BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039029
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/347 (57%), Positives = 254/347 (73%), Gaps = 33/347 (9%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MKS+G QPD TY +S MC EGR AS +L +MKE GLVP +V+YN LI G N G+
Sbjct: 286 MKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGD 342
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
LEMAF++RDEMVKQG++PT TYN LIH L ME K+ A+ +++E+ EKGIV DS+TYNI
Sbjct: 343 LEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNI 402
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LINGYC+ G+AKKAF+LHDEM+ GIQPT TYTSLI+VL ++N+ EAD+LFE + KG
Sbjct: 403 LINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKG 462
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
M PD+VM N L+DGHC GN++RAFSLLKEMD M ++PD+VTYN LM G C +GK EEAR
Sbjct: 463 MKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEAR 522
Query: 241 RLLDQMKRRGIKPDHIS----------------------------FNPTRLTYNALIQGL 272
L+ +MKRRGIKPDHIS FNPT LTYNAL++GL
Sbjct: 523 ELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGL 582
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
KNQEG+LAEELLREM S+GI P+D+++ S+IE ++++D A+ S+S
Sbjct: 583 SKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLD--AKKSDS 627
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 185/329 (56%), Gaps = 31/329 (9%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
++ + YT+ ++ +CKEG+L++A L M+ G+ PT VTYNTL+ G+ +G +E A
Sbjct: 221 IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGAR 280
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
EM +G P TYN ++ + E + A ++L+EM E G+VPDS++YNILI G
Sbjct: 281 LIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGC 337
Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
G+ + AF+ DEM+ +G+ PT TY +LI L +N++ A+ L KG++ D
Sbjct: 338 SNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDS 397
Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
V +N LI+G+C +G+ ++AF+L EM + P + TY +L++ CR+ K EA L ++
Sbjct: 398 VTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEK 457
Query: 246 MKRRGIKPDHI----------------------------SFNPTRLTYNALIQGLCKNQE 277
+ +G+KPD + S NP +TYN L++GLC +
Sbjct: 458 VVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGK 517
Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEG 306
+ A EL+ EM +GI PD +Y +LI G
Sbjct: 518 FEEARELMGEMKRRGIKPDHISYNTLISG 546
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 148/301 (49%), Gaps = 10/301 (3%)
Query: 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
V C+ ++EA MKE G P T N ++ +E A+ F +M +
Sbjct: 161 LVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRME 220
Query: 76 IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135
I T+N++I+ L E K+ +A L M GI P +TYN L+ G+ G + A
Sbjct: 221 IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGAR 280
Query: 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195
+ EM KG QP M TY ++ + + R A ++ G++PD V +N LI G
Sbjct: 281 LIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGC 337
Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
NG++E AF+ EM + + P TYNTL+HG + K+E A L+ +++ +GI D
Sbjct: 338 SNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDS 397
Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
+ TYN LI G C++ + A L EM++ GI P TY SLI + +K E
Sbjct: 398 V-------TYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTRE 450
Query: 316 S 316
+
Sbjct: 451 A 451
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 10/263 (3%)
Query: 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103
+ + ++ L+ C ++ A M ++G P T N ++ L ++ A
Sbjct: 154 STILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFY 213
Query: 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
+M I + T+NI+IN C+ G KKA M GI+PT++TY +L+ S +
Sbjct: 214 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLR 273
Query: 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223
R+ A + +KG PD+ +N ++ C G RA +L+EM + + PD V+Y
Sbjct: 274 GRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSY 330
Query: 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283
N L+ G G +E A D+M ++G+ PT TYN LI GL + + AE
Sbjct: 331 NILIRGCSNNGDLEMAFAYRDEMVKQGMV-------PTFYTYNTLIHGLFMENKIEAAEI 383
Query: 284 LLREMVSKGITPDDNTYFSLIEG 306
L+RE+ KGI D TY LI G
Sbjct: 384 LIREIREKGIVLDSVTYNILING 406
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 10/195 (5%)
Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
+I +++L+ C+ +A M KG P T ++ +LS+ NR+ A +
Sbjct: 155 TILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYA 214
Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
+ + ++ FN +I+ C G +++A L M+ + P VTYNTL+ G +G
Sbjct: 215 DMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRG 274
Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
++E AR ++ +MK +G +PD ++NP ++ +C EG A E+LREM G+
Sbjct: 275 RIEGARLIISEMKSKGFQPDMQTYNP-------ILSWMC--NEGR-ASEVLREMKEIGLV 324
Query: 295 PDDNTYFSLIEGIAS 309
PD +Y LI G ++
Sbjct: 325 PDSVSYNILIRGCSN 339
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 231 bits (589), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 181/305 (59%), Gaps = 7/305 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK +G++P+SY YGS + +C+ +L EA +M G++P V Y TLIDG+C +G+
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A F EM + I P TY +I MVEA + EM KG+ PDS+T+
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LINGYC+ G+ K AF +H+ MI G P ++TYT+LI L K+ + A++L G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+I +N++++G C +GNIE A L+ E + ++ D VTY TLM C+ G++++A+
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L +M +G++ PT +T+N L+ G C + + E+LL M++KGI P+ T+
Sbjct: 547 EILKEMLGKGLQ-------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 599
Query: 301 FSLIE 305
SL++
Sbjct: 600 NSLVK 604
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 177/314 (56%), Gaps = 10/314 (3%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
GV + +Y + +C+ GR++EA +L M+ G P ++Y+T+++GYC G L+
Sbjct: 241 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 300
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
+ + M ++G+ P + Y +I L K+ EA++ EM +GI+PD++ Y LI+G
Sbjct: 301 WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDG 360
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
+C+ G+ + A EM + I P +LTYT++I + M+EA +LF KG+ PD
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
V F LI+G+C G+++ AF + M + P+ VTY TL+ G C++G ++ A LL
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
+M + G++P+ TYN+++ GLCK+ + A +L+ E + G+ D TY +L+
Sbjct: 481 EMWKIGLQPN-------IFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533
Query: 305 EGIAS---VDKAAE 315
+ +DKA E
Sbjct: 534 DAYCKSGEMDKAQE 547
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 167/316 (52%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M SR + PD TY + +SG C+ G + EA ++ +M GL P +VT+ LI+GYC G+
Sbjct: 377 MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGH 436
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ AF + M++ G P TY LI L E + A+++L EM + G+ P+ TYN
Sbjct: 437 MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++NG C+ GN ++A L E G+ +TYT+L+ K M +A ++ + L KG
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P IV FN L++G C +G +E LL M + P+ T+N+L+ C + ++ A
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAAT 616
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ M RG+ PD TY L++G CK + A L +EM KG + +TY
Sbjct: 617 AIYKDMCSRGVGPDG-------KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTY 669
Query: 301 FSLIEGIASVDKAAES 316
LI+G K E+
Sbjct: 670 SVLIKGFLKRKKFLEA 685
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 163/300 (54%), Gaps = 7/300 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G++PDS T+ ++G CK G +++A R+ M + G P VTY TLIDG C +G+
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 471
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A EM K G+ P TYN +++ L + EA ++ E G+ D++TY
Sbjct: 472 LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT 531
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++ YC+ G KA + EM+ KG+QPT++T+ L+ + + ++L LAKG
Sbjct: 532 LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+ FN+L+ +C N++ A ++ K+M V PD TY L+ G C+ ++EA
Sbjct: 592 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 651
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +MK +G F+ + TY+ LI+G K ++ A E+ +M +G+ D +
Sbjct: 652 FLFQEMKGKG-------FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704
Score = 174 bits (440), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 164/331 (49%), Gaps = 33/331 (9%)
Query: 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV---PTAVTYNTLIDGYCNKGNLEMAF 65
D + F + G L EA R+ E+M GLV + Y T + C K +
Sbjct: 174 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAI-I 232
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
FR E + G+ ++YN++IH + ++ EA +L M KG PD I+Y+ ++NGY
Sbjct: 233 VFR-EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGY 291
Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
CR G K + L + M KG++P Y S+I +L + ++ EA++ F + +G+LPD
Sbjct: 292 CRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDT 351
Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
V++ LIDG C G+I A EM + PD +TY ++ G C+ G + EA +L +
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 411
Query: 246 MKRRGIKPDHISF----------------------------NPTRLTYNALIQGLCKNQE 277
M +G++PD ++F +P +TY LI GLCK +
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 471
Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
D A ELL EM G+ P+ TY S++ G+
Sbjct: 472 LDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 139/259 (53%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G P+ TY + + G+CKEG L+ A+ +L +M + GL P TYN++++G C GN
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A E G+ TY L+ +M +A ++LKEM KG+ P +T+N+
Sbjct: 507 IEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNV 566
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+NG+C G + L + M+ KGI P T+ SL+ +N + A ++++ ++G
Sbjct: 567 LMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD + L+ GHC N++ A+ L +EM TY+ L+ G ++ K EAR
Sbjct: 627 VGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAR 686
Query: 241 RLLDQMKRRGIKPDHISFN 259
+ DQM+R G+ D F+
Sbjct: 687 EVFDQMRREGLAADKEIFD 705
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 109/193 (56%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
++ G+ D+ TY + + CK G +++A +L++M GL PT VT+N L++G+C G
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
LE + M+ +GI P A+T+N L+ + + + A + K+M +G+ PD TY
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+ G+C+ N K+A+ L EM KG ++ TY+ LI K+ + +EA ++F+ +G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696
Query: 181 MLPDIVMFNALID 193
+ D +F+ D
Sbjct: 697 LAADKEIFDFFSD 709
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 8/153 (5%)
Query: 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNG-NIERAFSLLKEMDRMKVHPDEVTYNTL 226
EA ++FE L G++ + N + + A + +E + V + +YN +
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252
Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
+H C+ G+++EA LL M+ +G PD IS Y+ ++ G C+ E D +L+
Sbjct: 253 IHFVCQLGRIKEAHHLLLLMELKGYTPDVIS-------YSTVVNGYCRFGELDKVWKLIE 305
Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319
M KG+ P+ Y S+I + + K AE+ +
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEA 338
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 176/313 (56%), Gaps = 7/313 (2%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
V P+ +TY + G C G ++ A + ++M+ G +P VTYNTLIDGYC ++ F
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGF 260
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
M +G+ P +YN++I+ L E +M E +L EM +G D +TYN LI GY
Sbjct: 261 KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGY 320
Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
C+ GN +A +H EM+ G+ P+++TYTSLI + K M A + + +G+ P+
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE 380
Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
+ L+DG G + A+ +L+EM+ P VTYN L++G C GK+E+A +L+
Sbjct: 381 RTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED 440
Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
MK +G+ PD +S Y+ ++ G C++ + D A + REMV KGI PD TY SLI+
Sbjct: 441 MKEKGLSPDVVS-------YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Query: 306 GIASVDKAAESSN 318
G + E+ +
Sbjct: 494 GFCEQRRTKEACD 506
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 176/318 (55%), Gaps = 11/318 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G++P+ +Y ++G+C+EGR++E S +L +M G VTYNTLI GYC +GN
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A EM++ G+ P+ TY LIH + M A + L +M +G+ P+ TY
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G+ + G +A+ + EM G P+++TY +LI +M +A + E+ KG
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+V ++ ++ G C + +++ A + +EM + PD +TY++L+ G C Q + +EA
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
L ++M R G+ PD TY ALI C EGDL A +L EMV KG+ PD
Sbjct: 506 DLYEEMLRVGLPPD-------EFTYTALINAYC--MEGDLEKALQLHNEMVEKGVLPDVV 556
Query: 299 TYFSLIEGIASVDKAAES 316
TY LI G+ + E+
Sbjct: 557 TYSVLINGLNKQSRTREA 574
Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 170/314 (54%), Gaps = 8/314 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G+ P TY S + MCK G + A L+QM+ GL P TY TL+DG+ KG
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A+ EM G P+ TYN LI+ + KM +A +L++M EKG+ PD ++Y+
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+++G+CR + +A + EM+ KGI+P +TY+SLI +Q R EA L+E L G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD + ALI+ +C G++E+A L EM V PD VTY+ L++G +Q + EA+
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575
Query: 241 RLLDQMKRRGIKPDHISF-----NPTRLTYN---ALIQGLCKNQEGDLAEELLREMVSKG 292
RLL ++ P +++ N + + + +LI+G C A+++ M+ K
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKN 635
Query: 293 ITPDDNTYFSLIEG 306
PD Y +I G
Sbjct: 636 HKPDGTAYNIMIHG 649
Score = 178 bits (451), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 163/298 (54%), Gaps = 26/298 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G P TY + ++G C G++E+A +LE MKE GL P V+Y+T++ G+C +
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + EMV++GI P TY+ LI +R+ EA D+ +EM G+ PD TY
Sbjct: 466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTA 525
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LIN YC G+ +KA LH+EM+ KG+ P ++TY+ LI L+KQ+R EA +L +
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLK---------EMDRM------KVH-PDEVTYN 224
+P V ++ LI+ +C+N + SL+K E D++ K H PD YN
Sbjct: 586 SVPSDVTYHTLIE-NCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYN 644
Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
++HG CR G + +A L +M + G F +T AL++ L ++EG + E
Sbjct: 645 IMIHGHCRAGDIRKAYTLYKEMVKSG-------FLLHTVTVIALVKAL--HKEGKVNE 693
Score = 154 bits (389), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 153/285 (53%), Gaps = 10/285 (3%)
Query: 27 EEASRMLEQMKE--NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
E AS + + ++E + T+ ++ ++ Y ++ A S G MP +YN
Sbjct: 114 EYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYN 173
Query: 85 LLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
++ + ++ + A+++ KEM E + P+ TYNILI G+C GN A +L D+M
Sbjct: 174 AVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMET 233
Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
KG P ++TY +LI K ++ + +L + KG+ P+++ +N +I+G C G ++
Sbjct: 234 KGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE 293
Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
+L EM+R DEVTYNTL+ G C++G +A + +M R G+ P+ +
Sbjct: 294 VSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL-------TPSVI 346
Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
TY +LI +CK + A E L +M +G+ P++ TY +L++G +
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 50/272 (18%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G++PD+ TY S + G C++ R +EA + E+M GL P TY LI+ YC +G+
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD 535
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLI-------------------------------HE 89
LE A +EMV++G++P TY++LI H
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHT 595
Query: 90 LL-------------------MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
L+ M+ M EAD + + M K PD YNI+I+G+CR G+
Sbjct: 596 LIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGD 655
Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
+KA++L+ EM+ G +T +L+ L K+ ++ E + + + L L +
Sbjct: 656 IRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKV 715
Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
L++ + GN++ +L EM + P+ ++
Sbjct: 716 LVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 214 bits (545), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 177/309 (57%), Gaps = 11/309 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN--- 57
M R +QP+ +T+ ++ +CK G++ +A ++E MK G P V+YNTLIDGYC
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGG 273
Query: 58 KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
G + A + EMV+ + P +T+N+LI + + + + KEM ++ + P+ I+
Sbjct: 274 NGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVIS 333
Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
YN LING C G +A S+ D+M+ G+QP ++TY +LI K + + EA +F +
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393
Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
+G +P M+N LID +C G I+ F+L +EM+R + PD TYN L+ G CR G +E
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE 453
Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
A++L DQ+ +G+ P +T++ L++G C+ E A LL+EM G+ P
Sbjct: 454 AAKKLFDQLTSKGL--------PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRH 505
Query: 298 NTYFSLIEG 306
TY +++G
Sbjct: 506 LTYNIVMKG 514
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 165/296 (55%), Gaps = 9/296 (3%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
V P+ T+ + G K+ L + ++ ++M + + P ++YN+LI+G CN G + A
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAI 351
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
S RD+MV G+ P TYN LI+ + EA DM + +G VP + YN+LI+ Y
Sbjct: 352 SMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411
Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
C+ G F+L +EM +GI P + TY LI L + + A +LF+ +KG LPD+
Sbjct: 412 CKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDL 470
Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
V F+ L++G+C G +A LLKEM +M + P +TYN +M G C++G ++ A + Q
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530
Query: 246 M-KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
M K R ++ + S YN L+QG + + + A LL EM+ KG+ P+ TY
Sbjct: 531 MEKERRLRMNVAS-------YNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 148/326 (45%), Gaps = 32/326 (9%)
Query: 15 SFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73
SF+ G + G + + + + + ++ + L+ Y N E+ F
Sbjct: 122 SFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGY 181
Query: 74 QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133
G +A + L+ LL E + + + + KEM + I P+ T+N++IN C+ G K
Sbjct: 182 YGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNK 241
Query: 134 AFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
A + ++M G P +++Y +LI L +M +AD + + + + P++ FN
Sbjct: 242 ARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNI 301
Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
LIDG + N+ + + KEM V P+ ++YN+L++G C GK+ EA + D+M G
Sbjct: 302 LIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAG 361
Query: 251 IKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAE 282
++P+ I++N PT YN LI CK + D
Sbjct: 362 VQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGF 421
Query: 283 ELLREMVSKGITPDDNTYFSLIEGIA 308
L EM +GI PD TY LI G+
Sbjct: 422 ALKEEMEREGIVPDVGTYNCLIAGLC 447
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 31/237 (13%)
Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
+ +SI ++L+ Y + F + G + + L+ L+ L K+NR + +
Sbjct: 149 VCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVE 208
Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
