQPDMSTYTTLVDGLC 450



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 162/292 (55%), Gaps = 9/292 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    V P+ YT+   + G+CKEG +++A+ +L  M + G+ P  VTY +L+DGY     
Sbjct: 255 MSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKE 314

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    + +  +G+ P   +Y+++I+ L   + + EA  + KEM  K + P+++TY+ 
Sbjct: 315 VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G     + L DE+ ++G    ++TY SL+  L K +++ +A  L      +G
Sbjct: 375 LIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG 434

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV-TYNTLMHGRCRQGKVEEA 239
           + PD+  +  L+DG C NG ++ A  + +++   K +P  +  Y  +++G C++G  +EA
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDL-LCKGYPLNIRMYTVMINGLCKEGFFDEA 493

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
             LL QM+  G  PD +       TY  LI  L KN +   A +LLREM+++
Sbjct: 494 LSLLSQMEDNGCMPDAV-------TYETLISALFKNNKNGKAVKLLREMIAR 538



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 150/287 (52%), Gaps = 15/287 (5%)

Query: 39  NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE 98
           N   P    +N ++       + ++A SF  +M  +GI P   T+N+LI+      ++  
Sbjct: 47  NNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNF 106

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A  M+ ++ + G  PD++T N L+ G C  G  K+A + HD +I K      ++Y +LI 
Sbjct: 107 AFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLIN 166

Query: 159 VLSKQNRMIEADQLFENFLAKGML---PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
            L K      A QL      +G+L   PD++M+ A+ID  C +  +  A+ L  EM   K
Sbjct: 167 GLCKSGETRAALQLLRKI--EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKK 224

Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
           ++P+ VT+N+L++G C  G+++EA  LL++M    +       NP   T+N LI GLCK 
Sbjct: 225 IYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNV-------NPNVYTFNILIDGLCKE 277

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAESSNS 319
            E   A  +L  M+ +G+ P+  TY SL++G   +  V+KA    N+
Sbjct: 278 GEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNT 324


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 158/316 (50%), Gaps = 5/316 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V PD  +Y + ++G+CK  +L+EA  +L +M+  G  P +VT  TL+DG C  G 
Sbjct: 170 MGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGR 229

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M K+G       Y  LI        +    ++  EM  KGI  + +TY+ 
Sbjct: 230 MDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSC 289

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G CR G  K+A ++ + M   GI P ++TYT LI  L K  R   A  L    + KG
Sbjct: 290 LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 349

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  V +N L+ G C  G +  AF +L+ M       D VTYNTLM G C +GKV+EA 
Sbjct: 350 EEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEAL 409

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L + M       +     P   T+N LI GLCK      A ++ R+MV KG   +  TY
Sbjct: 410 KLFNSM-----FDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 464

Query: 301 FSLIEGIASVDKAAES 316
             L+ G     K  E+
Sbjct: 465 NMLLGGCLKAGKIKEA 480



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 168/348 (48%), Gaps = 30/348 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  TY   + G+CK+GR   A  +L  M E G  P+ VTYN L+ G C +G 
Sbjct: 310 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 369

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIVPDSITY 118
           +  AF     M+++G      TYN L+  L  + K+ EA  +   M   E  + P+  T+
Sbjct: 370 VIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF 429

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N+LI G C+ G   KA  +H +M+ KG    ++TY  L+    K  ++ EA +L++  L 
Sbjct: 430 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLD 489

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G +P+   ++ LIDG C    +  A  L  EM    ++P    YNTLM   C++G +E+
Sbjct: 490 LGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQ 549

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           A+ L  +M     +PD ISFN                            P  LT++ LI 
Sbjct: 550 AKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLIN 609

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L K  E D A+  L  MV+ G TPD   Y SL++G++S     E  N
Sbjct: 610 RLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 657



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 162/300 (54%), Gaps = 13/300 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M  +G + D  TY + + G+C +G+++EA ++   M   EN L P   T+N LI G C +
Sbjct: 380 MIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 439

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G L  A     +MVK+G      TYN+L+   L   K+ EA ++ K++ + G VP+S TY
Sbjct: 440 GRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTY 499

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +ILI+G+C+      A  L  EM   G+ P +  Y +L+  L K+  + +A  LF+    
Sbjct: 500 SILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 559

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
               PDI+ FN +IDG    G+ +    L  +M  M + PD +T++TL++   + G+++E
Sbjct: 560 ANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDE 619

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPD 296
           A+  L++M   G  PD        L Y++L++GL  + +GD  E   LL +M +KG   D
Sbjct: 620 AKSALERMVASGFTPD-------ALVYDSLLKGL--SSKGDTTEIINLLHQMAAKGTVLD 670



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 150/301 (49%), Gaps = 7/301 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P   T    V  + +      A  +  +M    ++P+  + + LI+ + +    ++ F  
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGV 131

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K+G        N+++  L     + EA  +++EMG K + PD ++YN LING C+
Sbjct: 132 VGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK 191

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
               K+A  L  EM   G  P  +T T+L+  L K  RM EA +L E    KG   D+V+
Sbjct: 192 AKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVL 251

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI G C NGN++R   L  EM    +  + VTY+ L+HG CR G+ +EA  +L+ M 
Sbjct: 252 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA 311

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             GI PD +       TY  LI GLCK+     A +LL  MV KG  P + TY  L+ G+
Sbjct: 312 EHGIHPDVV-------TYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGL 364

Query: 308 A 308
            
Sbjct: 365 C 365



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 118/233 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   +  TY   + G  K G+++EA  + +Q+ + G VP + TY+ LIDG+C    
Sbjct: 452 MVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRM 511

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A     EM   G+ P    YN L+  L  E  + +A  + +EMG     PD I++N 
Sbjct: 512 LNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNT 571

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G+ +    L  +M+  G++P  LT+++LI  LSK   + EA    E  +A G
Sbjct: 572 MIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 631

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
             PD +++++L+ G  + G+     +LL +M       D    +T++   C  
Sbjct: 632 FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHS 684



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 126/293 (43%), Gaps = 42/293 (14%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +  EA  +     +  L+P+  T N L+D      N  +AFS    M    ++P+  + +
Sbjct: 54  QFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLS 113

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
            LI      +K      ++  + ++G   +    NI++ G CR G   +A  L  EM  K
Sbjct: 114 ALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRK 173

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + P                                   DIV +N LI+G C    ++ A
Sbjct: 174 SVSP-----------------------------------DIVSYNTLINGLCKAKKLKEA 198

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             LL EM+     P+ VT  TLM G C+ G+++EA  LL+ MK++G   D +        
Sbjct: 199 VGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVV-------L 251

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           Y  LI G C N   D  +EL  EM+ KGI+ +  TY  L+ G+  + +  E++
Sbjct: 252 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEAN 304



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 90/177 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ G+ P  + Y + ++ +CKEG LE+A  + ++M      P  +++NT+IDG    G+
Sbjct: 522 MRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGD 581

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +     + +MV+ G+ P A T++ LI+ L    ++ EA   L+ M   G  PD++ Y+ 
Sbjct: 582 FQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDS 641

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           L+ G    G+  +  +L  +M  KG        ++++  L    + ++  +L   F 
Sbjct: 642 LLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFF 698



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 45/190 (23%)

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP----- 218
           ++  EA  LF + L   +LP     N L+D    + N   AFS+ + M  + V P     
Sbjct: 53  SQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSL 112

Query: 219 ------------------------------DEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
                                         +    N ++ G CR G V EA  L+ +M R
Sbjct: 113 SALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGR 172

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + + PD +S       YN LI GLCK ++   A  LL EM + G  P+  T  +L++G+ 
Sbjct: 173 KSVSPDIVS-------YNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLC 225

Query: 309 S---VDKAAE 315
               +D+A E
Sbjct: 226 KDGRMDEAME 235


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 172/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+ L     T   +++      
Sbjct: 62  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLK 121

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++ N
Sbjct: 122 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXN 181

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++ F+  L K
Sbjct: 182 TLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVK 241

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 242 GLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D M  +G+KPD       ++TY  LI G CK  + D A E  + M+ + I  DD  
Sbjct: 302 HDLIDDMSMKGLKPD-------KITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVV 354

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 355 YTALISGLCQEGRSVDA 371



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+ NTL++GY   G+L+  
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEG 196

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G+ P   TY++LI+ L  E KM +A++   EM  KG+VP+ +T+  LI+G
Sbjct: 197 FRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDG 256

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L ++   KG+ PD
Sbjct: 257 HCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPD 316

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIBG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 317 KITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLR 376

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M    +KPD         TY  +I   CK  +     +LL+EM   G  P   TY  L+
Sbjct: 377 EMLSVRLKPD-------TGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 429

Query: 305 EG 306
            G
Sbjct: 430 NG 431



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+   ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ +M  KG+ PD ITY  
Sbjct: 263 VDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTT 322

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIBG C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+  
Sbjct: 323 LIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVR 382

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLKEM R    P  VTYN LM+G
Sbjct: 383 LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 158/287 (55%), Gaps = 7/287 (2%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
            CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L   F  +  M+  G+ P 
Sbjct: 150 FCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPD 209

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TY++LI+ L  E KM +A+++  EM  KG+ P+ +T+  LI+G+C+ G    A  ++ 
Sbjct: 210 VYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYK 269

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+  D + +  LIDG C  G
Sbjct: 270 QMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEG 329

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
           +++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L +M   G+KPD     
Sbjct: 330 DLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPD----- 384

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               TY  +I   CK  +     +LL++M   G  P   TY  L+ G
Sbjct: 385 --TXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 167/316 (52%), Gaps = 8/316 (2%)

Query: 2   KSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +++G Q  D Y +   ++   + G L +A       +E+ L     T   +++       
Sbjct: 61  ETKGTQRXDIYVFSGLITTYLESGFLRDAIECYRLTREHKLRVPFDTCKKVLEHLMKLKY 120

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++ + F   +   G       +N+L+H    +  +  A  +   + + G+ P  ++YN 
Sbjct: 121 FKLVWGFXXXIXXXGXXXXXXFFNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNT 180

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGY R G+  + F L   M+  G+QP + TY+ LI  L K+++M +A++LF+  L KG
Sbjct: 181 LMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKG 240

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A 
Sbjct: 241 LXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAH 300

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D+M  +G+K D       ++TY  LI G CK  + D A E  + M+ + I  DD  Y
Sbjct: 301 DLIDEMSMKGLKXD-------KITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAY 353

Query: 301 FSLIEGIASVDKAAES 316
            +LI G+    ++ ++
Sbjct: 354 TALISGLCQEGRSVDA 369



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 136/229 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M   GL P  VT+ TLIDG+C  G 
Sbjct: 201 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGR 260

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+  D ITY  
Sbjct: 261 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTT 320

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 321 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 380

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           + PD   +  +I+  C  G++ +   LLK+M R    P  VTYN LM+G
Sbjct: 381 LKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/267 (31%), Positives = 142/267 (53%), Gaps = 7/267 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P   +Y + ++G  + G L E  R+   M  +G+ P   TY+ LI+G C +  ++ A
Sbjct: 170 GLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDA 229

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEM+ +G+ P   T+  LI       ++  A ++ K+M  + ++PD ITYN LI G
Sbjct: 230 NELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYG 289

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+ K+A  L DEM  KG++   +TYT+LI    K+  +  A +  +  + + +  D
Sbjct: 290 LCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD 349

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V + ALI G C  G    A  +L+EM  + + PD  TY  +++  C++G V +  +LL 
Sbjct: 350 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLK 409

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQG 271
            M+R G         P+ +TYN L+ G
Sbjct: 410 DMQRNG-------HAPSVVTYNVLMNG 429



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           +N LMH  C+ G +  A+ + D + + G++P  +S       YN L+ G  +   GDL E
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVS-------YNTLMNGYIR--LGDLNE 193

Query: 283 --ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
              L   M++ G+ PD  TY  LI G+    K  +++
Sbjct: 194 GFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 230


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY + ++G CK G L  A +++ ++    L P  +TY TLID YC    
Sbjct: 43  MKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQC 102

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    DEM  + ++P   TY  +++ L    K+ EA  + +EM E G+VP+  +Y  
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + GN  +AF L   M+ +GI   ++ YT+L+  L K      A+ +F+  L + 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V ++ALIDGHC  G++ +   LL+EM+   + P+ + Y++++ G  ++G + EA 
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M +R I P+          Y  LI G  K  +  +A +L +EM S+G+  ++   
Sbjct: 283 DVMRKMVQRNILPN-------VFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVI 335

Query: 301 FSLIEGIASVDKAAES 316
            S +  +    +  E+
Sbjct: 336 DSFVNNLKRSGRMEEA 351



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 173/346 (50%), Gaps = 31/346 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           KS G   D   Y   ++G+ K G+ E  S     M++ GL P + T+NT+I+ YC +GNL
Sbjct: 396 KSSGF--DVVAYNVLINGLFKLGKYESES-FHTGMRQLGLAPDSATFNTMINAYCKEGNL 452

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    +EM   G+ P + T N+L+  L    ++ +  D+L +M   G  P   T+  +
Sbjct: 453 GNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAV 512

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++   +   A      HD+++  G++  + TY +LI    +   +  A  +F++ + KG+
Sbjct: 513 LDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGI 572

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           L DI+ +NALI G+C + ++++AF++  +M    V P+  TYN L+ G      ++EA  
Sbjct: 573 LADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAG 632

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           L++QMK RG+ P+  +++                            P   TYN LI    
Sbjct: 633 LVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFA 692

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           K ++   A+EL++EM  +GI P+ +TY  LI G   + K  E + S
Sbjct: 693 KGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKS 738



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 159/317 (50%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD  TY   ++G+CK G++EEA  +  +M+E G+VP   +Y TLID    +GN
Sbjct: 113 MTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGN 172

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF  +  MV +GI      Y  L+  L        A+DM + + E+ +VP+ +TY+ 
Sbjct: 173 VAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSA 232

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G+  K   L  EM  K I P ++ Y+S++   +K+  + EA  +    + + 
Sbjct: 233 LIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN 292

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++ ++  LIDG+        A  L KEM    +  +    ++ ++   R G++EEA 
Sbjct: 293 ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEAD 352

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M  RG+ PD       R+ Y +++ G  K  +   A  + +EM  K    D   Y
Sbjct: 353 ELFKDMMSRGLLPD-------RVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAY 405

Query: 301 FSLIEGIASVDKAAESS 317
             LI G+  + K    S
Sbjct: 406 NVLINGLFKLGKYESES 422



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 168/363 (46%), Gaps = 54/363 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PDS T+ + ++  CKEG L  A ++L +MK  GL P ++T N L+   C  G 
Sbjct: 427 MRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGE 486

Query: 61  LEMAFSFRDEMVKQGIMPTA-----------------------------------STYNL 85
           +E      ++M+  G  PT                                    STYN 
Sbjct: 487 IEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNT 546

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI        +  A  + K+M  KGI+ D ITYN LI+GYC   + KKAF++H +M+ +G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P + TY  L+  LS    + EA  L      +G++P+   ++ L+ GH   GN++   
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  EM      P   TYN L+    +  K+ +A+ L+ +M+ RGI P+         TY
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS-------TY 719

Query: 266 NALIQGLCK-NQEGDL-----------AEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           + LI G  K +++ +L           A+ L  EM  KG  P +NT   +   +A   K 
Sbjct: 720 DILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKK 779

Query: 314 AES 316
           A++
Sbjct: 780 ADA 782



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 141/257 (54%), Gaps = 12/257 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+ D  TY + +S  C+ G +  A+ + + M   G++   +TYN LI GYC   +L+ A
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F+   +M+ +G+ P   TYN+L+  L   R + EA  ++ +M E+G+VP++ TY+IL++G
Sbjct: 596 FAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSG 655

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + GN K+   L+ EMI KG  P   TY  LI   +K  +M +A +L +    +G+ P+
Sbjct: 656 HGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715

Query: 185 IVMFNALIDGHCT-------NGNIERAFS-----LLKEMDRMKVHPDEVTYNTLMHGRCR 232
              ++ LI G          N +++R++      L +EM+     P E T   +     +
Sbjct: 716 SSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAK 775

Query: 233 QGKVEEARRLLDQMKRR 249
            GK  +A+R+L+++ ++
Sbjct: 776 PGKKADAQRILNKLYKK 792



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 105/198 (53%), Gaps = 12/198 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+  TY   + G+     ++EA+ ++ QMKE GLVP A TY+ L+ G+   GN
Sbjct: 602 MLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGN 661

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM+ +G +P   TYN+LI      +KM +A ++++EM  +GI P+S TY+I
Sbjct: 662 MKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDI 721

Query: 121 LINGYCRCG-------NAKKAFS-----LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           LI G+ +         + K+++      L +EM  KG  P   T   + F L+K  +  +
Sbjct: 722 LICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKAD 781

Query: 169 ADQLFENFLAKGMLPDIV 186
           A ++      K  + +++
Sbjct: 782 AQRILNKLYKKKTVQELL 799



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 42/199 (21%)

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N+LI+GYCR G   +A                                    +L E   
Sbjct: 20  FNVLIDGYCRNGEISRAV-----------------------------------ELLEGMK 44

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G  PDIV +N L++G C  G++  A  L+ E+  + + P+ +TY TL+   C+   +E
Sbjct: 45  TEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLE 104

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  + D+M  + + PD +       TY  ++ GLCK+ + + A+ + REM   G+ P+ 
Sbjct: 105 DALYMYDEMTVKSLVPDVV-------TYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNR 157

Query: 298 NTYFSLIEGIASVDKAAES 316
            +Y +LI+ +      AE+
Sbjct: 158 FSYATLIDSLFKEGNVAEA 176



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FN LIDG+C NG I RA  LL+ M      PD VTYNTLM+G C+ G +  A++L+ ++ 
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                   ++  P  +TY  LI   CK+Q  + A  +  EM  K + PD  TY  ++ G+
Sbjct: 80  L-------VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 308 ASVDKAAESSN 318
               K  E+ +
Sbjct: 133 CKSGKVEEAKS 143


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 160/306 (52%), Gaps = 11/306 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEA-SRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M  RG+  ++ TY + V G+CK  RL+EA + +L ++   G  P  VTY+T+IDG C  G
Sbjct: 210 MLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAG 269

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A    +EM      PTA TYN LI        M EA  +L +M +    PD ITY 
Sbjct: 270 RLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYT 326

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++ +C+ G    A+ L  +M+   + P ++T+TSL+  L  + RM +A +L E    +
Sbjct: 327 TLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 386

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P I  +N ++DG+C +  + +A  L+ +       P+ VTYN L+ G CR G+ ++A
Sbjct: 387 GCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQA 446

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLT-YNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            + LDQ+   G         PT +  Y  ++  LC++   D A +   EM+ +G  P   
Sbjct: 447 LQYLDQLNSEG------GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAA 500

Query: 299 TYFSLI 304
           T+ +++
Sbjct: 501 TFATVV 506



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 154/286 (53%), Gaps = 11/286 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+ T    V  +C   R+++A  ++E+M   G+   A+TY+ L+DG C    L+ A + 
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 241

Query: 68  R-DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              E+ ++G  P   TY+ +I  L    ++ +A D+ +EM      P +ITYN LI GYC
Sbjct: 242 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYC 298

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G+  +A  L  +M+     P ++TYT+L+    K  R+ +A +LF+  +A  + PD+V
Sbjct: 299 RAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVV 358

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F +L+DG C  G +E A  LL+E+ R    P   TYN ++ G C+  +V +A  L+   
Sbjct: 359 TFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADF 418

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           + RG       F P  +TYN L+ G C+    D A + L ++ S+G
Sbjct: 419 RSRG-------FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 457



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 171/345 (49%), Gaps = 33/345 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKSRG+ P +  +   + G+C+ GRL  A  +  QM +    P  +TY  L+ G    G 
Sbjct: 106 MKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKAGR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EMV    +P  +T  +++  L +  ++ +A ++++EM  +G+  ++ITY+ 
Sbjct: 165 LRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSA 224

Query: 121 LINGYCRCGNAKKAFSLH-DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           L++G C+C    +A +L   E+  +G  P ++TY+++I  L K  R+ +A  +FE     
Sbjct: 225 LVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM--- 281

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
              P  + +N+LI G+C  G+++ A  LL +M      PD +TY TLM   C+ G++++A
Sbjct: 282 SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDA 341

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
             L  QM    + PD ++F                             PT  TYN ++ G
Sbjct: 342 YELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 401

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            CK+ +   AEEL+ +  S+G  P+  TY  L+ G     +  ++
Sbjct: 402 YCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQA 446



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 151/297 (50%), Gaps = 12/297 (4%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY + +  +CK   L+EA  +L  MK  G+ P  + +N +I G C  G L  A     +M
Sbjct: 82  TYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM 141

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
                 P   TY  L+H L    ++ +A  +L+EM     VPD+ T  +++   C     
Sbjct: 142 -NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRV 200

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK-GMLPDIVMFNA 190
             A  L +EM+H+G+    +TY++L+  L K  R+ EA  L    + + G  PDIV ++ 
Sbjct: 201 DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYST 260

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           +IDG C  G +  A  + +EM      P  +TYN+L+ G CR G ++EA RLL +M    
Sbjct: 261 VIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN 317

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             PD I       TY  L+   CK    D A EL ++MV+  ++PD  T+ SL++G+
Sbjct: 318 CAPDVI-------TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 367



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 165/339 (48%), Gaps = 29/339 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEE-ASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M   G   DS T+   + G+    +L      +L+++++ GL P  V  NT++   C+  
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +   A +  D+M + G +   + YNL IH L   R + EA  +L +M  +G+ P ++ +N
Sbjct: 61  DTTTAMALFDKMAELGAVNHTTYYNL-IHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHN 119

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ++I G CR G  + A  ++ +M +    P  LTYT L+  LSK  R+ +A Q+ +  ++ 
Sbjct: 120 VVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSA 178

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
             +PD      ++   C    ++ A  L++EM    +  + +TY+ L+ G C+  +++EA
Sbjct: 179 RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEA 238

Query: 240 -RRLLDQMKRRGIKPDHISFN-------------------------PTRLTYNALIQGLC 273
              LL ++ RRG  PD ++++                         PT +TYN+LI G C
Sbjct: 239 VALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYC 298

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           +  + D A  LL +MV     PD  TY +L+     + +
Sbjct: 299 RAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGR 337



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 2/242 (0%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD  TY + +S  CK GRL++A  + +QM  N L P  VT+ +L+DG C +G +E A   
Sbjct: 320 PDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALEL 379

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
            +E+ ++G  PT  TYN ++       ++ +A++++ +   +G VP+++TYNIL+ G CR
Sbjct: 380 LEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCR 439

Query: 128 CGNAKKAFSLHDEMIHKGIQ-PTMLTYTSLIF-VLSKQNRMIEADQLFENFLAKGMLPDI 185
            G   +A    D++  +G   PT +   ++I   L +  R  +A Q +E  + +G +P  
Sbjct: 440 AGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAA 499

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             F  ++   C     ++A  LL+EM +    P   T + ++   CR G +++A  L  +
Sbjct: 500 ATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASE 559

Query: 246 MK 247
           ++
Sbjct: 560 LR 561



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 2/213 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +  + PD  T+ S V G+C EGR+E+A  +LE++   G  PT  TYN ++DGYC    
Sbjct: 348 MVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQ 407

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSIT-Y 118
           +  A     +   +G +P   TYN+L+       +  +A   L ++  E G  P S+  Y
Sbjct: 408 VRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMY 467

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            I+++  CR G    A   ++EMI +G  P   T+ +++F L K ++  +A +L E  + 
Sbjct: 468 AIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIK 527

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            G  P     +A++  +C  G I++A  L  E+
Sbjct: 528 YGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 560



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 122/247 (49%), Gaps = 10/247 (4%)

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDML-KEMGEKGIVPDSITYNILINGYCRCG 129
           M+  G    +ST+ +++  L    K+     +L  E+ ++G+ PD +  N ++   C   
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           +   A +L D+M   G      TY +LI  L K   + EA  L  +  ++GM P  ++ N
Sbjct: 61  DTTTAMALFDKMAELG-AVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHN 119

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            +I G C  G +  A  + ++M+     PD +TY  L+HG  + G++ +A ++L +M   
Sbjct: 120 VVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKAGRLRDAVQVLQEM--- 175

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            +   H+   P   T   ++Q LC     D A EL+ EM+ +G+  +  TY +L++G+  
Sbjct: 176 -VSARHV---PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 231

Query: 310 VDKAAES 316
            ++  E+
Sbjct: 232 CERLDEA 238


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 169/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A        E+ L     T   +++      
Sbjct: 58  LETKGNQRSDIYVFSGLITAYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLK 117

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E+++ G   +   +N+L+H    +  +  A  +   + + G+ P  ++YN
Sbjct: 118 YFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYN 177

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M+  G  P + TY+ LI  L K+++M  A++LF+  L K
Sbjct: 178 TLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVK 237

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 238 GLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 297

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       + TY  LI G CK  + D A    + M+ + I  DD  
Sbjct: 298 HDLIDEMSXKGLKPD-------KFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVA 350

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 351 YTALISGLCQEGRSVDA 367



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 154/284 (54%), Gaps = 7/284 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK+G +  A  + + + + GL P+ V+YNTL++GY   G+L+  
Sbjct: 133 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 192

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M+  G  P   TY++LI+ L  E KM  A+++  EM  KG+VP+ +T+  LI+G
Sbjct: 193 FRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDG 252

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 253 HCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPD 312

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  LIDG C  G+++ AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 313 KFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLR 372

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           +M   G+ PD         TY  +I   CK  +     +LL+EM
Sbjct: 373 EMLSVGLXPD-------AGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 124/211 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  PD YTY   ++G+CKE +++ A+ + ++M   GLVP  VT+ TLIDG+C  G 
Sbjct: 199 MLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGR 258

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD  TY  
Sbjct: 259 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTT 318

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+   AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 319 LIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 378

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           + PD   +  +I+  C  G++ +   LLKEM
Sbjct: 379 LXPDAGTYTMIINEFCKKGDVWKGSKLLKEM 409


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 165/305 (54%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QPD++TY   + G+CK GR+  A R+L +M++ G  P  VTY  ++  +C  G 
Sbjct: 337 MGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 396

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   +  +EM  +G+   +  YN +I+ L  + +M EA  +++EM  +G  PD  +YN 
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 456

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C     ++A  + + ++ +G+    +TY ++I  L +  R  +A +L +  +  G
Sbjct: 457 IIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG 516

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+V +N LI   C +GN++R+  LL+EM    + P+ V+YN L+   C++ +V +A 
Sbjct: 517 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 576

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  QM  +G+ PD +       TYN LI GLCK      A  LL ++ ++ + PD  TY
Sbjct: 577 ELSKQMLNQGLAPDIV-------TYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITY 629

Query: 301 FSLIE 305
             LI 
Sbjct: 630 NILIS 634



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 165/338 (48%), Gaps = 38/338 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK-------------------------------EGRLEEA 29
           M ++G  P   TYG  + G+C+                               EG+L EA
Sbjct: 271 MMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEA 330

Query: 30  SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89
           + + E M   G  P A TY+ L+ G C  G +  A     EM K+G  P   TY +++H 
Sbjct: 331 TELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHS 390

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
                   +   +L+EM  KG+  +S  YN +I   C+ G   +A  L  EM  +G  P 
Sbjct: 391 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 450

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + +Y ++I+ L    +M EA+ +FEN L +G++ + + +N +I     +G  + A  L K
Sbjct: 451 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAK 510

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM       D V+YN L+   C+ G V+ +  LL++M  +GIKP+++S       YN LI
Sbjct: 511 EMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVS-------YNILI 563

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             LCK +    A EL ++M+++G+ PD  TY +LI G+
Sbjct: 564 SELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGL 601



 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 144/245 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+  +S  Y   +  +CK+GR++EA  ++++M+  G  P   +YNT+I   CN   
Sbjct: 407 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + ++++G++    TYN +IH LL + +  +A  + KEM   G   D ++YN 
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 526

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ GN  ++  L +EM  KGI+P  ++Y  LI  L K+ R+ +A +L +  L +G
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N LI+G C  G +  A +LL+++    VHPD +TYN L+   C+   +++A 
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA 646

Query: 241 RLLDQ 245
            LL++
Sbjct: 647 MLLNR 651



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 158/299 (52%), Gaps = 11/299 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P ++T+G     +C+ GR +EA  +L  M  +G VP AV Y T+I   C++G +  A 
Sbjct: 171 VPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAA 230

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +  +EM+  G     +T++ ++  +    ++ EA  ++  M  KG +P  +TY  L+ G 
Sbjct: 231 TLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGL 290

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR   A +A +    M+ +  +  ++ + ++I     + ++ EA +L+E    KG  PD 
Sbjct: 291 CRVRQADEARA----MLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDA 346

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             ++ L+ G C  G I  A  LL+EM++    P+ VTY  ++H  C+ G  ++ R LL++
Sbjct: 347 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 406

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           M  +G     ++ N     YN +I  LCK+   D A  L++EM S+G  PD  +Y ++I
Sbjct: 407 MSAKG-----LTLNSQ--GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 162/364 (44%), Gaps = 59/364 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+  Y + +  +C +G + EA+ +L +M   G      T++ ++ G C  G 
Sbjct: 201 MARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGR 260

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           +  A    D M+ +G MP   TY  L+  L                              
Sbjct: 261 VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGG 320

Query: 91  -LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
            L E K+ EA ++ + MG KG  PD+ TY+IL++G C+ G    A  L  EM  KG  P 
Sbjct: 321 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPN 380

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           ++TYT ++    K     +   L E   AKG+  +   +N +I   C +G ++ A  L++
Sbjct: 381 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 440

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------- 259
           EM     +PD  +YNT+++  C   ++EEA  + + +   G+  + I++N          
Sbjct: 441 EMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 500

Query: 260 ----PTRL--------------TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
                 RL              +YN LI+ +CK+   D +  LL EM  KGI P++ +Y 
Sbjct: 501 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 560

Query: 302 SLIE 305
            LI 
Sbjct: 561 ILIS 564



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 138/313 (44%), Gaps = 40/313 (12%)

Query: 28  EASRMLEQM-KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV-KQGIMPTASTYNL 85
            A  +L+Q+ +  G+ P+  +YN ++           A +    MV +  + PT  T+ +
Sbjct: 121 RALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGV 180

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
               L    +  EA  +L+ M   G VPD++ Y  +I+  C  G   +A +L +EM+  G
Sbjct: 181 AARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMG 240

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP---------------------- 183
               + T+  ++  +    R+ EA +L +  + KG +P                      
Sbjct: 241 CAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEAR 300

Query: 184 ---------DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
                    ++V+FN +I G    G +  A  L + M      PD  TY+ LMHG C+ G
Sbjct: 301 AMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLG 360

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           ++  A RLL +M+++G       F P  +TY  ++   CKN   D    LL EM +KG+T
Sbjct: 361 RIGSAVRLLREMEKKG-------FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLT 413

Query: 295 PDDNTYFSLIEGI 307
            +   Y  +I  +
Sbjct: 414 LNSQGYNGMIYAL 426



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 100/174 (57%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  +  TY + +  + ++GR ++A R+ ++M  +G     V+YN LI   C  GN++ +
Sbjct: 481 GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRS 540

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM ++GI P   +YN+LI EL  ER++ +A ++ K+M  +G+ PD +TYN LING
Sbjct: 541 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 600

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            C+ G    A +L +++ ++ + P ++TY  LI    K   + +A  L    +A
Sbjct: 601 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMA 654


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 158/284 (55%), Gaps = 7/284 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 118 GYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 177

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM +KG+VP+ +T+  LI+G
Sbjct: 178 FRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 237

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +L + L K+  + +A  L +    KG+ PD
Sbjct: 238 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPD 297

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 298 KITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLR 357

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           +M   G+KP+         TY  +I   CK  +     +LL+EM
Sbjct: 358 EMLSVGLKPN-------XGTYTMIINEFCKKGDVWTGSKLLKEM 394



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+           +++      
Sbjct: 43  LETKGTQRSDIYVFSGLITXYLESGFLRDAIECYRLTREHKFWVPLDXCRKVLEHLMKLK 102

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F  E+++ G   +   +N+L+H    E  +  A  +   + + G+ P  +++N
Sbjct: 103 YFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFN 162

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L K
Sbjct: 163 TLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDK 222

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL +G C++G +++A
Sbjct: 223 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQA 282

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 283 HDLIDEMSMKGLKPD-------KITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVV 335

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 336 YTALISGLCQEGRSVDA 352



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 127/211 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLIDG+C  G 
Sbjct: 184 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN L + L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 244 VDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 304 LIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVG 363

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           + P+   +  +I+  C  G++     LLKEM
Sbjct: 364 LKPNXGTYTMIINEFCKKGDVWTGSKLLKEM 394


>gi|357138611|ref|XP_003570884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Brachypodium distachyon]
          Length = 864

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 166/330 (50%), Gaps = 30/330 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GVQP+SYTY   V G+CKEG+  +  R+ + ++   + P  VTY +L+  YC+KGN
Sbjct: 340 MAHEGVQPNSYTYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGN 399

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM ++G  P   TYN+L+  LL   +  E + +L+ M EKG   D+ + NI
Sbjct: 400 TTAANRILDEMAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNI 459

Query: 121 LINGYCRCGNAKKAFSLHDEM-----------------------IHKGIQPTMLTYTSLI 157
           +I+G CR    + A  + D M                       I K   P  +TY++L+
Sbjct: 460 IIDGLCRNSKLEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLM 519

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K+ R  EA +     + K + PD V+++  I G+C +G    A  +L++M++   +
Sbjct: 520 NALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSCN 579

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P   +YN L+ G   + K +E  +L+ +MK +GI  +        +TYN+LI+  C    
Sbjct: 580 PSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSN-------VMTYNSLIKSFCGRGM 632

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            + A  LL EM+   I P+  ++  LI+  
Sbjct: 633 VNKAMPLLDEMLQNEIVPNVTSFGLLIKAF 662



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 172/377 (45%), Gaps = 69/377 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE---NGLV-PTAVTYNTLIDGYC 56
           M+++G+ P+  T+   +S +CK GR+ EA R+   M+E    GL  P  VT++ ++ G+C
Sbjct: 231 MRAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFC 290

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           + G ++ A    D M   G +    +YN  +  L+   ++ EA ++L EM  +G+ P+S 
Sbjct: 291 DAGMVDEATVLVDIMRCGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSY 350

Query: 117 TYNILING-----------------------------------YCRCGNAKKAFSLHDEM 141
           TYNI+++G                                   YC  GN   A  + DEM
Sbjct: 351 TYNIIVDGLCKEGKAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAANRILDEM 410

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             KG  P + TY  L+  L K  R  E ++L E    KG   D    N +IDG C N  +
Sbjct: 411 AQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSKL 470

Query: 202 ERAFSLLKEM---DRMKVH--------------------PDEVTYNTLMHGRCRQGKVEE 238
           E A  ++  M    R+ +                     PD +TY+TLM+  C++G+ +E
Sbjct: 471 EMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLMNALCKEGRFDE 530

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A++ L +M  + I PD +        Y+  I G C + +  LA ++LR+M  +   P   
Sbjct: 531 AKKKLVEMIGKDISPDSV-------IYDTFIHGYCMHGKTSLAIKVLRDMEKRSCNPSTR 583

Query: 299 TYFSLIEGIASVDKAAE 315
           +Y  LI G     K+ E
Sbjct: 584 SYNLLIWGFQEKQKSDE 600



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 155/307 (50%), Gaps = 23/307 (7%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           + ++ G    G C+ GR  +A  +L+ M E  LV      NT++ G+C +G ++ A    
Sbjct: 173 NEFSSGILARGYCRAGRSADALAVLDAMPEMNLV----VCNTVVAGFCREGRVDEAERLV 228

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEA----DDMLKEMGEKGIV-PDSITYNILIN 123
           D M  QG+ P   T+N  I  L    +++EA    +DM +E  E+G+  PD +T++++++
Sbjct: 229 DRMRAQGLAPNVVTFNGRISALCKAGRVLEAYRIFNDM-QEAWEQGLPRPDQVTFDVMLS 287

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G   +A  L D M   G    + +Y   +  L K  R+ EA +L      +G+ P
Sbjct: 288 GFCDAGMVDEATVLVDIMRCGGFLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQP 347

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMK---VHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +N ++DG C  G   +AF + +  D ++   + PD VTY +L+H  C +G    A 
Sbjct: 348 NSYTYNIIVDGLCKEG---KAFDVRRVEDFVRSGVMTPDVVTYTSLLHAYCSKGNTTAAN 404

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+LD+M ++G  P+         TYN L+Q L K       E LL  M  KG + D  + 
Sbjct: 405 RILDEMAQKGCAPN-------LFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASC 457

Query: 301 FSLIEGI 307
             +I+G+
Sbjct: 458 NIIIDGL 464



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 153/362 (42%), Gaps = 50/362 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+ +TY   +  + K GR  E  R+LE+M E G      + N +IDG C    
Sbjct: 410 MAQKGCAPNLFTYNVLLQSLLKAGRTTEVERLLERMSEKGYSLDTASCNIIIDGLCRNSK 469

Query: 61  LEMAFSFRDEMVKQG-----------------------IMPTASTYNLLIHELLMERKMV 97
           LEMA    D M  +G                        +P   TY+ L++ L  E +  
Sbjct: 470 LEMAMDIVDGMWNEGRLALRRLGNSFVSLVSDSSISKSCLPDRITYSTLMNALCKEGRFD 529

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA   L EM  K I PDS+ Y+  I+GYC  G    A  +  +M  +   P+  +Y  LI
Sbjct: 530 EAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTSLAIKVLRDMEKRSCNPSTRSYNLLI 589

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
           +   ++ +  E  +L      KG+  +++ +N+LI   C  G + +A  LL EM + ++ 
Sbjct: 590 WGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLIKSFCGRGMVNKAMPLLDEMLQNEIV 649

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLD--------------------QMKRRGIKPDHI- 256
           P+  ++  L+   C+      A+R+ D                        R I+  +I 
Sbjct: 650 PNVTSFGLLIKAFCKTADFSAAQRVFDVALSTCGQKEVLYCLMCTELSTYARWIEAKNIL 709

Query: 257 ------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                   +     Y  +I GLC   E D A  LL+  ++KG + D  T+  +I+ ++  
Sbjct: 710 ETALEMRISIQSFPYKRIIAGLCDVSEADHAHSLLKLFIAKGYSFDPATFMPVIDALSES 769

Query: 311 DK 312
            K
Sbjct: 770 GK 771



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 146/321 (45%), Gaps = 18/321 (5%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+   PD  TY + ++ +CKEGR +EA + L +M    + P +V Y+T I GYC  G   
Sbjct: 505 SKSCLPDRITYSTLMNALCKEGRFDEAKKKLVEMIGKDISPDSVIYDTFIHGYCMHGKTS 564

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           +A     +M K+   P+  +YNLLI     ++K  E   ++ EM EKGI  + +TYN LI
Sbjct: 565 LAIKVLRDMEKRSCNPSTRSYNLLIWGFQEKQKSDEILKLMSEMKEKGISSNVMTYNSLI 624

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
             +C  G   KA  L DEM+   I P + ++  LI    K      A ++F+  L+    
Sbjct: 625 KSFCGRGMVNKAMPLLDEMLQNEIVPNVTSFGLLIKAFCKTADFSAAQRVFDVALSTCGQ 684

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            + V++  +     T      A ++L+    M++      Y  ++ G C   + + A  L
Sbjct: 685 KE-VLYCLMCTELSTYARWIEAKNILETALEMRISIQSFPYKRIIAGLCDVSEADHAHSL 743

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L     +G   D  +F P     +AL +   K  + D+  E + E+       D N   S
Sbjct: 744 LKLFIAKGYSFDPATFMP---VIDALSES-GKKHDADMLSEKMMEIA------DCNDGQS 793

Query: 303 LIEGIASV-------DKAAES 316
            + G+ +        DK AES
Sbjct: 794 AVSGVVTPRSRKHEQDKYAES 814



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 142/315 (45%), Gaps = 19/315 (6%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD +T  + +  +   GR++ A R+ + M       + +    L  GYC  G    A
Sbjct: 138 GATPDVFTRNALLEALSAAGRMDLARRVFDAMPARNEFSSGI----LARGYCRAGRSADA 193

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +  D M +  ++      N ++     E ++ EA+ ++  M  +G+ P+ +T+N  I+ 
Sbjct: 194 LAVLDAMPEMNLV----VCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISA 249

Query: 125 YCRCGNAKKAFSLHDEM---IHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            C+ G   +A+ + ++M     +G+ +P  +T+  ++        + EA  L +     G
Sbjct: 250 LCKAGRVLEAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDIMRCGG 309

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            L  +  +N  + G   NG +  A  LL EM    V P+  TYN ++ G C++GK  + R
Sbjct: 310 FLRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKAFDVR 369

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ D ++   + PD +       TY +L+   C       A  +L EM  KG  P+  TY
Sbjct: 370 RVEDFVRSGVMTPDVV-------TYTSLLHAYCSKGNTTAANRILDEMAQKGCAPNLFTY 422

Query: 301 FSLIEGIASVDKAAE 315
             L++ +    +  E
Sbjct: 423 NVLLQSLLKAGRTTE 437



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 128/295 (43%), Gaps = 49/295 (16%)

Query: 57  NKGNLEMAFS---FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           ++    +AFS   FR      G  P    YN L+   L E ++   + + K++   G  P
Sbjct: 82  HRSPFPLAFSLSAFRSLRALGGAAPPTPVYNRLLLAALREDRLDLVEALYKDLLLAGATP 141

Query: 114 DSITYN-------------------------------ILINGYCRCGNAKKAFSLHDEMI 142
           D  T N                               IL  GYCR G +  A ++ D M 
Sbjct: 142 DVFTRNALLEALSAAGRMDLARRVFDAMPARNEFSSGILARGYCRAGRSADALAVLDAM- 200

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
               +  ++   +++    ++ R+ EA++L +   A+G+ P++V FN  I   C  G + 
Sbjct: 201 ---PEMNLVVCNTVVAGFCREGRVDEAERLVDRMRAQGLAPNVVTFNGRISALCKAGRVL 257

Query: 203 RAFSLLKEMDRMK----VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
            A+ +  +M          PD+VT++ ++ G C  G V+EA  L+D M+  G       F
Sbjct: 258 EAYRIFNDMQEAWEQGLPRPDQVTFDVMLSGFCDAGMVDEATVLVDIMRCGG-------F 310

Query: 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
                +YN  + GL KN     A+ELL EM  +G+ P+  TY  +++G+    KA
Sbjct: 311 LRKVESYNRWLSGLVKNGRVGEAQELLSEMAHEGVQPNSYTYNIIVDGLCKEGKA 365


>gi|297849764|ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338605|gb|EFH69022.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 804

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 178/351 (50%), Gaps = 41/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PDS TY   V G    G +  A  +++ M + GL P  +TY  L+ G C  GN
Sbjct: 302 MNKHGVEPDSVTYNILVKGFHLLGMISGAGEVIQDMLDKGLSPDVITYTILLCGQCQLGN 361

Query: 61  LEMAFSFRDEMVKQGI-MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           ++M      +M+ +G  + +   Y++++  L    ++ EA  +  ++   G+ PD + Y+
Sbjct: 362 IDMGLILLKDMLSRGFELKSIIPYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYS 421

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I+G C+ G    A  ++DEM +K I P   T  +++  L ++  ++EA  L ++ ++ 
Sbjct: 422 IVIHGLCKLGKFDMAVRVYDEMCYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISS 481

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G   DI+++N +IDG+  +G IE A  L K      + P+  T+N+L++G C+   + EA
Sbjct: 482 GDTLDIILYNIVIDGYAKSGCIEEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEA 541

Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
           R++LD +K  G+ P  +S+                             PT +TY+ + +G
Sbjct: 542 RKILDVIKLYGLVPSVVSYTTLMDAYANCGSIKSIEELRREMKAEGIPPTNVTYSVIFKG 601

Query: 272 LCKNQEGDLAEELLRE------------MVSKGITPDDNTYFSLIEGIASV 310
           LC+  + +   ++LRE            M S+GITPD  TY ++I+ +  V
Sbjct: 602 LCRGWKLENCNQVLRERILEKFNHVLRDMESEGITPDQITYNTIIQYLCRV 652



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 160/321 (49%), Gaps = 20/321 (6%)

Query: 1   MKSRGVQPDSYT-YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M SRG +  S   Y   +SG+CK GR++EA  +   ++  GL P  V Y+ +I G C  G
Sbjct: 372 MLSRGFELKSIIPYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLG 431

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +MA    DEM  + I+P + T   ++  L  +  ++EA  +L  +   G   D I YN
Sbjct: 432 KFDMAVRVYDEMCYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSGDTLDIILYN 491

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I+GY + G  ++A  L    I  GI P + T+ SLI+   K   + EA ++ +     
Sbjct: 492 IVIDGYAKSGCIEEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEARKILDVIKLY 551

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P +V +  L+D +   G+I+    L +EM    + P  VTY+ +  G CR  K+E  
Sbjct: 552 GLVPSVVSYTTLMDAYANCGSIKSIEELRREMKAEGIPPTNVTYSVIFKGLCRGWKLENC 611

Query: 240 RRLLDQ------------MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
            ++L +            M+  GI PD I       TYN +IQ LC+ +    A EL ++
Sbjct: 612 NQVLRERILEKFNHVLRDMESEGITPDQI-------TYNTIIQYLCRVKHLSRAFELFKK 664

Query: 288 MVSKGITPDDNTYFSLIEGIA 308
           M S+ + P   TY  LI+ + 
Sbjct: 665 MKSQNLDPTSATYNILIDSLC 685



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 176/340 (51%), Gaps = 35/340 (10%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           + +TY + V G+C++ +LE+A   L   +   + P+ V++N+++  YC  G ++MA SF 
Sbjct: 205 NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSSYCKLGFVDMAKSFF 264

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             ++K G++P+  ++N+LI+ L +   + EA ++  +M + G+ PDS+TYNIL+ G+   
Sbjct: 265 CTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILVKGFHLL 324

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ---LFENFLAKGM-LPD 184
           G    A  +  +M+ KG+ P ++TYT L   L  Q ++   D    L ++ L++G  L  
Sbjct: 325 GMISGAGEVIQDMLDKGLSPDVITYTIL---LCGQCQLGNIDMGLILLKDMLSRGFELKS 381

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ ++ ++ G C  G ++ A SL  +++   + PD V Y+ ++HG C+ GK + A R+ D
Sbjct: 382 IIPYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLGKFDMAVRVYD 441

Query: 245 QMKRRGIKPDHISFNPTRL----------------------------TYNALIQGLCKNQ 276
           +M  + I P+  +     L                             YN +I G  K+ 
Sbjct: 442 EMCYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSGDTLDIILYNIVIDGYAKSG 501

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             + A EL +  +  GITP+  T+ SLI G       AE+
Sbjct: 502 CIEEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEA 541



 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 166/335 (49%), Gaps = 29/335 (8%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           + + P   ++ S +S  CK G ++ A      + + GLVP+  ++N LI+G C  G++  
Sbjct: 235 KDIGPSVVSFNSIMSSYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAE 294

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M K G+ P + TYN+L+    +   +  A +++++M +KG+ PD ITY IL+ 
Sbjct: 295 ALELASDMNKHGVEPDSVTYNILVKGFHLLGMISGAGEVIQDMLDKGLSPDVITYTILLC 354

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQ-PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           G C+ GN      L  +M+ +G +  +++ Y+ ++  L K  R+ EA  LF +  A G+ 
Sbjct: 355 GQCQLGNIDMGLILLKDMLSRGFELKSIIPYSVMLSGLCKTGRVDEALSLFYDLEAYGLT 414

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+V ++ +I G C  G  + A  +  EM   ++ P+  T   +M G C++G + EAR L
Sbjct: 415 PDLVAYSIVIHGLCKLGKFDMAVRVYDEMCYKRILPNSRTLGAIMLGLCQKGMLLEARSL 474

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
           LD +   G   D I +N                            P   T+N+LI G CK
Sbjct: 475 LDSLISSGDTLDIILYNIVIDGYAKSGCIEEALELFKVAIESGITPNVATFNSLIYGYCK 534

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
            Q    A ++L  +   G+ P   +Y +L++  A+
Sbjct: 535 TQNIAEARKILDVIKLYGLVPSVVSYTTLMDAYAN 569



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 155/336 (46%), Gaps = 40/336 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+S T G+ + G+C++G L EA  +L+ +  +G     + YN +IDGY   G 
Sbjct: 443 MCYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSGDTLDIILYNIVIDGYAKSGC 502

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A       ++ GI P  +T+N LI+     + + EA  +L  +   G+VP  ++Y  
Sbjct: 503 IEEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEARKILDVIKLYGLVPSVVSYTT 562

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF-ENFLAK 179
           L++ Y  CG+ K    L  EM  +GI PT +TY+ +   L +  ++   +Q+  E  L K
Sbjct: 563 LMDAYANCGSIKSIEELRREMKAEGIPPTNVTYSVIFKGLCRGWKLENCNQVLRERILEK 622

Query: 180 -----------GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
                      G+ PD + +N +I   C   ++ RAF L K+M    + P   TYN L+ 
Sbjct: 623 FNHVLRDMESEGITPDQITYNTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNILID 682

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHIS----------------------------FNP 260
             C  G + +A R L  +++R +     +                            FN 
Sbjct: 683 SLCIYGCIRKADRFLYSLQKRNVSLSKFAYTTVIKAHCVKGDPEMAVILFNQLLDRGFNV 742

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +   Y+A+I  LC+      ++     M+S+GI+PD
Sbjct: 743 SIRDYSAVINRLCRRHLAIESKYFFCLMLSRGISPD 778



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 12/204 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ------------MKENGLVPTAVTY 48
           MK+ G+ P + TY     G+C+  +LE  +++L +            M+  G+ P  +TY
Sbjct: 583 MKAEGIPPTNVTYSVIFKGLCRGWKLENCNQVLRERILEKFNHVLRDMESEGITPDQITY 642

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           NT+I   C   +L  AF    +M  Q + PT++TYN+LI  L +   + +AD  L  + +
Sbjct: 643 NTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNILIDSLCIYGCIRKADRFLYSLQK 702

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           + +      Y  +I  +C  G+ + A  L ++++ +G   ++  Y+++I  L +++  IE
Sbjct: 703 RNVSLSKFAYTTVIKAHCVKGDPEMAVILFNQLLDRGFNVSIRDYSAVINRLCRRHLAIE 762

Query: 169 ADQLFENFLAKGMLPDIVMFNALI 192
           +   F   L++G+ PD+ +   +I
Sbjct: 763 SKYFFCLMLSRGISPDLDICEVMI 786


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY + ++G CK G L  A +++ ++    L P  +TY TLID YC    
Sbjct: 43  MKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQC 102

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    DEM  + ++P   TY  +++ L    K+ EA  + +EM E G+VP+  +Y  
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + GN  +AF L   M+ +GI   ++ YT+L+  L K      A+ +F+  L + 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V ++ALIDGHC  G++ +   LL+EM+   + P+ + Y++++ G  ++G + EA 
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M +R I P+          Y  LI G  K  +  +A +L +EM S+G+  ++   
Sbjct: 283 DVMRKMVQRNILPN-------VFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVI 335

Query: 301 FSLIEGIASVDKAAES 316
            S +  +    +  E+
Sbjct: 336 DSFVNNLKRSGRMEEA 351



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 174/346 (50%), Gaps = 31/346 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           KS G   D   Y   ++G+ K G+ E  S     M++ GL P + T+NT+I+ YC +GNL
Sbjct: 396 KSSGF--DVVAYNVLINGLFKLGKYESES-FHTGMRQLGLAPDSATFNTMINAYCKEGNL 452

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    +EM   G+ P + T N+L+  L    ++ +  D+L +M   G  P   T+  +
Sbjct: 453 GNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAV 512

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++   +   A     +HD+++  G++  + TY +LI    +   +  A  +F++ + KG+
Sbjct: 513 LDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGI 572

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           L DI+ +NALI G+C + ++++AF++  +M    V P+  TYN L+ G      ++EA  
Sbjct: 573 LADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAG 632

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           L++QMK RG+ P+  +++                            P   TYN LI    
Sbjct: 633 LVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFA 692

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           K ++   A+EL++EM  +GI P+ +TY  LI G   + K  E + S
Sbjct: 693 KGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKS 738



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 168/363 (46%), Gaps = 54/363 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PDS T+ + ++  CKEG L  A ++L +MK  GL P ++T N L+   C  G 
Sbjct: 427 MRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGE 486

Query: 61  LEMAFSFRDEMVKQGIMPTA-----------------------------------STYNL 85
           +E      ++M+  G  PT                                    STYN 
Sbjct: 487 IEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNT 546

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI        +  A  + K+M  KGI+ D ITYN LI+GYC   + KKAF++H +M+ +G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P + TY  L+  LS    + EA  L      +G++P+   ++ L+ GH   GN++   
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  EM      P   TYN L+    +  K+ +A+ L+ +M+ RGI P+         TY
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS-------TY 719

Query: 266 NALIQGLCK-NQEGDL-----------AEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           + LI G  K +++ +L           A+ L  EM  KG  P +NT   +   +A   K 
Sbjct: 720 DILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKK 779

Query: 314 AES 316
           A++
Sbjct: 780 ADA 782



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 159/317 (50%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD  TY   ++G+CK G++EEA  +  +M+E G+VP   +Y TLID    +GN
Sbjct: 113 MTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGN 172

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF  +  MV +GI      Y  L+  L        A+DM + + E+ +VP+ +TY+ 
Sbjct: 173 VAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSA 232

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G+  K   L  EM  K I P ++ Y+S++   +K+  + EA  +    + + 
Sbjct: 233 LIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN 292

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++ ++  LIDG+        A  L KEM    +  +    ++ ++   R G++EEA 
Sbjct: 293 ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEAD 352

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M  RG+ PD       R+ Y +++ G  K  +   A  + +EM  K    D   Y
Sbjct: 353 ELFKDMMSRGLLPD-------RVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAY 405

Query: 301 FSLIEGIASVDKAAESS 317
             LI G+  + K    S
Sbjct: 406 NVLINGLFKLGKYESES 422



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 143/260 (55%), Gaps = 12/260 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+ D  TY + +S  C+ G +  A+ + + M   G++   +TYN LI GYC   +L+ A
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F+   +M+ +G+ P   TYN+L+  L   R + EA  ++ +M E+G+VP++ TY+IL++G
Sbjct: 596 FAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSG 655

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + GN K+   L+ EMI KG  P   TY  LI   +K  +M +A +L +    +G+ P+
Sbjct: 656 HGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715

Query: 185 IVMFNALIDGHCT-------NGNIERAFS-----LLKEMDRMKVHPDEVTYNTLMHGRCR 232
              ++ LI G          N +++R++      L +EM+     P E T   +     +
Sbjct: 716 SSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAK 775

Query: 233 QGKVEEARRLLDQMKRRGIK 252
            GK  +A+R+L+++ ++ +K
Sbjct: 776 PGKKADAQRILNKLYKKKVK 795



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 12/191 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+  TY   + G+     ++EA+ ++ QMKE GLVP A TY+ L+ G+   GN
Sbjct: 602 MLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGN 661

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM+ +G +P   TYN+LI      +KM +A ++++EM  +GI P+S TY+I
Sbjct: 662 MKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDI 721

Query: 121 LINGYCRCG-------NAKKAFS-----LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           LI G+ +         + K+++      L +EM  KG  P   T   + F L+K  +  +
Sbjct: 722 LICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKAD 781

Query: 169 ADQLFENFLAK 179
           A ++      K
Sbjct: 782 AQRILNKLYKK 792



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 42/199 (21%)

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N+LI+GYCR G   +A                                    +L E   
Sbjct: 20  FNVLIDGYCRNGEISRAV-----------------------------------ELLEGMK 44

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G  PDIV +N L++G C  G++  A  L+ E+  + + P+ +TY TL+   C+   +E
Sbjct: 45  TEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLE 104

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  + D+M  + + PD +       TY  ++ GLCK+ + + A+ + REM   G+ P+ 
Sbjct: 105 DALYMYDEMTVKSLVPDVV-------TYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNR 157

Query: 298 NTYFSLIEGIASVDKAAES 316
            +Y +LI+ +      AE+
Sbjct: 158 FSYATLIDSLFKEGNVAEA 176



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FN LIDG+C NG I RA  LL+ M      PD VTYNTLM+G C+ G +  A++L+ ++ 
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                   ++  P  +TY  LI   CK+Q  + A  +  EM  K + PD  TY  ++ G+
Sbjct: 80  L-------VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 308 ASVDKAAESSN 318
               K  E+ +
Sbjct: 133 CKSGKVEEAKS 143


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 168/362 (46%), Gaps = 64/362 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK-- 58
           M + G  P    + S V   C+ G    A ++L++M + G  P  V YN LI G C+   
Sbjct: 103 MITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEE 162

Query: 59  --------------------------------------GNLEMAFSFRDEMVKQGIMPTA 80
                                                 G  E A++   EM+ +G +P  
Sbjct: 163 PGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDT 222

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           STY+ +I  L    K+ +A  + +EM   GI PD   Y  LI+ +C+ G  ++A +  DE
Sbjct: 223 STYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDE 282

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           M   G  P ++TYT+LI    K  ++ +A++++E  L+KG  P+IV + ALIDG C  G 
Sbjct: 283 MERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGK 342

Query: 201 IERAFSLLKEMDRMKV-----------------HPDEVTYNTLMHGRCRQGKVEEARRLL 243
           IE+A  + K M +  V                  P+  TY  L+ G C+  +V+EAR LL
Sbjct: 343 IEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLL 402

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             M   G +P+H+        Y+ALI G CK  + D A+E+   M+  G  P+  TY SL
Sbjct: 403 KSMSVEGCEPNHV-------VYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSL 455

Query: 304 IE 305
           I+
Sbjct: 456 ID 457



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 176/361 (48%), Gaps = 59/361 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD+ TY   +  +C   ++E+A ++ ++MK NG+ P    Y TLID +C  G 
Sbjct: 213 MMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGF 272

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A ++ DEM + G  P   TY  LIH  L  RK+ +A+++ + M  KG  P+ +TY  
Sbjct: 273 IEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTA 332

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGI-----------------QPTMLTYTSLIFVLSKQ 163
           LI+G C+ G  +KA  ++  M  + +                 +P + TY +L+  L K 
Sbjct: 333 LIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKA 392

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA---FSLLKE---------- 210
            ++ EA  L ++   +G  P+ V+++ALIDG C  G ++ A   F+ + E          
Sbjct: 393 YQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTY 452

Query: 211 ---MDRM-------------------KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
              +DR+                      P+ V Y  ++ G C+ GK +EA +L+  M+ 
Sbjct: 453 SSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEE 512

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +G        NP  +TY A+I G  K+   +   ELL++M SKG  P+  TY  LI    
Sbjct: 513 KGC-------NPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCC 565

Query: 309 S 309
           S
Sbjct: 566 S 566



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 160/357 (44%), Gaps = 50/357 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D +T G F   +CK G+  EA  +LE+ +    VP  V Y  +I G C    
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEKEE---FVPDTVLYTKMISGLCEASL 57

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A  F   M     +P   TY +L+   L + K+     +L  M  +G  P    +N 
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI----------------------- 157
           L++ YCR G+   A+ L  +M+  G QP  + Y  LI                       
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGE 177

Query: 158 -----FVLSKQN------------RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
                 VL+K N            +  +A  +    ++KG +PD   ++ +I   C    
Sbjct: 178 MLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASK 237

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E+AF L +EM R  + PD   Y TL+   C+ G +E+AR   D+M+R G  P+ +    
Sbjct: 238 VEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVV---- 293

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
              TY ALI    K+++   A E+   M+SKG TP+  TY +LI+G+    K  ++S
Sbjct: 294 ---TYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKAS 347



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 160/333 (48%), Gaps = 24/333 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  +     +F   +C  G+ E+A  ++ +M   G +P   TY+ +I   CN   
Sbjct: 178 MLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASK 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF    EM + GI P    Y  LI        + +A +   EM   G  P+ +TY  
Sbjct: 238 VEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTA 297

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y +     KA  +++ M+ KG  P ++TYT+LI  L K  ++ +A Q+++    + 
Sbjct: 298 LIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKEN 357

Query: 181 M-LPDIVM----------------FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
           + +PD+ M                + AL+DG C    ++ A  LLK M      P+ V Y
Sbjct: 358 VEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVY 417

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           + L+ G C+ GK++EA+ +   M   G       ++P   TY++LI  L K++  DLA +
Sbjct: 418 DALIDGCCKAGKLDEAQEVFTTMLECG-------YDPNVYTYSSLIDRLFKDKRLDLALK 470

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +L +M+     P+   Y  +I+G+  V K  E+
Sbjct: 471 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 503



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 28/338 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+ +TYG+ V G+CK  +++EA  +L+ M   G  P  V Y+ LIDG C  G L+ A  
Sbjct: 376 EPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQE 435

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               M++ G  P   TY+ LI  L  ++++  A  +L +M E    P+ + Y  +I+G C
Sbjct: 436 VFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLC 495

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A+ L   M  KG  P ++TYT++I    K  R+ +  +L +   +KG  P+ V
Sbjct: 496 KVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFV 555

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ--------GKVEE 238
            +  LI+  C+ G ++ A  LL+EM +         Y  ++ G  R+         ++ E
Sbjct: 556 TYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISE 615

Query: 239 ---------ARRLLDQMKRRG-------IKPDHISFNPTRLT----YNALIQGLCKNQEG 278
                     R L+D   + G       +  +  SF+P        +  LI+ L    + 
Sbjct: 616 NDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKA 675

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           D A EL  +M+S+G  P+ +    LI+G+  V++  E+
Sbjct: 676 DKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEA 713



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 35/277 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+ YTY S +  + K+ RL+ A ++L +M EN   P  V Y  +IDG C  G  + A
Sbjct: 444 GYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 503

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           +     M ++G  P   TY  +I       ++ +  ++L++M  KG  P+ +TY +LIN 
Sbjct: 504 YKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINH 563

Query: 125 YCRCGNAKKAFSLHDEM--------------IHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
            C  G   +A  L +EM              + +G     +    L F +S+ + +  A 
Sbjct: 564 CCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAP 623

Query: 171 Q---LFENFLAKGMLPDIVMFN------------------ALIDGHCTNGNIERAFSLLK 209
               L +NF+  G L   +  N                   LI+        ++AF L  
Sbjct: 624 VYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYA 683

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +M      P+      L+ G  R  + EEA +LLD +
Sbjct: 684 DMISRGSIPELSILVHLIKGLLRVNRWEEALQLLDSI 720



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 41/213 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G  P+  TY + + G  K GR+E+   +L+QM   G  P  VTY  LI+  C+ G 
Sbjct: 510 MEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGL 569

Query: 61  LEMAFSFRDEMVKQGIMPT-ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A    +EM KQ   P   + Y  +I      R+ + +  +  E+ E   VP +  Y 
Sbjct: 570 LDEAHKLLEEM-KQTYWPRHVAGYRKVIEGF--NREFIASLYLSFEISENDSVPVAPVYR 626

Query: 120 ILINGYCRCG-------------------------------------NAKKAFSLHDEMI 142
           +LI+ + + G                                      A KAF L+ +MI
Sbjct: 627 VLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMI 686

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
            +G  P +     LI  L + NR  EA QL ++
Sbjct: 687 SRGSIPELSILVHLIKGLLRVNRWEEALQLLDS 719


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 170/316 (53%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G  PD  TY + ++G CK G L  A +++ ++    L P  +TY TLID YC    
Sbjct: 43  MKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQC 102

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A    DEM  + ++P   TY  +++ L    K+ EA  + +EM E G+VP+  +Y  
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + GN  +AF L   M+ +GI   ++ YT+L+  L K      A+ +F+  L + 
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEES 222

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V ++ALIDGHC  G++ +   LL+EM+   + P+ + Y++++ G  ++G + EA 
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            ++ +M +R I P+          Y  LI G  K  +  +A +L +EM S+G+  ++   
Sbjct: 283 DVMRKMVQRNILPN-------VFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVI 335

Query: 301 FSLIEGIASVDKAAES 316
            S +  +    +  E+
Sbjct: 336 DSFVNNLKRSGRMEEA 351



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 174/346 (50%), Gaps = 31/346 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           KS G   D   Y   ++G+ K G+ E  S     M++ GL P + T+NT+I+ YC +GNL
Sbjct: 396 KSSGF--DVVAYNVLINGLFKLGKYESES-FHTGMRQLGLAPDSATFNTMINAYCKEGNL 452

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A    +EM   G+ P + T N+L+  L    ++ +  D+L +M   G  P   T+  +
Sbjct: 453 GNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAV 512

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           ++   +   A     +HD+++  G++  + TY +LI    +   +  A  +F++ + KG+
Sbjct: 513 LDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGI 572

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           L DI+ +NALI G+C + ++++AF++  +M    V P+  TYN L+ G      ++EA  
Sbjct: 573 LADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAG 632

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           L++QMK RG+ P+  +++                            P   TYN LI    
Sbjct: 633 LVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFA 692

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
           K ++   A+EL++EM  +GI P+ +TY  LI G   + K  E + S
Sbjct: 693 KGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKS 738



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 168/363 (46%), Gaps = 54/363 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PDS T+ + ++  CKEG L  A ++L +MK  GL P ++T N L+   C  G 
Sbjct: 427 MRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGE 486

Query: 61  LEMAFSFRDEMVKQGIMPTA-----------------------------------STYNL 85
           +E      ++M+  G  PT                                    STYN 
Sbjct: 487 IEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNT 546

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI        +  A  + K+M  KGI+ D ITYN LI+GYC   + KKAF++H +M+ +G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P + TY  L+  LS    + EA  L      +G++P+   ++ L+ GH   GN++   
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  EM      P   TYN L+    +  K+ +A+ L+ +M+ RGI P+         TY
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS-------TY 719

Query: 266 NALIQGLCK-NQEGDL-----------AEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           + LI G  K +++ +L           A+ L  EM  KG  P +NT   +   +A   K 
Sbjct: 720 DILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKK 779

Query: 314 AES 316
           A++
Sbjct: 780 ADA 782



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 159/317 (50%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD  TY   ++G+CK G++EEA  +  +M+E G+VP   +Y TLID    +GN
Sbjct: 113 MTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGN 172

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  AF  +  MV +GI      Y  L+  L        A+DM + + E+ +VP+ +TY+ 
Sbjct: 173 VAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSA 232

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G+  K   L  EM  K I P ++ Y+S++   +K+  + EA  +    + + 
Sbjct: 233 LIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRN 292

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LP++ ++  LIDG+        A  L KEM    +  +    ++ ++   R G++EEA 
Sbjct: 293 ILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEAD 352

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M  RG+ PD       R+ Y +++ G  K  +   A  + +EM  K    D   Y
Sbjct: 353 ELFKDMMSRGLLPD-------RVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAY 405

Query: 301 FSLIEGIASVDKAAESS 317
             LI G+  + K    S
Sbjct: 406 NVLINGLFKLGKYESES 422



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 141/257 (54%), Gaps = 12/257 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+ D  TY + +S  C+ G +  A+ + + M   G++   +TYN LI GYC   +L+ A
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F+   +M+ +G+ P   TYN+L+  L   R + EA  ++ +M E+G+VP++ TY+IL++G
Sbjct: 596 FAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSG 655

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + GN K+   L+ EMI KG  P   TY  LI   +K  +M +A +L +    +G+ P+
Sbjct: 656 HGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715

Query: 185 IVMFNALIDGHCT-------NGNIERAFS-----LLKEMDRMKVHPDEVTYNTLMHGRCR 232
              ++ LI G          N +++R++      L +EM+     P E T   +     +
Sbjct: 716 SSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAK 775

Query: 233 QGKVEEARRLLDQMKRR 249
            GK  +A+R+L+++ ++
Sbjct: 776 PGKKADAQRILNKLYKK 792



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 105/198 (53%), Gaps = 12/198 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV P+  TY   + G+     ++EA+ ++ QMKE GLVP A TY+ L+ G+   GN
Sbjct: 602 MLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGN 661

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++       EM+ +G +P   TYN+LI      +KM +A ++++EM  +GI P+S TY+I
Sbjct: 662 MKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDI 721

Query: 121 LINGYCRCG-------NAKKAFS-----LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           LI G+ +         + K+++      L +EM  KG  P   T   + F L+K  +  +
Sbjct: 722 LICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKAD 781

Query: 169 ADQLFENFLAKGMLPDIV 186
           A ++      K  + +++
Sbjct: 782 AQRILNKLYKKKTVQELL 799



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 42/199 (21%)

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N+LI+GYCR G   +A                                    +L E   
Sbjct: 20  FNVLIDGYCRNGEISRAV-----------------------------------ELLEGMK 44

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G  PDIV +N L++G C  G++  A  L+ E+  + + P+ +TY TL+   C+   +E
Sbjct: 45  TEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLE 104

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +A  + D+M  + + PD +       TY  ++ GLCK+ + + A+ + REM   G+ P+ 
Sbjct: 105 DALYMYDEMTVKSLVPDVV-------TYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNR 157

Query: 298 NTYFSLIEGIASVDKAAES 316
            +Y +LI+ +      AE+
Sbjct: 158 FSYATLIDSLFKEGNVAEA 176



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           FN LIDG+C NG I RA  LL+ M      PD VTYNTLM+G C+ G +  A++L+ ++ 
Sbjct: 20  FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
                   ++  P  +TY  LI   CK+Q  + A  +  EM  K + PD  TY  ++ G+
Sbjct: 80  L-------VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132