+++ + + + P++ FN +I+ C G + +A ++++M P+ V+YNTL+ G
Sbjct: 209 YVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGY 268
Query: 231 CR---QGKVEEARRLLDQMKRRGIKPDHISFN---------------------------- 259
C+ GK+ +A +L +M + P+ +FN
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVK 328
Query: 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
P ++YN+LI GLC + A + +MVS G+ P+ TY +LI G D E+
Sbjct: 329 PNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEA 385
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 78/122 (63%), Gaps = 2/122 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+ S+G+ PD T+ + G C++G +A+ +L++M + GL P +TYN ++ GYC +GN
Sbjct: 462 LTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGN 520
Query: 61 LEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
L+ A + R +M K+ + ++YN+L+ + K+ +A+ +L EM EKG+VP+ ITY
Sbjct: 521 LKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYE 580
Query: 120 IL 121
I+
Sbjct: 581 IV 582
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM-KENGLVPTAVTYNTLIDGYCNKG 59
M G++P TY + G CKEG L+ A+ M QM KE L +YN L+ GY KG
Sbjct: 496 MSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555
Query: 60 NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
LE A +EM+++G++P TY E++ E EM ++G VPD
Sbjct: 556 KLEDANMLLNEMLEKGLVPNRITY-----EIVKE-----------EMVDQGFVPD 594
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 8/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M ++G++PD +TY S +S +C GR +ASR+L M E + P VT+N+LID + +G
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A DEM+++ I P TYN LI+ M ++ EA + M K +PD +TYN
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNT 385
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING+C+ L +M +G+ +TYT+LI + + A +F+ ++ G
Sbjct: 386 LINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG 445
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+I+ +N L+DG C NG +E+A + + + + K+ PD TYN + G C+ GKVE+
Sbjct: 446 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGW 505
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KPD I+ YN +I G CK + A L +M G PD TY
Sbjct: 506 DLFCSLSLKGVKPDVIA-------YNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558
Query: 301 FSLIEG-IASVDKAAES 316
+LI + DKAA +
Sbjct: 559 NTLIRAHLRDGDKAASA 575
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 169/308 (54%), Gaps = 7/308 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G QPD+ T+ + V G+ + + EA ++E+M G P VTY +I+G C +G
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGE 220
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++A + ++M K I Y+ +I L R + +A ++ EM KGI PD TY+
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ C G A L +M+ + I P ++T+ SLI +K+ ++IEA++LF+ + +
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+IV +N+LI+G C + ++ A + M PD VTYNTL++G C+ KV +
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGM 400
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L M RRG+ + + TY LI G + + D A+ + ++MVS G+ P+ TY
Sbjct: 401 ELFRDMSRRGLVGNTV-------TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 301 FSLIEGIA 308
+L++G+
Sbjct: 454 NTLLDGLC 461
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 170/315 (53%), Gaps = 7/315 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ GV + YTY ++ +C+ +L A +L +M + G P+ VT N+L++G+C+
Sbjct: 91 MEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNR 150
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + D+MV+ G P T+ L+H L K EA +++ M KG PD +TY
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 210
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+ING C+ G A +L ++M I+ ++ Y+++I L K + +A LF KG
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+ +++LI C G A LL +M K++P+ VT+N+L+ ++GK+ EA
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L D+M +R I P+ + TYN+LI G C + D A+++ MVSK PD TY
Sbjct: 331 KLFDEMIQRSIDPNIV-------TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383
Query: 301 FSLIEGIASVDKAAE 315
+LI G K +
Sbjct: 384 NTLINGFCKAKKVVD 398
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 167/315 (53%), Gaps = 7/315 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G QPD TYG+ ++G+CK G + A +L +M++ + V Y+T+ID C +
Sbjct: 196 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRH 255
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + EM +GI P TY+ LI L + +A +L +M E+ I P+ +T+N
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNS 315
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A L DEMI + I P ++TY SLI +R+ EA Q+F ++K
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
LPD+V +N LI+G C + L ++M R + + VTY TL+HG + + A+
Sbjct: 376 CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQ 435
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ QM G+ +P +TYN L+ GLCKN + + A + + + PD TY
Sbjct: 436 MVFKQMVSDGV-------HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTY 488
Query: 301 FSLIEGIASVDKAAE 315
+ EG+ K +
Sbjct: 489 NIMSEGMCKAGKVED 503
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 172/356 (48%), Gaps = 45/356 (12%)
Query: 4 RGVQPDSYTYGSFVSGMCKEG-------------RLEEASRMLEQMKENGLVPTAVTYNT 50
R P G + SG+ +G +L+EA + +M ++ P+ V ++
Sbjct: 11 RKASPSFCLRGIYFSGLSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSK 70
Query: 51 LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110
L+ ++ SF ++M G+ TYN++I+ L ++ A +L +M + G
Sbjct: 71 LLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLG 130
Query: 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170
P +T N L+NG+C +A +L D+M+ G QP +T+T+L+ L + N+ EA
Sbjct: 131 YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV 190
Query: 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230
L E + KG PD+V + A+I+G C G + A +LL +M++ K+ D V Y+T++
Sbjct: 191 ALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSL 250
Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISF----------------------------NPTR 262
C+ V++A L +M +GI+PD ++ NP
Sbjct: 251 CKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNV 310
Query: 263 LTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
+T+N+LI K EG L AE+L EM+ + I P+ TY SLI G D+ E+
Sbjct: 311 VTFNSLIDAFAK--EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 364
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 124/247 (50%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + P+ TY S ++G C RL+EA ++ M +P VTYNTLI+G+C
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ +M ++G++ TY LIH A + K+M G+ P+ +TYN
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C+ G +KA + + + ++P + TY + + K ++ + LF + KG
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD++ +N +I G C G E A++L +M PD TYNTL+ R G +
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 575
Query: 241 RLLDQMK 247
L+ +M+
Sbjct: 576 ELIKEMR 582
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 4/241 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S+ PD TY + ++G CK ++ + + M GLV VTY TLI G+ +
Sbjct: 371 MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASD 430
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A +MV G+ P TYN L+ L K+ +A + + + + + PD TYNI
Sbjct: 431 CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNI 490
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+ G C+ G + + L + KG++P ++ Y ++I K+ EA LF G
Sbjct: 491 MSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDG 550
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY----NTLMHGRCRQGKV 236
LPD +N LI H +G+ + L+KEM + D TY + L GR +G +
Sbjct: 551 PLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFL 610
Query: 237 E 237
E
Sbjct: 611 E 611
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 7/228 (3%)
Query: 91 LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
L+ K+ EA D+ EM + P + ++ L++ + S ++M G+ +
Sbjct: 41 LLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNL 100
Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
TY +I L +++++ A + + G P IV N+L++G C I A +L+ +
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160
Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
M M PD VT+ TL+HG + K EA L+++M +G +PD + TY A+I
Sbjct: 161 MVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV-------TYGAVIN 213
Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
GLCK E DLA LL +M I D Y ++I+ + ++ N
Sbjct: 214 GLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 211 bits (536), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 185/316 (58%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ RG PD TY V+G+CKEGRL+EA + L M +G P +T+N ++ C+ G
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A +M+++G P+ T+N+LI+ L + + A D+L++M + G P+S++YN
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G+C+ +A + M+ +G P ++TY +++ L K ++ +A ++ +KG
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P ++ +N +IDG G +A LL EM + PD +TY++L+ G R+GKV+EA
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ + +R GI+P+ + T+N+++ GLCK+++ D A + L M+++G P++ +Y
Sbjct: 505 KFFHEFERMGIRPNAV-------TFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSY 557
Query: 301 FSLIEGIASVDKAAES 316
LIEG+A A E+
Sbjct: 558 TILIEGLAYEGMAKEA 573
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 175/316 (55%), Gaps = 10/316 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
++ G PD TY +SG CK G + A +L++M + P VTYNT++ C+ G
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGK 219
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A D M+++ P TY +LI + + A +L EM ++G PD +TYN+
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+NG C+ G +A ++M G QP ++T+ ++ + R ++A++L + L KG
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG 339
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P +V FN LI+ C G + RA +L++M + P+ ++YN L+HG C++ K++ A
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI 399
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L++M RG PD + TYN ++ LCK+ + + A E+L ++ SKG +P TY
Sbjct: 400 EYLERMVSRGCYPDIV-------TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY 452
Query: 301 FSLIEGIASVDKAAES 316
++I+G+A K ++
Sbjct: 453 NTVIDGLAKAGKTGKA 468
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 31/325 (9%)
Query: 20 MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79
M + G LEE + LE M +G VP + TLI G+C G A + + G +P
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171
Query: 80 ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139
TYN++I K E ++ L + + PD +TYN ++ C G K+A + D
Sbjct: 172 VITYNVMISGYC---KAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
M+ + P ++TYT LI + + + A +L + +G PD+V +N L++G C G
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288
Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
++ A L +M P+ +T+N ++ C G+ +A +LL M R+G P ++FN
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348
Query: 260 ----------------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
P L+YN L+ G CK ++ D A E L MVS+
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408
Query: 292 GITPDDNTYFSLIEGIASVDKAAES 316
G PD TY +++ + K ++
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDA 433
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 141/251 (56%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G P T+ ++ +C++G L A +LE+M ++G P +++YN L+ G+C +
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + + MV +G P TYN ++ L + K+ +A ++L ++ KG P ITYN
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I+G + G KA L DEM K ++P +TY+SL+ LS++ ++ EA + F F G
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+ V FN+++ G C + +RA L M P+E +Y L+ G +G +EA
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574
Query: 241 RLLDQMKRRGI 251
LL+++ +G+
Sbjct: 575 ELLNELCNKGL 585
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 27/288 (9%)
Query: 35 QMKENGLVPTAVTYNTLIDGYCNK-GN-----LEMAFSFRDEMVKQGIMPTASTYNLLIH 88
+++ +GL A + TL GY N GN + +F+ D N +
Sbjct: 62 KVESSGLNGRAQKFETLSSGYSNSNGNGHYSSVNSSFALED-----------VESNNHLR 110
Query: 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP 148
+++ ++ E L+ M G VPD I LI G+CR G +KA + + + G P
Sbjct: 111 QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVP 170
Query: 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208
++TY +I K + A + + + PD+V +N ++ C +G +++A +L
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
M + +PD +TY L+ CR V A +LLD+M+ RG PD + TYN L
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVV-------TYNVL 280
Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
+ G+CK D A + L +M S G P+ T+ ++ + S + ++
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M SRG PD TY + ++ +CK+G++E+A +L Q+ G P +TYNT+IDG G
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A DEM + + P TY+ L+ L E K+ EA E GI P+++T+N
Sbjct: 465 TGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNS 524
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++ G C+ +A MI++G +P +YT LI L+ + EA +L KG
Sbjct: 525 IMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
Query: 181 ML 182
++
Sbjct: 585 LM 586
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 67/115 (58%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++ ++PD+ TY S V G+ +EG+++EA + + + G+ P AVT+N+++ G C
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQ 534
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
+ A F M+ +G P ++Y +LI L E EA ++L E+ KG++ S
Sbjct: 535 TDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKS 589
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G++P++ T+ S + G+CK + + A L M G P +Y LI+G +G + A
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Query: 65 FSFRDEMVKQGIMPTAST 82
+E+ +G+M +S
Sbjct: 574 LELLNELCNKGLMKKSSA 591
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G++ D TY S + G+C +G+ ++ ++ML +M ++P VT++ LID + +G
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A +EM+ +GI P TYN LI E + EA+ M M KG PD +TY+I
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LIN YC+ L E+ KG+ P +TY +L+ + ++ A +LF+ +++G
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P +V + L+DG C NG + +A + ++M + ++ YN ++HG C KV++A
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KPD + TYN +I GLCK A+ L R+M G TPDD TY
Sbjct: 511 SLFCSLSDKGVKPDVV-------TYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY 563
Query: 301 FSLIEG 306
LI
Sbjct: 564 NILIRA 569
Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 181/342 (52%), Gaps = 31/342 (9%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G +PD+ T+ + V+G C EGR+ EA ++++M E P VT +TLI+G C KG + A
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
D MV+ G P TY +++ L A D+ ++M E+ I + Y+I+I+
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ G+ A SL +EM KGI+ ++TY+SLI L + + ++ + + ++PD
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+V F+ALID G + A L EM + PD +TYN+L+ G C++ + EA ++ D
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFD 374
Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
M +G +PD ++++ P +TYN L+ G C++
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSG 434
Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
+ + A+EL +EMVS+G+ P TY L++G+ ++KA E
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 177/344 (51%), Gaps = 28/344 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G QPD TYG ++ +CK G A + +M+E + + V Y+ +ID C G+
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A S +EM +GI TY+ LI L + K + ML+EM + I+PD +T++
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A L++EMI +GI P +TY SLI K+N + EA+Q+F+ ++KG
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PDIV ++ LI+ +C ++ L +E+ + P+ +TYNTL+ G C+ GK+ A+
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440
Query: 241 RLLDQMKRRGIKPDHISF-----------------------NPTRLT-----YNALIQGL 272
L +M RG+ P +++ +R+T YN +I G+
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
C + D A L + KG+ PD TY +I G+ +E+
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 164/304 (53%), Gaps = 7/304 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G++ D YT ++ C++ +L A +L + + G P +T++TL++G+C +G
Sbjct: 96 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + D MV+ P T + LI+ L ++ ++ EA ++ M E G PD +TY
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++N C+ GN+ A L +M + I+ +++ Y+ +I L K +A LF KG
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ D+V +++LI G C +G + +L+EM + PD VT++ L+ ++GK+ EA+
Sbjct: 276 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAK 335
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L ++M RGI PD I TYN+LI G CK A ++ MVSKG PD TY
Sbjct: 336 ELYNEMITRGIAPDTI-------TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTY 388
Query: 301 FSLI 304
LI
Sbjct: 389 SILI 392
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 130/254 (51%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +RG+ PD+ TY S + G CKE L EA++M + M G P VTY+ LI+ YC
Sbjct: 341 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ E+ +G++P TYN L+ K+ A ++ +EM +G+ P +TY I
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C G KA + ++M + + Y +I + +++ +A LF + KG
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+V +N +I G C G++ A L ++M PD+ TYN L+ + +
Sbjct: 521 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSV 580
Query: 241 RLLDQMKRRGIKPD 254
L+++MK G D
Sbjct: 581 ELIEEMKVCGFSAD 594
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 148/303 (48%), Gaps = 11/303 (3%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
P + S + + + + + M+ NG+ T +I+ YC K L AFS
Sbjct: 68 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 127
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
K G P T++ L++ +E ++ EA ++ M E PD +T + LING C
Sbjct: 128 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCL 187
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
G +A L D M+ G QP +TY ++ L K A LF + + +V
Sbjct: 188 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
++ +ID C +G+ + A SL EM+ + D VTY++L+ G C GK ++ ++L +M
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIE 305
R I PD + T++ALI K EG L A+EL EM+++GI PD TY SLI+
Sbjct: 308 GRNIIPDVV-------TFSALIDVFVK--EGKLLEAKELYNEMITRGIAPDTITYNSLID 358
Query: 306 GIA 308
G
Sbjct: 359 GFC 361
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 149/292 (51%), Gaps = 7/292 (2%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
++ +A + E M ++ +PT + +N L ++ F M GI T
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
++I+ ++K++ A +L + G PD+IT++ L+NG+C G +A +L D M+
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
+P ++T ++LI L + R+ EA L + + G PD V + +++ C +GN A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
L ++M+ + V Y+ ++ C+ G ++A L ++M+ +GIK D + T
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV-------T 282
Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
Y++LI GLC + + D ++LREM+ + I PD T+ +LI+ K E+
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+ S+G+ P++ TY + V G C+ G+L A + ++M G+ P+ VTY L+DG C+ G
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 470
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A ++M K + YN++IH + K+ +A + + +KG+ PD +TYN+
Sbjct: 471 LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 530
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I G C+ G+ +A L +M G P TY LI + +I + +L E G
Sbjct: 531 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 590
Query: 181 MLPDIVMFNALID 193
D +ID
Sbjct: 591 FSADSSTIKMVID 603
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 28/247 (11%)
Query: 91 LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
+++ K+ +A D+ + M + +P I +N L + R M GI+ M
Sbjct: 46 IVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDM 105
Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
T T +I ++ +++ A + G PD + F+ L++G C G + A +L+
Sbjct: 106 YTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDR 165
Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP---------- 260
M MK PD VT +TL++G C +G+V EA L+D+M G +PD +++ P
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 261 ------------------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
+ + Y+ +I LCK+ D A L EM KGI D TY S
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 285
Query: 303 LIEGIAS 309
LI G+ +
Sbjct: 286 LIGGLCN 292
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 82/163 (50%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M SRGV P TYG + G+C G L +A + E+M+++ + YN +I G CN
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A+S + +G+ P TYN++I L + + EAD + ++M E G PD TYNI
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 565
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163
LI + + L +EM G T +I +LS +
Sbjct: 566 LIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDR 608
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+ +GV+PD TY + G+CK+G L EA + +MKE+G P TYN LI +
Sbjct: 516 LSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 575
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96
L + +EM G +ST ++I ++L +R++
Sbjct: 576 LISSVELIEEMKVCGFSADSSTIKMVI-DMLSDRRL 610
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 30/346 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+SR V PD + S +S + G L++A +KE GL+P V Y LI GYC KG
Sbjct: 366 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ +A + R+EM++QG TYN ++H L + + EAD + EM E+ + PDS T I
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G+C+ GN + A L +M K I+ ++TY +L+ K + A +++ + ++K
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+LP + ++ L++ C+ G++ AF + EM + P + N+++ G CR G +
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605
Query: 241 RLLDQMKRRGIKPDHISFN------------------------------PTRLTYNALIQ 270
L++M G PD IS+N P TYN+++
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILH 665
Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
G C+ + AE +LR+M+ +G+ PD +TY +I G S D E+
Sbjct: 666 GFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 173/371 (46%), Gaps = 63/371 (16%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
++ +GV PD TY + +S +G +EEA ++ M G P TYNT+I+G C G
Sbjct: 261 VQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK 320
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM-------------- 106
E A EM++ G+ P ++TY L+ E + +VE + + +M
Sbjct: 321 YERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSS 380
Query: 107 ---------------------GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
E G++PD++ Y ILI GYCR G A +L +EM+ +G
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
++TY +++ L K+ + EAD+LF + + PD LIDGHC GN++ A
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAM 500
Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
L ++M ++ D VTYNTL+ G + G ++ A+ + M + I P IS++
Sbjct: 501 ELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560
Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
PT + N++I+G C++ E L +M+S+G PD
Sbjct: 561 CSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDC 620
Query: 298 NTYFSLIEGIA 308
+Y +LI G
Sbjct: 621 ISYNTLIYGFV 631
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 158/299 (52%), Gaps = 9/299 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G D TY + + G+CK L EA ++ +M E L P + T LIDG+C GN
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGN 495
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A +M ++ I TYN L+ + A ++ +M K I+P I+Y+I
Sbjct: 496 LQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSI 555
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+N C G+ +AF + DEMI K I+PT++ S+I + + + E +++G
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK--VHPDEVTYNTLMHGRCRQGKVEE 238
+PD + +N LI G N+ +AF L+K+M+ + + PD TYN+++HG CRQ +++E
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKE 675
Query: 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
A +L +M RG+ PD R TY +I G A + EM+ +G +PDD
Sbjct: 676 AEVVLRKMIERGVNPD-------RSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 170/340 (50%), Gaps = 28/340 (8%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
GV + YT V+ +CK+G++E+ L Q++E G+ P VTYNTLI Y +KG +E A
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
F + M +G P TYN +I+ L K A ++ EM G+ PDS TY L+
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ G+ + + +M + + P ++ ++S++ + ++ + +A F + G++PD
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 409
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
V++ LI G+C G I A +L EM + D VTYNT++HG C++ + EA +L +
Sbjct: 410 NVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 469
Query: 245 QMKRRGIKPDHISF--------------NPTRL--------------TYNALIQGLCKNQ 276
+M R + PD + N L TYN L+ G K
Sbjct: 470 EMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVG 529
Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
+ D A+E+ +MVSK I P +Y L+ + S AE+
Sbjct: 530 DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA 569
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 158/306 (51%), Gaps = 7/306 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
++S+G + + + + G +E A + +++ +G+ T N +++ C G
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E +F ++ ++G+ P TYN LI + M EA +++ M KG P TYN
Sbjct: 251 MEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNT 310
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+ING C+ G ++A + EM+ G+ P TY SL+ K+ ++E +++F + ++
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++PD+V F++++ +GN+++A + + PD V Y L+ G CR+G + A
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM 430
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L ++M ++G D + TYN ++ GLCK + A++L EM + + PD T
Sbjct: 431 NLRNEMLQQGCAMDVV-------TYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTL 483
Query: 301 FSLIEG 306
LI+G
Sbjct: 484 TILIDG 489
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 143/344 (41%), Gaps = 45/344 (13%)
Query: 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69
S + + + + + GRL +A L +M V N+L + N G+ + F
Sbjct: 113 SLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLI 172
Query: 70 EMVKQ-----------------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112
Q G + N LI L+ + A + +E+ G+
Sbjct: 173 RTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVG 232
Query: 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
+ T NI++N C+ G +K + ++ KG+ P ++TY +LI S + M EA +L
Sbjct: 233 INVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFEL 292
Query: 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
KG P + +N +I+G C +G ERA + EM R + PD TY +L+ C+
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFN----------------------------PTRLT 264
+G V E ++ M+ R + PD + F+ P +
Sbjct: 353 KGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVI 412
Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
Y LIQG C+ +A L EM+ +G D TY +++ G+
Sbjct: 413 YTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 172/317 (54%), Gaps = 8/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M ++G++P+ TY S + +C GR +ASR+L M E + P VT++ LID + +G
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A DEM+K+ I P TY+ LI+ M ++ EA M + M K P+ +TYN
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+C+ + L EM +G+ +TYT+LI + A +F+ ++ G
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG 461
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+LPDI+ ++ L+DG C NG +E A + + + R K+ PD TYN ++ G C+ GKVE+
Sbjct: 462 VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGW 521
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KP+ + TY ++ G C+ + A+ L REM +G PD TY
Sbjct: 522 DLFCSLSLKGVKPNVV-------TYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTY 574
Query: 301 FSLIEG-IASVDKAAES 316
+LI + DKAA +
Sbjct: 575 NTLIRAHLRDGDKAASA 591
Score = 194 bits (494), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 175/313 (55%), Gaps = 7/313 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G QPDS+T+ + + G+ + R EA ++++M G P VTY +++G C +G+
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+++A S +M + I P YN +I L + + +A ++ EM KGI P+ +TYN
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI C G A L +MI + I P ++T+++LI K+ +++EA++L++ + +
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI +++LI+G C + ++ A + + M P+ VTYNTL+ G C+ +V+E
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M +RG+ + + TY LI G + +E D A+ + ++MVS G+ PD TY
Sbjct: 417 ELFREMSQRGLVGNTV-------TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTY 469
Query: 301 FSLIEGIASVDKA 313
L++G+ + K
Sbjct: 470 SILLDGLCNNGKV 482
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 170/315 (53%), Gaps = 7/315 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G QPD TYG V+G+CK G ++ A +L++M++ + P V YNT+ID CN N
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKN 271
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + EM +GI P TYN LI L + +A +L +M E+ I P+ +T++
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A L+DEMI + I P + TY+SLI +R+ EA +FE ++K
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P++V +N LI G C ++ L +EM + + + VTY TL+HG + + + A+
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQ 451
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ QM G+ PD +TY+ L+ GLC N + + A + + + PD TY
Sbjct: 452 IVFKQMVSDGVLPDI-------MTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTY 504
Query: 301 FSLIEGIASVDKAAE 315
+IEG+ K +
Sbjct: 505 NIMIEGMCKAGKVED 519
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 171/335 (51%), Gaps = 28/335 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M++ G+ + YTY ++ C+ +L A +L +M + G P VT N+L++G+C+
Sbjct: 107 MQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNR 166
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A S +MV+ G P + T+N LIH L + EA ++ M KG PD +TY I
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGI 226
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++NG C+ G+ A SL +M I+P ++ Y ++I L + +A LF KG
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++V +N+LI C G A LL +M K++P+ VT++ L+ ++GK+ EA
Sbjct: 287 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 346
Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
+L D+M +R I PD +++ P +TYN LI+G
Sbjct: 347 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 406
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
CK + D EL REM +G+ + TY +LI G
Sbjct: 407 CKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 164/320 (51%), Gaps = 12/320 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+KSR P + +S + K + + + EQM+ G+ TY+ LI+ +C +
Sbjct: 73 VKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQ 131
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L +A + +M+K G P T N L++ ++ +A ++ +M E G PDS T+N
Sbjct: 132 LSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNT 191
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G R A +A +L D M+ KG QP ++TY ++ L K+ + A L +
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK 251
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P +V++N +ID C N+ A +L EMD + P+ VTYN+L+ C G+ +A
Sbjct: 252 IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 311
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
RLL M R I NP +T++ALI K EG L AE+L EM+ + I PD
Sbjct: 312 RLLSDMIERKI-------NPNVVTFSALIDAFVK--EGKLVEAEKLYDEMIKRSIDPDIF 362
Query: 299 TYFSLIEGIASVDKAAESSN 318
TY SLI G D+ E+ +
Sbjct: 363 TYSSLINGFCMHDRLDEAKH 382
Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 162/327 (49%), Gaps = 22/327 (6%)
Query: 5 GVQPDSYTYGSF----VSGMCKEGR-----------LEEASRMLEQMKENGLVPTAVTYN 49
G P S+++ SF SG+ + R L++A + M ++ P+ V ++
Sbjct: 26 GTAPPSFSHCSFWVRDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFS 85
Query: 50 TLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109
L+ ++ S ++M GI TY++LI+ ++ A +L +M +
Sbjct: 86 KLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKL 145
Query: 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169
G PD +T N L+NG+C A SL +M+ G QP T+ +LI L + NR EA
Sbjct: 146 GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA 205
Query: 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG 229
L + + KG PD+V + +++G C G+I+ A SLLK+M++ K+ P V YNT++
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265
Query: 230 RCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289
C V +A L +M +GI+P+ + TYN+LI+ LC A LL +M+
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVV-------TYNSLIRCLCNYGRWSDASRLLSDMI 318
Query: 290 SKGITPDDNTYFSLIEGIASVDKAAES 316
+ I P+ T+ +LI+ K E+
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEA 345
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 126/247 (51%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + PD +TY S ++G C RL+EA M E M P VTYNTLI G+C
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ EM ++G++ TY LIH R+ A + K+M G++PD +TY+I
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C G + A + + + ++P + TY +I + K ++ + LF + KG
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++V + ++ G C G E A +L +EM PD TYNTL+ R G +
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA 591
Query: 241 RLLDQMK 247
L+ +M+
Sbjct: 592 ELIREMR 598
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
++PD YTY + GMCK G++E+ + + G+ P VTY T++ G+C KG E A
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEAD 556
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
+ EM ++G +P + TYN LI L + + ++++EM V D+ T ++ N
Sbjct: 557 ALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTN 614
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
+GV+P+ TY + +SG C++G EEA + +MKE G +P + TYNTLI + G+
Sbjct: 530 KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAA 589
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHEL 90
+ EM + AST L+ + L
Sbjct: 590 SAELIREMRSCRFVGDASTIGLVTNML 616
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTY----NTLIDGYC 56
MK G PDS TY + + ++G ++ ++ +M+ V A T N L DG
Sbjct: 562 MKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHDGRL 621
Query: 57 NKGNLEM 63
+K L+M
Sbjct: 622 DKSFLKM 628
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 208 bits (529), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 179/330 (54%), Gaps = 28/330 (8%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G + Y + ++ CKEG + +A ++ +++ + L PT V++NTLI+GYC GNL+
Sbjct: 235 GFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEG 294
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
F + +M K P TY+ LI+ L E KM A + EM ++G++P+ + + LI+G
Sbjct: 295 FRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHG 354
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
+ R G + +M+ KG+QP ++ Y +L+ K ++ A + + + +G+ PD
Sbjct: 355 HSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPD 414
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+ + LIDG C G++E A + KEMD+ + D V ++ L+ G C++G+V +A R L
Sbjct: 415 KITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALR 474
Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
+M R GIKPD +++ P+ +TYN L+ GLCK
Sbjct: 475 EMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLG 534
Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEG 306
+ A+ LL M++ G+ PDD TY +L+EG
Sbjct: 535 QMKNADMLLDAMLNIGVVPDDITYNTLLEG 564
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 152/270 (56%), Gaps = 8/270 (2%)
Query: 2 KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
KSR +PD +TY + ++ +CKE +++ A + ++M + GL+P V + TLI G+ G +
Sbjct: 303 KSR-TRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEI 361
Query: 62 EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
++ +M+ +G+ P YN L++ +V A +++ M +G+ PD ITY L
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTL 421
Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
I+G+CR G+ + A + EM GI+ + +++L+ + K+ R+I+A++ L G+
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGI 481
Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
PD V + ++D C G+ + F LLKEM P VTYN L++G C+ G+++ A
Sbjct: 482 KPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADM 541
Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
LLD M G+ PD I TYN L++G
Sbjct: 542 LLDAMLNIGVVPDDI-------TYNTLLEG 564
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 146/274 (53%), Gaps = 7/274 (2%)
Query: 35 QMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94
++ + G +N L++ +C +GN+ A DE+ K+ + PT ++N LI+
Sbjct: 230 EILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVG 289
Query: 95 KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
+ E + +M + PD TY+ LIN C+ A L DEM +G+ P + +T
Sbjct: 290 NLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFT 349
Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
+LI S+ + + ++ L+KG+ PDIV++N L++G C NG++ A +++ M R
Sbjct: 350 TLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRR 409
Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
+ PD++TY TL+ G CR G VE A + +M + GI+ D + F +AL+ G+CK
Sbjct: 410 GLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGF-------SALVCGMCK 462
Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
AE LREM+ GI PDD TY +++
Sbjct: 463 EGRVIDAERALREMLRAGIKPDDVTYTMMMDAFC 496
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 119/205 (58%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S+G+QPD Y + V+G CK G L A +++ M GL P +TY TLIDG+C G+
Sbjct: 371 MLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGD 430
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A R EM + GI ++ L+ + E ++++A+ L+EM GI PD +TY +
Sbjct: 431 VETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTM 490
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+++ +C+ G+A+ F L EM G P+++TY L+ L K +M AD L + L G
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIG 550
Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
++PD + +N L++GH + N + +
Sbjct: 551 VVPDDITYNTLLEGHHRHANSSKRY 575
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 3/258 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG+ P+ + + + G + G ++ ++M GL P V YNTL++G+C G+
Sbjct: 336 MCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGD 395
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A + D M+++G+ P TY LI + A ++ KEM + GI D + ++
Sbjct: 396 LVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSA 455
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+ G C+ G A EM+ GI+P +TYT ++ K+ +L + + G
Sbjct: 456 LVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDG 515
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+P +V +N L++G C G ++ A LL M + V PD++TYNTL+ G R ++
Sbjct: 516 HVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHA--NSSK 573
Query: 241 RLLDQMKRRGIKPDHISF 258
R + Q GI D S+
Sbjct: 574 RYI-QKPEIGIVADLASY 590
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M ++G++PD +TY S +S +C GR +ASR+L M E + P VT++ LID + +G
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 343
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A DEM+K+ I P TY+ LI+ M ++ EA M + M K P+ +TY+
Sbjct: 344 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYST 403
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+C+ ++ L EM +G+ +TYT+LI + A +F+ ++ G
Sbjct: 404 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVG 463
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+I+ +N L+DG C NG + +A + + + R + PD TYN ++ G C+ GKVE+
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+ P+ I+ YN +I G C+ + A+ LL++M G P+ TY
Sbjct: 524 ELFCNLSLKGVSPNVIA-------YNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTY 576
Query: 301 FSLIEG 306
+LI
Sbjct: 577 NTLIRA 582
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 170/315 (53%), Gaps = 7/315 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG QPD TYG+ V+G+CK G ++ A +L++M++ + V YNT+IDG C +
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH 273
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + EM +GI P TY+ LI L + +A +L +M E+ I P+ +T++
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A L+DEMI + I P + TY+SLI +R+ EA +FE ++K
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 393
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P++V ++ LI G C +E L +EM + + + VTY TL+HG + + A+
Sbjct: 394 CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 453
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ QM G+ +P LTYN L+ GLCKN + A + + + PD TY
Sbjct: 454 MVFKQMVSVGV-------HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 506
Query: 301 FSLIEGIASVDKAAE 315
+IEG+ K +
Sbjct: 507 NIMIEGMCKAGKVED 521
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 177/316 (56%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +PD++T+ + + G+ + EA +++QM + G P VTY T+++G C +G+