Query: 308 ASVDKAAESSN 318
               K  E+ +
Sbjct: 133 CKSGKVEEAKS 143


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 162/325 (49%), Gaps = 29/325 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRL------EEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           G QP    Y  F+  +C    L      E A +   +M + G+V   V  +      C  
Sbjct: 372 GCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGA 431

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G  + AF    EM+ +G +P  STY+ +I  L    K+ +A  + +EM + GIVP   TY
Sbjct: 432 GKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTY 491

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            ILI+ +C+ G  ++A +  DEM+     P ++TYTSLI    K  ++ +A++LFE  L 
Sbjct: 492 TILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLL 551

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM----------------DRMKVHPDEVT 222
           +G  P++V + ALIDGHC  G I++A  +   M                D     P+ +T
Sbjct: 552 EGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIIT 611

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y  L+ G C+  +VEEA  LLD M   G +P+ I        Y+ALI G CK  + + A+
Sbjct: 612 YGALVDGLCKANRVEEAHELLDTMSVNGCEPNQI-------VYDALIDGFCKTGKLENAQ 664

Query: 283 ELLREMVSKGITPDDNTYFSLIEGI 307
           E+  +M  +G  P+  TY SLI  +
Sbjct: 665 EVFVKMSERGYCPNLYTYSSLINSL 689



 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 171/361 (47%), Gaps = 60/361 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+G  PD  TY   +  +C   ++E+A  + E+MK+NG+VP+  TY  LID +C  G 
Sbjct: 444 MMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGL 503

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A ++ DEM++    P   TY  LIH  L  RK+ +A+ + + M  +G  P+ +TY  
Sbjct: 504 IQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTA 563

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ-----------------PTMLTYTSLIFVLSKQ 163
           LI+G+C+ G   KA  ++  M    I+                 P ++TY +L+  L K 
Sbjct: 564 LIDGHCKAGQIDKACQIYARM-QGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKA 622

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA------------------- 204
           NR+ EA +L +     G  P+ ++++ALIDG C  G +E A                   
Sbjct: 623 NRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTY 682

Query: 205 ----------------FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
                             +L +M      P+ V Y  ++ G C+ GK EEA RL+ +M+ 
Sbjct: 683 SSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEE 742

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G  P+ I       TY A+I G  K  + +   EL R+M SKG  P+  TY  LI    
Sbjct: 743 VGCYPNVI-------TYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCC 795

Query: 309 S 309
           S
Sbjct: 796 S 796



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 169/337 (50%), Gaps = 28/337 (8%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  TYG+ V G+CK  R+EEA  +L+ M  NG  P  + Y+ LIDG+C  G LE A   
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEV 666

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +M ++G  P   TY+ LI+ L  E+++     +L +M E    P+ + Y  +I+G C+
Sbjct: 667 FVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCK 726

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  ++A+ L  +M   G  P ++TYT++I    K  ++ +  +L+ +  +KG  P+ + 
Sbjct: 727 VGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFIT 786

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ-----GKVEEA--- 239
           +  LI+  C+ G ++ A  LL EM +        +Y  ++ G  R+     G ++E    
Sbjct: 787 YRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSEN 846

Query: 240 ---------RRLLDQMKRRGIKP------DHISFNPT-----RLTYNALIQGLCKNQEGD 279
                    R L+D   + G         + IS +P+     +  Y +LI+ L    + D
Sbjct: 847 ESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVD 906

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            A EL   M++K + P+ +T+  LI+G+  V K  E+
Sbjct: 907 KAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEA 943



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 23/332 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  +     +F   +C  G+ ++A  ++ +M   G VP   TY+ +I   C+   
Sbjct: 409 MLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASK 468

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF   +EM K GI+P+  TY +LI        + +A +   EM      P+ +TY  
Sbjct: 469 VEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTS 528

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-- 178
           LI+ Y +      A  L + M+ +G +P ++TYT+LI    K  ++ +A Q++       
Sbjct: 529 LIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDI 588

Query: 179 --------------KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
                             P+I+ + AL+DG C    +E A  LL  M      P+++ Y+
Sbjct: 589 ESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYD 648

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L+ G C+ GK+E A+ +  +M  RG       + P   TY++LI  L K +  DL  ++
Sbjct: 649 ALIDGFCKTGKLENAQEVFVKMSERG-------YCPNLYTYSSLINSLFKEKRLDLVLKV 701

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L +M+    TP+   Y  +I+G+  V K  E+
Sbjct: 702 LSKMLENSCTPNVVIYTDMIDGLCKVGKTEEA 733



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 153/390 (39%), Gaps = 85/390 (21%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+  Y   VSG+C+    +EA  +L++M+    +P  VTY  L+ G   KG L      
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRI 329

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC- 126
              M+ +G  P    +N L+H     R    A  + K+M + G  P  + YNI I   C 
Sbjct: 330 LSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICS 389

Query: 127 ------------------------------------RC----GNAKKAFSLHDEMIHKGI 146
                                               RC    G   KAF +  EM+ KG 
Sbjct: 390 NEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGF 449

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P   TY+ +I  L   +++ +A  LFE     G++P +  +  LID  C  G I++A +
Sbjct: 450 VPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARN 509

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF-------- 258
              EM R    P+ VTY +L+H   +  KV +A +L + M   G KP+ +++        
Sbjct: 510 WFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHC 569

Query: 259 ------------------------------------NPTRLTYNALIQGLCKNQEGDLAE 282
                                                P  +TY AL+ GLCK    + A 
Sbjct: 570 KAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAH 629

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           ELL  M   G  P+   Y +LI+G     K
Sbjct: 630 ELLDTMSVNGCEPNQIVYDALIDGFCKTGK 659



 Score =  130 bits (328), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 154/359 (42%), Gaps = 54/359 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G + D  T G F   +CK GR  +A  +LE+ +    VP  V YN ++ G C    
Sbjct: 231 MSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKEE---FVPDTVFYNRMVSGLCEASL 287

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    D M     +P   TY +L+   L + ++     +L  M  +G  P+   +N 
Sbjct: 288 FQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNS 347

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI----------------------- 157
           L++ YC+  +   A+ L  +MI  G QP  L Y   I                       
Sbjct: 348 LVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYS 407

Query: 158 ------FVLSKQN------------RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
                  VL+K N            +  +A ++    ++KG +PD   ++ +I   C   
Sbjct: 408 EMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDAS 467

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            +E+AF L +EM +  + P   TY  L+   C+ G +++AR   D+M R    P+ +   
Sbjct: 468 KVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVV--- 524

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKAAE 315
               TY +LI    K ++   A +L   M+ +G  P+  TY +LI+G      +DKA +
Sbjct: 525 ----TYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQ 579



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 126/282 (44%), Gaps = 37/282 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+ YTY S ++ + KE RL+   ++L +M EN   P  V Y  +IDG C  G 
Sbjct: 670 MSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGK 729

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A+    +M + G  P   TY  +I       K+ +  ++ ++M  KG  P+ ITY +
Sbjct: 730 TEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRV 789

Query: 121 LINGYCRCGNAKKAFSLHDEM--------------IHKGIQPTMLTYTSLIFVLSKQNRM 166
           LIN  C  G   +A  L DEM              I +G     +T   L+  LS +N  
Sbjct: 790 LINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELS-ENES 848

Query: 167 IEADQLF----ENFLAKGML-------------PDIV-----MFNALIDGHCTNGNIERA 204
           +  + L+    +NF+  G L             P +      ++ +LI+       +++A
Sbjct: 849 VPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKA 908

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           F L   M    V P+  T+  L+ G  R GK +EA +L D +
Sbjct: 909 FELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSI 950



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 132/307 (42%), Gaps = 16/307 (5%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
            +   C+ G    A   L ++K+ G   +  TYN LI  +     L+ AF    EM   G
Sbjct: 176 LIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSG 235

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
                 T     + L    K     D L  + ++  VPD++ YN +++G C     ++A 
Sbjct: 236 FRMDGCTLGCFAYSLC---KAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAM 292

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            + D M      P ++TY  L+     + ++    ++    + +G  P+  MFN+L+  +
Sbjct: 293 DILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAY 352

Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK------VEEARRLLDQMKRR 249
           C + +   A+ L K+M +    P  + YN  +   C   +      +E A +   +M   
Sbjct: 353 CKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDL 412

Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           G+  + ++        +   + LC   + D A E++ EM+SKG  PDD+TY  +I  +  
Sbjct: 413 GVVLNKVNV-------SNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCD 465

Query: 310 VDKAAES 316
             K  ++
Sbjct: 466 ASKVEKA 472



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 43/265 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+   Y   + G+CK G+ EEA R++ +M+E G  P  +TY  +IDG+   G 
Sbjct: 705 MLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGK 764

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI------------HELLME-------------RK 95
           +E       +M  +G  P   TY +LI            H LL E             RK
Sbjct: 765 IEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRK 824

Query: 96  MVEADD--------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
           ++E  +        +L E+ E   VP    Y ILI+ + + G  + A +L +E+      
Sbjct: 825 IIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEI---SSS 881

Query: 148 PTMLT-----YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
           P++       YTSLI  LS  +++ +A +L+ + + K ++P++  F  LI G    G  +
Sbjct: 882 PSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQ 941

Query: 203 RAFSLLKEMDRMKVH--PDEVTYNT 225
            A  L   + +M  H   + V Y T
Sbjct: 942 EALQLSDSICQMVCHVCSNFVNYKT 966


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 168/314 (53%), Gaps = 8/314 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P+ +T    +  +CK+  +E A ++ ++M   G+VP  VTY T++ GY ++G++  A
Sbjct: 187 GVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGA 246

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                E+   G +P A+TY +L+   + + +  +A  ++ EM E G+ P+ ITY ++I G
Sbjct: 247 KRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILG 306

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+   + +A +L ++M+ K   P       +I VL  + R+ EA +++E  L K   PD
Sbjct: 307 YCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPD 366

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             + + LI   C  GNI  A  L  E +R  +    +TYNTL+ G C  G++ EA RL D
Sbjct: 367 NAITSTLIHWLCKEGNIWEARKLFNEFERGTIS-SLLTYNTLIAGMCEMGELCEAARLWD 425

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +G  P+         TYN LI+G  K  +     +++ EM+ KG   +++TY  L+
Sbjct: 426 DMLEKGCVPNE-------FTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILV 478

Query: 305 EGIASVDKAAESSN 318
           EG+  + K  E  N
Sbjct: 479 EGLLKLGKREELLN 492



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 147/292 (50%), Gaps = 8/292 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ P+  TY + + G    G +  A R+  ++ ++G +P A TY  L+DGY  +G 
Sbjct: 218 MPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGR 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM + G+ P   TY ++I     ERK  EA ++L +M EK  +P+S     
Sbjct: 278 FTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCK 337

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C  G  K+A  + ++++ K   P     ++LI  L K+  + EA +LF  F  +G
Sbjct: 338 VIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEF-ERG 396

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +  ++ +N LI G C  G +  A  L  +M      P+E TYN L+ G  + GK +E  
Sbjct: 397 TISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVI 456

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +++++M  +G   +         TY  L++GL K  + +    +L  ++S G
Sbjct: 457 KVVEEMLDKGCLLNES-------TYLILVEGLLKLGKREELLNILSMIISSG 501



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 146/327 (44%), Gaps = 44/327 (13%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE-MAFSFRDEMVKQGIMPTASTY 83
           R + A +   +++  G+  +  + NTL++          +   F+    K G++P   T 
Sbjct: 136 RPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTC 195

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVP------------------------------ 113
           N+LI  L  +  +  A  +  EM   GIVP                              
Sbjct: 196 NILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFD 255

Query: 114 -----DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
                D+ TY IL++GY + G    A  + DEM   G++P  +TY  +I    K+ +  E
Sbjct: 256 HGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGE 315

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A  L  + L K  +P+  +   +ID  C  G ++ A  + +++ +    PD    +TL+H
Sbjct: 316 ALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIH 375

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
             C++G + EAR+L ++ +R  I         + LTYN LI G+C+  E   A  L  +M
Sbjct: 376 WLCKEGNIWEARKLFNEFERGTIS--------SLLTYNTLIAGMCEMGELCEAARLWDDM 427

Query: 289 VSKGITPDDNTYFSLIEGIASVDKAAE 315
           + KG  P++ TY  LI+G   V KA E
Sbjct: 428 LEKGCVPNEFTYNMLIKGFLKVGKAKE 454



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 8/238 (3%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TY+ +I+ L   R     + +L E+ + GI      +  +I  Y      K A      +
Sbjct: 88  TYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRI 147

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK-GMLPDIVMFNALIDGHCTNGN 200
              G++ ++ +  +L+  L + NR      LF+   +K G++P++   N LI   C   +
Sbjct: 148 QTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKND 207

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E A  +  EM  M + P+ VTY T++ G   +G +  A+R+  ++   G  PD      
Sbjct: 208 VEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDAT---- 263

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TY  L+ G  K      A +++ EM   G+ P+D TY  +I G     K+ E+ N
Sbjct: 264 ---TYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALN 318



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 1/119 (0%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG      TY + ++GMC+ G L EA+R+ + M E G VP   TYN LI G+   G  + 
Sbjct: 395 RGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKE 454

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                +EM+ +G +   STY +L+  LL   K  E  ++L  +   G V D   +N+ +
Sbjct: 455 VIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNILSMIISSGAV-DFKAWNLFV 512


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 168/338 (49%), Gaps = 31/338 (9%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D YTYG  ++G+CK G    A   L +M+E    P  V Y+T++DG C  G +  A +  
Sbjct: 181 DVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLC 240

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM  +G+ P   TY  LI  L    +  E   +L EM + G+  D  T NIL++ +C+ 
Sbjct: 241 SEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKE 300

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G   +A S+   MI  G  P + TY SLI +   QN+M EA ++F   +++G LPDIV+F
Sbjct: 301 GKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVF 360

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            +LI G C + NI +   LL+EM +M   PD VT+ TL+ G C+ G+   A+ L   M +
Sbjct: 361 TSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHK 420

Query: 249 RGIKP----------------------------DHISFNPTRLTYNALIQGLCKNQEGDL 280
            G  P                            +  + +   + Y+ L+ G+C   + + 
Sbjct: 421 YGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNA 480

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIA---SVDKAAE 315
           A EL   +  KG+  +  TY  +I+G+    S+DKA +
Sbjct: 481 AWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAED 518



 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 161/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV+P+  TY   + G+C  GR +E   +L++M + G+     T N L+D +C +G 
Sbjct: 243 MSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGK 302

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    M+  G  P   TYN LIH   ++ KM EA  +   M  +G +PD + +  
Sbjct: 303 VMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTS 362

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+  N  K   L +EM   G  P ++T+T+LI    +  R + A +LF N    G
Sbjct: 363 LIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYG 422

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++     ++DG C    +  A SL + M++  +  + V Y+ L+ G C  GK+  A 
Sbjct: 423 QVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAW 482

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G++ +         TY  +I+GLCK    D AE+LL  M   G  PD+ TY
Sbjct: 483 ELFSSLPGKGLQIN-------VYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTY 535

Query: 301 FSLIEGIASVDKAAES 316
              ++G+ +  + A S
Sbjct: 536 NVFVQGLLTKKEIARS 551



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 151/310 (48%), Gaps = 7/310 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G++ D+ T    ++ +C+   +     +L  M + GL PT +T   LI+G C +GN+ 
Sbjct: 105 SLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVA 164

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    D M K        TY +LI+ L      + A + L++M E+   P+ + Y+ ++
Sbjct: 165 QAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIM 224

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G C+ G   +A +L  EM  KG++P ++TY  LI  L    R  E   L +  +  GM 
Sbjct: 225 DGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMR 284

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            D+   N L+D  C  G + +A S++  M      PD  TYN+L+H  C Q K+ EA R+
Sbjct: 285 LDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRV 344

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              M  RG  PD + F        +LI G CK++  +    LL EM   G  PD  T+ +
Sbjct: 345 FHLMVSRGCLPDIVVF-------TSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTT 397

Query: 303 LIEGIASVDK 312
           LI G     +
Sbjct: 398 LIGGFCQAGR 407



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 128/275 (46%), Gaps = 8/275 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD +TY S +   C + ++ EA R+   M   G +P  V + +LI G+C   N+   
Sbjct: 317 GEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKV 376

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM K G +P   T+  LI       + + A ++   M + G VP+  T  ++++G
Sbjct: 377 MHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDG 436

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A SL + M    +   ++ Y+ L+  +    ++  A +LF +   KG+  +
Sbjct: 437 LCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQIN 496

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +  +I G C  G++++A  LL  M+     PD  TYN  + G   + ++  + + L 
Sbjct: 497 VYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLT 556

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            M+ +G   D  +   T +T N L        EGD
Sbjct: 557 IMRDKGFSVDAAT---TEITINYL-----STNEGD 583



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 11/267 (4%)

Query: 56  CNKG---NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGI 111
           C  G   N++ A      M     +P+   + LL+  ++  +    A  ++K +    GI
Sbjct: 49  CKSGKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLGI 108

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
             D+IT NI+IN  CR       FS+   M   G++PT++T T+LI  L  Q  + +A  
Sbjct: 109 EADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVG 168

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L ++        D+  +  LI+G C  G+   A   L++M+     P+ V Y+T+M G C
Sbjct: 169 LVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLC 228

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + G V EA  L  +M  +G++P+ +       TY  LIQGLC          LL EM+  
Sbjct: 229 KDGLVSEALNLCSEMSGKGVRPNLV-------TYACLIQGLCNFGRWKETGSLLDEMIKM 281

Query: 292 GITPDDNTYFSLIEGIASVDKAAESSN 318
           G+  D  T   L++      K  ++ +
Sbjct: 282 GMRLDLQTLNILVDAFCKEGKVMQAKS 308



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 4/230 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD   + S + G CK+  + +   +LE+M + G VP  VT+ TLI G+C  G 
Sbjct: 348 MVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGR 407

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M K G +P   T  +++  L     + EA  + + M +  +  + + Y+I
Sbjct: 408 PLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSI 467

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C  G    A+ L   +  KG+Q  + TYT +I  L KQ  + +A+ L  N    G
Sbjct: 468 LLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENG 527

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD----EVTYNTL 226
            LPD   +N  + G  T   I R+   L  M       D    E+T N L
Sbjct: 528 CLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEITINYL 577


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 160/303 (52%), Gaps = 7/303 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R  +P+   Y + +  +CK   + EA  +  +M   G+    VTY+TLI G+C  G L+ 
Sbjct: 441 RLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKE 500

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EMV + I P   TY +L+  L  E K+ EA  +L  M +  + PD  TYN L+N
Sbjct: 501 AIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMN 560

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY      KKA  + + M   G+ P + TYT LI    K   + EA  LF+    K M+P
Sbjct: 561 GYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVP 620

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +++L+DG C +G I   + L+ EM       D +TYN+L+ G C+ G +++A  L 
Sbjct: 621 DTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALF 680

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++MK +GI+P+         T+  L+ GLCK      A+E+ +++++KG   D   Y  +
Sbjct: 681 NKMKDQGIRPN-------TFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVM 733

Query: 304 IEG 306
           I G
Sbjct: 734 IYG 736



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 160/293 (54%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD  TY   V  + KEG+++EA  +L  M +  + P   TYNTL++GY     
Sbjct: 508 MVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYE 567

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M   G+ P   TY +LI+     + + EA ++ KEM +K +VPD++TY+ 
Sbjct: 568 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSS 627

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G     + L DEM  +G    ++TY SLI  L K   + +A  LF     +G
Sbjct: 628 LVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQG 687

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+   F  L+DG C  G ++ A  + +++     H D   YN +++G C+QG +EEA 
Sbjct: 688 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEAL 747

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            +L +M+  G  P+ ++F       + +I  L K  E D AE+LLR+M+++G+
Sbjct: 748 TMLSKMEENGCIPNAVTF-------DIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 170/375 (45%), Gaps = 77/375 (20%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+QPD +T    ++  C  G++     +L ++ + G  P+ VT NTLI G C KG ++ 
Sbjct: 336 KGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKK 395

Query: 64  AFSFRDEMVKQGIM-----------------------------------PTASTYNLLIH 88
           A  F D+++ QG                                     P    Y+ +I 
Sbjct: 396 ALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIID 455

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            L   + + EA  +  EM  KGI  D +TY+ LI G+C  G  K+A  L +EM+ K I P
Sbjct: 456 ALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINP 515

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA------------------ 190
            + TYT L+  L K+ ++ EA  +    L   + PD+  +N                   
Sbjct: 516 DVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVF 575

Query: 191 -----------------LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
                            LI+G C +  ++ A +L KEM +  + PD VTY++L+ G C+ 
Sbjct: 576 NAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKS 635

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           G++     L+D+M+ RG   D I       TYN+LI GLCKN   D A  L  +M  +GI
Sbjct: 636 GRISYVWDLIDEMRDRGQPADVI-------TYNSLIDGLCKNGHLDKAIALFNKMKDQGI 688

Query: 294 TPDDNTYFSLIEGIA 308
            P+  T+  L++G+ 
Sbjct: 689 RPNTFTFTILLDGLC 703



 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 159/344 (46%), Gaps = 29/344 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  +  TY + + G C  G+L+EA  +L  M    + P   TYN L+D  C +G 
Sbjct: 159 MTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGK 218

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S    M+K  +     TY+ L+    +  ++ +A  +   M   G+ PD  +YNI
Sbjct: 219 VKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNI 278

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+     KA +L  EMI     P ++ +  ++   +K      A  L      KG
Sbjct: 279 MINGFCKIKRVDKALNLFKEMILSRFPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKG 337

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+   N LI+  C  G I   FS+L ++ +    P  VT NTL+ G C +G+V++A 
Sbjct: 338 IQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKAL 397

Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------RLT------YNALIQGL 272
              D++  +G + + +S+                         RLT      Y+ +I  L
Sbjct: 398 HFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDAL 457

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           CK Q    A  L  EM  KGI+ D  TY +LI G   V K  E+
Sbjct: 458 CKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEA 501



 Score =  157 bits (397), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 170/370 (45%), Gaps = 62/370 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM------------------------ 36
           M   GV PD ++Y   ++G CK  R+++A  + ++M                        
Sbjct: 264 MSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHY 323

Query: 37  ----------KENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
                     +  G+ P   T N LI+ +C+ G +   FS   +++K+G  P+  T N L
Sbjct: 324 STAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTL 383

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           I  L ++ ++ +A     ++  +G   + ++Y  LING C+ G+ + A  L  ++  +  
Sbjct: 384 IKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLT 443

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           +P +  Y+++I  L K   + EA  LF     KG+  D+V ++ LI G C  G ++ A  
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIG 503

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------- 259
           LL EM    ++PD  TY  L+    ++GKV+EA+ +L  M +  +KPD  ++N       
Sbjct: 504 LLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYL 563

Query: 260 ---------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                                P   TY  LI G CK++  D A  L +EM  K + PD  
Sbjct: 564 LVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTV 623

Query: 299 TYFSLIEGIA 308
           TY SL++G+ 
Sbjct: 624 TYSSLVDGLC 633



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 8/293 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD+ T  + + G+C +G+++EA    +++   G     V+Y TLI+G C  G+   
Sbjct: 57  RGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRA 116

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  F  ++  +   P    YN +I  L   + + EA  +  EM  KGI  + +TY+ LI 
Sbjct: 117 AIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIY 176

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G  K+A  L + M+ K I P + TY  L+  L K+ ++ EA  +    L   +  
Sbjct: 177 GFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKS 236

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +++ ++ L+DG+     +++A  +   M  M V PD  +YN +++G C+  +V++A  L 
Sbjct: 237 NVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLF 296

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            +M         +S  P  + +N ++    K +    A  L   +  KGI PD
Sbjct: 297 KEMI--------LSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPD 341



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 158/342 (46%), Gaps = 41/342 (11%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q +  +Y + ++G+C+ G    A + L ++      P    YNT+ID  C    + 
Sbjct: 91  AQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVS 150

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+    EM  +GI     TY+ LI+   +  K+ EA  +L  M  K I P+  TYNIL+
Sbjct: 151 EAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILV 210

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G  K+A S+   M+   ++  ++TY++L+        + +A  +F      G+ 
Sbjct: 211 DALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT 270

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEM------------------DRMK--------- 215
           PD+  +N +I+G C    +++A +L KEM                   +MK         
Sbjct: 271 PDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLS 330

Query: 216 -------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
                  + PD  T N L++  C  G++     +L ++ +RG       + P+ +T N L
Sbjct: 331 HRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRG-------YPPSTVTLNTL 383

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
           I+GLC   +   A     +++++G   +  +Y +LI G+  +
Sbjct: 384 IKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKI 425



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 132/264 (50%), Gaps = 7/264 (2%)

Query: 32  MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91
           +L ++ + G  P  VT NTLI G C KG ++ A  F D+++ QG      +Y  LI+ + 
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVC 109

Query: 92  MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
                  A   L+++  +   P+   YN +I+  C+     +A+ L  EM  KGI   ++
Sbjct: 110 RIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVV 169

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           TY++LI+      ++ EA  L    + K + P++  +N L+D  C  G ++ A S+L  M
Sbjct: 170 TYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVM 229

Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
            +  V  + +TY+TLM G     +V++A+ + + M   G+ PD  S       YN +I G
Sbjct: 230 LKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHS-------YNIMING 282

Query: 272 LCKNQEGDLAEELLREMVSKGITP 295
            CK +  D A  L +EM+     P
Sbjct: 283 FCKIKRVDKALNLFKEMILSRFPP 306



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 10/254 (3%)

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           ++ S   +++K+G  P   T N LI  L ++ ++ EA     ++  +G   + ++Y  LI
Sbjct: 46  VSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLI 105

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           NG CR G+ + A     ++  +  +P +  Y ++I  L K   + EA  LF     KG+ 
Sbjct: 106 NGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGIS 165

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            ++V ++ LI G C  G ++ A  LL  M    ++P+  TYN L+   C++GKV+EA+ +
Sbjct: 166 ANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSV 225

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           L  M +  +K + I       TY+ L+ G     E   A+ +   M   G+TPD ++Y  
Sbjct: 226 LAVMLKACVKSNVI-------TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNI 278

Query: 303 LIEG---IASVDKA 313
           +I G   I  VDKA
Sbjct: 279 MINGFCKIKRVDKA 292



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 105/182 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD+ TY S V G+CK GR+     ++++M++ G     +TYN+LIDG C  G+
Sbjct: 613 MHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGH 672

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +  ++M  QGI P   T+ +L+  L    ++ +A ++ +++  KG   D   YN+
Sbjct: 673 LDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNV 732

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G+C+ G  ++A ++  +M   G  P  +T+  +I  L K++   +A++L    +A+G
Sbjct: 733 MIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792

Query: 181 ML 182
           +L
Sbjct: 793 LL 794


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 7/302 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD   Y + + G+CK+  + +A  +  +M E  + P  VTY +LI G+C  G L+ AF 
Sbjct: 186 RPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFG 245

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             +EMV + + P   T+N L+  L  E KM EA  ++  M ++G+ PD  TYN L++GY 
Sbjct: 246 LLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYF 305

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
               A KA ++ + M   G+   + +Y+ +I  LSK   + EA  LFE    + ++PD+V
Sbjct: 306 LVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVV 365

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +++LIDG C +G I  A   + EM      P+ +TY +L+   C+  +V++A  LL ++
Sbjct: 366 AYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKI 425

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           K +GI+ +         TYN L+ GLCK+     A+++ ++++ KG   D  TY  +I G
Sbjct: 426 KDQGIQAN-------MYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMING 478

Query: 307 IA 308
           + 
Sbjct: 479 LC 480



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 170/339 (50%), Gaps = 42/339 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD  TY + + G+C  G+++E+    +++   G+    V+Y TLI+G C  G    A
Sbjct: 114 GYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPA 173

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                ++  +   P    YN +I  L  ++ + +A D+  EM EK + P+ +TY  LI G
Sbjct: 174 LRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYG 233

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G   KAF L +EM+ K + P + T+ +L+  L K+ +M EA  L    + +G+ PD
Sbjct: 234 FCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPD 293

Query: 185 IVMFNALIDGHCT---NGNIERAFSLLKEM----------------DRMK---------- 215
           +  +NAL+DG+      G  +  F+++ +M                 +MK          
Sbjct: 294 VFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFE 353

Query: 216 ------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
                 V PD V Y++L+ G C+ G++  A + +D+M  RG  P+ I       TY +LI
Sbjct: 354 GMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVI-------TYTSLI 406

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             LCK+ + D A  LL+++  +GI  +  TY  L++G+ 
Sbjct: 407 DALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLC 445



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 163/311 (52%), Gaps = 7/311 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V P+  TY S + G C  G+L++A  +L +M    + P   T+NTL+DG C +G 
Sbjct: 215 MFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGK 274

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    M+K+G+ P   TYN L+    + ++  +A ++   M + G+  D  +Y++
Sbjct: 275 MREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSV 334

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  +     +A  L + M ++ + P ++ Y+SLI  L K  R+  A +  +    +G
Sbjct: 335 MISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRG 394

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+++ + +LID  C +  +++A +LLK++    +  +  TYN L+ G C+ G++ +A+
Sbjct: 395 QPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQ 454

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   +  +G        N   +TY+ +I GLCK    D A  LL +M  KG  PD   Y
Sbjct: 455 KVFQDLLMKG-------HNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAY 507

Query: 301 FSLIEGIASVD 311
            ++I      D
Sbjct: 508 ETIINAFFEKD 518



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 158/290 (54%), Gaps = 9/290 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + V P+  T+ + V G+CKEG++ EA  ++  M + G+ P   TYN L+DGY     
Sbjct: 250 MVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKE 309

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +  + M + G+     +Y+++I  L   + + EA D+ + M  + ++PD + Y+ 
Sbjct: 310 AGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSS 369

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G    A    DEM  +G  P ++TYTSLI  L K +++ +A  L +    +G
Sbjct: 370 LIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQG 429

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEA 239
           +  ++  +N L+DG C +G +  A  + +++  MK H  D VTY+ +++G C++   +EA
Sbjct: 430 IQANMYTYNILVDGLCKDGRLTDAQKVFQDL-LMKGHNVDVVTYSIMINGLCKESLFDEA 488

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
             LL +M+ +G  PD I+       Y  +I    +    D AE+LLREM+
Sbjct: 489 LTLLSKMEDKGCVPDAIA-------YETIINAFFEKDMNDKAEKLLREMI 531



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 157/309 (50%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +G  +  + K         + ++M+ +G+    +T N LI+ YC+   +  AFS 
Sbjct: 47  PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P   TY  LI  L +  ++ E+ +    +  +GI  D ++Y  LING C+
Sbjct: 107 FAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCK 166

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G    A  L  ++  +  +P ++ Y ++I  L K   + +A  L+     K + P++V 
Sbjct: 167 IGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVT 226

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + +LI G C  G +++AF LL EM    V+P+  T+NTL+ G C++GK+ EA+ L+  M 
Sbjct: 227 YTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMM 286

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + G+ PD         TYNAL+ G    +E   A+ +   M   G+T D ++Y  +I G+
Sbjct: 287 KEGVGPD-------VFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGL 339

Query: 308 ASVDKAAES 316
           + +    E+
Sbjct: 340 SKMKMLDEA 348



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 165/344 (47%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+Q +  T    ++  C   ++  A  +  ++ + G  P  +TY TLI G C  G 
Sbjct: 75  MELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQ 134

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ + +F D +V QGI     +Y  LI+ L    +   A  +L+++  +   PD + YN 
Sbjct: 135 VKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNT 194

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G C+    + AF L+ EM  K + P ++TYTSLI+      ++ +A  L    + K 
Sbjct: 195 IIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKN 254

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  FN L+DG C  G +  A SL+  M +  V PD  TYN LM G     +  +A+
Sbjct: 255 VNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAK 314

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            + + M + G+  D  S++                            P  + Y++LI GL
Sbjct: 315 NVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGL 374

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           CK+   + A + + EM  +G  P+  TY SLI+ +     VDKA
Sbjct: 375 CKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKA 418



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 7/276 (2%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P  + +  ++       +  +       M   GI     T N+LI+     R++  A  +
Sbjct: 47  PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
             ++ + G  PD ITY  LI G C  G  K++ + HD ++ +GI+   ++Y +LI  L K
Sbjct: 107 FAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCK 166

Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
             +   A +L      +   PD+VM+N +IDG C +  +  AF L  EM   +V P+ VT
Sbjct: 167 IGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVT 226

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           Y +L++G C  G++++A  LL++M  + +       NP   T+N L+ GLCK  +   A+
Sbjct: 227 YTSLIYGFCIVGQLDKAFGLLNEMVLKNV-------NPNVCTFNTLVDGLCKEGKMREAK 279

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            L+  M+ +G+ PD  TY +L++G   V +A ++ N
Sbjct: 280 SLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKN 315


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 5/310 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           MK  GV P   T+ S +S + K GR   A ++ ++M +  G+ P   T+N LI G+C   
Sbjct: 191 MKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNS 250

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSIT 117
            ++  F F  EM +    P   TYN L+  L    K+  A +++K M +K   + P+ +T
Sbjct: 251 MVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVT 310

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI GYC   +  +A SL  EM+ +G++P  +TY +LI  L +  ++ +  ++ E  +
Sbjct: 311 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMV 370

Query: 178 AKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             G  +PD    N LI  HCT G +E AFS+ ++M  ++V PD  TY+ L+   C++G  
Sbjct: 371 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 430

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             A    D++  + I    +   P    YN + + LC N +   AE + R+++ +G T D
Sbjct: 431 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQD 489

Query: 297 DNTYFSLIEG 306
             +Y +LI G
Sbjct: 490 PPSYKTLILG 499



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 55/340 (16%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           PD  TY + V G+C+ G+++ A  +++ M  K   L P  VTY TLI GYC K ++  A 
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILING 124
           S   EMV +G+ P   TYN LI  L   +K+ +  ++L+ M G+ G +PD+ T N LI  
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKA 388

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-- 182
           +C  G  ++AFS+ ++M    +QP   TY+ L+  L ++     A++ F+    K +L  
Sbjct: 389 HCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLH 448

Query: 183 -----PDIVMFN----------------------------------ALIDGHCTNGNIER 203
                P +  +N                                   LI GHC  G  E 
Sbjct: 449 DVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEA 508

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
            F LL  M R    PD  TY  ++ G  ++G    A + L++M    +K  H+   PT  
Sbjct: 509 GFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKM----LKSSHL---PTTA 561

Query: 264 TYNALIQGL----CKNQEGDLAEELLREMVSKGITPDDNT 299
            +++++  L    C ++   L + +L   + + I    +T
Sbjct: 562 IFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHT 601



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 109/196 (55%), Gaps = 6/196 (3%)

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N LI  Y   G  +++  +   M   G+ P+++T+ SL+ ++ K+ R   A QLF+  L
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 178 -AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
              G+ PD   FN LI G C N  ++  F   KEM R K  PD VTYNTL+ G CR GKV
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + A  ++  M ++   P+    +P  +TY  LI+G C  Q+   A  LL EMVS+G+ P+
Sbjct: 288 KIAHNVVKGMVKKS--PN---LSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPN 342

Query: 297 DNTYFSLIEGIASVDK 312
             TY +LI+G+    K
Sbjct: 343 KITYNTLIQGLCEAQK 358



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 148/369 (40%), Gaps = 85/369 (23%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
           M SRG++P+  TY + + G+C+  +L++   +LE M  + G +P   T NTLI  +C  G
Sbjct: 334 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 393

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV------- 112
            LE AFS  ++M +  + P ++TY++L+  L        A++   E+ EK I+       
Sbjct: 394 KLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCK 453

Query: 113 ----------------------------------PDSITYNILINGYCRCGNAKKAFSLH 138
                                              D  +Y  LI G+CR G  +  F L 
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLL 513

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
             M+ +   P   TY  +I  L K+   + A +  E  L    LP   +F++++      
Sbjct: 514 VLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 573

Query: 199 GNIERAFSLLKEMDRMKV--------HPDEVTYNT------------------------L 226
           G    + SL+K M   ++        H   + Y +                        L
Sbjct: 574 GCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEEL 633

Query: 227 MHGRCRQGKVEEARRLL--DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           +   C+  K+ EA+++L     KR+ +  D  S          +I GLCK  +   A  L
Sbjct: 634 VSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCS---------TVISGLCKAHKVSEAFAL 684

Query: 285 LREMVSKGI 293
             E+V KG+
Sbjct: 685 YYELVEKGM 693



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN+LI  +   G  + +  + K M  + V P  VT+N+L+    ++G+   A++L D+M
Sbjct: 167 FFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEM 226

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                  D     P   T+N LI+G C N   D      +EM      PD  TY +L++G
Sbjct: 227 L------DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDG 280

Query: 307 IASVDKAAESSN 318
           +    K   + N
Sbjct: 281 LCRAGKVKIAHN 292


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 165/305 (54%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G QPD++TY   + G+CK GR+  A R+L +M++ G  P  VTY  ++  +C  G 
Sbjct: 321 MGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGM 380

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +   +  +EM  +G+   +  YN +I+ L  + +M EA  +++EM  +G  PD  +YN 
Sbjct: 381 WDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNT 440

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I   C     ++A  + + ++ +G+    +TY ++I  L +  R  +A +L +  +  G
Sbjct: 441 IIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG 500

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D+V +N LI   C +GN++R+  LL+EM    + P+ V+YN L+   C++ +V +A 
Sbjct: 501 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 560

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  QM  +G+ PD +       TYN LI GLCK      A  LL ++ ++ + PD  TY
Sbjct: 561 ELSKQMLNQGLAPDIV-------TYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITY 613

Query: 301 FSLIE 305
             LI 
Sbjct: 614 NILIS 618



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 165/338 (48%), Gaps = 38/338 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCK-------------------------------EGRLEEA 29
           M ++G  P   TYG  + G+C+                               EG+L EA
Sbjct: 255 MMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEA 314

Query: 30  SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89
           + + E M   G  P A TY+ L+ G C  G +  A     EM K+G  P   TY +++H 
Sbjct: 315 TELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHS 374

Query: 90  LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
                   +   +L+EM  KG+  +S  YN +I   C+ G   +A  L  EM  +G  P 
Sbjct: 375 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 434

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           + +Y ++I+ L    +M EA+ +FEN L +G++ + + +N +I     +G  + A  L K
Sbjct: 435 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAK 494

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM       D V+YN L+   C+ G V+ +  LL++M  +GIKP+++S       YN LI
Sbjct: 495 EMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVS-------YNILI 547

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             LCK +    A EL ++M+++G+ PD  TY +LI G+
Sbjct: 548 SELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGL 585



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 144/245 (58%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+  +S  Y   +  +CK+GR++EA  ++++M+  G  P   +YNT+I   CN   
Sbjct: 391 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 450

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    + ++++G++    TYN +IH LL + +  +A  + KEM   G   D ++YN 
Sbjct: 451 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 510

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C+ GN  ++  L +EM  KGI+P  ++Y  LI  L K+ R+ +A +L +  L +G
Sbjct: 511 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 570

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N LI+G C  G +  A +LL+++    VHPD +TYN L+   C+   +++A 
Sbjct: 571 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA 630

Query: 241 RLLDQ 245
            LL++
Sbjct: 631 MLLNR 635



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 158/299 (52%), Gaps = 11/299 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V P ++T+G     +C+ GR +EA  +L  M  +G VP AV Y T+I   C++G +  A 
Sbjct: 155 VPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAA 214

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           +  +EM+  G     +T++ ++  +    ++ EA  ++  M  KG +P  +TY  L+ G 
Sbjct: 215 TLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGL 274

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           CR   A +A +    M+ +  +  ++ + ++I     + ++ EA +L+E    KG  PD 
Sbjct: 275 CRVRQADEARA----MLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDA 330

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
             ++ L+ G C  G I  A  LL+EM++    P+ VTY  ++H  C+ G  ++ R LL++
Sbjct: 331 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 390

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           M  +G     ++ N     YN +I  LCK+   D A  L++EM S+G  PD  +Y ++I
Sbjct: 391 MSAKG-----LTLNSQ--GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 442



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 162/364 (44%), Gaps = 59/364 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+  Y + +  +C +G + EA+ +L +M   G      T++ ++ G C  G 
Sbjct: 185 MARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGR 244

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL------------------------------ 90
           +  A    D M+ +G MP   TY  L+  L                              
Sbjct: 245 VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGG 304

Query: 91  -LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149
            L E K+ EA ++ + MG KG  PD+ TY+IL++G C+ G    A  L  EM  KG  P 
Sbjct: 305 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPN 364

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           ++TYT ++    K     +   L E   AKG+  +   +N +I   C +G ++ A  L++
Sbjct: 365 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 424

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN---------- 259
           EM     +PD  +YNT+++  C   ++EEA  + + +   G+  + I++N          
Sbjct: 425 EMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 484

Query: 260 ----PTRL--------------TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
                 RL              +YN LI+ +CK+   D +  LL EM  KGI P++ +Y 
Sbjct: 485 RWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYN 544

Query: 302 SLIE 305
            LI 
Sbjct: 545 ILIS 548



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 100/174 (57%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV  +  TY + +  + ++GR ++A R+ ++M  +G     V+YN LI   C  GN++ +
Sbjct: 465 GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRS 524

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +EM ++GI P   +YN+LI EL  ER++ +A ++ K+M  +G+ PD +TYN LING
Sbjct: 525 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 584

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            C+ G    A +L +++ ++ + P ++TY  LI    K   + +A  L    +A
Sbjct: 585 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMA 638



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 126/282 (44%), Gaps = 41/282 (14%)

Query: 57  NKGNLEMA--FSFRDEMV-KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           ++G L  A  F+    MV +  + PT  T+ +    L    +  EA  +L+ M   G VP
Sbjct: 133 SQGGLPRARRFALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVP 192

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D++ Y  +I+  C  G   +A +L +EM+  G    + T+  ++  +    R+ EA +L 
Sbjct: 193 DAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLV 252

Query: 174 ENFLAKGMLP-------------------------------DIVMFNALIDGHCTNGNIE 202
           +  + KG +P                               ++V+FN +I G    G + 
Sbjct: 253 DRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLA 312

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A  L + M      PD  TY+ LMHG C+ G++  A RLL +M+++G       F P  
Sbjct: 313 EATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKG-------FAPNV 365

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +TY  ++   CKN   D    LL EM +KG+T +   Y  +I
Sbjct: 366 VTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 407


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 156/291 (53%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  +   + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+ +  EM +KG+VP+ +T+  LI G
Sbjct: 191 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+      A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KPD         TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPD-------TGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 414



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 165/309 (53%), Gaps = 8/309 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       +E+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E++  G   +   +N+L+H    E  +  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY R G+  + F L   M   G+QP + TY+ LI  L K+++M +A+ LF+  L K
Sbjct: 176 TLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDK 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LI GHC N  ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 HDLIDEMSMKGLKPD-------KITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVA 348

Query: 300 YFSLIEGIA 308
           Y +LI G+ 
Sbjct: 349 YTALISGLC 357



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 127/213 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GVQPD YTY   ++G+CKE ++++A+ + ++M + GLVP  VT+ TLI G+C    
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213
           + PD   +  +I+  C  G++     LLKEM R
Sbjct: 377 LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 409



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 139/253 (54%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P   ++ + ++G  + G L+E  R+   M  +G+ P   TY+ LI+G C +  ++ A
Sbjct: 166 GLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDA 225

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEM+ +G++P   T+  LI      R++  A ++ K+M  + + PD ITYN LI G
Sbjct: 226 NGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G+ K+A  L DEM  KG++P  +TYT+LI    K+  +  A +  +  + + +  D
Sbjct: 286 LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 345

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V + ALI G C  G    A  +L+EM  + + PD  TY  +++  C++G V    +LL 
Sbjct: 346 DVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 245 QMKRRGIKPDHIS 257
           +M+R G  P  +S
Sbjct: 406 EMQRDGHVPSVVS 418



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 90/152 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S+ + PD  TY + + G+CK+G L++A  ++++M   GL P  +TY TLIDG C +G+
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGD 326

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE AF  R  M+++ I      Y  LI  L  E + ++A+ +L+EM   G+ PD+ TY +
Sbjct: 327 LETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTM 386

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +IN +C+ G+      L  EM   G  P++++
Sbjct: 387 IINEFCKKGDVWTGSKLLKEMQRDGHVPSVVS 418


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 160/283 (56%), Gaps = 9/283 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNK 58
           M   G  P  ++Y   + G+C E R +EA  +L  M ++G    P  V+Y+T+IDG   +
Sbjct: 160 MTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKE 219

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G+ + A+S   EM+++GI+P   TYN ++  L   + M +A D+L  M + G++PD ITY
Sbjct: 220 GDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITY 279

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N +++GYC  G +K+A  + ++M   G++P  +TYTSL+  L K  R IEA ++ ++ + 
Sbjct: 280 NSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIK 339

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G+ P+++ ++ L+ G+ T G +     LL  M R  + PD   ++ L+    +   V+ 
Sbjct: 340 RGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDV 399

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
           A  +  +M+++ + PD +       TY  LI GLCK+   D A
Sbjct: 400 AMFVFSKMRQQRLTPDVV-------TYGTLIDGLCKSGRVDDA 435



 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 170/335 (50%), Gaps = 31/335 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
            V P  +TYG  +   C+ GRL+     L  + + G     + +  L+   C +     A
Sbjct: 93  AVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNA 152

Query: 65  FSF-RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNIL 121
            +     M + G  P   +YN+L+  L  E +  EA ++L  M + G    PD ++Y+ +
Sbjct: 153 MNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTI 212

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G  + G++ KA+S + EM+ +GI P ++TY +++  L K   M +A  +    +  G+
Sbjct: 213 IDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGV 272

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +PD + +N+++ G+C++G  + A  +L++M    V PD VTY +LM   C+ G+  EAR+
Sbjct: 273 MPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARK 332

Query: 242 LLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLC 273
           +LD M +RG+KP+ I+++                            P R  ++ LI    
Sbjct: 333 ILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACT 392

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           K+Q  D+A  +  +M  + +TPD  TY +LI+G+ 
Sbjct: 393 KHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLC 427



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 147/280 (52%), Gaps = 10/280 (3%)

Query: 33  LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
           + +  +  + PT  TY  LI   C  G L++ F+    ++K+G       +  L+  L  
Sbjct: 86  MARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCA 145

Query: 93  ERKMVEA-DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG--IQPT 149
           E++   A + +L+ M E G  P   +YNIL+ G C    +++A  L   M   G    P 
Sbjct: 146 EKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPD 205

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           +++Y+++I  L K+    +A   +   L +G+LPD+V +N ++   C    +++A  +L 
Sbjct: 206 VVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLN 265

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
            M +  V PD +TYN+++HG C  G+ +EA  +L++M   G++PD +       TY +L+
Sbjct: 266 RMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAV-------TYTSLM 318

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
             LCKN     A ++L  M+ +G+ P+  TY +L+ G A+
Sbjct: 319 DYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYAT 358



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 10/212 (4%)

Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
           +  + P   TY ILI   CR G     F+    +I KG +   + +T L+  L  + R  
Sbjct: 91  DGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTS 150

Query: 168 EA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYN 224
            A + +       G  P +  +N L+ G C     + A  LL  M  D     PD V+Y+
Sbjct: 151 NAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYS 210

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
           T++ G  ++G  ++A     +M  RGI PD +       TYN ++  LCK Q  D A ++
Sbjct: 211 TIIDGLFKEGDSDKAYSTYHEMLERGILPDVV-------TYNTIVAALCKAQAMDKAMDV 263

Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           L  MV  G+ PD  TY S++ G  S  ++ E+
Sbjct: 264 LNRMVKNGVMPDCITYNSIVHGYCSSGQSKEA 295


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 5/310 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           MK  GV P   T+ S +S + K GR   A ++ ++M +  G+ P   T+N LI G+C   
Sbjct: 191 MKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNS 250

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSIT 117
            ++  F F  EM +    P   TYN L+  L    K+  A +++K M +K   + P+ +T
Sbjct: 251 MVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVT 310

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI GYC   +  +A SL  EM+ +G++P  +TY +LI  L +  ++ +  ++ E  +
Sbjct: 311 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMV 370

Query: 178 AKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             G  +PD    N LI  HCT G +E AFS+ ++M  ++V PD  TY+ L+   C++G  
Sbjct: 371 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 430

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             A    D++  + I    +   P    YN + + LC N +   AE + R+++ +G T D
Sbjct: 431 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQD 489

Query: 297 DNTYFSLIEG 306
             +Y +LI G
Sbjct: 490 PPSYKTLILG 499



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 162/357 (45%), Gaps = 55/357 (15%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           PD  TY + V G+C+ G+++ A  +++ M  K   L P  VTY TLI GYC K ++  A 
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILING 124
           S   EMV +G+ P   TYN LI  L   +K+ +  ++L+ M G+ G +PD+ T N LI  
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKA 388

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-- 182
           +C  G  ++AFS+ ++M    +QP   TY+ L+  L ++     A++ F+    K +L  
Sbjct: 389 HCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLH 448

Query: 183 -----PDIVMFN----------------------------------ALIDGHCTNGNIER 203
                P +  +N                                   LI GHC  G  E 
Sbjct: 449 DVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEA 508

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
            F LL  M R    PD  TY  ++ G  ++G    A + L++M    +K  H+   PT  
Sbjct: 509 GFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKM----LKSSHL---PTTA 561

Query: 264 TYNALIQGL----CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +++++  L    C ++   L + +L   + + I    +T   L+  +    K  E+
Sbjct: 562 IFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEA 618



 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 109/196 (55%), Gaps = 6/196 (3%)

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N LI  Y   G  +++  +   M   G+ P+++T+ SL+ ++ K+ R   A QLF+  L
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 178 -AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
              G+ PD   FN LI G C N  ++  F   KEM R K  PD VTYNTL+ G CR GKV
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + A  ++  M ++   P+    +P  +TY  LI+G C  Q+   A  LL EMVS+G+ P+
Sbjct: 288 KIAHNVVKGMVKKS--PN---LSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPN 342

Query: 297 DNTYFSLIEGIASVDK 312
             TY +LI+G+    K
Sbjct: 343 KITYNTLIQGLCEAQK 358



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 149/341 (43%), Gaps = 57/341 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
           M SRG++P+  TY + + G+C+  +L++   +LE M  + G +P   T NTLI  +C  G
Sbjct: 334 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 393

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV------- 112
            LE AFS  ++M +  + P ++TY++L+  L        A++   E+ EK I+       
Sbjct: 394 KLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCK 453

Query: 113 ----------------------------------PDSITYNILINGYCRCGNAKKAFSLH 138
                                              D  +Y  LI G+CR G  +  F L 
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLL 513

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198
             M+ +   P   TY  +I  L K+   + A +  E  L    LP   +F++++      
Sbjct: 514 VLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 573

Query: 199 GNIERAFSLLKEM--DRMKVHPDEVTYNT--LMHGRCRQGKVEEARRLL--DQMKRRGIK 252
           G    + SL+K M   R++ + D  T+    L+   C+  K+ EA+++L     KR+ + 
Sbjct: 574 GCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVD 633

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            D  S          +I GLCK  +   A  L  E+V KG+
Sbjct: 634 IDMCS---------TVISGLCKAHKVSEAFALYYELVEKGM 665



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 10/189 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   PD+ TYG  + G+ K+G    A + LE+M ++  +PT   +++++     KG 
Sbjct: 516 MLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGC 575

Query: 61  LEMAFSFRDEM----VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
              + S    M    ++Q I  +  T   L+  L   RK++EA  ML    EK    D  
Sbjct: 576 AHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDID 635

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
             + +I+G C+     +AF+L+ E++ KG+Q  +     L   L  + R+ EA      F
Sbjct: 636 MCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEA-----KF 690

Query: 177 LAKGMLPDI 185
           ++K M P++
Sbjct: 691 VSKKM-PEV 698



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN+LI  +   G  + +  + K M  + V P  VT+N+L+    ++G+   A++L D+M
Sbjct: 167 FFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEM 226

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
                  D     P   T+N LI+G C N   D      +EM      PD  TY +L++G
Sbjct: 227 L------DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDG 280

Query: 307 IASVDKAAESSN 318
           +    K   + N
Sbjct: 281 LCRAGKVKIAHN 292


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 165/332 (49%), Gaps = 32/332 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P++ TY   + G  K+G  E A  M +QM   G+VPT  T+N++I+G C  G +  A
Sbjct: 496 GLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEA 555

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               +  +KQ  +PT+ TYN +I   + E  +  A+ + +EM    I P+ ITY  LING
Sbjct: 556 RDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLING 615

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+      A  +HD+M  KG++  +  Y +LI    K   M  A + F   L  G+ P+
Sbjct: 616 FCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPN 675

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            +++N +I  +    N+E A +L KEM   K+  D   Y +L+ G  ++GK+  A  L  
Sbjct: 676 TIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYS 735

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
           +M  RGI PD   +N                            PT L YN LI G  K  
Sbjct: 736 EMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFK-- 793

Query: 277 EGDLAE--ELLREMVSKGITPDDNTYFSLIEG 306
           EG+L E   L  EM+ KG+ PDD TY  L+ G
Sbjct: 794 EGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825



 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 160/306 (52%), Gaps = 42/306 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P  YT+ S ++G+CK GR+ EA   L    +   +PT++TYN +IDGY  +G 
Sbjct: 527 MVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGA 586

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL--------------MERKMVEAD------ 100
           ++ A S   EM +  I P   TY  LI+                 M+RK +E D      
Sbjct: 587 IDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYAT 646

Query: 101 ---------DM------LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                    DM        ++ E G+ P++I YNI+I+ Y    N + A +LH EMI+  
Sbjct: 647 LIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNK 706

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I   +  YTSLI  L K+ ++  A  L+   L +G++PDI M+N LI+G C +G +E A 
Sbjct: 707 IPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAG 766

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +LKEMD   + P  + YNTL+ G  ++G ++EA RL D+M  +G+ PD         TY
Sbjct: 767 KILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDT-------TY 819

Query: 266 NALIQG 271
           + L+ G
Sbjct: 820 DILVNG 825



 Score =  173 bits (439), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 169/306 (55%), Gaps = 8/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+QP  +     + G  K+  LE A  +L+   ENG + + VTYN ++   C  G 
Sbjct: 388 MKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENG-IASVVTYNIVLLWLCELGK 446

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D+M+ +GI P+  +YN +I     +  M +A +++  + E G+ P++ITY I
Sbjct: 447 VNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTI 506

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G  + G+ + AF++ D+M+  GI PT  T+ S+I  L K  R+ EA      F+ + 
Sbjct: 507 LMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQS 566

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P  + +N +IDG+   G I+ A S+ +EM R ++ P+ +TY +L++G C+  K++ A 
Sbjct: 567 FIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLAL 626

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D MKR+G++ D          Y  LI G CK Q+ + A +   +++  G+TP+   Y
Sbjct: 627 KMHDDMKRKGLELDIT-------VYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVY 679

Query: 301 FSLIEG 306
             +I  
Sbjct: 680 NIMISA 685



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           + P+  TY S ++G CK  +++ A +M + MK  GL      Y TLI G+C   ++E A 
Sbjct: 602 ISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENAC 661

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
            F  ++++ G+ P    YN++I        M  A ++ KEM    I  D   Y  LI+G 
Sbjct: 662 KFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGL 721

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
            + G    A  L+ EM+ +GI P +  Y  LI  L    ++  A ++ +      + P +
Sbjct: 722 LKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTV 781

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           +++N LI GH   GN++ AF L  EM    + PD+ TY+ L++G+
Sbjct: 782 LLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGK 826



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 158/386 (40%), Gaps = 74/386 (19%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P        ++ M +   +E+A R+ ++M E  +     T   L+      G 
Sbjct: 178 MLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGK 237

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIH------ELLMERKMVEADDMLKEMGEKGIVPD 114
              A  +  +   +G+   A++Y+++I       +L +  K+VE D+      E G VP 
Sbjct: 238 FVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDE------ELGWVPS 291

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             TY  +I    R GN  +A  L DEM+   +   +   TSLI     +  +  A +LF+
Sbjct: 292 EGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFD 351

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP---------------- 218
             +  G+ P++ +F+ LI+     GN+E+A  L   M  M + P                
Sbjct: 352 EVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQN 411

Query: 219 ------------------DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN- 259
                               VTYN ++   C  GKV EA  L D+M  +GI P  +S+N 
Sbjct: 412 LLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNH 471

Query: 260 ---------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
                                      P  +TY  L++G  K  + + A  +  +MV+ G
Sbjct: 472 MILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAG 531

Query: 293 ITPDDNTYFSLIEGIASVDKAAESSN 318
           I P D T+ S+I G+  V + +E+ +
Sbjct: 532 IVPTDYTFNSIINGLCKVGRVSEARD 557



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 139/325 (42%), Gaps = 27/325 (8%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           DS  +   +    +  ++ EA      M E+G+VP     N L+     +  +E A    
Sbjct: 151 DSRVFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLF 210

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           DEM ++ I     T  +L+   L   K VEA+    +   +G+  D+ +Y+I+I   CR 
Sbjct: 211 DEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRG 270

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            +   A  L +     G  P+  TY ++I    +     EA +L +  +   +  ++ + 
Sbjct: 271 SDLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVA 330

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            +LI G+C  G++  A  L  E+  + V P+   ++ L+    + G VE+A  L  +MK 
Sbjct: 331 TSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKC 390

Query: 249 RGIKPDHISFN---------------------------PTRLTYNALIQGLCKNQEGDLA 281
            G++P     N                            + +TYN ++  LC+  + + A
Sbjct: 391 MGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEA 450

Query: 282 EELLREMVSKGITPDDNTYFSLIEG 306
             L  +M+ KGITP   +Y  +I G
Sbjct: 451 CNLWDKMIGKGITPSLVSYNHMILG 475


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 179/345 (51%), Gaps = 32/345 (9%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD+ TY + +  M K+GRL +   +L  MK+NGLVP  VTYN L+ GYC  G+L+ AF
Sbjct: 236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAF 295

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              + M +  ++P   TYN+LI+ L     M E  +++  M    + PD +TYN LI+G 
Sbjct: 296 QIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC 355

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYT-SLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
              G + +A  L ++M + G++   +T+  SL ++  ++ R     ++ E     G  PD
Sbjct: 356 FELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPD 415

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV ++ LI  +   G++  A  +++EM +  +  + +T NT++   C++ K++EA  LL+
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLN 475

Query: 245 QMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQ 276
              +RG   D +++                             PT  T+N+LI GLC + 
Sbjct: 476 SAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHG 535

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAESSN 318
           + +LA E   E+   G+ PDD+T+ S+I G      V+KA E  N
Sbjct: 536 KTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYN 580



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 165/318 (51%), Gaps = 11/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M++ GV+ +  T+   +  +CKE + E  +R ++++ + +G  P  VTY+TLI  Y   G
Sbjct: 371 MENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVG 430

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           +L  A     EM ++GI     T N ++  L  ERK+ EA ++L    ++G + D +TY 
Sbjct: 431 DLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYG 490

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI G+ R    +KA  + DEM    I PT+ T+ SLI  L    +   A + F+     
Sbjct: 491 TLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAES 550

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+LPD   FN++I G+C  G +E+AF    E  +    PD  T N L++G C++G  E+A
Sbjct: 551 GLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKA 610

Query: 240 RRLLDQM-KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
               + + + R +           +TYN +I   CK+++   A +LL EM  KG+ PD  
Sbjct: 611 LNFFNTLIEEREVD---------TVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRF 661

Query: 299 TYFSLIEGIASVDKAAES 316
           TY S I  +    K +E+
Sbjct: 662 TYNSFISLLMEDGKLSET 679



 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 155/343 (45%), Gaps = 43/343 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+ P+  TY + V G CK G L+EA +++E MK+  ++P   TYN LI+G CN G+
Sbjct: 266 MKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGS 325

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL--------------MERKMVEADDMLKEM 106
           +       D M    + P   TYN LI                  ME   V+A+ +   +
Sbjct: 326 MREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNI 385

Query: 107 GEK----------------------GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
             K                      G  PD +TY+ LI  Y + G+   A  +  EM  K
Sbjct: 386 SLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQK 445

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           GI+   +T  +++  L K+ ++ EA  L  +   +G + D V +  LI G      +E+A
Sbjct: 446 GIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKA 505

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             +  EM ++K+ P   T+N+L+ G C  GK E A    D++   G+ PD         T
Sbjct: 506 LEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDS-------T 558

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +N++I G CK    + A E   E +     PD+ T   L+ G+
Sbjct: 559 FNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGL 601



 Score =  144 bits (362), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 158/308 (51%), Gaps = 12/308 (3%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDG---YCNKGNLEMA 64
           P    +   +S    EG+   A ++ ++M    L P  +T NTL+ G   Y +  ++  A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILIN 123
               D+MVK G+     T+N+L++   +E K+ +A  ML+ M  E  + PD++TYN ++ 
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILK 248

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
              + G       L  +M   G+ P  +TY +L++   K   + EA Q+ E      +LP
Sbjct: 249 AMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLP 308

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+  +N LI+G C  G++     L+  M  +K+ PD VTYNTL+ G    G   EAR+L+
Sbjct: 309 DLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLM 368

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS-KGITPDDNTYFS 302
           +QM+  G+K + +       T+N  ++ LCK ++ +     ++E+V   G +PD  TY +
Sbjct: 369 EQMENDGVKANQV-------THNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHT 421

Query: 303 LIEGIASV 310
           LI+    V
Sbjct: 422 LIKAYLKV 429



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 1/246 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++ ++ T  + +  +CKE +L+EA  +L    + G +   VTY TLI G+  +  
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEK 501

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM K  I PT ST+N LI  L    K   A +   E+ E G++PD  T+N 
Sbjct: 502 VEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNS 561

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G  +KAF  ++E I    +P   T   L+  L K+  M E    F N L + 
Sbjct: 562 IILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG-MTEKALNFFNTLIEE 620

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D V +N +I   C +  ++ A+ LL EM+   + PD  TYN+ +      GK+ E  
Sbjct: 621 REVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETD 680

Query: 241 RLLDQM 246
            LL + 
Sbjct: 681 ELLKKF 686



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 100/179 (55%), Gaps = 1/179 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   + P   T+ S + G+C  G+ E A    +++ E+GL+P   T+N++I GYC +G 
Sbjct: 512 MKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGR 571

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF F +E +K    P   T N+L++ L  E    +A +    + E+  V D++TYN 
Sbjct: 572 VEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV-DTVTYNT 630

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +I+ +C+    K+A+ L  EM  KG++P   TY S I +L +  ++ E D+L + F  K
Sbjct: 631 MISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGK 689



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 98/203 (48%), Gaps = 15/203 (7%)

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQ----PTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           L+  Y R  +A  + SL + ++H  +     P+   +   +     + +   A Q+F+  
Sbjct: 100 LLVSYIRTSDA--SLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQKM 157

Query: 177 LAKGMLPDIVMFNALIDG---HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           +   + P+++  N L+ G   + ++ +I  A  +  +M ++ V  +  T+N L++G C +
Sbjct: 158 IRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLE 217

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
           GK+E+A  +L++M            NP  +TYN +++ + K       +ELL +M   G+
Sbjct: 218 GKLEDALGMLERM------VSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGL 271

Query: 294 TPDDNTYFSLIEGIASVDKAAES 316
            P+  TY +L+ G   +    E+
Sbjct: 272 VPNRVTYNNLVYGYCKLGSLKEA 294


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 168/330 (50%), Gaps = 30/330 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GVQP+SYTY   V G+CKEG+  +  ++ + +K   + P  VTY +L+  YC++GN
Sbjct: 347 MAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGN 406

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM ++G  P + TYN+L+  L    ++ EA+ +L+ M EKG   D+ + NI
Sbjct: 407 AAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNI 466

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-----------------------IQPTMLTYTSLI 157
           +I+G CR      A  + D M ++G                         P  +TY++L+
Sbjct: 467 IIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLV 526

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
             L K+ R  EA +     + K + PD V+++  I G+C +G    A  +L++M++    
Sbjct: 527 SALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCK 586

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
           P   TYN L+ G   +   +E  +L+ +MK +GI P+        +TYN+LI+  C+   
Sbjct: 587 PSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPN-------VMTYNSLIKSFCERGM 639

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            + A  LL EM+   I P+  ++  LI+  
Sbjct: 640 VNKAMPLLDEMLQNEIVPNITSFELLIKAF 669



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 156/328 (47%), Gaps = 31/328 (9%)

Query: 4   RGV-QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           RG+ +PD  T+   +SG C+ G ++EA  +++ M+  G +    +YN  + G    G + 
Sbjct: 279 RGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVG 338

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM  +G+ P + TYN+++  L  E K  +   +   +    + PD +TY  L+
Sbjct: 339 EAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLL 398

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           + YC  GNA  A  + DEM  KG  P   TY  L+  L K  R+ EA++L E    KG  
Sbjct: 399 HAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYS 458

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEM-----------------------DRMKVHPD 219
            D    N +IDG C N  ++ A  ++  M                          +  PD
Sbjct: 459 LDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPD 518

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            +TY+TL+   C++G+ +EA++ L +M  + I PD +        Y+  I G CK+ +  
Sbjct: 519 RITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSV-------LYDTFIHGYCKHGKTS 571

Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGI 307
           LA ++LR+M  KG  P   TY  LI G 
Sbjct: 572 LAVKVLRDMEKKGCKPSTRTYNLLIWGF 599



 Score =  153 bits (387), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 161/362 (44%), Gaps = 50/362 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+S+TY   +  + K GR+ EA R+LE+M E G      + N +IDG C    
Sbjct: 417 MAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCRNNK 476

Query: 61  LEMAFSFRDEMVKQG-----------------------IMPTASTYNLLIHELLMERKMV 97
           L+MA    D M  +G                        +P   TY+ L+  L  E +  
Sbjct: 477 LDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEGRFD 536

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157
           EA   L EM  K I PDS+ Y+  I+GYC+ G    A  +  +M  KG +P+  TY  LI
Sbjct: 537 EAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLI 596

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
           +   +++   E  +L      KG+ P+++ +N+LI   C  G + +A  LL EM + ++ 
Sbjct: 597 WGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLDEMLQNEIV 656

Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLD------------------QMKRRGIKPDHISFN 259
           P+  ++  L+   C+      A+R+ D                  Q+   G   + ++  
Sbjct: 657 PNITSFELLIKAFCKTSDFSAAQRVFDASLSTCGQKEVLYSLMCTQLSTYGRWLEAMNIL 716

Query: 260 PT---------RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
            T         R  Y  +I+GLCK  E D    LL+ ++ KG + D   +  +I+ ++  
Sbjct: 717 ETVLELRISIHRFPYKQIIEGLCKVDEVDHGHRLLKLLMVKGYSFDPAAFMPVIDALSER 776

Query: 311 DK 312
            K
Sbjct: 777 GK 778



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 163/348 (46%), Gaps = 57/348 (16%)

Query: 15  SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM--- 71
           + V+G C+EG+++EA R++E+M++ GL P  VT+N  I   C  G +  A+   ++M   
Sbjct: 217 TVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEK 276

Query: 72  VKQGI-MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
            ++G+  P   T+++++        + EA  ++  M   G +    +YN  ++G  R G 
Sbjct: 277 WERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGM 336

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-MLPDIVMFN 189
             +A  L  EM H+G+QP   TY  ++  L K+ +  +  ++ E+F+  G M PD+V + 
Sbjct: 337 VGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKV-EDFVKSGVMTPDVVTYT 395

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
           +L+  +C+ GN   A  +L EM +    P+  TYN L+    + G++ EA RLL++M  +
Sbjct: 396 SLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEK 455

Query: 250 GIKPDHISFN-------------------------------------------------- 259
           G   D  S N                                                  
Sbjct: 456 GYSLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRC 515

Query: 260 -PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            P R+TY+ L+  LCK    D A++ L EM+ K I+PD   Y + I G
Sbjct: 516 LPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHG 563



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 145/316 (45%), Gaps = 19/316 (6%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD +T    +  +C  GR+E A R+ + M E        ++  L  GYC  G    A
Sbjct: 145 GAAPDVFTRNILLQALCAAGRMELARRVFDAMPER----NEFSFGILARGYCRAGRSMDA 200

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D M    ++      N ++     E ++ EA+ +++ M ++G+ P+ +T+N  I+ 
Sbjct: 201 LGVLDSMPTMNLV----VCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARISA 256

Query: 125 YCRCGNAKKAFSLHDEMIHK---GI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            C+ G    A+ + ++M  K   G+ +P  +T+  ++    +   + EA  L +     G
Sbjct: 257 LCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGG 316

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            L  +  +N  + G   NG +  A  LL+EM    V P+  TYN ++ G C++GK  + R
Sbjct: 317 FLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVR 376

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++ D +K   + PD +       TY +L+   C       A  +L EM  KG  P+  TY
Sbjct: 377 KVEDFVKSGVMTPDVV-------TYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTY 429

Query: 301 FSLIEGIASVDKAAES 316
             L++ +    +  E+
Sbjct: 430 NVLLQSLWKAGRITEA 445



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 133/273 (48%), Gaps = 23/273 (8%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            YN L+     +   ++  S   +++  G  P   T N+L+  L    +M  A  +   M
Sbjct: 117 VYNRLLLAALQEARFDLVESLYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAM 176

Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM--LTYTSLIFVLSKQN 164
            E+    +  ++ IL  GYCR G +  A  + D M      PTM  +   +++    ++ 
Sbjct: 177 PER----NEFSFGILARGYCRAGRSMDALGVLDSM------PTMNLVVCNTVVAGFCREG 226

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM----DRMKVHPDE 220
           ++ EA++L E    +G+ P++V FNA I   C  G +  A+ +  +M    +R    PD+
Sbjct: 227 QVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQ 286

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           VT++ ++ G C  G V+EAR L+D M+  G       F     +YN  + GL +N     
Sbjct: 287 VTFDVMLSGFCEAGMVDEARVLVDIMRCGG-------FLRRVESYNRWLSGLVRNGMVGE 339

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           A+ELLREM  +G+ P+  TY  +++G+    KA
Sbjct: 340 AQELLREMAHEGVQPNSYTYNIIVDGLCKEGKA 372


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 168/348 (48%), Gaps = 32/348 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK-ENGLVPTAVTYNTLIDGYCNKG 59
           MKS    P   TY   ++  C  G   +A  + + MK E  + P   TYNTLI G C+ G
Sbjct: 36  MKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSG 95

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N E A     EM  + I     TY+ +I  L+ E K  E+  +L+EM   G  PD   +N
Sbjct: 96  NTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFN 155

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL-- 177
            ++ G+ R  N +KA  ++  M+  G +P  ++Y  LI  L+K  ++ E+ ++       
Sbjct: 156 GVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMR 215

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           A G +P+++ F+ LI G C  G +E+A  +   M      P++ TY TL+ G CR  KV 
Sbjct: 216 AAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVI 275

Query: 238 EARRLLDQMKRRGIKPDHISFN-----------------------------PTRLTYNAL 268
           +AR L ++M +  I PD +++N                             PT +T+N L
Sbjct: 276 QARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTL 335

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           I G CK  +   A EL+ EM +KG+  D  TY  LI G++   K  E+
Sbjct: 336 IDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEA 383



 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 170/319 (53%), Gaps = 13/319 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + +  + +TY S +  + KE + EE+ ++LE+M   G  P    +N ++ G+    N
Sbjct: 107 MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 166

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK--GIVPDSITY 118
           +E A      MV+ G  P   +Y++LIH L    K+ E+  +L EM  +  G VP+ IT+
Sbjct: 167 MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITF 226

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           + LI+G CR G  +KA  +   M+  G +P   TYT+LI  L +  ++I+A +LFE    
Sbjct: 227 STLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQ 286

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD-RMKVHPDEVTYNTLMHGRCRQGKVE 237
             + PD V +N+LI G+C  G+++ A  L +EM     + P  VT+NTL+ G C+ GK+ 
Sbjct: 287 ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLG 346

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  L+ +M  +G+  D         TY  LI GL +  + D A E+ ++M  K    D 
Sbjct: 347 RANELVAEMGTKGLAADTC-------TYRILIAGLSRATKLDEALEVYKQMREKKFLLDP 399

Query: 298 NTYFSLIEGI---ASVDKA 313
            +  S + G+    ++D+A
Sbjct: 400 VSCVSFVGGLCKTGNIDQA 418



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 154/297 (51%), Gaps = 10/297 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNK 58
           M   G +PD+ +Y   + G+ K G+L+E+ ++L +M  +  G VP  +T++TLI G C  
Sbjct: 177 MVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRT 236

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G LE A      M++ G  P   TY  LI  L    K+++A ++ ++M +  I PD++ Y
Sbjct: 237 GELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAY 296

Query: 119 NILINGYCRCGNAKKAFSLHDEMIH-KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           N LI GYC+ G+  +A  L+ EM    G+QPT++T+ +LI    K  ++  A++L     
Sbjct: 297 NSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMG 356

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+  D   +  LI G      ++ A  + K+M   K   D V+  + + G C+ G ++
Sbjct: 357 TKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNID 416

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           +A  + +  ++ G  P     NP   T+  L + L K    + A++L+    ++ IT
Sbjct: 417 QAYAVFEATRKSGAVP-----NPE--TFRILSESLIKLGRVEDAQKLMEPAKARDIT 466



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 141/271 (52%), Gaps = 6/271 (2%)

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
            Y+ ++      G L  A    + M  +  +P+  TYN+LI+      +  +A D+ + M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 107 G-EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
             EK + PD  TYN LI+G C  GN + A  L  EM  K I   + TY+S+I  L K+ +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
             E+ ++ E  +A G  PD+  FN ++ G   + N+E+A  + + M      PD V+Y+ 
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+HG  + GK++E+ ++L +M  R        + P  +T++ LI GLC+  E + A E+ 
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRA-----AGYVPNVITFSTLIHGLCRTGELEKALEVF 246

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             M+  G  P+  TY +LI G+   +K  ++
Sbjct: 247 GSMLEAGCKPNKYTYTTLIAGLCRAEKVIQA 277


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/311 (32%), Positives = 167/311 (53%), Gaps = 9/311 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           Q D+ TYG  + G+C+ G ++ A+R+   M + GLV     YN+LI G+C  G    A+ 
Sbjct: 296 QADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWK 355

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILINGY 125
           F D     GI    +TYN++   LL    + EA ++LK++  +    PD +T+  LI+G 
Sbjct: 356 FWDSTGFSGIRQI-TTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGL 414

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C  G A +AF + ++  + G +  + +Y+S+I    K  R  +A+++++N +  G  P+ 
Sbjct: 415 CENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNS 474

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
            ++NALI+G C    I  A  +  EM      P  +TYNTL+ G C+  K +EA  L  +
Sbjct: 475 HVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKE 534

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  RG KPD         TY +LI+GLC++++ D+A  +  E++  G+  D   +  LI 
Sbjct: 535 MLERGFKPDI-------RTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIH 587

Query: 306 GIASVDKAAES 316
           G+ S  K  E+
Sbjct: 588 GLCSAGKVDEA 598



 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD  T+G+ + G+C+ G    A  +LE  + +G      +Y+++I+ +C  G    A  
Sbjct: 401 SPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANE 460

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
               MVK G  P +  YN LI+      K+ +A  +  EM   G  P  ITYN LI+G C
Sbjct: 461 VYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLC 520

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +    ++A SL  EM+ +G +P + TY SLI  L +  ++  A ++++  L  G+  D++
Sbjct: 521 KAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVM 580

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           + N LI G C+ G ++ AF +  EM      P+ VTYNTLM G    G +++A  L   +
Sbjct: 581 VHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAI 640

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G+KPD +       TYN  I+GLC          LL E+++ GI P   T+  L+  
Sbjct: 641 LDNGLKPDIV-------TYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRA 693

Query: 307 I 307
           +
Sbjct: 694 V 694



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 167/371 (45%), Gaps = 64/371 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ RGV PD  TY + +SG+ K  +L+ A  +L++M   G+   AV YN L+ G    G 
Sbjct: 184 LRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGM 243

Query: 61  LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            E A    +++V+  G  P  +TY +++  L    +  EA ++   M       D++TY 
Sbjct: 244 FEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYG 303

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE----- 174
           ILI+G CR G+   A  ++ +M+  G+   +  Y SLI    +  R  EA + ++     
Sbjct: 304 ILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFS 363

Query: 175 --------NFLAKGML----------------------PDIVMFNALIDGHCTNGNIERA 204
                   N + KG+L                      PD V F  LI G C NG   RA
Sbjct: 364 GIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRA 423

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----- 259
           F +L++        D  +Y+++++  C+ G+  +A  +   M + G KP+   +N     
Sbjct: 424 FEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALING 483

Query: 260 -----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                  PT +TYN LI GLCK ++   A  L +EM+ +G  PD
Sbjct: 484 FCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPD 543

Query: 297 DNTYFSLIEGI 307
             TY SLI G+
Sbjct: 544 IRTYASLIRGL 554



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 8/305 (2%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           TY     G+   G + EA+ +L+Q++ +    P  VT+ TLI G C  G    AF   ++
Sbjct: 370 TYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILED 429

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
               G      +Y+ +I+    + +  +A+++ K M + G  P+S  YN LING+CR   
Sbjct: 430 ARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSK 489

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
              A  ++ EM   G  PT++TY +LI  L K  +  EA  L +  L +G  PDI  + +
Sbjct: 490 INDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYAS 549

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           LI G C +  ++ A  +  E+    +  D + +N L+HG C  GKV+EA  +  +MK + 
Sbjct: 550 LIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKN 609

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
             P+ +       TYN L+ G  +    D A  L   ++  G+ PD  TY + I+G+ S 
Sbjct: 610 CSPNLV-------TYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSC 662

Query: 311 DKAAE 315
           ++  E
Sbjct: 663 NRTPE 667



 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 139/273 (50%), Gaps = 7/273 (2%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           ++ G + D ++Y S ++  CK+GR  +A+ + + M ++G  P +  YN LI+G+C    +
Sbjct: 431 RNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKI 490

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
             A     EM   G  PT  TYN LI  L    K  EA  + KEM E+G  PD  TY  L
Sbjct: 491 NDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASL 550

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I G CR      A  + DE++  G+Q  ++ +  LI  L    ++ EA  ++     K  
Sbjct: 551 IRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNC 610

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            P++V +N L+DG    G+I++A SL   +    + PD VTYNT + G C   +  E   
Sbjct: 611 SPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVL 670

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
           LL+++   GI        PT +T++ L++ + K
Sbjct: 671 LLNEVLATGIM-------PTVITWSILVRAVIK 696



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 124/237 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+S+ Y + ++G C+  ++ +A ++  +M  NG  PT +TYNTLIDG C    
Sbjct: 465 MVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEK 524

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S   EM+++G  P   TY  LI  L  ++K+  A  +  E+ + G+  D + +NI
Sbjct: 525 YQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNI 584

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G   +AF ++ EM  K   P ++TY +L+    +   + +A  L+   L  G
Sbjct: 585 LIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNG 644

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
           + PDIV +N  I G C+         LL E+    + P  +T++ L+    + G ++
Sbjct: 645 LKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQ 701



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 147/309 (47%), Gaps = 14/309 (4%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG----LVPTAVTYNTLIDGYCNKGN 60
           G  P   ++ + +    +  R  +A      +        + P   TYN ++   C +G+
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGD 173

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S    + ++G+ P   TY+ L+  L    ++  A D+L EM   G+  D++ YN 
Sbjct: 174 VDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNA 233

Query: 121 LINGYCRCGNAKKAFSLHDEMIH-KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           L++G  R G  +KA  + ++++   G  P + TY  ++  L K  R  EA +++   +A 
Sbjct: 234 LLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMAN 293

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
               D V +  LI G C +G+++ A  +  +M +  +  D   YN+L+ G C  G+  EA
Sbjct: 294 NHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEA 353

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-ITPDDN 298
            +  D     GI+   I+      TYN + +GL  +     A ELL+++ +    +PD  
Sbjct: 354 WKFWDSTGFSGIR--QIT------TYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKV 405

Query: 299 TYFSLIEGI 307
           T+ +LI G+
Sbjct: 406 TFGTLIHGL 414



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 12/256 (4%)

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE----KGIVPDSITYNIL 121
           +FRD     G  P   ++N L+   +  R+  +AD     +      + I P+  TYNI+
Sbjct: 105 AFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNII 164

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +   C  G+  +A SL   +  +G+ P  +TY++L+  L+K +++  A  L +     G+
Sbjct: 165 LRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGV 224

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDR-MKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             D V +NAL+ G    G  E+A  + +++ R     P+  TY  ++ G C+ G+ +EA 
Sbjct: 225 QADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAG 284

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M     + D +       TY  LI GLC++ + D A  +  +MV  G+  D + Y
Sbjct: 285 EVWSRMMANNHQADTV-------TYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVY 337

Query: 301 FSLIEGIASVDKAAES 316
            SLI+G   V +  E+
Sbjct: 338 NSLIKGFCEVGRTGEA 353



 Score = 42.4 bits (98), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           G++PD  TY + + G+C   R  E   +L ++   G++PT +T++ L+      G +++
Sbjct: 644 GLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQI 702


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 170/349 (48%), Gaps = 41/349 (11%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD  TY S + G+C E R+ EA+R+  +M++ G  P  VTY TLI G C  GN+ +
Sbjct: 155 RGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINL 214

Query: 64  AFSFRDEMVKQGIMPTA-------STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           A     EM+  G  P A        +YN++I EL    K  EA  +  EM ++G+ PD +
Sbjct: 215 ALKLHQEML-NGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVV 273

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           T++ LI+  C+ G   +A    + M+ +GI P + T+TSLI        +  A +LF + 
Sbjct: 274 TFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSM 333

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
            +KG  PD++ +  LI G+C   N+E A  L  EM R+   PD  T+  L+ G    GKV
Sbjct: 334 PSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKV 393

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRL-----------------------------TYNA 267
            +A++L   +K   + P ++      L                             ++N 
Sbjct: 394 GDAKKLFGVVKPHAV-PKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNC 452

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           LI GLCK ++ + A EL  ++  +G+ PD  TY  +I G      VD A
Sbjct: 453 LIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNA 501



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+ ++Y   +  +CK G+ +EA R+  +M + G+ P  VT++ LID  C +G +  A  
Sbjct: 234 KPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKK 293

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F + M+ +GI+P   T+  LI    +   +  A ++   M  KG  PD I+Y +LI GYC
Sbjct: 294 FLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYC 353

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +  N ++A  L++EM+  G  P M T+  L+  L    ++ +A +LF       +  ++ 
Sbjct: 354 KTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLY 413

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           + +  +DG C NG +  A  L  E+    +  D  ++N L+ G C+  K+E A  L +++
Sbjct: 414 ICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKL 473

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + G++PD +       TY  +I G CKN + D A  L + M   G TP+  TY +L+ G
Sbjct: 474 SQEGLQPDVV-------TYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHG 526

Query: 307 IASVDKAAE 315
               +K  E
Sbjct: 527 FYKNNKLEE 535



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 149/311 (47%), Gaps = 13/311 (4%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           ++   +  + K     +   + ++M   GL P   T N LI+  CN   +    S    +
Sbjct: 93  SFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGI 152

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
           +++G +P   TY  LI  L ME ++ EA  +   M + G  P+ +TY  LI G CR GN 
Sbjct: 153 MRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNI 212

Query: 132 KKAFSLHDEMIHK------GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
             A  LH EM++         +P + +Y  +I  L K  +  EA +LF   + +G+ PD+
Sbjct: 213 NLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDV 272

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V F+ALID  C  G +  A   L+ M    + PD  T+ +L+ G C  G ++ A+ L   
Sbjct: 273 VTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLS 332

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +G +PD IS       Y  LI G CK    + A +L  EM+  G  PD  T+  L++
Sbjct: 333 MPSKGYEPDVIS-------YTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLK 385

Query: 306 GIASVDKAAES 316
           G+    K  ++
Sbjct: 386 GLFLAGKVGDA 396



 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 161/346 (46%), Gaps = 34/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ +T    ++ +C   R+ E    +  +   G +P  VTY +LI G C +  
Sbjct: 117 MHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHR 176

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM--GEKGIV----PD 114
           +  A      M K G  P   TY  LI  L     +  A  + +EM  G         P+
Sbjct: 177 ISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPN 236

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
             +YNI+I+  C+ G  K+A  L +EM+ +G++P ++T+++LI  L K+  +IEA +  E
Sbjct: 237 IFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLE 296

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G++PD+  F +LI+G C  G+++ A  L   M      PD ++Y  L++G C+  
Sbjct: 297 TMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTF 356

Query: 235 KVEEARRLLDQMKRRGIKPDHISF-----------------------NPTRLTYN----- 266
            VEEA +L ++M R G  PD  +F                        P  +  N     
Sbjct: 357 NVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICS 416

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             + GLCKN     A EL  E+ S  +  D  ++  LI+G+    K
Sbjct: 417 VFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARK 462



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 140/271 (51%), Gaps = 23/271 (8%)

Query: 56  CNKGNLE--MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
           C KGN+    A  F D M++  I     ++NLL+  L   +   +   + K+M   G+ P
Sbjct: 70  CKKGNITSTQALQFFDLMMRSII-----SFNLLLGALAKIKHYSQVFSLYKKMHLAGLSP 124

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           +  T NILIN  C     ++  S    ++ +G  P ++TYTSLI  L  ++R+ EA +LF
Sbjct: 125 NFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLF 184

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM------DRMKVHPDEVTYNTLM 227
                 G  P++V +  LI G C  GNI  A  L +EM        +   P+  +YN ++
Sbjct: 185 IRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIII 244

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
              C+ GK +EA+RL ++M  +G++PD +       T++ALI  LCK      A++ L  
Sbjct: 245 DELCKIGKWKEAKRLFNEMVDQGVRPDVV-------TFSALIDTLCKEGMVIEAKKFLET 297

Query: 288 MVSKGITPDDNTYFSLIEG---IASVDKAAE 315
           M+ +GI PD  T+ SLIEG   +  +D A E
Sbjct: 298 MMLRGIVPDLFTFTSLIEGFCLVGDLDSAKE 328



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 20/304 (6%)

Query: 21  CKEGRLE--EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP 78
           CK+G +   +A +  + M       + +++N L+       +    FS   +M   G+ P
Sbjct: 70  CKKGNITSTQALQFFDLMMR-----SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSP 124

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
              T N+LI+ L    ++ E    +  +  +G +PD +TY  LI G C      +A  L 
Sbjct: 125 NFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLF 184

Query: 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL------AKGMLPDIVMFNALI 192
             M   G  P ++TY +LI  L +   +  A +L +  L      A    P+I  +N +I
Sbjct: 185 IRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIII 244

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           D  C  G  + A  L  EM    V PD VT++ L+   C++G V EA++ L+ M  RGI 
Sbjct: 245 DELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIV 304

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           PD         T+ +LI+G C   + D A+EL   M SKG  PD  +Y  LI G      
Sbjct: 305 PD-------LFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFN 357

Query: 313 AAES 316
             E+
Sbjct: 358 VEEA 361



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K   V  + Y    F+ G+CK G L EA  +  ++K   +     ++N LIDG C    
Sbjct: 403 VKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARK 462

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A+   +++ ++G+ P   TY ++I+      ++  A+ + + M E G  P+ +TY+ 
Sbjct: 463 LETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSA 522

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           L++G+ +    ++   L  +MI K +      YT +  ++SK  +  E   + + F
Sbjct: 523 LLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKDEKCREWLDILQRF 578


>gi|356507504|ref|XP_003522504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Glycine max]
          Length = 555

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 174/330 (52%), Gaps = 22/330 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG QPD   Y   ++G CK GRLEEA   L  ++ +GL      Y++LI G+ +   
Sbjct: 39  MKERGFQPDLICYSVLINGYCKLGRLEEAISFLRLLERDGLALGIKGYSSLIAGFFSARR 98

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A ++   M K+GI+P    Y +LI  L  E ++ EA  ML EM + G+VPD++ YN 
Sbjct: 99  YNEAHAWYGRMFKKGIVPDVVLYTILIRGLSSEGRVGEAAKMLGEMIQIGLVPDAVCYNE 158

Query: 121 LINGYCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +I G C  G   +A SL  E+  H+G    + T+T +I  L K+    +A ++F      
Sbjct: 159 IIKGLCDVGLLDRARSLQLEISEHQGFH-NVCTHTIIICDLCKRGMAEKAQEIFNKMEKL 217

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD---------RMKVHPDEVTYNTLMHGR 230
           G  P IV FNAL+DG C  G +E A  LL +M+         R+    D+V  +  +  +
Sbjct: 218 GCFPSIVTFNALMDGLCKAGKLEEAHLLLYKMEIGRSPSLFFRLSQGSDQVLDSVALQKK 277

Query: 231 ----CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
               C  G++ +A +LL Q+   G+ PD +       TYN LI G CK    + A +L +
Sbjct: 278 VEQMCEAGQLLDAYKLLIQLAGSGVMPDIV-------TYNVLINGFCKASNINGALKLFK 330

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +M +KG++P+  TY +LI+G+  V +  ++
Sbjct: 331 DMQNKGLSPNPVTYGTLIDGLFRVGREEDA 360



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 152/321 (47%), Gaps = 23/321 (7%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           T+   +  +CK G  E+A  +  +M++ G  P+ VT+N L+DG C  G LE A     +M
Sbjct: 190 THTIIICDLCKRGMAEKAQEIFNKMEKLGCFPSIVTFNALMDGLCKAGKLEEAHLLLYKM 249

Query: 72  -----------VKQGIMPTASTYNLL--IHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
                      + QG      +  L   + ++    ++++A  +L ++   G++PD +TY
Sbjct: 250 EIGRSPSLFFRLSQGSDQVLDSVALQKKVEQMCEAGQLLDAYKLLIQLAGSGVMPDIVTY 309

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N+LING+C+  N   A  L  +M +KG+ P  +TY +LI  L +  R  +A ++ ++ L 
Sbjct: 310 NVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTLIDGLFRVGREEDAFKIHKHMLK 369

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G  P   ++ AL+   C    + +AFSL  E  +     ++ + N L     R G+VE+
Sbjct: 370 HGCEPSFEVYRALMTWLCRKKRVSQAFSLYLEYLKNLRGREDNSINALEECFVR-GEVEQ 428

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLT-YNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           A R L ++  R        F    L  Y  L+ G C+ ++ + A  +   +    I  + 
Sbjct: 429 AFRGLLELDFR--------FRDFALAPYTILLIGFCQAEKVNEALLIFTVLDKFNININP 480

Query: 298 NTYFSLIEGIASVDKAAESSN 318
            +   LI G++   +  ++ N
Sbjct: 481 ASCVYLIRGLSENGRLDDAVN 501



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 129/304 (42%), Gaps = 44/304 (14%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           DS      V  MC+ G+L +A ++L Q+  +G++P  VTYN LI+G+C   N+  A    
Sbjct: 270 DSVALQKKVEQMCEAGQLLDAYKLLIQLAGSGVMPDIVTYNVLINGFCKASNINGALKLF 329

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            +M  +G+ P   TY                                     LI+G  R 
Sbjct: 330 KDMQNKGLSPNPVTY-----------------------------------GTLIDGLFRV 354

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  + AF +H  M+  G +P+   Y +L+  L ++ R+ +A  L+  +L      +    
Sbjct: 355 GREEDAFKIHKHMLKHGCEPSFEVYRALMTWLCRKKRVSQAFSLYLEYLKNLRGREDNSI 414

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           NAL +     G +E+AF  L E+D          Y  L+ G C+  KV EA  +   + +
Sbjct: 415 NALEECF-VRGEVEQAFRGLLELDFRFRDFALAPYTILLIGFCQAEKVNEALLIFTVLDK 473

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
                 +I+ NP    Y  LI+GL +N   D A  +    + KG     +    L++ I 
Sbjct: 474 F-----NININPASCVY--LIRGLSENGRLDDAVNIFVYTLDKGFKLKSSVCEQLLK-IL 525

Query: 309 SVDK 312
           S DK
Sbjct: 526 SQDK 529



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 40/218 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +   GV PD  TY   ++G CK   +  A ++ + M+  GL P  VTY TLIDG    G 
Sbjct: 297 LAGSGVMPDIVTYNVLINGFCKASNINGALKLFKDMQNKGLSPNPVTYGTLIDGLFRVGR 356

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM------------------ 102
            E AF     M+K G  P+   Y  L+  L  ++++ +A  +                  
Sbjct: 357 EEDAFKIHKHMLKHGCEPSFEVYRALMTWLCRKKRVSQAFSLYLEYLKNLRGREDNSINA 416

Query: 103 LKEMGEKGIVPDSI----------------TYNILINGYCRCGNAKKA---FSLHDEMIH 143
           L+E   +G V  +                  Y IL+ G+C+     +A   F++ D+  +
Sbjct: 417 LEECFVRGEVEQAFRGLLELDFRFRDFALAPYTILLIGFCQAEKVNEALLIFTVLDKF-N 475

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
             I P    Y  LI  LS+  R+ +A  +F   L KG 
Sbjct: 476 ININPASCVY--LIRGLSENGRLDDAVNIFVYTLDKGF 511



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P ++ F+A+  G C     + A  L   M      PD + Y+ L++G C+ G++EEA  
Sbjct: 10  VPSVISFSAIFSGLCHVKRADEAHRLFNVMKERGFQPDLICYSVLINGYCKLGRLEEAIS 69

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
            L  ++R G+             Y++LI G    +  + A      M  KGI PD   Y 
Sbjct: 70  FLRLLERDGLALGIKG-------YSSLIAGFFSARRYNEAHAWYGRMFKKGIVPDVVLYT 122

Query: 302 SLIEGIASVDKAAESS 317
            LI G++S  +  E++
Sbjct: 123 ILIRGLSSEGRVGEAA 138


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P+ +T    +  +CK+  +E A ++L++M   G++P  VTY T++ GY ++G++  A
Sbjct: 196 GVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNA 255

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                E+  +G +P A+TY +L++    + ++ +A  ++ +MGE G+ P+ +TY +++  
Sbjct: 256 NKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEA 315

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC+   A +A +L D+M+ +   P+      +I VL +  ++ EA +L++  L K  +PD
Sbjct: 316 YCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPD 375

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             + + LI   C  G +  A  L  E +R  + P  +TYNTL+ G C +G++ EA +L D
Sbjct: 376 NAIMSTLIHWLCKEGKVWEARKLFGEFERGAI-PSLLTYNTLIAGMCEKGELSEAGKLWD 434

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +G KP+         TYN LI+G  K         +L EM+     P+ +TY  LI
Sbjct: 435 DMMEKGYKPNA-------FTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILI 487

Query: 305 E 305
           E
Sbjct: 488 E 488



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 155/311 (49%), Gaps = 9/311 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGNLEMA 64
           VQ    +  + ++   +  R +    M +  +   G++P   T N LI   C K ++E A
Sbjct: 161 VQRSVRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESA 220

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEM   G++P   TY  ++        MV A+ +  E+ ++G +PD+ TY IL+NG
Sbjct: 221 VKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNG 280

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YC  G    A  L D+M   G++P  +TY  ++    K+ +  EA  L ++ L +  +P 
Sbjct: 281 YCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPS 340

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             +   +ID  C  G IE A  L K M +    PD    +TL+H  C++GKV EAR+L  
Sbjct: 341 SALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFG 400

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           + +R  I        P+ LTYN LI G+C+  E   A +L  +M+ KG  P+  TY  LI
Sbjct: 401 EFERGAI--------PSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLI 452

Query: 305 EGIASVDKAAE 315
           +G + +  A E
Sbjct: 453 KGFSKIGNAKE 463



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 162/320 (50%), Gaps = 10/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G+ P+  TY + + G    G +  A+++  ++ + G +P A TY  L++GYC +G 
Sbjct: 227 MPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGR 286

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D+M + G+ P   TY +++     E+K  EA ++L +M E+  VP S     
Sbjct: 287 LADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCK 346

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C  G  ++A  L   M+ K   P     ++LI  L K+ ++ EA +LF  F  +G
Sbjct: 347 VIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEF-ERG 405

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P ++ +N LI G C  G +  A  L  +M      P+  TYN L+ G  + G  +E  
Sbjct: 406 AIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGI 465

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK-NQEGDLAEELLREMVSKGITPDDNT 299
           R+L++M      P+       + TY  LI+ LCK   EG++ + +   M S G+  D   
Sbjct: 466 RILEEMLDNRCMPN-------KSTYAILIEELCKMGMEGEVDKVVSMAMASGGVDSDSWD 518

Query: 300 YFSLIEGIASVDKAAESSNS 319
            F L + + ++D+ +++ +S
Sbjct: 519 LF-LNKAVGNLDRGSKALDS 537



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 16/242 (6%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           TY+ +IH+L   R     + +L ++ +  I      +  +I  Y   G    A      +
Sbjct: 97  TYDSIIHKLSRARVFGPVELLLSDLHKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRI 156

Query: 142 IHKGIQPTMLTYTSLI--FVLSKQNRMIEADQLFENFLAK-GMLPDIVMFNALIDGHCTN 198
               +Q ++ +  +L+  FV +K+  ++ A  +F+N  +K G+LP++   N LI   C  
Sbjct: 157 QDFNVQRSVRSLNTLLNAFVQNKRYDLVHA--MFKNCRSKYGVLPNVFTCNILIKALCKK 214

Query: 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258
            ++E A  +L EM  M + P+ VTY T++ G   +G +  A ++  ++  RG  PD    
Sbjct: 215 NDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDAT-- 272

Query: 259 NPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                TY  L+ G C  ++G LA+  +L+ +M   G+ P++ TY  ++E      KA E+
Sbjct: 273 -----TYTILMNGYC--EQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEA 325

Query: 317 SN 318
            N
Sbjct: 326 RN 327


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 171/334 (51%), Gaps = 29/334 (8%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG + D   YG+ ++G+CK G+  +A +M  +MK+  + P  + YNT+IDG C +G ++ 
Sbjct: 169 RGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDE 228

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILI 122
           A     EMV+ GI     +YN +IH      +   A  +L EM  +G + PD  T+NILI
Sbjct: 229 ACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILI 288

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G C+ G   +A+++   MI +G +P +++Y +L+        + EA Q+F+  + +  L
Sbjct: 289 DGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTAL 348

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+++ +  LI+G+C    ++ A  LL EM    + PD VTYN L+ G  + G+      L
Sbjct: 349 PNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDL 408

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
           ++ M+  G   D I++N                            P   TYN L+ GLCK
Sbjct: 409 VEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCK 468

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +     A+E+ + + +KG  P+  TY  +I G+ 
Sbjct: 469 SGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLC 502



 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
           M   G++ D Y+Y S + G C  GR + A ++L++M   G V P   T+N LIDG C  G
Sbjct: 236 MVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLG 295

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            +  A++    M+K+G  P   +YN L++   +   + EA  +  +M E+  +P+ I+Y 
Sbjct: 296 RVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYC 355

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LINGYC+     +A  L  EM +K + P  +TY  L+  LSK  R +    L E   A 
Sbjct: 356 TLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRAS 415

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G   D++ +N L+D +  +   ++A +L + +  + + P+  TYN L+ G C+ G+++ A
Sbjct: 416 GQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYA 475

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + +   +  +G +P+       R TYN +I GLCK    D AE LL +MV+    P+  T
Sbjct: 476 KEIFQLLSAKGCQPN------IR-TYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYIT 528

Query: 300 YFSLIEGI 307
           + +++  I
Sbjct: 529 FDTIVRAI 536



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 164/333 (49%), Gaps = 29/333 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G Q D     + + G+C +GR+ EA  +L +  + G     V Y T+I+G C  G    A
Sbjct: 135 GFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDA 194

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +M K  + P    YN +I  L  +  + EA  +  EM E GI  D  +YN +I+G
Sbjct: 195 IQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHG 254

Query: 125 YCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           +C  G  + A  L DEM+ +G + P + T+  LI  L K  R+ EA  +    + +G  P
Sbjct: 255 FCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKP 314

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           DIV +NAL++G+C +G++  A  +  +M      P+ ++Y TL++G C+   V+EA  LL
Sbjct: 315 DIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLL 374

Query: 244 DQMKRRGIKPDHISFN---------------------------PTRL-TYNALIQGLCKN 275
            +M  + + PD +++N                           P  L TYN L+    K+
Sbjct: 375 TEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKH 434

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           ++ D A  L + ++  GI+P+  TY  L++G+ 
Sbjct: 435 EKFDKALALFQHIIEIGISPNIRTYNILLDGLC 467



 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 8/304 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++P   T+   ++   + G++  A  +L  + + G         TL+ G C KG +  A 
Sbjct: 101 IKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAV 160

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S   E V +G       Y  +I+ L    K  +A  M  +M +  + P+ I YN +I+G 
Sbjct: 161 SLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGL 220

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-MLPD 184
           C+ G   +A  L  EM+  GI+  + +Y S+I       R   A +L +  + +G + PD
Sbjct: 221 CKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPD 280

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  FN LIDG C  G +  A++++  M +    PD V+YN LM+G C  G V EA+++ D
Sbjct: 281 VYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFD 340

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  R   P+ IS       Y  LI G CK +  D A  LL EM +K + PD  TY  L+
Sbjct: 341 KMVERTALPNVIS-------YCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLL 393

Query: 305 EGIA 308
           +G++
Sbjct: 394 DGLS 397



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 8/209 (3%)

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           I P  IT++ILIN + + G    AFSL   ++  G Q  +   T+L+  L  + R++EA 
Sbjct: 101 IKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAV 160

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
            L   ++ +G   D V +  +I+G C  G    A  +  +M +++V+P+ + YNT++ G 
Sbjct: 161 SLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGL 220

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C+QG V+EA  L  +M   GI+ D  S       YN++I G C       A +LL EMV 
Sbjct: 221 CKQGLVDEACGLCTEMVENGIELDVYS-------YNSMIHGFCSVGRFQAAVKLLDEMVV 273

Query: 291 KG-ITPDDNTYFSLIEGIASVDKAAESSN 318
           +G + PD  T+  LI+G+  + + +E+ N
Sbjct: 274 RGKVYPDVYTFNILIDGLCKLGRVSEAYN 302



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 6/244 (2%)

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
           K  I P+  T+++LI+      +M  A  +L  + + G   D      L+ G C  G   
Sbjct: 98  KPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVL 157

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A SL  E + +G +   + Y ++I  L K  +  +A Q+F       + P+++M+N +I
Sbjct: 158 EAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVI 217

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           DG C  G ++ A  L  EM    +  D  +YN+++HG C  G+ + A +LLD+M  RG  
Sbjct: 218 DGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRG-- 275

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
                  P   T+N LI GLCK      A  ++  M+ +G  PD  +Y +L+ G      
Sbjct: 276 ----KVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGS 331

Query: 313 AAES 316
             E+
Sbjct: 332 VGEA 335



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P+  TY   + G+CK GRL+ A  + + +   G  P   TYN +I G C +G L+ A
Sbjct: 451 GISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEA 510

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLME 93
            +   +MV    +P   T++ ++  +L++
Sbjct: 511 EALLYKMVNNNYLPNYITFDTIVRAILVK 539


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 157/300 (52%), Gaps = 7/300 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+ ++ S ++   K GR +EA  +L++M    L P A++YN+ I+     G  EMA
Sbjct: 385 GLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMA 444

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              R +M  +G+ P   + N+ I       +  E  ++L++M  +G+ P+ ITYN  I  
Sbjct: 445 LELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKT 504

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             + G  +KA  L  +M    + P  +TY S I   SK+ R  EA  L      +G+ PD
Sbjct: 505 CGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPD 564

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           ++ + A ID +  NG  ERA  LL++M    + P+ +TYN+++    R G+ E+A  LL 
Sbjct: 565 VISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLK 624

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++K   + PD +S       YN  I    K    + A +LLREM ++G+TPD  +Y S I
Sbjct: 625 ELKETAVAPDLMS-------YNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAI 677



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 158/305 (51%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S+GV PD  +Y + +      G+ E +  +L++M   G+ P  + +N+ I      G 
Sbjct: 311 MESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQ 370

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A     E+   G+ P A+++N  I       +  EA ++LKEM  K + PD+I+YN 
Sbjct: 371 WEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNS 430

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I    + G  + A  L  +M  KG+ P +++    I    ++ R  E  +L     A+G
Sbjct: 431 AIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQG 490

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +N+ I      G  E+A  LL +M  + + PD +TYN+ +    ++G+ +EA 
Sbjct: 491 LTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAV 550

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M  +G+ PD IS       Y A I    KN + + A ELLR+M +KG+TP+  TY
Sbjct: 551 ALLREMPGQGLTPDVIS-------YTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITY 603

Query: 301 FSLIE 305
            S+I+
Sbjct: 604 NSVIK 608



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R V PD  +Y S +    + G+ E    +L +M   GL P A+TYN++I G   +G 
Sbjct: 206 MADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQ 265

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S   EM  +G+ P   +YN+ I       +  EA ++L++M  +G+ PD I+Y+ 
Sbjct: 266 WKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDA 325

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I      G  + +  L DEM  +G+ P  + + S I    K  +  +A +L     A G
Sbjct: 326 AIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALG 385

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   FN+ I     +G  + A  LLKEM   ++ PD ++YN+ +    + G+ E A 
Sbjct: 386 LTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMAL 445

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  QM  +G+ P+ IS N   +   A  +   + QEG    ELLR+M ++G+TP+  TY
Sbjct: 446 ELRRQMPTKGLTPNVISSN---IAIRACGE-RGRWQEG---LELLRQMPAQGLTPNVITY 498

Query: 301 FSLIE 305
            S I+
Sbjct: 499 NSAIK 503



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 148/305 (48%), Gaps = 7/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++ ++PD+ +Y S +    K G+ E A  +  QM   GL P  ++ N  I     +G 
Sbjct: 416 MPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGR 475

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +       +M  QG+ P   TYN  I       +  +A D+L +M E  + PDSITYN 
Sbjct: 476 WQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNS 535

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I    + G  K+A +L  EM  +G+ P +++YT+ I    K  +   A +L      KG
Sbjct: 536 AIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKG 595

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P+++ +N++I      G  E+A  LLKE+    V PD ++YN  +    ++G+ EEA 
Sbjct: 596 LTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEAL 655

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL +M   G+ PD IS       Y + I+      E + A  LL  M + G++P   +Y
Sbjct: 656 DLLREMPAEGLTPDVIS-------YTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSY 708

Query: 301 FSLIE 305
              IE
Sbjct: 709 SLAIE 713



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 7/292 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P+ + Y S +       + E A  +L +M +  +VP  ++YN+ I      G  E  
Sbjct: 175 GVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERV 234

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G+ P A TYN +I     E +  EA  +L EM  KG+ P++I+YN+ I  
Sbjct: 235 IGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRA 294

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             R G  K+A  +  +M  +G+ P +++Y + I       +   +  L +    +G+ P+
Sbjct: 295 CGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPN 354

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + FN+ I      G  E+A  LL+E+  + + PD  ++N+ +    + G+ +EA  LL 
Sbjct: 355 TIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLK 414

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +M  + +KPD IS       YN+ I+   K  + ++A EL R+M +KG+TP+
Sbjct: 415 EMPAKRLKPDAIS-------YNSAIEACGKGGQWEMALELRRQMPTKGLTPN 459



 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 140/282 (49%), Gaps = 9/282 (3%)

Query: 24  GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIMPTAST 82
           G+  EA  +L++MKE G+V  A +Y T I     +G  E A     E+ +Q G+ P    
Sbjct: 124 GKWREALGILDEMKEGGVV-CAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFC 182

Query: 83  YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
           YN  I       +   A  +L+EM ++ +VPD I+YN  I    R G  ++   L  EM 
Sbjct: 183 YNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMP 242

Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
             G+ P  +TY S+I    K+ +  EA  +     AKG+ P+ + +N  I     +G  +
Sbjct: 243 SVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWK 302

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A  +L++M+   V PD ++Y+  +      G+ E +  LLD+M  RG+ P+ I F    
Sbjct: 303 EAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHF---- 358

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
              N+ I    K  + + A ELLRE+ + G+TPD  ++ S I
Sbjct: 359 ---NSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAI 397



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 127/257 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P+  TY S +    K G+ E+A  +L +MKE  + P ++TYN+ I     +G 
Sbjct: 486 MPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGR 545

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A +   EM  QG+ P   +Y   I       +   A ++L++M  KG+ P+ ITYN 
Sbjct: 546 WKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNS 605

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    R G  +KA  L  E+    + P +++Y   I    K+ R  EA  L     A+G
Sbjct: 606 VIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEG 665

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ + + I      G  E+A  LL  M    V P   +Y+  +    + G+ EEA 
Sbjct: 666 LTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAV 725

Query: 241 RLLDQMKRRGIKPDHIS 257
            L+ +M +RG+   +IS
Sbjct: 726 CLVREMAQRGLSHRNIS 742



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 10/111 (9%)

Query: 198 NGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQG-KVEEARRLLDQMKRRGIKPDH 255
            G  E+A  LL+E+ ++  V P+   YN+ +   C  G + E A  LL +M  R + PD 
Sbjct: 157 QGQWEKALELLREIPEQEGVSPNVFCYNSAIEA-CGSGDQWEIAVSLLREMADREVVPDE 215

Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           IS       YN+ I+   +  + +    LLREM S G+TPD  TY S+I G
Sbjct: 216 IS-------YNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITG 259


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 5/310 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           MK  GV P   T+ S +S + K GR   A ++ ++M +  G+ P   T+N LI G+C   
Sbjct: 262 MKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNS 321

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSIT 117
            ++  F F  EM +    P   TYN L+  L    K+  A +++K M +K   + P+ +T
Sbjct: 322 MVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVT 381

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           Y  LI GYC   +  +A SL  EM+ +G++P  +TY +LI  L +  ++ +  ++ E  +
Sbjct: 382 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMV 441

Query: 178 AKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             G  +PD    N LI  HCT G +E AFS+ ++M  ++V PD  TY+ L+   C++G  
Sbjct: 442 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 501

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             A    D++  + I    +   P    YN + + LC N +   AE + R+++ +G T D
Sbjct: 502 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQD 560

Query: 297 DNTYFSLIEG 306
             +Y +LI G
Sbjct: 561 PPSYKTLILG 570



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 154/335 (45%), Gaps = 56/335 (16%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQM--KENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           PD  TY + V G+C+ G+++ A  +++ M  K   L P  VTY TLI GYC K ++  A 
Sbjct: 340 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 399

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-GEKGIVPDSITYNILING 124
           S   EMV +G+ P   TYN LI  L   +K+ +  ++L+ M G+ G +PD+ T N LI  
Sbjct: 400 SLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKA 459

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-- 182
           +C  G  ++AFS+ ++M    +QP   TY+ L+  L ++     A++ F+    K +L  
Sbjct: 460 HCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLH 519

Query: 183 -----PDIVMFN----------------------------------ALIDGHCTNGNIER 203
                P +  +N                                   LI GHC  G  E 
Sbjct: 520 DVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEA 579

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
            F LL  M R    PD  TY  ++ G  ++G    A + L++M    +K  H+   PT  
Sbjct: 580 GFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKM----LKSSHL---PTTA 632

Query: 264 TYNALIQGLCKN-----QEGDLAEELLREMVSKGI 293
            +++++  L +      Q  DL+   +R +   G+
Sbjct: 633 IFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGL 667



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 23/254 (9%)

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN--GYCRCGNAKK 133
           + P+ S   +L   L + R   +A    + +  KG   +  +Y ++I   G  R  NA +
Sbjct: 182 LAPSLSKTTVL-QTLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAAR 240

Query: 134 AFSLHDE--------------MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL-A 178
            F    E              M   G+ P+++T+ SL+ ++ K+ R   A QLF+  L  
Sbjct: 241 NFVFSIEKKSGGAESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDT 300

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+ PD   FN LI G C N  ++  F   KEM R K  PD VTYNTL+ G CR GKV+ 
Sbjct: 301 YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKI 360

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  ++  M ++   P+    +P  +TY  LI+G C  Q+   A  LL EMVS+G+ P+  
Sbjct: 361 AHNVVKGMVKKS--PN---LSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKI 415

Query: 299 TYFSLIEGIASVDK 312
           TY +LI+G+    K
Sbjct: 416 TYNTLIQGLCEAQK 429



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 20/209 (9%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG Q D  +Y + + G C+EG  E    +L  M     VP A TY  +IDG   KG+  +
Sbjct: 556 RGTQ-DPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVL 614

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELL-MERKMVEADDMLKEMGEKGIVPDSITYNILI 122
           A    ++M+K   +PT + ++ ++  L+  ER++ +  D+            + T  +L 
Sbjct: 615 AHKSLEKMLKSSHLPTTAIFHSILAALVEKERRIRQNIDL-----------STHTVRLLY 663

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
               + G   KAF     +   G    ++    L+  L +  +++EA ++    L K   
Sbjct: 664 ----KSGLQDKAFMTIGLLYENGY---LVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQS 716

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            DI M + +I G C    +  AF+L  E+
Sbjct: 717 VDIDMCSTVISGLCKAHKVSEAFALYYEL 745



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           +  + K M  + V P  VT+N+L+    ++G+   A++L D+M       D     P   
Sbjct: 255 SIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML------DTYGVTPDTY 308

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           T+N LI+G C N   D      +EM      PD  TY +L++G+    K   + N
Sbjct: 309 TFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHN 363


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+QP+  TY + V+  CK G L  A  +L +M   G  P   T+  L+ G  N G 
Sbjct: 260 MVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGR 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      MV +G  P+  +YN+LI  L     +  A  +L +M + G  P++ TY+ 
Sbjct: 320 VHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYST 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G+   A S+ ++M   G +P ++ YT+++ V  K+    +A+ L +  L + 
Sbjct: 380 LIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVEN 439

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V FN LI   C    + RA  +  EM R    P+  TYN L+HG  R+G   +A 
Sbjct: 440 CPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDAL 499

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +++ +M+  GI+   +       TYN ++ GLC+ + G  A   +  M+ +GI PD  T+
Sbjct: 500 QMVIEMQNHGIELSLV-------TYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTF 552

Query: 301 FSLIEG 306
            ++I  
Sbjct: 553 TAIIHA 558



 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 165/335 (49%), Gaps = 33/335 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GVQP+ +TY   V  +C+  R+  A +ML++M   G  P  VTY T++   C  G 
Sbjct: 160 MRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGR 219

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A       V     P A++YN +I  L  E +M E   ++ +M  +G+ P+ ITY  
Sbjct: 220 VDEATE-----VLSAAPPVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTT 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N +C+ G  + A ++   M+  G  P + T+T+L+  L    R+ +A  +++  +A+G
Sbjct: 275 IVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  V +N LI G C+ G+++ A S+L +M++    P+  TY+TL+ G  + G ++ A 
Sbjct: 335 WAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAI 394

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            + + M R G KP+ + +                             P  +T+N LI+ L
Sbjct: 395 SIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSL 454

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           C  +    A  +  EM   G  P+  TY  L+ G+
Sbjct: 455 CNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGL 489



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 145/307 (47%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  P + +Y   + G+C  G L+ AS +L  M+++G  P A TY+TLIDG+   G+
Sbjct: 330 MVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGD 389

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  ++M + G  P    Y  ++     +    +A+ ++ +M  +   P+++T+N 
Sbjct: 390 LDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNT 449

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI   C C    +A  +  EM   G  P   TY  L+  L ++    +A Q+       G
Sbjct: 450 LIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHG 509

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +   +V +N ++ G C       A   +  M    + PD  T+  ++H  C++G+V  A 
Sbjct: 510 IELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAA 569

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +L  M       + ++     L Y  L+  LC   + + A   L +M+ +GI P+  T+
Sbjct: 570 WILGAM-------NVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTW 622

Query: 301 FSLIEGI 307
             L+ G+
Sbjct: 623 NVLVRGV 629



 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 139/314 (44%), Gaps = 21/314 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLE----QMKENGLV-PTAV-TYNTLIDG 54
           M+ RGV     T G+ V+ +    R     R L+     + + G   PTA   YN LID 
Sbjct: 87  MRLRGV---PCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPTAPRLYNHLIDA 143

Query: 55  YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
              +  +         M K G+ P   TYNLL+  L    ++  A  ML EM  KG  PD
Sbjct: 144 LLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPD 203

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            +TY  +++  C  G   +A       +     P   +Y ++I  L ++ RM E   +  
Sbjct: 204 DVTYGTIVSALCTLGRVDEATE-----VLSAAPPVAASYNAVILALCREFRMQEVFAVVG 258

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           + + +G+ P+++ +  +++  C  G +  A ++L  M      P+  T+  L+ G    G
Sbjct: 259 DMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDG 318

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           +V +A  +   M   G  P  +S       YN LI+GLC   +   A  +L +M   G  
Sbjct: 319 RVHDALDMWKCMVAEGWAPSTVS-------YNVLIRGLCSVGDLKGASSVLNDMEQHGCF 371

Query: 295 PDDNTYFSLIEGIA 308
           P+  TY +LI+G +
Sbjct: 372 PNARTYSTLIDGFS 385



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           YN L+    R+  V     +   M++ G++P+         TYN L++ LC+N     A 
Sbjct: 137 YNHLIDALLRENMVGAVALVCGNMRKDGVQPN-------VFTYNLLVRALCQNHRVGAAR 189

Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
           ++L EM +KG  PDD TY +++  + ++ +  E++
Sbjct: 190 KMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEAT 224


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 158/305 (51%), Gaps = 11/305 (3%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD +T+   +SG+CK G+L +A  + + M+  GL+P+ VTYNTLIDGY   G     +
Sbjct: 184 VSPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMY 243

Query: 66  S---FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
                  EM + GI P   T+N+LI+    E  +  A  + +EM + GI  + +TY  L+
Sbjct: 244 HVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLV 303

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G CR G  + +  L +EM   G+  T+ T  S++    K+  M+EA+   +    KGM 
Sbjct: 304 SGLCREGKVEDSMKLVEEMEELGLA-TLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMK 362

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++V +N LIDG+   G ++ A +    M    + PD  TYN L+ G            L
Sbjct: 363 PNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGL 422

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           LD+MK  G+K D +       TYN LI  LC   E   A +LL EMV  G+ P   TY +
Sbjct: 423 LDEMKETGVKADLV-------TYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNA 475

Query: 303 LIEGI 307
           +I G 
Sbjct: 476 IINGF 480



 Score =  163 bits (413), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 161/331 (48%), Gaps = 32/331 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGR---LEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57
           M+  G+ P   TY + + G  K GR   +     +L++M + G+ P  VT+N LI+GYC 
Sbjct: 214 MRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLINGYCK 273

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           + N+  A    +EM + GI     TY  L+  L  E K+ ++  +++EM E G+     T
Sbjct: 274 ESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLP-T 332

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
            N ++NG+C+ G   +A    D M  KG++P ++TY +LI    +  +M EA        
Sbjct: 333 LNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMA 392

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+ PD+  +N LI G  T+ +      LL EM    V  D VTYN L+   C +G+V 
Sbjct: 393 GKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVR 452

Query: 238 EARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALI 269
           +A +LLD+M   G++P H ++N                               +T N  +
Sbjct: 453 KAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFL 512

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +  CK  + D A  +L EM+ KG+ P+  TY
Sbjct: 513 KYFCKMGKMDEANVVLNEMLEKGLVPNRITY 543



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 133/245 (54%), Gaps = 11/245 (4%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P+A + N L+  L+   ++  A+   +    + + PD  T+NI+I+G C+ G  +KA  +
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDV 210

Query: 138 HDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
             +M   G+ P+++TY +LI   +   +  +M   D L +     G+ P++V FN LI+G
Sbjct: 211 AKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLING 270

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           +C   NI  A  + +EM +  +  + VTY +L+ G CR+GKVE++ +L+++M+  G+   
Sbjct: 271 YCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLA-- 328

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
                 T  T N+++ G CK      AE  +  M  KG+ P+  TY +LI+G   + K  
Sbjct: 329 ------TLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMK 382

Query: 315 ESSNS 319
           E++ +
Sbjct: 383 EATAA 387



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 144/273 (52%), Gaps = 17/273 (6%)

Query: 43  PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102
           P+A + N L+        +++A       +++ + P   T+N++I  L    ++ +A D+
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDV 210

Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS---LHDEMIHKGIQPTMLTYTSLIFV 159
            K+M   G++P  +TYN LI+GY + G A K +    L  EM   GI P ++T+  LI  
Sbjct: 211 AKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLING 270

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
             K++ +  A ++FE     G+  ++V + +L+ G C  G +E +  L++EM+ + +   
Sbjct: 271 YCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATL 330

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG---LCKNQ 276
             T N++++G C++G + EA   +D M ++G+KP+ +       TYN LI G   L K +
Sbjct: 331 P-TLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVV-------TYNTLIDGYQRLGKMK 382

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           E   A+     M  KGI+PD  TY  LI G  +
Sbjct: 383 EATAAKG---AMAGKGISPDVKTYNCLITGFTT 412



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 10/173 (5%)

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           +P+  +  +L+  L + +R+  A++ F   L + + PD   FN +I G C  G + +A  
Sbjct: 150 RPSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGD 209

Query: 207 LLKEMDRMKVHPDEVTYNTLMHG---RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           + K+M    + P  VTYNTL+ G     R GK+     LL +M + GI P+ ++F     
Sbjct: 210 VAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTF----- 264

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             N LI G CK      A ++  EM   GI  +  TY SL+ G+    K  +S
Sbjct: 265 --NVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDS 315



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           LL   D  +  P   + N L+    R  +V+ A R      RR + PD       + T+N
Sbjct: 140 LLAGADYPRYRPSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPD-------KFTFN 192

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            +I GLCK  +   A ++ ++M   G+ P   TY +LI+G     +A +
Sbjct: 193 IVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGK 241


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 166/308 (53%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+  DS      V+G+C  GR +EA ++LE + E G+ P+ V +N++I  Y N G  E A
Sbjct: 427 GLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERA 486

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F     MVK G+ P++ST + L+  L+ +  + EA   L +M +KG    ++ + +L++G
Sbjct: 487 FYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDG 546

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y R G    A SL +EM  +G+ P  + + + I  L     M +A  +F + L KG +P+
Sbjct: 547 YFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPN 606

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             ++N+LI G C  G +  A  L++EM++  + PD  T N ++ G C+QG+++ A     
Sbjct: 607 NFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFM 666

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M R G+ PD +       TYN LI G CK  +   A++L+ +M   G  PD  TY   I
Sbjct: 667 DMCRMGLSPDIV-------TYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRI 719

Query: 305 EGIASVDK 312
            G  +V K
Sbjct: 720 HGYCTVRK 727



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 8/299 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P S T  S +  + ++G L+EA   L  M + G   T + +  L+DGY   G 
Sbjct: 493 MVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGA 552

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + MA S  +EM  +G+ P A  +   I+ L +   M +A D+  +M  KG VP++  YN 
Sbjct: 553 VNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNS 612

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C+ G   +A  L  EM  +G+ P + T   +I  L KQ RM  A + F +    G
Sbjct: 613 LIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMG 672

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV +N LIDG+C   ++  A  L+ +M      PD  TYN  +HG C   K+  A 
Sbjct: 673 LSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAV 732

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            +L+++   GI P+ +       TYN +I  +C N   D A  L  +++     P+  T
Sbjct: 733 MILEELISVGIVPNTV-------TYNTMINAVC-NVILDHAMILTAKLLKMAFVPNTVT 783



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 157/345 (45%), Gaps = 42/345 (12%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD Y+Y   ++  C +G+   A  +L  M ENG  P+  T+ T+ID +C +GN+E+A  
Sbjct: 289 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARK 348

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           + DE+   G+      YN++I   +  R + +A+ + +EM  K IVPD IT+N L+ G+ 
Sbjct: 349 YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHY 408

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G  +    L  ++   G+          +  L    R  EA +L EN L KG+ P +V
Sbjct: 409 RYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVV 468

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT------------------------ 222
            FN++I  +   G  ERAF     M +  + P   T                        
Sbjct: 469 AFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDM 528

Query: 223 -----------YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
                      +  L+ G  R G V  A  L ++MK RG+ PD ++F        A I G
Sbjct: 529 IDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFA-------AFING 581

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           LC +     A ++  +M+ KG  P++  Y SLI G   V K  E+
Sbjct: 582 LCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEA 626



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 42/337 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+  ++  Y   +SG  K   + +A+ + E+M+   +VP  +T+NTL+ G+   G  E  
Sbjct: 357 GLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDG 416

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                ++   G++  +S  ++ +  L    +  EA  +L+ + EKGI P  + +N +I  
Sbjct: 417 NRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAA 476

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE---------------- 168
           Y   G  ++AF  +  M+  G+ P+  T +SL+  L ++  + E                
Sbjct: 477 YGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVT 536

Query: 169 -------------------ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
                              A+ L+     +G+ PD V F A I+G C +G +  A+ +  
Sbjct: 537 NMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFS 596

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           +M R    P+   YN+L+ G C+ GK+ EA +L+ +M +RG+ PD         T N +I
Sbjct: 597 DMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDI-------FTVNMII 649

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            GLCK     LA E   +M   G++PD  TY +LI+G
Sbjct: 650 CGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDG 686



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+++ Y S + G CK G+L EA +++ +M + GL+P   T N +I G C +G 
Sbjct: 598 MLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGR 657

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M + G+ P   TYN LI        +  ADD++ +M + G  PD  TYNI
Sbjct: 658 MKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNI 717

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE-ADQLFENFLAK 179
            I+GYC      +A  + +E+I  GI P  +TY ++I  +   N +++ A  L    L  
Sbjct: 718 RIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVC--NVILDHAMILTAKLLKM 775

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
             +P+ V  N L+   C  G  E+A    +++  + +  DE T+
Sbjct: 776 AFVPNTVTVNVLLSQFCKQGMPEKAIFWGQKLSEIHLDFDETTH 819



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 134/279 (48%), Gaps = 7/279 (2%)

Query: 28  EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
           EA  +L +M+E G+ P     + L       G+    +    ++V++G  P   T+NLLI
Sbjct: 205 EALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLI 264

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
            E   +      + +L  MG+    PD  +YNI+IN  C  G +  A  L + MI  G +
Sbjct: 265 LEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCK 324

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P++ T+ ++I    K+  +  A + F+     G+  + +++N +I G+    +I +A  L
Sbjct: 325 PSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLL 384

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
            +EM    + PD +T+NTL+ G  R GK E+  RLL  +   G+  D    + T      
Sbjct: 385 FEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVT------ 438

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + GLC     D A +LL  ++ KGI P    + S+I  
Sbjct: 439 -VAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAA 476



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 12/317 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV P+          + + G      ++   +   G  P   T+N LI  +C KG 
Sbjct: 213 MREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGW 272

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +  +    M K    P   +YN++I+   ++ +   A  +L  M E G  P   T+  
Sbjct: 273 TRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCT 332

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ GN + A    DE+   G+    + Y  +I    K   + +A+ LFE    K 
Sbjct: 333 IIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKD 392

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD + FN L+ GH   G  E    LL+++    +  D    +  + G C  G+ +EA 
Sbjct: 393 IVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAM 452

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTY-NALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           +LL+ +  +GI P  ++FN     Y NA ++       G         MV  G+TP  +T
Sbjct: 453 KLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYG--------IMVKFGLTPSSST 504

Query: 300 YFSLIEGIA---SVDKA 313
             SL+  +    S+D+A
Sbjct: 505 CSSLLISLVRKGSLDEA 521



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 7/226 (3%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S  + L+   +      EA ++L +M E G+ P+    +IL     R G+    + L  +
Sbjct: 188 SVLDTLMQAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGD 247

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           ++ KG  P   T+  LI    ++      + L          PD+  +N +I+ +C  G 
Sbjct: 248 VVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQ 307

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
              A  LL  M      P   T+ T++   C++G VE AR+  D+++  G+  + I    
Sbjct: 308 SSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTI---- 363

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               YN +I G  K ++   A  L  EM +K I PD  T+ +L+ G
Sbjct: 364 ---VYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAG 406



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G+ P++ TY + ++ +C    L+ A  +  ++ +   VP  VT N L+  +C +G  E
Sbjct: 740 SVGIVPNTVTYNTMINAVCNV-ILDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPE 798

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A  +  ++ +  +    +T+ L+       R + E   ++    EK +  D + Y I  
Sbjct: 799 KAIFWGQKLSEIHLDFDETTHKLMNRAY---RALEEGGVVINTSYEKSVFMDFLMY-ITY 854

Query: 123 NGYCR 127
           + +CR
Sbjct: 855 DYFCR 859


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 168/317 (52%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+   Y ++V G+CK G +++A  +LE+M   GL P   T+ +LIDG C  G 
Sbjct: 242 MVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGW 301

Query: 61  LEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            E AF    ++VK     P   TY ++I     E K+  A+ +L  M E+G+ P++ TY 
Sbjct: 302 TERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYT 361

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G+CR G+  +AF L ++M  +G  P + TY ++I    K+ ++ +A ++     ++
Sbjct: 362 TLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQ 421

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD V +  LI  HC  G+I  A  L  +M     HPD  TY T++   C+Q ++E++
Sbjct: 422 GLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQS 481

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           ++L D       K   I   PT+ TY ++I G C+  +   A ++   MV  G  PD  T
Sbjct: 482 QQLFD-------KCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPIT 534

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    +  E+
Sbjct: 535 YGALISGLCKESRLEEA 551



 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 159/297 (53%), Gaps = 9/297 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS   +P+ +TY   + G CKEG+L  A  +L +M E GL P   TY TLIDG+C  G+
Sbjct: 313 VKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGS 372

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + AF   ++M  +G +P   TYN +I     + K+ +A  +L+    +G+ PD +TY +
Sbjct: 373 FDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTM 432

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+ G+   A  L ++M      P + TYT++I +  +Q +M ++ QLF+  L+ G
Sbjct: 433 LITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIG 492

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + ++I G+C  G    A  + + M +    PD +TY  L+ G C++ ++EEAR
Sbjct: 493 LVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEAR 552

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYN---------ALIQGLCKNQEGDLAEELLREM 288
            L + M  + + P  ++       Y          + + GL K Q+   A+ L+R++
Sbjct: 553 ALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKRQQAHAADALVRKL 609



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 153/301 (50%), Gaps = 8/301 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+PD+ ++ + V G C+EGR EEA  +L  M   G    + T   ++  +C +G     
Sbjct: 176 GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDV 235

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 MV+ G  P    Y   +  L     + +A  +L+EM  KG+ P+  T+  LI+G
Sbjct: 236 PGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295

Query: 125 YCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            C+ G  ++AF L  +++     +P + TYT +I    K+ ++  A+ L    + +G+ P
Sbjct: 296 LCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 355

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +   +  LIDGHC  G+ +RAF L+ +M      P+  TYN ++ G C++GK+++A ++L
Sbjct: 356 NTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVL 415

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                +G+ PD       ++TY  LI   CK      A +L  +M      PD +TY ++
Sbjct: 416 RMATSQGLCPD-------KVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTI 468

Query: 304 I 304
           I
Sbjct: 469 I 469



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 154/313 (49%), Gaps = 8/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M  +G++P+ YT+ S + G+CK G  E A R+ L+ +K +   P   TY  +I GYC +G
Sbjct: 277 MVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEG 336

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A      MV+QG+ P  +TY  LI           A +++ +M  +G +P+  TYN
Sbjct: 337 KLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYN 396

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +I G+C+ G  ++A+ +      +G+ P  +TYT LI    KQ  +  A  LF      
Sbjct: 397 AIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAEN 456

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
              PDI  +  +I  +C    +E++  L  +   + + P + TY +++ G CR GK   A
Sbjct: 457 SCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSA 516

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            ++ ++M + G  PD I       TY ALI GLCK    + A  L   M+ K + P D T
Sbjct: 517 LKVFERMVQHGCLPDPI-------TYGALISGLCKESRLEEARALFETMLDKHMVPCDVT 569

Query: 300 YFSLIEGIASVDK 312
             +L       DK
Sbjct: 570 CVTLAYEYCRRDK 582



 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 144/310 (46%), Gaps = 33/310 (10%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLID-GYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83
           RL EA+ ML +++ +GL     T N ++  G   + +   A    D M   G+ P A ++
Sbjct: 128 RLREATDMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQAFDGM---GVRPDARSF 184

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
             L+     E +  EAD +L  M  +G   DS T  +++  +CR G  +    L   M+ 
Sbjct: 185 RALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVE 244

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G  P ++ YT+ +  L K+  + +A  + E  + KG+ P++    +LIDG C  G  ER
Sbjct: 245 MGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTER 304

Query: 204 AFSL-LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-------- 254
           AF L LK +      P+  TY  ++ G C++GK+  A  LL +M  +G+ P+        
Sbjct: 305 AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364

Query: 255 --HI------------------SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
             H                    F P   TYNA+I G CK  +   A ++LR   S+G+ 
Sbjct: 365 DGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLC 424

Query: 295 PDDNTYFSLI 304
           PD  TY  LI
Sbjct: 425 PDKVTYTMLI 434


>gi|255660958|gb|ACU25648.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 348

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/261 (36%), Positives = 148/261 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPT 261
            +  ++ R G++PD IS+N T
Sbjct: 325 VIWARILRNGLEPDIISYNIT 345



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P++ ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL++G C+     EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 101/194 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+ + Y + ++G+    + E+A R+  +M      PT +TYNTLI+G C    
Sbjct: 155 MIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEM 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A++   E++ +G+ P   TY++L+  L ++ K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A SL+ +M      P ++++ +L+    K   +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDG 194
           + PDI+ +N  + G
Sbjct: 335 LEPDIISYNITLKG 348



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L+ M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 162/313 (51%), Gaps = 8/313 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P+   Y +++ G+CK   +++A  +LE+M   GL P   T+ +LI+G C  G  E A
Sbjct: 250 GTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERA 309

Query: 65  FSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           F    +++K     P   TY ++I     E K+  A+ +L  M E+G+ P++ TY  LI+
Sbjct: 310 FRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIS 369

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C+ G+   AF L ++M  +G QP + TY +LI  L K+ ++ EA ++      +G+  
Sbjct: 370 GHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQL 429

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D V +  +I  HC  G+I  A  L   M     HPD  TY TL+   C+Q ++EE+++L 
Sbjct: 430 DKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLF 489

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           D       K   I   PT+ TY ++I G CK  +   A  +   MV  G   D  TY +L
Sbjct: 490 D-------KCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGAL 542

Query: 304 IEGIASVDKAAES 316
           I G+    +  E+
Sbjct: 543 ISGLCKESRLEEA 555



 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 160/314 (50%), Gaps = 7/314 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +KS   +P+ +TY   + G CKEG+L  A  +L +M E GL P   TY TLI G+C +G+
Sbjct: 317 IKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGS 376

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              AF   ++M ++G  P   TYN LI  L  + K+ EA  +L+    +G+  D +TY +
Sbjct: 377 FNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTV 436

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C+ G+   A  L + M   G  P + TYT+LI    +Q +M E+ +LF+  LA  
Sbjct: 437 MITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIE 496

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P    + ++I G+C  G    A  + + M +     D +TY  L+ G C++ ++EEAR
Sbjct: 497 LVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEAR 556

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L + M  + + P  ++  P  L +       C+ ++  +A  +L  +  +      N  
Sbjct: 557 ALYEGMLDKRLVPCEVT--PVTLAFE-----YCRREKAVVAVSILDRLDKRRKNHTVNVL 609

Query: 301 FSLIEGIASVDKAA 314
              +  I  V+ A+
Sbjct: 610 VRKLSAIGHVEDAS 623



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 150/301 (49%), Gaps = 8/301 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD+ ++ + + G C++GR+EE   +L  M+  G      T   ++  +C KG     
Sbjct: 180 GLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDV 239

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M++ G  P    Y   I  L     + +A  +L+EM  KG+ P+  T+  LING
Sbjct: 240 SELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLING 299

Query: 125 YCRCGNAKKAFSLHDEMIH-KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
            C+ G  ++AF L  ++I     +P + TYT +I    K+ ++  A+ L    + +G+ P
Sbjct: 300 LCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 359

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +   +  LI GHC  G+   AF L+ +M R    P+  TYN L+ G C++GK++EA ++L
Sbjct: 360 NTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVL 419

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                +G++ D       ++TY  +I   CK      A +L   M   G  PD +TY +L
Sbjct: 420 RMANNQGLQLD-------KVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTL 472

Query: 304 I 304
           I
Sbjct: 473 I 473



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 8/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM-LEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M ++G++P+ YT+ S ++G+CK G  E A R+ L+ +K +   P   TY  +I GYC +G
Sbjct: 281 MVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEG 340

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            L  A      MV+QG+ P  +TY  LI     E     A +++ +M  +G  P+  TYN
Sbjct: 341 KLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYN 400

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G C+ G  ++A+ +     ++G+Q   +TYT +I    KQ  +  A  LF      
Sbjct: 401 ALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAEN 460

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  PDI  +  LI  +C    +E +  L  +   +++ P + TY +++ G C+ GK   A
Sbjct: 461 GCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSA 520

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            R+ ++M + G + D I       TY ALI GLCK    + A  L   M+ K + P + T
Sbjct: 521 LRVFERMVQNGCQADSI-------TYGALISGLCKESRLEEARALYEGMLDKRLVPCEVT 573

Query: 300 YFSL 303
             +L
Sbjct: 574 PVTL 577



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 153/302 (50%), Gaps = 9/302 (2%)

Query: 17  VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG- 75
           V+   + GRL EA+ M+ +M+ +GL     T N ++    + G+   A    D MV +G 
Sbjct: 121 VAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTRGG 180

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           ++P A ++  LI     + +M E D +L  M  +G   D+ T  +++  +C+ G  +   
Sbjct: 181 LLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVS 240

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
            L   M+  G  P ++ YT+ I  L K+  + +A  + E  +AKG+ P++    +LI+G 
Sbjct: 241 ELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGL 300

Query: 196 CTNGNIERAFSL-LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
           C  G  ERAF L LK +      P+  TY  ++ G C++GK+  A  LL +M  +G+ P+
Sbjct: 301 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 360

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
                    TY  LI G CK    + A EL+ +M  +G  P+  TY +LI+G+    K  
Sbjct: 361 TN-------TYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQ 413

Query: 315 ES 316
           E+
Sbjct: 414 EA 415


>gi|302757523|ref|XP_002962185.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
 gi|300170844|gb|EFJ37445.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
          Length = 442

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 11/304 (3%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRG++P   TY SF+SG+CK GR+EEA +++ +M   G +  A   + +  GY  +G +E
Sbjct: 107 SRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREM---GKMCAAEVLHCIFGGYVLEGKIE 163

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A + +DEMVK+G+      Y  LIH L   R+  EA +M + M ++G VPD+ TY +++
Sbjct: 164 EALALKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYGMIV 223