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+++A S +M K I YN +I L + M +A ++ EM KGI PD TY+
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS 298
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ C G A L +MI + I P ++T+++LI K+ +++EA++L++ + +
Sbjct: 299 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 358
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI +++LI+G C + ++ A + + M P+ VTY+TL+ G C+ +VEE
Sbjct: 359 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGM 418
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M +RG+ + + TY LI G + ++ D A+ + ++MVS G+ P+ TY
Sbjct: 419 ELFREMSQRGLVGNTV-------TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 471
Query: 301 FSLIEGIASVDKAAES 316
L++G+ K A++
Sbjct: 472 NILLDGLCKNGKLAKA 487
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 169/315 (53%), Gaps = 7/315 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M++ G+ D YTY F++ C+ +L A +L +M + G P VT ++L++GYC+
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + D+MV+ G P T+ LIH L + K EA ++ +M ++G PD +TY
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT 228
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++NG C+ G+ A SL +M I+ ++ Y ++I L K M +A LF KG
Sbjct: 229 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKG 288
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+ +++LI C G A LL +M K++P+ VT++ L+ ++GK+ EA
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L D+M +R I PD TY++LI G C + D A+ + M+SK P+ TY
Sbjct: 349 KLYDEMIKRSIDPD-------IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 401
Query: 301 FSLIEGIASVDKAAE 315
+LI+G + E
Sbjct: 402 STLIKGFCKAKRVEE 416
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 133/254 (52%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + PD +TY S ++G C RL+EA M E M P VTY+TLI G+C
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E EM ++G++ TY LIH R A + K+M G+ P+ +TYNI
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C+ G KA + + + ++P + TY +I + K ++ + +LF N KG
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+++ +N +I G C G+ E A SLLK+M P+ TYNTL+ R R G E +
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593
Query: 241 RLLDQMKRRGIKPD 254
L+ +M+ G D
Sbjct: 594 ELIKEMRSCGFAGD 607
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 161/324 (49%), Gaps = 32/324 (9%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
++++A + M ++ P+ V +N L+ E+ S ++M GI TY+
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
+ I+ ++ A +L +M + G PD +T + L+NGYC A +L D+M+
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
G +P T+T+LI L N+ EA L + + +G PD+V + +++G C G+I+ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
SLLK+M++ K+ D V YNT++ G C+ +++A L +M +GI+PD ++
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGIT 294
NP +T++ALI K EG L AE+L EM+ + I
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK--EGKLVEAEKLYDEMIKRSID 360
Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
PD TY SLI G D+ E+ +
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKH 384
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
++PD YTY + GMCK G++E+ + + G+ P + YNT+I G+C KG+ E A
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEAD 558
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
S +M + G +P + TYN LI L + + +++KEM G D+ T ++ N
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 616
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
LS ++ +A LF + + P IV FN L+ E SL ++M + + D
Sbjct: 58 LSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHD 117
Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
TY+ ++ CR+ ++ A +L +M + G +PD + T ++L+ G C ++
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIV-------TLSSLLNGYCHSKRIS 170
Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
A L+ +MV G PD T+ +LI G+ +KA+E+
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
+GV P+ Y + +SG C++G EEA +L++MKE+G +P + TYNTLI G+ E
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHEL 90
+ EM G AST L+ + L
Sbjct: 592 SAELIKEMRSCGFAGDASTIGLVTNML 618
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTY----NTLIDGYC 56
MK G P+S TY + + ++G E ++ ++++M+ G A T N L DG
Sbjct: 564 MKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRL 623
Query: 57 NKGNLEM 63
+K L+M
Sbjct: 624 DKSFLDM 630
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 167/306 (54%), Gaps = 7/306 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++G++P+ TY S +S +C GR +ASR+L M E + P T++ LID + +G
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A DEMVK+ I P+ TY+ LI+ M ++ EA M + M K PD +TYN
Sbjct: 342 LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNT 401
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+C+ ++ + EM +G+ +TY LI L + A ++F+ ++ G
Sbjct: 402 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+I+ +N L+DG C NG +E+A + + + R K+ P TYN ++ G C+ GKVE+
Sbjct: 462 VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KPD ++ YN +I G C+ + A+ L +EM G P+ Y
Sbjct: 522 DLFCNLSLKGVKPDVVA-------YNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574
Query: 301 FSLIEG 306
+LI
Sbjct: 575 NTLIRA 580
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 177/304 (58%), Gaps = 7/304 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G QP++ T+ + + G+ + EA ++++M G P VTY +++G C +G+ ++A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
F+ ++M + + P YN +I L + M +A ++ KEM KGI P+ +TY+ LI+
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C G A L +MI + I P + T+++LI K+ +++EA++L++ + + + P
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
IV +++LI+G C + ++ A + + M PD VTYNTL+ G C+ +VEE +
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
+M +RG+ + + TYN LIQGL + + D+A+E+ +EMVS G+ P+ TY +L+
Sbjct: 421 EMSQRGLVGNTV-------TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473
Query: 305 EGIA 308
+G+
Sbjct: 474 DGLC 477
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 175/336 (52%), Gaps = 28/336 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M ++G QPD TYG V+G+CK G + A +L +M++ L P + YNT+IDG C +
Sbjct: 212 MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 271
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + EM +GI P TY+ LI L + +A +L +M E+ I PD T++
Sbjct: 272 MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A L+DEM+ + I P+++TY+SLI +R+ EA Q+FE ++K
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PD+V +N LI G C +E + +EM + + + VTYN L+ G + G + A+
Sbjct: 392 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 451
Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
+ +M G+ P+ +++N PT TYN +I+G+
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
CK + + +L + KG+ PD Y ++I G
Sbjct: 512 CKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547
Score = 192 bits (488), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 173/315 (54%), Gaps = 7/315 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M++ G+ + YTY ++ C+ +L A +L +M + G P VT ++L++GYC+
Sbjct: 107 MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + D+M G P T+N LIH L + K EA ++ M KG PD +TY +
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++NG C+ G+ AF+L ++M ++P +L Y ++I L K M +A LF+ KG
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 286
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++V +++LI C G A LL +M K++PD T++ L+ ++GK+ EA
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAE 346
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L D+M +R I +P+ +TY++LI G C + D A+++ MVSK PD TY
Sbjct: 347 KLYDEMVKRSI-------DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 399
Query: 301 FSLIEGIASVDKAAE 315
+LI+G + E
Sbjct: 400 NTLIKGFCKYKRVEE 414
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 132/254 (51%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + P TY S ++G C RL+EA +M E M P VTYNTLI G+C
Sbjct: 352 MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E EM ++G++ TYN+LI L A ++ KEM G+ P+ +TYN
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C+ G +KA + + + ++PT+ TY +I + K ++ + LF N KG
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+V +N +I G C G+ E A +L KEM P+ YNTL+ R R G E +
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 241 RLLDQMKRRGIKPD 254
L+ +M+ G D
Sbjct: 592 ELIKEMRSCGFAGD 605
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 156/294 (53%), Gaps = 7/294 (2%)
Query: 23 EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST 82
E +L++A + +M ++ P+ + ++ L+ ++ S ++M GI T
Sbjct: 59 ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYT 118
Query: 83 YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
Y++LI+ ++ A +L +M + G P+ +T + L+NGYC +A +L D+M
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178
Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202
G QP +T+ +LI L N+ EA L + +AKG PD+V + +++G C G+ +
Sbjct: 179 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238
Query: 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262
AF+LL +M++ K+ P + YNT++ G C+ +++A L +M+ +GI+P+ +
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV------ 292
Query: 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
TY++LI LC A LL +M+ + I PD T+ +LI+ K E+
Sbjct: 293 -TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 7/257 (2%)
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A + EMVK P+ ++ L+ + K + ++M GI + TY+I
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LIN +CR A ++ +M+ G +P ++T +SL+ R+ EA L + G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P+ V FN LI G + A +L+ M PD VTY +++G C++G + A
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
LL++M++ ++P L YN +I GLCK + D A L +EM +KGI P+ TY
Sbjct: 242 NLLNKMEQGKLEPG-------VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 301 FSLIEGIASVDKAAESS 317
SLI + + + +++S
Sbjct: 295 SSLISCLCNYGRWSDAS 311
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 7/218 (3%)
Query: 91 LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150
L E K+ +A + EM + P I ++ L++ + SL ++M + GI
Sbjct: 57 LSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNH 116
Query: 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210
TY+ LI +++++ A + + G P+IV ++L++G+C + I A +L+ +
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176
Query: 211 MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270
M P+ VT+NTL+HG K EA L+D+M +G +PD + TY ++
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLV-------TYGVVVN 229
Query: 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
GLCK + DLA LL +M + P Y ++I+G+
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 267
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
++P YTY + GMCK G++E+ + + G+ P V YNT+I G+C KG+ E A
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
+ EM + G +P + YN LI L + + +++KEM G D+ T ++ N
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 614
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
+GV+PD Y + +SG C++G EEA + ++MKE+G +P + YNTLI G+ E
Sbjct: 530 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREA 589
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHEL 90
+ EM G AST L+ + L
Sbjct: 590 SAELIKEMRSCGFAGDASTIGLVTNML 616
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 7/299 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++GV+P+ TY S +S +C R +ASR+L M E + P VT+N LID + +G
Sbjct: 286 MENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGK 345
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A DEM+K+ I P TY+ LI+ M ++ EA M + M K P+ +TYN
Sbjct: 346 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 405
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING+C+ + L EM +G+ +TYT+LI + A +F+ ++ G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+I+ +N L+DG C NG +E+A + + + R K+ P TYN ++ G C+ GKVE+
Sbjct: 466 VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 525
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
L + +G+KPD I YN +I G C+ + A+ L R+M G PD T
Sbjct: 526 DLFCSLSLKGVKPDVI-------IYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/336 (30%), Positives = 170/336 (50%), Gaps = 28/336 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG QP+ TYG V+G+CK G ++ A +L +M+ + V Y+T+ID C +
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRH 275
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + EM +G+ P TY+ LI L + +A +L +M E+ I P+ +T+N
Sbjct: 276 EDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNA 335
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A L+DEMI + I P + TY+SLI +R+ EA +FE ++K
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P++V +N LI+G C I+ L +EM + + + VTY TL+HG + + A+
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 455
Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
+ QM G+ P+ +++N PT TYN +I+G+
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
CK + + +L + KG+ PD Y ++I G
Sbjct: 516 CKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFC 551
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 172/342 (50%), Gaps = 42/342 (12%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G+ + YTY ++ C+ ++ A +L +M + G P+ VT ++L++GYC+
Sbjct: 111 MQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 170
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + D+MV+ G P T+ LIH L + K EA ++ M ++G P+ +TY +
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230
Query: 121 LINGYCRCGNAKKAFSLHD-----------------------------------EMIHKG 145
++NG C+ G+ AF+L + EM +KG
Sbjct: 231 VVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 290
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
++P ++TY+SLI L R +A +L + + + + P++V FNALID G + A
Sbjct: 291 VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAE 350
Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
L EM + + PD TY++L++G C +++EA+ + + M + P+ + TY
Sbjct: 351 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV-------TY 403
Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
N LI G CK + D EL REM +G+ + TY +LI G
Sbjct: 404 NTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 172/308 (55%), Gaps = 7/308 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +PD+ T+ + + G+ + EA ++++M + G P VTY +++G C +G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+++AF+ ++M I Y+ +I L R +A ++ EM KG+ P+ ITY+
Sbjct: 241 IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ C A L +MI + I P ++T+ +LI K+ +++EA++L++ + +
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI +++LI+G C + ++ A + + M P+ VTYNTL++G C+ +++E
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGV 420
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M +RG+ + + TY LI G + ++ D A+ + ++MVS G+ P+ TY
Sbjct: 421 ELFREMSQRGLVGNTV-------TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTY 473
Query: 301 FSLIEGIA 308
+L++G+
Sbjct: 474 NTLLDGLC 481
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 162/324 (50%), Gaps = 32/324 (9%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
+L++A + M ++ +P+ +N L+ ++ S ++M + GI TYN
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
+LI+ ++ A +L +M + G P +T + L+NGYC A +L D+M+
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
G +P +T+T+LI L N+ EA L + + +G P++V + +++G C G+I+ A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
F+LL +M+ K+ + V Y+T++ C+ ++A L +M+ +G++P+ I++
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304
Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGIT 294
NP +T+NALI K EG L AE+L EM+ + I
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVK--EGKLVEAEKLYDEMIKRSID 362
Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
PD TY SLI G D+ E+ +
Sbjct: 363 PDIFTYSSLINGFCMHDRLDEAKH 386
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 175/319 (54%), Gaps = 11/319 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S G+ PD T+ + + G +EG L+ A R+ EQM E G + V+ N ++ G+C +G
Sbjct: 215 MPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGR 274
Query: 61 LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
+E A +F EM Q G P T+N L++ L + A +++ M ++G PD TYN
Sbjct: 275 VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYN 334
Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
+I+G C+ G K+A + D+MI + P +TY +LI L K+N++ EA +L +K
Sbjct: 335 SVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 394
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
G+LPD+ FN+LI G C N A L +EM PDE TYN L+ C +GK++EA
Sbjct: 395 GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEA 454
Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
+L QM+ G I TYN LI G CK + AEE+ EM G++ + T
Sbjct: 455 LNMLKQMELSGCARSVI-------TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 507
Query: 300 YFSLIEGIAS---VDKAAE 315
Y +LI+G+ V+ AA+
Sbjct: 508 YNTLIDGLCKSRRVEDAAQ 526
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 165/313 (52%), Gaps = 7/313 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G PD YT+ + V+G+CK G ++ A +++ M + G P TYN++I G C G ++ A
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
D+M+ + P TYN LI L E ++ EA ++ + + KGI+PD T+N LI G
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C N + A L +EM KG +P TY LI L + ++ EA + + G
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
++ +N LIDG C A + EM+ V + VTYNTL+ G C+ +VE+A +L+D
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMD 529
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
QM G KPD + TYN+L+ C+ + A ++++ M S G PD TY +LI
Sbjct: 530 QMIMEGQKPD-------KYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582
Query: 305 EGIASVDKAAESS 317
G+ + +S
Sbjct: 583 SGLCKAGRVEVAS 595
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 168/318 (52%), Gaps = 7/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G PD YTY S +SG+CK G ++EA +L+QM P VTYNTLI C +
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A + +GI+P T+N LI L + R A ++ +EM KG PD TYN+
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNM 440
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ C G +A ++ +M G +++TY +LI K N+ EA+++F+ G
Sbjct: 441 LIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG 500
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ + V +N LIDG C + +E A L+ +M PD+ TYN+L+ CR G +++A
Sbjct: 501 VSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAA 560
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
++ M G +PD + TY LI GLCK ++A +LLR + KGI + Y
Sbjct: 561 DIVQAMTSNGCEPDIV-------TYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613
Query: 301 FSLIEGIASVDKAAESSN 318
+I+G+ K E+ N
Sbjct: 614 NPVIQGLFRKRKTTEAIN 631
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 167/304 (54%), Gaps = 7/304 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +R P++ TY + +S +CKE ++EEA+ + + G++P T+N+LI G C N
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+A +EM +G P TYN+LI L + K+ EA +MLK+M G ITYN
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G+C+ ++A + DEM G+ +TY +LI L K R+ +A QL + + +G
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PD +N+L+ C G+I++A +++ M PD VTY TL+ G C+ G+VE A
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+LL ++ +GI N T YN +IQGL + ++ A L REM+ + P D
Sbjct: 596 KLLRSIQMKGI-------NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVS 648
Query: 301 FSLI 304
+ ++
Sbjct: 649 YRIV 652
Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 160/315 (50%), Gaps = 8/315 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G++PD++ Y ++ + L+ +M G+ P T+N LI C L A
Sbjct: 149 GLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPA 208
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
++M G++P T+ ++ + E + A + ++M E G +++ N++++G
Sbjct: 209 ILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHG 268
Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
+C+ G + A + EM ++ G P T+ +L+ L K + A ++ + L +G P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
D+ +N++I G C G ++ A +L +M P+ VTYNTL+ C++ +VEEA L
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
+ +GI PD T+N+LIQGLC + +A EL EM SKG PD+ TY L
Sbjct: 389 RVLTSKGILPD-------VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNML 441
Query: 304 IEGIASVDKAAESSN 318
I+ + S K E+ N
Sbjct: 442 IDSLCSKGKLDEALN 456
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 143/316 (45%), Gaps = 42/316 (13%)
Query: 2 KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL 61