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           + +C+ G  + A  + + M   G++     Y SL+      NR  EA  +++  L K ++
Sbjct: 224 SHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAINVYDTMLRKMVM 283

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           P IV +N L+ G C  G    A  +L+EM +R  + P  V+Y TL+HG  + G+ +EA  
Sbjct: 284 PSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAGRADEAID 343

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +  +M   G+ PD  S         +LIQ L      D A +LLR+M   GITPD   Y 
Sbjct: 344 VFTEMVDNGVVPDCPSC-------TSLIQALAMADRMDEATQLLRDMPRMGITPDALAYN 396

Query: 302 SLIE 305
           +L++
Sbjct: 397 ALVK 400



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 166/353 (47%), Gaps = 44/353 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +R   PD  T+   ++G+CK G+L  A  + ++M   G  P  + Y +L+DG      
Sbjct: 35  MVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASM 94

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A     E+V +G+ PT  TY   I  L    ++ EA  +++EMG+   +  +   + 
Sbjct: 95  MDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGK---MCAAEVLHC 151

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +  GY   G  ++A +L DEM+ KG+   +  YT+LI  L    R  EA ++FE  + +G
Sbjct: 152 IFGGYVLEGKIEEALALKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQG 211

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD---------------------------- 212
            +PD   +  ++   C  G ++ A  +++ MD                            
Sbjct: 212 YVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAI 271

Query: 213 -------RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                  R  V P  VTYN LM G C+ G+  +AR +L +M+ R    D I   PT ++Y
Sbjct: 272 NVYDTMLRKMVMPSIVTYNILMLGLCKLGQTADARLVLREMRER----DGIV--PTIVSY 325

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             LI GL K    D A ++  EMV  G+ PD  +  SLI+ +A  D+  E++ 
Sbjct: 326 RTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQ 378



 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 1/230 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD+ TYG  VS  CK+G+++ A +++E M   GL      YN+L+DG+     
Sbjct: 207 MVQQGYVPDTRTYGMIVSHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNR 266

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
              A +  D M+++ +MP+  TYN+L+  L    +  +A  +L+EM E+ GIVP  ++Y 
Sbjct: 267 AREAINVYDTMLRKMVMPSIVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYR 326

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G  + G A +A  +  EM+  G+ P   + TSLI  L+  +RM EA QL  +    
Sbjct: 327 TLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRM 386

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
           G+ PD + +NAL+   C    +  A+ +L EM      PD  T+  +  G
Sbjct: 387 GITPDALAYNALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGSTFRAMKLG 436



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 1/268 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV  D   Y + + G+    R +EA  M E M + G VP   TY  ++  +C +G 
Sbjct: 172 MVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYGMIVSHFCKQGK 231

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    + M   G+      YN L+   L   +  EA ++   M  K ++P  +TYNI
Sbjct: 232 MQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAINVYDTMLRKMVMPSIVTYNI 291

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           L+ G C+ G    A  +  EM  + GI PT+++Y +LI  L K  R  EA  +F   +  
Sbjct: 292 LMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAGRADEAIDVFTEMVDN 351

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++PD     +LI        ++ A  LL++M RM + PD + YN L+   C   KV  A
Sbjct: 352 GVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALAYNALVKVLCGGAKVGPA 411

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNA 267
             +L +M      PD  +F   +L + A
Sbjct: 412 WDVLVEMMDNSCVPDGSTFRAMKLGFKA 439



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 82  TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
            Y  +I+ L    +  +A    + M  +   PD  T+ ++I G C+ G   +A  +  EM
Sbjct: 11  AYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEM 70

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             KG +P ++ YTSL+  LSK + M EA +L +  +++GM P  V + + I G C NG +
Sbjct: 71  NRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGRV 130

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           E A  L++EM +M         + +  G   +GK+EEA  L D+M ++G+  D       
Sbjct: 131 EEAGKLVREMGKMCAAE---VLHCIFGGYVLEGKIEEALALKDEMVKKGVTLDV------ 181

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
              Y  LI GL   +  D A+E+   MV +G  PD  TY  ++
Sbjct: 182 -RCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYGMIV 223



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 10/273 (3%)

Query: 46  VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKE 105
           V Y  +I+        + A +  + MV +   P   T+ ++I  L    K+  A ++ +E
Sbjct: 10  VAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQE 69

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M  KG  PD I Y  L++G  +     +A  L  E++ +G++PT +TYTS I  L K  R
Sbjct: 70  MNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTSFISGLCKNGR 129

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           + EA +L       G +    + + +  G+   G IE A +L  EM +  V  D   Y  
Sbjct: 130 VEEAGKLVREM---GKMCAAEVLHCIFGGYVLEGKIEEALALKDEMVKKGVTLDVRCYTN 186

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           L+HG     + +EA+ + + M ++G  PD      TR TY  ++   CK  +   A +++
Sbjct: 187 LIHGLFYVRRNDEAQEMFEAMVQQGYVPD------TR-TYGMIVSHFCKQGKMQAACKVV 239

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
             M + G+  + + Y SL++G   V++A E+ N
Sbjct: 240 EIMDAAGLEANCHIYNSLMDGFLGVNRAREAIN 272



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 39/199 (19%)

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
           ++ YT++I  L K +R  +A   FE  +A+   PD+  F  +I G C  G + RA  + +
Sbjct: 9   VVAYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQ 68

Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           EM+R    PD + Y +L+ G  +   ++EAR+LL ++  RG+K       PT +TY + I
Sbjct: 69  EMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMK-------PTEVTYTSFI 121

Query: 270 QGLCKNQEGDLAEELLR--------------------------------EMVSKGITPDD 297
            GLCKN   + A +L+R                                EMV KG+T D 
Sbjct: 122 SGLCKNGRVEEAGKLVREMGKMCAAEVLHCIFGGYVLEGKIEEALALKDEMVKKGVTLDV 181

Query: 298 NTYFSLIEGIASVDKAAES 316
             Y +LI G+  V +  E+
Sbjct: 182 RCYTNLIHGLFYVRRNDEA 200


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 169/299 (56%), Gaps = 13/299 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P+     + +    +  RLE+A R LE+M+  G+VP  VTYN +I GYC+   
Sbjct: 271 MQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHR 330

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG-EKGIVPDSITYN 119
           +E A    D+M  +G +P   +Y  ++  L  E+++VE  D++K+M  E G+V D +TYN
Sbjct: 331 VEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYN 390

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+   +  +A +A     +   KG +   + Y++++  L K+ RM EA  L    L+K
Sbjct: 391 TLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSK 450

Query: 180 GML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           G   PD+V + A+++G C  G +++A  LL+ M      P+ V+Y  L++G CR GK  E
Sbjct: 451 GHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLE 510

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITP 295
           AR +++  + +        ++P  +TY+ L+ GL   +EG L+E  +++REMV KG  P
Sbjct: 511 AREMMNMSEEQW-------WSPNSITYSVLMHGL--RKEGKLSEACDVVREMVLKGFFP 560



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 10/314 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT-AVTYNTLIDGYCNKGNLE 62
           +G + D   Y + V  +CKEGR+ EA  ++ +M   G  P   VTY  +++G+C  G ++
Sbjct: 415 KGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVD 474

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      M   G  P   +Y  L++ L    K +EA +M+    E+   P+SITY++L+
Sbjct: 475 KAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLM 534

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G  + G   +A  +  EM+ KG  P  +    L+  L +  R  EA +  E  L KG  
Sbjct: 535 HGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCA 594

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
            ++V F  +I G C N  ++ A S+L +M  +  H D  TY TL+    ++G++ EA  L
Sbjct: 595 INVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATEL 654

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           + +M  +GI       +PT +TY  +I   C+ ++ D    +L +M+ +        Y  
Sbjct: 655 MKKMLHKGI-------DPTPVTYRTVIHRYCQMEKVDDLVAILEKMILRQKC--KTIYNQ 705

Query: 303 LIEGIASVDKAAES 316
           +IE +  + K  E+
Sbjct: 706 VIEKLCGLGKLEEA 719



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 159/320 (49%), Gaps = 9/320 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+      +   +    + G+L +A ++L  M+  G+ P  +  NT ID +     
Sbjct: 236 MKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANR 295

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A  F + M   GI+P   TYN +I       ++ EA ++L +M  KG +PD ++Y  
Sbjct: 296 LEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYT 355

Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ++   C+     +   L  +M  + G+    +TY +LI +L+K +   EA    ++   K
Sbjct: 356 IMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEK 415

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           G   D V ++A++   C  G +  A  L+ EM  +    PD VTY  +++G CR G+V++
Sbjct: 416 GFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDK 475

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A++LL  M   G KP+ +S       Y AL+ GLC+  +   A E++     +  +P+  
Sbjct: 476 AKKLLQIMHTHGYKPNTVS-------YTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSI 528

Query: 299 TYFSLIEGIASVDKAAESSN 318
           TY  L+ G+    K +E+ +
Sbjct: 529 TYSVLMHGLRKEGKLSEACD 548



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 155/307 (50%), Gaps = 10/307 (3%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M S+G   PD  TY + V+G C+ G +++A ++L+ M  +G  P  V+Y  L++G C  G
Sbjct: 447 MLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTG 506

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
               A    +   +Q   P + TY++L+H L  E K+ EA D+++EM  KG  P  +  N
Sbjct: 507 KSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEIN 566

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +L+   CR G   +A    +E ++KG    ++ +T++I    + + +  A  + ++    
Sbjct: 567 LLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLI 626

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
               D+  +  L+D     G I  A  L+K+M    + P  VTY T++H  C+  KV++ 
Sbjct: 627 NKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDL 686

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             +L++M  R            +  YN +I+ LC   + + A++LL +++      D  T
Sbjct: 687 VAILEKMILR---------QKCKTIYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKT 737

Query: 300 YFSLIEG 306
            ++L+EG
Sbjct: 738 CYALMEG 744



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 7/309 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D   Y S +  + K    + A R+L  MK  G+  T   +  ++  Y   G L  A    
Sbjct: 209 DPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVL 268

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             M + G+ P     N  I   +   ++ +A   L+ M   GIVP+ +TYN +I GYC  
Sbjct: 269 TLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDL 328

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK-GMLPDIVM 187
              ++A  L D+M  KG  P  ++Y +++  L K+ R++E   L +    + G++ D V 
Sbjct: 329 HRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVT 388

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N LI     + + + A   LK+ +      D+V Y+ ++H  C++G++ EA+ L+++M 
Sbjct: 389 YNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEML 448

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            +G  P      P  +TY A++ G C+  E D A++LL+ M + G  P+  +Y +L+ G+
Sbjct: 449 SKGHCP------PDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGL 502

Query: 308 ASVDKAAES 316
               K+ E+
Sbjct: 503 CRTGKSLEA 511



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 11/238 (4%)

Query: 83  YNLLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
           Y++L  E+L + KM + A  +L  M  +GI      +  ++  Y R G  + A  +   M
Sbjct: 214 YSML--EVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLM 271

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
              G++P +L   + I V  + NR+ +A +  E     G++P++V +N +I G+C    +
Sbjct: 272 QRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRV 331

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM-KRRGIKPDHISFNP 260
           E A  LL +M      PD+V+Y T+M   C++ ++ E R L+ +M K  G+  D +    
Sbjct: 332 EEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQV---- 387

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              TYN LI  L K+   D A   L++   KG   D   Y +++  +    + +E+ +
Sbjct: 388 ---TYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKD 442



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 2/142 (1%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
             D +TY + V  + K+GR+ EA+ ++++M   G+ PT VTY T+I  YC    ++   +
Sbjct: 629 HADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVA 688

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             ++M+ +      + YN +I +L    K+ EAD +L ++       D+ T   L+ GY 
Sbjct: 689 ILEKMILR--QKCKTIYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKTCYALMEGYL 746

Query: 127 RCGNAKKAFSLHDEMIHKGIQP 148
           + G    A+ +   M ++ + P
Sbjct: 747 KIGVPLLAYKVACRMFNRNLIP 768


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 161/295 (54%), Gaps = 7/295 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CKEG +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   T+++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +   L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+  Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P+  T
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 171/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +I+      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H    E ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L   M   G+QP + T++ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + ++M    + PD +TYNTL++G C++G +++ 
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQX 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 XDLIDEMSMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 135/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YT+   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +  D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+     YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P+ VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 169/318 (53%), Gaps = 9/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK   + PD  +Y + ++G+CK  RL EA  + ++MK     P +VT++ LIDG+C  G+
Sbjct: 155 MKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGD 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E  F   +EM K G+      Y+ LI     +  +    ++  EM  K + P+ +TY+ 
Sbjct: 215 VEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSC 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+N  C+    K+A  + D M    ++P ++ YT L   LSK  R  +A ++ +  + +G
Sbjct: 275 LMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V +NA+I+G C  G ++ A  +L+ M +    PD VTY+TL+ G C  GK++EA 
Sbjct: 335 EEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAV 394

Query: 241 RLLDQM--KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
            LL+ +  K   IKPD  +F       N +IQ LCK +    A+ +   MV +G   +  
Sbjct: 395 DLLNLLMSKEFHIKPDVFAF-------NLVIQELCKQRRLRHAKRVYYTMVERGFPSNIV 447

Query: 299 TYFSLIEGIASVDKAAES 316
           TY  LI+G  S  K  ++
Sbjct: 448 TYNILIDGYLSAGKLTKA 465



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 155/295 (52%), Gaps = 9/295 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG   + Y +   + G C+ G   +A  +   MK N L+P  V+YNT+I+G C    L  
Sbjct: 123 RGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVE 182

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     EM      P + T++ LI        + E   +L+EM + G+  D   Y+ LI+
Sbjct: 183 AKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALIS 242

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G+ ++   L +EM+ K + P ++TY+ L+  L K+ +  EA Q+ +      + P
Sbjct: 243 GFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRP 302

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V +  L DG   NG    A  +L  M +    P+ VTYN +++G C++G+V++A  +L
Sbjct: 303 DVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGIL 362

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK--GITPD 296
           + M ++G KPD +       TY+ L++GLC   + D A +LL  ++SK   I PD
Sbjct: 363 ETMAKKGKKPDVV-------TYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPD 410



 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 159/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S  V P   +  + +       +   A  +L  + + G       +N L+ G+C  G+
Sbjct: 85  MASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGD 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M +  ++P   +YN +I+ L   +++VEA ++ KEM      P+S+T++ 
Sbjct: 145 SHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSA 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+ G+ ++ F L +EM   G++  +  Y++LI     +  +    +LF   L K 
Sbjct: 205 LIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKN 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++V ++ L++  C     + A  +L  M   KV PD V Y  L  G  + G+  +A 
Sbjct: 265 VTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAI 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++LD M +RG +P+++       TYNA+I GLCK    D A  +L  M  KG  PD  TY
Sbjct: 325 KVLDLMVKRGEEPNNV-------TYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTY 377

Query: 301 FSLIEGIASVDKAAES 316
            +L++G+  V K  E+
Sbjct: 378 STLVKGLCGVGKIDEA 393



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 154/338 (45%), Gaps = 44/338 (13%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+PD   Y     G+ K GR  +A ++L+ M + G  P  VTYN +I+G C +G ++ A 
Sbjct: 300 VRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDAL 359

Query: 66  SFRDEMVKQGIMPTASTY-------------------------------------NLLIH 88
              + M K+G  P   TY                                     NL+I 
Sbjct: 360 GILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQ 419

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
           EL  +R++  A  +   M E+G   + +TYNILI+GY   G   KA  L  + +  GI P
Sbjct: 420 ELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISP 479

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
              TYT LI  L K   +  A  LF    A G  P +  +N L+   C   ++E+A +L 
Sbjct: 480 NAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLF 539

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           +EM      PD V++N ++ G  + G VE A+ LL +M    + PD+I       T++ L
Sbjct: 540 QEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNI-------TFSIL 592

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           I    K  + D A  L   MVS G  PD   + SL++G
Sbjct: 593 INRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKG 630



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 144/275 (52%), Gaps = 7/275 (2%)

Query: 42  VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101
           +P+  + NTLID      + +   S   +M    + P  ++ + LI   +  +K   A  
Sbjct: 56  IPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFG 115

Query: 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161
           +L  + ++G   +   +N+L+ G+C+ G++ KA  L   M    + P  ++Y ++I  L 
Sbjct: 116 VLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLC 175

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K  R++EA +LF+        P+ V F+ALIDG C NG++E  F LL+EM++M +  D  
Sbjct: 176 KGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVF 235

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
            Y+ L+ G C +G +E  + L ++M R+ + P+ +       TY+ L+  LCK Q+   A
Sbjct: 236 VYSALISGFCSKGDIERGKELFNEMLRKNVTPNVV-------TYSCLMNALCKKQKWKEA 288

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            ++L  M    + PD   Y  L +G++   +A+++
Sbjct: 289 AQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDA 323



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 173/349 (49%), Gaps = 44/349 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +P++ TY + ++G+CKEGR+++A  +LE M + G  P  VTY+TL+ G C  G 
Sbjct: 330 MVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGK 389

Query: 61  LEMA------------------FSFR-------------------DEMVKQGIMPTASTY 83
           ++ A                  F+F                      MV++G      TY
Sbjct: 390 IDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTY 449

Query: 84  NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
           N+LI   L   K+ +A ++ K+  + GI P++ TY +LING C+      A  L ++   
Sbjct: 450 NILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRA 509

Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G +PT+  Y +L+  L +++ + +A  LF+        PD+V FN +IDG    G++E 
Sbjct: 510 SGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVES 569

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
           A  LL EM  M + PD +T++ L++   + G+++EA  L ++M   G  PD + F     
Sbjct: 570 AKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLF----- 624

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
             ++L++G     + +    +L++M  K +  D     +++  + ++ K
Sbjct: 625 --DSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSK 671



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 126/248 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG   +  TY   + G    G+L +A  + +   ++G+ P A TY  LI+G C    
Sbjct: 437 MVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQM 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A    ++    G  PT S YN L+  L  E  + +A ++ +EM      PD +++NI
Sbjct: 497 LSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNI 556

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G  + G+ + A  L  EM++  + P  +T++ LI    K  ++ EA  L+E  ++ G
Sbjct: 557 IIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCG 616

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD V+F++L+ G+   G  E+  S+L++M    V  D    +T++   C   K  +  
Sbjct: 617 HVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIE 676

Query: 241 RLLDQMKR 248
           ++L +  +
Sbjct: 677 KILPKFSQ 684



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+ T+   ++   K G+L+EA+ + E+M   G VP AV +++L+ GY  KG  E   S 
Sbjct: 584 PDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSM 643

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
             +M  + ++  +   + ++  L    K V+ + +L +  +   V  SI  N L+
Sbjct: 644 LQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKILPKFSQHTSVGASIKCNELL 698


>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 567

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 165/335 (49%), Gaps = 27/335 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G+ PD+ +Y   V+ +CK G +  A +++E+M+++G     VTYNTL+ G C  GN
Sbjct: 123 MISCGIIPDAASYTFLVNHLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGN 182

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  +  F D ++++G++P A TY+ L+     ER + EA  +L E+  KG  P+ ++YN+
Sbjct: 183 LNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNV 242

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C+ G  ++A  L   +  KG  P +++Y  L+  L  + R  EA++L      + 
Sbjct: 243 LLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRE 302

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P IV +N LI     +G IE+A  ++ EM      P   +YN ++   C++GKVE   
Sbjct: 303 RSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVV 362

Query: 241 RLLDQMKRRGIKPDHISFNPTRLT---------------------------YNALIQGLC 273
             LDQM      P+  +FN   +                            Y  ++  LC
Sbjct: 363 NCLDQMIFGRCSPNEGTFNAIAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLC 422

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           K      A  LL EM   G TPD  TY SLI G+ 
Sbjct: 423 KKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLC 457



 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 158/296 (53%), Gaps = 7/296 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +PD       +  +CK  ++++A R++E M   G++P A +Y  L++  C +GN+  A
Sbjct: 92  GHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVGYA 151

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               ++M   G      TYN L+  L M   + ++   L  + +KG+VP++ TY+ L+  
Sbjct: 152 MQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEA 211

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +     +A  L DE+I KG QP +++Y  L+  L K+ R+ EA +LF+N  +KG  P+
Sbjct: 212 AYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPN 271

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N L+   C  G  E A  LL EM+  +  P  VTYN L+      GK+E+A +++D
Sbjct: 272 VVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVID 331

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +M    + P    F PT  +YN +I  LCK  + +     L +M+    +P++ T+
Sbjct: 332 EMM---MGP----FKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTF 380



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 8/305 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G QP+  +Y   ++G+CKEGR+EEA R+ + +   G  P  V+YN L+   C +G  E
Sbjct: 230 AKGGQPNLVSYNVLLTGLCKEGRIEEAIRLFKNLPSKGFSPNVVSYNILLRSLCYEGRWE 289

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM  +   P+  TYN+LI  L    K+ +A  ++ EM      P + +YN +I
Sbjct: 290 EANELLAEMNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPII 349

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
              C+ G  +   +  D+MI     P   T+ + I VL  + ++ EA  L ++   K   
Sbjct: 350 ARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNA-IAVLCYEGKVQEAFSLIQSLGNKQNS 408

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
                +  ++   C  GN   AF LL EM +    PD  TY++L+ G C +G + EA  +
Sbjct: 409 SIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEI 468

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
              ++    +PD  +FN       ALI G CK+   DL+ E+   M+ KG TP + TY  
Sbjct: 469 FKLLEEDHYRPDIDNFN-------ALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTI 521

Query: 303 LIEGI 307
           L+EGI
Sbjct: 522 LVEGI 526



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G  P+  +Y   +  +C EGR EEA+ +L +M      P+ VTYN LI      G 
Sbjct: 263 LPSKGFSPNVVSYNILLRSLCYEGRWEEANELLAEMNGRERSPSIVTYNILIGSLAFHGK 322

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    DEM+     PTA++YN +I  L  E K+    + L +M      P+  T+N 
Sbjct: 323 IEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVNCLDQMIFGRCSPNEGTFNA 382

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I   C  G  ++AFSL   + +K        Y  ++  L K+     A  L       G
Sbjct: 383 -IAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLCKKGNTYPAFLLLYEMTKYG 441

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD   +++LI G C  G +  A  + K ++     PD   +N L+ G C+  + + + 
Sbjct: 442 FTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTDLSL 501

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
            + + M  +G       + P+  TY  L++G+   +E +LA E+LRE+
Sbjct: 502 EVFEMMIEKG-------YTPSETTYTILVEGIIHEEEKELAAEVLREL 542



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 101/183 (55%), Gaps = 7/183 (3%)

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           AF   + ++  G +P ++  T L++ L K N+M +A ++ E  ++ G++PD   +  L++
Sbjct: 81  AFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVN 140

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C  GN+  A  L+++M+      + VTYNTL+ G C  G + ++ + LD++ ++G+ P
Sbjct: 141 HLCKRGNVGYAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVP 200

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           +         TY++L++   K +  + A  LL E+++KG  P+  +Y  L+ G+    + 
Sbjct: 201 N-------AFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRI 253

Query: 314 AES 316
            E+
Sbjct: 254 EEA 256



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 36/251 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   P   TY   +  +   G++E+A +++++M      PTA +YN +I   C +G 
Sbjct: 298 MNGRERSPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGK 357

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----------- 109
           +E   +  D+M+     P   T+N  I  L  E K+ EA  +++ +G K           
Sbjct: 358 VEAVVNCLDQMIFGRCSPNEGTFNA-IAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKG 416

Query: 110 ------------------------GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                   G  PDS TY+ LI G C  G   +A  +   +    
Sbjct: 417 VVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDH 476

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +P +  + +LI    K +R   + ++FE  + KG  P    +  L++G       E A 
Sbjct: 477 YRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAA 536

Query: 206 SLLKEMDRMKV 216
            +L+E+   +V
Sbjct: 537 EVLRELHLRQV 547



 Score = 77.0 bits (188), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 2/175 (1%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P+  T+ + ++ +C EG+++EA  +++ +           Y  ++   C KGN   AF  
Sbjct: 375 PNEGTFNA-IAVLCYEGKVQEAFSLIQSLGNKQNSSIHDYYKGVVSCLCKKGNTYPAFLL 433

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             EM K G  P + TY+ LI  L +E  + EA ++ K + E    PD   +N LI G+C+
Sbjct: 434 LYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCK 493

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-FVLSKQNRMIEADQLFENFLAKGM 181
                 +  + + MI KG  P+  TYT L+  ++ ++ + + A+ L E  L + M
Sbjct: 494 SHRTDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLRELHLRQVM 548



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 64/115 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PDSYTY S + G+C EG L EA  + + ++E+   P    +N LI G+C    
Sbjct: 437 MTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHR 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
            +++    + M+++G  P+ +TY +L+  ++ E +   A ++L+E+  + ++  S
Sbjct: 497 TDLSLEVFEMMIEKGYTPSETTYTILVEGIIHEEEKELAAEVLRELHLRQVMSQS 551



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 7/142 (4%)

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
           R+ +A    E+ +  G  PD+V    L+   C +  +++A  +++ M    + PD  +Y 
Sbjct: 77  RISDAFFHLEHIVKNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYT 136

Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
            L++  C++G V  A +L+++M+  G       +    +TYN L++GLC +   + + + 
Sbjct: 137 FLVNHLCKRGNVGYAMQLVEKMEDSG-------YPANTVTYNTLVKGLCMHGNLNKSLQF 189

Query: 285 LREMVSKGITPDDNTYFSLIEG 306
           L  ++ KG+ P+  TY SL+E 
Sbjct: 190 LDRLMQKGLVPNAFTYSSLLEA 211


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 158/315 (50%), Gaps = 15/315 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK+ G QPD ++Y   +SG CK  ++E AS M  +M + GL P  VTY  LI GYC    
Sbjct: 496 MKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEK 555

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M + G  P   TYN+LIH L  +     A+++ K M E+ I PD +TY+ 
Sbjct: 556 LDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYST 615

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C  G    A  + ++M+  G  P + TY+SLI  L ++ R+ EA+++F     +G
Sbjct: 616 VINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQG 675

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ------- 233
           ++PD V +  +I+    +G ++RAF  L EM      P   TY+ L+ G   +       
Sbjct: 676 LIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLV 735

Query: 234 --GKVEEARRLLDQMKRRGI------KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
                       DQ+  + +      K   + F  +R  Y+AL+  L ++     A  L 
Sbjct: 736 ALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLY 795

Query: 286 REMVSKGITPDDNTY 300
           R MVS+   P+ +TY
Sbjct: 796 RSMVSQSQCPNQDTY 810



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 173/340 (50%), Gaps = 39/340 (11%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+QP+   Y S ++ +CK+G + +A  ++ ++ ++G+ P   TY ++I GYC   +L+ A
Sbjct: 223 GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSA 282

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F   + M ++G  P A+TY+ LI+ L    ++ EA D + EM   G++P   T+   I  
Sbjct: 283 FEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVA 342

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-------FVLSKQNRM----------- 166
            C  G  + A+ +  +M  KG +P + TYTSLI         +   +RM           
Sbjct: 343 LCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVT 402

Query: 167 -------------IEADQLFENFLAK-GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
                        I++  +  N + K G LP+   +N LI G+CT G+ E+A S+L  M 
Sbjct: 403 YNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNML 462

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
           + +  P  VTYN ++ G C  G  + A R+L+ MK  G +PD  S       Y  LI G 
Sbjct: 463 KGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWS-------YTELISGF 515

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           CK  + +LA  +  EM+ +G+ P++ TY +LI G    +K
Sbjct: 516 CKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEK 555



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 160/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P++ +Y   + G C  G  E+A  ML  M +    PT VTYN +I GYC+ G+
Sbjct: 426 MGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGD 485

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            ++A    + M   G  P   +Y  LI       KM  A  M  EM ++G+ P+ +TY  
Sbjct: 486 TDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTA 545

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYC+      A  + + M   G +P + TY  LI  L+KQN    A++L +  L + 
Sbjct: 546 LISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEK 605

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+V ++ +I+G C NG I  A  +  +M +    P+  TY++L+    ++G+VEEA 
Sbjct: 606 ISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAE 665

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  ++K++G+ PD +       TY  +I+    + + D A + L EM++ G  P   TY
Sbjct: 666 EMFSELKKQGLIPDEV-------TYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTY 718

Query: 301 FSLIEGI 307
             LI+G+
Sbjct: 719 DVLIKGL 725



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 156/320 (48%), Gaps = 18/320 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM----LEQMKENGLVPTAVTYNTLIDGYC 56
           MK +G +P+ YTY S +SG       +  SRM      +M  +G+VP  VTYN L++   
Sbjct: 359 MKKKGCKPNVYTYTSLISG-------QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLM 411

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
               ++ A    + M K G +P  S+YN LI          +A  ML  M +    P  +
Sbjct: 412 ENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLV 471

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TYNI+I GYC  G+   A  + + M   G QP   +YT LI    K ++M  A  +F   
Sbjct: 472 TYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEM 531

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
           + +G+ P+ V + ALI G+C +  ++ A  +L+ M R    P+  TYN L+HG  +Q   
Sbjct: 532 MDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNF 591

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
             A  L   M    I PD +       TY+ +I GLC N    LA E+  +MV  G  P+
Sbjct: 592 SGAEELCKVMLEEKISPDVV-------TYSTVINGLCNNGAIPLALEMFNKMVKHGCLPN 644

Query: 297 DNTYFSLIEGIASVDKAAES 316
            +TY SLI+ +    +  E+
Sbjct: 645 LHTYSSLIQALGQEGRVEEA 664



 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 164/341 (48%), Gaps = 39/341 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P++ TY + ++G+C  GR+ EA   + +M  +G++PT  T+   I   C+ G 
Sbjct: 289 MDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGR 348

Query: 61  LE--------------------------------MAFSFRDEMVKQGIMPTASTYNLLIH 88
           +E                                MA      M + G++P   TYN L++
Sbjct: 349 IEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMN 408

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            L+   ++  A  +   MG+ G +P++ +YN LI GYC  G+ +KA S+   M+     P
Sbjct: 409 VLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTP 468

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T++TY  +I           A ++ E   A G  PD   +  LI G C    +E A  + 
Sbjct: 469 TLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMF 528

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
            EM    + P+EVTY  L+ G C+  K++ A R+L++MKR G +P+         TYN L
Sbjct: 529 NEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPN-------VQTYNVL 581

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           I GL K      AEEL + M+ + I+PD  TY ++I G+ +
Sbjct: 582 IHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCN 622



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 154/338 (45%), Gaps = 33/338 (9%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG +   +TY + +  + K            Q+   GL P  + YN++I+  C  GN+  
Sbjct: 187 RGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRD 246

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A S  +++ K G+ P   TY  +I      R +  A ++   M E+G  P++ TY+ LIN
Sbjct: 247 AESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLIN 306

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C  G   +A     EM   G+ PT+ T+T+ I  L    R+ +A ++F +   KG  P
Sbjct: 307 GLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKP 366

Query: 184 DIVMFNALIDGHCTNGNIER-AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           ++  + +LI G      + R A  L   M R  V P+ VTYN LM+      +++ A  +
Sbjct: 367 NVYTYTSLISGQ----RVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIV 422

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            + M + G  P+  S+N                            PT +TYN +I+G C 
Sbjct: 423 FNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCD 482

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           + + D+A  +L  M + G  PD+ +Y  LI G   + K
Sbjct: 483 SGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISK 520



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 137/307 (44%), Gaps = 27/307 (8%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A R+LE       V  A  +  +I    NK  +  A ++ D   ++G      TY  L+ 
Sbjct: 144 AMRLLESRDRPAAVGRARIH--MIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLI 201

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
           +L          D   ++  +G+ P+ + YN +IN  C+ GN + A S+ +++   G++P
Sbjct: 202 QLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKP 261

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
              TYTS+I    +   +  A ++F     +G  P+   ++ LI+G C +G +  A   +
Sbjct: 262 DTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFI 321

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------- 259
            EM R  V P   T+   +   C  G++E+A ++   MK++G KP+  ++          
Sbjct: 322 SEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVS 381

Query: 260 ----------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
                           P  +TYNAL+  L +N E D A  +   M   G  P+ ++Y  L
Sbjct: 382 RMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNEL 441

Query: 304 IEGIASV 310
           I G  ++
Sbjct: 442 IRGYCTI 448



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           +A +  D    +G +  + TYT+L+  L+K N        +   L +G+ P+++++N++I
Sbjct: 176 QALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVI 235

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           +  C +GN+  A S++ ++ +  + PD  TY +++ G CR   ++ A  + ++M   G +
Sbjct: 236 NALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCE 295

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           P+         TY+ LI GLC +   + A + + EM   G+ P  +T+ + I  +  + +
Sbjct: 296 PNAA-------TYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGR 348

Query: 313 AAES 316
             ++
Sbjct: 349 IEDA 352



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 109/275 (39%), Gaps = 57/275 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  P+ +TY S +  + +EGR+EEA  M  ++K+ GL+P  VTY  +I+     G 
Sbjct: 636 MVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGK 695

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLL---------------------------------- 86
           ++ AF F  EM+  G  PT  TY++L                                  
Sbjct: 696 VDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDV 755

Query: 87  ------------------IHELLMER-----KMVEADDMLKEMGEKGIVPDSITYNILIN 123
                             +++ L+ R     +  EA+++ + M  +   P+  TY   + 
Sbjct: 756 ISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLI 815

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
              R      A  +   M  +  +  +  Y  LI  L + +R  EA  +FE  L++ +  
Sbjct: 816 SLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNA 875

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
           D +++  LI+G    G  +     L  M+  + +P
Sbjct: 876 DEIVWTILINGLLGAGYKDLCMEFLHIMETNRRNP 910


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++  M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A      M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 160/309 (51%), Gaps = 7/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M     QPD YTY + + G+CK  R++EA  +L++M+ +G  P+ VT+N LI+G C KG+
Sbjct: 195 MPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGD 254

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       D M  +G  P   TYN LIH L ++ K+ +A  +L  M     VP+ +TY  
Sbjct: 255 LARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGT 314

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING  + G A     +   M  +G       Y++LI  L K+ +  EA QLF+    K 
Sbjct: 315 IINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKE 374

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              + ++++A+IDG C +G  + A  +L EM   +  P+  TY++LM G    G   +A 
Sbjct: 375 CELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAI 434

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M +        +F    + Y+ LI GLCK+ +   A  +  +M+ KG  PD   Y
Sbjct: 435 EMWKDMAKH-------NFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAY 487

Query: 301 FSLIEGIAS 309
            S+I G+++
Sbjct: 488 GSMINGLSN 496



 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 156/326 (47%), Gaps = 30/326 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P   T+   ++G+CK+G L   +++++ M   G  P  VTYNTLI G C KG 
Sbjct: 230 MQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGK 289

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A S  D MV    +P   TY  +I+ L+ + + ++   +L  M E+G   +   Y+ 
Sbjct: 290 LEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSA 349

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G  + G +++A  L  EM  K  +   + Y+++I  L +  +  EA ++        
Sbjct: 350 LISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNR 409

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+   +++L+ G    GN  +A  + K+M +     +EV Y+ L+HG C+ GKV+EA 
Sbjct: 410 CKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAM 469

Query: 241 RLLDQMKRRGIKPDHISF------------------------------NPTRLTYNALIQ 270
            +  QM  +G KPD +++                               P  +TYN L+ 
Sbjct: 470 MVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLN 529

Query: 271 GLCKNQEGDLAEELLREMVSKGITPD 296
            LCK      A +LL  M+ +G  PD
Sbjct: 530 ALCKQSSISRAIDLLNSMLDRGCDPD 555



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 135/312 (43%), Gaps = 52/312 (16%)

Query: 47  TYNTLIDGYCNKGNL-----------------------------------EMAFSFRDEM 71
           T+ +LID Y N G+                                    E A    D M
Sbjct: 62  TFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRM 121

Query: 72  V-----KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITYNILING 124
                 K+ +    S  N++I E L  R +   + ++   G KG  I P+ +T+N++I  
Sbjct: 122 AYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVI---GAKGVNISPNVLTFNLVIKT 178

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G    A  +  +M     QP + TY +L+  L K +R+ EA  L +     G  P 
Sbjct: 179 MCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPS 238

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V FN LI+G C  G++ R   L+  M      P+EVTYNTL+HG C +GK+E+A  LLD
Sbjct: 239 PVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLD 298

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M      P+ +       TY  +I GL K         +L  M  +G   ++  Y +LI
Sbjct: 299 RMVSSKCVPNVV-------TYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALI 351

Query: 305 EGIASVDKAAES 316
            G+    K+ E+
Sbjct: 352 SGLFKEGKSQEA 363



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 31/237 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +   +P++YTY S + G  + G   +A  M + M ++      V Y+ LI G C  G 
Sbjct: 405 MTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGK 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHEL----LMERKMVEADDMLKEMGEKGIVPDSI 116
           ++ A     +M+ +G  P    Y  +I+ L    L+E  +   ++ML +  E    PD +
Sbjct: 465 VKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQ--EPDSQPDVV 522

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT---------------------YTS 155
           TYNIL+N  C+  +  +A  L + M+ +G  P ++T                        
Sbjct: 523 TYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPPQDGREFLDG 582

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC----TNGNIERAFSLL 208
           L+  L K+ R++ A ++ E  L K + P    +  +++  C        I++ +S+L
Sbjct: 583 LVVRLLKRQRVLGASKIVEVMLQKLLPPKPSTWTRVVEDLCNPKKVQAAIQKCWSIL 639


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 170/312 (54%), Gaps = 8/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + ++G   D ++YGS ++G+CK G+  +A ++L++M+E+ + P  +TY+T+IDG C    
Sbjct: 151 LMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRL 210

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      +  +GI+     YN LIH      +  EA  +L  M    I PD  T+NI
Sbjct: 211 IADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNI 270

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++  C+ G   +A  +   M+ +G +P ++TY +L+      N + EA +LF   + +G
Sbjct: 271 LVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRG 330

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD++ +N LI+G+C    ++ A  L KE+    + P+  TYN+L+ G C+ G++   +
Sbjct: 331 LEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQ 390

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+D+M  RG  PD +       TYN  +   CK++  + A  L R++V +GI PD   Y
Sbjct: 391 ELVDEMCDRGQSPDIV-------TYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMY 442

Query: 301 FSLIEGIASVDK 312
             ++E     +K
Sbjct: 443 DVIVENFCKGEK 454



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 159/309 (51%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P  + +   +  + + G    A  +  Q+   G+ P+  T   LI+ YC++ +L  AFS 
Sbjct: 53  PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSL 112

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K G  P   T+N LI+   +   + +A     ++  KG   D  +Y  LING C+
Sbjct: 113 LGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCK 172

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A  L  +M    ++P ++TY+++I  L K   + +A +LF    ++G+L D+V 
Sbjct: 173 NGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVA 232

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI G C+ G    A  LL  M R  ++PD+ T+N L+   C++G++ EA+ +   M 
Sbjct: 233 YNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMM 292

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +RG KPD +       TYNAL++G C +     A EL   MV +G+ PD   Y  LI G 
Sbjct: 293 KRGEKPDIV-------TYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGY 345

Query: 308 ASVDKAAES 316
             +D   E+
Sbjct: 346 CKIDMVDEA 354



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 161/335 (48%), Gaps = 42/335 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S+G+ P   T    ++  C +  L  A  +L  + + G  P  VT+NTLI+G+C  G 
Sbjct: 81  LHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGM 140

Query: 61  LEMAFSFRDEMVKQG-----------------------------------IMPTASTYNL 85
           +  A +FR +++ +G                                   + P   TY+ 
Sbjct: 141 VSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYST 200

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +I  L  +R + +A  +   +  +GI+ D + YN LI+G C  G  ++A  L   M+   
Sbjct: 201 VIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGN 260

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P   T+  L+  L K+ R++EA  +F   + +G  PDIV +NAL++G C + N+  A 
Sbjct: 261 INPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEAR 320

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L   M +  + PD + YN L++G C+   V+EA  L  +++ + + P+         TY
Sbjct: 321 ELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPN-------LATY 373

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           N+LI GLCK       +EL+ EM  +G +PD  TY
Sbjct: 374 NSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTY 408



 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 151/307 (49%), Gaps = 8/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + SRG+  D   Y S + G C  G+  EA+R+L  M    + P   T+N L+D  C +G 
Sbjct: 221 VTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGR 280

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M+K+G  P   TYN L+    +   + EA ++   M ++G+ PD + YN+
Sbjct: 281 IVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNV 340

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+     +A  L  E+  K + P + TY SLI  L K  RM    +L +    +G
Sbjct: 341 LINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRG 400

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDIV +N  +D  C +   E+A SL +++ +  + PD   Y+ ++   C+  K++ A 
Sbjct: 401 QSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAE 459

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
             L  +   G  P+       R TY  +I  LCK+   D A  LL +M      PD  T+
Sbjct: 460 EALQHLLIHGCCPN------VR-TYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTF 512

Query: 301 FSLIEGI 307
            ++I  +
Sbjct: 513 ETIIGAL 519



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 148/298 (49%), Gaps = 9/298 (3%)

Query: 1   MKSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M  RG + PD YT+   V  +CKEGR+ EA  +   M + G  P  VTYN L++G+C   
Sbjct: 255 MMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSN 314

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N+  A    + MVK+G+ P    YN+LI+       + EA  + KE+  K +VP+  TYN
Sbjct: 315 NVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYN 374

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+G C+ G       L DEM  +G  P ++TY   +    K     +A  LF   + +
Sbjct: 375 SLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQ-IVQ 433

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD  M++ +++  C    ++ A   L+ +      P+  TY  +++  C+    +EA
Sbjct: 434 GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEA 493

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
             LL +M      PD +       T+  +I  L +  E D AE+L  EM+ +G+  D+
Sbjct: 494 MTLLSKMDDNDCPPDAV-------TFETIIGALQERNETDKAEKLRLEMIERGLVNDE 544



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 114/228 (50%), Gaps = 14/228 (6%)

Query: 95  KMVEADDML---KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
           K    DD L     M  K   P    ++ L+    R G+   A SL  ++  KGI P++ 
Sbjct: 32  KFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIA 91

Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
           T T LI     Q  +  A  L    L  G  P++V FN LI+G C NG + +A +    +
Sbjct: 92  TLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAF--RL 149

Query: 212 DRM-KVHP-DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
           D M K +P DE +Y +L++G C+ G+  +A +LL +M+   ++P+ I       TY+ +I
Sbjct: 150 DLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLI-------TYSTVI 202

Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
            GLCK++    A  L   + S+GI  D   Y SLI G  SV +  E++
Sbjct: 203 DGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREAT 250


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 167/342 (48%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++GV PD++TY + + G    G+ +EA R+ ++M+   ++P  V  NTL+   C  G 
Sbjct: 282 MVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGK 341

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M  +G  P   +Y ++++    +  +V+  D+   M   GI P   T+N+
Sbjct: 342 IKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNV 401

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y  CG   KA  + +EM   G++P ++TY ++I  L +  +M +A + F   + +G
Sbjct: 402 LIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQG 461

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE--------------------------MDRM 214
           ++PD   ++ LI G CT+G++ +A  L+ E                          MD  
Sbjct: 462 VVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQ 521

Query: 215 KV---------HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +         HPD V YN LM G C  GK+E+A R+ D M   GI+P+ +        Y
Sbjct: 522 NIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG-------Y 574

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             L+ G CK    D    L REM+ KGI P    Y  +I+G+
Sbjct: 575 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 163/307 (53%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD ++Y   ++G   +G L + + + + M  +G+ P   T+N LI  Y N G 
Sbjct: 352 MAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGM 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM   G+ P   TY  +I  L    KM +A +   +M ++G+VPD   Y+ 
Sbjct: 412 LDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  E+++ G++  ++ + S+I  L K  R+++A  +F+  +  G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V++N L+DG+C  G +E+A  +   M    + P+ V Y TL++G C+ G+++E  
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M ++GIKP  I        YN +I GL +      A+    EM   GI  +  TY
Sbjct: 592 SLFREMLQKGIKPSTI-------LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 644

Query: 301 FSLIEGI 307
             ++ G+
Sbjct: 645 SIVLRGL 651



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 158/340 (46%), Gaps = 31/340 (9%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R + P SYTY   +    +  R E A     Q+   GL   A+  + L+ G+C     + 
Sbjct: 107 RVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDE 166

Query: 64  AFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNI 120
           A         + G +P   +YN+L+  L  + K  +ADD+L+ M E G V  PD + YN 
Sbjct: 167 ALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNT 226

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+ + G+  KA  L  EM+ +GI P ++TY+S++  L K   M +A+      + KG
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +LPD   +N LI G+ + G  + A  + KEM R  + PD V  NTLM   C+ GK++EAR
Sbjct: 287 VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEAR 346

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            + D M  +G  PD  S+                             P   T+N LI+  
Sbjct: 347 DVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAY 406

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
                 D A  +  EM   G+ P   TY ++I  +  + K
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGK 446



 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 162/312 (51%), Gaps = 7/312 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD   Y + + G  KEG + +A  + ++M + G+ P  VTY++++   C    ++ A +
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           F  +MV +G++P   TYN LI+      +  EA  + KEM  + I+PD +  N L+   C
Sbjct: 278 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLC 337

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G  K+A  + D M  KG  P + +YT ++   + +  +++   LF+  L  G+ P I 
Sbjct: 338 KYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVIC 397

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN LI  +   G +++A  +  EM    V P  VTY T++   CR GK+++A    +QM
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQM 457

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             +G+ PD       +  Y+ LIQG C +     A+EL+ E+++ G+  D   + S+I  
Sbjct: 458 IDQGVVPD-------KYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINN 510

Query: 307 IASVDKAAESSN 318
           +  + +  ++ N
Sbjct: 511 LCKLGRVMDAQN 522



 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 42/331 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P   TY + ++ +C+ G++++A     QM + G+VP    Y+ LI G+C  G+
Sbjct: 422 MRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGS 481

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     E++  G+      +  +I+ L    ++++A ++       G+ PD++ YN+
Sbjct: 482 LLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNM 541

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  +KA  + D M+  GI+P ++ Y +L+    K  R+ E   LF   L KG
Sbjct: 542 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKG 601

Query: 181 MLPDIVMFNALIDG-------------------------HCT----------NGNIERAF 205
           + P  +++N +IDG                          CT          N   + A 
Sbjct: 602 IKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAI 661

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L KE+  M V  D +T NT++ G  +  +VEEA+ L   + R G+        P  +TY
Sbjct: 662 FLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLV-------PCAVTY 714

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           + +I  L K    + AE++   M + G  PD
Sbjct: 715 SIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 745



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 114/243 (46%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   YG+ V+G CK GR++E   +  +M + G+ P+ + YN +IDG    G 
Sbjct: 562 MVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 621

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM + GI     TY++++  L   R   EA  + KE+    +  D IT N 
Sbjct: 622 TVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNT 681

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  +    ++A  L   +   G+ P  +TY+ +I  L K+  + EA+ +F +    G
Sbjct: 682 MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 741

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD  + N ++        I RA + L ++D      + +T   L+     +G   E  
Sbjct: 742 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQI 801

Query: 241 RLL 243
           R L
Sbjct: 802 RFL 804



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 21/232 (9%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILINGYCR------CGNAKK-AFSLHDEMIHKG----- 145
           EA D+L E+  +G        N  +    R      CG+    A +L +    +      
Sbjct: 49  EAHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRV 108

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + PT  TY  L+   ++ +R   A   F   L  G+  D ++ + L+ G C     + A 
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 206 S-LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             LL     +   PD  +YN L+   C QGK  +A  LL  M   G        +P  + 
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGT-----VCSPDVVA 223

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
           YN +I G  K  + + A +L +EMV +GI PD  TY S++  +    ++DKA
Sbjct: 224 YNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKA 275


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 161/307 (52%), Gaps = 9/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
           G  PD ++Y   +  +C +G+  +A  +L  M E G V  P  V YNT+IDG+  +G++ 
Sbjct: 143 GCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 202

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EMV++GI P   TYN ++H L   R M +A+  L++M  K ++P++ TYN LI
Sbjct: 203 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLI 262

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            GY   G  K+A  +  EM    I P ++T + L+  L K  ++ EA  +F+    KG  
Sbjct: 263 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 322

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +N +++G+ T G +     L   M    + PD  T+N  +      G +++A  +
Sbjct: 323 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMII 382

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++M+  G+KPD +       TY  +I  LC+  + D A E   +M+ +G+ PD   Y  
Sbjct: 383 FNEMRDHGVKPDVV-------TYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 435

Query: 303 LIEGIAS 309
           LI+G  +
Sbjct: 436 LIQGFCT 442



 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 110/234 (47%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY S V  +CK   +++A   L QM    ++P   TYN LI GY + G 
Sbjct: 211 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 270

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A     EM +  I+P   T ++L+  L    K+ EA D+   M  KG  PD  +YNI
Sbjct: 271 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 330

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++NGY   G       L D M+  GI P   T+   I   +    + +A  +F      G
Sbjct: 331 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHG 390

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           + PD+V +  +I   C  G ++ A     +M    V PD+  YN L+ G C  G
Sbjct: 391 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 444



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 142/338 (42%), Gaps = 66/338 (19%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           L PT+ TY  L+D        E+A +F  ++++ G+   A   + L+      ++  EA 
Sbjct: 73  LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 132

Query: 100 DDMLKEMGEKGIVPDSITYNIL-------------------------------------I 122
           D +L    E G VPD  +YNIL                                     I
Sbjct: 133 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVI 192

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + G+  KA  L  EM+ +GI P ++TY S++  L K   M +A+      + K +L
Sbjct: 193 DGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVL 252

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+   +N LI G+ + G  + A  + KEM R  + PD VT + LM   C+ GK++EAR +
Sbjct: 253 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 312

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D M  +G  PD  S+N                            P   T+N  I+    
Sbjct: 313 FDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYAN 372

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               D A  +  EM   G+ PD  TY ++I  +  + K
Sbjct: 373 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 410



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 10/216 (4%)

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           +  G + + P S TY IL++   R    + A +   +++  G++   +  + L+    + 
Sbjct: 66  RAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEA 125

Query: 164 NRMIEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR--MKVHPDE 220
            R  EA D L       G +PD+  +N L+   C  G   +A +LL+ M        PD 
Sbjct: 126 KRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDV 185

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
           V YNT++ G  ++G V +A  L  +M +RGI PD +       TYN+++  LCK +  D 
Sbjct: 186 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV-------TYNSVVHALCKARAMDK 238

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           AE  LR+MV+K + P++ TY +LI G +S  +  E+
Sbjct: 239 AEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 274



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 20/273 (7%)

Query: 56  CNKG-NLEMAFSFRDEMVKQG---IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI 111
           C  G  L +A   R     QG   + PT+ TY +L+       +   A     ++   G+
Sbjct: 49  CGSGPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGL 108

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK----GIQPTMLTYTSLIFVLSKQNRMI 167
             D+I  + L+ G+C    AK+     D ++H+    G  P + +Y  L+  L  Q +  
Sbjct: 109 RVDAIIASHLLKGFCE---AKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSG 165

Query: 168 EADQLFENFLAKGML--PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
           +AD L       G +  PD+V +N +IDG    G++ +A  L KEM +  + PD VTYN+
Sbjct: 166 QADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNS 225

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           ++H  C+   +++A   L QM  + + P++        TYN LI G     +   A  + 
Sbjct: 226 VVHALCKARAMDKAEAFLRQMVNKRVLPNN-------WTYNNLIYGYSSTGQWKEAVRVF 278

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           +EM    I PD  T   L+  +    K  E+ +
Sbjct: 279 KEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 311



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TY + ++ +C+ G++++A     QM + G+ P    YN LI G+C  G 
Sbjct: 386 MRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGI 445

Query: 61  L 61
           L
Sbjct: 446 L 446


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 167/313 (53%), Gaps = 9/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  P +  Y S V+G+CK GR++EA + +++M+   L P   TY+ ++ GY   G 
Sbjct: 259 MVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGK 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF+  +EM  +   P   +Y + I  L    +  EA+ + + M EKG  PD  TY I
Sbjct: 319 VEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGI 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G+   A  +   M    ++P    YT ++    K +R+ EA +L++  L  G
Sbjct: 379 IIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDG 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK--VHPDEVTYNTLMHGRCRQGKVEE 238
           +LP  V +N +I+  C    ++ A  LL+EM R K  + P  VTY+ ++HG  + G  E 
Sbjct: 439 ILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEER 498

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  LL +M   G+ PD         TY +LIQ L    +   A ELL EM+  GI PDD+
Sbjct: 499 AFDLLAEMIDNGVIPDC-------FTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDH 551

Query: 299 TYFSLIEGIASVD 311
           TY +L++ +   D
Sbjct: 552 TYGTLVQILCRSD 564



 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 167/340 (49%), Gaps = 30/340 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P  +TY   V G+CK  ++E A  + E+M   G  P  + Y++LIDG    G ++ A  
Sbjct: 195 EPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARK 254

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D MV +G  PTA  Y  ++  L    ++ EA   ++EM  + + P   TY+ ++ GY 
Sbjct: 255 LVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYI 314

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G  +KAF++ +EM  +   P  ++YT  I  L    R  EA+++FE  + KG  PD+ 
Sbjct: 315 GMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMH 374

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  +ID  C  G++  A  +L+ MD+  V P+   Y  +M G  +  ++EEA  L  ++
Sbjct: 375 TYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRI 434

Query: 247 KRRGIKPDHISFN------------------------------PTRLTYNALIQGLCKNQ 276
            + GI P  +++N                              P+ +TY+ +I GL K  
Sbjct: 435 LKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVG 494

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             + A +LL EM+  G+ PD  TY SLI+ +A   K + +
Sbjct: 495 MEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRA 534



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 125/231 (54%), Gaps = 3/231 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +PD +TYG  +   CKEG +  A+ +L  M +  + P    Y  ++DG+     
Sbjct: 364 MVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSR 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITY 118
           LE A      ++K GI+P+  TYN +I+ L   +KM EA ++L+EM  +   + P  +TY
Sbjct: 424 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 483

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +++I+G  + G  ++AF L  EMI  G+ P   TYTSLI  L+   ++  A +L E  L 
Sbjct: 484 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLK 543

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            G+ PD   +  L+   C   +++ A+ LL+EM R    P+E T+  +  G
Sbjct: 544 AGIFPDDHTYGTLVQILC-RSDVDAAWDLLQEMMRNGHTPNEFTFKAVEKG 593



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 3/261 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   PD+ +Y  F+  +   GR EEA ++ E M E G  P   TY  +ID +C +G+
Sbjct: 329 MADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGS 388

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M K  + P    Y +++   +   ++ EA ++ + + + GI+P ++TYN 
Sbjct: 389 MAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNT 448

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +IN  C+     +A  L  EM  +   ++P+++TY+ +I  L K      A  L    + 
Sbjct: 449 VINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMID 508

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G++PD   + +LI      G + RA  LL+EM +  + PD+ TY TL+   CR   V+ 
Sbjct: 509 NGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS-DVDA 567

Query: 239 ARRLLDQMKRRGIKPDHISFN 259
           A  LL +M R G  P+  +F 
Sbjct: 568 AWDLLQEMMRNGHTPNEFTFK 588



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 156/338 (46%), Gaps = 28/338 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  ++   + G       E  + +L +MK  G+     T+  ++   C + +L+ A S
Sbjct: 125 EPNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVS 184

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           + + +      PT  TY +L+  L    K+  A D+ +EM  KG  PD I Y+ LI+G  
Sbjct: 185 YFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLS 244

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A  L D M+ +G  PT + YTS++  L K  R+ EA +  +    + + P + 
Sbjct: 245 KAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVD 304

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            ++ ++ G+   G +E+AF++++EM      PD ++Y   +      G+ EEA ++ + M
Sbjct: 305 TYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETM 364

Query: 247 KRRGIKPD---------------------HI-------SFNPTRLTYNALIQGLCKNQEG 278
             +G KPD                     H+       +  P R  Y  ++ G  K+   
Sbjct: 365 VEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRL 424

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + A EL + ++  GI P   TY ++I  +  + K  E+
Sbjct: 425 EEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEA 462



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 147/295 (49%), Gaps = 10/295 (3%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           +T  S +  + + G L +A    +        P   ++N L+ G+  + + E+  +   E
Sbjct: 97  FTRNSLLLALVRGGHLSDALGFFQSSISE---PNVSSFNILLRGFAARDDFEVVNALLRE 153

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           M  +GI    +T+ +++  L   R + +A      +      P   TY +L++G C+   
Sbjct: 154 MKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHK 213

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
            ++A  + +EMI KG +P ++ Y+SLI  LSK  R+ EA +L +  +A+G  P  V + +
Sbjct: 214 VERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTS 273

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           ++ G C  G I+ A   ++EM R ++ P   TY+ ++ G    GKVE+A  ++++M  R 
Sbjct: 274 IVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRD 333

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
             PD IS       Y   I+ L      + AE++   MV KG  PD +TY  +I+
Sbjct: 334 CAPDTIS-------YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIID 381



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           ++P   TY   + G+ K G  E A  +L +M +NG++P   TY +LI      G +  A 
Sbjct: 476 LEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAM 535

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              +EM+K GI P   TY  L+ ++L    +  A D+L+EM   G  P+  T+  +  G+
Sbjct: 536 ELLEEMLKAGIFPDDHTYGTLV-QILCRSDVDAAWDLLQEMMRNGHTPNEFTFKAVEKGF 594


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 169/342 (49%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++GV PD++TY + + G    G+ +EA R+ ++M+ + ++P  VT N L+   C  G 
Sbjct: 284 MVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGK 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M  +G  P   +Y ++++    +  +V+  D+   M   GI PD  T+++
Sbjct: 344 IKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSV 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y  CG   KA  + +EM   G++P ++TYT++I  L +  +M +A + F   + +G
Sbjct: 404 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQG 463

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE--------------------------MDRM 214
           + PD   ++ LI G CT+G++ +A  L+ E                          MD  
Sbjct: 464 VAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQ 523

Query: 215 KV---------HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +         HPD V Y+ LM G C  GK+E+A R+ D M   GI+P+ +        Y
Sbjct: 524 NIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVV-------VY 576

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             L+ G CK    D    L REM+ KGI P    Y  +I+G+
Sbjct: 577 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 618



 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 159/307 (51%), Gaps = 9/307 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
           G  PD ++Y   +  +C +G+  +A  +L  M E G V  P  V Y T+ID +  +G++ 
Sbjct: 181 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVN 240

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EMV++GI P   TY+ ++H L   R M +A+  L++M  KG++PD+ TYN LI
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLI 300

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
            GY   G  K+A  +  EM    I P ++T   L+  L K  ++ EA  +F+    KG  
Sbjct: 301 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQN 360

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +  +++G+ T G +     L   M    + PD  T++ L+      G +++A  +
Sbjct: 361 PDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMII 420

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            ++M+  G+KPD +       TY  +I  LC+  + D A E   +M+ +G+ PD   Y  
Sbjct: 421 FNEMRDHGVKPDVV-------TYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 303 LIEGIAS 309
           LI+G  +
Sbjct: 474 LIQGFCT 480



 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 176/346 (50%), Gaps = 28/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD ++Y   ++G   +G L + + + + M  +G+ P   T++ LI  Y N G 
Sbjct: 354 MAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGM 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM   G+ P   TY  +I  L    KM +A +   +M ++G+ PD   Y+ 
Sbjct: 414 LDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  E+++ G++  ++ ++S+I  L K  R+++A  +F+  +  G
Sbjct: 474 LIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVG 533

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V+++ L+DG+C  G +E+A  +   M    + P+ V Y TL++G C+ G+++E  
Sbjct: 534 QHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGL 593

Query: 241 RLLDQMKRRGIKPDHISFN-------------PTRL---------------TYNALIQGL 272
            L  +M ++GIKP  I +N             P ++               TYN +++G 
Sbjct: 594 SLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGF 653

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            KN+  D A  L +E+ +  +  D  T  ++I G+    +  E+ +
Sbjct: 654 FKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 699



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 149/295 (50%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+PD  TY + ++ +C+ G++++A     QM + G+ P    Y+ LI G+C  G+
Sbjct: 424 MRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGS 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     E++  G+      ++ +I+ L    ++++A ++       G  PD++ Y++
Sbjct: 484 LLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSM 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GYC  G  +KA  + D M+  GI+P ++ Y +L+    K  R+ E   LF   L KG
Sbjct: 544 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKG 603

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  +++N +IDG    G    A     EM    +  ++ TYN ++ G  +    +EA 
Sbjct: 604 IKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAI 663

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            L  +++   +K D I       T N +I G+ + +  + A++L   +   G+ P
Sbjct: 664 FLFKELRAMNVKIDII-------TLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 141/338 (41%), Gaps = 66/338 (19%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           L PT+ TY  L+D        E+A +F  ++++ G+       N L+      ++  EA 
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 100 DDMLKEMGEKGIVPDSITYNILINGYC--------------------------------- 126
           D +L    E G VPD  +Y+IL+   C                                 
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230

Query: 127 ----RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
               + G+  KA  L  EM+ +GI P ++TY+S++  L K   M +A+      + KG+L
Sbjct: 231 DCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVL 290

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD   +N LI G+ + G  + A  + KEM R  + PD VT N LM   C+ GK++EAR +
Sbjct: 291 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDV 350

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D M  +G  PD  S+                             P   T++ LI+    
Sbjct: 351 FDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYAN 410

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               D A  +  EM   G+ PD  TY ++I  +  + K
Sbjct: 411 CGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGK 448



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 96/182 (52%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD+  Y   + G C  G++E+A R+ + M   G+ P  V Y TL++GYC  G ++  
Sbjct: 533 GQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEG 592

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM+++GI P+   YN++I  L +  + V A     EM E GI  +  TYNI++ G
Sbjct: 593 LSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRG 652

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + +     +A  L  E+    ++  ++T  ++I  + +  R+ EA  LF +    G++P 
Sbjct: 653 FFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 712

Query: 185 IV 186
           +V
Sbjct: 713 VV 714



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 100/218 (45%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++ D   + S ++ +CK GR+ +A  + +     G  P AV Y+ L+DGYC  G +E A
Sbjct: 498 GMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKA 557

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D MV  GI P    Y  L++      ++ E   + +EM +KGI P +I YNI+I+G
Sbjct: 558 LRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 617

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
               G    A     EM   GI     TY  ++    K     EA  LF+   A  +  D
Sbjct: 618 LFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKID 677

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           I+  N +I G      +E A  L   + R  + P  VT
Sbjct: 678 IITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   YG+ V+G CK GR++E   +  +M + G+ P+ + YN +IDG    G 
Sbjct: 564 MVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGR 623

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM + GI     TYN+++      R   EA  + KE+    +  D IT N 
Sbjct: 624 TVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNT 683

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
           +I G  +    ++A  L   +   G+ P ++T
Sbjct: 684 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715


>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
          Length = 800

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D+Y+    V G+C EGR+EE  +++E     G +P  V YN LIDGYC +G++       
Sbjct: 413 DNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLL 472

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
            EM  +G +PT  TY  LI+ L  +  + +   +  EM ++G+ P+   YN +I+  C+C
Sbjct: 473 GEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKC 532

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
            +A +A  +  +M   G  P ++T+ +LI  L  +  + +A+      + + + P+ + +
Sbjct: 533 WSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSY 592

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
             LI G C  G +  A  LL EM      PD VT+  L+HG    GKV EA  + ++M  
Sbjct: 593 TPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE 652

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           R + PD    N     YN LI GLCK      A+ +L EM+ K + PD+  Y +LI+G
Sbjct: 653 RQVFPD---VN----IYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDG 703



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 151/285 (52%), Gaps = 9/285 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+++G  P   TYGS ++ + K+G LE+   +  +M++ GL P    YN++ID  C   +
Sbjct: 475 MEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWS 534

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M   G  P   T+N LI  L  E  + +A+  L+E   + + P+ ++Y  
Sbjct: 535 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTP 594

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C  G    A  L  EM+ +G  P ++T+ +LI  L    ++ EA  + E    + 
Sbjct: 595 LIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQ 654

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD+ ++N LI G C    +  A ++L+EM    V PDE  Y TL+ G  R   + +AR
Sbjct: 655 VFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDAR 714

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           ++ + M+ +G++PD +S        NA+I+G C  Q G ++E +L
Sbjct: 715 KIFEFMEHKGVRPDIVSC-------NAMIKGYC--QFGMMSEAIL 750



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 132/249 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ P+   Y S +  +CK     +A  +L+QM  +G  P  +T+NTLI G C++G+
Sbjct: 510 MRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGH 569

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  F  E +++ + P   +Y  LIH   M  +++ A D+L EM  +G  PD +T+  
Sbjct: 570 VRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGA 629

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G    G   +A  + ++M  + + P +  Y  LI  L K++ +  A  + E  L K 
Sbjct: 630 LIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKN 689

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD  ++  LIDG   + N+  A  + + M+   V PD V+ N ++ G C+ G + EA 
Sbjct: 690 VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAI 749

Query: 241 RLLDQMKRR 249
             +  M+++
Sbjct: 750 LCMSNMRKQ 758



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 143/345 (41%), Gaps = 64/345 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           M   G  P     G+ V+     G L +A+ M E+++E  G +P     N L+     + 
Sbjct: 334 MSLAGAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQR 393

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             + A    DEM+ +       +  +L+  L +E ++ E   +++     G +P  + YN
Sbjct: 394 RWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYN 453

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +LI+GYCR G+  +   L  EM                                    AK
Sbjct: 454 VLIDGYCRRGDMGRGLLLLGEM-----------------------------------EAK 478

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G LP +V + +LI+     G++E+  SL  EM +  + P+   YN+++   C+     +A
Sbjct: 479 GFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQA 538

Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
             +L QM   G  PD I+F                            NP +L+Y  LI G
Sbjct: 539 MVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHG 598

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            C   E   A +LL EM+ +G TPD  T+ +LI G+    K +E+
Sbjct: 599 FCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEA 643



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 43/171 (25%)

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT------- 222
           D   ++    G  P      AL+  +   G + +A  + + +        EVT       
Sbjct: 328 DDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLK 387

Query: 223 ---------------------------YNT--LMHGRCRQGKVEEARRLLDQMKRRGIKP 253
                                      Y+T  L+ G C +G+VEE  +L++     G  P
Sbjct: 388 LLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIP 447

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            H+ F      YN LI G C+  +      LL EM +KG  P   TY SLI
Sbjct: 448 -HVVF------YNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLI 491


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 168/361 (46%), Gaps = 65/361 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R  +PD YTY + + G+CK  R++EA  +L++M+ +G  P+ VT+N LI+G C KG+
Sbjct: 225 MTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGD 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    D M  +G +P   TYN LIH L ++ K+ +A  +L  M     VP+ +TY  
Sbjct: 285 LSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGT 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING  + G A     +   M  +G       Y++LI  L K+ +  EA  LF+    KG
Sbjct: 345 IINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKG 404

Query: 181 MLPDIVMFNALIDGHCTN-----------------------------------GNIERAF 205
              + ++++A+IDG C +                                   GN  RA 
Sbjct: 405 YELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAV 464

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
            + K+M +     +EV Y+ L+HG C+ GKV+EA  +  QM  +G KPD ++++      
Sbjct: 465 EVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGL 524

Query: 260 ------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
                                   P  +TYN L+  LCK      A +LL  M+ +G  P
Sbjct: 525 SIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDP 584

Query: 296 D 296
           D
Sbjct: 585 D 585



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 156/335 (46%), Gaps = 28/335 (8%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
           K   + P+  T+   +  MCK G +++A ++   M      P   TY TL+DG C    +
Sbjct: 191 KGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRI 250

Query: 62  EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
           + A S  DEM   G  P+  T+N+LI+ L  +  +  A  ++  M  KG +P+ +TYN L
Sbjct: 251 DEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTL 310

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I+G C  G  +KA SL D M+     P ++TY ++I  L KQ R ++   +      +G 
Sbjct: 311 IHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGY 370

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
             +  +++ LI G    G  + A  L KEM       + + Y+ ++ G CR GK ++A  
Sbjct: 371 CVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVE 430

Query: 242 LLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGLC 273
           +L +M  +G  P+  +                            F    + Y+ LI GLC
Sbjct: 431 VLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLC 490

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           K+ +   A  +  +M+ KG  PD   Y S+I G++
Sbjct: 491 KDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLS 525



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 165/399 (41%), Gaps = 86/399 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G  P   T+   ++G+CK+G L  A+++++ M   G +P  VTYNTLI G C KG 
Sbjct: 260 MQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGK 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTY-----------------------------------NL 85
           LE A S  D MV    +P   TY                                   + 
Sbjct: 320 LEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYST 379

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L  E K  EA  + KEM  KG   ++I Y+ +I+G CR G    A  +  EM +KG
Sbjct: 380 LISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKG 439

Query: 146 IQPTMLT-----------------------------------YTSLIFVLSKQNRMIEAD 170
             P   T                                   Y+ LI  L K  ++ EA 
Sbjct: 440 CTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAM 499

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DRMKVHPDEVTYNTLMH 228
            ++   L KG  PD+V ++++I+G    G +E A  L  EM        PD VTYN L++
Sbjct: 500 MVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLN 559

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHIS-----------FNPT---RLTYNALIQGLCK 274
             C+Q  +  A  LL+ M  RG  PD ++            +P    R   + L+  L K
Sbjct: 560 TLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDPPQDGREFLDELVVRLLK 619

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
            Q    A +++  M+ K + P  +T+  ++E +    K 
Sbjct: 620 RQRVLGASKIVEVMLQKLLPPKHSTWARVVENLCKPKKV 658



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 27/235 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G  P++YT  S + G  + G    A  + + M ++      V Y+ LI G C  G 
Sbjct: 435 MTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGK 494

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI--VPDSITY 118
           ++ A     +M+ +G  P    Y+ +I+ L +   + +A  +  EM  +G    PD +TY
Sbjct: 495 VKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTY 554

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT---------------------SLI 157
           NIL+N  C+  +  +A  L + M+ +G  P ++T T                      L+
Sbjct: 555 NILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDPPQDGREFLDELV 614

Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC----TNGNIERAFSLL 208
             L K+ R++ A ++ E  L K + P    +  +++  C        I++ +S+L
Sbjct: 615 VRLLKRQRVLGASKIVEVMLQKLLPPKHSTWARVVENLCKPKKVQAVIQKCWSIL 669


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 170/315 (53%), Gaps = 8/315 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD ++Y + + G  KEG +++A  +  +M+E G++P  VTY++LI+G C    ++ A
Sbjct: 219 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 278

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +MV  G+ P   TYN LIH         E+  + KEM    +VPD    N  +  
Sbjct: 279 ERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTA 338

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  K+A  + D M+ KG +P +++Y +L+   +    +   D LF   + +G++PD
Sbjct: 339 LCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPD 398

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             +FN LI+ +   G ++++  + ++M +  V+PD +T++T++   CR G++++A    +
Sbjct: 399 RHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN 458

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF-SL 303
            M   G+ PD          Y+ LIQG C  ++   A+EL+ +M+SKGI P    +F S+
Sbjct: 459 HMIDTGVPPD-------TAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSI 511

Query: 304 IEGIASVDKAAESSN 318
           I  +    + AE  +
Sbjct: 512 INNLCKEGRVAEGKD 526



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 162/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +PD  +YG+ + G    G +     +   M   G+VP    +NTLI+ Y   G 
Sbjct: 355 MVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGM 414

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ +    ++M KQG+ P   T++ +I       ++ +A +    M + G+ PD+  Y+ 
Sbjct: 415 MDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSC 474

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY-TSLIFVLSKQNRMIEADQLFENFLAK 179
           LI G C   +  KA  L  +M+ KGI P  + + TS+I  L K+ R+ E   + +  +  
Sbjct: 475 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 534

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+++ FN+L+DG+C  GN++ A  LL  M+ + V PD  TYNTL+ G C+ G++++A
Sbjct: 535 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA 594

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L   M        H     T ++YN ++ GL + +   +A+E+  EM+  G+    +T
Sbjct: 595 LTLFRDML-------HKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHT 647

Query: 300 YFSLIEGI 307
           Y +++ G+
Sbjct: 648 YATVLGGL 655



 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 166/342 (48%), Gaps = 43/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M+ +G+ P+  TY S ++G+CK   +++A R+L QM   G+ P  +TYN LI GY     
Sbjct: 250 MEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGM 309

Query: 56  ------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                         C  G ++ A    D MV +G  P   +Y  
Sbjct: 310 WKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGA 369

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+H       +   D++   M  +G+VPD   +N LIN Y R G   K+  + ++M  +G
Sbjct: 370 LLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG 429

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++T++++I    +  R+ +A + F + +  G+ PD  +++ LI G C   ++ +A 
Sbjct: 430 VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAK 489

Query: 206 SLLKEMDRMKVHPDEVTYNT-LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            L+ +M    + P  + + T +++  C++G+V E + ++D +   G +P+ I       T
Sbjct: 490 ELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLI-------T 542

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +N+L+ G C       A  LL  M S G+ PD  TY +L++G
Sbjct: 543 FNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDG 584



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 169/382 (44%), Gaps = 64/382 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD + + + ++   + G ++++  M E M + G+ P  +T++T+I  +C  G 
Sbjct: 390 MVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGR 449

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-N 119
           L+ A    + M+  G+ P  + Y+ LI      R +V+A +++ +M  KGI P  I +  
Sbjct: 450 LDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 509

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +IN  C+ G   +   + D +IH G +P ++T+ SL+        M EA  L ++  + 
Sbjct: 510 SIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV 569

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR--------- 230
           G+ PDI  +N L+DG+C +G I+ A +L ++M   +V    V+YN ++HG          
Sbjct: 570 GVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVA 629

Query: 231 --------------------------CRQGKVEEARRLLDQMKRRGIKPDHISFN----- 259
                                     CR    +EA  LL+++    +K D ++FN     
Sbjct: 630 KEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRA 689

Query: 260 -----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                  PT LTY  +I  L K +  + A+ L   M     TPD
Sbjct: 690 MFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPD 749

Query: 297 DNTYFSLIEGIASVDKAAESSN 318
                 +I  + +  + A++ N
Sbjct: 750 SRILNEIIRMLLNKGEVAKAGN 771



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 130/250 (52%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+  T+ S V G C  G ++EA  +L+ M+  G+ P   TYNTL+DGYC  G ++ A
Sbjct: 535 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA 594

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   +M+ + +  T+ +YN+++H L   R+ + A +M  EM E G+     TY  ++ G
Sbjct: 595 LTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGG 654

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A  L +++    ++  +LT+  +I  + K  R  EA +LF      G++P 
Sbjct: 655 LCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPT 714

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ +  +I       + E A +L   M++    PD    N ++     +G+V +A   L 
Sbjct: 715 ILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLS 774

Query: 245 QMKRRGIKPD 254
           ++ ++GI P+
Sbjct: 775 KIDKKGILPE 784



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 8/305 (2%)

Query: 1   MKSRGVQPDSYTY-GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M S+G+ P    +  S ++ +CKEGR+ E   +++ +   G  P  +T+N+L+DGYC  G
Sbjct: 495 MLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVG 554

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N++ A    D M   G+ P   TYN L+       ++ +A  + ++M  K +   S++YN
Sbjct: 555 NMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYN 614

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+++G  +      A  +  EMI  G+  ++ TY +++  L + N   EA+ L E   + 
Sbjct: 615 IILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSM 674

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            +  DI+ FN +I      G  + A  L   +    + P  +TY  ++    ++   E+A
Sbjct: 675 NVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDA 734

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L   M++    PD      +R+  N +I+ L    E   A   L ++  KGI P+  T
Sbjct: 735 DNLFSSMEKSSCTPD------SRI-LNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATT 787

Query: 300 YFSLI 304
              LI
Sbjct: 788 TSLLI 792



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+PD YTY + V G CK GR+++A  +   M    +  T+V+YN ++ G      
Sbjct: 566 MESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARR 625

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A     EM++ G+  +  TY  ++  L       EA+ +L+++    +  D +T+NI
Sbjct: 626 TIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNI 685

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    + G  ++A  L   +   G+ PT+LTY  +I  L K+    +AD LF +     
Sbjct: 686 VIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSS 745

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD  + N +I      G + +A + L ++D+  + P+  T + L++     GK  E  
Sbjct: 746 CTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYI 805

Query: 241 RLLDQMKR 248
           +LL +  R
Sbjct: 806 KLLPEKYR 813


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 165/304 (54%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QP++ T  + + G+C EG+++EA R  +++   G   + ++Y  LI+G C  G    A
Sbjct: 123 GYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAA 182

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 + +  I P    Y+++I  L  +  + EA D+  EM  KGI PD +TY+IL++G
Sbjct: 183 IRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSG 242

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C  G   +A  L +EM+ + I P + TYT L+  L K+ ++ EA+ +    +   +  D
Sbjct: 243 FCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLD 302

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V+++ L+DG+C    +  A  +   M +M V PD   Y+ +++G C+  +V+EA  L +
Sbjct: 303 VVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFE 362

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           ++ ++ + PD +       TY +LI  LCK+       +L  EM+ +G  PD  TY +LI
Sbjct: 363 EIHQKNMVPDTV-------TYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLI 415

Query: 305 EGIA 308
           + + 
Sbjct: 416 DALC 419



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 160/311 (51%), Gaps = 13/311 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   ++P+   Y   +  +CK+  ++EA  +  +M   G+ P  VTY+ L+ G+C  G 
Sbjct: 189 IERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQ 248

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    +EMV + I P   TY +L+  L  E K+ EA+++L  M +  +  D + Y+ 
Sbjct: 249 LNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYST 308

Query: 121 LINGYC---RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           L++GYC      NAK+ F    +M   G+ P +  Y+ +I  L K  R+ EA  LFE   
Sbjct: 309 LMDGYCLVNEVNNAKRVFYTMTQM---GVTPDVHCYSIMINGLCKIKRVDEALNLFEEIH 365

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            K M+PD V + +LID  C +G I   + L  EM      PD +TYN L+   C+ G ++
Sbjct: 366 QKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLD 425

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  L ++MK + I+P+         T+  L+ GLCK      A E  +++++KG   + 
Sbjct: 426 RAIALFNKMKDQAIRPN-------VYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNV 478

Query: 298 NTYFSLIEGIA 308
            TY  +I G+ 
Sbjct: 479 RTYTVMINGLC 489



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 161/310 (51%), Gaps = 7/310 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G +    +YG  ++G+CK G    A R+L +++   + P  V Y+ +ID  C    ++
Sbjct: 156 AQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVD 215

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+    EMV +GI P   TY++L+    +  ++  A D+L EM  + I PD  TY IL+
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILV 275

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G  K+A ++   M+   +   ++ Y++L+      N +  A ++F      G+ 
Sbjct: 276 DALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVT 335

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  ++ +I+G C    ++ A +L +E+ +  + PD VTY +L+   C+ G++     L
Sbjct: 336 PDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDL 395

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            D+M  RG  PD I       TYN LI  LCKN   D A  L  +M  + I P+  T+  
Sbjct: 396 FDEMLDRGQPPDVI-------TYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTI 448

Query: 303 LIEGIASVDK 312
           L++G+  V +
Sbjct: 449 LLDGLCKVGR 458



 Score =  163 bits (413), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 155/293 (52%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    + PD YTY   V  +CKEG+++EA  +L  M +  +    V Y+TL+DGYC    
Sbjct: 259 MVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNE 318

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G+ P    Y+++I+ L   +++ EA ++ +E+ +K +VPD++TY  
Sbjct: 319 VNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTS 378

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+  C+ G     + L DEM+ +G  P ++TY +LI  L K   +  A  LF     + 
Sbjct: 379 LIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQA 438

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P++  F  L+DG C  G ++ A    +++       +  TY  +++G C++G ++EA 
Sbjct: 439 IRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEAL 498

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            L  +M+  G   D ++F         +I+      E D AE+L+REM+++G+
Sbjct: 499 ALQSRMEDNGCISDAVTFE-------IMIRAFFDKDENDKAEKLVREMIARGL 544



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 149/312 (47%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ PD  TY   VSG C  G+L  A  +L +M    + P   TY  L+D  C +G 
Sbjct: 224 MVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGK 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    MVK  +      Y+ L+    +  ++  A  +   M + G+ PD   Y+I
Sbjct: 284 VKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSI 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     +A +L +E+  K + P  +TYTSLI  L K  R+     LF+  L +G
Sbjct: 344 MINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRG 403

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD++ +N LID  C NG+++RA +L  +M    + P+  T+  L+ G C+ G+++ A 
Sbjct: 404 QPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNAL 463

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                +  +G       +     TY  +I GLCK    D A  L   M   G   D  T+
Sbjct: 464 EFFQDLLTKG-------YCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTF 516

Query: 301 FSLIEGIASVDK 312
             +I      D+
Sbjct: 517 EIMIRAFFDKDE 528



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 7/311 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P ++ +   +  +    R   A  + +QM+ + + P   T N +I+ +C+ G + +AFS 
Sbjct: 56  PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSG 115

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P   T N L+  L +E K+ EA     ++  +G     I+Y ILING C+
Sbjct: 116 VSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCK 175

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A  L   +    I+P ++ Y+ +I  L K   + EA  L+   + KG+ PD+V 
Sbjct: 176 IGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVT 235

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           ++ L+ G C  G + RA  LL EM    ++PD  TY  L+   C++GKV+EA  +L  M 
Sbjct: 236 YSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMV 295

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           +  +  D +        Y+ L+ G C   E + A+ +   M   G+TPD + Y  +I G+
Sbjct: 296 KACVNLDVV-------VYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGL 348

Query: 308 ASVDKAAESSN 318
             + +  E+ N
Sbjct: 349 CKIKRVDEALN 359



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 9/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   V+PD +T    ++  C  G++  A   + ++ + G  P  +T NTL+ G C +G 
Sbjct: 84  MELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGK 143

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F D+++ QG   +  +Y +LI+ +    +   A  +L+ +    I P+ + Y++
Sbjct: 144 VKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSM 203

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+  C+     +A+ L+ EM+ KGI P ++TY+ L+       ++  A  L    + + 
Sbjct: 204 IIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLEN 263

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +  L+D  C  G ++ A ++L  M +  V+ D V Y+TLM G C   +V  A+
Sbjct: 264 INPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAK 323

Query: 241 RLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           R+   M + G+ PD H         Y+ +I GLCK +  D A  L  E+  K + PD  T
Sbjct: 324 RVFYTMTQMGVTPDVH--------CYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVT 375

Query: 300 YFSLIEGIA 308
           Y SLI+ + 
Sbjct: 376 YTSLIDCLC 384



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 9/245 (3%)

Query: 76  IMPTASTY--NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
           + PT  T+  N ++  L+  ++   A  + K+M    + PD  T NI+IN +C  G    
Sbjct: 52  VHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVL 111

Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
           AFS   +++  G QP  +T  +L+  L  + ++ EA +  +  LA+G     + +  LI+
Sbjct: 112 AFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILIN 171

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
           G C  G    A  LL+ ++R  + P+ V Y+ ++   C+   V+EA  L  +M  +GI P
Sbjct: 172 GVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISP 231

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
           D +       TY+ L+ G C   + + A +LL EMV + I PD  TY  L++ +    K 
Sbjct: 232 DVV-------TYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKV 284

Query: 314 AESSN 318
            E+ N
Sbjct: 285 KEAEN 289



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 93/182 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  + + PD+ TY S +  +CK GR+     + ++M + G  P  +TYN LID  C  G+
Sbjct: 364 IHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGH 423

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +  ++M  Q I P   T+ +L+  L    ++  A +  +++  KG   +  TY +
Sbjct: 424 LDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTV 483

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G   +A +L   M   G     +T+  +I     ++   +A++L    +A+G
Sbjct: 484 MINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543

Query: 181 ML 182
           +L
Sbjct: 544 LL 545



 Score = 90.5 bits (223), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 28/209 (13%)

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
           NA  A S  + M H    P    +  ++  L    R   A  L++      + PD    N
Sbjct: 38  NADDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLN 97

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
            +I+  C  G +  AFS + ++ ++   P+ +T NTLM G C +GKV+EA R  D++  +
Sbjct: 98  IIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQ 157

Query: 250 GIKPDHISF----------------------------NPTRLTYNALIQGLCKNQEGDLA 281
           G +   IS+                             P  + Y+ +I  LCK+   D A
Sbjct: 158 GFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEA 217

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASV 310
            +L  EMV KGI+PD  TY  L+ G   V
Sbjct: 218 YDLYTEMVGKGISPDVVTYSILVSGFCIV 246


>gi|255661012|gb|ACU25675.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 376

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 156/295 (52%), Gaps = 7/295 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G + ++  +LE  +  G V  A  Y+ +I+G C +  
Sbjct: 85  MKKSGFIEDSITYGILVHGFCKNGYINKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAK 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A S  + M+K G  P A  YN LI+ L+   K  +A  +++EMG     P  +TY+ 
Sbjct: 145 LDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAVRVVREMGTTNCSPTLVTYST 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+     +A+ L  EM+ KG+ P+++TY+ L+  L   +++  A QL     +KG
Sbjct: 205 LINGLCKVERFGEAYDLVKEMLZKGLNPSVITYSLLMKGLCLGHKVEMALQLXNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G  + A  L  +M+R    P+ VT+NTLM G  +   +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQLALLLYLDMNRWNCAPNLVTHNTLMEGFYKDDDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K I P
Sbjct: 325 VIWARILRNGLQPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTKKIVP 372



 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 147/301 (48%), Gaps = 8/301 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V PD+  Y + ++G  + GR+++   + E M   G    A ++N ++ G  + G ++   
Sbjct: 21  VSPDAVVYNAMLNGFFRVGRIKDCFELWEMMGREGSRSVA-SFNIMMRGLFDNGKVDEVI 79

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
           S  + M K G +  + TY +L+H       + ++  +L+    KG V D+  Y+ +ING 
Sbjct: 80  SILELMKKSGFIEDSITYGILVHGFCKNGYINKSLHVLEIAERKGGVLDAFAYSAMINGL 139

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+     KA S+ + MI  G +P    Y +LI  L   ++  +A ++          P +
Sbjct: 140 CKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAVRVVREMGTTNCSPTL 199

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V ++ LI+G C       A+ L+KEM    ++P  +TY+ LM G C   KVE A +L +Q
Sbjct: 200 VTYSTLINGLCKVERFGEAYDLVKEMLZKGLNPSVITYSLLMKGLCLGHKVEMALQLXNQ 259

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           +  +G KPD          +N LI GLC   +  LA  L  +M      P+  T+ +L+E
Sbjct: 260 VTSKGFKPD-------VQMHNILIHGLCSVGKTQLALLLYLDMNRWNCAPNLVTHNTLME 312

Query: 306 G 306
           G
Sbjct: 313 G 313



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 114/222 (51%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+++ Y + ++G+    + E+A R++ +M      PT VTY+TLI+G C    
Sbjct: 155 MIKSGCKPNAHVYNALINGLVGASKFEDAVRVVREMGTTNCSPTLVTYSTLINGLCKVER 214

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A+    EM+++G+ P+  TY+LL+  L +  K+  A  +  ++  KG  PD   +NI
Sbjct: 215 FGEAYDLVKEMLZKGLNPSVITYSLLMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNI 274

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C  G  + A  L+ +M      P ++T+ +L+    K + +  A  ++   L  G
Sbjct: 275 LIHGLCSVGKTQLALLLYLDMNRWNCAPNLVTHNTLMEGFYKDDDIRNALVIWARILRNG 334

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + PDI+ +N  + G C+   I  A   L +    K+ P  +T
Sbjct: 335 LQPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVPTIIT 376



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 139/291 (47%), Gaps = 41/291 (14%)

Query: 56  CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL--------------LMER------- 94
           C  G+++ A     E+V+  + P A  YN +++                +M R       
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGFFRVGRIKDCFELWEMMGREGSRSVA 60

Query: 95  -------------KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141
                        K+ E   +L+ M + G + DSITY IL++G+C+ G   K+  + +  
Sbjct: 61  SFNIMMRGLFDNGKVDEVISILELMKKSGFIEDSITYGILVHGFCKNGYINKSLHVLEIA 120

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             KG       Y+++I  L K+ ++ +A  +    +  G  P+  ++NALI+G       
Sbjct: 121 ERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKF 180

Query: 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
           E A  +++EM      P  VTY+TL++G C+  +  EA  L+ +M  +G+       NP+
Sbjct: 181 EDAVRVVREMGTTNCSPTLVTYSTLINGLCKVERFGEAYDLVKEMLZKGL-------NPS 233

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            +TY+ L++GLC   + ++A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 234 VITYSLLMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNILIHGLCSVGK 284


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 8/305 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G + +   Y + +  +    RLEE   +L++MK +G  PT  T+N++    C + ++  A
Sbjct: 487 GCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGA 546

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G  P    Y LL+ +L   ++  EA + L EM  +G +PD + Y+  I+G
Sbjct: 547 LDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDG 606

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + +     +A  +  ++  +G  P ++ Y +LI    K  R+ EA  + +  +AKG++P 
Sbjct: 607 FVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPS 666

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LIDG C NG+I++AF  L  M   +  P+ +TY TL+ G C  G+ ++A  L +
Sbjct: 667 VVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWN 726

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M+ +G  P+ ISF        ALI GLCK    D A    REM  +  TPD   Y +LI
Sbjct: 727 EMRGKGCSPNRISF-------IALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYVALI 778

Query: 305 EGIAS 309
               S
Sbjct: 779 TSFIS 783



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+PD+ ++   + G+C  G+L+ A  +   M   G     + YN LID   N   LE  +
Sbjct: 453 VRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECY 512

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM   G  PT  T+N +   L     +  A DM++EM   G  P    Y +L+   
Sbjct: 513 LLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQL 572

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+   + +A +   EM+ +G  P ++ Y++ I    K   + +A ++F +  A+G  PD+
Sbjct: 573 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDV 632

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N LI+G C    +  A  +L EM    + P  VTYN L+ G C+ G +++A   L +
Sbjct: 633 VAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSR 692

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +  +P+ I       TY  LI GLC     D A  L  EM  KG +P+  ++ +LI 
Sbjct: 693 MVGKEREPNVI-------TYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIH 745

Query: 306 GIA 308
           G+ 
Sbjct: 746 GLC 748



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 172/400 (43%), Gaps = 91/400 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------- 45
           M+  G  PD   Y + + G+C +  +E+A  +L +MKE G+ P                 
Sbjct: 329 MQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVD 388

Query: 46  ------------------VTYNTLIDGYCNKGNLEMAF---------SFRDE-------M 71
                             + YN++++G  N  +++ A+         ++ D        M
Sbjct: 389 IYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFM 448

Query: 72  VKQGIMPTASTYNLLIHELL----------MERKMV------------------------ 97
           VK+ + P  ++++++I  L           + R MV                        
Sbjct: 449 VKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRL 508

Query: 98  -EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
            E   +LKEM   G  P   T+N +    CR  +   A  +  EM   G +P +  YT L
Sbjct: 509 EECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLL 568

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           +  L K+ R  EA       + +G LPDIV ++A IDG      +++A  + +++     
Sbjct: 569 VKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGY 628

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD V YNTL++G C+  +V EA  +LD+M  +G+        P+ +TYN LI G CKN 
Sbjct: 629 CPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLV-------PSVVTYNLLIDGWCKNG 681

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + D A   L  MV K   P+  TY +LI+G+ +  +  ++
Sbjct: 682 DIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDA 721



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 57/367 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD YT  S +   C   + ++A  +  ++   G V   V  + L+  +   G 
Sbjct: 225 MCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHV-LSILVLTFSKCGE 283

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   + M   GI     T+ +LIH  + + ++ +A  + K+M + G  PD   Y+ 
Sbjct: 284 VDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDA 343

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ---NRMIE--------- 168
           LI G C     +KA  L  EM   GI P +   + LI   S++    R+IE         
Sbjct: 344 LIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTE 403

Query: 169 ------------------------------ADQLFEN------FLAKGML-PDIVMFNAL 191
                                          D   +N      F+ K M+ PD   F+ +
Sbjct: 404 AMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIV 463

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           IDG C  G ++ A SL ++M R+    + + YN L+       ++EE   LL +MK  G 
Sbjct: 464 IDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSG- 522

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
                 F PT+ T+N++   LC+ ++   A +++REM   G  P    Y  L++ +    
Sbjct: 523 ------FRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRK 576

Query: 312 KAAESSN 318
           ++AE+ N
Sbjct: 577 RSAEACN 583



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 155/352 (44%), Gaps = 58/352 (16%)

Query: 14  GSFVSGMCKEGRLEEASRMLEQMKENGL-VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
           G F+  +   G +EEA+ + +Q+K   L VP + ++N L++     G++++      EM 
Sbjct: 167 GFFIRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMC 226

Query: 73  KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
             G  P   T   ++      RK  +A  +  E+  +G V D    +IL+  + +CG   
Sbjct: 227 DSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLTFSKCGEVD 285

Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
           KAF L + M   GI+    T+  LI    +Q+R+ +A QLF+     G  PD+ +++ALI
Sbjct: 286 KAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALI 345

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPD-------------EV------------------ 221
            G C    IE+A  LL EM  + + PD             EV                  
Sbjct: 346 GGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAM 405

Query: 222 --TYNTLMHGRCRQGKVEEARRLLDQMK----------------RRGIKPDHISFNPTRL 263
              YN++++G      V++A  LL  M                 +  ++PD  SF     
Sbjct: 406 LLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSF----- 460

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
             + +I GLC   + DLA  L R+MV  G   +   Y +LI+ +++ ++  E
Sbjct: 461 --SIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEE 510


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 164/317 (51%), Gaps = 7/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD+ TY   + G+CK GRL  A  ++E M  +G  P A+TYN++I    +KGN
Sbjct: 191 MVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGN 250

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +F  + +++G  P   TY +LI  +        A ++L++M  +G  PD +TYN 
Sbjct: 251 FNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNS 310

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+N   + G  +    +   ++  G+QP  +TY +LI  L       E D + +      
Sbjct: 311 LVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETS 370

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P  V +N L++G C +G ++RA S    M      PD +TYNTL+ G C++G ++E  
Sbjct: 371 SPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGFIDEGI 430

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LL+ +          S +P  +TYN +I GL +    + A+EL  EMV KGI PD+ T+
Sbjct: 431 QLLNLLV-------GTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEITH 483

Query: 301 FSLIEGIASVDKAAESS 317
            SL  G    D+  E++
Sbjct: 484 SSLTWGFCRADQLEEAT 500



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 155/307 (50%), Gaps = 11/307 (3%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  P   TY   +  +CK      A  +LE M   G  P  VTYN+L++    +G  E 
Sbjct: 264 KGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYED 323

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                  ++  G+ P A TYN LIH L+      E DD+LK M E    P  +TYNIL+N
Sbjct: 324 TALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLN 383

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G   +A S +  M+ +   P ++TY +L+  L K+  + E  QL    +     P
Sbjct: 384 GLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSP 443

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            +V +N +IDG    G++E A  L  EM    + PDE+T+++L  G CR  ++EEA  LL
Sbjct: 444 GLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELL 503

Query: 244 DQ--MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
            +  MK + IK            Y  +I GLC+ ++ D+A ++L  MV     PD+  Y 
Sbjct: 504 KEMSMKEQRIK---------NTAYRCVILGLCRQKKVDIAIQVLDLMVKGQCNPDERIYS 554

Query: 302 SLIEGIA 308
           +LI+ +A
Sbjct: 555 ALIKAVA 561



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQ D  T    +  +C  G+L  A+R+++ M     +P   +   LI G+  KG ++ A 
Sbjct: 126 VQNDEMTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEAC 185

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              ++MV  G +P   TYN++I  L    ++  A D++++M   G  PD+ITYN +I   
Sbjct: 186 KTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCL 245

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
              GN  +A +   + + KG  P ++TYT LI ++ K      A ++ E+   +G  PDI
Sbjct: 246 FDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDI 305

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N+L++     G  E    ++  +    + P+ VTYNTL+H     G  +E   +L  
Sbjct: 306 VTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKI 365

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M       +  S  PT +TYN L+ GLCK+   D A      MV++  +PD  TY +L+ 
Sbjct: 366 M-------NETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLS 418

Query: 306 GIA 308
           G+ 
Sbjct: 419 GLC 421



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 127/257 (49%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G+QP++ TY + +  +   G  +E   +L+ M E    PT VTYN L++G C  G L+
Sbjct: 333 SHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLD 392

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A SF   MV +   P   TYN L+  L  E  + E   +L  +      P  +TYNI+I
Sbjct: 393 RAISFYSTMVTENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVI 452

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G  R G+ + A  L+DEM+ KGI P  +T++SL +   + +++ EA +L +    K   
Sbjct: 453 DGLARLGSMESAKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQR 512

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
                +  +I G C    ++ A  +L  M + + +PDE  Y+ L+      G ++EA  L
Sbjct: 513 IKNTAYRCVILGLCRQKKVDIAIQVLDLMVKGQCNPDERIYSALIKAVADGGMLKEANDL 572

Query: 243 LDQMKRRGIKPDHISFN 259
              + +  I    I  N
Sbjct: 573 HQTLIKWKILKKEIMLN 589



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 2/225 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P   TY   ++G+CK G L+ A      M      P  +TYNTL+ G C +G 
Sbjct: 366 MNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGF 425

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++      + +V     P   TYN++I  L     M  A ++  EM +KGI+PD IT++ 
Sbjct: 426 IDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEITHSS 485

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L  G+CR    ++A  L  EM  K  +     Y  +I  L +Q ++  A Q+ +  + KG
Sbjct: 486 LTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKVDIAIQVLD-LMVKG 544

Query: 181 ML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
              PD  +++ALI      G ++ A  L + + + K+   E+  N
Sbjct: 545 QCNPDERIYSALIKAVADGGMLKEANDLHQTLIKWKILKKEIMLN 589


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 8/305 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G + +   Y + +  +    RLEE   +L++MK +G  PT  T+N++    C + ++  A
Sbjct: 447 GCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGA 506

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM   G  P    Y LL+ +L   ++  EA + L EM  +G +PD + Y+  I+G
Sbjct: 507 LDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDG 566

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + +     +A  +  ++  +G  P ++ Y +LI    K  R+ EA  + +  +AKG++P 
Sbjct: 567 FVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPS 626

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N LIDG C NG+I++AF  L  M   +  P+ +TY TL+ G C  G+ ++A  L +
Sbjct: 627 VVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWN 686

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M+ +G  P+ ISF        ALI GLCK    D A    REM  +  TPD   Y +LI
Sbjct: 687 EMRGKGCSPNRISF-------IALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYVALI 738

Query: 305 EGIAS 309
               S
Sbjct: 739 TSFIS 743



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 146/303 (48%), Gaps = 7/303 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           V+P + ++   + G+C  G+L+ A  +   M   G     + YN LID   N   LE  +
Sbjct: 413 VRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECY 472

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
               EM   G  PT  T+N +   L     +  A DM++EM   G  P    Y +L+   
Sbjct: 473 LLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQL 532

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
           C+   + +A +   EM+ +G  P ++ Y++ I    K   + +A ++F +  A+G  PD+
Sbjct: 533 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDV 592

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +N LI+G C    +  A  +L EM    + P  VTYN L+ G C+ G +++A   L +
Sbjct: 593 VAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSR 652

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
           M  +  +P+ I       TY  LI GLC     D A  L  EM  KG +P+  ++ +LI 
Sbjct: 653 MVGKEREPNVI-------TYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIH 705

Query: 306 GIA 308
           G+ 
Sbjct: 706 GLC 708



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 172/400 (43%), Gaps = 91/400 (22%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------- 45
           M+  G  PD   Y + + G+C +  +E+A  +L +MKE G+ P                 
Sbjct: 289 MQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVD 348

Query: 46  ------------------VTYNTLIDGYCNKGNLEMAF---------SFRDE-------M 71
                             + YN++++G  N  +++ A+         ++ D        M
Sbjct: 349 IYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFM 408

Query: 72  VKQGIMPTASTYNLLIHELL----------MERKMV------------------------ 97
           VK+ + P  ++++++I  L           + R MV                        
Sbjct: 409 VKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRL 468

Query: 98  -EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
            E   +LKEM   G  P   T+N +    CR  +   A  +  EM   G +P +  YT L
Sbjct: 469 EECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLL 528

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           +  L K+ R  EA       + +G LPDIV ++A IDG      +++A  + +++     
Sbjct: 529 VKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGY 588

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            PD V YNTL++G C+  +V EA  +LD+M  +G+        P+ +TYN LI G CKN 
Sbjct: 589 CPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLV-------PSVVTYNLLIDGWCKNG 641

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + D A   L  MV K   P+  TY +LI+G+ +  +  ++
Sbjct: 642 DIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDA 681



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 156/367 (42%), Gaps = 57/367 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +PD YT  S +   C   + ++A  +  ++   G V   V  + L+  +   G 
Sbjct: 185 MCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHV-LSILVLTFSKCGE 243

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ AF   + M   GI     T+ +LIH  + + ++ +A  + K+M + G  PD   Y+ 
Sbjct: 244 VDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDA 303

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ---NRMIE--------- 168
           LI G C     +KA  L  EM   GI P +   + LI   S++    R+IE         
Sbjct: 304 LIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTE 363

Query: 169 ------------------------------ADQLFEN------FLAKGML-PDIVMFNAL 191
                                          D   +N      F+ K M+ P    F+ +
Sbjct: 364 AMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIV 423

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           IDG C  G ++ A SL ++M R+    + + YN L+       ++EE   LL +MK  G 
Sbjct: 424 IDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSG- 482

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
                 F PT+ T+N++   LC+ ++   A +++REM   G  P    Y  L++ +    
Sbjct: 483 ------FRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRK 536

Query: 312 KAAESSN 318
           ++AE+ N
Sbjct: 537 RSAEACN 543



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 124/289 (42%), Gaps = 45/289 (15%)

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
           EM   G  P   T   ++      RK  +A  +  E+  +G V D    +IL+  + +CG
Sbjct: 184 EMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLTFSKCG 242

Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
              KAF L + M   GI+    T+  LI    +Q+R+ +A QLF+     G  PD+ +++
Sbjct: 243 EVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYD 302

Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPD-------------EV--------------- 221
           ALI G C    IE+A  LL EM  + + PD             EV               
Sbjct: 303 ALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDT 362

Query: 222 -----TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN----------PTRLTYN 266
                 YN++++G      V++A  LL  M       D+   N          P   +++
Sbjct: 363 EAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYT-DNFEVNKFFMVKEMVRPXTTSFS 421

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
            +I GLC   + DLA  L R+MV  G   +   Y +LI+ +++ ++  E
Sbjct: 422 IVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEE 470


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 161/369 (43%), Gaps = 72/369 (19%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S  VQPD Y Y + V  +C+     +A  M+  M+ N    + V YN LI G C    + 
Sbjct: 124 SANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIW 183

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A   ++ ++++G+     TY           K  EA+ + KEMGEKG+  + ITY+ILI
Sbjct: 184 EALEIKNCLMQKGLEANVVTY---------YGKFNEAELLFKEMGEKGLCANHITYSILI 234

Query: 123 -----------------------------------NGYCRCGNAKKAFSLHDEMIHKGIQ 147
                                              NGYC+ GNA  A    DEMI KG+ 
Sbjct: 235 DSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLT 294

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           PT++TYTSLI     +    +A +++    AKG+ P+   F A+I G C    +  A  L
Sbjct: 295 PTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRL 354

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP------- 260
             EM   K+ P EVTYN ++ G CR G + EA  LLD+M  +G  PD  ++ P       
Sbjct: 355 FGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCS 414

Query: 261 ---------------------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
                                  + Y+AL+ G CK      A    R MV +G+  D   
Sbjct: 415 VGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVC 474

Query: 300 YFSLIEGIA 308
           Y  LI+G A
Sbjct: 475 YAILIDGTA 483



 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 178/375 (47%), Gaps = 76/375 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++G+ P++YT+ + +SG+C+   + EA R+  +MKE  ++P+ VTYN +I+G+C  GN
Sbjct: 323 MTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGN 382

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA----DDMLKE----------- 105
           +  AF   DEMV +G +P   TY  LI  L    ++ EA    DD+ K+           
Sbjct: 383 ISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSA 442

Query: 106 --------------------MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                               M E+G+  D + Y ILI+G  R  + +  F L  EM + G
Sbjct: 443 LVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHG 502

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           ++P  + YT++I   SK   + EA  L++  + +G LP++V + ALI+G C  G +++A 
Sbjct: 503 LRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAE 562

Query: 206 SLLKEMDRMKVHPDEVT----------------------------------YNTLMHGRC 231
            L KE     V P+ +T                                  YN L+ G C
Sbjct: 563 LLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFC 622

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           R GK+EEA +LL  M    I PD+I       TY+ +I   CK      A +L   M+ K
Sbjct: 623 RLGKIEEATKLLHGMTDNDILPDYI-------TYSTIIYEQCKRSNLQEAIKLWHTMLDK 675

Query: 292 GITPDDNTYFSLIEG 306
           G+ PD   Y  L+ G
Sbjct: 676 GLKPDTLAYSFLVHG 690



 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 160/333 (48%), Gaps = 41/333 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  PD+YTY   +SG+C  GR+ EA   ++ + ++      + Y+ L+ GYC +G 
Sbjct: 393 MVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGR 452

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A S    MV++G+      Y +LI     E        +LKEM   G+ PD++ Y  
Sbjct: 453 FKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTN 512

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-------- 172
           +I+ + + GN K+AF L D M+ +G  P ++TYT+LI  L K   M +A+ L        
Sbjct: 513 MIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSD 572

Query: 173 --------------------------FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
                                       + + KG L   V +N LI G C  G IE A  
Sbjct: 573 VTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCRLGKIEEATK 632

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
           LL  M    + PD +TY+T+++ +C++  ++EA +L   M  +G+KPD        L Y+
Sbjct: 633 LLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPD-------TLAYS 685

Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            L+ G C   E + A EL  EM+ +G+  +  T
Sbjct: 686 FLVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 157/363 (43%), Gaps = 63/363 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  +  TY   +   C+ G ++ A   L++M +  +  T   YN+LI+GYC  GN
Sbjct: 218 MGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGN 277

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLI---------HE---------------------- 89
              A  + DEM+ +G+ PT  TY  LI         H+                      
Sbjct: 278 ASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTA 337

Query: 90  ----LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
               L     M EA  +  EM E+ I+P  +TYN++I G+CR GN  +AF L DEM+ KG
Sbjct: 338 IISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKG 397

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P   TY  LI  L    R+ EA +  ++        + + ++AL+ G+C  G  + A 
Sbjct: 398 FVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAV 457

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
           S  + M    V  D V Y  L+ G  R+        LL +M   G++PD + +       
Sbjct: 458 SACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRH 517

Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
                                 P  +TY ALI GLCK    D AE L +E +   +TP+ 
Sbjct: 518 SKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNH 577

Query: 298 NTY 300
            TY
Sbjct: 578 ITY 580



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 146/319 (45%), Gaps = 22/319 (6%)

Query: 4   RGVQPDSYTYGS-FVSGMCKEGRLEEASRMLEQ-----MKENGLVPTAVTYNTLIDGYCN 57
           RG Q     +   F+S   K   +++   ML       MK+  L+P   T + L++G   
Sbjct: 49  RGKQSWRIAFNDPFISRNLKPSHVDKVLMMLSLNDSRLMKDCNLMPEVRTLSALLNGLLR 108

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
                      D++V   + P    Y+ ++  L   +   +A +M+  M         + 
Sbjct: 109 FRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVV 168

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN+LI+G C+     +A  + + ++ KG++  ++TY           +  EA+ LF+   
Sbjct: 169 YNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY---------YGKFNEAELLFKEMG 219

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            KG+  + + ++ LID  C  G ++ A   L +M +  +      YN+L++G C+ G   
Sbjct: 220 EKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNAS 279

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A+   D+M  +G+        PT +TY +LI G C   E   A ++  EM +KGI+P+ 
Sbjct: 280 AAKYYFDEMIDKGL-------TPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNT 332

Query: 298 NTYFSLIEGIASVDKAAES 316
            T+ ++I G+   +  AE+
Sbjct: 333 YTFTAIISGLCRANMMAEA 351


>gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 521

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 154/297 (51%), Gaps = 8/297 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+   + P+ YT    VS  CK G L +AS +LE+MK+ GL P  VT+N+LI GYC+KG 
Sbjct: 211 MRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYCDKGL 270

Query: 61  LEMAFSFRDEMV-KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L +A   RD M+ K G+ P   T+N LI+    E K+ EA+ +  EM    + P+ +TYN
Sbjct: 271 LGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYN 330

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LING+ + GN++    L +EM    ++  +LTY  LI  L K+ +  +A  + +     
Sbjct: 331 TLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVKELDKG 390

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++P+   F+ALI G C   N ERAF + + M R    P+E T+  L    C+    + A
Sbjct: 391 NLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRSGFSPNENTFRMLASAFCKNEDFDGA 450

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            ++L  M  R + PD           + +  GLC+      A  L  E+ +K + P 
Sbjct: 451 VQVLRDMLERFMTPD-------SSILSEVYSGLCRCGRKQFALMLCSEIEAKRLLPQ 500



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 148/277 (53%), Gaps = 8/277 (2%)

Query: 25  RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
           +L  A+    +MKE G  PT  + N  +         E+  SF  +M +  I P   T N
Sbjct: 165 KLRNATDTFVKMKEYGFFPTVESCNAFLSSMLYLKRPELVVSFYRQMRRNRISPNVYTIN 224

Query: 85  LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
           +++       ++ +A ++L++M + G+ P+ +T+N LI+GYC  G    A  + D M+ K
Sbjct: 225 MVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYCDKGLLGLALKVRDLMMGK 284

Query: 145 -GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
            G+ P ++T+ +LI    K+ ++ EA+++F       + P++V +N LI+G    GN E 
Sbjct: 285 NGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEM 344

Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              L +EM+R KV  D +TYN L+ G C++GK ++A  ++ ++ +  + P+         
Sbjct: 345 GIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKAAYMVKELDKGNLVPN-------AS 397

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           T++ALI G C     + A  + R MV  G +P++NT+
Sbjct: 398 TFSALIAGQCVRNNSERAFLVYRSMVRSGFSPNENTF 434



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 150/311 (48%), Gaps = 12/311 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G  P   +  +F+S M    R E       QM+ N + P   T N ++  YC  G 
Sbjct: 176 MKEYGFFPTVESCNAFLSSMLYLKRPELVVSFYRQMRRNRISPNVYTINMVVSAYCKLGE 235

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM---VEADDMLKEMGEKGIVPDSIT 117
           L  A    ++M   G+ P   T+N LI     +  +   ++  D++  MG+ G+ P+ +T
Sbjct: 236 LNKASEVLEKMKDMGLCPNVVTFNSLISGYCDKGLLGLALKVRDLM--MGKNGVFPNVVT 293

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           +N LING+C+ G   +A  +  EM    + P ++TY +LI    +         LFE   
Sbjct: 294 FNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEEME 353

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
              +  DI+ +N LI G C  G  ++A  ++KE+D+  + P+  T++ L+ G+C +   E
Sbjct: 354 RNKVKADILTYNGLILGLCKEGKTKKAAYMVKELDKGNLVPNASTFSALIAGQCVRNNSE 413

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
            A  +   M R G       F+P   T+  L    CKN++ D A ++LR+M+ + +TPD 
Sbjct: 414 RAFLVYRSMVRSG-------FSPNENTFRMLASAFCKNEDFDGAVQVLRDMLERFMTPDS 466

Query: 298 NTYFSLIEGIA 308
           +    +  G+ 
Sbjct: 467 SILSEVYSGLC 477



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 133/264 (50%), Gaps = 8/264 (3%)

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
           + + ++TL   + +   L  A     +M + G  PT  + N  +  +L  ++        
Sbjct: 149 SPLVFDTLFKTFAHMNKLRNATDTFVKMKEYGFFPTVESCNAFLSSMLYLKRPELVVSFY 208

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
           ++M    I P+  T N++++ YC+ G   KA  + ++M   G+ P ++T+ SLI     +
Sbjct: 209 RQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNSLISGYCDK 268

Query: 164 NRMIEADQLFENFLAK-GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
             +  A ++ +  + K G+ P++V FN LI+G C  G +  A  +  EM    V P+ VT
Sbjct: 269 GLLGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVT 328

Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
           YNTL++G  + G  E    L ++M+R  +K D        LTYN LI GLCK  +   A 
Sbjct: 329 YNTLINGFGQAGNSEMGIGLFEEMERNKVKAD-------ILTYNGLILGLCKEGKTKKAA 381

Query: 283 ELLREMVSKGITPDDNTYFSLIEG 306
            +++E+    + P+ +T+ +LI G
Sbjct: 382 YMVKELDKGNLVPNASTFSALIAG 405


>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
          Length = 689

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 169/351 (48%), Gaps = 45/351 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV  +  TY S + G CK+G +EEA  + E +KE  LV     Y  L+DGYC  G 
Sbjct: 72  MSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQ 131

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M++ G+    +  N LI+      ++VEA+ +   M +  + PD  TYN 
Sbjct: 132 IRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNT 191

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF----------VLSKQNRMI--- 167
           L++GYCR G   +A  L D+M  K + PT++TY  L+           VLS    M+   
Sbjct: 192 LVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRG 251

Query: 168 ----------------------EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                 EA +L+EN LA+G+L D +  N +I G C    +  A 
Sbjct: 252 VNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAK 311

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +L  ++  +  P   TY  L HG  + G ++EA  + + M+R+GI        PT   Y
Sbjct: 312 EILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGI-------FPTIEMY 364

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
           N LI G  K +  +   +L+ E+ ++G+TP   TY +LI G   I  +DKA
Sbjct: 365 NTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKA 415



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 169/355 (47%), Gaps = 50/355 (14%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG+  D+ T    +SG+CK  ++ EA  +L+ +      P   TY  L  GY   GNL+
Sbjct: 284 ARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLK 343

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF+ ++ M ++GI PT   YN LI      R + +  D++ E+  +G+ P   TY  LI
Sbjct: 344 EAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALI 403

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL----- 177
            G+C  G   KA++   EMI KGI   +   + +   L + +++ EA  L +  +     
Sbjct: 404 TGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLL 463

Query: 178 ---------------------------------AKGMLPDIVMFNALIDGHCTNGNIERA 204
                                             K ++P+ +++N  I G C  G +E A
Sbjct: 464 LPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDA 523

Query: 205 ---FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
              FS L   DR    PDE TY  L+HG    G + +A  L D+M  +GI P+ +     
Sbjct: 524 RKLFSDLLSSDRF--IPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIV----- 576

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             TYNALI+GLCK    D A+ LL ++  KGITP+  TY +LI+G+      AE+
Sbjct: 577 --TYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEA 629



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           M S  V PD +T    V+  C+ G +++A    ++ + + GL    VTYN+LI+GY   G
Sbjct: 1   MISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIG 60

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           ++E        M ++G+     TY  LI     +  M EA+ + + + EK +V D   Y 
Sbjct: 61  DVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYG 120

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +L++GYCR G  + A  +HD MI  G++       SLI    K  +++EA+Q+F      
Sbjct: 121 VLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDW 180

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + PD   +N L+DG+C  G ++ A  L  +M + +V P  +TYN L+ G  R G   + 
Sbjct: 181 SLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDV 240

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L   M +RG+  D IS        + L++ L K  + + A +L   ++++G+  D  T
Sbjct: 241 LSLWKMMLKRGVNADEISC-------STLLEALFKLGDFNEAMKLWENVLARGLLTDTIT 293

Query: 300 YFSLIEGIASVDKAAES 316
              +I G+  ++K  E+
Sbjct: 294 LNVMISGLCKMEKVNEA 310



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 161/309 (52%), Gaps = 33/309 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P    Y + +SG  K   L + + ++ +++  GL PT  TY  LI G+CN G 
Sbjct: 352 MERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGM 411

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A++   EM+++GI    +  + + + L    K+ EA  +L+++         + +++
Sbjct: 412 IDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKI---------VDFDL 462

Query: 121 LINGY-----------CRCGNAKK-AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           L+ GY             C   +K A S+ +    K + P  + Y   I  L K  ++ +
Sbjct: 463 LLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLED 522

Query: 169 ADQLFENFLAKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           A +LF + L+    +PD   +  LI G    G+I +AF+L  EM    + P+ VTYN L+
Sbjct: 523 ARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALI 582

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL-LR 286
            G C+ G V+ A+RLL ++ ++GI P+ I       TYN LI GL K+  G++AE + L+
Sbjct: 583 KGLCKLGNVDRAQRLLHKLPQKGITPNAI-------TYNTLIDGLVKS--GNVAEAMRLK 633

Query: 287 E-MVSKGIT 294
           E M+ KG+ 
Sbjct: 634 EKMIEKGLV 642



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 161/375 (42%), Gaps = 67/375 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++PD +TY + V G C+ G ++EA ++ +QM +  +VPT +TYN L+ GY   G 
Sbjct: 177 MNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGA 236

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                S    M+K+G+     + + L+  L       EA  + + +  +G++ D+IT N+
Sbjct: 237 FHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNV 296

Query: 121 LINGYC------------------RC-----------------GNAKKAFSLHDEMIHKG 145
           +I+G C                  RC                 GN K+AF++ + M  KG
Sbjct: 297 MISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKG 356

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I PT+  Y +LI    K   + +   L     A+G+ P +  + ALI G C  G I++A+
Sbjct: 357 IFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAY 416

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA--------------------RRLLDQ 245
           +   EM    +  +    + + +   R  K++EA                    +  L+ 
Sbjct: 417 ATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEA 476

Query: 246 MKRRGIKPDHIS-----------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-I 293
                +K   I+             P  + YN  I GLCK  + + A +L  +++S    
Sbjct: 477 SATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRF 536

Query: 294 TPDDNTYFSLIEGIA 308
            PD+ TY  LI G A
Sbjct: 537 IPDEYTYTILIHGCA 551



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD YTY   + G    G + +A  + ++M   G++P  VTYN LI G C  GN++ A   
Sbjct: 538 PDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRL 597

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
             ++ ++GI P A TYN LI  L+    + EA  + ++M EKG+V  S
Sbjct: 598 LHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKGLVRGS 645


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 174/351 (49%), Gaps = 44/351 (12%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLE 62
           G  PD ++Y   +  +C +G+  +A  +L  M E G V  P  V Y+T+IDG+  +G++ 
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVN 236

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EMV++GI P   TY+ ++H L   R M +A+  L++M  KG++P++ TYN LI
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLI 296

Query: 123 NGY-----------------------------------CRCGNAKKAFSLHDEMIHKGIQ 147
            GY                                   C+ G  K+A  + D M  KG  
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P + +YT ++   + +  +++   LF+  L  G+ PDI  FN LI  +   G +++A  +
Sbjct: 357 PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 416

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
             EM    V PD VTY T++   CR GK+++A    +QM  +G+ PD       +  Y+ 
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD-------KYAYHC 469

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LIQG C +     A+EL+ E+++ G+  D   + S+I  +  + +  ++ N
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQN 520



 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 167/342 (48%), Gaps = 42/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M ++GV P+++TY + + G    G+ +EA R+ ++M+ + ++P  VT + L+   C  G 
Sbjct: 280 MVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 339

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M  +G  P   +Y ++++    +  +V+  D+   M   GI PD  T+N+
Sbjct: 340 IKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNV 399

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y  CG   KA  + +EM   G++P ++TY ++I  L +  +M +A + F   + +G
Sbjct: 400 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 459

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE--------------------------MDRM 214
           + PD   ++ LI G CT+G++ +A  L+ E                          MD  
Sbjct: 460 VAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 519

Query: 215 KV---------HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +         HP  V Y+ LM G C  GK+E+A R+ D M   GI+P+ +        Y
Sbjct: 520 NIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDV-------VY 572

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             L+ G CK    D    L REM+ KGI P    Y  +I+G+
Sbjct: 573 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614



 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 162/307 (52%), Gaps = 7/307 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G  P+ ++Y   ++G   +G L + + + + M  +G+ P   T+N LI  Y N G 
Sbjct: 350 MAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGM 409

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EM   G+ P   TY  +I  L    KM +A +   +M ++G+ PD   Y+ 
Sbjct: 410 LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G+C  G+  KA  L  E+++ G+   ++ ++S+I  L K  R+++A  +F+  +  G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P  V+++ L+DG+C  G +E+A  +   M    + P++V Y TL++G C+ G+++E  
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +M ++GIKP  I        YN +I GL +      A+    EM   GI  +  TY
Sbjct: 590 SLFREMLQKGIKPSTI-------LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 642

Query: 301 FSLIEGI 307
             ++ G+
Sbjct: 643 NIVLRGL 649



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD Y Y   + G C  G L +A  ++ ++  NG+    V ++++I+  C  G 
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGR 514

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  D  V  G+ PTA  Y++L+    +  KM +A  +   M   GI P+ + Y  
Sbjct: 515 VMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+NGYC+ G   +  SL  EM+ KGI+P+ + Y  +I  L +  R + A   F      G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  +   +N ++ G   N   + A  L KE+  M V  + +T NT++ G  +  +VEEA+
Sbjct: 635 IAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAK 694

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            L   + R G+        P  +TY+ +I  L K    + AE++   M + G  PD
Sbjct: 695 DLFASISRSGLV-------PCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 142/338 (42%), Gaps = 66/338 (19%)

Query: 41  LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA- 99
           L PT+ TY  L+D        E+A +F  ++++ G+       N L+      ++  EA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 100 DDMLKEMGEKGIVPDSITYNIL-------------------------------------I 122
           D +L    E G VPD  +Y+IL                                     I
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVI 226

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G+ + G+  KA  L  EM+ +GI P  +TY+S++  L K   M +A+      + KG+L
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P+   +N LI G+ + G  + A  + KEM R  + PD VT + LM   C+ GK++EAR +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 346

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
            D M  +G  P+  S+                             P   T+N LI+    
Sbjct: 347 FDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYAN 406

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               D A  +  EM   G+ PD  TY ++I  +  + K
Sbjct: 407 CGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 444



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 122/253 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P +  Y   + G C  G++E+A R+ + M   G+ P  V Y TL++GYC  G ++  
Sbjct: 529 GLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEG 588

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM+++GI P+   YN++I  L    + V A     EM E GI  +  TYNI++ G
Sbjct: 589 LSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRG 648

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             +     +A  L  E+    ++  ++T  ++I  + +  R+ EA  LF +    G++P 
Sbjct: 649 LFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPC 708

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V ++ +I      G +E A  +   M      PD    N ++    ++ ++  A   L 
Sbjct: 709 VVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLS 768

Query: 245 QMKRRGIKPDHIS 257
           ++  R    +H++
Sbjct: 769 KIDERNFSLEHLT 781



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 16/267 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G++P+   YG+ V+G CK GR++E   +  +M + G+ P+ + YN +IDG    G 
Sbjct: 560 MVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 619

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     EM + GI     TYN+++  L   R   EA  + KE+    +  + IT N 
Sbjct: 620 TVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I G  +    ++A  L   +   G+ P ++TY+ +I  L K+  + EA+ +F +    G
Sbjct: 680 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD  + N ++        I RA + L ++D      + +T  T++             
Sbjct: 740 CEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLT--TML------------- 784

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNA 267
            L+D    +G   +HI F P +  + A
Sbjct: 785 -LVDLFSSKGTCREHIRFLPAKYHFLA 810



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 23/233 (9%)

Query: 98  EADDMLKEMGEKGIVPDSITYNILI--------NGYCRCGNAKKAFSLHDEMIHKG---- 145
           EA D+L E+  +G        N  +        +  CR G A  A +L +    +     
Sbjct: 47  EAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPAL-AVALFNRAASRAQGPR 105

Query: 146 -IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
            + PT  TY  L+   ++ +R   A   F   L  G+  +I++ N L+ G C     + A
Sbjct: 106 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEA 165

Query: 205 FS-LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
              LL     +   PD  +Y+ L+   C QGK  +A  LL  M   G        +P  +
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA-----VCSPDVV 220

Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA---SVDKA 313
            Y+ +I G  K  + + A +L +EMV +GI PD  TY S++  +    ++DKA
Sbjct: 221 AYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKA 273


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 167/313 (53%), Gaps = 9/313 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +RG  P +  Y S V+G+CK GR++EA + +++M+   L P   TY+ ++ GY   G 
Sbjct: 202 MIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGK 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E AF+  +EM  +   P   +Y + I  L    +  EA+ + + M EKG  PD  TY I
Sbjct: 262 VEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGI 321

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+ +C+ G+   A  +   M    ++P    YT ++    K +R+ EA +L++  L  G
Sbjct: 322 IIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDG 381

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK--VHPDEVTYNTLMHGRCRQGKVEE 238
           +LP  V +N +I+  C    ++ A  LL+EM R K  + P  VTY+ ++HG  + G  E 
Sbjct: 382 ILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEER 441

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A  LL +M   G+ PD         TY +LIQ L    +   A ELL EM+  GI PDD+
Sbjct: 442 AFDLLAEMIDNGVIPDC-------FTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDH 494

Query: 299 TYFSLIEGIASVD 311
           TY +L++ +   D
Sbjct: 495 TYGTLVQILCRSD 507



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 168/346 (48%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M +   +P   TY   V G+CK  ++E A  + E+M   G  P  + Y++LIDG    G 
Sbjct: 132 MVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGR 191

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A    D M+ +G  PTA  Y  ++  L    ++ EA   ++EM  + + P   TY+ 
Sbjct: 192 VDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSF 251

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ GY   G  ++AF++ +EM  +   P  ++YT  I  L    R  EA+++FE  + KG
Sbjct: 252 IVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+  +  +ID  C  G++  A  +L+ MD+  V P+   Y  +M G  +  ++EEA 
Sbjct: 312 CKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEAL 371

Query: 241 RLLDQMKRRGIKPDHISFN------------------------------PTRLTYNALIQ 270
            L  ++ + GI P  +++N                              P+ +TY+ +I 
Sbjct: 372 ELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIH 431

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           GL K    + A +LL EM+  G+ PD  TY SLI+ +A   K + +
Sbjct: 432 GLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRA 477



 Score =  154 bits (389), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 165/355 (46%), Gaps = 43/355 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKE-----------GRLEEASRMLEQMKENGLVPTAVTYN 49
           MK+RG+  +  T+G  +S +C              R EEA R+ E ++     P +VTY 
Sbjct: 55  MKARGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIE----APDSVTYT 110

Query: 50  TLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
            ++DG    GN +    + ++MV     PT  TY +L+  L    K+  A D+ +EM  K
Sbjct: 111 AIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRK 170

Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
           G  PD I Y+ LI+G  + G   +A  L D MI +G  PT + YTS++  L K  R+ EA
Sbjct: 171 GHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEA 230

Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
            +  +    + + P +  ++ ++ G+   G +E AF++++EM      PD ++Y   +  
Sbjct: 231 VKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEA 290

Query: 230 RCRQGKVEEARRLLDQMKRRGIKPD---------------------HI-------SFNPT 261
               G+ EEA ++ + M  +G KPD                     H+       +  P 
Sbjct: 291 LYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPN 350

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           R  Y  ++ G  K+   + A EL + ++  GI P   TY ++I  +  + K  E+
Sbjct: 351 RYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEA 405



 Score =  141 bits (355), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 3/261 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   PD+ +Y  F+  +   GR EEA ++ E M E G  P   TY  +ID +C +G+
Sbjct: 272 MADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGS 331

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M K  + P    Y +++   +   ++ EA ++ + + + GI+P ++TYN 
Sbjct: 332 MAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNT 391

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +IN  C+     +A  L  EM  +   ++P+++TY+ +I  L K      A  L    + 
Sbjct: 392 VINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMID 451

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G++PD   + +LI      G + RA  LL+EM +  + PD+ TY TL+   CR   V+ 
Sbjct: 452 NGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS-DVDA 510

Query: 239 ARRLLDQMKRRGIKPDHISFN 259
           A  LL +M R G  P+  +F 
Sbjct: 511 AWDLLQEMMRNGHTPNEFTFK 531



 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +PD +TYG  +   CKEG +  A+ +L  M +  + P    Y  ++DG+     
Sbjct: 307 MVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSR 366

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITY 118
           LE A      ++K GI+P+  TYN +I+ L   +KM EA ++L+EM  +   + P  +TY
Sbjct: 367 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 426

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +++I+G  + G  ++AF L  EMI  G+ P   TYTSLI  L+   ++  A +L E  L 
Sbjct: 427 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLK 486

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            G+ PD   +  L+   C   +++ A+ LL+EM R    P+E T+  +
Sbjct: 487 AGIFPDDHTYGTLVQILC-RSDVDAAWDLLQEMMRNGHTPNEFTFKAV 533



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 130/275 (47%), Gaps = 17/275 (6%)

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           N+L+      G L  A  F    + +   P  S++N+L+            + +L+EM  
Sbjct: 1   NSLLLALVRGGQLSDALGFFQSSISE---PNVSSFNILLRGFAARDDFEVVNALLREMKA 57

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ-------PTMLTYTSLIFVLS 161
           +GI  +  T+ ++++  C   +  KA S  +    +  +       P  +TYT+++  L 
Sbjct: 58  RGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLF 117

Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
           K        + +E  +A    P ++ +  L+DG C    +ERA  + +EM R    PD +
Sbjct: 118 KAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDII 177

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
            Y++L+ G  + G+V+EAR+L+D M  RG  P      PT + Y +++ GLCK      A
Sbjct: 178 AYSSLIDGLSKAGRVDEARKLVDLMIARG-PP------PTAVAYTSIVAGLCKCGRIQEA 230

Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            + ++EM  + + P  +TY  ++ G   + K  E+
Sbjct: 231 VKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEA 265


>gi|186478651|ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g19290
 gi|332191705|gb|AEE29826.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 169/351 (48%), Gaps = 45/351 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RGV  +  TY S + G CK+G +EEA  + E +KE  LV     Y  L+DGYC  G 
Sbjct: 287 MSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQ 346

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    D M++ G+    +  N LI+      ++VEA+ +   M +  + PD  TYN 
Sbjct: 347 IRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNT 406

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF----------VLSKQNRMI--- 167
           L++GYCR G   +A  L D+M  K + PT++TY  L+           VLS    M+   
Sbjct: 407 LVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRG 466

Query: 168 ----------------------EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                                 EA +L+EN LA+G+L D +  N +I G C    +  A 
Sbjct: 467 VNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAK 526

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +L  ++  +  P   TY  L HG  + G ++EA  + + M+R+GI        PT   Y
Sbjct: 527 EILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGI-------FPTIEMY 579

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG---IASVDKA 313
           N LI G  K +  +   +L+ E+ ++G+TP   TY +LI G   I  +DKA
Sbjct: 580 NTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKA 630



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 169/355 (47%), Gaps = 50/355 (14%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           +RG+  D+ T    +SG+CK  ++ EA  +L+ +      P   TY  L  GY   GNL+
Sbjct: 499 ARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLK 558

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF+ ++ M ++GI PT   YN LI      R + +  D++ E+  +G+ P   TY  LI
Sbjct: 559 EAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALI 618

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL----- 177
            G+C  G   KA++   EMI KGI   +   + +   L + +++ EA  L +  +     
Sbjct: 619 TGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLL 678

Query: 178 ---------------------------------AKGMLPDIVMFNALIDGHCTNGNIERA 204
                                             K ++P+ +++N  I G C  G +E A
Sbjct: 679 LPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDA 738

Query: 205 ---FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261
              FS L   DR    PDE TY  L+HG    G + +A  L D+M  +GI P+ +     
Sbjct: 739 RKLFSDLLSSDRFI--PDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIV----- 791

Query: 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             TYNALI+GLCK    D A+ LL ++  KGITP+  TY +LI+G+      AE+
Sbjct: 792 --TYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEA 844



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKG 59
           M S  V PD +T    V+  C+ G +++A    ++ + + GL    VTYN+LI+GY   G
Sbjct: 216 MISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIG 275

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           ++E        M ++G+     TY  LI     +  M EA+ + + + EK +V D   Y 
Sbjct: 276 DVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYG 335

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           +L++GYCR G  + A  +HD MI  G++       SLI    K  +++EA+Q+F      
Sbjct: 336 VLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDW 395

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + PD   +N L+DG+C  G ++ A  L  +M + +V P  +TYN L+ G  R G   + 
Sbjct: 396 SLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDV 455

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L   M +RG+  D IS        + L++ L K  + + A +L   ++++G+  D  T
Sbjct: 456 LSLWKMMLKRGVNADEISC-------STLLEALFKLGDFNEAMKLWENVLARGLLTDTIT 508

Query: 300 YFSLIEGIASVDKAAES 316
              +I G+  ++K  E+
Sbjct: 509 LNVMISGLCKMEKVNEA 525



 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 159/309 (51%), Gaps = 33/309 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ P    Y + +SG  K   L + + ++ +++  GL PT  TY  LI G+CN G 
Sbjct: 567 MERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGM 626

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A++   EM+++GI    +  + + + L    K+ EA  +L+++         + +++
Sbjct: 627 IDKAYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKI---------VDFDL 677

Query: 121 LINGY-----------CRCGNAKK-AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           L+ GY             C   +K A S+ +    K + P  + Y   I  L K  ++ +
Sbjct: 678 LLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLED 737

Query: 169 ADQLFENFLAKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227
           A +LF + L+    +PD   +  LI G    G+I +AF+L  EM    + P+ VTYN L+
Sbjct: 738 ARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALI 797

Query: 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELL 285
            G C+ G V+ A+RLL ++ ++GI P+ I       TYN LI GL K+  G++AE   L 
Sbjct: 798 KGLCKLGNVDRAQRLLHKLPQKGITPNAI-------TYNTLIDGLVKS--GNVAEAMRLK 848

Query: 286 REMVSKGIT 294
            +M+ KG+ 
Sbjct: 849 EKMIEKGLV 857



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 161/375 (42%), Gaps = 67/375 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++PD +TY + V G C+ G ++EA ++ +QM +  +VPT +TYN L+ GY   G 
Sbjct: 392 MNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGA 451

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
                S    M+K+G+     + + L+  L       EA  + + +  +G++ D+IT N+
Sbjct: 452 FHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNV 511

Query: 121 LINGYC------------------RC-----------------GNAKKAFSLHDEMIHKG 145
           +I+G C                  RC                 GN K+AF++ + M  KG
Sbjct: 512 MISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKG 571

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I PT+  Y +LI    K   + +   L     A+G+ P +  + ALI G C  G I++A+
Sbjct: 572 IFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAY 631

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA--------------------RRLLDQ 245
           +   EM    +  +    + + +   R  K++EA                    +  L+ 
Sbjct: 632 ATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEA 691

Query: 246 MKRRGIKPDHIS-----------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-I 293
                +K   I+             P  + YN  I GLCK  + + A +L  +++S    
Sbjct: 692 SATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRF 751

Query: 294 TPDDNTYFSLIEGIA 308
            PD+ TY  LI G A
Sbjct: 752 IPDEYTYTILIHGCA 766



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 147/293 (50%), Gaps = 14/293 (4%)

Query: 22  KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81
           ++G ++ A  + + M   G +P+ ++ N+L+     KG   +A    D+M+   + P   
Sbjct: 167 EKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMISFEVSPDVF 226

Query: 82  TYNLLIHELL----MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           T +++++       +++ MV A +    +   G+  + +TYN LINGY   G+ +    +
Sbjct: 227 TCSIVVNAYCRSGNVDKAMVFAKETESSL---GLELNVVTYNSLINGYAMIGDVEGMTRV 283

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
              M  +G+   ++TYTSLI    K+  M EA+ +FE    K ++ D  M+  L+DG+C 
Sbjct: 284 LRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCR 343

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G I  A  +   M  + V  +    N+L++G C+ G++ EA ++  +M    +KPDH  
Sbjct: 344 TGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDH-- 401

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
                 TYN L+ G C+    D A +L  +M  K + P   TY  L++G + +
Sbjct: 402 -----HTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRI 449



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 60/108 (55%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD YTY   + G    G + +A  + ++M   G++P  VTYN LI G C  GN++ A   
Sbjct: 753 PDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRL 812

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
             ++ ++GI P A TYN LI  L+    + EA  + ++M EKG+V  S
Sbjct: 813 LHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKGLVRGS 860



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 98/191 (51%), Gaps = 8/191 (4%)

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            +++++  Y   G  K A  + D M + G  P++L+  SL+  L ++     A  +++  
Sbjct: 157 VFDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQM 216

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD-RMKVHPDEVTYNTLMHGRCRQGK 235
           ++  + PD+   + +++ +C +GN+++A    KE +  + +  + VTYN+L++G    G 
Sbjct: 217 ISFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGD 276

Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           VE   R+L  M  RG+  + +       TY +LI+G CK    + AE +   +  K +  
Sbjct: 277 VEGMTRVLRLMSERGVSRNVV-------TYTSLIKGYCKKGLMEEAEHVFELLKEKKLVA 329

Query: 296 DDNTYFSLIEG 306
           D + Y  L++G
Sbjct: 330 DQHMYGVLMDG 340


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 162/329 (49%), Gaps = 28/329 (8%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG   ++Y + + + G C+EG+++EA  + + MK+ GLVP   +Y+ L+DG C +G++  
Sbjct: 275 RGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLT 334

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
            +    EM + GI PT  +Y+ L+H L    K+  A ++ + + E+G   D I Y+I++N
Sbjct: 335 GYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILN 394

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+  N +    L ++M+H    P    YTSLI+   +   + +A  +FE  L  G+ P
Sbjct: 395 GCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSP 454

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++V    L+DG      I+ AF  L ++ +  + P+   Y  +++G C+  K +    + 
Sbjct: 455 NVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIF 514

Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
             M +RG  PD + ++                            P   TY +LI GLC +
Sbjct: 515 ADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHD 574

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLI 304
                   L + M+ +G+TPD   Y SLI
Sbjct: 575 DRLPEVVTLFKHMIWEGLTPDRILYTSLI 603



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 153/289 (52%), Gaps = 7/289 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD+Y Y S +   C+   L +A  + E M ++G+ P  VT   L+DG+  +  ++ AF F
Sbjct: 419 PDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLF 478

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             ++ + GI+P    Y ++I+ L    K      +  +M ++G VPD++ Y+I+I+ + +
Sbjct: 479 LHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVK 538

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
                +AF L  +M+ +G +P + TYTSLI  L   +R+ E   LF++ + +G+ PD ++
Sbjct: 539 ALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRIL 598

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           + +LI  +C   N++ A  + + M ++ +  D   Y  L+ G  +   ++ A+ L+++M 
Sbjct: 599 YTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCLMEEMT 658

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            +G+        P+ +TY  LI G  K  +   A      M+  GITPD
Sbjct: 659 NKGL-------TPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPD 700



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 147/310 (47%), Gaps = 7/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P   +Y S + G+C+ G++E A  +  +++E G     + Y+ +++G C   N
Sbjct: 342 MARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLN 401

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E+     ++MV    +P A  Y  LI+     R + +A  + + M + G+ P+ +T  I
Sbjct: 402 IEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTI 461

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+ +     +AF    ++   GI P +  Y  +I  L K N+      +F + + +G
Sbjct: 462 LVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRG 521