K P+ Y + + + G ++ ++LE MK + T+ LI+ Y
Sbjct: 75 KKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQ---- 130
Query: 62 EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121
F +DE++ S + +I E G+ PD+ YN +
Sbjct: 131 ---FELQDEIL--------SVVDWMIDEF-------------------GLKPDTHFYNRM 160
Query: 122 INGYCRCGNAKKAFSL-HDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+N GN+ K + H +M GI+P + T+ LI L + +++ A + E+ + G
Sbjct: 161 LNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYG 219
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++PD F ++ G+ G+++ A + ++M V+ N ++HG C++G+VE+A
Sbjct: 220 LVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDAL 279
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ +M + F P + T+N L+ GLCK A E++ M+ +G PD TY
Sbjct: 280 NFIQEMSNQD------GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTY 333
Query: 301 FSLIEGIASVDKAAES 316
S+I G+ + + E+
Sbjct: 334 NSVISGLCKLGEVKEA 349
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 2/199 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ GV +S TY + + G+CK R+E+A+++++QM G P TYN+L+ +C G+
Sbjct: 496 MEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD 555
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A M G P TY LI L ++ A +L+ + KGI YN
Sbjct: 556 IKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNP 615
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF--VLSKQNRMIEADQLFENFLA 178
+I G R +A +L EM+ + P ++F + + + EA L
Sbjct: 616 VIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE 675
Query: 179 KGMLPDIVMFNALIDGHCT 197
KG +P+ L +G T
Sbjct: 676 KGFVPEFSSLYMLAEGLLT 694
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+S GV+PD TY + +CK GR EA ++ + M + GL P TY TL+ GY KG
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L D MV+ GI P +++LI + K+ +A + +M ++G+ P+++TY
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I C+ G + A ++MI +G+ P + Y SLI L N+ A++L L +G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ + + FN++ID HC G + + L + M R+ V P+ +TYNTL++G C GK++EA
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAM 531
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+LL M G+KP+ + TY+ LI G CK + A L +EM S G++PD TY
Sbjct: 532 KLLSGMVSVGLKPNTV-------TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584
Query: 301 FSLIEGIASVDKAAES 316
+++G+ + A +
Sbjct: 585 NIILQGLFQTRRTAAA 600
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 179/315 (56%), Gaps = 10/315 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCN 57
M G P+ ++Y + G+C E R +EA +L M ++ G P V+Y T+I+G+
Sbjct: 149 MTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFK 208
Query: 58 KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
+G+ + A+S EM+ +GI+P TYN +I L + M +A ++L M + G++PD +T
Sbjct: 209 EGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 268
Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
YN +++GYC G K+A +M G++P ++TY+ L+ L K R +EA ++F++
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328
Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
+G+ P+I + L+ G+ T G + LL M R +HPD ++ L+ +QGKV+
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVD 388
Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
+A + +M+++G+ NP +TY A+I LCK+ + A +M+ +G++P +
Sbjct: 389 QAMLVFSKMRQQGL-------NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 441
Query: 298 NTYFSLIEGIASVDK 312
Y SLI G+ + +K
Sbjct: 442 IVYNSLIHGLCTCNK 456
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 169/316 (53%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M GV PD TY S + G C G+ +EA L++M+ +G+ P VTY+ L+D C G
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A D M K+G+ P +TY L+ + +VE +L M GI PD ++I
Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSI 376
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI Y + G +A + +M +G+ P +TY ++I +L K R+ +A FE + +G
Sbjct: 377 LICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG 436
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P +++N+LI G CT ERA L+ EM + + + +N+++ C++G+V E+
Sbjct: 437 LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESE 496
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L + M R G+KP+ I TYN LI G C + D A +LL MVS G+ P+ TY
Sbjct: 497 KLFELMVRIGVKPNVI-------TYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549
Query: 301 FSLIEGIASVDKAAES 316
+LI G + + ++
Sbjct: 550 STLINGYCKISRMEDA 565
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 167/312 (53%), Gaps = 7/312 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G PD +Y + ++G KEG ++A +M + G++P VTYN++I C ++ A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
+ MVK G+MP TYN ++H + EA LK+M G+ PD +TY++L++
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ G +A + D M +G++P + TY +L+ + + ++E L + + G+ PD
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+F+ LI + G +++A + +M + ++P+ VTY ++ C+ G+VE+A +
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
QM G+ P +I YN+LI GLC + + AEEL+ EM+ +GI + + S+I
Sbjct: 431 QMIDEGLSPGNI-------VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483
Query: 305 EGIASVDKAAES 316
+ + ES
Sbjct: 484 DSHCKEGRVIES 495
Score = 171 bits (432), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 166/318 (52%), Gaps = 17/318 (5%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC--NKGNLEM 63
V PD TYG + C+ GRL+ L + + G A+ + L+ G C + + M
Sbjct: 83 VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---GIVPDSITYNI 120
R M + G +P +YN+L+ L E + EA ++L M + G PD ++Y
Sbjct: 143 DIVLR-RMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+ING+ + G++ KA+S + EM+ +GI P ++TY S+I L K M +A ++ + G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++PD + +N+++ G+C++G + A LK+M V PD VTY+ LM C+ G+ EAR
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
++ D M +RG+KP+ TY L+QG +G L E LL MV GI PD
Sbjct: 322 KIFDSMTKRGLKPEIT-------TYGTLLQGYA--TKGALVEMHGLLDLMVRNGIHPDHY 372
Query: 299 TYFSLIEGIASVDKAAES 316
+ LI A K ++
Sbjct: 373 VFSILICAYAKQGKVDQA 390
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 171/318 (53%), Gaps = 7/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G+ PD Y + + K+G++++A + +M++ GL P AVTY +I C G
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A + ++M+ +G+ P YN LIH L K A++++ EM ++GI ++I +N
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I+ +C+ G ++ L + M+ G++P ++TY +LI +M EA +L ++ G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+ V ++ LI+G+C +E A L KEM+ V PD +TYN ++ G + + A+
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L ++ G + I + TYN ++ GLCKN+ D A ++ + + + + T+
Sbjct: 602 ELYVRITESGTQ---IELS----TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654
Query: 301 FSLIEGIASVDKAAESSN 318
+I+ + V + E+ +
Sbjct: 655 NIMIDALLKVGRNDEAKD 672
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 158/355 (44%), Gaps = 53/355 (14%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G+ P++ TYG+ + +CK GR+E+A EQM + GL P + YN+LI G C
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456
Query: 61 LEMAFSFRDEM-----------------------------------VKQGIMPTASTYNL 85
E A EM V+ G+ P TYN
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516
Query: 86 LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
LI+ + KM EA +L M G+ P+++TY+ LINGYC+ + A L EM G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
+ P ++TY ++ L + R A +L+ G ++ +N ++ G C N + A
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
+ + + M + + T+N ++ + G+ +EA+ L G+ P++ ++ +
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR--LMAE 694
Query: 266 NALIQGL---------------CKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
N + QGL C G L ++RE++ +G TY S+I+
Sbjct: 695 NIIGQGLLEELDQLFLSMEDNGCTVDSGML-NFIVRELLQRGEITRAGTYLSMID 748
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 115/245 (46%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
GV+P+ TY + ++G C G+++EA ++L M GL P VTY+TLI+GYC +E A
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
EM G+ P TYN+++ L R+ A ++ + E G + TYNI+++G
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ A + + ++ T+ +I L K R EA LF F + G++P+
Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+ + + G +E L M+ D N ++ ++G++ A L
Sbjct: 686 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLS 745
Query: 245 QMKRR 249
+ +
Sbjct: 746 MIDEK 750
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
G + PD TY ILI CR G F+ +I KG + + +T L+ L R
Sbjct: 79 GADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRT 138
Query: 167 IEA-DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM--DR-MKVHPDEVT 222
+A D + G +P++ +N L+ G C + A LL M DR PD V+
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198
Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
Y T+++G ++G ++A +M RGI PD + TYN++I LCK Q D A
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV-------TYNSIIAALCKAQAMDKAM 251
Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
E+L MV G+ PD TY S++ G S + E+
Sbjct: 252 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%)
Query: 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFR 68
++ T+ + + K GR +EA + NGLVP TY + + +G LE
Sbjct: 650 EARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 709
Query: 69 DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
M G + N ++ ELL ++ A L + EK ++ T ++ I+
Sbjct: 710 LSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 3 SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLE 62
S G+ P+ +TY + +G LEE ++ M++NG + N ++ +G +
Sbjct: 679 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEIT 738
Query: 63 MAFSFRDEMVKQGIMPTASTYNLLIHEL 90
A ++ + ++ AST +L I L
Sbjct: 739 RAGTYLSMIDEKHFSLEASTASLFIDLL 766
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 201 bits (510), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 171/317 (53%), Gaps = 8/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++G++P+ TY S +S +C GR +AS++L M E + P VT+N LID + +G
Sbjct: 211 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 270
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A D+M+K+ I P TYN LI+ M ++ +A M + M K PD TYN
Sbjct: 271 FVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 330
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+C+ + L EM H+G+ +TYT+LI L A ++F+ ++ G
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI+ ++ L+DG C NG +E+A + M + ++ D Y T++ G C+ GKV++
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KP+ + TYN +I GLC + A LL++M G PD TY
Sbjct: 451 DLFCSLSLKGVKPNVV-------TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTY 503
Query: 301 FSLIEG-IASVDKAAES 316
+LI + DKAA +
Sbjct: 504 NTLIRAHLRDGDKAASA 520
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 179/318 (56%), Gaps = 10/318 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +PD+ T+ + + G+ + EA ++++M + G P VTY +++G C +G+
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 165
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+++AF+ ++M I +N +I L R + +A ++ KEM KGI P+ +TY+
Sbjct: 166 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 225
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ C G A L +MI K I P ++T+ +LI K+ + +EA++L ++ + +
Sbjct: 226 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI +N+LI+G C + +++A + + M PD TYNTL+ G C+ +VE+
Sbjct: 286 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGT 345
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M RG+ D + TY LIQGL + + D A+++ ++MVS G+ PD TY
Sbjct: 346 ELFREMSHRGLVGDTV-------TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 398
Query: 301 FSLIEGIAS---VDKAAE 315
L++G+ + ++KA E
Sbjct: 399 SILLDGLCNNGKLEKALE 416
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 164/313 (52%), Gaps = 7/313 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG QP+ TYG V+G+CK G ++ A +L +M+ + V +NT+ID C +
Sbjct: 141 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 200
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + EM +GI P TY+ LI L + +A +L +M EK I P+ +T+N
Sbjct: 201 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 260
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A LHD+MI + I P + TY SLI +R+ +A Q+FE ++K
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKD 320
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PD+ +N LI G C + +E L +EM + D VTY TL+ G G + A+
Sbjct: 321 CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 380
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
++ QM G+ PD +TY+ L+ GLC N + + A E+ M I D Y
Sbjct: 381 KVFKQMVSDGVPPD-------IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 433
Query: 301 FSLIEGIASVDKA 313
++IEG+ K
Sbjct: 434 TTMIEGMCKAGKV 446
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 174/317 (54%), Gaps = 7/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G+ + YTY ++ C+ ++ A +L +M + G P+ VT ++L++GYC+
Sbjct: 36 MQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 95
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + D+MV+ G P T+ LIH L + K EA ++ M ++G P+ +TY +
Sbjct: 96 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 155
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++NG C+ G+ AF+L ++M I+ ++ + ++I L K + +A LF+ KG
Sbjct: 156 VVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 215
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++V +++LI C+ G A LL +M K++P+ VT+N L+ ++GK EA
Sbjct: 216 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 275
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L D M +R I PD TYN+LI G C + D A+++ MVSK PD +TY
Sbjct: 276 KLHDDMIKRSIDPD-------IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTY 328
Query: 301 FSLIEGIASVDKAAESS 317
+LI+G + + +
Sbjct: 329 NTLIKGFCKSKRVEDGT 345
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 128/247 (51%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + PD +TY S ++G C RL++A +M E M P TYNTLI G+C
Sbjct: 281 MIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKR 340
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E EM +G++ TY LI L + A + K+M G+ PD +TY+I
Sbjct: 341 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 400
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C G +KA + D M I+ + YT++I + K ++ + LF + KG
Sbjct: 401 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++V +N +I G C+ ++ A++LLK+M PD TYNTL+ R G +
Sbjct: 461 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASA 520
Query: 241 RLLDQMK 247
L+ +M+
Sbjct: 521 ELIREMR 527
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 71/309 (22%)
Query: 71 MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----GIVPDSITYNILI---- 122
MVK +P+ +N L+ + +K D++ +GEK GI + TYNILI
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKF----DLVISLGEKMQRLGISHNLYTYNILINCFC 56
Query: 123 -------------------------------NGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
NGYC A +L D+M+ G +P +
Sbjct: 57 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 116
Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211
T+T+LI L N+ EA L + + +G P++V + +++G C G+I+ AF+LL +M
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176
Query: 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------------- 258
+ K+ D V +NT++ C+ V++A L +M+ +GI+P+ +++
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236
Query: 259 ---------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
NP +T+NALI K + AE+L +M+ + I PD TY SL
Sbjct: 237 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296
Query: 304 IEGIASVDK 312
I G D+
Sbjct: 297 INGFCMHDR 305
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171
+P +N L++ + SL ++M GI + TY LI +++++ A
Sbjct: 7 LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66
Query: 172 LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231
L + G P IV ++L++G+C I A +L+ +M M PD +T+ TL+HG
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126
Query: 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
K EA L+D+M +RG +P+ + TY ++ GLCK + DLA LL +M +
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLV-------TYGVVVNGLCKRGDIDLAFNLLNKMEAA 179
Query: 292 GITPDDNTYFSLIEGIASVDKAAESSN 318
I D + ++I+ + ++ N
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALN 206
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 67/123 (54%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ ++ D Y Y + + GMCK G++++ + + G+ P VTYNT+I G C+K
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 480
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A++ +M + G +P + TYN LI L + + ++++EM V D+ T +
Sbjct: 481 LQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 540
Query: 121 LIN 123
+ N
Sbjct: 541 VAN 543
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
+GV+P+ TY + +SG+C + L+EA +L++MKE+G +P + TYNTLI + G+
Sbjct: 459 KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 518
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHEL 90
+ EM + AST L+ + L
Sbjct: 519 SAELIREMRSCRFVGDASTIGLVANML 545
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 201 bits (510), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 180/314 (57%), Gaps = 10/314 (3%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G +PD+ T+ + + G+ EG++ EA ++++M ENG P VTYN++++G C G+ +A
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
+M ++ + TY+ +I L + + A + KEM KGI +TYN L+ G
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ G L +M+ + I P ++T+ L+ V K+ ++ EA++L++ + +G+ P+
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
I+ +N L+DG+C + A ++L M R K PD VT+ +L+ G C +V++ ++
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFR 392
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
+ +RG+ + + TY+ L+QG C++ + LAEEL +EMVS G+ PD TY L+
Sbjct: 393 NISKRGLVANAV-------TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445
Query: 305 EGIA---SVDKAAE 315
+G+ ++KA E
Sbjct: 446 DGLCDNGKLEKALE 459
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 166/306 (54%), Gaps = 7/306 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++G++ TY S V G+CK G+ + + +L+ M +VP +T+N L+D + +G
Sbjct: 254 METKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A EM+ +GI P TYN L+ M+ ++ EA++ML M PD +T+
Sbjct: 314 LQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTS 373
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI GYC + + +G+ +TY+ L+ + ++ A++LF+ ++ G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+LPD++ + L+DG C NG +E+A + +++ + K+ V Y T++ G C+ GKVE+A
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAW 493
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KP+ +TY +I GLCK A LLR+M G P+D TY
Sbjct: 494 NLFCSLPCKGVKPNV-------MTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 301 FSLIEG 306
+LI
Sbjct: 547 NTLIRA 552
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 168/318 (52%), Gaps = 7/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G QPD TY S V+G+C+ G A +L +M+E + TY+T+ID C G
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A S EM +GI + TYN L+ L K + +LK+M + IVP+ IT+N+
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++ + + G ++A L+ EMI +GI P ++TY +L+ QNR+ EA+ + + +
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PDIV F +LI G+C ++ + + + + + + VTY+ L+ G C+ GK++ A
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M G+ PD +TY L+ GLC N + + A E+ ++ + Y
Sbjct: 424 ELFQEMVSHGVLPDV-------MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476
Query: 301 FSLIEGIASVDKAAESSN 318
++IEG+ K ++ N
Sbjct: 477 TTIIEGMCKGGKVEDAWN 494
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 172/317 (54%), Gaps = 7/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ R V+ D +TY + + +C++G ++ A + ++M+ G+ + VTYN+L+ G C G
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+MV + I+P T+N+L+ + E K+ EA+++ KEM +GI P+ ITYN
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++GYC +A ++ D M+ P ++T+TSLI R+ + ++F N +G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++ + V ++ L+ G C +G I+ A L +EM V PD +TY L+ G C GK+E+A
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ + +++ + + Y +I+G+CK + + A L + KG+ P+ TY
Sbjct: 459 EIFEDLQKSKMDLGIV-------MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511
Query: 301 FSLIEGIASVDKAAESS 317
+I G+ +E++
Sbjct: 512 TVMISGLCKKGSLSEAN 528