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD V+++ +ID       +  AF L  +M      P+  TY +L++G C   ++ E  
Sbjct: 522 YVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVV 581

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   M   G+ PD       R+ Y +LI   CK      A E+ R M   G++ D   Y
Sbjct: 582 TLFKHMIWEGLTPD-------RILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLY 634

Query: 301 FSLIEGIASV 310
             LI G + V
Sbjct: 635 TCLIGGFSKV 644



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +G + D   Y   ++G C+   +E    +   M  +  VP A  Y +LI  +C   N
Sbjct: 377 LEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRN 436

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    + M+  G+ P   T  +L+     ER + EA   L ++ + GIVP+   Y +
Sbjct: 437 LTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRV 496

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+   +   + +  +MI +G  P  + Y+ +I    K  ++ EA +LF   L +G
Sbjct: 497 IINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEG 556

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++  + +LI+G C +  +    +L K M    + PD + Y +L+   C++  ++ A 
Sbjct: 557 TKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAAL 616

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   M + G+  D          Y  LI G  K    D A+ L+ EM +KG+TP   TY
Sbjct: 617 EIFRGMGKLGLSAD-------AFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTY 669

Query: 301 FSLIEG 306
            +LI G
Sbjct: 670 TNLIIG 675



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 158/346 (45%), Gaps = 30/346 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRL--EEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           MKS G  P+ Y+Y   +S      RL   EA  +L +M+  G+ P A TY T + G    
Sbjct: 200 MKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYGLSRT 259

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
             +  A++F   + ++G       +N +I     E ++ EA ++   M + G+VPD+ +Y
Sbjct: 260 RQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSY 319

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           +IL++G C+ G+    + L  EM   GI PT+++Y+SL+  L +  ++  A +LF     
Sbjct: 320 SILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEE 379

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G   D ++++ +++G C + NIE    L  +M      PD   Y +L++  CR   + +
Sbjct: 380 QGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTD 439

Query: 239 ARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQ 270
           A  + + M   G+ P+ ++                              P    Y  +I 
Sbjct: 440 ALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIIN 499

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           GLCK  + D    +  +M+ +G  PD   Y  +I+      K  E+
Sbjct: 500 GLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEA 545



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+  T    V G  KE  ++EA   L ++++ G+VP    Y  +I+G C    
Sbjct: 447 MLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNK 506

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +  +    +M+K+G +P    Y+++I   +   K+ EA  +  +M ++G  P+  TY  
Sbjct: 507 SDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTS 566

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C      +  +L   MI +G+ P  + YTSLI    K++ M  A ++F      G
Sbjct: 567 LINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLG 626

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  D  ++  LI G      ++ A  L++EM    + P  VTY  L+ G  + G   +A 
Sbjct: 627 LSADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKAN 686

Query: 241 RLLDQMKRRGIKPD 254
              + M + GI PD
Sbjct: 687 MTYNSMLQAGITPD 700



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 46/196 (23%)

Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN---IERAFSLLKEMD 212
           L+  L ++N++I A  LF++  + G  P++  ++ L+  + T+G+   +  AF LL EM+
Sbjct: 180 LLKCLVERNQIIYARSLFDDMKSSGPSPNVYSYSVLMSAY-THGDRLYLAEAFELLSEME 238

Query: 213 RMKVHPDEVTY-----------------------------------NTLMHGRCRQGKVE 237
              V P+  TY                                   N ++ G CR+G+V+
Sbjct: 239 MKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQ 298

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           EA  + D MK+ G+ PD  S       Y+ L+ GLCK  +     +LL EM   GI P  
Sbjct: 299 EAIEVFDAMKKGGLVPDTHS-------YSILVDGLCKQGDVLTGYDLLVEMARNGIAPTL 351

Query: 298 NTYFSLIEGIASVDKA 313
            +Y SL+ G+    K 
Sbjct: 352 VSYSSLLHGLCRAGKV 367



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
           +LL   +  KV  +    N L+     + ++  AR L D MK  G  P+  S       Y
Sbjct: 160 ALLTYTEAKKVGVELQLCNFLLKCLVERNQIIYARSLFDDMKSSGPSPNVYS-------Y 212

Query: 266 NALIQGLCKNQEGDLAE--ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           + L+          LAE  ELL EM  KG+ P+  TY + + G++   + A + N
Sbjct: 213 SVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVASAWN 267


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 152/300 (50%), Gaps = 42/300 (14%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV+P+  TYG  ++G CK G++E A  +L  M+  G+    + +NT+IDGYC KG ++ A
Sbjct: 103 GVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDA 162

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              +  M K G+            EL                       D  TYN L  G
Sbjct: 163 LKIKAAMEKMGV------------EL-----------------------DIYTYNTLACG 187

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A +L   MI  G+ P  +TYT+LI +  K   M+EA +LF     KG  P 
Sbjct: 188 LCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPS 247

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V +N +I G+   G+I  A    KEM++    PD  TY +L+HG C  GKV+ A +L +
Sbjct: 248 VVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFE 307

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +MK+RG +P+ ++       Y ALI GL K    + A +L  +M+  G+ PDD+ Y +L+
Sbjct: 308 EMKQRGTEPNVVA-------YTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 360



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 115/192 (59%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+ D YTY +   G+C+  RL+EA  +L  M E G+VP  VTY TLI  +C  G+
Sbjct: 169 MEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGD 228

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM ++G  P+  TYN++IH    +  + EA+   KEM +KG VPD  TY  
Sbjct: 229 MVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYAS 288

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G+C  G    A  L +EM  +G +P ++ YT+LI  L+K+ R   A QL+++ L  G
Sbjct: 289 LVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAG 348

Query: 181 MLPDIVMFNALI 192
           ++PD  +++AL+
Sbjct: 349 LIPDDSLYSALV 360



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 130/272 (47%), Gaps = 21/272 (7%)

Query: 40  GLVPTAVT---YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
           G  P +V+    + ++DG C  G ++ A    D+M + G+   A  YN L+   + ++  
Sbjct: 6   GSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDD 65

Query: 97  VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
               ++L+ M  +GI            G   CG   K     DE +  G++P   TY  L
Sbjct: 66  GRVQEILEIMENEGIEATV--------GDGTCGGPPKVL---DECVGNGVEPNERTYGVL 114

Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           I    K  +M  A+ L  +   +G+  + ++FN +IDG+C  G ++ A  +   M++M V
Sbjct: 115 INGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGV 174

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
             D  TYNTL  G CR  +++EA+ LL  M   G+ P+++       TY  LI   CK+ 
Sbjct: 175 ELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYV-------TYTTLISIHCKDG 227

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           +   A  L REM  KG TP   TY  +I G A
Sbjct: 228 DMVEARRLFREMAEKGATPSVVTYNVMIHGYA 259



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 94/165 (56%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV P+  TY + +S  CK+G + EA R+  +M E G  P+ VTYN +I GY  KG+
Sbjct: 204 MIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGS 263

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A  FR EM K+G +P   TY  L+H   +  K+  A  + +EM ++G  P+ + Y  
Sbjct: 264 IREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTA 323

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           LI+G  + G ++ AF L+D+M+  G+ P    Y++L+  L   NR
Sbjct: 324 LISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNR 368


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 170/315 (53%), Gaps = 8/315 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD ++Y + + G  KEG +++A  +  +M+E G++P  VTY++LI+G C    ++ A
Sbjct: 148 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 207

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                +MV  G+ P   TYN LIH         E+  + KEM    +VPD    N  +  
Sbjct: 208 ERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTA 267

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  K+A  + D M+ KG +P +++Y +L+   +    +   D LF   + +G++PD
Sbjct: 268 LCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPD 327

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
             +FN LI+ +   G ++++  + ++M +  V+PD +T++T++   CR G++++A    +
Sbjct: 328 RHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN 387

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF-SL 303
            M   G+ PD          Y+ LIQG C  ++   A+EL+ +M+SKGI P    +F S+
Sbjct: 388 HMIDTGVPPDTA-------VYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSI 440

Query: 304 IEGIASVDKAAESSN 318
           I  +    + AE  +
Sbjct: 441 INNLCKEGRVAEGKD 455



 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 162/308 (52%), Gaps = 8/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +PD  +YG+ + G    G +     +   M   G+VP    +NTLI+ Y   G 
Sbjct: 284 MVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGM 343

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ +    ++M KQG+ P   T++ +I       ++ +A +    M + G+ PD+  Y+ 
Sbjct: 344 MDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSC 403

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY-TSLIFVLSKQNRMIEADQLFENFLAK 179
           LI G C   +  KA  L  +M+ KGI P  + + TS+I  L K+ R+ E   + +  +  
Sbjct: 404 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT 463

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P+++ FN+L+DG+C  GN++ A  LL  M+ + V PD  TYNTL+ G C+ G++++A
Sbjct: 464 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA 523

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L   M        H     T ++YN ++ GL + +   +A+E+  EM+  G+    +T
Sbjct: 524 LTLFRDML-------HKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHT 576

Query: 300 YFSLIEGI 307
           Y +++ G+
Sbjct: 577 YATVLGGL 584



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 166/342 (48%), Gaps = 43/342 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M+ +G+ P+  TY S ++G+CK   +++A R+L QM   G+ P  +TYN LI GY     
Sbjct: 179 MEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGM 238

Query: 56  ------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                         C  G ++ A    D MV +G  P   +Y  
Sbjct: 239 WKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGA 298

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           L+H       +   D++   M  +G+VPD   +N LIN Y R G   K+  + ++M  +G
Sbjct: 299 LLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQG 358

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P ++T++++I    +  R+ +A + F + +  G+ PD  +++ LI G C   ++ +A 
Sbjct: 359 VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAK 418

Query: 206 SLLKEMDRMKVHPDEVTYNT-LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
            L+ +M    + P  + + T +++  C++G+V E + ++D +   G +P+ I       T
Sbjct: 419 ELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLI-------T 471

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           +N+L+ G C       A  LL  M S G+ PD  TY +L++G
Sbjct: 472 FNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDG 513



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 169/382 (44%), Gaps = 64/382 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV PD + + + ++   + G ++++  M E M + G+ P  +T++T+I  +C  G 
Sbjct: 319 MVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGR 378

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-N 119
           L+ A    + M+  G+ P  + Y+ LI      R +V+A +++ +M  KGI P  I +  
Sbjct: 379 LDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 438

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            +IN  C+ G   +   + D +IH G +P ++T+ SL+        M EA  L ++  + 
Sbjct: 439 SIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV 498

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR--------- 230
           G+ PDI  +N L+DG+C +G I+ A +L ++M   +V    V+YN ++HG          
Sbjct: 499 GVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVA 558

Query: 231 --------------------------CRQGKVEEARRLLDQMKRRGIKPDHISFN----- 259
                                     CR    +EA  LL+++    +K D ++FN     
Sbjct: 559 KEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRA 618

Query: 260 -----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
                                  PT LTY  +I  L K +  + A+ L   M     TPD
Sbjct: 619 MFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPD 678

Query: 297 DNTYFSLIEGIASVDKAAESSN 318
                 +I  + +  + A++ N
Sbjct: 679 SRILNEIIRMLLNKGEVAKAGN 700



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 130/250 (52%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G +P+  T+ S V G C  G ++EA  +L+ M+  G+ P   TYNTL+DGYC  G ++ A
Sbjct: 464 GQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDA 523

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            +   +M+ + +  T+ +YN+++H L   R+ + A +M  EM E G+     TY  ++ G
Sbjct: 524 LTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGG 583

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            CR     +A  L +++    ++  +LT+  +I  + K  R  EA +LF      G++P 
Sbjct: 584 LCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPT 643

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I+ +  +I       + E A +L   M++    PD    N ++     +G+V +A   L 
Sbjct: 644 ILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLS 703

Query: 245 QMKRRGIKPD 254
           ++ ++GI P+
Sbjct: 704 KIDKKGILPE 713



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 146/305 (47%), Gaps = 8/305 (2%)

Query: 1   MKSRGVQPDSYTY-GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M S+G+ P    +  S ++ +CKEGR+ E   +++ +   G  P  +T+N+L+DGYC  G
Sbjct: 424 MLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVG 483

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N++ A    D M   G+ P   TYN L+       ++ +A  + ++M  K +   S++YN
Sbjct: 484 NMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYN 543

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+++G  +      A  +  EMI  G+  ++ TY +++  L + N   EA+ L E   + 
Sbjct: 544 IILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSM 603

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            +  DI+ FN +I      G  + A  L   +    + P  +TY  ++    ++   E+A
Sbjct: 604 NVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDA 663

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L   M++    PD      +R+  N +I+ L    E   A   L ++  KGI P+  T
Sbjct: 664 DNLFSSMEKSSCTPD------SRI-LNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATT 716

Query: 300 YFSLI 304
              LI
Sbjct: 717 TSLLI 721



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S GV+PD YTY + V G CK GR+++A  +   M    +  T+V+YN ++ G      
Sbjct: 495 MESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARR 554

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A     EM++ G+  +  TY  ++  L       EA+ +L+++    +  D +T+NI
Sbjct: 555 TIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNI 614

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I    + G  ++A  L   +   G+ PT+LTY  +I  L K+    +AD LF +     
Sbjct: 615 VIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSS 674

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD  + N +I      G + +A + L ++D+  + P+  T + L++     GK  E  
Sbjct: 675 CTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYI 734

Query: 241 RLLDQMKR 248
           +LL +  R
Sbjct: 735 KLLPEKYR 742


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 166/304 (54%), Gaps = 16/304 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R  +P+   Y + +  +CK   + EA  +  +M   G+    VTY+ +I G+C  G L  
Sbjct: 197 RLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTE 256

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  F +EMV + I P    YN L+  L  E K+ EA ++L  + +  + P+ ITYN LI+
Sbjct: 257 ALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLID 316

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY     AK  F+    M   G+ P + +Y  +I  L K  R+ EA  L++    K M+P
Sbjct: 317 GY-----AKHVFNAVGLM---GVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVP 368

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           + V +N+LIDG C +G I  A+ L+ EM     H + +TYN+L++G C+ G++++A  L+
Sbjct: 369 NTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALI 428

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGL-CKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           ++MK +GI+PD         T N L+ GL CK +    A+ L ++++ KG  P+  TY  
Sbjct: 429 NKMKDQGIQPD-------MYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNI 481

Query: 303 LIEG 306
           +I G
Sbjct: 482 IIYG 485



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 167/331 (50%), Gaps = 36/331 (10%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD+ T  + + G+C +G++++A    +++   G     V+Y TLI+G C  G    A
Sbjct: 128 GYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAA 187

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYNILIN 123
                 +  +   P    YN +I + L +RK+V EA ++  EM  KGI  + +TY+ +I+
Sbjct: 188 IQLLRRIDGRLTEPNVVMYNTII-DCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIH 246

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G   +A    +EM+ K I P +  Y +L+  L K+ ++ EA  +    +   + P
Sbjct: 247 GFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKP 306

Query: 184 DIVMFNALIDGH---------------------------CTNGNIERAFSLLKEMDRMKV 216
           +++ +N LIDG+                           C    +E A +L KEM +  +
Sbjct: 307 NVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNM 366

Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
            P+ VTYN+L+ G C+ G++  A  L+D+M  RG        +   +TYN+LI GLCKN 
Sbjct: 367 VPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRG-------HHANVITYNSLINGLCKNG 419

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
           + D A  L+ +M  +GI PD  T   L+ G+
Sbjct: 420 QLDKAIALINKMKDQGIQPDMYTLNILLHGL 450



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 145/279 (51%), Gaps = 28/279 (10%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
           M  + + PD Y Y + V  + KEG+++EA  +L  + +  L P  +TYNTLIDGY     
Sbjct: 264 MVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVF 323

Query: 56  ----------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93
                                 C    +E A +   EM ++ ++P   TYN LI  L   
Sbjct: 324 NAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKS 383

Query: 94  RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
            ++  A D++ EM ++G   + ITYN LING C+ G   KA +L ++M  +GIQP M T 
Sbjct: 384 GRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTL 443

Query: 154 TSLIF-VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
             L+  +L K  R+  A  LF++ L KG  P++  +N +I GHC  G ++ A++L  +M+
Sbjct: 444 NILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKME 503

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
                P+ +T+  ++     +G+ ++A +LL +M  RG+
Sbjct: 504 DSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGL 542



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 153/328 (46%), Gaps = 55/328 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ + +QPD +T    ++  C  G++  A  +L ++ + G  P  VT  TLI G C KG 
Sbjct: 89  LELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQ 148

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F D+++ QG       + L                            D ++Y  
Sbjct: 149 VKKALHFHDKLLAQG-------FRL----------------------------DQVSYGT 173

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING C+ G  + A  L   +  +  +P ++ Y ++I  L K+  + EA  LF     KG
Sbjct: 174 LINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKG 233

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           +  ++V ++A+I G C  G +  A   L EM    ++PD   YNTL+    ++GKV+EA+
Sbjct: 234 ISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAK 293

Query: 241 RLLDQMKRRGIKPDHISFN--------------------PTRLTYNALIQGLCKNQEGDL 280
            +L  + +  +KP+ I++N                    P   +YN +I  LCK +  + 
Sbjct: 294 NVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEE 353

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIA 308
           A  L +EM  K + P+  TY SLI+G+ 
Sbjct: 354 ALNLYKEMHQKNMVPNTVTYNSLIDGLC 381



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 108/183 (59%), Gaps = 1/183 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P++ TY S + G+CK GR+  A  ++++M + G     +TYN+LI+G C  G 
Sbjct: 361 MHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQ 420

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME-RKMVEADDMLKEMGEKGIVPDSITYN 119
           L+ A +  ++M  QGI P   T N+L+H LL + +++  A  + +++ +KG  P+  TYN
Sbjct: 421 LDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYN 480

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I G+C+ G   +A++L  +M   G  P  +T+  +I  L ++    +A++L    +A+
Sbjct: 481 IIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIAR 540

Query: 180 GML 182
           G+L
Sbjct: 541 GLL 543



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 107/212 (50%), Gaps = 11/212 (5%)

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           K I PD  T NILIN +C  G    AFS+  +++  G QP  +T T+LI  L  + ++ +
Sbjct: 92  KAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKK 151

Query: 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
           A    +  LA+G   D V +  LI+G C  G    A  LL+ +D     P+ V YNT++ 
Sbjct: 152 ALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIID 211

Query: 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL--LR 286
             C++  V EA  L  +M  +GI  + +       TY+A+I G C    G L E L  L 
Sbjct: 212 CLCKRKLVSEACNLFSEMSVKGISANVV-------TYSAIIHGFC--IVGKLTEALGFLN 262

Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           EMV K I PD   Y +L++ +    K  E+ N
Sbjct: 263 EMVLKAINPDVYIYNTLVDALHKEGKVKEAKN 294



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 7/171 (4%)

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P ++ +  ++   +K         L      K + PD    N LI+  C  G I  AFS+
Sbjct: 61  PPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSV 120

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
           L ++ +    PD VT  TL+ G C +G+V++A    D++  +G + D +S       Y  
Sbjct: 121 LSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVS-------YGT 173

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           LI G+CK  E   A +LLR +  +   P+   Y ++I+ +      +E+ N
Sbjct: 174 LINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACN 224



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 63/207 (30%)

Query: 173 FENFLAKGMLPDIVMFNALIDG-----------------------------------HCT 197
           F   L     P I+ FN ++D                                     C 
Sbjct: 51  FHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCH 110

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G I  AFS+L ++ +    PD VT  TL+ G C +G+V++A    D++  +G + D +S
Sbjct: 111 LGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVS 170

Query: 258 FN----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMV 289
           +                             P  + YN +I  LCK +    A  L  EM 
Sbjct: 171 YGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMS 230

Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
            KGI+ +  TY ++I G   V K  E+
Sbjct: 231 VKGISANVVTYSAIIHGFCIVGKLTEA 257


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 9/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+ +  D Y Y S ++  C+ G +  AS + ++   NG+ P   TY  LI+G+C  G 
Sbjct: 239 MKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQ 298

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
           +E A     +M  +G+      +N +I +    + MV+    +K + EK GI  D  TYN
Sbjct: 299 MEAAEMLVTDMQVRGVGINQIVFNTMI-DGYCRKNMVDKALEIKMIMEKMGIELDVYTYN 357

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L  G  R     +A +L   MI KG++P  ++YT+LI +   +  M+EA +LF      
Sbjct: 358 TLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGN 417

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P +V +N ++DG+   G+I  A     EM++  + PD  +Y  L+HG C  GKV+ A
Sbjct: 418 GAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVA 477

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL ++MK+RG KP+ ++       Y ALI GL K    + A +L   M+  G+TPDD  
Sbjct: 478 LRLFEEMKQRGSKPNLVA-------YTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDAL 530

Query: 300 YFSLI 304
           Y +L+
Sbjct: 531 YSALV 535



 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 166/330 (50%), Gaps = 31/330 (9%)

Query: 8   PDSYTYGS---FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           PDS T  S    V G CK GR+  A ++L++M  +G+   A+ YN+L+D Y  + + +  
Sbjct: 138 PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRV 197

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M  +GI PT  TY +L+  L   R + + + + +EM  K +  D   Y+ +IN 
Sbjct: 198 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 257

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YCR GN ++A  + DE +  GI+P   TY +LI    K  +M  A+ L  +   +G+  +
Sbjct: 258 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 317

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            ++FN +IDG+C    +++A  +   M++M +  D  TYNTL  G  R  +++EA+ LL 
Sbjct: 318 QIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR 377

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  +G++P+H+S+                             P+ +TYN ++ G  K  
Sbjct: 378 IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKG 437

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               AE    EM  KG+ PD  +Y +L+ G
Sbjct: 438 SIREAERFKNEMEKKGLVPDIYSYAALVHG 467



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD Y+Y + V G C  G+++ A R+ E+MK+ G  P  V Y  LI G   +G 
Sbjct: 449 MEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGR 508

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
            E AF   D M+  G+ P  + Y+ L+  L  ++K
Sbjct: 509 SEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 543


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 169/369 (45%), Gaps = 63/369 (17%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R  + D+YT    V G+CKEG++E+  +++E+    G +P  V YNTLIDGYC KG+
Sbjct: 163 MVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGD 222

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI--------- 111
            E A     E+  +G +PT  TY  +I+    + K    D +L EM E+G+         
Sbjct: 223 TERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNN 282

Query: 112 --------------------------VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                                      PD  TYNILI G C CG   KA  L ++ I +G
Sbjct: 283 IIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRG 342

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           + P  ++YT LI    KQ   + A  L      +G  PD+V + ALI G    G ++ A 
Sbjct: 343 LLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVAL 402

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD----------- 254
           ++  +M    V PD   YN LM G C++G++  A+ LL +M  + + PD           
Sbjct: 403 TVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGF 462

Query: 255 --HISF---------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
             H  F               +P  + YNA+I+G CK      A    + M+    +PD+
Sbjct: 463 IRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDE 522

Query: 298 NTYFSLIEG 306
            TY ++I+G
Sbjct: 523 FTYSTIIDG 531



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 157/304 (51%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY   ++G C  G + +A ++LEQ  + GL+P  V+Y  LI  YC +G 
Sbjct: 303 MIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGE 362

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A     +M ++G  P   TY  LIH L++  ++  A  +  +M EKG++PD+  YN+
Sbjct: 363 YLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNV 422

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G    A  L  EM+ + + P      +L+    +     EA +LFE  + KG
Sbjct: 423 LMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKG 482

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P +V +NA+I G+C  G ++ A    K M +    PDE TY+T++ G  +   +  A 
Sbjct: 483 IDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGAL 542

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+   M +   KP+ +       TY  LI G C + + + AE+  ++M+S  + P+  TY
Sbjct: 543 RMFGLMVKGACKPNVV-------TYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTY 595

Query: 301 FSLI 304
             LI
Sbjct: 596 TILI 599



 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 154/302 (50%), Gaps = 9/302 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           PD ++  S ++ + K G++E A ++ ++M + NG V    T   ++ G C +G +E  + 
Sbjct: 135 PDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDN-YTVCIMVKGLCKEGKVEDGWK 193

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             ++   +G MP    YN LI     +     A+ + KE+  KG +P   TY  +ING+C
Sbjct: 194 LIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFC 253

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G  +    L  EM  +G+  ++  Y ++I    K    IEA       +  G  PD+ 
Sbjct: 254 KKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMA 313

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N LI G C+ G + +A  LL++  +  + P++V+Y  L+H  C+QG+   A  LL +M
Sbjct: 314 TYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKM 373

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             RG KPD +       TY ALI GL    E D+A  +  +MV KG+ PD N Y  L+ G
Sbjct: 374 SERGHKPDLV-------TYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSG 426

Query: 307 IA 308
           + 
Sbjct: 427 LC 428



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 158/358 (44%), Gaps = 40/358 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG +PD  TY + + G+   G ++ A  +  +M E G++P A  YN L+ G C KG 
Sbjct: 373 MSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGR 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM+ Q + P A     L+   +      EA  + +   EKGI P  + YN 
Sbjct: 433 LPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNA 492

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I GYC+ G  K A      MI     P   TY+++I    K N +  A ++F   +   
Sbjct: 493 MIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGA 552

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P++V +  LI+G C +G+I RA    K+M  +++ P+ VTY  L+   C+   + +A 
Sbjct: 553 CKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKAC 612

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------------------P 260
              +QM      P+ +++N                                         
Sbjct: 613 SFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDR 672

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
              +YN+++  LC+++    A  L  +M+SKG  PD  +  +L+ G+    ++ + +N
Sbjct: 673 RAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEGRSQDWNN 730



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 124/285 (43%), Gaps = 43/285 (15%)

Query: 26  LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
             E   +L+ MK   L+PT   ++ +I  + + G ++ A  F    +K            
Sbjct: 82  FSEVESLLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIK------------ 129

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
            IH                       VPD  + N L+N   + G  + A  ++DEM+ + 
Sbjct: 130 -IHH---------------------CVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRN 167

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
            +    T   ++  L K+ ++ +  +L E    +G +P+IV +N LIDG+C  G+ ERA 
Sbjct: 168 GEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERAN 227

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLT 264
            L KE+      P   TY  +++G C++GK E   +LL +M  RG+    HI        
Sbjct: 228 VLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHI-------- 279

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
           YN +I    K+     A + +  M+  G  PD  TY  LI G  S
Sbjct: 280 YNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCS 324



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 64/271 (23%)

Query: 98  EADDMLKEMGEKGI------------------------------------VPDSITYNIL 121
           E + +LK M  K +                                    VPD  + N L
Sbjct: 84  EVESLLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSL 143

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           +N   + G  + A  ++DEM+ +  +    T   ++  L K+ ++ +  +L E    +G 
Sbjct: 144 LNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGC 203

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           +P+IV +N LIDG+C  G+ ERA  L KE+      P   TY  +++G C++GK E   +
Sbjct: 204 MPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDK 263

Query: 242 LLDQMKRRGIKPD-HISFN---------------------------PTRLTYNALIQGLC 273
           LL +M  RG+    HI  N                           P   TYN LI G C
Sbjct: 264 LLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSC 323

Query: 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
              E   AE+LL + + +G+ P+  +Y  LI
Sbjct: 324 SCGEVHKAEQLLEQAIKRGLLPNKVSYTPLI 354



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 15/235 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M     +P+  TY   ++G C  G +  A +  +QM    L P  VTY  LI  +C   N
Sbjct: 548 MVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVN 607

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI---- 116
           L  A SF ++M+ +  +P   TYN L++ L      V ++    E  E  +V +S     
Sbjct: 608 LTKACSFFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQR-SEQTENSLVLESFGMMI 666

Query: 117 ---------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167
                    +YN ++   C+    K A  L D+M+ KG  P  ++  +L+  L  + R  
Sbjct: 667 SDGWDRRAASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEGRSQ 726

Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-DRMKVHPDEV 221
           + + +    L +  L   V ++  +D   + G    A  +L  + D+  +  +EV
Sbjct: 727 DWNNVISCKLNERELQVAVKYSEKLDAFLSQGQTSEASLILHSLADQFSLQMEEV 781



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 8/178 (4%)

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-KGMLPDIVMFNALIDG 194
           SL   M  K + PT   ++ +I V +    +  A + +  F+     +PD+   N+L++ 
Sbjct: 87  SLLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNV 146

Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
              +G +E A  +  EM       D  T   ++ G C++GKVE+  +L+++   RG  P+
Sbjct: 147 LVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPN 206

Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
            I F      YN LI G CK  + + A  L +E+  KG  P   TY ++I G     K
Sbjct: 207 -IVF------YNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGK 257


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 144/260 (55%), Gaps = 1/260 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKG 59
           M+S G  PD  TY + +SG+CK   L+ A  +L++++  N   P  +TY ++I G+   G
Sbjct: 224 MQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLG 283

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
            LE A    +EM++ GI PT  T+N+LI        MV A+ M ++M     +PD +T+ 
Sbjct: 284 KLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFT 343

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            LI+GYCR G+ +    + D M  + + P + TY+ +I  L K NR+ EA  L       
Sbjct: 344 SLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCS 403

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            + P   ++N +IDG C  GN++ A  ++ EM+  +  PD+VT+  L+ G C +G++ EA
Sbjct: 404 DVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEA 463

Query: 240 RRLLDQMKRRGIKPDHISFN 259
             +  +M   G  PD+I+ +
Sbjct: 464 LDIFKKMLAIGCAPDNITIS 483



 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 149/298 (50%), Gaps = 8/298 (2%)

Query: 10  SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
           S+ Y   ++ + K G++ EA  + ++       P   T+N LI G C  G +E  F   +
Sbjct: 163 SFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFN 222

Query: 70  EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILINGYCRC 128
            M   G +P   TYN LI  L    ++  A D+LKE+  +    PD +TY  +I+G+ + 
Sbjct: 223 AMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKL 282

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G  + A  L +EMI  GI+PT++T+  LI    K   M+ A+ + E   +   +PD+V F
Sbjct: 283 GKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTF 342

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
            +LIDG+C  G+I     +   M    V P+  TY+ +++  C+  ++ EAR LL Q+K 
Sbjct: 343 TSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKC 402

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
             + P    +NP       +I G CK    D A  ++ EM  K   PD  T+  LI G
Sbjct: 403 SDVFPKPFIYNP-------VIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIG 453



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 154/319 (48%), Gaps = 10/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+S G   DS   G  V+   + G+ + A +++ +++      ++  YN L++     G 
Sbjct: 119 MRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGK 178

Query: 61  L-EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           + E  F F++ +      P   T+N+LI  L    ++ +  ++   M   G +PD +TYN
Sbjct: 179 VHEAIFLFKENLAFHS-PPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYN 237

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            LI+G C+     +A  L  E+  +    P ++TYTS+I    K  ++  A  LFE  + 
Sbjct: 238 TLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIR 297

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
            G+ P +V FN LIDG    GN+  A ++ ++M      PD VT+ +L+ G CR G +  
Sbjct: 298 SGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRL 357

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
             ++ D MK R + P+         TY+ +I  LCK+     A +LLR++    + P   
Sbjct: 358 GLKVWDVMKARNVSPN-------IYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPF 410

Query: 299 TYFSLIEGIASVDKAAESS 317
            Y  +I+G        E++
Sbjct: 411 IYNPVIDGFCKAGNVDEAN 429



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 109/209 (52%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P   T+   + G  K G +  A  M E+M     +P  VT+ +LIDGYC  G+
Sbjct: 295 MIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGD 354

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +     D M  + + P   TY+++I+ L  + ++ EA D+L+++    + P    YN 
Sbjct: 355 IRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNP 414

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+ GN  +A  +  EM  K  +P  +T+T LI     + RM+EA  +F+  LA G
Sbjct: 415 VIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIG 474

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK 209
             PD +  ++L+      G    AF +++
Sbjct: 475 CAPDNITISSLVACLLKAGKPSEAFHIVQ 503



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 4/259 (1%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD  TY S +SG  K G+LE AS + E+M  +G+ PT VT+N LIDG+   GN+  A +
Sbjct: 266 SPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEA 325

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             ++M     +P   T+  LI        +     +   M  + + P+  TY+++IN  C
Sbjct: 326 MHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALC 385

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +     +A  L  ++    + P    Y  +I    K   + EA+ +      K   PD V
Sbjct: 386 KDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKV 445

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            F  LI GHC  G +  A  + K+M  +   PD +T ++L+    + GK  EA  ++   
Sbjct: 446 TFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFHIVQTA 505

Query: 247 KRRGIKPDHISFNPTRLTY 265
                +  ++SF+  R T+
Sbjct: 506 S----EDLNLSFSSLRKTF 520



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 134/296 (45%), Gaps = 43/296 (14%)

Query: 12  TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
           TY   +  +C+ G  +    ++  M+ +G +  +     L+  +   G  ++A     E+
Sbjct: 95  TYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEV 154

Query: 72  VKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131
             +    ++  YN L++EL+   K+ EA  + KE       P++ T+NILI G CR G  
Sbjct: 155 QGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEV 214

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           +K F L + M                             Q F      G LPD+V +N L
Sbjct: 215 EKGFELFNAM-----------------------------QSF------GCLPDVVTYNTL 239

Query: 192 IDGHCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           I G C    ++RA  LLKE+  R    PD +TY +++ G  + GK+E A  L ++M R G
Sbjct: 240 ISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSG 299

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           I+       PT +T+N LI G  K      AE +  +M S    PD  T+ SLI+G
Sbjct: 300 IE-------PTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDG 348



 Score = 93.6 bits (231), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 109/238 (45%), Gaps = 8/238 (3%)

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           STY LLI  L         + ++  M   G + DS     L+  + + G    A  L  E
Sbjct: 94  STYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIE 153

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
           +  +  + +   Y  L+  L K  ++ EA  LF+  LA    P+   FN LI G C  G 
Sbjct: 154 VQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGE 213

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
           +E+ F L   M      PD VTYNTL+ G C+  +++ A  LL +++ R         +P
Sbjct: 214 VEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRN------DCSP 267

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK--AAES 316
             +TY ++I G  K  + + A  L  EM+  GI P   T+  LI+G   +    AAE+
Sbjct: 268 DVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEA 325



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K   V P  + Y   + G CK G ++EA+ ++ +M+E    P  VT+  LI G+C KG 
Sbjct: 400 LKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGR 459

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           +  A     +M+  G  P   T + L+  LL   K  EA  +++   E
Sbjct: 460 MVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFHIVQTASE 507


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM +  +VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 174/333 (52%), Gaps = 29/333 (8%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
            ++P+ V F  LIDGHC NG ++ A  + K+M    + PD +TYNTL++G C++G +++A
Sbjct: 236 XLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNP-------------------------TRL---TYNALIQG 271
           + L+D+M  +G+KPD I++                            RL    Y ALI G
Sbjct: 296 QDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISG 355

Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           LC+      AE++LREM+S G+ P+  TY  +I
Sbjct: 356 LCQEGRSVDAEKMLREMLSVGLKPEIGTYTMII 388



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +N LVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q + P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 179/370 (48%), Gaps = 62/370 (16%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRL-----------------EEASRMLEQMKENGLVPTAV 46
           RG  PD  TY + + G+C+  R+                 +EA  + E+MK  G++P  +
Sbjct: 39  RGYIPDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVI 98

Query: 47  TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
           +Y++L+ G+C  G LE +    +EMV QG+ P    +N+LI  L  E K++EA  +L+  
Sbjct: 99  SYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVT 158

Query: 107 GEKGIVPDSITYN-----------------------------------ILINGYCRCGNA 131
            ++GI+ D +TYN                                   ILINGYC+    
Sbjct: 159 IQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKV 218

Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
           ++A +L++EM   G +P + TY++L+  L +  ++ +A++LF    A G+  D  ++   
Sbjct: 219 EEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIF 278

Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           +DG C NG +  A  L  E+       D  +Y+ L+ G C+ GKVE A     Q+ + G+
Sbjct: 279 LDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGL 338

Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAE---ELLREMVSKGITPDDNTYFSLIEGIA 308
           +P+ +       T N +I G C+ ++ D A    E + +M   G TPD  TY +L+ G  
Sbjct: 339 QPNVV-------TCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFC 391

Query: 309 SVDKAAESSN 318
             +K  E  N
Sbjct: 392 ESNKLEEVVN 401



 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 160/309 (51%), Gaps = 27/309 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD +T     + +C   R+ E    +  +   G +P  VTYNTLI G C    
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 61  LEMAFS-FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           + +A     D + K G            HE        EA ++ +EM  +G++P+ I+Y+
Sbjct: 61  ISVATCIIIDGLCKVG------------HE-------DEAKEIFEEMKAQGMIPNVISYS 101

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L++G+C  G  +++  L +EM+ +G+QP ++ +  LI +L K+ ++IEA +L E  + +
Sbjct: 102 SLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQR 161

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++ D+V +N+LIDG C  G++  A  L   M       +E++Y  L++G C+  KVEEA
Sbjct: 162 GIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEA 221

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L ++M + G +P+         TY+ L+ GL +  +   A +L   M + GI+ D   
Sbjct: 222 MNLYNEMPQVGKRPN-------VKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCI 274

Query: 300 YFSLIEGIA 308
           Y   ++G+ 
Sbjct: 275 YVIFLDGLC 283



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 128/249 (51%), Gaps = 3/249 (1%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG+  D  TY S + G CK G L  A ++   M   G     ++Y  LI+GYC    +E 
Sbjct: 161 RGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEE 220

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A +  +EM + G  P   TY+ L+  LL   K+ +A+ +   M   GI  DS  Y I ++
Sbjct: 221 AMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLD 280

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G C+ G   +A  L +E+     +    +Y+ LI  L K  ++  A + F+    +G+ P
Sbjct: 281 GLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQP 340

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMK---VHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++V  N +I G C    +++A  L ++M++M+     PD +TYNTL+ G C   K+EE  
Sbjct: 341 NVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVV 400

Query: 241 RLLDQMKRR 249
            LL +M +R
Sbjct: 401 NLLHKMFKR 409



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 25/137 (18%)

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD+   N L +  C    +    + +  + R    PD VTYNTL+ G CR  ++  A
Sbjct: 5   GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVA 64

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             ++                         I GLCK    D A+E+  EM ++G+ P+  +
Sbjct: 65  TCII-------------------------IDGLCKVGHEDEAKEIFEEMKAQGMIPNVIS 99

Query: 300 YFSLIEGIASVDKAAES 316
           Y SL+ G     K  ES
Sbjct: 100 YSSLVHGFCCAGKLEES 116



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRM---LEQMKENGLVPTAVTYNTLIDGYCN 57
           +   G+QP+  T    + G C+  ++++A+ +   +E+M+ENG  P  +TYNTL+ G+C 
Sbjct: 333 LSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCE 392

Query: 58  KGNLEMAFSFRDEMVKQ 74
              LE   +   +M K+
Sbjct: 393 SNKLEEVVNLLHKMFKR 409


>gi|357529169|sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g13630
          Length = 826

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 174/355 (49%), Gaps = 49/355 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PDS TY     G    G +  A  ++  M + GL P  +TY  L+ G C  GN
Sbjct: 325 MNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN 384

Query: 61  LEMAFSFRDEMVKQG-----IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           ++M      +M+ +G     I+P +    +++  L    ++ EA  +  +M   G+ PD 
Sbjct: 385 IDMGLVLLKDMLSRGFELNSIIPCS----VMLSGLCKTGRIDEALSLFNQMKADGLSPDL 440

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + Y+I+I+G C+ G    A  L+DEM  K I P   T+ +L+  L ++  ++EA  L ++
Sbjct: 441 VAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDS 500

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            ++ G   DIV++N +IDG+  +G IE A  L K +    + P   T+N+L++G C+   
Sbjct: 501 LISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQN 560

Query: 236 VEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNA 267
           + EAR++LD +K  G+ P  +S+                             PT +TY+ 
Sbjct: 561 IAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSV 620

Query: 268 LIQGLCKNQEGDLAEELLRE------------MVSKGITPDDNTYFSLIEGIASV 310
           + +GLC+  + +    +LRE            M S+GI PD  TY ++I+ +  V
Sbjct: 621 IFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRV 675



 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 43/344 (12%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           + +TY + V G+C++ +LE+A   L   +   + P+ V++N+++ GYC  G ++MA SF 
Sbjct: 228 NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFF 287

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             ++K G++P+  ++N+LI+ L +   + EA ++  +M + G+ PDS+TYNIL  G+   
Sbjct: 288 CTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLL 347

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIF------------------------------ 158
           G    A+ +  +M+ KG+ P ++TYT L+                               
Sbjct: 348 GMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIP 407

Query: 159 ------VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
                  L K  R+ EA  LF    A G+ PD+V ++ +I G C  G  + A  L  EM 
Sbjct: 408 CSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMC 467

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
             ++ P+  T+  L+ G C++G + EAR LLD +   G   D +        YN +I G 
Sbjct: 468 DKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIV-------LYNIVIDGY 520

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K+   + A EL + ++  GITP   T+ SLI G       AE+
Sbjct: 521 AKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEA 564



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 159/321 (49%), Gaps = 20/321 (6%)

Query: 1   MKSRGVQPDSYTYGS-FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M SRG + +S    S  +SG+CK GR++EA  +  QMK +GL P  V Y+ +I G C  G
Sbjct: 395 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 454

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +MA    DEM  + I+P + T+  L+  L  +  ++EA  +L  +   G   D + YN
Sbjct: 455 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 514

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I+GY + G  ++A  L   +I  GI P++ T+ SLI+   K   + EA ++ +     
Sbjct: 515 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLY 574

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK---- 235
           G+ P +V +  L+D +   GN +    L +EM    + P  VTY+ +  G CR  K    
Sbjct: 575 GLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENC 634

Query: 236 --------VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
                    E+ ++ L  M+  GI PD I       TYN +IQ LC+ +    A   L  
Sbjct: 635 NHVLRERIFEKCKQGLRDMESEGIPPDQI-------TYNTIIQYLCRVKHLSGAFVFLEI 687

Query: 288 MVSKGITPDDNTYFSLIEGIA 308
           M S+ +     TY  LI+ + 
Sbjct: 688 MKSRNLDASSATYNILIDSLC 708



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 154/343 (44%), Gaps = 54/343 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+S T+G+ + G+C++G L EA  +L+ +  +G     V YN +IDGY   G 
Sbjct: 466 MCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGC 525

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      +++ GI P+ +T+N LI+     + + EA  +L  +   G+ P  ++Y  
Sbjct: 526 IEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTT 585

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK-----------QNRMIE- 168
           L++ Y  CGN K    L  EM  +GI PT +TY+ +   L +           + R+ E 
Sbjct: 586 LMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEK 645

Query: 169 ADQLFENFLAKGMLPDIVMFNA-----------------------------------LID 193
             Q   +  ++G+ PD + +N                                    LID
Sbjct: 646 CKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILID 705

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C  G I +A S +  +    V   +  Y TL+   C +G  E A +L  Q+  RG   
Sbjct: 706 SLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRG--- 762

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
               FN +   Y+A+I  LC+    + ++     M+S+GI+PD
Sbjct: 763 ----FNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPD 801



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ------------MKENGLVPTAVTY 48
           MK+ G+ P + TY     G+C+  + E  + +L +            M+  G+ P  +TY
Sbjct: 606 MKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITY 665

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           NT+I   C   +L  AF F + M  + +  +++TYN+LI  L +   + +AD  +  + E
Sbjct: 666 NTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQE 725

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           + +      Y  LI  +C  G+ + A  L  +++H+G   ++  Y+++I  L +++ + E
Sbjct: 726 QNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNE 785

Query: 169 ADQLFENFLAKGMLPDIVMFNALI 192
           +   F   L++G+ PD+ +   +I
Sbjct: 786 SKFFFCLMLSQGISPDLDICEVMI 809


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/324 (33%), Positives = 162/324 (50%), Gaps = 30/324 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGR------LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
           G  P    Y   +  +C +        LE A +   +M   G+V   +  ++     C+ 
Sbjct: 402 GHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSA 461

Query: 59  GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
           G  E AFS   EM+ QG +P  STY+ ++  L    KM  A  + +EM   G+V D  TY
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTY 521

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
            I+++ +C+ G  ++A    +EM   G  P ++TYT+LI    K  ++  A++LFE  L+
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLS 581

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-----------------DRMKVHPDEV 221
           +G LP+IV ++ALIDGHC  G +E+A  + + M                 D     P+ V
Sbjct: 582 EGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVV 641

Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
            Y  L+ G C+  +VEEAR+LLD M   G +P+ I        Y+ALI GLCK  + D A
Sbjct: 642 IYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQI-------VYDALIDGLCKVGKLDEA 694

Query: 282 EELLREMVSKGITPDDNTYFSLIE 305
           +E+  EM   G      TY SLI+
Sbjct: 695 QEVKAEMSEHGFPATLYTYSSLID 718



 Score =  157 bits (397), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 159/333 (47%), Gaps = 24/333 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + GV  +     SF   +C  G+ E+A  ++ +M   G +P   TY+ ++   CN   
Sbjct: 439 MLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASK 498

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E+AF   +EM + G++    TY +++        + +A     EM E G  P+ +TY  
Sbjct: 499 MELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTA 558

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+ Y +      A  L + M+ +G  P ++TY++LI    K  +M +A Q+FE      
Sbjct: 559 LIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSK 618

Query: 181 MLPD-----------------IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            +PD                 +V++ AL+DG C    +E A  LL  M      P+++ Y
Sbjct: 619 DVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVY 678

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           + L+ G C+ GK++EA+ +  +M   G       F  T  TY++LI    K +  DLA +
Sbjct: 679 DALIDGLCKVGKLDEAQEVKAEMSEHG-------FPATLYTYSSLIDRYFKVKRQDLASK 731

Query: 284 LLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +L +M+     P+   Y  +I+G+  V K  E+
Sbjct: 732 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 764



 Score =  156 bits (395), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 164/340 (48%), Gaps = 32/340 (9%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+   YG+ + G CK  R+EEA ++L+ M   G  P  + Y+ LIDG C  G L+ A  
Sbjct: 637 RPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQE 696

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
            + EM + G   T  TY+ LI      ++   A  +L +M E    P+ + Y  +I+G C
Sbjct: 697 VKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC 756

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G   +A+ L   M  KG QP ++TYT++I    +  ++    +L E   +KG+ P+ V
Sbjct: 757 KVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYV 816

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +  LID  C NG ++ A +LL+EM +         Y  ++ G  ++    E+  LLD++
Sbjct: 817 TYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKE--FIESLGLLDEI 874

Query: 247 KRRGIKP--------------------------DHISFNPTRL----TYNALIQGLCKNQ 276
            +    P                          +  +F+ T +    TYN+LI+ LC   
Sbjct: 875 GQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLAN 934

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + D A  L  EM  KG+ P+  T+ SLI+G+    K +E+
Sbjct: 935 KVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEA 974



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 146/312 (46%), Gaps = 13/312 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++    PD+  Y   +SG+C+    EEA   L +M+    +P  VTY+TL+ G  NK  
Sbjct: 293 METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQ 352

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L       + M+ +G  P+   +N L+H          A  +LK+M + G  P  + YNI
Sbjct: 353 LGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNI 412

Query: 121 LINGYC------RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           LI   C       C   + A   + EM+  G+    +  +S    L    +  +A  +  
Sbjct: 413 LIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIR 472

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             + +G +PD   ++ ++   C    +E AF L +EM R  +  D  TY  ++   C+ G
Sbjct: 473 EMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG 532

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
            +E+AR+  ++M+  G  P+ +       TY ALI    K ++   A EL   M+S+G  
Sbjct: 533 LIEQARKWFNEMREVGCTPNVV-------TYTALIHAYLKAKKVSYANELFETMLSEGCL 585

Query: 295 PDDNTYFSLIEG 306
           P+  TY +LI+G
Sbjct: 586 PNIVTYSALIDG 597



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 159/362 (43%), Gaps = 50/362 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-----------------KENGLVP 43
           M S G  P+  TY + + G CK G++E+A ++ E+M                  +N   P
Sbjct: 579 MLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERP 638

Query: 44  TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
             V Y  L+DG+C    +E A    D M  +G  P    Y+ LI  L    K+ EA ++ 
Sbjct: 639 NVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 698

Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
            EM E G      TY+ LI+ Y +      A  +  +M+     P ++ YT +I  L K 
Sbjct: 699 AEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 758

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
            +  EA +L +    KG  P++V + A+IDG    G IE    LL+ M    V P+ VTY
Sbjct: 759 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTY 818

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS--------FN---------------- 259
             L+   C+ G ++ A  LL++MK+    P H +        FN                
Sbjct: 819 RVLIDHCCKNGALDVAHNLLEEMKQTHW-PTHAAGYRKVIEGFNKEFIESLGLLDEIGQD 877

Query: 260 ---PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD--NTYFSLIEGIA---SVD 311
              P    Y  L+  L K Q  ++A  LL E+ +   T  D  +TY SLIE +     VD
Sbjct: 878 DTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVD 937

Query: 312 KA 313
           KA
Sbjct: 938 KA 939



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 4/246 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M      P+   Y   + G+CK G+ +EA ++++ M+E G  P  VTY  +IDG+   G 
Sbjct: 736 MLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGK 795

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E      + M  +G+ P   TY +LI        +  A ++L+EM +      +  Y  
Sbjct: 796 IETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRK 855

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF--LA 178
           +I G+ +     ++  L DE+      P +  Y  L+  L K  R+  A +L E     +
Sbjct: 856 VIEGFNK--EFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFS 913

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
             ++     +N+LI+  C    +++AF L  EM +  V P+  T+ +L+ G  R  K+ E
Sbjct: 914 ATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISE 973

Query: 239 ARRLLD 244
           A  LLD
Sbjct: 974 ALLLLD 979



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 135/314 (42%), Gaps = 20/314 (6%)

Query: 9   DSYTYGSF----VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           D   +G F    V   C+ G    A   L ++K+    P+  TYN LI  +     L+ A
Sbjct: 195 DKEVFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSA 254

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM    +     T     + L    K  EA   L  M  +  VPD++ Y  LI+G
Sbjct: 255 SLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREA---LTLMETENFVPDTVFYTKLISG 311

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C     ++A    + M      P ++TY++L+     + ++    ++    + +G  P 
Sbjct: 312 LCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPS 371

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK------VEE 238
             +FN+L+  +CT+G+   A+ LLK+M +    P  V YN L+   C          +E 
Sbjct: 372 PKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLEL 431

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A +   +M   G+  + I+        ++  + LC   + + A  ++REM+ +G  PD +
Sbjct: 432 AEKAYSEMLATGVVLNKINV-------SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTS 484

Query: 299 TYFSLIEGIASVDK 312
           TY  ++  + +  K
Sbjct: 485 TYSKVLGYLCNASK 498



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 10/219 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G QP+  TY + + G  + G++E    +LE+M   G+ P  VTY  LID  C  G 
Sbjct: 771 MEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGA 830

Query: 61  LEMAFSFRDEMVKQGIMPT-ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           L++A +  +EM KQ   PT A+ Y  +I      ++ +E+  +L E+G+    P    Y 
Sbjct: 831 LDVAHNLLEEM-KQTHWPTHAAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSLYR 887

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTML----TYTSLIFVLSKQNRMIEADQLFEN 175
           +L++   +    + A  L +E+       T++    TY SLI  L   N++ +A +LF  
Sbjct: 888 LLVDNLIKAQRLEMALRLLEEV--ATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSE 945

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
              KG++P++  F +LI G   N  I  A  LL  +  M
Sbjct: 946 MSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLDFISHM 984


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 165/306 (53%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +  R  +P+   Y + +  +CK   + EA  +  +M   G+    VTY+TLI G+C +G 
Sbjct: 190 IDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK 249

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    +EMV + I P   TYN+L+  L  E K+ EA  +L  M +  + PD ITY+ 
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYST 309

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY      KKA  + + M   G+ P + TYT LI    K   + EA  LF+    K 
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN 369

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M+P IV +++LIDG C +G I   + L+ EM       + +TY++L+ G C+ G ++ A 
Sbjct: 370 MVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAI 429

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L ++MK +GI+P+         T+  L+ GLCK      A+E+ +++++KG   +  TY
Sbjct: 430 ALFNKMKDQGIRPN-------TFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482

Query: 301 FSLIEG 306
             +I+G
Sbjct: 483 NVMIDG 488



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 162/312 (51%), Gaps = 7/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  D  TY + + G C EG+L+EA  +L +M    + P   TYN L+D  C +G 
Sbjct: 225 MTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGK 284

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A S    M+K  + P   TY+ L+    +  ++ +A  +   M   G+ PD  TY I
Sbjct: 285 VKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTI 344

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LING+C+     +A +L  EM  K + P ++TY+SLI  L K  R+     L +    +G
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRG 404

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +++ +++LIDG C NG+++RA +L  +M    + P+  T+  L+ G C+ G++++A+
Sbjct: 405 QPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQ 464

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +   +  +G       ++    TYN +I G CK    + A  +L +M   G  PD  T+
Sbjct: 465 EVFQDLLTKG-------YHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTF 517

Query: 301 FSLIEGIASVDK 312
             +I  +   D+
Sbjct: 518 EIIIIALFKKDE 529



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 167/340 (49%), Gaps = 42/340 (12%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  PD+ T  + + G+C +G++++A    +++   G     V+Y TLI+G C  G+   
Sbjct: 123 RGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRA 182

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     ++  +   P    Y+ +I  L   + + EA  +  EM  KGI  D +TY+ LI 
Sbjct: 183 AIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIY 242

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  G  K+A  L +EM+ K I P + TY  L+  L K+ ++ EA  +    L   + P
Sbjct: 243 GFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 184 DIVMFNALIDGH-----------------------------------CTNGNIERAFSLL 208
           D++ ++ L+DG+                                   C N  ++ A +L 
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
           KEM +  + P  VTY++L+ G C+ G++     L+D+M  RG +P ++      +TY++L
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRG-QPANV------ITYSSL 415

Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           I GLCKN   D A  L  +M  +GI P+  T+  L++G+ 
Sbjct: 416 IDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLC 455



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 7/305 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G+QPD  T    ++  C  G++     +L ++ + G  P  VT NTLI G C KG ++ 
Sbjct: 88  KGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKK 147

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A  F D+++ QG      +Y  LI+ +        A  +L+++  +   P+ + Y+ +I+
Sbjct: 148 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIID 207

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             C+     +A+ L  EM  KGI   ++TY++LI+    + ++ EA  L    + K + P
Sbjct: 208 ALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINP 267

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           ++  +N L+D  C  G ++ A S+L  M +  V PD +TY+TLM G     +V++A+ + 
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           + M   G+ PD         TY  LI G CKN+  D A  L +EM  K + P   TY SL
Sbjct: 328 NAMSLMGVTPD-------VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 304 IEGIA 308
           I+G+ 
Sbjct: 381 IDGLC 385



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 142/267 (53%), Gaps = 9/267 (3%)

Query: 29   ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
            A  +  +++  G+ P   T N LI+ +C+ G +   FS   +++K+G  P   T+  LI+
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 89   ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
             L ++ ++ +A     ++  +G   + ++Y  LING C+ G+ + A  L  ++  +  +P
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKP 1064

Query: 149  TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
             ++ Y ++I  L K   + +A  LF     KG+  D+V +N LI G C  G ++ A  LL
Sbjct: 1065 DVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLL 1124

Query: 209  KEMDRMKVHPDEVTYNTLMHGRCRQGK--VEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
             +M    ++P+  TYN L+   C++GK  ++E+  +L +M+  G K + ++F        
Sbjct: 1125 NKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTF-------E 1177

Query: 267  ALIQGLCKNQEGDLAEELLREMVSKGI 293
             +I  L +  E D  E+LL EM+++G+
Sbjct: 1178 IIISALFEKDENDKVEKLLHEMIARGL 1204



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 126/250 (50%), Gaps = 2/250 (0%)

Query: 4    RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
            +G+QPD +T    ++  C  G++     +L ++ + G  P  +T+ TLI+G C KG +  
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014

Query: 64   AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
            A  F D+++ QG      +Y  LI+ +        A  +L+++  +   PD + YN +I+
Sbjct: 1015 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIID 1074

Query: 124  GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
              C+     KA+ L  EM  KGI   ++TY +LI+      ++ EA  L    + K + P
Sbjct: 1075 ALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINP 1134

Query: 184  DIVMFNALIDGHCTNGN--IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            ++  +N L+D  C  G   ++ + S+L +M+      + VT+  ++     + + ++  +
Sbjct: 1135 NVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEK 1194

Query: 242  LLDQMKRRGI 251
            LL +M  RG+
Sbjct: 1195 LLHEMIARGL 1204



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 7/200 (3%)

Query: 109  KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
            KGI PD  T NILIN +C  G     FS+  +++ +G  P  +T+T+LI  L  + ++ +
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014

Query: 169  ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228
            A    +  LA+G   + V +  LI+G C  G+   A  LL+++D     PD V YNT++ 
Sbjct: 1015 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIID 1074

Query: 229  GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
              C+   V +A  L  +M  +GI  D +       TYN LI G C   +   A  LL +M
Sbjct: 1075 ALCKHQLVSKAYGLFFEMNVKGISADVV-------TYNTLIYGFCIVGKLKEAIGLLNKM 1127

Query: 289  VSKGITPDDNTYFSLIEGIA 308
            V K I P+  TY  L++ + 
Sbjct: 1128 VLKTINPNVRTYNILVDALC 1147



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 134  AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
            A SL   +  KGIQP + T   LI       ++     +    L +G  PD + F  LI+
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 194  GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
            G C  G + +A     ++       ++V+Y TL++G C+ G    A +LL ++  R  KP
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKP 1064

Query: 254  DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
            D +        YN +I  LCK+Q    A  L  EM  KGI+ D  TY +LI G   V K 
Sbjct: 1065 DVV-------MYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKL 1117

Query: 314  AES 316
             E+
Sbjct: 1118 KEA 1120



 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGR--LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58
            M  + + P+  TY   V  +CKEG+  L+E+  ML +M++NG    AVT+  +I     K
Sbjct: 1127 MVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEK 1186

Query: 59   GNLEMAFSFRDEMVKQGIM 77
               +       EM+ +G++
Sbjct: 1187 DENDKVEKLLHEMIARGLL 1205


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 157/306 (51%), Gaps = 7/306 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+  +Y   + G+CK G  EEA  +  +M + G+ P  VT++ LID  C +G +  A  
Sbjct: 234 RPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKK 293

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             + M++ GI+P   TY  LI    +   +  A ++   M  KG  PD I+YN+LINGYC
Sbjct: 294 LLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYC 353

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           +    ++A  L +EM+H G+ P + T   L+  L    ++ +A +LF       M  D+ 
Sbjct: 354 KTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLC 413

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           +    +DG C NG I  A  L  E++   +  D  T+  L+ G C+ GK+E A  L +++
Sbjct: 414 ICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKL 473

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              GI+PD        + Y+++I G CK  + D A  L ++M   G +PD  TY  L+ G
Sbjct: 474 YEEGIQPD-------AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRG 526

Query: 307 IASVDK 312
               +K
Sbjct: 527 FYESNK 532



 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 156/314 (49%), Gaps = 16/314 (5%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           +++   ++G+ K     +   + +QM   GL P  +T N LI+  CN   +    +    
Sbjct: 92  FSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAG 151

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
           ++++G +P   T+  LI  L +E +++EA  +   M + G  P+ +TY  LI G C  GN
Sbjct: 152 IMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGN 211

Query: 131 AKKAFSLHDEMIHK------GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
              A   H EM++         +P +++Y+ +I  L K     EA  LF   + +G+ P+
Sbjct: 212 INIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPN 271

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +V F+ LID  C  G + +A  LL+ M ++ + P+  TY +L+ G C  G +  A+ L  
Sbjct: 272 VVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFV 331

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M  +G +PD IS       YN LI G CK  + + A +L  EM+  G+ PD  T   L+
Sbjct: 332 SMPSKGYEPDVIS-------YNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLL 384

Query: 305 EGI---ASVDKAAE 315
           + +     VD A E
Sbjct: 385 KALFLAGKVDDAKE 398



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 161/346 (46%), Gaps = 34/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ PD  T    ++ +C   R+ E    +  +   G +P  VT+ TLI G C +  
Sbjct: 117 MHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHR 176

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK------GIVPD 114
           +  A      M K G  P   TY  LI  L     +  A    +EM            P+
Sbjct: 177 IIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPN 236

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
            I+Y+I+I+G C+ GN ++A  L +EM+ +G+QP ++T++ LI +L K+ ++I+A +L E
Sbjct: 237 VISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLE 296

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             +  G++P++  + +LI G C  G++  A  L   M      PD ++YN L++G C+  
Sbjct: 297 MMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTL 356

Query: 235 KVEEARRLLDQMKRRGIKPDHIS-----------------------FNPTRLTYNALI-- 269
           KVEEA +L ++M   G+ PD  +                         P  +  +  I  
Sbjct: 357 KVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICC 416

Query: 270 ---QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
               GLCKN     A +L  E+ S  +  D  T+  LI+G+    K
Sbjct: 417 IFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGK 462



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 129/254 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G+ P+ +TY S + G C  G L  A  +   M   G  P  ++YN LI+GYC    
Sbjct: 298 MIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLK 357

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    +EM+  G+ P   T  +L+  L +  K+ +A ++ + +    +  D     I
Sbjct: 358 VEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCI 417

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            ++G C+ G   +A  L +E+    ++  + T+  LI  L K  ++  A +LFE    +G
Sbjct: 418 FLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEG 477

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + ++++I G C  G +++A  L ++M+     PD +TY+ LM G     K+E+  
Sbjct: 478 IQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVV 537

Query: 241 RLLDQMKRRGIKPD 254
           +LL +M  + + PD
Sbjct: 538 QLLHRMIEKDVWPD 551



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 20/304 (6%)

Query: 21  CKEGRLE--EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP 78
           CK G +   +A +  + M       +  ++N L+ G     +    FS   +M   G+ P
Sbjct: 70  CKTGSISVTQAHQFFDLMMR-----SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWP 124

Query: 79  TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138
              T N+LI+ L    ++ E    +  +  +G +PD +T+  LI G C      +A  L 
Sbjct: 125 DLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLF 184

Query: 139 DEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEADQLFENFLAKGML---PDIVMFNALI 192
             M   G  P ++TY +LI     L   N  ++  Q   N  +  +    P+++ ++ +I
Sbjct: 185 MRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIII 244

Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
           DG C  GN E A  L  EM    V P+ VT++ L+   C++G+V +A++LL+ M + GI 
Sbjct: 245 DGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIV 304

Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           P+         TY +LI+G C   + + A+EL   M SKG  PD  +Y  LI G     K
Sbjct: 305 PN-------LFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLK 357

Query: 313 AAES 316
             E+
Sbjct: 358 VEEA 361



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%)

Query: 16  FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
           F+ G+CK G + EA ++  +++   +     T+  LIDG C  G LE A+   +++ ++G
Sbjct: 418 FLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEG 477

Query: 76  IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
           I P A  Y+ +IH    + ++ +A+ + ++M E G  PD ITY+IL+ G+      +K  
Sbjct: 478 IQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVV 537

Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L   MI K + P    Y  +  ++ K  +  E   L + F  +
Sbjct: 538 QLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQ 581



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 35/244 (14%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLI-------- 52
           M S+G +PD  +Y   ++G CK  ++EEA ++  +M   G+ P   T   L+        
Sbjct: 333 MPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGK 392

Query: 53  ---------------------------DGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
                                      DG C  G +  A    +E+    +     T+  
Sbjct: 393 VDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGC 452

Query: 86  LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           LI  L    K+  A ++ +++ E+GI PD++ Y+ +I+G+C+ G   KA  L  +M   G
Sbjct: 453 LIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENG 512

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
             P ++TY+ L+    + N++ +  QL    + K + PD  ++  + D  C +   +   
Sbjct: 513 CSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWL 572

Query: 206 SLLK 209
            LL+
Sbjct: 573 DLLQ 576


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 7/310 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S G++PD++     ++ +C    +     +L  M + GL P+ VT+  LI+G C KG++ 
Sbjct: 104 SLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVG 163

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A    D + K G      TY +LI+ L    K  EA   L++M E+   P+ + Y+ ++
Sbjct: 164 RAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVM 223

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +G C+ G   +A  L  EM  KGI+P ++TYT LI  L    R  EA  L +  +  G++
Sbjct: 224 DGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVM 283

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+   N L+D  C  G I +A S++  M  +   PD  TYN+L+   C Q +++EA R+
Sbjct: 284 PDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRV 343

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
            + M  RG  PD ++       Y +LI G CK +  + A  LL EM+  G TPD  T+ +
Sbjct: 344 FELMVSRGCLPDIVA-------YTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTT 396

Query: 303 LIEGIASVDK 312
           LI G   V +
Sbjct: 397 LIGGFCQVGR 406



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 159/308 (51%), Gaps = 7/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G + D  TYG  ++G+CK G+  EA   L +M+E    P  V Y+T++DG C  G +  A
Sbjct: 176 GYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEA 235

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM  +GI P   TY  LI  L    +  EA  +L EM + G++PD  + NIL++ 
Sbjct: 236 LGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDV 295

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G   +A S+   MI  G  P + TY SLI     QN+M EA ++FE  +++G LPD
Sbjct: 296 LCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPD 355

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           IV + +LI G C   NI +A  LL EM ++   PD VT+ TL+ G C+ G+   A+ L  
Sbjct: 356 IVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFL 415

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
            M + G  P+         T   ++ GLCK+Q    A  L   M    +  +   Y  ++
Sbjct: 416 NMHKYGQVPN-------LQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIIL 468

Query: 305 EGIASVDK 312
           +G+ S  K
Sbjct: 469 DGMCSAGK 476



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 162/316 (51%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G++P+  TY   + G+C  GR +EA  +L++M + G++P   + N L+D  C +G 
Sbjct: 242 MSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGK 301

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S    M+  G +P   TYN LI    ++ +M EA  + + M  +G +PD + Y  
Sbjct: 302 IMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTS 361

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+C+  N  KA  L DEMI  G  P ++T+T+LI    +  R + A +LF N    G
Sbjct: 362 LIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYG 421

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +P++     ++DG C +  +  A SL   M++  +  + V Y+ ++ G C  GK+  A 
Sbjct: 422 QVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTAL 481

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L   +  +G++ +  +       Y  +I G  K    D AE+LL  M   G  PD  TY
Sbjct: 482 ELFSCLPAKGLQINVYA-------YTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTY 534

Query: 301 FSLIEGIASVDKAAES 316
              ++G+ +  + A S
Sbjct: 535 NVFVQGLVAEREIARS 550



 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 157/316 (49%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++P   T+   ++G+C +G +  A  +++ +++ G      TY  LI+G C  G 
Sbjct: 137 MLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGK 196

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A  +  +M ++   P    Y+ ++  L  +  + EA  +  EM  KGI P+ +TY  
Sbjct: 197 TSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTC 256

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI G C  G  K+A SL DEM+  G+ P + +   L+ VL K+ ++++A  +    +  G
Sbjct: 257 LIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVG 316

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD+  +N+LID +C    ++ A  + + M      PD V Y +L+HG C+   + +A 
Sbjct: 317 EVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAM 376

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LLD+M + G  PD +       T+  LI G C+      A+EL   M   G  P+  T 
Sbjct: 377 HLLDEMIKVGFTPDVV-------TWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTC 429

Query: 301 FSLIEGIASVDKAAES 316
             +++G+      +E+
Sbjct: 430 AIILDGLCKSQLLSEA 445



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 121/250 (48%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  PD +TY S +   C + +++EA+R+ E M   G +P  V Y +LI G+C   N+  A
Sbjct: 316 GEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKA 375

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               DEM+K G  P   T+  LI       + + A ++   M + G VP+  T  I+++G
Sbjct: 376 MHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDG 435

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+     +A SL   M    +   ++ Y+ ++  +    ++  A +LF    AKG+  +
Sbjct: 436 LCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQIN 495

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  +  +I+G    G +++A  LL  M+     PD  TYN  + G   + ++  + + L 
Sbjct: 496 VYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLT 555

Query: 245 QMKRRGIKPD 254
            M+ +G   D
Sbjct: 556 MMRDKGFSVD 565



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 56  CNKGNLEM---AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GI 111
           C  G L+    A +F   M K   +P+   + LL+  ++  +    A  ++KEM    GI
Sbjct: 48  CKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGI 107

Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
            PD+   N++IN  C        FS+   M+  G++P+++T+T LI  L  +  +  A +
Sbjct: 108 KPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVE 167

Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
           L ++    G   D+  +  LI+G C  G    A   L++M+    +P+ V Y+T+M G C
Sbjct: 168 LVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLC 227

Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
           + G V EA  L  +M  +GIKP+ +       TY  LIQGLC       A  LL EM+  
Sbjct: 228 KDGLVSEALGLCLEMSGKGIKPNLV-------TYTCLIQGLCNFGRWKEAGSLLDEMMKM 280

Query: 292 GITPD 296
           G+ PD
Sbjct: 281 GVMPD 285



 Score =  103 bits (257), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 97/211 (45%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M SRG  PD   Y S + G CK   + +A  +L++M + G  P  VT+ TLI G+C  G 
Sbjct: 347 MVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGR 406

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M K G +P   T  +++  L   + + EA  +   M +  +  + + Y+I
Sbjct: 407 PLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSI 466

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C  G    A  L   +  KG+Q  +  YT +I   +KQ  + +A+ L  N    G
Sbjct: 467 ILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENG 526

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
            +PD   +N  + G      I R+   L  M
Sbjct: 527 CMPDSCTYNVFVQGLVAEREIARSIKYLTMM 557