Score = 154 bits (389), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 148/271 (54%), Gaps = 3/271 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +RG+ P+ TY + + G C + RL EA+ ML+ M N P VT+ +LI GYC
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKR 383
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ + K+G++ A TY++L+ K+ A+++ +EM G++PD +TY I
Sbjct: 384 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 443
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C G +KA + +++ + ++ YT++I + K ++ +A LF + KG
Sbjct: 444 LLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 503
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+++ + +I G C G++ A LL++M+ P++ TYNTL+ R G + +
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
+L+++MK G D S ++ + L+ G
Sbjct: 564 KLIEEMKSCGFSADASSI---KMVIDMLLSG 591
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 7/292 (2%)
Query: 27 EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
++A + ++M + +P+ V ++ + F ++ GI T N++
Sbjct: 70 DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129
Query: 87 IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
I+ K A +L ++ + G PD+ T+N LI G G +A L D M+ G
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189
Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
QP ++TY S++ + + A L + + D+ ++ +ID C +G I+ A S
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249
Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
L KEM+ + VTYN+L+ G C+ GK + LL M R I P+ I T+N
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI-------TFN 302
Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
L+ K + A EL +EM+++GI+P+ TY +L++G ++ +E++N
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 171/317 (53%), Gaps = 8/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M ++G++P+ TY S + +C GR +ASR+L M E + P VT++ LID + +G
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A DEM+K+ I P TY+ LI+ M ++ EA M + M K P+ +TYN
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+C+ ++ L EM +G+ +TY +LI L + A ++F+ ++ G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI+ ++ L+DG C G +E+A + + + + K+ PD TYN ++ G C+ GKVE+
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KP+ I Y +I G C+ + A+ L REM G P+ TY
Sbjct: 521 DLFCSLSLKGVKPNVI-------IYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 573
Query: 301 FSLIEG-IASVDKAAES 316
+LI + DKAA +
Sbjct: 574 NTLIRARLRDGDKAASA 590
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 172/315 (54%), Gaps = 7/315 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +RG QPD +TYG+ V+G+CK G ++ A +L++M++ + V Y T+ID CN N
Sbjct: 211 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKN 270
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + EM +GI P TYN LI L + +A +L +M E+ I P+ +T++
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A L+DEMI + I P + TY+SLI +R+ EA +FE ++K
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P++V +N LI G C +E L +EM + + + VTYNTL+ G + G + A+
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
++ +M G+ PD I TY+ L+ GLCK + + A + + + PD TY
Sbjct: 451 KIFKKMVSDGVPPDII-------TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503
Query: 301 FSLIEGIASVDKAAE 315
+IEG+ K +
Sbjct: 504 NIMIEGMCKAGKVED 518
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 172/306 (56%), Gaps = 7/306 (2%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
QP++ T+ + + G+ + EA ++++M G P TY T+++G C +G++++A S
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
+M K I Y +I L + + +A ++ EM KGI P+ +TYN LI C
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
G A L +MI + I P ++T+++LI K+ +++EA++L++ + + + PDI
Sbjct: 302 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 361
Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
+++LI+G C + ++ A + + M P+ VTYNTL+ G C+ +VEE L +M
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421
Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
+RG+ + + TYN LIQGL + + D+A+++ ++MVS G+ PD TY L++G
Sbjct: 422 SQRGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Query: 307 IASVDK 312
+ K
Sbjct: 475 LCKYGK 480
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 168/335 (50%), Gaps = 28/335 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M++ + D Y+Y ++ C+ +L A +L +M + G P VT ++L++GYC+
Sbjct: 106 MQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 165
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + D+M P T+N LIH L + K EA ++ M +G PD TY
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++NG C+ G+ A SL +M I+ ++ YT++I L + +A LF KG
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++V +N+LI C G A LL +M K++P+ VT++ L+ ++GK+ EA
Sbjct: 286 IRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 345
Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
+L D+M +R I PD +++ P +TYN LI+G
Sbjct: 346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
CK + + EL REM +G+ + TY +LI+G+
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 130/254 (51%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + PD +TY S ++G C RL+EA M E M P VTYNTLI G+C
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E EM ++G++ TYN LI L A + K+M G+ PD ITY+I
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C+ G +KA + + + ++P + TY +I + K ++ + LF + KG
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+++++ +I G C G E A +L +EM P+ TYNTL+ R R G +
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590
Query: 241 RLLDQMKRRGIKPD 254
L+ +M+ G D
Sbjct: 591 ELIKEMRSCGFVGD 604
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 11/313 (3%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
P + +S + K + + + E+M+ + +YN LI+ +C + L +A +
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
+M+K G P T + L++ +++ EA ++ +M P+++T+N LI+G
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
A +A +L D M+ +G QP + TY +++ L K+ + A L + + D+V+
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
+ +ID C N+ A +L EMD + P+ VTYN+L+ C G+ +A RLL M
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLIE 305
R I NP +T++ALI K EG L AE+L EM+ + I PD TY SLI
Sbjct: 318 ERKI-------NPNVVTFSALIDAFVK--EGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 368
Query: 306 GIASVDKAAESSN 318
G D+ E+ +
Sbjct: 369 GFCMHDRLDEAKH 381
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 1/205 (0%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG+ ++ TY + + G+ + G + A ++ ++M +G+ P +TY+ L+DG C G
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
LE A + + K + P TYN++I + K+ + D+ + KG+ P+ I Y
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTT 540
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I+G+CR G ++A +L EM G P TY +LI + + +L + + G
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600
Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
+ D + +I+ +G +E+++
Sbjct: 601 FVGDASTISMVIN-MLHDGRLEKSY 624
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 172/317 (54%), Gaps = 8/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++G++P+ TY S +S +C GR +AS++L M E + P VT+N LID + +G
Sbjct: 286 METKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK 345
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A D+M+K+ I P TYN L++ M ++ +A M + M K PD +TYN
Sbjct: 346 FVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNT 405
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+C+ + L EM H+G+ +TYT+LI L A ++F+ ++ G
Sbjct: 406 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI+ ++ L+DG C NG +E+A + M + ++ D Y T++ G C+ GKV++
Sbjct: 466 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KP+ + TYN +I GLC + A LL++M G P+ TY
Sbjct: 526 DLFCSLSLKGVKPNVV-------TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 578
Query: 301 FSLIEG-IASVDKAAES 316
+LI + DKAA +
Sbjct: 579 NTLIRAHLRDGDKAASA 595
Score = 194 bits (492), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 179/318 (56%), Gaps = 10/318 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +PD+ T+ + + G+ + EA ++++M + G P VTY +++G C +G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++A + ++M I +N +I L R + +A ++ KEM KGI P+ +TY+
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ C G A L +MI K I P ++T+ +LI K+ + +EA++L+++ + +
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI +N+L++G C + +++A + + M PD VTYNTL+ G C+ +VE+
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M RG+ D + TY LIQGL + + D A+++ ++MVS G+ PD TY
Sbjct: 421 ELFREMSHRGLVGDTV-------TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 473
Query: 301 FSLIEGIAS---VDKAAE 315
L++G+ + ++KA E
Sbjct: 474 SILLDGLCNNGKLEKALE 491
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 164/313 (52%), Gaps = 7/313 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG QP+ TYG V+G+CK G + A +L +M+ + V +NT+ID C +
Sbjct: 216 MVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 275
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + EM +GI P TY+ LI L + +A +L +M EK I P+ +T+N
Sbjct: 276 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 335
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A L+D+MI + I P + TY SL+ +R+ +A Q+FE ++K
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKD 395
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PD+V +N LI G C + +E L +EM + D VTY TL+ G G + A+
Sbjct: 396 CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQ 455
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
++ QM G+ PD +TY+ L+ GLC N + + A E+ M I D Y
Sbjct: 456 KVFKQMVSDGVPPD-------IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIY 508
Query: 301 FSLIEGIASVDKA 313
++IEG+ K
Sbjct: 509 TTMIEGMCKAGKV 521
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 171/325 (52%), Gaps = 28/325 (8%)
Query: 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
YTY ++ C+ ++ A +L +M + G P+ VT ++L++GYC+ + A + D+
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180
Query: 71 MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
MV+ G P T+ LIH L + K EA ++ M ++G P+ +TY +++NG C+ G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
A +L ++M I+ ++ + ++I L K + +A LF+ KG+ P++V +++
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
LI C+ G A LL +M K++P+ VT+N L+ ++GK EA +L D M +R
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
Query: 251 IKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLAE 282
I PD ++N P +TYN LI+G CK++ +
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420
Query: 283 ELLREMVSKGITPDDNTYFSLIEGI 307
EL REM +G+ D TY +LI+G+
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGL 445
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 169/345 (48%), Gaps = 29/345 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+KSR + P + +S + K + + + E+M+ +V TYN LI+ +C +
Sbjct: 77 VKSRPL-PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQ 135
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ +A + +M+K G P+ T + L++ +++ +A ++ +M E G PD+IT+
Sbjct: 136 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 195
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G A +A +L D M+ +G QP ++TY ++ L K+ A L A
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK 255
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ D+V+FN +ID C +++ A +L KEM+ + P+ VTY++L+ C G+ +A
Sbjct: 256 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 315
Query: 241 RLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGL 272
+LL M + I P+ ++FN P TYN+L+ G
Sbjct: 316 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGF 375
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
C + D A+++ MVSK PD TY +LI+G + + +
Sbjct: 376 CMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420
Score = 151 bits (381), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 129/247 (52%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + PD +TY S V+G C RL++A +M E M P VTYNTLI G+C
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E EM +G++ TY LI L + A + K+M G+ PD +TY+I
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 475
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C G +KA + D M I+ + YT++I + K ++ + LF + KG
Sbjct: 476 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 535
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++V +N +I G C+ ++ A++LLK+M P+ TYNTL+ R G +
Sbjct: 536 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASA 595
Query: 241 RLLDQMK 247
L+ +M+
Sbjct: 596 ELIREMR 602
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 157/316 (49%), Gaps = 28/316 (8%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
+L++A + M ++ +P+ V +N L+ ++ S ++M + I+ TYN
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
+LI+ ++ A +L +M + G P +T + L+NGYC A +L D+M+
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
G +P +T+T+LI L N+ EA L + + +G P++V + +++G C G+ + A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
+LL +M+ K+ D V +NT++ C+ V++A L +M+ +GI+P+ +++
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
NP +T+NALI K + AE+L +M+ + I PD
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364
Query: 297 DNTYFSLIEGIASVDK 312
TY SL+ G D+
Sbjct: 365 IFTYNSLVNGFCMHDR 380
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 135/341 (39%), Gaps = 101/341 (29%)
Query: 17 VSGMCKEGR-LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
+ GMC GR S ++ NGL + L+ A MVK
Sbjct: 36 LCGMCYWGRAFSSGSGDYREILRNGL---------------HDMKLDDAIGLFGGMVKSR 80
Query: 76 IMPTASTYNLLIHELLMERKMVEADDMLKEMGEK----GIVPDSITYNILINGYCRCGNA 131
+P+ +N L+ + +K D++ +GEK IV TYNILIN +CR
Sbjct: 81 PLPSIVEFNKLLSAIAKMKKF----DVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQI 136
Query: 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191
A +L +M+ G + P IV ++L
Sbjct: 137 SLALALLGKMMKLGYE-----------------------------------PSIVTLSSL 161
Query: 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
++G+C I A +L+ +M M PD +T+ TL+HG K EA L+D+M +RG
Sbjct: 162 LNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC 221
Query: 252 KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL-------------------------- 285
+P+ + TY ++ GLCK + DLA LL
Sbjct: 222 QPNLV-------TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYR 274
Query: 286 ---------REMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
+EM +KGI P+ TY SLI + S + +++S
Sbjct: 275 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 315
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 67/123 (54%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ ++ D Y Y + + GMCK G++++ + + G+ P VTYNT+I G C+K
Sbjct: 496 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 555
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A++ +M + G +P + TYN LI L + + ++++EM V D+ T +
Sbjct: 556 LQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL 615
Query: 121 LIN 123
+ N
Sbjct: 616 VAN 618
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
+GV+P+ TY + +SG+C + L+EA +L++MKE+G +P + TYNTLI + G+
Sbjct: 534 KGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAA 593
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHEL 90
+ EM + AST L+ + L
Sbjct: 594 SAELIREMRSCRFVGDASTIGLVANML 620
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 171/312 (54%), Gaps = 7/312 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G +PD T GS V+G C+ R+ +A ++++M E G P V YN +ID C + A
Sbjct: 150 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDA 209
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
F F E+ ++GI P TY L++ L + +A +L +M +K I P+ ITY+ L++
Sbjct: 210 FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
+ + G +A L +EM+ I P ++TY+SLI L +R+ EA+Q+F+ ++KG L D
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 329
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+V +N LI+G C +E L +EM + + + VTYNTL+ G + G V++A+
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 389
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
QM GI PD TYN L+ GLC N E + A + +M + + D TY ++I
Sbjct: 390 QMDFFGISPDI-------WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442
Query: 305 EGIASVDKAAES 316
G+ K E+
Sbjct: 443 RGMCKTGKVEEA 454
Score = 184 bits (467), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 167/315 (53%), Gaps = 20/315 (6%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
++ +G++P+ TY + V+G+C R +A+R+L M + + P +TY+ L+D + G
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A +EMV+ I P TY+ LI+ L + ++ EA+ M M KG + D ++YN
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNT 335
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING+C+ + L EM +G+ +TY +LI + + +A + F G
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFG 395
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI +N L+ G C NG +E+A + ++M + ++ D VTY T++ G C+ GKVEEA
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAW 455
Query: 241 RLLDQMKRRGIKPDHISFNP------------------TRLTYNALIQGLCKNQEGD--L 280
L + +G+KPD +++ T++ L++ C +GD L
Sbjct: 456 SLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITL 515
Query: 281 AEELLREMVSKGITP 295
+ EL+++M+S G P
Sbjct: 516 SAELIKKMLSCGYAP 530
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 167/308 (54%), Gaps = 7/308 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G++ D YT+ ++ C ++ A +L +M + G P VT +L++G+C +
Sbjct: 111 MEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNR 170
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A S D+MV+ G P YN +I L +++ +A D KE+ KGI P+ +TY
Sbjct: 171 VSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+NG C A L +MI K I P ++TY++L+ K +++EA +LFE +
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDIV +++LI+G C + I+ A + M D V+YNTL++G C+ +VE+
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L +M +RG+ + + TYN LIQG + + D A+E +M GI+PD TY
Sbjct: 351 KLFREMSQRGLVSNTV-------TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 403
Query: 301 FSLIEGIA 308
L+ G+
Sbjct: 404 NILLGGLC 411
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 166/318 (52%), Gaps = 11/318 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+KSR P + +S + K + + + ++M+ G+ T+N +I+ +C
Sbjct: 77 VKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQ 135
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ +A S +M+K G P T L++ ++ +A ++ +M E G PD + YN
Sbjct: 136 VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNA 195
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I+ C+ AF E+ KGI+P ++TYT+L+ L +R +A +L + + K
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+++ ++AL+D NG + A L +EM RM + PD VTY++L++G C +++EA
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
++ D M +G D +S YN LI G CK + + +L REM +G+ + TY
Sbjct: 316 QMFDLMVSKGCLADVVS-------YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTY 368
Query: 301 FSLIEGI---ASVDKAAE 315
+LI+G VDKA E
Sbjct: 369 NTLIQGFFQAGDVDKAQE 386
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 131/254 (51%), Gaps = 7/254 (2%)
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
A +MVK P+ +N L+ ++ +K + K+M GI D T+NI+IN
Sbjct: 69 AIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVIN 128
Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
+C C A S+ +M+ G +P +T SL+ ++NR+ +A L + + G P
Sbjct: 129 CFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKP 188
Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
DIV +NA+ID C + AF KE++R + P+ VTY L++G C + +A RLL
Sbjct: 189 DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLL 248
Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
M ++ I P+ I TY+AL+ KN + A+EL EMV I PD TY SL
Sbjct: 249 SDMIKKKITPNVI-------TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSL 301
Query: 304 IEGIASVDKAAESS 317
I G+ D+ E++
Sbjct: 302 INGLCLHDRIDEAN 315
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 42/185 (22%)
Query: 168 EADQLFENFLAKGMLPDIVMFNAL-----------------------------------I 192
+A LF + + P IV FN L I
Sbjct: 68 DAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVI 127
Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
+ C + A S+L +M ++ PD VT +L++G CR+ +V +A L+D+M G K
Sbjct: 128 NCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYK 187
Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
PD ++ YNA+I LCK + + A + +E+ KGI P+ TY +L+ G+ + +
Sbjct: 188 PDIVA-------YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240
Query: 313 AAESS 317
++++
Sbjct: 241 WSDAA 245