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 172/309 (55%), Gaps = 13/309 (4%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q +  +YG+ + G+CK G    A ++L  +    + P  V Y+T+I   C    + 
Sbjct: 77  AKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVI 136

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            AF    +M+ + I P   TYN L++  L+  ++ EA  +  +M  K I PD  T+NIL+
Sbjct: 137 DAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILV 196

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEADQLFENFLAK 179
           +G C+ G  KKA ++   MI + + P ++TY SL+   F++ ++N+   A  +F     +
Sbjct: 197 DGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENK---ATFVFNTMARR 253

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD+  ++ +I+G C    ++ A +LLKEM    + P+ VTY++L+ G  + G++ +A
Sbjct: 254 GVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDA 313

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L+++M  RG   D I       TYN+L+  LCKN + D A  LL ++  +GI PD  T
Sbjct: 314 WDLVNEMHNRGQPADVI-------TYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYT 366

Query: 300 YFSLIEGIA 308
           Y  L++G+ 
Sbjct: 367 YTILVDGLC 375



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 159/307 (51%), Gaps = 14/307 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + PD  TY + + G    GRL+EA  +  QM    + P   T+N L+DG C +G 
Sbjct: 145 MLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGE 204

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +    M+KQ + P   TYN L+    + ++  +A  +   M  +G+ PD  +Y++
Sbjct: 205 MKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSV 264

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+     +A +L  EM  K + P  +TY+SLI  L K  R+ +A  L      +G
Sbjct: 265 MINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRG 324

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              D++ +N+L+D  C N  +++A +LL ++    + PD  TY  L+ G C+ G++++A+
Sbjct: 325 QPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQ 384

Query: 241 RLLDQMKRRGIKPDHI--------------SFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
            +   +  +G   D +                 P  +T+  LI+ L +N   D A ELLR
Sbjct: 385 EVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLR 444

Query: 287 EMVSKGI 293
           EM+++G+
Sbjct: 445 EMIARGL 451



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 156/287 (54%), Gaps = 7/287 (2%)

Query: 6   VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
           VQP+   Y + +  +CK+  + +A  +  QM    + P  +TYNTL+ G    G L+ A 
Sbjct: 115 VQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAV 174

Query: 66  SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
              ++M+ + I P   T+N+L+  L  E +M +A ++L  M ++ + PD ITYN L++GY
Sbjct: 175 GLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGY 234

Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
                  KA  + + M  +G+ P + +Y+ +I  L K   + EA  L +   +K M P+ 
Sbjct: 235 FLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNT 294

Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
           V +++LIDG   +G I  A+ L+ EM       D +TYN+L+   C+  +V++A  LL +
Sbjct: 295 VTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTK 354

Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
           +K +GI+PD         TY  L+ GLCKN     A+E+ + ++ KG
Sbjct: 355 IKDQGIQPD-------IYTYTILVDGLCKNGRLKDAQEVYQILLIKG 394



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 152/306 (49%), Gaps = 13/306 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM---- 63
           P  + +G   + + K         +  QM+  G+    V  N L++ +C+ G + +    
Sbjct: 6   PTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKV 65

Query: 64  --AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
                F D+++ +G      +Y  LI  L    +   A  +L+ +    + P+ + Y+ +
Sbjct: 66  KETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTI 125

Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
           I   C+      AF L+ +M+ K I P ++TY +L++      R+ EA  LF   L K +
Sbjct: 126 IYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNI 185

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
            PDI  FN L+DG C  G +++A ++L  M +  V PD +TYN+LM G     +  +A  
Sbjct: 186 KPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATF 245

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           + + M RRG+ PD  S       Y+ +I GLCK +  D A  LL+EM SK + P+  TY 
Sbjct: 246 VFNTMARRGVTPDVHS-------YSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYS 298

Query: 302 SLIEGI 307
           SLI+G+
Sbjct: 299 SLIDGL 304



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 21/98 (21%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASR---------------------MLEQMKEN 39
           +K +G+QPD YTY   V G+CK GRL++A                       +L +M++N
Sbjct: 355 IKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDN 414

Query: 40  GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM 77
           G  P  VT+  LI         + A     EM+ +G++
Sbjct: 415 GCTPNPVTFEILIRALFENDMNDKAVELLREMIARGLL 452


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 158/292 (54%), Gaps = 7/292 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +   CK G +  A  + + + + GL P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  +  M   G+ P   TY++LI+ L  E KM +A+ +  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + + P ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+   C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           +M   G+KP+         TY  +I   CK  +     +LL+EM   G  P+
Sbjct: 371 EMLSVGLKPE-------IGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPN 415



 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 137/222 (61%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q ++P   TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P+ VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 170/317 (53%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +I+      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H      ++  A  +   + + G+ P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L   M   G+QP + TY+ LI  L K+++M +A+ LF+  L  
Sbjct: 176 TLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + ++M    + PD +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI  +    ++ ++
Sbjct: 349 YTALISXLCQEGRSVDA 365


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 164/305 (53%), Gaps = 17/305 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA----------VTYNT 50
           M   G +P+  T+ + ++ +C+EGR+ EA  ++++M E G  P A          V    
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 51  LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
           ++D  C  GN   A +   EM ++GI P   TYN +I       +  +AD +L+ M EK 
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           I PD +T++ LIN + +     +A  ++ EM+   I PT +TY S+I    KQ+R+ +A 
Sbjct: 121 INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAK 180

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           ++ ++  +KG  PD+V F+ LI+G+C    ++    +  EM R  +  + VTY TL+HG 
Sbjct: 181 RMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGF 240

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C+ G ++ A+ LL++M   G+ PD+I       T++ ++ GLC  +E   A  +L ++  
Sbjct: 241 CQVGDLDAAQDLLNEMISCGVAPDYI-------TFHCMLAGLCSKKELRKAFAILEDLQK 293

Query: 291 KGITP 295
             + P
Sbjct: 294 SEVCP 298



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 154/284 (54%), Gaps = 17/284 (5%)

Query: 36  MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
           M E G  P  VT+NTL++  C +G +  A +  D MV++G  P A   + +  ++++   
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 96  MVE----------ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
           +V+          A ++  EM EKGI P+ +TYN +I+ +C  G    A  L   MI K 
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
           I P ++T+++LI    K+ ++ EA+++++  L   + P  + +N++IDG C    ++ A 
Sbjct: 121 INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAK 180

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            +L  M      PD VT++TL++G C+  +V+    +  +M RRGI  + +       TY
Sbjct: 181 RMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTV-------TY 233

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
             LI G C+  + D A++LL EM+S G+ PD  T+  ++ G+ S
Sbjct: 234 TTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCS 277



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 137/258 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    ++ D     + V  +CK+G    A  +  +M E G+ P  +TYN +ID +C+ G 
Sbjct: 46  MGQSHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGR 105

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      M+++ I P   T++ LI+  + ERK+ EA+++ KEM    I P +ITYN 
Sbjct: 106 WSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNS 165

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+      A  + D M  KG  P ++T+++LI    K  R+    ++F     +G
Sbjct: 166 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 225

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++ + V +  LI G C  G+++ A  LL EM    V PD +T++ ++ G C + ++ +A 
Sbjct: 226 IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAF 285

Query: 241 RLLDQMKRRGIKPDHISF 258
            +L+ +++  + P  I F
Sbjct: 286 AILEDLQKSEVCPRLIFF 303



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 32/211 (15%)

Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
           M E G  P+ +T+N L+N  CR G   +A +L D M+ +G QP  +  + +         
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHI--------- 51

Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
                             D+V+  A++D  C +GN   A +L  EM    + P+ +TYN 
Sbjct: 52  ----------------KADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNC 95

Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
           ++   C  G+  +A +LL  M  + I PD +       T++ALI    K ++   AEE+ 
Sbjct: 96  MIDSFCHSGRWSDADQLLRHMIEKQINPDIV-------TFSALINAFVKERKVSEAEEIY 148

Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           +EM+   I P   TY S+I+G    D+  ++
Sbjct: 149 KEMLRWSIFPTTITYNSMIDGFCKQDRVDDA 179


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 158/293 (53%), Gaps = 7/293 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+ YTY   V  +CKEG+++EA  +L  M +  + P  +TY+TL+DGY     
Sbjct: 260 MVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A    + M   G+ P   +Y +LI+     + + EA ++ KEM +K +VP  +TY+ 
Sbjct: 320 LKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G     + L DEM  +GI   ++TY SLI  L K   +  A  LF     +G
Sbjct: 380 LIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQG 439

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P    F  L+DG C  G ++ A    +++     H D   YN +++G C+QG +EEA 
Sbjct: 440 IRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEAL 499

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
            +L +M+  G  P+ +       T++ +I  L K  E D AE+LLR+M+ +G+
Sbjct: 500 TMLSKMEENGCVPNAV-------TFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 164/306 (53%), Gaps = 7/306 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G++ D  +YG+ ++G+CK G    A +++ ++      P    YNT+ID  C    + 
Sbjct: 157 AQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVS 216

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A+    EM  +GI     TY  LI+   +  K+ EA  +L EM  K I P+  TYNIL+
Sbjct: 217 EAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +  C+ G  K+A ++   M+   ++P ++TY++L+        + +A  +F      G+ 
Sbjct: 277 DALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVT 336

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+  +  LI+G C N  ++ A +L KEM +  + P  VTY++L+ G C+ G++     L
Sbjct: 337 PDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDL 396

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           +D+M+ RGI  + I       TYN+LI GLCKN   D A  L  +M  +GI P   T+  
Sbjct: 397 IDEMRDRGIPANVI-------TYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTI 449

Query: 303 LIEGIA 308
           L++G+ 
Sbjct: 450 LLDGLC 455



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 159/303 (52%), Gaps = 7/303 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           R  +P+   Y + +  +CK   + EA  +  +M   G+    VTY TLI G+C    L+ 
Sbjct: 193 RLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKE 252

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A    +EMV + I P   TYN+L+  L  E K+ EA ++L  M +  + PD ITY+ L++
Sbjct: 253 AIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMD 312

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY      KKA  + + M   G+ P + +YT LI    K   + EA  LF+    K M+P
Sbjct: 313 GYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVP 372

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
            IV +++LIDG C +G I   + L+ EM    +  + +TYN+L+ G C+ G ++ A  L 
Sbjct: 373 GIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALF 432

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
           ++MK +GI+       P   T+  L+ GLCK      A+E  +++++KG   D   Y  +
Sbjct: 433 NKMKDQGIR-------PCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVM 485

Query: 304 IEG 306
           I G
Sbjct: 486 ING 488



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 125/259 (48%), Gaps = 7/259 (2%)

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
           N++ A S  + M+     P    +N ++      +    A  +   +  KGI PD IT N
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           ILIN +C  G     FS+  +++ +G QP  +T+T+LI  L  + ++ +A    +  LA+
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQ 158

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+  D V +  LI+G C  G+   A  L++++D     P+   YNT++   C+   V EA
Sbjct: 159 GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEA 218

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L  +M  +GI  D +       TY  LI G C   +   A  LL EMV K I P+  T
Sbjct: 219 YGLFSEMTAKGISADVV-------TYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYT 271

Query: 300 YFSLIEGIASVDKAAESSN 318
           Y  L++ +    K  E+ N
Sbjct: 272 YNILVDALCKEGKVKEAKN 290



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 104/182 (57%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P   TY S + G+CK GR+     ++++M++ G+    +TYN+LIDG C  G+
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGH 424

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A +  ++M  QGI P + T+ +L+  L    ++ +A +  +++  KG   D   YN+
Sbjct: 425 LDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNV 484

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G  ++A ++  +M   G  P  +T+  +I  L K++   +A++L    + +G
Sbjct: 485 MINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRG 544

Query: 181 ML 182
           +L
Sbjct: 545 LL 546


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 162/331 (48%), Gaps = 23/331 (6%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            MK  G  PD +TY   +  M K  R+EE  R+  +M   G   T VTYNT+I G      
Sbjct: 799  MKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKR 858

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            LE A      ++ +G  PT  TY  L+  LL   KMV+A+++  EM E G  P+   YNI
Sbjct: 859  LEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNI 918

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            L+NG+   GN +    + ++M+ +GI P + +YT LI  L    R+ +    F   L  G
Sbjct: 919  LLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELG 978

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            + PD++++N LIDG   +  IE A  L  EM +  + P+  TYN+L+    + GK  EA 
Sbjct: 979  LEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAA 1038

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYN-----------------------ALIQGLCKNQE 277
            ++ +++  +G KP+  ++N     Y+                       ALI GL     
Sbjct: 1039 QMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLVDENL 1098

Query: 278  GDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
             ++AE L  EM  +G  PD  TY  +++ I 
Sbjct: 1099 INIAEGLFAEMKRRGCGPDQFTYNLILDAIG 1129



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 159/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G   +  +Y + V  +C+ GRL+EA  + ++MKE G+ P   +YN+LI G+     
Sbjct: 344 MVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADM 403

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            + A    + M   G  P   T+ L I+      + ++A    + M  KGIVPD    N 
Sbjct: 404 FDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANA 463

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++   R G    A  +  E+   G+ P  +TYT +I   SK ++  EA   F + +  G
Sbjct: 464 VLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETG 523

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            +PD++  N+LID     G    A+ L  ++  MK+ P   TYNTL+ G  R+GKV+E  
Sbjct: 524 CVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVM 583

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL++M        H    P  +TYN ++  L KN E + A  +L  M  KG TPD ++Y
Sbjct: 584 HLLEEMT-------HSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSY 636

Query: 301 FSLIEGIASVDKAAES 316
            +++ G+   ++  E+
Sbjct: 637 NTVMYGLIKEERFEEA 652



 Score =  148 bits (373), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 158/317 (49%), Gaps = 7/317 (2%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            + SRG+  + +     +  +CK  +  EA ++  + K  G+     +YN+LI G  ++  
Sbjct: 729  IASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENL 788

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            +++A     EM + G  P   TYNL++  +    ++ E   +  EM  KG     +TYN 
Sbjct: 789  IDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNT 848

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            +I+G  +    ++A  L+  ++ +G  PT  TY  L+  L K  +M++A+ LF   L  G
Sbjct: 849  IISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYG 908

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              P+  ++N L++GH   GN E    + ++M    ++PD  +Y  L+   C  G++ +  
Sbjct: 909  CKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGL 968

Query: 241  RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                Q+   G++PD I        YN LI GL K++  + A  L  EM  KGI P+  TY
Sbjct: 969  SYFRQLLELGLEPDLI-------IYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTY 1021

Query: 301  FSLIEGIASVDKAAESS 317
             SLI  +    KA+E++
Sbjct: 1022 NSLILHLGKAGKASEAA 1038



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 135/276 (48%), Gaps = 30/276 (10%)

Query: 1    MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
            + S G  P   TYG  + G+ K G++ +A  +  +M E G  P    YN L++G+   GN
Sbjct: 869  LMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGN 928

Query: 61   LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             E      ++MV+QGI P   +Y +LI  L    ++ +     +++ E G+ PD I YN+
Sbjct: 929  TENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNL 988

Query: 121  LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            LI+G  +    ++A  L +EM  KGI P + TY SLI  L K  +  EA Q++E  L KG
Sbjct: 989  LIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKG 1048

Query: 181  MLPDIVMFNALIDGHCTNGNIERAFS------------------------------LLKE 210
              P++  +NALI G+  +G+ + A++                              L  E
Sbjct: 1049 WKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLVDENLINIAEGLFAE 1108

Query: 211  MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            M R    PD+ TYN ++    +  ++EE  ++ +++
Sbjct: 1109 MKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEI 1144



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 162/354 (45%), Gaps = 44/354 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K   ++P + TY + +SG+ +EG+++E   +LE+M  +   P  +TYNT++D     G 
Sbjct: 554 LKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGE 613

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M ++G  P  S+YN +++ L+ E +  EA  M  +M +K + PD  T   
Sbjct: 614 VNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQM-KKILAPDYATLCT 672

Query: 121 LINGYCRCGNAKKAF-----------------SLHDEM-------------------IHK 144
           ++  + + G  K+A                  S H  M                     +
Sbjct: 673 ILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASR 732

Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
           GI         LI  L K  + +EA QLF  F   G+      +N+LI G      I+ A
Sbjct: 733 GILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIA 792

Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
             L  EM R+   PDE TYN ++    +  ++EE  R+  +M R+G       +  T +T
Sbjct: 793 EDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKG-------YESTYVT 845

Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           YN +I GL K++  + A +L   ++S+G +P   TY  L++G+    K  ++ N
Sbjct: 846 YNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAEN 899



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 151/319 (47%), Gaps = 12/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M + G  P+ YT+  F++   K G+  +A +  E MK  G+VP     N ++      G 
Sbjct: 414 MNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGR 473

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L MA     E+   G+ P   TY ++I       K  EA +   +M E G VPD +  N 
Sbjct: 474 LGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNS 533

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+   + G   +A+ L  ++    I+PT  TY +L+  L ++ ++ E   L E      
Sbjct: 534 LIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSI 593

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+++ +N ++D    NG +  A  +L  M      PD  +YNT+M+G  ++ + EEA 
Sbjct: 594 HPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAF 653

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-ITPDDNT 299
           R+  QMK+  + PD+        T   ++    KN     A   ++E + K     D ++
Sbjct: 654 RMFCQMKKI-LAPDYA-------TLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSS 705

Query: 300 YFSLIEGI---ASVDKAAE 315
           + SL+EGI   A V+K+ E
Sbjct: 706 FHSLMEGILNKAGVEKSIE 724



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 143/304 (47%), Gaps = 7/304 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ + V+ +  T+ +  SG+  +G L  A   L  M+E G+     TYN LI      G 
Sbjct: 134 MQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGF 193

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      MV+ GI P+  TY++L+     +R +     +L EM  +G+ P+  +Y I
Sbjct: 194 DAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTI 253

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I    +     +A+ +  +M   G +P ++T+T +I VL    R+ +A  +F    A  
Sbjct: 254 CIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASD 313

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD V +  L+D    +G+ +    +   M     + + V+Y  ++   C+ G+++EA 
Sbjct: 314 QKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEAL 373

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            + D+MK +GI P+  S       YN+LI G  K    D A EL   M + G +P+  T+
Sbjct: 374 AVFDEMKEKGISPEQYS-------YNSLISGFLKADMFDRALELFNHMNACGPSPNGYTH 426

Query: 301 FSLI 304
              I
Sbjct: 427 VLFI 430



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 42/353 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+  + YTY   +  + K G   EA  + + M E+G+ P+  TY+ L+  +  K +
Sbjct: 169 MREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRD 228

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++      +EM  +G+ P   +Y + I  L    +  EA  +L +M + G  PD +T+ +
Sbjct: 229 VDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTV 288

Query: 121 LINGYC--------------------------------RCGNA---KKAFSLHDEMIHKG 145
           +I   C                                +CG++   +    + + M+  G
Sbjct: 289 VIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADG 348

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
               +++YT+++  L +  R+ EA  +F+    KG+ P+   +N+LI G       +RA 
Sbjct: 349 YNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRAL 408

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L   M+     P+  T+   ++   + G+  +A +  + MK +GI PD  +        
Sbjct: 409 ELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAA-------A 461

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
           NA++  L ++    +A+ +  E+   G++PD  TY  +I+  +   KA E+ N
Sbjct: 462 NAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMN 514



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 132/292 (45%), Gaps = 7/292 (2%)

Query: 20  MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
           M   GR+ + +++ + M++  +     T+ T+  G   +G L  A      M + G+   
Sbjct: 118 MRAHGRVGDMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLN 177

Query: 80  ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
             TYN LI+ L+      EA ++ K M E GI P   TY++L+  + +  +      L +
Sbjct: 178 GYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLN 237

Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
           EM  +G++P + +YT  I VL +  R  EA Q+       G  PD+V    +I   C  G
Sbjct: 238 EMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAG 297

Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
            +  A  +  +M      PD VTY TL+      G  +    + + M   G       +N
Sbjct: 298 RLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADG-------YN 350

Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311
              ++Y A++  LC+    D A  +  EM  KGI+P+  +Y SLI G    D
Sbjct: 351 DNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKAD 402



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 147 QPTMLTYTS----LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
           QPT +  T     ++ ++    R+ +  Q+F+    + +  ++  F  +  G    G + 
Sbjct: 101 QPTAVHTTESCNYMLELMRAHGRVGDMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLR 160

Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
            A   L  M    +  +  TYN L++   + G   EA  +   M   GI       +P+ 
Sbjct: 161 SAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGI-------SPSV 213

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            TY+ L+    K ++ D    LL EM ++G+ P+  +Y
Sbjct: 214 RTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSY 251


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 168/309 (54%), Gaps = 7/309 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           PD   Y   V+G+C  G+L+EA + LE M E G+ P+ V +N++I  Y   G  + A   
Sbjct: 451 PDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKA 510

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              M+  G++P++ST + ++  L  + ++ EA D+L +M +KG+  + + + +L++GY +
Sbjct: 511 YKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFK 570

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G+   A SL  EM  +GI P  + +++ I  LSK   + EA + F     KG +P+  +
Sbjct: 571 VGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFV 630

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +N+LI G C  G +  A  L +EM +  + PD  T N +++G C++G+++ A     +M 
Sbjct: 631 YNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMH 690

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
             G+ PD +       TYN LI G CK  +   A+E L +M + G  PD  TY   I+G 
Sbjct: 691 HIGVTPDTV-------TYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGF 743

Query: 308 ASVDKAAES 316
            S  K + +
Sbjct: 744 CSSQKISRA 752



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 139/274 (50%), Gaps = 8/274 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+  +   +   + G  K G    A  +  +M+  G+ P A+ ++  IDG    G 
Sbjct: 549 MIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGL 608

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+    EM K+G +P    YN LIH L    K+ EA  + +EM +KG++PD  T NI
Sbjct: 609 VEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNI 668

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING+C+ G  K AF    EM H G+ P  +TY +LI    K   M+ AD+      A G
Sbjct: 669 IINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASG 728

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PDI  +N  I G C++  I RA ++L E+  + V P+ VTYNT+M+  C         
Sbjct: 729 WDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVCTD------- 781

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            +LD+      K   ++F P  +T N L+   CK
Sbjct: 782 -MLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCK 814



 Score =  157 bits (396), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 137/258 (53%), Gaps = 2/258 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++RG+ PD+  + +F+ G+ K G +EEA     +M + G VP    YN+LI G CN G 
Sbjct: 584 MEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGK 643

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A     EM ++G++P   T N++I+    E +M  A D   EM   G+ PD++TYN 
Sbjct: 644 LHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNT 703

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC+  +   A    ++M   G  P + TY   I       ++  A  + +  +A G
Sbjct: 704 LIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVG 763

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P+ V +N +++  CT+  ++RA  L  ++ +M   P+ VT N L+   C+QG  E+A 
Sbjct: 764 VVPNTVTYNTMMNAVCTD-MLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQGMPEKA- 821

Query: 241 RLLDQMKRRGIKPDHISF 258
            +  Q   + ++ D I +
Sbjct: 822 LIWGQKLNKLLRADFIGY 839



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 142/292 (48%), Gaps = 8/292 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ P S T  S + G+ K+GRL+EA  +L +M + GL    V +  L+DGY   G+   A
Sbjct: 518 GLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGA 577

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
            S   EM  +GI P A  ++  I  L     + EA +   EM +KG VP++  YN LI+G
Sbjct: 578 HSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHG 637

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C CG   +A  L  EM  KG+ P + T   +I    K+ RM  A   F      G+ PD
Sbjct: 638 LCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPD 697

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V +N LI G+C   ++  A   L +M      PD  TYN  + G C   K+  A  +LD
Sbjct: 698 TVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLD 757

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           ++   G+ P+ +       TYN ++  +C +   D A  L  +++     P+
Sbjct: 758 ELIAVGVVPNTV-------TYNTMMNAVCTDML-DRAMVLTAKLLKMAFVPN 801



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 159/338 (47%), Gaps = 28/338 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +PD Y Y   ++     GR  +A   L  M +NG  P+ +T++T+I  +CN+GN+  A  
Sbjct: 310 EPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARK 369

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             + + + G+ P  + YN L+      R + +A+ + +EM +KGI PD  T+NIL+ G  
Sbjct: 370 IFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNY 429

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G    ++ L  +     + P    Y   +  L    ++ EA Q  E+ L KGM P +V
Sbjct: 430 KYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVV 489

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN++I  +   G  + A    K M    + P   T ++++ G  ++G+++EAR LL +M
Sbjct: 490 AFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKM 549

Query: 247 KRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEG 278
             +G+  + ++F                             P  + ++A I GL K    
Sbjct: 550 IDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLV 609

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + A E   EM  KG  P++  Y SLI G+ +  K  E+
Sbjct: 610 EEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEA 647



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 149/342 (43%), Gaps = 28/342 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P S         + + G      ++L  M  +G  P    +N +I  +C KG 
Sbjct: 234 MREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGY 293

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L +A S    M K    P    YN+LI+   +  +  +A   L  M + G  P  IT++ 
Sbjct: 294 LRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFST 353

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I  +C  GN  +A  + + +   G+ P +  Y +L+    K   + +A+ L+E    KG
Sbjct: 354 IITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKG 413

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD   FN L+ G+   G    ++ L ++     + PD   Y+  + G C  G+++EA 
Sbjct: 414 IAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAM 473

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
           + L+ M  +G+ P  ++FN                            P+  T ++++ GL
Sbjct: 474 QFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGL 533

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
            K      A +LL +M+ KG+  +   +  L++G   V   A
Sbjct: 534 SKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTA 575



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 130/279 (46%), Gaps = 7/279 (2%)

Query: 28  EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
           E+  +L +M+E G+ P++   + L       G+    +     M++ G  P    +N++I
Sbjct: 226 ESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMI 285

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
                +  +  A+ +L  M +    PD   YNILIN Y   G    A      MI  G +
Sbjct: 286 LCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCK 345

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           P+++T++++I     +  ++EA ++FE     G+ P++ M+N L+ G+    ++ +A  L
Sbjct: 346 PSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANML 405

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
            +EM    + PD  T+N L+ G  + GK  ++  L        + PD          Y+ 
Sbjct: 406 YEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCS-------LYDV 458

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
            + GLC   + D A + L +M+ KG+ P    + S+I  
Sbjct: 459 SVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAA 497


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 9/305 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MKS+ +  D Y Y S ++  C+ G +  AS + ++   NG+ P   TY  LI+G+C  G 
Sbjct: 163 MKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQ 222

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYN 119
           +E A     +M  +G+      +N +I +    + MV+    +K + EK GI  D  TYN
Sbjct: 223 MEAAEMLVTDMQVRGVGINQIVFNTMI-DGYCRKNMVDKALEIKMIMEKMGIELDVYTYN 281

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L  G  R     +A +L   MI KG++P  ++YT+LI +   +  M+EA +LF      
Sbjct: 282 TLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGN 341

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P +V +N ++DG+   G+I  A     EM++  + PD  +Y  L+HG C  GKV+ A
Sbjct: 342 GAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVA 401

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
            RL ++MK+RG KP+ ++       Y ALI GL K    + A +L   M+  G+TPDD  
Sbjct: 402 LRLFEEMKQRGSKPNLVA-------YTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDAL 454

Query: 300 YFSLI 304
           Y +L+
Sbjct: 455 YSALV 459



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 166/330 (50%), Gaps = 31/330 (9%)

Query: 8   PDSYTYGS---FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           PDS T  S    V G CK GR+  A ++L++M  +G+   A+ YN+L+D Y  + + +  
Sbjct: 62  PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRV 121

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                 M  +GI PT  TY +L+  L   R + + + + +EM  K +  D   Y+ +IN 
Sbjct: 122 AEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 181

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YCR GN ++A  + DE +  GI+P   TY +LI    K  +M  A+ L  +   +G+  +
Sbjct: 182 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 241

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            ++FN +IDG+C    +++A  +   M++M +  D  TYNTL  G  R  +++EA+ LL 
Sbjct: 242 QIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR 301

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M  +G++P+H+S+                             P+ +TYN ++ G  K  
Sbjct: 302 IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKG 361

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
               AE    EM  KG+ PD  +Y +L+ G
Sbjct: 362 SIREAERFKNEMEKKGLVPDIYSYAALVHG 391



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ +G+ PD Y+Y + V G C  G+++ A R+ E+MK+ G  P  V Y  LI G   +G 
Sbjct: 373 MEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGR 432

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
            E AF   D M+  G+ P  + Y+ L+  L  ++K
Sbjct: 433 SEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKK 467


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 169/332 (50%), Gaps = 27/332 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ + V  D   Y + + G+CK+  + +A  +  +M    + PT VT N+LI GYC  G 
Sbjct: 202 IEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQ 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN- 119
            + AF    EMV + I P   T+N+L+  L  E K+ EA   +  M ++G++PD +TY+ 
Sbjct: 262 FKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSS 321

Query: 120 -------------------ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
                              I+ING+C+     KA SL  EM  + I P  +TY SLI  L
Sbjct: 322 LMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGL 381

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            K  R+  A +L +     G   DI+ +N+LID  C N ++++A +L+K++    +  D 
Sbjct: 382 CKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDM 441

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280
            TYN L+ G C+QG++++A+ +   +  +G       +N T  TY  +I GLC     + 
Sbjct: 442 YTYNILIDGLCKQGRLKDAQVIFQDLLIKG-------YNLTVWTYTIMINGLCLEGLLNE 494

Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
           AE LL +M   G  PD  T  ++I  +   DK
Sbjct: 495 AETLLSKMEDNGCVPDAVTCETIIRALFENDK 526



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 156/314 (49%), Gaps = 13/314 (4%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P    +G  +S + K         +  Q++ NG+ P  V+ + LI+ YC+ G +  AFS 
Sbjct: 69  PSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSI 128

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
             +++K G  P   T   L+    +  K+ EA      +   G   + ++Y  LING C+
Sbjct: 129 FAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCK 188

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  + A  +  ++  K +   ++ Y+++I  L K   + +A +L+   + K + P +V 
Sbjct: 189 IGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVT 248

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
            N+LI G+C  G  + AF LL+EM    ++PD  T+N L+   C++GK++EA+  +  M 
Sbjct: 249 LNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMM 308

Query: 248 RRGIKPDHISF-------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
           + G+ PD +++             N  +  Y+ +I G CK +  D A  L  EM  + I 
Sbjct: 309 KEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIA 368

Query: 295 PDDNTYFSLIEGIA 308
           PD  TY SLI+G+ 
Sbjct: 369 PDTVTYNSLIDGLC 382



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 164/325 (50%), Gaps = 29/325 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT-AVTYNTLIDGYCNKGNLEM 63
           G   +  +YG+ ++G+CK G    A +ML Q+ E  LV T  V Y+T+IDG C    +  
Sbjct: 171 GFHFNQVSYGTLINGLCKIGETRAALQMLRQI-EGKLVSTDVVMYSTIIDGLCKDKLVND 229

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A+    EM+ + I PT  T N LI+   +  +  EA  +L+EM  K I PD  T+NIL++
Sbjct: 230 AYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVD 289

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL--------------------IFVLSKQ 163
             C+ G  K+A S    M+ +G+ P ++TY+SL                    I    K 
Sbjct: 290 ALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKI 349

Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
             + +A  LF     + + PD V +N+LIDG C +G I  A+ L+ EM       D +TY
Sbjct: 350 KMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITY 409

Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
           N+L+   C+   V++A  L+ ++K +GI+ D         TYN LI GLCK      A+ 
Sbjct: 410 NSLIDALCKNHHVDKAIALVKKIKDQGIQLD-------MYTYNILIDGLCKQGRLKDAQV 462

Query: 284 LLREMVSKGITPDDNTYFSLIEGIA 308
           + ++++ KG      TY  +I G+ 
Sbjct: 463 IFQDLLIKGYNLTVWTYTIMINGLC 487



 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 158/332 (47%), Gaps = 30/332 (9%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G++P+  +    ++  C  G++  A  +  ++ + G  P  +T  TL+ G+C    ++ A
Sbjct: 101 GIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEA 160

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F D ++  G      +Y  LI+ L    +   A  ML+++  K +  D + Y+ +I+G
Sbjct: 161 LHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDG 220

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A+ L+ EMI K I PT++T  SLI+      +  EA  L    + K + PD
Sbjct: 221 LCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPD 280

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR--- 241
           +  FN L+D  C  G I+ A S +  M +  V PD VTY++LM G C   +V +A+    
Sbjct: 281 VYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYS 340

Query: 242 -----------------LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
                            L  +M+ R I PD +       TYN+LI GLCK+     A EL
Sbjct: 341 IVINGFCKIKMVDKALSLFYEMRCRRIAPDTV-------TYNSLIDGLCKSGRISYAWEL 393

Query: 285 LREMVSKGITPDDNTYFSLIEGIAS---VDKA 313
           + EM   G   D  TY SLI+ +     VDKA
Sbjct: 394 VDEMRDSGQPADIITYNSLIDALCKNHHVDKA 425



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 138/271 (50%), Gaps = 20/271 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC---- 56
           M  + + PD YT+   V  +CKEG+++EA   +  M + G++P  VTY++L+DGYC    
Sbjct: 272 MVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNE 331

Query: 57  -NKGN---------------LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100
            NK                 ++ A S   EM  + I P   TYN LI  L    ++  A 
Sbjct: 332 VNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAW 391

Query: 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160
           +++ EM + G   D ITYN LI+  C+  +  KA +L  ++  +GIQ  M TY  LI  L
Sbjct: 392 ELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGL 451

Query: 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220
            KQ R+ +A  +F++ L KG    +  +  +I+G C  G +  A +LL +M+     PD 
Sbjct: 452 CKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDA 511

Query: 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
           VT  T++       K E A +LL +M  RG+
Sbjct: 512 VTCETIIRALFENDKNERAEKLLREMIARGL 542



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 101/182 (55%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ R + PD+ TY S + G+CK GR+  A  ++++M+++G     +TYN+LID  C   +
Sbjct: 362 MRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHH 421

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A +   ++  QGI     TYN+LI  L  + ++ +A  + +++  KG      TY I
Sbjct: 422 VDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTI 481

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C  G   +A +L  +M   G  P  +T  ++I  L + ++   A++L    +A+G
Sbjct: 482 MINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDKNERAEKLLREMIARG 541

Query: 181 ML 182
           +L
Sbjct: 542 LL 543


>gi|8920567|gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 174/355 (49%), Gaps = 49/355 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PDS TY     G    G +  A  ++  M + GL P  +TY  L+ G C  GN
Sbjct: 296 MNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN 355

Query: 61  LEMAFSFRDEMVKQG-----IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           ++M      +M+ +G     I+P +    +++  L    ++ EA  +  +M   G+ PD 
Sbjct: 356 IDMGLVLLKDMLSRGFELNSIIPCS----VMLSGLCKTGRIDEALSLFNQMKADGLSPDL 411

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + Y+I+I+G C+ G    A  L+DEM  K I P   T+ +L+  L ++  ++EA  L ++
Sbjct: 412 VAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDS 471

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            ++ G   DIV++N +IDG+  +G IE A  L K +    + P   T+N+L++G C+   
Sbjct: 472 LISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQN 531

Query: 236 VEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNA 267
           + EAR++LD +K  G+ P  +S+                             PT +TY+ 
Sbjct: 532 IAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSV 591

Query: 268 LIQGLCKNQEGDLAEELLRE------------MVSKGITPDDNTYFSLIEGIASV 310
           + +GLC+  + +    +LRE            M S+GI PD  TY ++I+ +  V
Sbjct: 592 IFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRV 646



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 43/344 (12%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           + +TY + V G+C++ +LE+A   L   +   + P+ V++N+++ GYC  G ++MA SF 
Sbjct: 199 NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFF 258

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             ++K G++P+  ++N+LI+ L +   + EA ++  +M + G+ PDS+TYNIL  G+   
Sbjct: 259 CTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLL 318

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIF------------------------------ 158
           G    A+ +  +M+ KG+ P ++TYT L+                               
Sbjct: 319 GMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIP 378

Query: 159 ------VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
                  L K  R+ EA  LF    A G+ PD+V ++ +I G C  G  + A  L  EM 
Sbjct: 379 CSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMC 438

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
             ++ P+  T+  L+ G C++G + EAR LLD +   G   D +        YN +I G 
Sbjct: 439 DKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIV-------LYNIVIDGY 491

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K+   + A EL + ++  GITP   T+ SLI G       AE+
Sbjct: 492 AKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEA 535



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 159/321 (49%), Gaps = 20/321 (6%)

Query: 1   MKSRGVQPDSYTYGS-FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M SRG + +S    S  +SG+CK GR++EA  +  QMK +GL P  V Y+ +I G C  G
Sbjct: 366 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 425

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +MA    DEM  + I+P + T+  L+  L  +  ++EA  +L  +   G   D + YN
Sbjct: 426 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 485

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I+GY + G  ++A  L   +I  GI P++ T+ SLI+   K   + EA ++ +     
Sbjct: 486 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLY 545

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK---- 235
           G+ P +V +  L+D +   GN +    L +EM    + P  VTY+ +  G CR  K    
Sbjct: 546 GLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENC 605

Query: 236 --------VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
                    E+ ++ L  M+  GI PD I       TYN +IQ LC+ +    A   L  
Sbjct: 606 NHVLRERIFEKCKQGLRDMESEGIPPDQI-------TYNTIIQYLCRVKHLSGAFVFLEI 658

Query: 288 MVSKGITPDDNTYFSLIEGIA 308
           M S+ +     TY  LI+ + 
Sbjct: 659 MKSRNLDASSATYNILIDSLC 679



 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 154/343 (44%), Gaps = 54/343 (15%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+S T+G+ + G+C++G L EA  +L+ +  +G     V YN +IDGY   G 
Sbjct: 437 MCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGC 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      +++ GI P+ +T+N LI+     + + EA  +L  +   G+ P  ++Y  
Sbjct: 497 IEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTT 556

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK-----------QNRMIE- 168
           L++ Y  CGN K    L  EM  +GI PT +TY+ +   L +           + R+ E 
Sbjct: 557 LMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEK 616

Query: 169 ADQLFENFLAKGMLPDIVMFNA-----------------------------------LID 193
             Q   +  ++G+ PD + +N                                    LID
Sbjct: 617 CKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILID 676

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C  G I +A S +  +    V   +  Y TL+   C +G  E A +L  Q+  RG   
Sbjct: 677 SLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRG--- 733

Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
               FN +   Y+A+I  LC+    + ++     M+S+GI+PD
Sbjct: 734 ----FNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPD 772



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ------------MKENGLVPTAVTY 48
           MK+ G+ P + TY     G+C+  + E  + +L +            M+  G+ P  +TY
Sbjct: 577 MKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITY 636

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           NT+I   C   +L  AF F + M  + +  +++TYN+LI  L +   + +AD  +  + E
Sbjct: 637 NTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQE 696

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168
           + +      Y  LI  +C  G+ + A  L  +++H+G   ++  Y+++I  L +++ + E
Sbjct: 697 QNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNE 756

Query: 169 ADQLFENFLAKGMLPDIVMFNALI 192
           +   F   L++G+ PD+ +   +I
Sbjct: 757 SKFFFCLMLSQGISPDLDICEVMI 780


>gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 798

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 174/355 (49%), Gaps = 49/355 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PDS TY     G    G +  A  ++  M + GL P  +TY  L+ G C  GN
Sbjct: 283 MNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN 342

Query: 61  LEMAFSFRDEMVKQG-----IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           ++M      +M+ +G     I+P +    +++  L    ++ EA  +  +M   G+ PD 
Sbjct: 343 IDMGLVLLKDMLSRGFELNSIIPCS----VMLSGLCKTGRIDEALSLFNQMKADGLSPDL 398

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + Y+I+I+G C+ G    A  L+DEM  K I P   T+ +L+  L ++  ++EA  L ++
Sbjct: 399 VAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDS 458

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            ++ G   DIV++N +IDG+  +G IE A  L K +    + P   T+N+L++G C+   
Sbjct: 459 LISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQN 518

Query: 236 VEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNA 267
           + EAR++LD +K  G+ P  +S+                             PT +TY+ 
Sbjct: 519 IAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSV 578

Query: 268 LIQGLCKNQEGDLAEELLRE------------MVSKGITPDDNTYFSLIEGIASV 310
           + +GLC+  + +    +LRE            M S+GI PD  TY ++I+ +  V
Sbjct: 579 IFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRV 633



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 43/344 (12%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           + +TY + V G+C++ +LE+A   L   +   + P+ V++N+++ GYC  G ++MA SF 
Sbjct: 186 NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFF 245

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             ++K G++P+  ++N+LI+ L +   + EA ++  +M + G+ PDS+TYNIL  G+   
Sbjct: 246 CTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLL 305

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIF------------------------------ 158
           G    A+ +  +M+ KG+ P ++TYT L+                               
Sbjct: 306 GMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIP 365

Query: 159 ------VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
                  L K  R+ EA  LF    A G+ PD+V ++ +I G C  G  + A  L  EM 
Sbjct: 366 CSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMC 425

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
             ++ P+  T+  L+ G C++G + EAR LLD +   G   D +        YN +I G 
Sbjct: 426 DKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIV-------LYNIVIDGY 478

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K+   + A EL + ++  GITP   T+ SLI G       AE+
Sbjct: 479 AKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEA 522



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 159/321 (49%), Gaps = 20/321 (6%)

Query: 1   MKSRGVQPDSYTYGS-FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M SRG + +S    S  +SG+CK GR++EA  +  QMK +GL P  V Y+ +I G C  G
Sbjct: 353 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 412

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +MA    DEM  + I+P + T+  L+  L  +  ++EA  +L  +   G   D + YN
Sbjct: 413 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 472

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I+GY + G  ++A  L   +I  GI P++ T+ SLI+   K   + EA ++ +     
Sbjct: 473 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLY 532

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK---- 235
           G+ P +V +  L+D +   GN +    L +EM    + P  VTY+ +  G CR  K    
Sbjct: 533 GLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENC 592

Query: 236 --------VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
                    E+ ++ L  M+  GI PD I       TYN +IQ LC+ +    A   L  
Sbjct: 593 NHVLRERIFEKCKQGLRDMESEGIPPDQI-------TYNTIIQYLCRVKHLSGAFVFLEI 645

Query: 288 MVSKGITPDDNTYFSLIEGIA 308
           M S+ +     TY  LI+ + 
Sbjct: 646 MKSRNLDASSATYNILIDSLC 666



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 54/323 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+S T+G+ + G+C++G L EA  +L+ +  +G     V YN +IDGY   G 
Sbjct: 424 MCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGC 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      +++ GI P+ +T+N LI+     + + EA  +L  +   G+ P  ++Y  
Sbjct: 484 IEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTT 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPT------------------------------- 149
           L++ Y  CGN K    L  EM  +GI PT                               
Sbjct: 544 LMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEK 603

Query: 150 ----------------MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
                            +TY ++I  L +   +  A    E   ++ +      +N LID
Sbjct: 604 CKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILID 663

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C  G I +A S +  +    V   +  Y TL+   C +G  E A +L  Q+  RG   
Sbjct: 664 SLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRG--- 720

Query: 254 DHISFNPTRLTYNALIQGLCKNQ 276
               FN +   Y+A+I  LC+  
Sbjct: 721 ----FNVSIRDYSAVINRLCRRH 739



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ------------MKENGLVPTAVTY 48
           MK+ G+ P + TY     G+C+  + E  + +L +            M+  G+ P  +TY
Sbjct: 564 MKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITY 623

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           NT+I   C   +L  AF F + M  + +  +++TYN+LI  L +   + +AD  +  + E
Sbjct: 624 NTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQE 683

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           + +      Y  LI  +C  G+ + A  L  +++H+G   ++  Y+++I  L +++ M
Sbjct: 684 QNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLM 741


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 169/319 (52%), Gaps = 11/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  R   P  +TY S V G  K GRL+EA   L++  E G +P AVTY ++IDG C  G 
Sbjct: 280 MSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGR 339

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E       EM  +G  P A TY  LI   +  + + +A  + ++M + G V  ++TYNI
Sbjct: 340 VEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNI 399

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++G C+ G   +A++    M  +G   T++TY++L+     +  +  A +LF   L +G
Sbjct: 400 ILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG 459

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-RQGKVEEA 239
             P++V +N +I G C  G + +A+   +++ + ++ PD  T+N+ +HG C R   V + 
Sbjct: 460 CEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDG 519

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
             L + M  +G  P+  S       Y+ L+ G+C+    ++  E+  EMVS+G+ PD   
Sbjct: 520 VELFESMVSQGTSPNLHS-------YSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVV 572

Query: 300 YFSLIEGIA---SVDKAAE 315
           + +LI  +     VD+A E
Sbjct: 573 FNTLIRWLCIAGRVDEALE 591



 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
            PD   +   ++G+C+E RL+EA  +LE+    G  P  VTYN  IDG C    ++ AF 
Sbjct: 38  SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 97

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M ++  +PT  TY  L+  LL   ++ EA  +L++M EKG  P   TY ++I+G  
Sbjct: 98  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLS 157

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA----DQLFENFLAKGML 182
           + G  ++A  +  +M+  G +P    YT+LI  L+K  ++ EA    +Q+ EN  A+G+ 
Sbjct: 158 KAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVE 217

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           PD+V+ N +I   C +GN+E A +   E+D   +     T+N L+   C+  + EEA   
Sbjct: 218 PDVVIHNLVIRQLCASGNLEDALAYFDELDD-SLDLTHFTFNPLVAALCKAERTEEAIAF 276

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
           + +M  R          PT  TY +L+ G  K    D A   L+E V +G  PD  TY S
Sbjct: 277 VKKMSER-------RCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTS 329

Query: 303 LIEGIASVDKAAE 315
           +I+G+  + +  E
Sbjct: 330 IIDGLCKLGRVEE 342



 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 160/300 (53%), Gaps = 10/300 (3%)

Query: 11  YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
           +T+   V+ +CK  R EEA   +++M E    PT  TY +L+DG+   G L+ A     E
Sbjct: 255 FTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKE 314

Query: 71  MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
            V++G +P A TY  +I  L    ++ E  +   EM  +G  PD++TY  LI+G+ +   
Sbjct: 315 AVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKM 374

Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
             KA  ++ +M+  G   + +TY  ++  L K  R+ EA   F     +G +  +V ++A
Sbjct: 375 IPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSA 434

Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
           L+DG C+ GN+  A  L + M      P+ V+YN ++ G CR GK+ +A    +++ +R 
Sbjct: 435 LMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRR 494

Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQE--GDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + PD         T+N+ + GLC+  +  GD   EL   MVS+G +P+ ++Y  L++GI 
Sbjct: 495 LCPDV-------YTFNSFLHGLCQRLDTVGD-GVELFESMVSQGTSPNLHSYSILMDGIC 546



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 158/320 (49%), Gaps = 12/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV----PTAVTYNTLIDGYC 56
           M   G +PD++ Y + +SG+ K G+L+EA   L QM ENG      P  V +N +I   C
Sbjct: 172 MLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLC 231

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
             GNLE A ++ DE+    +  T  T+N L+  L    +  EA   +K+M E+   P   
Sbjct: 232 ASGNLEDALAYFDEL-DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLF 290

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
           TY  L++G+ + G   +A     E + +G  P  +TYTS+I  L K  R+ E  + F   
Sbjct: 291 TYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 350

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +G  PD V + ALIDG      I +A  + ++M +       VTYN ++ G C+ G+V
Sbjct: 351 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRV 410

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
            EA      M+ RG          T +TY+AL+ G C       A EL R M+ +G  P+
Sbjct: 411 AEAYATFLAMEERGCVA-------TVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPN 463

Query: 297 DNTYFSLIEGIASVDKAAES 316
             +Y  +I G+    K A++
Sbjct: 464 LVSYNIIIRGLCRAGKLAKA 483



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 153/320 (47%), Gaps = 12/320 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P + TY + V G+ K GRL+EA  +LEQM E G  PT  TY  +IDG    G 
Sbjct: 102 MDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGR 161

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE----KGIVPDSI 116
           +E A     +M+  G  P A  Y  LI  L    K+ EA   L +M E    +G+ PD +
Sbjct: 162 VEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVV 221

Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
            +N++I   C  GN + A +  DE+    +  T  T+  L+  L K  R  EA    +  
Sbjct: 222 IHNLVIRQLCASGNLEDALAYFDEL-DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKM 280

Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
             +   P +  + +L+DG    G ++ A   LKE       PD VTY +++ G C+ G+V
Sbjct: 281 SERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRV 340

Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           EE      +M+ RG +PD +       TY ALI G  K +    A  + R+M+  G    
Sbjct: 341 EEGCERFHEMRNRGYEPDAV-------TYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVS 393

Query: 297 DNTYFSLIEGIASVDKAAES 316
             TY  +++G+    + AE+
Sbjct: 394 TVTYNIILDGLCKAGRVAEA 413



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 159/296 (53%), Gaps = 9/296 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++RG +PD+ TY + + G  K   + +A R+  QM ++G V + VTYN ++DG C  G 
Sbjct: 350 MRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGR 409

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A++    M ++G + T  TY+ L+     E  +  A ++ + M ++G  P+ ++YNI
Sbjct: 410 VAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNI 469

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ-NRMIEADQLFENFLAK 179
           +I G CR G   KA+   ++++ + + P + T+ S +  L ++ + + +  +LFE+ +++
Sbjct: 470 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQ 529

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G  P++  ++ L+DG C  G +E    +  EM    V PD V +NTL+   C  G+V+EA
Sbjct: 530 GTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEA 589

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
             +  +++RR          P   +Y +L+  L + +  + A  L   M  +G  P
Sbjct: 590 LEVFRELERRS--------APDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAP 637



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 2/256 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G    + TY   + G+CK GR+ EA      M+E G V T VTY+ L+DG+C++GN
Sbjct: 385 MLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGN 444

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M+ +G  P   +YN++I  L    K+ +A    +++ ++ + PD  T+N 
Sbjct: 445 VSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNS 504

Query: 121 LINGYC-RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            ++G C R         L + M+ +G  P + +Y+ L+  + +   +    ++F   +++
Sbjct: 505 FLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSR 564

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G+ PD+V+FN LI   C  G ++ A  + +E++R +  PD  +Y +L+    R  ++EEA
Sbjct: 565 GVAPDVVVFNTLIRWLCIAGRVDEALEVFRELER-RSAPDAWSYWSLLDALSRCERMEEA 623

Query: 240 RRLLDQMKRRGIKPDH 255
           R L   MK +G  P H
Sbjct: 624 RLLSFHMKLQGCAPRH 639



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 10/135 (7%)

Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
           L D  +  AL++G C  G ++RA  LL   D M   PD V +  +++G CR+ +++EA  
Sbjct: 6   LVDTRVCTALLNGLCKTGQLDRAMLLL---DEMPCSPDMVAFTVVINGLCREKRLDEAFS 62

Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
           +L++  R G +PD++       TYN  I GLCK +  D A +LL++M  K   P   TY 
Sbjct: 63  VLERAVRAGCEPDYV-------TYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYT 115

Query: 302 SLIEGIASVDKAAES 316
           +L++G+    +  E+
Sbjct: 116 ALVDGLLKAGRLDEA 130


>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 376

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 158/291 (54%), Gaps = 7/291 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G   DS TYG  V G CK G ++++  +LE  ++ G V  A  Y+ +I+G C + N
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      M+K G  P    YN LI+ L+   K  +A  + +EMG     P  ITYN 
Sbjct: 145 LDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+     +A++L  E++ KG+ P ++TY+ L+  L   +++  A QL+    +KG
Sbjct: 205 LISGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD+ M N LI G C+ G ++ A SL  +M+R K  P+ V++NTLM G  + G +  A 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRRKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
            +  ++ R G++PD IS+N T       ++GLC       A   L + V+K
Sbjct: 325 VIWARILRNGLEPDIISYNIT-------LKGLCSCNRISDAILFLHDAVTK 368



 Score =  147 bits (371), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 152/292 (52%), Gaps = 8/292 (2%)

Query: 21  CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
           C+ G ++ A R+ +++ E+ + P AV YN +++GY     ++  F   + M  +G   + 
Sbjct: 1   CESGDIDGAERVFKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 81  STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
           S++N+++  L    K+ E   + + M E G V DSITY IL++G+C+ G   K+  + + 
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 119

Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
              KG       Y+++I  L K+  +  A  +    +  G  P+I ++N LI+G      
Sbjct: 120 AEQKGGVLDAFAYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASK 179

Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
            E A  + +EM  M   P  +TYNTL+ G C++    EA  L+ ++  +G+ P  I    
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLISGLCKKEMFGEAYNLVKELLDKGLDPGVI---- 235

Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
              TY+ L++GLC + + + A +L  ++ SKG  PD   +  LI G+ SV K
Sbjct: 236 ---TYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGK 284



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 10/221 (4%)

Query: 99  ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
           A+ + KE+ E  + PD++ YN ++NGY R    K  F L + M  +G   ++ ++  ++ 
Sbjct: 9   AERVFKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMR 67

Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
            L    ++ E   ++E     G + D + +  L+ G C NG I+++  +L+  ++     
Sbjct: 68  GLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL 127

Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQE 277
           D   Y+ +++G C++  ++ A  +L  M + G KP+ H+        YN LI GL    +
Sbjct: 128 DAFAYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHV--------YNTLINGLVGASK 179

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
            + A  + REM +   +P   TY +LI G+   +   E+ N
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLISGLCKKEMFGEAYN 220


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 164/312 (52%), Gaps = 9/312 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV  + + Y   +   CK G +E+A ++L +M+   + P   TYNTLI  YC KG 
Sbjct: 197 MVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGM 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A S +D M   GI P   TYN LI+    E +M EA  + +++  K + P+ +TY  
Sbjct: 257 HYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDI--KDVTPNHVTYTS 314

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+GYCR  +  +A  L + M  KG+ PT++TY S++  L +  R+ +A+ L      + 
Sbjct: 315 LIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERK 374

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD V  N LI+ +C  G++  A  +  +M    +  D+ TY  L+HG C+  ++++A+
Sbjct: 375 IEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAK 434

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            LL  M   G       F+P+  TY+ L+   CK Q  +   +L  E+V +G+  D + Y
Sbjct: 435 ELLFGMMDAG-------FSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVY 487

Query: 301 FSLIEGIASVDK 312
            +LI     ++K
Sbjct: 488 RALIRRFCKIEK 499



 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ PD +TY S + G C+EGR+ EA ++   +K+  + P  VTY +LIDGYC   +
Sbjct: 267 MEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIKD--VTPNHVTYTSLIDGYCRVND 324

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A   ++ M ++G+ PT  TYN ++ +L    ++ +A+ +L EM E+ I PD++T N 
Sbjct: 325 LDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNT 384

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G+ + A  + D+M+  G++    TY +LI    K   + +A +L    +  G
Sbjct: 385 LINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAG 444

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P    ++ L+D +C   N E    L  E+ R  +  D   Y  L+   C+  K++ A+
Sbjct: 445 FSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQ 504

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+L  MK +GI  D +        Y +L  G  K  + ++  ++L EM  K +      Y
Sbjct: 505 RVLGLMKDKGIFGDSV-------VYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIY 557

Query: 301 FSLIEGIAS 309
            S     AS
Sbjct: 558 RSFNASYAS 566



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 153/308 (49%), Gaps = 30/308 (9%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
            EA ++ E M+ NG  P       L++        +  +    +MVK G++     YN+L
Sbjct: 153 HEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVL 212

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           +H       + +A+ +L EM  K + PD  TYN LI+ YC+ G   +A S+ D M   GI
Sbjct: 213 LHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGI 272

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P + TY SLI+   ++ RM EA QLF +   K + P+ V + +LIDG+C   +++ A  
Sbjct: 273 SPDIFTYNSLIYGFCREGRMREAVQLFRDI--KDVTPNHVTYTSLIDGYCRVNDLDEALR 330

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT----- 261
           L + M    ++P  +TYN+++   C  G++ +A  LL++M  R I+PD+++ N       
Sbjct: 331 LKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYC 390

Query: 262 -----------------------RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                                  + TY ALI G CK +E D A+ELL  M+  G +P   
Sbjct: 391 KIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYC 450

Query: 299 TYFSLIEG 306
           TY  L++ 
Sbjct: 451 TYSWLVDS 458



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++ D +TY + + G CK   +++A  +L  M + G  P+  TY+ L+D YC + N
Sbjct: 405 MVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQN 464

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E      DE+V++G+    S Y  LI       K+  A  +L  M +KGI  DS+ Y  
Sbjct: 465 EEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTS 524

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN----- 175
           L  GY + G       + DEM  K +  T+  Y S     +  N ++    LF N     
Sbjct: 525 LAYGYWKVGKVNVTSDILDEMYKKRLMITLKIYRSFNASYASDNSIL---SLFWNHVLER 581

Query: 176 -FLAKGMLPDI 185
             ++K +L D+
Sbjct: 582 RLMSKNILKDM 592


>gi|240254074|ref|NP_172820.4| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190928|gb|AEE29049.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 174/355 (49%), Gaps = 49/355 (13%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+PDS TY     G    G +  A  ++  M + GL P  +TY  L+ G C  GN
Sbjct: 283 MNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGN 342

Query: 61  LEMAFSFRDEMVKQG-----IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
           ++M      +M+ +G     I+P +    +++  L    ++ EA  +  +M   G+ PD 
Sbjct: 343 IDMGLVLLKDMLSRGFELNSIIPCS----VMLSGLCKTGRIDEALSLFNQMKADGLSPDL 398

Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
           + Y+I+I+G C+ G    A  L+DEM  K I P   T+ +L+  L ++  ++EA  L ++
Sbjct: 399 VAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDS 458

Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
            ++ G   DIV++N +IDG+  +G IE A  L K +    + P   T+N+L++G C+   
Sbjct: 459 LISSGETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQN 518

Query: 236 VEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNA 267
           + EAR++LD +K  G+ P  +S+                             PT +TY+ 
Sbjct: 519 IAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSV 578

Query: 268 LIQGLCKNQEGDLAEELLRE------------MVSKGITPDDNTYFSLIEGIASV 310
           + +GLC+  + +    +LRE            M S+GI PD  TY ++I+ +  V
Sbjct: 579 IFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITYNTIIQYLCRV 633



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 43/344 (12%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           + +TY + V G+C++ +LE+A   L   +   + P+ V++N+++ GYC  G ++MA SF 
Sbjct: 186 NEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFF 245

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
             ++K G++P+  ++N+LI+ L +   + EA ++  +M + G+ PDS+TYNIL  G+   
Sbjct: 246 CTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLL 305

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIF------------------------------ 158
           G    A+ +  +M+ KG+ P ++TYT L+                               
Sbjct: 306 GMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIP 365

Query: 159 ------VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
                  L K  R+ EA  LF    A G+ PD+V ++ +I G C  G  + A  L  EM 
Sbjct: 366 CSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMC 425

Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272
             ++ P+  T+  L+ G C++G + EAR LLD +   G   D +        YN +I G 
Sbjct: 426 DKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIV-------LYNIVIDGY 478

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K+   + A EL + ++  GITP   T+ SLI G       AE+
Sbjct: 479 AKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEA 522



 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 159/321 (49%), Gaps = 20/321 (6%)

Query: 1   MKSRGVQPDSYTYGS-FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           M SRG + +S    S  +SG+CK GR++EA  +  QMK +GL P  V Y+ +I G C  G
Sbjct: 353 MLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLG 412

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             +MA    DEM  + I+P + T+  L+  L  +  ++EA  +L  +   G   D + YN
Sbjct: 413 KFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYN 472

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
           I+I+GY + G  ++A  L   +I  GI P++ T+ SLI+   K   + EA ++ +     
Sbjct: 473 IVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLY 532

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK---- 235
           G+ P +V +  L+D +   GN +    L +EM    + P  VTY+ +  G CR  K    
Sbjct: 533 GLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENC 592

Query: 236 --------VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287
                    E+ ++ L  M+  GI PD I       TYN +IQ LC+ +    A   L  
Sbjct: 593 NHVLRERIFEKCKQGLRDMESEGIPPDQI-------TYNTIIQYLCRVKHLSGAFVFLEI 645

Query: 288 MVSKGITPDDNTYFSLIEGIA 308
           M S+ +     TY  LI+ + 
Sbjct: 646 MKSRNLDASSATYNILIDSLC 666



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 54/323 (16%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  + + P+S T+G+ + G+C++G L EA  +L+ +  +G     V YN +IDGY   G 
Sbjct: 424 MCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGC 483

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A      +++ GI P+ +T+N LI+     + + EA  +L  +   G+ P  ++Y  
Sbjct: 484 IEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTT 543

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPT------------------------------- 149
           L++ Y  CGN K    L  EM  +GI PT                               
Sbjct: 544 LMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEK 603

Query: 150 ----------------MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
                            +TY ++I  L +   +  A    E   ++ +      +N LID
Sbjct: 604 CKQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILID 663

Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
             C  G I +A S +  +    V   +  Y TL+   C +G  E A +L  Q+  RG   
Sbjct: 664 SLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRG--- 720

Query: 254 DHISFNPTRLTYNALIQGLCKNQ 276
               FN +   Y+A+I  LC+  
Sbjct: 721 ----FNVSIRDYSAVINRLCRRH 739



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ------------MKENGLVPTAVTY 48
           MK+ G+ P + TY     G+C+  + E  + +L +            M+  G+ P  +TY
Sbjct: 564 MKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKCKQGLRDMESEGIPPDQITY 623

Query: 49  NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE 108
           NT+I   C   +L  AF F + M  + +  +++TYN+LI  L +   + +AD  +  + E
Sbjct: 624 NTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQE 683

Query: 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
           + +      Y  LI  +C  G+ + A  L  +++H+G   ++  Y+++I  L +++ M
Sbjct: 684 QNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLCRRHLM 741


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 159/291 (54%), Gaps = 7/291 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G     Y +   +    KEG +  A  + + + +  L P+ V++NTL++GY   G+L+  
Sbjct: 131 GYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F  ++ M   G+ P   TY++LI+ L  E KM +A+++  EM + G+VP+ +T+  LI+G
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           +C+ G    A  ++ +M+ + +   ++TY +LI+ L K+  + +A  L +    KG+ PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            + +  LIDG+C  G++E AF   K M +  +  D+V Y  L+ G C++G+  +A ++L 
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
           +M   G+KP+ I       TY  +I   CK  +     +LL+EM   G  P
Sbjct: 371 EMLSVGLKPE-IG------TYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 1   MKSRGVQ-PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59
           ++++G Q  D Y +   ++   + G L +A       KE+       T   +++      
Sbjct: 56  LETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLK 115

Query: 60  NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
             ++ + F +E ++ G   +   +N+L+H  + E ++  A  +   + +  + P  +++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFN 175

Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
            L+NGY + G+  + F L + M   G+QP + TY+ LI  L K+++M +A++LF+  L  
Sbjct: 176 TLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDN 235

Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
           G++P+ V F  LIDGHC NG ++ A  + K+M    +  D +TYNTL++G C++G +++A
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQA 295

Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
           + L+D+M  +G+KPD       ++TY  LI G CK  + + A E  + M+ + I  DD  
Sbjct: 296 QDLIDEMSMKGLKPD-------KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVA 348

Query: 300 YFSLIEGIASVDKAAES 316
           Y +LI G+    ++ ++
Sbjct: 349 YTALISGLCQEGRSVDA 365



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 134/222 (60%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M++ GVQPD YTY   ++G+CKE ++++A+ + ++M +NGLVP  VT+ TLIDG+C  G 
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +++A     +M+ Q +     TYN LI+ L  +  + +A D++ EM  KG+ PD ITY  
Sbjct: 257 VDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTT 316

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+ G+ + AF     MI + I+   + YT+LI  L ++ R ++A+++    L+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
           + P+I  +  +I+  C  G++     LLKEM R    P  VT
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG  P++ T  + + G+C  G ++ A    +++   G     V+Y TLI+G C  G  + 
Sbjct: 125 RGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKA 184

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 ++    + P    Y  +IH L   + + +A D+  EM  KGI P+  TY  LI+
Sbjct: 185 VARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIH 244

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           G+C  GN K+AFSL +EM  K I P + T+  LI  L+K+ ++ EA  LFE    K M P
Sbjct: 245 GFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFP 304

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           +IV + +LIDG C N ++ERA +L K+M    + P+  +Y  L+   C+ G++E A++  
Sbjct: 305 NIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFF 364

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
             +  +G    H++      TYN +I GLCK        +L  +M  KG  P+  T+ ++
Sbjct: 365 QHLLVKGY---HLNVR----TYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTI 417

Query: 304 IEGIASVDK 312
           I  +   D+
Sbjct: 418 ICALLEKDE 426



 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 159/301 (52%), Gaps = 7/301 (2%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
           P ++ + + +S + K  R      + +Q + NG+ P   T + LI+ +C+  ++  AFS 
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 68  RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
              ++K+G  P A T N LI  L    ++  A     ++  +G   D ++Y  LING C+
Sbjct: 119 FANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCK 178

Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
            G  K    L  ++    ++P ++ YT++I  L K   + +A  L+   + KG+ P++  
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFT 238

Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
           +  LI G C  GN++ AFSLL EM    ++PD  T+N L+    ++GK++EA  L ++MK
Sbjct: 239 YTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMK 298

Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
            + + P+ +       TY +LI GLCKN   + A  L ++M  +GI P+  +Y  L++ +
Sbjct: 299 HKNMFPNIV-------TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDAL 351

Query: 308 A 308
            
Sbjct: 352 C 352



 Score =  167 bits (422), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 153/291 (52%), Gaps = 7/291 (2%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           ++G Q D  +YG+ ++G+CK G  +  +R+L +++ + + P  V Y T+I   C    L 
Sbjct: 159 AQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLG 218

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A     EM+ +GI P   TY  LIH   +   + EA  +L EM  K I PD  T+NILI
Sbjct: 219 DACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILI 278

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
           +   + G   +A SL +EM HK + P ++TYTSLI  L K + +  A  L +    +G+ 
Sbjct: 279 DALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ 338

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++  +  L+D  C  G +E A    + +     H +  TYN +++G C+ G   +   L
Sbjct: 339 PNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDL 398

Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
             +M+ +G  P+ I       T+  +I  L +  E D AE+ LREM+++G+
Sbjct: 399 KSKMEGKGCMPNAI-------TFKTIICALLEKDENDKAEKFLREMIARGL 442



 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 145/304 (47%), Gaps = 7/304 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD  T    ++  C    +  A  +   + + G  P A+T NTLI G C  G ++ A
Sbjct: 91  GITPDLCTLSILINCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRA 150

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F D++V QG      +Y  LI+ L    +      +L+++    + PD + Y  +I+ 
Sbjct: 151 LHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHC 210

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+      A  L+ EMI KGI P + TYT+LI        + EA  L      K + PD
Sbjct: 211 LCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPD 270

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           +  FN LID     G I+ A SL +EM    + P+ VTY +L+ G C+   +E A  L  
Sbjct: 271 VYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCK 330

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +MK +GI+P+  S       Y  L+  LCK    + A++  + ++ KG   +  TY  +I
Sbjct: 331 KMKEQGIQPNVYS-------YTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMI 383

Query: 305 EGIA 308
            G+ 
Sbjct: 384 NGLC 387



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 136/251 (54%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++   V+PD   Y + +  +CK   L +A  +  +M   G+ P   TY TLI G+C  GN
Sbjct: 192 LEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGN 251

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AFS  +EM  + I P   T+N+LI  L  E K+ EA  + +EM  K + P+ +TY  
Sbjct: 252 LKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTS 311

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G C+  + ++A +L  +M  +GIQP + +YT L+  L K  R+  A Q F++ L KG
Sbjct: 312 LIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKG 371

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              ++  +N +I+G C  G       L  +M+     P+ +T+ T++     + + ++A 
Sbjct: 372 YHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAE 431

Query: 241 RLLDQMKRRGI 251
           + L +M  RG+
Sbjct: 432 KFLREMIARGL 442



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 98/182 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK + + PD YT+   +  + KEG+++EA  + E+MK   + P  VTY +LIDG C   +
Sbjct: 262 MKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHH 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A +   +M +QGI P   +Y +L+  L    ++  A    + +  KG   +  TYN+
Sbjct: 322 LERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNV 381

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +ING C+ G       L  +M  KG  P  +T+ ++I  L +++   +A++     +A+G
Sbjct: 382 MINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARG 441

Query: 181 ML 182
           +L
Sbjct: 442 LL 443



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 7/239 (2%)

Query: 78  PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137
           P    +N ++  L+  ++      + K+    GI PD  T +ILIN +C   +   AFS+
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 138 HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197
              ++ +G  P  +T  +LI  L     +  A    +  +A+G   D V +  LI+G C 
Sbjct: 119 FANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCK 178

Query: 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257
            G  +    LL++++   V PD V Y T++H  C+   + +A  L  +M  +GI P+   
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPN--- 235

Query: 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
                 TY  LI G C       A  LL EM  K I PD  T+  LI+ +A   K  E+
Sbjct: 236 ----VFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEA 290


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 174/339 (51%), Gaps = 30/339 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+  DS  Y   VS +C  GRL+EA ++L+++ E GL  + V +N+LI  Y   G  + A
Sbjct: 417 GLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKA 476

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F     MV+ G  P++ST N L+  L  +  + EA  +L  M EKG   + + Y +L++G
Sbjct: 477 FEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDG 536

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           Y +  N + A  L  EM  +GI P  + +T+LI  LSK   + EA ++F    A G +P+
Sbjct: 537 YFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPN 596

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +N+LI G C  G +  A  L KEM +  +  D  T+N ++ G CR+G+++ A     
Sbjct: 597 NFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFL 656

Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
            M+R G+ PD  +FN                            P   TYN  + G C+ +
Sbjct: 657 DMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMR 716