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 177/318 (55%), Gaps = 7/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G QP++ TYG ++ MCK G+ A +L +M+E + AV Y+ +IDG C G+
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ AF+ +EM +GI TYN+LI + + +L++M ++ I P+ +T+++
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G ++A LH EMIH+GI P +TYTSLI K+N + +A+Q+ + ++KG
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P+I FN LI+G+C I+ L ++M V D VTYNTL+ G C GK+ A+
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M R + P+ + TY L+ GLC N E + A E+ ++ + D Y
Sbjct: 459 ELFQEMVSRKVPPNIV-------TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511
Query: 301 FSLIEGIASVDKAAESSN 318
+I G+ + K ++ +
Sbjct: 512 NIIIHGMCNASKVDDAWD 529
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 170/308 (55%), Gaps = 7/308 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G +P++ T+ + ++G+C EGR+ EA ++++M E G P +T NTL++G C G A
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
D+MV+ G P A TY +++ + + A ++L++M E+ I D++ Y+I+I+G
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ G+ AF+L +EM KGI ++TY LI R + +L + + + + P+
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 332
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+V F+ LID G + A L KEM + PD +TY +L+ G C++ +++A +++D
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 392
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
M +G +P T+N LI G CK D EL R+M +G+ D TY +LI
Sbjct: 393 LMVSKGC-------DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 305 EGIASVDK 312
+G + K
Sbjct: 446 QGFCELGK 453
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 167/341 (48%), Gaps = 42/341 (12%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ R ++ D+ Y + G+CK G L+ A + +M+ G+ +TYN LI G+CN G
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-- 118
+ +M+K+ I P T+++LI + E K+ EA+++ KEM +GI PD+ITY
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373
Query: 119 ---------------------------------NILINGYCRCGNAKKAFSLHDEMIHKG 145
NILINGYC+ L +M +G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
+ +TY +LI + ++ A +LF+ +++ + P+IV + L+DG C NG E+A
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493
Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
+ +++++ K+ D YN ++HG C KV++A L + +G+KP TY
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG-------VKTY 546
Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
N +I GLCK AE L R+M G PD TY LI
Sbjct: 547 NIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA 587
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 163/311 (52%), Gaps = 10/311 (3%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
P + S + K + + + +QM+ G+ T + +I+ +C L +AFS
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
+++K G P T++ LI+ L +E ++ EA +++ M E G PD IT N L+NG C
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
G +A L D+M+ G QP +TY ++ V+ K + A +L + + D V
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
++ +IDG C +G+++ AF+L EM+ + + +TYN L+ G C G+ ++ +LL M
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
+R I NP +T++ LI K + AEEL +EM+ +GI PD TY SLI+G
Sbjct: 326 KRKI-------NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 308 AS---VDKAAE 315
+DKA +
Sbjct: 379 CKENHLDKANQ 389
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 161/312 (51%), Gaps = 7/312 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G+ + YT ++ C+ +L A + ++ + G P +T++TLI+G C +G
Sbjct: 114 MELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGR 173
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A D MV+ G P T N L++ L + K EA ++ +M E G P+++TY
Sbjct: 174 VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 233
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++N C+ G A L +M + I+ + Y+ +I L K + A LF KG
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ +I+ +N LI G C G + LL++M + K++P+ VT++ L+ ++GK+ EA
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M RGI PD I TY +LI G CK D A +++ MVSKG P+ T+
Sbjct: 354 ELHKEMIHRGIAPDTI-------TYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 406
Query: 301 FSLIEGIASVDK 312
LI G ++
Sbjct: 407 NILINGYCKANR 418
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 133/254 (52%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG+ PD+ TY S + G CKE L++A++M++ M G P T+N LI+GYC
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ +M +G++ TYN LI K+ A ++ +EM + + P+ +TY I
Sbjct: 419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C G ++KA + +++ ++ + Y +I + +++ +A LF + KG
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P + +N +I G C G + A L ++M+ PD TYN L+ G ++
Sbjct: 539 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSV 598
Query: 241 RLLDQMKRRGIKPD 254
+L++++KR G D
Sbjct: 599 KLIEELKRCGFSVD 612
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 112/222 (50%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S+G P+ T+ ++G CK R+++ + +M G+V VTYNTLI G+C G
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 453
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L +A EMV + + P TY +L+ L + +A ++ +++ + + D YNI
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I+G C A+ L + KG++P + TY +I L K+ + EA+ LF G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
PD +N LI H +G+ ++ L++E+ R D T
Sbjct: 574 HAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAST 615
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 46/250 (18%)
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
FRD M+ +PT ++ L + ++ + K+M KGI + T +I+IN +C
Sbjct: 76 FRD-MIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFC 134
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
RC AFS ++I G +P +T
Sbjct: 135 RCRKLCLAFSAMGKIIKLGYEPNTIT---------------------------------- 160
Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
F+ LI+G C G + A L+ M M PD +T NTL++G C GK EA L+D+M
Sbjct: 161 -FSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKM 219
Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
G +P+ +++ P ++ +CK+ + LA ELLR+M + I D Y +I+G
Sbjct: 220 VEYGCQPNAVTYGP-------VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 307 IA---SVDKA 313
+ S+D A
Sbjct: 273 LCKHGSLDNA 282
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 1/205 (0%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RGV D+ TY + + G C+ G+L A + ++M + P VTY L+DG C+ G
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
E A +++ K + YN++IH + K+ +A D+ + KG+ P TYNI
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I G C+ G +A L +M G P TY LI ++ +L E G
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608
Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
D +ID ++G ++++F
Sbjct: 609 FSVDASTIKMVID-MLSDGRLKKSF 632
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 173/313 (55%), Gaps = 8/313 (2%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
V P+ YTY V+G CK G +EEA++ + ++ E GL P TY +LI GYC + +L+ AF
Sbjct: 214 VCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAF 273
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
+EM +G Y LIH L + R++ EA D+ +M + P TY +LI
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
C +A +L EM GI+P + TYT LI L Q + +A +L L KG++P++
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
+ +NALI+G+C G IE A +++ M+ K+ P+ TYN L+ G C+ V +A +L++
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNK 452
Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
M R + PD + TYN+LI G C++ D A LL M +G+ PD TY S+I+
Sbjct: 453 MLERKVLPDVV-------TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505
Query: 306 GIASVDKAAESSN 318
+ + E+ +
Sbjct: 506 SLCKSKRVEEACD 518
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 172/317 (54%), Gaps = 8/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G + + Y + G+C R++EA + +MK++ PT TY LI C
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A + EM + GI P TY +LI L + K +A ++L +M EKG++P+ ITYN
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LINGYC+ G + A + + M + + P TY LI K N + +A + L +
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERK 457
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+LPD+V +N+LIDG C +GN + A+ LL M+ + PD+ TY +++ C+ +VEEA
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEAC 517
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L D ++++G+ NP + Y ALI G CK + D A +L +M+SK P+ T+
Sbjct: 518 DLFDSLEQKGV-------NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 301 FSLIEGIASVDKAAESS 317
+LI G+ + K E++
Sbjct: 571 NALIHGLCADGKLKEAT 587
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 163/307 (53%), Gaps = 8/307 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+SR + P++ TY + G CK + +A +L +M E ++P VTYN+LIDG C GN
Sbjct: 419 MESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A+ M +G++P TY +I L +++ EA D+ + +KG+ P+ + Y
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+GYC+ G +A + ++M+ K P LT+ +LI L ++ EA L E + G
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P + LI +G+ + A+S ++M PD TY T + CR+G++ +A
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
++ +M+ G+ PD TY++LI+G + + A ++L+ M G P +T+
Sbjct: 658 DMMAKMRENGVSPD-------LFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTF 710
Query: 301 FSLIEGI 307
SLI+ +
Sbjct: 711 LSLIKHL 717
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 158/328 (48%), Gaps = 25/328 (7%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R V PD TY S + G C+ G + A R+L M + GLVP TY ++ID C
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A D + ++G+ P Y LI K+ EA ML++M K +P+S+T+N
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G C G K+A L ++M+ G+QPT+ T T LI L K A F+ L+ G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PD + I +C G + A ++ +M V PD TY++L+ G G+ A
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG------------------DLAE 282
+L +M+ G + P++ T+ +LI+ L + + G D
Sbjct: 693 DVLKRMRDTGCE-------PSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVV 745
Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASV 310
ELL +MV +TP+ +Y LI GI V
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEV 773
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 168/361 (46%), Gaps = 61/361 (16%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG+ PD +TY S + +CK R+EEA + + +++ G+ P V Y LIDGYC G
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A ++M+ + +P + T+N LIH L + K+ EA + ++M + G+ P T I
Sbjct: 548 VDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + G+ A+S +M+ G +P TYT+ I ++ R+++A+ + G
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667
Query: 181 MLPDIVMFNALIDGHCTNGNIERAF-------------------SLLKEMDRMK------ 215
+ PD+ +++LI G+ G AF SL+K + MK
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727
Query: 216 ----------------------------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
V P+ +Y L+ G C G + A ++ D M+
Sbjct: 728 SEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787
Query: 248 R-RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
R GI +P+ L +NAL+ CK ++ + A +++ +M+ G P + LI G
Sbjct: 788 RNEGI-------SPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICG 840
Query: 307 I 307
+
Sbjct: 841 L 841
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 146/290 (50%), Gaps = 26/290 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S G +PD++TY +F+ C+EGRL +A M+ +M+ENG+ P TY++LI GY + G
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER---------------KMVEAD---DM 102
AF M G P+ T+ LI LL + M+E D ++
Sbjct: 688 TNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVEL 747
Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI-HKGIQPTMLTYTSLIFVLS 161
L++M E + P++ +Y LI G C GN + A + D M ++GI P+ L + +L+
Sbjct: 748 LEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCC 807
Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
K + EA ++ ++ + G LP + LI G G ER S+ + + + + DE+
Sbjct: 808 KLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDEL 867
Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271
+ ++ G +QG VE L + M++ G K F+ TY+ LI+G
Sbjct: 868 AWKIIIDGVGKQGLVEAFYELFNVMEKNGCK-----FSSQ--TYSLLIEG 910
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 161/388 (41%), Gaps = 82/388 (21%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
++ +GV P+ Y + + G CK G+++EA MLE+M +P ++T+N LI G C G
Sbjct: 523 LEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------------------------- 92
L+ A ++MVK G+ PT ST +LIH LL
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642
Query: 93 -------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
E ++++A+DM+ +M E G+ PD TY+ LI GY G AF + M G
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
Query: 146 IQPTMLTYTSLIFVL-----SKQ----------NRMIEAD---QLFENFLAKGMLPDIVM 187
+P+ T+ SLI L KQ + M+E D +L E + + P+
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKS 762
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
+ LI G C GN+ A + M R + + P E+ +N L+ C+ K EA +++D M
Sbjct: 763 YEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDM 822
Query: 247 KRRGIKPD----------------------------HISFNPTRLTYNALIQGLCKNQEG 278
G P + L + +I G+ K
Sbjct: 823 ICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLV 882
Query: 279 DLAEELLREMVSKGITPDDNTYFSLIEG 306
+ EL M G TY LIEG
Sbjct: 883 EAFYELFNVMEKNGCKFSSQTYSLLIEG 910
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 100/205 (48%), Gaps = 14/205 (6%)
Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
DS+ + + CR N + F L ++I + Y +L+ L++ + E Q++
Sbjct: 154 DSVGDALYVLDLCRKMNKDERFELKYKLI-------IGCYNTLLNSLARFGLVDEMKQVY 206
Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
L + P+I +N +++G+C GN+E A + ++ + PD TY +L+ G C++
Sbjct: 207 MEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQR 266
Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
++ A ++ ++M +G + + ++ Y LI GLC + D A +L +M
Sbjct: 267 KDLDSAFKVFNEMPLKGCRRNEVA-------YTHLIHGLCVARRIDEAMDLFVKMKDDEC 319
Query: 294 TPDDNTYFSLIEGIASVDKAAESSN 318
P TY LI+ + ++ +E+ N
Sbjct: 320 FPTVRTYTVLIKSLCGSERKSEALN 344
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 198 bits (503), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 173/333 (51%), Gaps = 30/333 (9%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G+ P Y+Y + G+CK G L +A ++ MK NG+ P AVTY L+ GYC+ G
Sbjct: 352 MTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGK 411
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A S EM++ +P A T N+L+H L ++ EA+++L++M EKG D++T NI
Sbjct: 412 VDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNI 471
Query: 121 LINGYCRCGNAKKAFSL-----------------------HDEMIHKGIQPTMLTYTSLI 157
+++G C G KA + D +I P ++TY++L+
Sbjct: 472 IVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLL 531
Query: 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217
L K R EA LF + + + PD V +N I C G I AF +LK+M++ H
Sbjct: 532 NGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCH 591
Query: 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277
TYN+L+ G + ++ E L+D+MK +GI P+ TYN IQ LC+ ++
Sbjct: 592 KSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNIC-------TYNTAIQYLCEGEK 644
Query: 278 GDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310
+ A LL EM+ K I P+ ++ LIE V
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKV 677
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 168/322 (52%), Gaps = 14/322 (4%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G +P+ +T+G V G CK G ++ +L M+ G++P V YNT++ +C +G
Sbjct: 173 MPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGR 232
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV----PDSI 116
+ + ++M ++G++P T+N I L E K+++A + +M + P+SI
Sbjct: 233 NDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSI 292
Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
TYN+++ G+C+ G + A +L + + ++ +Y + L + + IEA+ + +
Sbjct: 293 TYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQM 352
Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
KG+ P I +N L+DG C G + A +++ M R V PD VTY L+HG C GKV
Sbjct: 353 TDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKV 412
Query: 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
+ A+ LL +M R P+ T N L+ L K AEELLR+M KG D
Sbjct: 413 DAAKSLLQEMMRNNCLPN-------AYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLD 465
Query: 297 DNTYFSLIEGIAS---VDKAAE 315
T +++G+ +DKA E
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIE 487
Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 172/373 (46%), Gaps = 75/373 (20%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV----PTAVTYNTLIDGYC 56
M+ G+ PD T+ S +S +CKEG++ +ASR+ M+ + + P ++TYN ++ G+C
Sbjct: 243 MREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFC 302
Query: 57 NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI----- 111
G LE A + + + + + + +YN+ + L+ K +EA+ +LK+M +KGI
Sbjct: 303 KVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIY 362
Query: 112 ------------------------------VPDSITYNILINGYCRCGNAKKAFSLHDEM 141
PD++TY L++GYC G A SL EM
Sbjct: 363 SYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEM 422
Query: 142 IHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201
+ P T L+ L K R+ EA++L KG D V N ++DG C +G +
Sbjct: 423 MRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGEL 482
Query: 202 ERAFSLLKEMDRMKVH--------------------------PDEVTYNTLMHGRCRQGK 235
++A ++K M+VH PD +TY+TL++G C+ G+
Sbjct: 483 DKAIEIVK---GMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR 539
Query: 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
EA+ L +M ++PD ++ YN I CK + A +L++M KG
Sbjct: 540 FAEAKNLFAEMMGEKLQPDSVA-------YNIFIHHFCKQGKISSAFRVLKDMEKKGCHK 592
Query: 296 DDNTYFSLIEGIA 308
TY SLI G+
Sbjct: 593 SLETYNSLILGLG 605
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 13/316 (4%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
+P Y Y + KE R+E S + + M G+ P T+N LI C+ ++ A
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
DEM ++G P T+ +L+ + ++L M G++P+ + YN +++ +C
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFC 228
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML---- 182
R G + + ++M +G+ P ++T+ S I L K+ ++++A ++F + L
Sbjct: 229 REGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288
Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
P+ + +N ++ G C G +E A +L + + +YN + G R GK EA +
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETV 348
Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
L QM +GI P+ +YN L+ GLCK A+ ++ M G+ PD TY
Sbjct: 349 LKQMTDKGI-------GPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGC 401
Query: 303 LIEGIASVDK--AAES 316
L+ G SV K AA+S
Sbjct: 402 LLHGYCSVGKVDAAKS 417
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 165/410 (40%), Gaps = 99/410 (24%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------- 45
MK GV PD+ TYG + G C G+++ A +L++M N +P A
Sbjct: 387 MKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGR 446
Query: 46 --------------------VTYNTLIDGYCNKGNLEMAFSF------------------ 67
VT N ++DG C G L+ A
Sbjct: 447 ISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNS 506
Query: 68 -----RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122
D +++ +P TY+ L++ L + EA ++ EM + + PDS+ YNI I
Sbjct: 507 YIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFI 566
Query: 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML 182
+ +C+ G AF + +M KG ++ TY SLI L +N++ E L + KG+
Sbjct: 567 HHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGIS 626
Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR---------- 232
P+I +N I C +E A +LL EM + + P+ ++ L+ C+
Sbjct: 627 PNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEV 686
Query: 233 ------------------------QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
G++ +A LL+ + RG F Y L
Sbjct: 687 FETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRG-------FELGTFLYKDL 739
Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
++ LCK E ++A +L +M+ +G D +I+G+ + E+++
Sbjct: 740 VESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEANS 789
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 139/293 (47%), Gaps = 21/293 (7%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
PD TY + ++G+CK GR EA + +M L P +V YN I +C +G + AF
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