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS--VDKA 313
           + + A  +L +++S GI PD  TY +++ GI S  +D+A
Sbjct: 717 KMNQAVIILDQLISAGIVPDTVTYNTMLSGICSDILDRA 755



 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 149/292 (51%), Gaps = 8/292 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P S T  S + G+C++G L+EA  +L +M E G     V Y  L+DGY    NLE A
Sbjct: 487 GFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGA 546

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                EM ++GI P A  +  LI  L     + EA ++  EM   G VP++  YN LI G
Sbjct: 547 QFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRG 606

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C CG   +A  L  EM  KG+     T+  +I    ++ +M  A + F +    G+LPD
Sbjct: 607 LCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPD 666

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
           I  FN LI G+C   ++  A  ++ +M    + PD  TYNT MHG CR  K+ +A  +LD
Sbjct: 667 IFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILD 726

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
           Q+   GI PD +       TYN ++ G+C +   D A  L  +++  G  P+
Sbjct: 727 QLISAGIVPDTV-------TYNTMLSGICSDIL-DRAMILTAKLLKMGFIPN 770



 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++  G+ P++  Y + + G  K   + +AS + E+M+  G+ P  VT+N L+ G+   G 
Sbjct: 343 IQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGR 402

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E +     +++  G+   +S Y++++  L    ++ EA  +L+E+ EKG+    + +N 
Sbjct: 403 IEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNS 462

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  Y R G   KAF  +  M+  G  P+  T  SL+  L ++  + EA  L    L KG
Sbjct: 463 LIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKG 522

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              + V +  L+DG+    N+E A  L KEM    ++PD V +  L+ G  + G VEEA 
Sbjct: 523 FPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAY 582

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            +  +M         I F P    YN+LI+GLC       A +L +EM  KG+  D  T+
Sbjct: 583 EVFLEMSA-------IGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTF 635

Query: 301 FSLIEGIA 308
             +I+G  
Sbjct: 636 NIIIDGFC 643



 Score =  157 bits (398), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 159/316 (50%), Gaps = 7/316 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   GV+P   T+ + +  +C+EG + EA ++ + +++ G+ P A  YNTL+DGY     
Sbjct: 308 MVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKARE 367

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    +EM   G+ P   T+N+L+       ++ ++D +LK++   G+  DS  Y++
Sbjct: 368 VAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDV 427

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +++  C  G   +A  L  E++ KG+  +++ + SLI   S+     +A + +   +  G
Sbjct: 428 MVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCG 487

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P     N+L+ G C  G ++ A  LL  M       ++V Y  L+ G  +   +E A+
Sbjct: 488 FTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQ 547

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L  +MK RGI PD ++F        ALI GL K    + A E+  EM + G  P++  Y
Sbjct: 548 FLWKEMKERGIYPDAVAF-------TALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAY 600

Query: 301 FSLIEGIASVDKAAES 316
            SLI G+    +  E+
Sbjct: 601 NSLIRGLCDCGRVTEA 616



 Score =  157 bits (396), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 166/351 (47%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G +P + T+ + + G C++ R+     +L  M +    P  VT+N LI+  C  G 
Sbjct: 238 MIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGR 297

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
             +A  +   MV+ G+ P+ +T+  ++H L  E  +VEA  +   + + GI P++  YN 
Sbjct: 298 TWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNT 357

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++GY +     +A  L++EM   G+ P  +T+  L++   K  R+ ++D+L ++ +  G
Sbjct: 358 LMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSG 417

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKE------------------------------ 210
           +  D  +++ ++   C  G ++ A  LL+E                              
Sbjct: 418 LFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAF 477

Query: 211 -----MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
                M R    P   T N+L+ G CR+G ++EAR LL +M  +G       F   ++ Y
Sbjct: 478 EAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKG-------FPINKVAY 530

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
             L+ G  K    + A+ L +EM  +GI PD   + +LI+G++      E+
Sbjct: 531 TVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEA 581



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 152/303 (50%), Gaps = 11/303 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK RG+ PD+  + + + G+ K G +EEA  +  +M   G VP    YN+LI G C+ G 
Sbjct: 553 MKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGR 612

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A     EM ++G++    T+N++I       +M  A +   +M   G++PD  T+NI
Sbjct: 613 VTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNI 672

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI GYC+  +   A  + ++M   G+ P + TY + +    +  +M +A  + +  ++ G
Sbjct: 673 LIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAG 732

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++PD V +N ++ G C++  ++RA  L  ++ +M   P+ +T N L+   C+QG  E+A 
Sbjct: 733 IVPDTVTYNTMLSGICSD-ILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQGMPEKAL 791

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                    G K   ISF    ++Y  L Q  C  Q+     EL+R    K +  D   Y
Sbjct: 792 IW-------GQKLREISFGFDEISYRILDQAYCLMQDD---VELVRGTYEKHLFMDFLMY 841

Query: 301 FSL 303
            + 
Sbjct: 842 ITF 844



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 134/274 (48%), Gaps = 8/274 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G   +   Y   + G  K   LE A  + ++MKE G+ P AV +  LIDG    GN
Sbjct: 518 MLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGN 577

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A+    EM   G +P    YN LI  L    ++ EA  + KEM +KG++ D+ T+NI
Sbjct: 578 VEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNI 637

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+CR G  K A     +M   G+ P + T+  LI    K   M+ A ++     + G
Sbjct: 638 IIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCG 697

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDI  +N  + G+C    + +A  +L ++    + PD VTYNT++ G C         
Sbjct: 698 LDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGICSD------- 750

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
            +LD+      K   + F P  +T N L+   CK
Sbjct: 751 -ILDRAMILTAKLLKMGFIPNVITTNMLLSHFCK 783



 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 152/313 (48%), Gaps = 10/313 (3%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           + D     + + G    G   EA  +L  M+  G+ P   +   L+      G+    + 
Sbjct: 174 ESDFSVLNTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWK 233

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M+ +G  P+  T+N +I     + ++V  + +L  M +    PD +T+NILIN  C
Sbjct: 234 LFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACC 293

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G    A      M+  G++P++ T+T+++  L ++  ++EA +LF+     G+ P+  
Sbjct: 294 IGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAA 353

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           ++N L+DG+     + +A  L +EM    V PD VT+N L+ G  + G++E++ RLL  +
Sbjct: 354 IYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDL 413

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
              G+  D          Y+ ++  LC     D A +LL+E++ KG+T     + SLI  
Sbjct: 414 IVSGLFLDSS-------LYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGA 466

Query: 307 IASV---DKAAES 316
            +     DKA E+
Sbjct: 467 YSRAGLEDKAFEA 479



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 11/206 (5%)

Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
           D    N L+ G+   G   +A  +   M   G++P + + T L+ +L +        +LF
Sbjct: 176 DFSVLNTLLRGFLNVGMGFEALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLF 235

Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
           ++ + KG  P  + FNA+I G C    +    SLL  M +    PD VT+N L++  C  
Sbjct: 236 KDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIG 295

Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSK 291
           G+   A   L  M R G++P       +  T+  ++  LC+  EG++ E  +L   +   
Sbjct: 296 GRTWVAIDWLHLMVRSGVEP-------SVATFTTILHALCR--EGNVVEARKLFDGIQDM 346

Query: 292 GITPDDNTYFSLIEGIASVDKAAESS 317
           GI P+   Y +L++G     + A++S
Sbjct: 347 GIAPNAAIYNTLMDGYFKAREVAQAS 372


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 162/334 (48%), Gaps = 39/334 (11%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRG  PD Y     +  +C+ GR  +A+R+L   + +G       YNTL+ GYC  G L+
Sbjct: 102 SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLD 161

Query: 63  M--------------------------------AFSFRDEMVKQGIMPTASTYNLLIHEL 90
                                            A S  D+M+ +G  P+  TY +L+  +
Sbjct: 162 AARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAV 221

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
                  +A ++L EM  KG  P+ +TYN++ING CR G    A    + +   G QP  
Sbjct: 222 CKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDT 281

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++YT+++  L    R  + ++LF   + K  +P+ V F+ L+   C  G +ERA  +L++
Sbjct: 282 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 341

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M       +    N +++  C+QG+V++A + L+ M   G  PD IS       Y  +++
Sbjct: 342 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS-------YTTVLK 394

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           GLC+ +  + A+ELL+EMV K   P++ T+ + I
Sbjct: 395 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 428



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G QPD+ +Y + + G+C   R E+   +  +M E   +P  VT++ L+  +C  G 
Sbjct: 272 LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGM 331

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    ++M   G     +  N++I+ +  + ++ +A   L  MG  G  PD+I+Y  
Sbjct: 332 VERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTT 391

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G CR    + A  L  EM+ K   P  +T+ + I +L ++  + +A  L E     G
Sbjct: 392 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 451

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +IV +NAL++G C  G ++ A  L   M      P+ +TY TL+ G C   +++ A 
Sbjct: 452 CEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAA 508

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL +M ++   P+ ++FN                            P  +TYN L+ G+
Sbjct: 509 ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGI 568

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K+   + A ELL  +VS G++PD  TY S+I  ++  D+  E+
Sbjct: 569 TKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 612



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 25/329 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QP   TY   +  +CK     +A  +L++M+  G  P  VTYN +I+G C +G 
Sbjct: 202 MLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR 261

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F + +   G  P   +Y  ++  L   ++  + +++  EM EK  +P+ +T+++
Sbjct: 262 VDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDM 321

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  +CR G  ++A  + ++M   G          +I  + KQ R+ +A Q   N  + G
Sbjct: 322 LVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG 381

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +  ++ G C     E A  LLKEM R    P+EVT+NT +   C++G +E+A 
Sbjct: 382 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQAT 441

Query: 241 RLLDQMKRRGIKPDHISFN-------------------------PTRLTYNALIQGLCKN 275
            L++QM   G + + +++N                         P  +TY  L+ GLC  
Sbjct: 442 MLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNA 501

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +  D A ELL EM+ K   P+  T+  L+
Sbjct: 502 ERLDAAAELLAEMLQKDCAPNVVTFNVLV 530



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 34/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S  V PD+YTY   + G+C  GR+ EA  +L+ M   G  P+ VTY  L++  C    
Sbjct: 167 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 226

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM  +G  P   TYN++I+ +  E ++ +A + L  +   G  PD+++Y  
Sbjct: 227 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 286

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C     +    L  EM+ K   P  +T+  L+    +   +  A Q+ E     G
Sbjct: 287 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 346

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +  + N +I+  C  G ++ AF  L  M      PD ++Y T++ G CR  + E+A+
Sbjct: 347 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 406

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL +M R+   P+ ++FN                               +TYNAL+ G 
Sbjct: 407 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 466

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           C     D A EL   M  K   P+  TY +L+ G+ +   +D AAE
Sbjct: 467 CVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 509



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 163/318 (51%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD+ +Y + + G+C+  R E+A  +L++M      P  VT+NT I   C KG 
Sbjct: 377 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 436

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    ++M + G      TYN L++   ++ ++  A ++   M  K   P++ITY  
Sbjct: 437 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTT 493

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C       A  L  EM+ K   P ++T+  L+    ++  M EA +L E  +  G
Sbjct: 494 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 553

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+++ +N L+DG   + N E A  LL  +    V PD VTY++++    R+ +VEEA 
Sbjct: 554 CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 613

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   ++  G++P  +        YN ++  LCK    D A +    MVS G  P++ TY
Sbjct: 614 KMFHIVQDLGMRPKAV-------IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 666

Query: 301 FSLIEGIASVDKAAESSN 318
            +LIEG+A+ D   E+ +
Sbjct: 667 ITLIEGLANEDFLKETRD 684



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 150/293 (51%), Gaps = 10/293 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P+  T+ +F+  +C++G +E+A+ ++EQM E+G     VTYN L++G+C +G 
Sbjct: 412 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 471

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M  +   P   TY  L+  L    ++  A ++L EM +K   P+ +T+N+
Sbjct: 472 VDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 528

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+ G   +A  L ++M+  G  P ++TY +L+  ++K     EA +L    ++ G
Sbjct: 529 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 588

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++++I        +E A  +   +  + + P  V YN ++   C++   + A 
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
                M   G  P+        LTY  LI+GL          +LLRE+ S+G+
Sbjct: 649 DFFAYMVSNGCMPNE-------LTYITLIEGLANEDFLKETRDLLRELCSRGV 694



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 31/316 (9%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A+R++++    G  P       LI   C +G    A        + G       YN L+ 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                 ++  A  ++  M    + PD+ TY  +I G C  G   +A SL D+M+H+G QP
Sbjct: 153 GYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 209

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           +++TYT L+  + K     +A ++ +   AKG  P+IV +N +I+G C  G ++ A   L
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 269

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------- 259
             +      PD V+Y T++ G C   + E+   L  +M  +   P+ ++F+         
Sbjct: 270 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG 329

Query: 260 -------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                                    N +I  +CK    D A + L  M S G +PD  +Y
Sbjct: 330 GMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISY 389

Query: 301 FSLIEGIASVDKAAES 316
            ++++G+   ++  ++
Sbjct: 390 TTVLKGLCRAERWEDA 405



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 91/182 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P+  T+   VS  C++G ++EA  ++EQM E+G  P  +TYNTL+DG     N
Sbjct: 514 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCN 573

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      +V  G+ P   TY+ +I  L  E ++ EA  M   + + G+ P ++ YN 
Sbjct: 574 SEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNK 633

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C+  N   A      M+  G  P  LTY +LI  L+ ++ + E   L     ++G
Sbjct: 634 ILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 693

Query: 181 ML 182
           +L
Sbjct: 694 VL 695


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           D   +   V    + GR+ E  R   +M   G VPT +T N L++G       +  +   
Sbjct: 187 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 246

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128
           +EM + GI P   T+N+L H L  +    + +  L++M E+G  PD +TYN LIN YCR 
Sbjct: 247 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRK 306

Query: 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF 188
           G    AF L+  M  +G+ P +++YT+L+  L K+ R+ EA QLF   + +G+ PDIV +
Sbjct: 307 GRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTY 366

Query: 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248
           N LI G+C  G ++ + SLL +M    + PD  T   L+ G  ++GK   A  L+ +++R
Sbjct: 367 NTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQR 426

Query: 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
            G+       + ++  Y+ LI  LC+      A+ LL  M   G  P+   Y  LI+   
Sbjct: 427 FGV-------SISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFC 479

Query: 309 SVDKAAES 316
             D  AE+
Sbjct: 480 QCDCIAEA 487



 Score =  155 bits (392), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 159/351 (45%), Gaps = 42/351 (11%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P+ YT+      +CK+G   + ++ LE+M+E G  P  VTYNTLI+ YC KG 
Sbjct: 249 MERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGR 308

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ AF     M ++G++P   +Y  L++ L  E ++ EA  +   M  +G+ PD +TYN 
Sbjct: 309 LDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNT 368

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT---------------------------- 152
           LI+GYC+ G  +++ SL  +MI  GI P   T                            
Sbjct: 369 LIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFG 428

Query: 153 -------YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
                  Y+ LI  L ++NR   A  L E     G  P++ ++N LI   C    I  A 
Sbjct: 429 VSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEAL 488

Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
            L  EM   ++ P+  TY  ++    R  +  E   L+ +M   G+ PD       R   
Sbjct: 489 LLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPD---LEICR--- 542

Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            AL  G C+  + D AE LL     +    D  ++ +LI   ++    A S
Sbjct: 543 -ALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARS 592



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 142/261 (54%), Gaps = 2/261 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG+ PD  TY + + G CKEG+++E+  +L  M  NG+ P + T   L++GY  +G 
Sbjct: 354 MVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGK 413

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A +   E+ + G+  +   Y+ LI  L  E +   A ++L+ M + G  P+   YN 
Sbjct: 414 FLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNE 473

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI  +C+C    +A  L  EM+ K I+P + TY ++I  LS+ +R +E + L    +A G
Sbjct: 474 LIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASG 533

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR-MKVHPDEVTYNTLMHGRCRQGKVEEA 239
           MLPD+ +  AL  G+C   +I++A SLL    +  ++H  E ++N L+     +G +  +
Sbjct: 534 MLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTE-SFNALIRITSAKGDIARS 592

Query: 240 RRLLDQMKRRGIKPDHISFNP 260
             + D M + G+ P+ ++ NP
Sbjct: 593 LEIQDMMLKMGLLPNPLTCNP 613



 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 158/313 (50%), Gaps = 11/313 (3%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G  P   T    ++G+ K    +    + E+M+  G+ P   T+N L    C  G+    
Sbjct: 218 GFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKV 277

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
             F ++M ++G  P   TYN LI+    + ++ +A  + K M  +G+VPD ++Y  L+NG
Sbjct: 278 NKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNG 337

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
            C+ G  ++A  L   M+H+G+ P ++TY +LI    K+ +M E+  L  + +  G+ PD
Sbjct: 338 LCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPD 397

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
                 L++G+   G    A +L+ E+ R  V   +  Y+ L+   CR+ +   A+ LL+
Sbjct: 398 SFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLE 457

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL--REMVSKGITPDDNTYFS 302
           +M + G KP+          YN LI+  C  Q   +AE LL   EMV K I P+  TY +
Sbjct: 458 RMSKDGHKPE-------LEIYNELIKSFC--QCDCIAEALLLKMEMVDKEIKPNLATYRA 508

Query: 303 LIEGIASVDKAAE 315
           +I  ++ + ++ E
Sbjct: 509 VIGCLSRLSRSME 521


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 30/308 (9%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           ++A ++ E M+ +G  P       L++         M +    +MV+ G++P    +N+L
Sbjct: 144 QDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVL 203

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           IH       + +A+ +L EM  + I PD  TYN LI+ YC+ G   +A  + D M   G+
Sbjct: 204 IHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGV 263

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P ++TY SLI+   ++ RM EA +LF      G  P+ V +  LIDG+C   ++E A  
Sbjct: 264 SPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALR 321

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------- 259
           L + M+   +HP  VTYN+++   C +GK+++A RLL++M  R ++PD+++ N       
Sbjct: 322 LREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYC 381

Query: 260 ---------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                                P + T+ ALI G CK  E D A+E L EM+  G +P  +
Sbjct: 382 KIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYS 441

Query: 299 TYFSLIEG 306
           TY  L++ 
Sbjct: 442 TYSWLVDS 449



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 147/288 (51%), Gaps = 9/288 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV PD  TY S + G C+EGR+ EA R+  ++  NG  P  VTY TLIDGYC   +
Sbjct: 258 MERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVND 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A   R+ M  +G+ P   TYN ++ +L  E K+ +A+ +L EM E+ + PD++T N 
Sbjct: 316 LEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNT 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G+   A  +  +M+  G++P   T+ +LI    K + +  A +     L  G
Sbjct: 376 LINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P    ++ L+D +    N E    L  E+ R  +  D   Y  L+   C+  K+E A 
Sbjct: 436 FSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAE 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           R+   M+ +G+K D +        Y +L     K  +   A ++L EM
Sbjct: 496 RIFTLMQGKGMKGDSV-------VYTSLAYAYFKAGKAIAASDMLDEM 536



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P+ + +   +   CK G +E+A ++L +M+   + P   TYNTLI  YC KG    A
Sbjct: 192 GVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEA 251

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              +D M + G+ P   TYN LI+    E +M EA  + +E+   G  P+ +TY  LI+G
Sbjct: 252 LGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDG 309

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YCR  + ++A  L + M  +G+ P ++TY S++  L ++ ++ +A++L      + + PD
Sbjct: 310 YCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPD 369

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V  N LI+ +C  G++  A  + K+M    + PD+ T+  L+HG C+  +V+ A+  L 
Sbjct: 370 NVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLF 429

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G       F+P+  TY+ L+         +    L  E+  KG+  D + Y +LI
Sbjct: 430 EMLDAG-------FSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALI 482

Query: 305 EGIASVDK 312
             +  +DK
Sbjct: 483 RRLCKIDK 490



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 115/216 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P   TY S +  +C+EG++++A+R+L +M E  + P  VT NTLI+ YC  G+
Sbjct: 326 MEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGD 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   + +M++ G+ P   T+  LIH      ++  A + L EM + G  P   TY+ 
Sbjct: 386 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSW 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ Y    N +    L DE+  KG+   +  Y +LI  L K +++  A+++F     KG
Sbjct: 446 LVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKG 505

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           M  D V++ +L   +   G    A  +L EMD+ ++
Sbjct: 506 MKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRL 541



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 11/206 (5%)

Query: 113 PDSIT--YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
           PDS +   + L+  Y      + A  + + M   G +P +   T L+  L+K        
Sbjct: 123 PDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVW 182

Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
           ++++  +  G++P+I +FN LI   C +G++E+A  LL EM+   + PD  TYNTL+   
Sbjct: 183 KVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLY 242

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C++G   EA  + D+M+R G+ PD +       TYN+LI G C+      A  L RE+  
Sbjct: 243 CKKGMHYEALGIQDRMERGGVSPDIV-------TYNSLIYGFCREGRMREALRLFREI-- 293

Query: 291 KGITPDDNTYFSLIEGIASVDKAAES 316
            G TP+  TY +LI+G   V+   E+
Sbjct: 294 NGATPNHVTYTTLIDGYCRVNDLEEA 319



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++PD +T+ + + G CK   ++ A   L +M + G  P+  TY+ L+D Y ++ N
Sbjct: 396 MLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDN 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E      DE+ ++G+    S Y  LI  L    K+  A+ +   M  KG+  DS+ Y  
Sbjct: 456 KEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTS 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           L   Y + G A  A  + DEM  + +  T+  Y
Sbjct: 516 LAYAYFKAGKAIAASDMLDEMDKRRLMITLKIY 548


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 175/339 (51%), Gaps = 30/339 (8%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G+ PD   +   VSG+C  GRL+EA   L  M E GL P+ + +N++I  Y   G  + A
Sbjct: 436 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKA 495

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
           F     MV  G+ P+ ST + L+  L +  ++ EA +++ +M EKG+  +++ + +L++ 
Sbjct: 496 FEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDK 555

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           + + G+   A SL  EM  +GI P ++ +++ I  LSKQ  + EA  +F   L KG++P+
Sbjct: 556 FFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPN 615

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +N+LI G C  G +  A  L K M    + PD  T N ++ G C+QG++  A  +  
Sbjct: 616 NFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFM 675

Query: 245 QMKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQ 276
            M + G+ PD I++                            NP   TYN  I G C ++
Sbjct: 676 DMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSR 735

Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS--VDKA 313
             + A  +L E+VS GI P+  TY S++ G+ S  +D+A
Sbjct: 736 RMNRAVLMLDELVSAGIVPNTVTYNSMLNGVCSDILDRA 774



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 171/376 (45%), Gaps = 77/376 (20%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P   T+ + ++  CKEG + EA ++ + +KE G  P A+ YNTL++GY     
Sbjct: 327 MIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMRE 386

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHE---------------------LLMERKMV-- 97
           ++ A    +EM K+GI P   T+N+L+                       LL +R +   
Sbjct: 387 IDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDI 446

Query: 98  ------------EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
                       EA + L +M EKG+ P  I +N +I  Y + G   KAF  +  M+H G
Sbjct: 447 SVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFG 506

Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM------------------------ 181
           + P+  T +SL+  LS   R+ EA +L    + KG+                        
Sbjct: 507 LTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQ 566

Query: 182 -----------LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
                       PD+V F+A IDG    G +E A+++  EM R  + P+   YN+L+ G 
Sbjct: 567 SLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGF 626

Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
           C+ GK+ EA +L   M+ RG+ PD         T N +I GLCK      A  +  +M  
Sbjct: 627 CKCGKLNEALKLEKVMRHRGLLPD-------IFTTNMIIGGLCKQGRMRSAINVFMDMHQ 679

Query: 291 KGITPDDNTYFSLIEG 306
            G++PD  TY +LI G
Sbjct: 680 TGLSPDIITYNTLING 695



 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 164/338 (48%), Gaps = 28/338 (8%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           +P+++ Y   ++  C  GR  +A      M E G  PT VT+NT+I+ +C +GN+  A  
Sbjct: 298 EPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARK 357

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
             D + + G  P A  YN L++  +  R++ +A+ + +EM +KGI PD IT+NIL++G+ 
Sbjct: 358 LFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHY 417

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           + G  +    L  ++   G+ P    +   +  L    R+ EA +   + L KG+ P I+
Sbjct: 418 KYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSII 477

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            FN++I  +   G  ++AF   K M    + P   T ++L+ G    G+++EA  L+ QM
Sbjct: 478 AFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQM 537

Query: 247 KRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEG 278
             +G+  ++++F                             P  + ++A I GL K    
Sbjct: 538 IEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLV 597

Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
           + A  +  EM+ KG+ P++  Y SLI G     K  E+
Sbjct: 598 EEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEA 635



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 152/305 (49%), Gaps = 13/305 (4%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           RG QP  YT+   + G C++G +     +L  M +    P A  YN +I+  C +G    
Sbjct: 260 RGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSD 319

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A ++ + M+++G  PT  T+N +I+    E  +VEA  +   + E G  P++I YN L+N
Sbjct: 320 ALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMN 379

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
           GY +     +A  L++EM  KGI P  +T+  L+    K  R  + D+L ++    G+LP
Sbjct: 380 GYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLP 439

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG---KVEEAR 240
           D  +F+  + G C  G ++ A   L +M    + P  + +N+++    + G   K  EA 
Sbjct: 440 DRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAY 499

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +L+           H    P+  T ++L+ GL  N     A EL+ +M+ KG++ ++  +
Sbjct: 500 KLM----------VHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAF 549

Query: 301 FSLIE 305
             L++
Sbjct: 550 TVLLD 554



 Score =  144 bits (363), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 1/238 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+ RG+ PD   + +F+ G+ K+G +EEA  +  +M   GL+P    YN+LI G+C  G 
Sbjct: 572 MERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGK 631

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A      M  +G++P   T N++I  L  + +M  A ++  +M + G+ PD ITYN 
Sbjct: 632 LNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNT 691

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LINGYC+  +   A +L + M   G  P + TY   I       RM  A  + +  ++ G
Sbjct: 692 LINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAG 751

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           ++P+ V +N++++G C++  ++RA  L   + +M   P+ VT N L+    +QG  E 
Sbjct: 752 IVPNTVTYNSMLNGVCSD-ILDRAMILTARLLKMAFVPNVVTANLLLSQFYKQGMPER 808



 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 150/319 (47%), Gaps = 11/319 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV+P +         + + G      ++ + +   G  P   T++ +I G+C KG 
Sbjct: 222 MREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGC 281

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           + +  S    M K    P A  YN++I+   +  +  +A      M E+G  P  +T+N 
Sbjct: 282 IHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNT 341

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +IN +C+ GN  +A  L D +   G  P  + Y +L+    K   + +A+ L+E    KG
Sbjct: 342 VINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKG 401

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD + FN L+ GH   G  E    LLK++  + + PD   ++  + G C  G+++EA 
Sbjct: 402 IAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAM 461

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG--DLAEELLREMVSKGITPDDN 298
             L  M  +G+ P  I+FN     Y         +Q G  D A E  + MV  G+TP  +
Sbjct: 462 EFLMDMLEKGLSPSIIAFNSVIAAY---------SQAGLEDKAFEAYKLMVHFGLTPSPS 512

Query: 299 TYFSLIEGIASVDKAAESS 317
           T  SL+ G++   +  E++
Sbjct: 513 TCSSLLMGLSINGRLQEAT 531



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 146/292 (50%), Gaps = 10/292 (3%)

Query: 28  EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
           +A  +L +M+E G+ P+A     L       G+    +    +++++G  P   T++ +I
Sbjct: 214 QALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGII 273

Query: 88  HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147
                +  +   + +L  M +    P++  YNI+IN  C  G    A +  + MI +G  
Sbjct: 274 LGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCN 333

Query: 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207
           PT++T+ ++I    K+  ++EA +LF+     G  P+ +M+N L++G+     I++A  L
Sbjct: 334 PTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANML 393

Query: 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267
            +EM +  + PD +T+N L+ G  + G+ E+  RLL  +   G+ PD       R  ++ 
Sbjct: 394 YEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPD-------RSLFDI 446

Query: 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV---DKAAES 316
            + GLC     D A E L +M+ KG++P    + S+I   +     DKA E+
Sbjct: 447 SVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEA 498



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 1/226 (0%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+++ Y S + G CK G+L EA ++ + M+  GL+P   T N +I G C +G 
Sbjct: 607 MLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGR 666

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +   +M + G+ P   TYN LI+       MV AD+++  M   G  PD  TYNI
Sbjct: 667 MRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNI 726

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I+G+C      +A  + DE++  GI P  +TY S++  +   + +  A  L    L   
Sbjct: 727 RIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVC-SDILDRAMILTARLLKMA 785

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
            +P++V  N L+      G  ER      ++  +    DE+TY  +
Sbjct: 786 FVPNVVTANLLLSQFYKQGMPERTLMWGHKLSEIPYAFDEITYKIM 831


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 167/318 (52%), Gaps = 7/318 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G  PD  TY + ++  CK GR++EA   LE+ KE GL+P   +Y  L+  YC +G+
Sbjct: 332 MAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGD 391

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A      + + G  P   +Y   IH +++  ++  A  + ++M EKG+ PD+  YN+
Sbjct: 392 YVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNV 451

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++G C+ G       L  EM+ + +QP +  + +L+    +   + EA ++F+  + KG
Sbjct: 452 LMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKG 511

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + P IV +NA+I G C  G +  A S L +M  +   PDE TY+T++ G  +Q  +  A 
Sbjct: 512 VDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSAL 571

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++  QM +   KP+ I       TY +LI G CK  +   AE++ R M S  + P+  TY
Sbjct: 572 KMFGQMMKHKFKPNVI-------TYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTY 624

Query: 301 FSLIEGIASVDKAAESSN 318
            +L+ G     K  ++++
Sbjct: 625 TTLVGGFFKAGKPEKATS 642



 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 151/303 (49%), Gaps = 7/303 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G   D+YT    V G+C  G++EE  R+++     G VP  V YN +IDGYC KG+L+ A
Sbjct: 196 GAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCA 255

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
                E+  +G++PT  TY  LI+      +    D +L EM  +G+  +   +N +I+ 
Sbjct: 256 TRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDA 315

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
             + G   KA      M   G  P + TY ++I    K  R+ EAD+  E    +G+LP+
Sbjct: 316 EFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPN 375

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
              +  L+  +C  G+  +A  +L  +  +   PD V+Y   +HG    G+++ A  + +
Sbjct: 376 KFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVRE 435

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M  +G+ PD          YN L+ GLCKN      + LL EM+ + + PD   + +L+
Sbjct: 436 KMMEKGVFPD-------AQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLM 488

Query: 305 EGI 307
           +G 
Sbjct: 489 DGF 491



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 7/313 (2%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +G  P    Y   + G CK+G L+ A+R L+++K  G++PT  TY  LI+G+C  G  E 
Sbjct: 230 KGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEA 289

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
                 EM  +G+      +N +I        + +A + ++ M E G  PD  TYN +IN
Sbjct: 290 VDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMIN 349

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
             C+ G  K+A    ++   +G+ P   +YT L+    KQ   ++A  +       G  P
Sbjct: 350 FSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKP 409

Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
           D+V + A I G   +G I+ A  + ++M    V PD   YN LM G C+ G+    + LL
Sbjct: 410 DLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLL 469

Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
            +M  R ++PD   F         L+ G  +N E D A ++ + ++ KG+ P    Y ++
Sbjct: 470 SEMLDRNVQPDVYVF-------ATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAM 522

Query: 304 IEGIASVDKAAES 316
           I+G     K  ++
Sbjct: 523 IKGFCKFGKMTDA 535



 Score =  158 bits (399), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 7/306 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           +K +GV P   TYG+ ++G CK G  E   ++L +M   GL      +N +ID     G 
Sbjct: 262 LKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGL 321

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A      M + G  P  +TYN +I+      ++ EAD+ L++  E+G++P+  +Y  
Sbjct: 322 VTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTP 381

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ YC+ G+  KA  +   +   G +P +++Y + I  +     +  A  + E  + KG
Sbjct: 382 LMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKG 441

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PD  ++N L+ G C NG       LL EM    V PD   + TLM G  R G+++EA 
Sbjct: 442 VFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAI 501

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   + R+G+ P  +        YNA+I+G CK  +   A   L +M +    PD+ TY
Sbjct: 502 KIFKVIIRKGVDPGIVG-------YNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTY 554

Query: 301 FSLIEG 306
            ++I+G
Sbjct: 555 STVIDG 560



 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 157/325 (48%), Gaps = 7/325 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +GV PD+  Y   +SG+CK GR      +L +M +  + P    + TL+DG+   G 
Sbjct: 437 MMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGE 496

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L+ A      ++++G+ P    YN +I       KM +A   L +M      PD  TY+ 
Sbjct: 497 LDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYST 556

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+GY +  +   A  +  +M+    +P ++TYTSLI    K+  MI A+++F    +  
Sbjct: 557 VIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFD 616

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           ++P++V +  L+ G    G  E+A S+ + M      P++ T++ L++G           
Sbjct: 617 LVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTNTATSPVLI 676

Query: 241 RLLDQMK-RRGIKPDHIS------FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
              D M+  R +  D  +      ++     YN++I  LCK+   D A+ LL +M++KG 
Sbjct: 677 EEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMVDTAQLLLTKMLTKGF 736

Query: 294 TPDDNTYFSLIEGIASVDKAAESSN 318
             D   + +++ G+    K+ E  N
Sbjct: 737 LIDSVCFTAMLHGLCHKGKSKEWRN 761



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 156/367 (42%), Gaps = 68/367 (18%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS-F 67
           D   + S +  +       E   +LE MK   L PT   ++ LI  Y   G+L+ A   F
Sbjct: 90  DGVAHSSLLKLLASFRVFPEIELVLENMKAQHLKPTREAFSALILAYGESGSLDRALQLF 149

Query: 68  RDEMVKQGIMPTASTYNLLIHELL----------MERKMVEADD---------------- 101
                    +PT    N L++ L+          +  KM++ DD                
Sbjct: 150 HTVREMHNCLPTVVASNSLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVK 209

Query: 102 -------------MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
                        ++K+   KG VP  + YN++I+GYC+ G+ + A     E+  KG+ P
Sbjct: 210 GLCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLP 269

Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
           T+ TY +LI    K       DQL     A+G+  ++ +FN +ID     G + +A   +
Sbjct: 270 TVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETM 329

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR------ 262
           + M  M   PD  TYNT+++  C+ G+++EA   L++ K RG+ P+  S+ P        
Sbjct: 330 RRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQ 389

Query: 263 ----------------------LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
                                 ++Y A I G+  + E D+A  +  +M+ KG+ PD   Y
Sbjct: 390 GDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIY 449

Query: 301 FSLIEGI 307
             L+ G+
Sbjct: 450 NVLMSGL 456



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 121/254 (47%), Gaps = 14/254 (5%)

Query: 4   RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
           +GV P    Y + + G CK G++ +A   L +MK     P   TY+T+IDGY  + ++  
Sbjct: 510 KGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSS 569

Query: 64  AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
           A     +M+K    P   TY  LI+    +  M+ A+ + + M    +VP+ +TY  L+ 
Sbjct: 570 ALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVG 629

Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR---MIEADQLFEN----- 175
           G+ + G  +KA S+ + M+  G  P   T+  LI  L+       +IE     EN     
Sbjct: 630 GFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSMENERSLI 689

Query: 176 ------FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
                  L++G    I  +N++I   C +G ++ A  LL +M       D V +  ++HG
Sbjct: 690 LDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMVDTAQLLLTKMLTKGFLIDSVCFTAMLHG 749

Query: 230 RCRQGKVEEARRLL 243
            C +GK +E R ++
Sbjct: 750 LCHKGKSKEWRNII 763



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 21/234 (8%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M     +P+  TY S ++G CK+  +  A ++   MK   LVP  VTY TL+ G+   G 
Sbjct: 577 MMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGK 636

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELL---MERKMVEADDMLKEMGEKGIVPDSIT 117
            E A S  + M+  G  P  +T++ LI+ L        ++E  D ++   E+ ++ D  T
Sbjct: 637 PEKATSIFELMLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSMEN--ERSLILDFFT 694

Query: 118 -------------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164
                        YN +I   C+ G    A  L  +M+ KG     + +T+++  L  + 
Sbjct: 695 MMLSEGWDQVIAAYNSVIVCLCKHGMVDTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKG 754

Query: 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK---EMDRMK 215
           +  E   +    L K  L   V ++  +D +   G +  A  +L+   E DR++
Sbjct: 755 KSKEWRNIISCDLNKIELQTAVKYSLTLDKYLYQGRLSEASVILQTLIEEDRVR 808


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 30/308 (9%)

Query: 27  EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
           ++A ++ E M+ +G  P       L++         M +    +MV+ G++P    +N+L
Sbjct: 144 QDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVL 203

Query: 87  IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
           IH       + +A+ +L EM  + I PD  TYN LI+ YC+ G   +A  + D M   G+
Sbjct: 204 IHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGV 263

Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
            P ++TY SLI+   ++ RM EA +LF      G  P+ V +  LIDG+C   ++E A  
Sbjct: 264 SPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALR 321

Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------- 259
           L + M+   +HP  VTYN+++   C +GK+++A RLL++M  R ++PD+++ N       
Sbjct: 322 LREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYC 381

Query: 260 ---------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
                                P + T+ ALI G CK  E D A+E L EM+  G +P  +
Sbjct: 382 KIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYS 441

Query: 299 TYFSLIEG 306
           TY  L++ 
Sbjct: 442 TYSWLVDS 449



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 147/288 (51%), Gaps = 9/288 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  GV PD  TY S + G C+EGR+ EA R+  ++  NG  P  VTY TLIDGYC   +
Sbjct: 258 MERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVND 315

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           LE A   R+ M  +G+ P   TYN ++ +L  E K+ +A+ +L EM E+ + PD++T N 
Sbjct: 316 LEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNT 375

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LIN YC+ G+   A  +  +M+  G++P   T+ +LI    K + +  A +     L  G
Sbjct: 376 LINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAG 435

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P    ++ L+D +    N E    L  E+ R  +  D   Y  L+   C+  K+E A 
Sbjct: 436 FSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAE 495

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
           R+   M+ +G+K D +        Y +L     K  +   A ++L EM
Sbjct: 496 RIFTLMQGKGMKGDSV-------VYTSLAYAYFKAGKAIAASDMLDEM 536



 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           GV P+ + +   +   CK G +E+A ++L +M+   + P   TYNTLI  YC KG    A
Sbjct: 192 GVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEA 251

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
              +D M + G+ P   TYN LI+    E +M EA  + +E+   G  P+ +TY  LI+G
Sbjct: 252 LGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDG 309

Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
           YCR  + ++A  L + M  +G+ P ++TY S++  L ++ ++ +A++L      + + PD
Sbjct: 310 YCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPD 369

Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
            V  N LI+ +C  G++  A  + K+M    + PD+ T+  L+HG C+  +V+ A+  L 
Sbjct: 370 NVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLF 429

Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +M   G       F+P+  TY+ L+         +    L  E+  KG+  D + Y +LI
Sbjct: 430 EMLDAG-------FSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALI 482

Query: 305 EGIASVDK 312
             +  +DK
Sbjct: 483 RRLCKIDK 490



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 115/216 (53%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M+  G+ P   TY S +  +C+EG++++A+R+L +M E  + P  VT NTLI+ YC  G+
Sbjct: 326 MEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGD 385

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A   + +M++ G+ P   T+  LIH      ++  A + L EM + G  P   TY+ 
Sbjct: 386 MGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSW 445

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ Y    N +    L DE+  KG+   +  Y +LI  L K +++  A+++F     KG
Sbjct: 446 LVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKG 505

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
           M  D V++ +L   +   G    A  +L EMD+ ++
Sbjct: 506 MKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKRRL 541



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 15/262 (5%)

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           +K +L+ +++    + K     TA   NLL  E +  R  + +  +L  +      PDS 
Sbjct: 71  HKHSLQSSWTMIHTLAKHKQFKTAQ--NLL--ERIAVRDYLSSPSVLNAVVRIHDDPDSN 126

Query: 117 T--YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           +   + L+  Y      + A  + + M   G +P +   T L+  L+K        ++++
Sbjct: 127 SQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYK 186

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
             +  G++P+I +FN LI   C +G++E+A  LL EM+   + PD  TYNTL+   C++G
Sbjct: 187 KMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKG 246

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
              EA  + D+M+R G+ PD +       TYN+LI G C+      A  L RE+   G T
Sbjct: 247 MHYEALGIQDRMERGGVSPDIV-------TYNSLIYGFCREGRMREALRLFREI--NGAT 297

Query: 295 PDDNTYFSLIEGIASVDKAAES 316
           P+  TY +LI+G   V+   E+
Sbjct: 298 PNHVTYTTLIDGYCRVNDLEEA 319



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G++PD +T+ + + G CK   ++ A   L +M + G  P+  TY+ L+D Y ++ N
Sbjct: 396 MLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDN 455

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E      DE+ ++G+    S Y  LI  L    K+  A+ +   M  KG+  DS+ Y  
Sbjct: 456 KEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTS 515

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153
           L   Y + G A  A  + DEM  + +  T+  Y
Sbjct: 516 LAYAYFKAGKAIAASDMLDEMDKRRLMITLKIY 548


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 162/334 (48%), Gaps = 39/334 (11%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRG  PD Y     +  +C+ GR  +A+R+L   + +G       YNTL+ GYC  G L+
Sbjct: 71  SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLD 130

Query: 63  M--------------------------------AFSFRDEMVKQGIMPTASTYNLLIHEL 90
                                            A S  D+M+ +G  P+  TY +L+  +
Sbjct: 131 AARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAV 190

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
                  +A ++L EM  KG  P+ +TYN++ING CR G    A    + +   G QP  
Sbjct: 191 CKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDT 250

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++YT+++  L    R  + ++LF   + K  +P+ V F+ L+   C  G +ERA  +L++
Sbjct: 251 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 310

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M       +    N +++  C+QG+V++A + L+ M   G  PD IS       Y  +++
Sbjct: 311 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS-------YTTVLK 363

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           GLC+ +  + A+ELL+EMV K   P++ T+ + I
Sbjct: 364 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 397



 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 25/329 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QP   TY   +  +CK     +A  +L++M+  G  P  VTYN +I+G C +G 
Sbjct: 171 MLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR 230

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F + +   G  P   +Y  ++  L   ++  + +++  EM EK  +P+ +T+++
Sbjct: 231 VDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDM 290

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  +CR G  ++A  + ++M   G          +I  + KQ R+ +A Q   N  + G
Sbjct: 291 LVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG 350

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +  ++ G C     E A  LLKEM R    P+EVT+NT +   C++G +E+A 
Sbjct: 351 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQAT 410

Query: 241 RLLDQMKRRGIKPDHISFN-------------------------PTRLTYNALIQGLCKN 275
            L++QM   G + + +++N                         P  +TY  L+ GLC  
Sbjct: 411 MLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNA 470

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +  D A ELL EM+ K   P+  T+  L+
Sbjct: 471 ERLDAAAELLAEMLQKDCAPNVVTFNVLV 499



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 34/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S  V PD+YTY   + G+C  GR+ EA  +L+ M   G  P+ VTY  L++  C    
Sbjct: 136 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM  +G  P   TYN++I+ +  E ++ +A + L  +   G  PD+++Y  
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C     +    L  EM+ K   P  +T+  L+    +   +  A Q+ E     G
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +  + N +I+  C  G ++ AF  L  M      PD ++Y T++ G CR  + E+A+
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL +M R+   P+ ++FN                               +TYNAL+ G 
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           C     D A EL   M  K   P+  TY +L+ G+ +   +D AAE
Sbjct: 436 CVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 478



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 163/318 (51%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD+ +Y + + G+C+  R E+A  +L++M      P  VT+NT I   C KG 
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 405

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    ++M + G      TYN L++   ++ ++  A ++   M  K   P++ITY  
Sbjct: 406 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTT 462

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C       A  L  EM+ K   P ++T+  L+    ++  M EA +L E  +  G
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+++ +N L+DG   + N E A  LL  +    V PD VTY++++    R+ +VEEA 
Sbjct: 523 CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 582

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   ++  G++P  +        YN ++  LCK    D A +    MVS G  P++ TY
Sbjct: 583 KMFHIVQDLGMRPKAV-------IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 301 FSLIEGIASVDKAAESSN 318
            +LIEG+A+ D   E+ +
Sbjct: 636 ITLIEGLANEDFLKETRD 653



 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 149/293 (50%), Gaps = 10/293 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P+  T+ +F+  +C++G +E+A+ ++EQM E+G     VTYN L++G+C +G 
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M  +   P   TY  L+  L    ++  A ++L EM +K   P+ +T+N+
Sbjct: 441 VDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+ G   +A  L ++M+  G  P ++TY +L+  ++      EA +L    ++ G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNG 557

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++++I        +E A  +   +  + + P  V YN ++   C++   + A 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
                M   G  P+        LTY  LI+GL          +LLRE+ S+G+
Sbjct: 618 DFFAYMVSNGCMPNE-------LTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 10/247 (4%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           + +L  A    D    +G  P       LI  L    +  +A  +L+     G   D   
Sbjct: 56  RDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFA 115

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN L+ GYCR G    A  L   M    + P   TYT +I  L  + R+ EA  L ++ L
Sbjct: 116 YNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 172

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G  P +V +  L++  C +    +A  +L EM      P+ VTYN +++G CR+G+V+
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +AR  L+++   G +PD +S       Y  +++GLC  +  +  EEL  EM+ K   P++
Sbjct: 233 DAREFLNRLSSYGFQPDTVS-------YTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNE 285

Query: 298 NTYFSLI 304
            T+  L+
Sbjct: 286 VTFDMLV 292



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 92/182 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P+  T+   VS  C++G ++EA  ++EQM E+G  P  +TYNTL+DG  N  N
Sbjct: 483 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCN 542

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      +V  G+ P   TY+ +I  L  E ++ EA  M   + + G+ P ++ YN 
Sbjct: 543 SEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNK 602

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C+  N   A      M+  G  P  LTY +LI  L+ ++ + E   L     ++G
Sbjct: 603 ILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 662

Query: 181 ML 182
           +L
Sbjct: 663 VL 664



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 34/190 (17%)

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L  ++ + EA +L +   ++G  PD+ +   LI   C  G    A  +L+  +R     D
Sbjct: 53  LIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVD 112

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD------------------------- 254
              YNTL+ G CR G+++ ARRL+  M    + PD                         
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLD 169

Query: 255 ---HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA--- 308
              H    P+ +TY  L++ +CK+     A E+L EM +KG TP+  TY  +I G+    
Sbjct: 170 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229

Query: 309 SVDKAAESSN 318
            VD A E  N
Sbjct: 230 RVDDAREFLN 239


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 162/334 (48%), Gaps = 39/334 (11%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           SRG  PD Y     +  +C+ GR  +A+R+L   + +G       YNTL+ GYC  G L+
Sbjct: 71  SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLD 130

Query: 63  M--------------------------------AFSFRDEMVKQGIMPTASTYNLLIHEL 90
                                            A S  D+M+ +G  P+  TY +L+  +
Sbjct: 131 AARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAV 190

Query: 91  LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
                  +A ++L EM  KG  P+ +TYN++ING CR G    A    + +   G QP  
Sbjct: 191 CKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDT 250

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           ++YT+++  L    R  + ++LF   + K  +P+ V F+ L+   C  G +ERA  +L++
Sbjct: 251 VSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQ 310

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M       +    N +++  C+QG+V++A + L+ M   G  PD IS       Y  +++
Sbjct: 311 MSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTIS-------YTTVLK 363

Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
           GLC+ +  + A+ELL+EMV K   P++ T+ + I
Sbjct: 364 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFI 397



 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 31/344 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S G QPD+ +Y + + G+C   R E+   +  +M E   +P  VT++ L+  +C  G 
Sbjct: 241 LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGM 300

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    ++M   G     +  N++I+ +  + ++ +A   L  MG  G  PD+I+Y  
Sbjct: 301 VERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTT 360

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G CR    + A  L  EM+ K   P  +T+ + I +L ++  + +A  L E     G
Sbjct: 361 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +IV +NAL++G C  G ++ A  L   M      P+ +TY TL+ G C   +++ A 
Sbjct: 421 CEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAA 477

Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
            LL +M ++   P+ ++FN                            P  +TYN L+ G+
Sbjct: 478 ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGI 537

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            K+   + A ELL  +VS G++PD  TY S+I  ++  D+  E+
Sbjct: 538 TKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 581



 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 25/329 (7%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG QP   TY   +  +CK     +A  +L++M+  G  P  VTYN +I+G C +G 
Sbjct: 171 MLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGR 230

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A  F + +   G  P   +Y  ++  L   ++  + +++  EM EK  +P+ +T+++
Sbjct: 231 VDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDM 290

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+  +CR G  ++A  + ++M   G          +I  + KQ R+ +A Q   N  + G
Sbjct: 291 LVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG 350

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             PD + +  ++ G C     E A  LLKEM R    P+EVT+NT +   C++G +E+A 
Sbjct: 351 CSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQAT 410

Query: 241 RLLDQMKRRGIKPDHISFN-------------------------PTRLTYNALIQGLCKN 275
            L++QM   G + + +++N                         P  +TY  L+ GLC  
Sbjct: 411 MLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNA 470

Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLI 304
           +  D A ELL EM+ K   P+  T+  L+
Sbjct: 471 ERLDAAAELLAEMLQKDCAPNVVTFNVLV 499



 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 34/346 (9%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           + S  V PD+YTY   + G+C  GR+ EA  +L+ M   G  P+ VTY  L++  C    
Sbjct: 136 IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTG 195

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
              A    DEM  +G  P   TYN++I+ +  E ++ +A + L  +   G  PD+++Y  
Sbjct: 196 FGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++ G C     +    L  EM+ K   P  +T+  L+    +   +  A Q+ E     G
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG 315

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
              +  + N +I+  C  G ++ AF  L  M      PD ++Y T++ G CR  + E+A+
Sbjct: 316 CAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 241 RLLDQMKRRGIKPDHISFNP----------------------------TRLTYNALIQGL 272
            LL +M R+   P+ ++FN                               +TYNAL+ G 
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
           C     D A EL   M  K   P+  TY +L+ G+ +   +D AAE
Sbjct: 436 CVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 478



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 163/318 (51%), Gaps = 10/318 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M S G  PD+ +Y + + G+C+  R E+A  +L++M      P  VT+NT I   C KG 
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 405

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +E A    ++M + G      TYN L++   ++ ++  A ++   M  K   P++ITY  
Sbjct: 406 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTT 462

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L+ G C       A  L  EM+ K   P ++T+  L+    ++  M EA +L E  +  G
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+++ +N L+DG   + N E A  LL  +    V PD VTY++++    R+ +VEEA 
Sbjct: 523 CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAI 582

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++   ++  G++P  +        YN ++  LCK    D A +    MVS G  P++ TY
Sbjct: 583 KMFHIVQDLGMRPKAV-------IYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 301 FSLIEGIASVDKAAESSN 318
            +LIEG+A+ D   E+ +
Sbjct: 636 ITLIEGLANEDFLKETRD 653



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 150/293 (51%), Gaps = 10/293 (3%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P+  T+ +F+  +C++G +E+A+ ++EQM E+G     VTYN L++G+C +G 
Sbjct: 381 MVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 440

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           ++ A      M  +   P   TY  L+  L    ++  A ++L EM +K   P+ +T+N+
Sbjct: 441 VDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV 497

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           L++ +C+ G   +A  L ++M+  G  P ++TY +L+  ++K     EA +L    ++ G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 557

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           + PDIV ++++I        +E A  +   +  + + P  V YN ++   C++   + A 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
                M   G  P+        LTY  LI+GL          +LLRE+ S+G+
Sbjct: 618 DFFAYMVSNGCMPNE-------LTYITLIEGLANEDFLKETRDLLRELCSRGV 663



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 10/247 (4%)

Query: 58  KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
           + +L  A    D    +G  P       LI  L    +  +A  +L+     G   D   
Sbjct: 56  RDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFA 115

Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
           YN L+ GYCR G    A  L   M    + P   TYT +I  L  + R+ EA  L ++ L
Sbjct: 116 YNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 172

Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
            +G  P +V +  L++  C +    +A  +L EM      P+ VTYN +++G CR+G+V+
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
           +AR  L+++   G +PD +S       Y  +++GLC  +  +  EEL  EM+ K   P++
Sbjct: 233 DAREFLNRLSSYGFQPDTVS-------YTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNE 285

Query: 298 NTYFSLI 304
            T+  L+
Sbjct: 286 VTFDMLV 292



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 91/182 (50%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +   P+  T+   VS  C++G ++EA  ++EQM E+G  P  +TYNTL+DG     N
Sbjct: 483 MLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCN 542

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
            E A      +V  G+ P   TY+ +I  L  E ++ EA  M   + + G+ P ++ YN 
Sbjct: 543 SEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNK 602

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++   C+  N   A      M+  G  P  LTY +LI  L+ ++ + E   L     ++G
Sbjct: 603 ILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 662

Query: 181 ML 182
           +L
Sbjct: 663 VL 664



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 34/190 (17%)

Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
           L  ++ + EA +L +   ++G  PD+ +   LI   C  G    A  +L+  +R     D
Sbjct: 53  LIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVD 112

Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD------------------------- 254
              YNTL+ G CR G+++ ARRL+  M    + PD                         
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLD 169

Query: 255 ---HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA--- 308
              H    P+ +TY  L++ +CK+     A E+L EM +KG TP+  TY  +I G+    
Sbjct: 170 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229

Query: 309 SVDKAAESSN 318
            VD A E  N
Sbjct: 230 RVDDAREFLN 239


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 174/369 (47%), Gaps = 76/369 (20%)

Query: 8   PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP------------------------ 43
           P+ +T+   ++G+CK GRL EA     QM E   VP                        
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 44  --------TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIMPTASTYNLLI------- 87
                   + +T N LI+G+C    L+ A     EM K   ++P A+TY  +I       
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 88  -----HELLME---------------------RKMVEADDMLKEMGEK-GIVPDSITYNI 120
                 +LL E                     +++ EA  +L +M EK    PD + +N+
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G+C+ G  ++A+ + + ++  G  P  +TYT+LI    K   + EA QLF+   ++ 
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRD 240

Query: 181 --MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
               P++V FNALI G C    +E AF L+K+M    +  D  TY TLM G C+QG+  E
Sbjct: 241 HHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSE 300

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
             R+ ++M R G        NP+ +TY  L+   CK      A++++R MV+KGI PD  
Sbjct: 301 VSRVFEEMLREGC-------NPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVT 353

Query: 299 TYFSLIEGI 307
           TY  L+EG+
Sbjct: 354 TYTVLLEGL 362



 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 147/285 (51%), Gaps = 17/285 (5%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           ++ +  +PD   +   + G CK GR+ EA  MLE +   G VP AVTY TLIDG+C  GN
Sbjct: 166 VEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGN 225

Query: 61  LEMAF------SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
           L  A       S RD   +    P   T+N LI  L    ++  A +++K+M  + +  D
Sbjct: 226 LSEALQLFKVLSSRDHHAE----PNVVTFNALISGLCKADRLEHAFELVKQMKARDLRAD 281

Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
           + TY  L++G C+ G   +   + +EM+ +G  P+++TYT+L+    K   + +A Q+  
Sbjct: 282 TFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIR 341

Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
           + +AKG+ PD+  +  L++G   NG +  A    +++ R +  P  V Y+ L+ G C+  
Sbjct: 342 SMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAA 401

Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
            V+EA +   +M  R + PD     P   T   L++ LCK    D
Sbjct: 402 LVDEAVKYYVEMLDRRLAPD-----PA--TCKLLVEMLCKRGRTD 439



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 145/307 (47%), Gaps = 10/307 (3%)

Query: 2   KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGN 60
           +S     D     S   G CK  R++EA ++L  M E     P  V +N +I G+C  G 
Sbjct: 131 ESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGR 190

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG--IVPDSITY 118
           +  A+   + +V  G +P A TY  LI        + EA  + K +  +     P+ +T+
Sbjct: 191 VREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTF 250

Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
           N LI+G C+    + AF L  +M  + ++    TYT+L+  L KQ R  E  ++FE  L 
Sbjct: 251 NALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLR 310

Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
           +G  P +V +  L+  HC  G+++ A  +++ M    + PD  TY  L+ G    GKV  
Sbjct: 311 EGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRT 370

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A    +++ R    P  +        Y+AL++G CK    D A +   EM+ + + PD  
Sbjct: 371 ATEFFEKILRERCPPCAV-------VYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPA 423

Query: 299 TYFSLIE 305
           T   L+E
Sbjct: 424 TCKLLVE 430


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 166/310 (53%), Gaps = 7/310 (2%)

Query: 7   QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
           QP+   Y + ++G C+E +++E   +L QM E G+ P  +TY+T+I      GN+E+A +
Sbjct: 246 QPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALA 305

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
              +M  +G  P   T+  L+    M  +++EA ++   M E+G  P+ + YN LI+G C
Sbjct: 306 VWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLC 365

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
             G   +A S+  +M   G  P + TY +LI   +K   ++ A +++   +  G +P++V
Sbjct: 366 SHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVV 425

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
           ++ ++++  C +    +A+SL+++M      P+ VT+NT + G C  G+VE A  L  QM
Sbjct: 426 VYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQM 485

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
           ++ G  P+         TYN ++ GL K      A EL+ EM  KG+  +  TY ++  G
Sbjct: 486 EQYGCSPN-------IKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGG 538

Query: 307 IASVDKAAES 316
             +V K  E+
Sbjct: 539 FCNVGKFEEA 548



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 156/307 (50%), Gaps = 6/307 (1%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M   G +P+   Y + + G+C  G++ EA  +  +M+ NG  P   TY  LIDG+   G+
Sbjct: 345 MAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGD 404

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           L  A    ++M+  G +P    Y  +++ L       +A  ++++M      P+++T+N 
Sbjct: 405 LVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNT 464

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            I G C  G  + A +L  +M   G  P + TY  ++  L K+NR+ EA +L      KG
Sbjct: 465 FIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKG 524

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
           M  ++V +N +  G C  G  E A  LL +M    V PD +TYNTL +  C QGKV+ A 
Sbjct: 525 MELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAI 584

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           +LLD++   G       + P    Y +L+ G+C     + A   L +M+++GI  +  T+
Sbjct: 585 QLLDKLSAGG------KWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATW 638

Query: 301 FSLIEGI 307
            +L+ G+
Sbjct: 639 NALVRGL 645



 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 154/310 (49%), Gaps = 8/310 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  RG  P+ YT+ S + G    GR+ EA  +  +M E G  P  V YNTLI G C+ G 
Sbjct: 310 MFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGK 369

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A S   +M + G  P  STY  LI        +V A ++  +M   G +P+ + Y  
Sbjct: 370 MGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTS 429

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           ++N  CR     +A+SL ++M      P  +T+ + I  L    R+  A  LF      G
Sbjct: 430 MVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYG 489

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+I  +N ++DG      I+ A  L+ EM+   +  + VTYNT+  G C  GK EEA 
Sbjct: 490 CSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEAL 549

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-ITPDDNT 299
           +LL +M   G+KPD I++N   LTY   +QG  K      A +LL ++ + G   P+   
Sbjct: 550 KLLGKMLVGGVKPDAITYN--TLTYAYCMQGKVKT-----AIQLLDKLSAGGKWVPEVAA 602

Query: 300 YFSLIEGIAS 309
           Y SL+ GI +
Sbjct: 603 YTSLLWGICN 612



 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 156/303 (51%), Gaps = 7/303 (2%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M  +G+ P+  TY + +S +   G +E A  +  +M   G  P   T+ +L+ GY  +G 
Sbjct: 275 MVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGR 334

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A +  + M ++G  P    YN LIH L    KM EA  +  +M   G  P+  TY  
Sbjct: 335 VLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGA 394

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           LI+G+ + G+   A  + ++M+  G  P ++ YTS++ VL + +   +A  L E      
Sbjct: 395 LIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDN 454

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
             P+ V FN  I G C +G +E A +L  +M++    P+  TYN ++ G  ++ +++EA 
Sbjct: 455 CPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEAL 514

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
            L+ +M+ +G++ + +       TYN +  G C   + + A +LL +M+  G+ PD  TY
Sbjct: 515 ELVTEMEEKGMELNLV-------TYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITY 567

Query: 301 FSL 303
            +L
Sbjct: 568 NTL 570



 Score =  147 bits (370), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 156/336 (46%), Gaps = 41/336 (12%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           MK  G+      + + ++   + G  E+A +M  +++E G  PT   YN L+D   ++  
Sbjct: 105 MKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENR 164

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--- 117
            +M       M + G  P   TYN+L+  L    ++  A  +L EM  KG  PD ++   
Sbjct: 165 FQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTT 224

Query: 118 ---------------------------YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
                                      YN LING+CR    K+ F L  +M+ KGI P +
Sbjct: 225 VISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNV 284

Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
           +TY+++I  LS    +  A  ++     +G  P++  F +L+ G+   G +  A ++   
Sbjct: 285 ITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNR 344

Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
           M      P+ V YNTL+HG C  GK+ EA  +  +M+R G  P+ +S      TY ALI 
Sbjct: 345 MAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPN-VS------TYGALID 397

Query: 271 GLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLI 304
           G  K   GDL  A E+  +M++ G  P+   Y S++
Sbjct: 398 GFAK--AGDLVGASEIWNKMMTNGCIPNVVVYTSMV 431



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 33/334 (9%)

Query: 3   SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
           S+  Q    TY   +  + +E  ++    +L+QMK  G+  +   +  +I+ Y   G  E
Sbjct: 72  SKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAE 131

Query: 63  MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
            A      + + G  PT   YN L+  +L E +    + +   M   G  P+  TYNIL+
Sbjct: 132 QALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILL 191

Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
              C+      A  L  EM +KG +P +++YT++I  +SK  ++ EA +L   F      
Sbjct: 192 KALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRF-----Q 246

Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
           P++ ++NALI+G C    ++  F LL +M    + P+ +TY+T++      G VE A  +
Sbjct: 247 PNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAV 306

Query: 243 LDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCK 274
             +M  RG  P+  +F                             P  + YN LI GLC 
Sbjct: 307 WAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCS 366

Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
           + +   A  +  +M   G +P+ +TY +LI+G A
Sbjct: 367 HGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFA 400



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 117/250 (46%), Gaps = 15/250 (6%)

Query: 67  FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
           FR     +    T  TY ++I +L  E  +     +L++M  +GI      +  +IN Y 
Sbjct: 66  FRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYR 125

Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
           R G A++A  +   +   G QPT+  Y  L+  +  +NR    + ++ N    G  P++ 
Sbjct: 126 RVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVY 185

Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
            +N L+   C N  ++ A  LL EM      PD V+Y T++    + GKVEEAR L    
Sbjct: 186 TYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL---- 241

Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI-- 304
                    I F P    YNALI G C+  +      LL +MV KGI P+  TY ++I  
Sbjct: 242 --------SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISS 293

Query: 305 -EGIASVDKA 313
             GI +V+ A
Sbjct: 294 LSGIGNVELA 303


>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
          Length = 642

 Score =  177 bits (448), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 158/305 (51%), Gaps = 19/305 (6%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
           M    + P+SYTY   VSG+CKEG+  +A R+   ++   + P  VTY +L+  YC+KGN
Sbjct: 342 MAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGN 401

Query: 61  LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
           +  A    DEM ++G  P + TYN+L+  L    +  EA+ +L+ M EKG   D+   NI
Sbjct: 402 IAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCNI 461

Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
           +I+G CR      A  + D M  +G         S + V+S  +            +++ 
Sbjct: 462 IIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSS------------ISQR 509

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            LPD + ++ LI   C  G  + A   L EM    + PD V Y+T +HG C+ GK   A 
Sbjct: 510 CLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAI 569

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           ++L  M+++G        NP+  TYN LI+G  +  + D   +L+ EM  KG++P+  TY
Sbjct: 570 KVLRDMEKKGC-------NPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTY 622

Query: 301 FSLIE 305
            SLI+
Sbjct: 623 NSLIK 627



 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 172/377 (45%), Gaps = 69/377 (18%)

Query: 1   MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLV-PTAVTYNTLIDGYC 56
           M+ +G+ P+  T+ S +S +CK GR+ +A R+ + M+E+   GL  P  VT++ ++ G+C
Sbjct: 233 MRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFC 292

Query: 57  NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
           + G ++ A    D M   G +    +YN  +  L+   ++ EA ++L+EM  + I P+S 
Sbjct: 293 DAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREMAHERIHPNSY 352

Query: 117 TYNILING-----------------------------------YCRCGNAKKAFSLHDEM 141
           TYNI+++G                                   YC  GN   A  + DEM
Sbjct: 353 TYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEM 412

Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
             KG  P   TY  L+  L +  R  EA++L E    KG   D    N +IDG C N  +
Sbjct: 413 AQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKL 472

Query: 202 ERAFSLLKEMDR-----------------------MKVHPDEVTYNTLMHGRCRQGKVEE 238
           + A  ++  M                          +  PD +TY+ L+   C++G+ +E
Sbjct: 473 DVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDE 532

Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298
           A++ L +M  + I PD +        Y+  I G CK+ +  LA ++LR+M  KG  P   
Sbjct: 533 AKKKLLEMIVKDISPDSV-------IYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTR 585

Query: 299 TYFSLIEGIASVDKAAE 315
           TY  LI G     K+ E
Sbjct: 586 TYNLLIRGFEEKHKSDE 602



 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 168/389 (43%), Gaps = 96/389 (24%)

Query: 9   DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
           + +++G    G C+ GR  +A ++L+ M    LV      NT++ G+C +G +E A    
Sbjct: 175 NEFSFGILARGYCRAGRSVDALKVLDGMPSMNLV----VCNTVVAGFCKEGLVEEAERLV 230

Query: 69  DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGE---KGIV-PDSITYNILING 124
           + M  QG+ P   T+N  I  L    ++++A  + K+M E    G+  PD +T++++++G
Sbjct: 231 ERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSG 290

Query: 125 YC---------------RCGN--------------------AKKAFSLHDEMIHKGIQPT 149
           +C               RCG                       +A  L  EM H+ I P 
Sbjct: 291 FCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREMAHERIHPN 350

Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLL 208
             TY  ++  L K+ +  +A ++ ENF+  G++ PD+V + +L+  +C+ GNI  A  +L
Sbjct: 351 SYTYNIIVSGLCKEGKAFDARRV-ENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRIL 409

Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN--------- 259
            EM +    P+  TYN L+    R G+  EA RLL++M  +G   D    N         
Sbjct: 410 DEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRN 469

Query: 260 ------------------------------------------PTRLTYNALIQGLCKNQE 277
                                                     P R+TY+ LI  LCK   
Sbjct: 470 SKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGR 529

Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG 306
            D A++ L EM+ K I+PD   Y + I G
Sbjct: 530 FDEAKKKLLEMIVKDISPDSVIYDTFIHG 558



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 143/316 (45%), Gaps = 19/316 (6%)

Query: 5   GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
           G QPD +T    +  +C  GR+E A R+ E M     V    ++  L  GYC  G    A
Sbjct: 140 GAQPDVFTRNLLLRALCDAGRMELAQRVFEAMP----VRNEFSFGILARGYCRAGRSVDA 195

Query: 65  FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
               D M    ++   +       E L+E    EA+ +++ M  +G+ P+ +T+N  I+ 
Sbjct: 196 LKVLDGMPSMNLVVCNTVVAGFCKEGLVE----EAERLVERMRVQGLAPNVVTFNSRISA 251

Query: 125 YCRCGNAKKAFSLHDEMI----HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
            C+ G    A+ +  +M     H   +P  +T+  ++        + EA  L +     G
Sbjct: 252 LCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGG 311

Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
            L  +  +N  + G   NG +  A  LL+EM   ++HP+  TYN ++ G C++GK  +AR
Sbjct: 312 FLRRVESYNRWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDAR 371

Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
           R+ +   R G+       +P  +TY +L+   C       A  +L EM  KG  P+  TY
Sbjct: 372 RV-ENFIRSGV------MSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTY 424

Query: 301 FSLIEGIASVDKAAES 316
             L++ +    +  E+
Sbjct: 425 NVLLQSLWRAGRTTEA 440



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 24/294 (8%)

Query: 29  ASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88
           A R L  +      PT V YN LI     +  L++  +   +++  G  P   T NLL+ 
Sbjct: 95  AFRSLRALASAPPPPTPV-YNRLILTALRESRLDLVEALYKDLLLAGAQPDVFTRNLLLR 153

Query: 89  ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
            L    +M  A  + + M     V +  ++ IL  GYCR G +  A  + D M      P
Sbjct: 154 ALCDAGRMELAQRVFEAMP----VRNEFSFGILARGYCRAGRSVDALKVLDGM------P 203

Query: 149 TM--LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
           +M  +   +++    K+  + EA++L E    +G+ P++V FN+ I   C  G +  A+ 
Sbjct: 204 SMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYR 263

Query: 207 LLKEMDRMKVH----PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
           + K+M     H    PD+VT++ ++ G C  G V+EAR L+D M+  G       F    
Sbjct: 264 IFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGG-------FLRRV 316

Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
            +YN  + GL +N     A ELLREM  + I P+  TY  ++ G+    KA ++
Sbjct: 317 ESYNRWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDA 370


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,816,452,569
Number of Sequences: 23463169
Number of extensions: 191068927
Number of successful extensions: 761142
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8832
Number of HSP's successfully gapped in prelim test: 4274
Number of HSP's that attempted gapping in prelim test: 511299
Number of HSP's gapped (non-prelim): 88597
length of query: 319
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 177
effective length of database: 9,027,425,369
effective search space: 1597854290313
effective search space used: 1597854290313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)