+M K+G + TYN LI L ++ ++ E ++ EM EKGI P+ TYN I C
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-----KGML 182
+ A +L DEM+ K I P + ++ LI K A ++FE ++ +G+
Sbjct: 642 GEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLY 701
Query: 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
+MFN L+ G + +A LL+ + Y L+ C++ ++E A +
Sbjct: 702 S--LMFNELL----AAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGI 755
Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCK---NQEGDLAEELLREMVSKG 292
L +M RG F+P L +I GL K +E + + + EM S G
Sbjct: 756 LHKMIDRG-----YGFDPAALM--PVIDGLGKMGNKKEANSFADKMMEMASVG 801
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
+P++ Y L+ K+ R+ L+++ + G+ P FN LI C + ++ A
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168
Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
L EM P+E T+ L+ G C+ G ++ LL+ M+ G+ P+ ++ YN
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPN-------KVIYN 221
Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
++ C+ D +E+++ +M +G+ PD T+ S I + K ++S
Sbjct: 222 TIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDAS 272
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 176/318 (55%), Gaps = 7/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G QP+ TYG ++ MCK G+ A +L +M+E + AV Y+ +IDG C G+
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ AF+ +EM +G TYN LI + + +L++M ++ I P+ +T+++
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G ++A L EM+ +GI P +TY SLI K+NR+ EA Q+ + ++KG
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PDI+ FN LI+G+C I+ L +EM V + VTYNTL+ G C+ GK+E A+
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L +M R ++PD +S Y L+ GLC N E + A E+ ++ + D Y
Sbjct: 459 KLFQEMVSRRVRPDIVS-------YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIY 511
Query: 301 FSLIEGIASVDKAAESSN 318
+I G+ + K ++ +
Sbjct: 512 MIIIHGMCNASKVDDAWD 529
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 189/342 (55%), Gaps = 31/342 (9%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G +PD+ + + ++G+C E R+ EA ++++M E G PT +T NTL++G C G + A
Sbjct: 153 GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
D MV+ G P TY +++ + + A ++L++M E+ I D++ Y+I+I+G
Sbjct: 213 VVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ G+ AF+L +EM KG + ++TY +LI R + +L + + + + P+
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN 332
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+V F+ LID G + A LLKEM + + P+ +TYN+L+ G C++ ++EEA +++D
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVD 392
Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
M +G PD ++FN +TYN L+QG C++
Sbjct: 393 LMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSG 452
Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAE 315
+ ++A++L +EMVS+ + PD +Y L++G+ ++KA E
Sbjct: 453 KLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALE 494
Score = 195 bits (495), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 180/345 (52%), Gaps = 28/345 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ R ++ D+ Y + G+CK+G L+ A + +M+ G +TYNTLI G+CN G
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ +M+K+ I P T+++LI + E K+ EAD +LKEM ++GI P++ITYN
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G+C+ ++A + D MI KG P ++T+ LI K NR+ + +LF +G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++ + V +N L+ G C +G +E A L +EM +V PD V+Y L+ G C G++E+A
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493
Query: 241 RLLDQMKRRGIKPD--------HISFNPTRL--------------------TYNALIQGL 272
+ ++++ ++ D H N +++ YN +I L
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISEL 553
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
C+ A+ L R+M +G PD+ TY LI D A ++
Sbjct: 554 CRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAA 598
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 159/309 (51%), Gaps = 7/309 (2%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
P + S + K + E + +QM+ G+ + T + +I+ +C L AFS
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
+++K G P +N L++ L +E ++ EA +++ M E G P IT N L+NG C
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
G A L D M+ G QP +TY ++ V+ K + A +L + + D V
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
++ +IDG C +G+++ AF+L EM+ D +TYNTL+ G C G+ ++ +LL M
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
+R I P+ + T++ LI K + A++LL+EM+ +GI P+ TY SLI+G
Sbjct: 326 KRKISPNVV-------TFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 378
Query: 308 ASVDKAAES 316
++ E+
Sbjct: 379 CKENRLEEA 387
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 144/292 (49%), Gaps = 7/292 (2%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
+ ++A + M ++ +PT + +N L E+ + +M +GI + T +
Sbjct: 68 KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
++I+ RK+ A + ++ + G PD++ +N L+NG C +A L D M+
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
G +PT++T +L+ L ++ +A L + + G P+ V + +++ C +G A
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
LL++M+ + D V Y+ ++ G C+ G ++ A L ++M+ +G K D I T
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADII-------T 300
Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
YN LI G C D +LLR+M+ + I+P+ T+ LI+ K E+
Sbjct: 301 YNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 182/317 (57%), Gaps = 13/317 (4%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G P+ +YG+ ++ +CK +L EA + M++ G+ P YN LIDG C+KG
Sbjct: 485 MEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGK 544
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E AF F EM+K+GI TYN LI L M K+ EA+D+L E+ KG+ PD TYN
Sbjct: 545 IEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNS 604
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+GY GN ++ +L++EM GI+PT+ TY LI + +K E +L E +
Sbjct: 605 LISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTK-----EGIELTERLFGEM 659
Query: 181 ML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
L PD++++N ++ + +G++E+AF+L K+M + D+ TYN+L+ G+ + GK+ E
Sbjct: 660 SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEV 719
Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
R L+D+M R ++P+ TYN +++G C+ ++ A REM KG D
Sbjct: 720 RSLIDEMNAREMEPEAD-------TYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCI 772
Query: 300 YFSLIEGIASVDKAAES 316
L+ G+ ++ E+
Sbjct: 773 GNELVSGLKEEWRSKEA 789
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/316 (31%), Positives = 180/316 (56%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK + P + Y + G+CK R+ +A ++ ++M L+P+ +TYNTLIDGYC GN
Sbjct: 205 MKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGN 264
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
E +F R+ M I P+ T+N L+ L + +A+++LKEM + G VPD+ T++I
Sbjct: 265 PEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSI 324
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L +GY A+ A +++ + G++ T + L+ L K+ ++ +A+++ +AKG
Sbjct: 325 LFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKG 384
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++P+ V++N +IDG+C G++ A ++ M++ + PD + YN L+ C G++E A
Sbjct: 385 LVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAE 444
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ +++MK +G+ +P+ TYN LI G + E D ++L+EM G P+ +Y
Sbjct: 445 KEVNKMKLKGV-------SPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSY 497
Query: 301 FSLIEGIASVDKAAES 316
+LI + K E+
Sbjct: 498 GTLINCLCKGSKLLEA 513
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 166/302 (54%), Gaps = 11/302 (3%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
GV+ ++YT ++ +CKEG++E+A +L + GLVP V YNT+IDGYC KG+L A
Sbjct: 349 GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGA 408
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
+ M KQG+ P YN LI +M A+ + +M KG+ P TYNILI G
Sbjct: 409 RMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGG 468
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
Y R K F + EM G P +++Y +LI L K ++++EA + + +G+ P
Sbjct: 469 YGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPK 528
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+ ++N LIDG C+ G IE AF KEM + + + VTYNTL+ G GK+ EA LL
Sbjct: 529 VRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLL 588
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQ--GLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
++ R+G+KPD TYN+LI G N + +A L EM GI P TY
Sbjct: 589 EISRKGLKPD-------VFTYNSLISGYGFAGNVQRCIA--LYEEMKRSGIKPTLKTYHL 639
Query: 303 LI 304
LI
Sbjct: 640 LI 641
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 162/317 (51%), Gaps = 15/317 (4%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G++PD Y + C+ G +E A + + +MK G+ P+ TYN LI GY K
Sbjct: 415 MEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYE 474
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ F EM G MP +Y LI+ L K++EA + ++M ++G+ P YN+
Sbjct: 475 FDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNM 534
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G C G + AF EM+ KGI+ ++TY +LI LS ++ EA+ L KG
Sbjct: 535 LIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+ +N+LI G+ GN++R +L +EM R + P TY+ L+ C + +E
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI-SLCTKEGIELTE 653
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDN 298
RL +M S P L YN ++ C GD+ A L ++M+ K I D
Sbjct: 654 RLFGEM----------SLKPDLLVYNGVLH--CYAVHGDMEKAFNLQKQMIEKSIGLDKT 701
Query: 299 TYFSLIEGIASVDKAAE 315
TY SLI G V K E
Sbjct: 702 TYNSLILGQLKVGKLCE 718
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 171/318 (53%), Gaps = 7/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK+ ++P T+ + + G+ K G +E+A +L++MK+ G VP A T++ L DGY +
Sbjct: 275 MKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEK 334
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
E A + V G+ A T ++L++ L E K+ +A+++L KG+VP+ + YN
Sbjct: 335 AEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNT 394
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I+GYCR G+ A + M +G++P L Y LI + M A++ KG
Sbjct: 395 MIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKG 454
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P + +N LI G+ ++ F +LKEM+ P+ V+Y TL++ C+ K+ EA+
Sbjct: 455 VSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQ 514
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ M+ RG+ P R+ YN LI G C + + A +EM+ KGI + TY
Sbjct: 515 IVKRDMEDRGVSPK------VRI-YNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTY 567
Query: 301 FSLIEGIASVDKAAESSN 318
+LI+G++ K +E+ +
Sbjct: 568 NTLIDGLSMTGKLSEAED 585
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 44/342 (12%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+++ G+ P S + + + K + + + E+ P+ Y I +
Sbjct: 135 LRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSD 194
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ + M I P+ YN+LI L ++M +A+ + EM + ++P ITYN
Sbjct: 195 VGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNT 254
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+GYC+ GN +K+F + + M I+P+++T+ +L+ L K + +A+ + + G
Sbjct: 255 LIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG 314
Query: 181 MLPDIVMFNALIDGH-----------------------------------CTNGNIERAF 205
+PD F+ L DG+ C G IE+A
Sbjct: 315 FVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAE 374
Query: 206 SLL-KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
+L +EM + V P+EV YNT++ G CR+G + AR ++ M+++G+KPDH L
Sbjct: 375 EILGREMAKGLV-PNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDH-------LA 426
Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
YN LI+ C+ E + AE+ + +M KG++P TY LI G
Sbjct: 427 YNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGG 468
Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 4/249 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G++ + TY + + G+ G+L EA +L ++ GL P TYN+LI GY GN
Sbjct: 555 MLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGN 614
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ + +EM + GI PT TY+LLI L ++ +E + L GE + PD + YN
Sbjct: 615 VQRCIALYEEMKRSGIKPTLKTYHLLIS--LCTKEGIELTERL--FGEMSLKPDLLVYNG 670
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+++ Y G+ +KAF+L +MI K I TY SLI K ++ E L + A+
Sbjct: 671 VLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNARE 730
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
M P+ +N ++ GHC + A+ +EM D N L+ G + + +EA
Sbjct: 731 MEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAE 790
Query: 241 RLLDQMKRR 249
++ +M R
Sbjct: 791 IVISEMNGR 799
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 8/230 (3%)
Query: 85 LLIHELLMERKMV-EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143
LL+ LL E KM+ EA D+ + +GI P S + +L++ + + ++ ++
Sbjct: 113 LLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILE 172
Query: 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203
+P+ Y I K + + + +LF + P + ++N LIDG C +
Sbjct: 173 SDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND 232
Query: 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263
A L EM ++ P +TYNTL+ G C+ G E++ ++ ++M K DHI P+ +
Sbjct: 233 AEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERM-----KADHI--EPSLI 285
Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
T+N L++GL K + AE +L+EM G PD T+ L +G +S +KA
Sbjct: 286 TFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKA 335
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 11/184 (5%)
Query: 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194
F+L +E GI P+ + T L+ L K + +F N L P M+ I
Sbjct: 133 FALRNE----GIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQA 188
Query: 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254
++ + L M +++P YN L+ G C+ ++ +A +L D+M R + P
Sbjct: 189 AVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPS 248
Query: 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314
I TYN LI G CK + + ++ M + I P T+ +L++G+
Sbjct: 249 LI-------TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVE 301
Query: 315 ESSN 318
++ N
Sbjct: 302 DAEN 305
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 164/297 (55%), Gaps = 7/297 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G+ PD TY S +SG+C GR +A+RM+ M + + P T+N LID +G
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGR 271
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A F +EM+++ + P TY+LLI+ L M ++ EA++M M KG PD +TY+I
Sbjct: 272 VSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI 331
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LINGYC+ + L EM +G+ +TYT LI + ++ A+++F + G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+I+ +N L+ G C NG IE+A +L +M + + D VTYN ++ G C+ G+V +A
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAW 451
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
+ + +G+ PD TY ++ GL K A+ L R+M GI P++
Sbjct: 452 DIYCSLNCQGLMPDI-------WTYTTMMLGLYKKGLRREADALFRKMKEDGILPNE 501
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/318 (33%), Positives = 169/318 (53%), Gaps = 7/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +P T+GS ++G C+ R+ +A M +QM G P V YNT+IDG C
Sbjct: 142 MIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQ 201
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + M K GI P TYN LI L + +A M+ M ++ I PD T+N
Sbjct: 202 VDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNA 261
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + G +A ++EMI + + P ++TY+ LI+ L +R+ EA+++F ++KG
Sbjct: 262 LIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG 321
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PD+V ++ LI+G+C + +E L EM + V + VTY L+ G CR GK+ A
Sbjct: 322 CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAE 381
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ +M G+ P+ I TYN L+ GLC N + + A +L +M G+ D TY
Sbjct: 382 EIFRRMVFCGVHPNII-------TYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTY 434
Query: 301 FSLIEGIASVDKAAESSN 318
+I G+ + A++ +
Sbjct: 435 NIIIRGMCKAGEVADAWD 452
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 159/308 (51%), Gaps = 7/308 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G+ + T ++ C+ +L A L +M + G P+ VT+ +L++G+C
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDR 166
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A D+MV G P YN +I L +++ A D+L M + GI PD +TYN
Sbjct: 167 VYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G C G A + M + I P + T+ +LI K+ R+ EA++ +E + +
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRS 286
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDIV ++ LI G C ++ A + M PD VTY+ L++G C+ KVE
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L +M +RG+ + + TY LIQG C+ + ++AEE+ R MV G+ P+ TY
Sbjct: 347 KLFCEMSQRGVVRNTV-------TYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITY 399
Query: 301 FSLIEGIA 308
L+ G+
Sbjct: 400 NVLLHGLC 407
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 28/272 (10%)
Query: 70 EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
MV+ +P+ + ++ L+ + +K + ++M GI + T NIL+N +CRC
Sbjct: 71 HMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCS 130
Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
A S +MI G +P+++T+ SL+ + +R+ +A +F+ + G P++V++N
Sbjct: 131 QLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYN 190
Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
+IDG C + ++ A LL M++ + PD VTYN+L+ G C G+ +A R++ M +R
Sbjct: 191 TIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKR 250
Query: 250 GIKPDHISFN----------------------------PTRLTYNALIQGLCKNQEGDLA 281
I PD +FN P +TY+ LI GLC D A
Sbjct: 251 EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEA 310
Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
EE+ MVSKG PD TY LI G K
Sbjct: 311 EEMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 27/216 (12%)
Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQ--------------------PTMLTYTSLIFVLS 161
I G+C A S + EM+ GI+ P++ ++ L+ +S
Sbjct: 33 ICGFCFSRRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAIS 92
Query: 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221
K + L+E G+ ++ N L++ C + A S L +M ++ P V
Sbjct: 93 KMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIV 152
Query: 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281
T+ +L++G CR +V +A + DQM G KP+ + YN +I GLCK+++ D A
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVV-------IYNTIIDGLCKSKQVDNA 205
Query: 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
+LL M GI PD TY SLI G+ S + ++++
Sbjct: 206 LDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 176/347 (50%), Gaps = 33/347 (9%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G++P+++TYG+F+SG + A + +++M+E G++P V LI+ YC KG
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK 572
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A S MV QGI+ A TY +L++ L K+ +A+++ +EM KGI PD +Y +
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING+ + GN +KA S+ DEM+ +G+ P ++ Y L+ + + +A +L + KG
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+ V + +IDG+C +G++ AF L EM + PD Y TL+ G CR VE A
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 752
Query: 241 RLLDQMKRRGIKPDHISFN--------------------------------PTRLTYNAL 268
+ ++G FN P +TYN +
Sbjct: 753 TIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811
Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
I LCK + A+EL +M + + P TY SL+ G + + AE
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAE 858
Score = 194 bits (494), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 11/308 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M + G +P+ Y + + + R +A R+L++MKE G+ P YN+LI G
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR 502
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A SF EMV+ G+ P A TY I + + AD +KEM E G++P+ +
Sbjct: 503 MDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTG 562
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LIN YC+ G +A S + M+ +GI TYT L+ L K +++ +A+++F KG
Sbjct: 563 LINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKG 622
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+ + LI+G GN+++A S+ EM + P+ + YN L+ G CR G++E+A+
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
LLD+M +G+ P+ + TY +I G CK+ GDLAE L EM KG+ PD
Sbjct: 683 ELLDEMSVKGLHPNAV-------TYCTIIDGYCKS--GDLAEAFRLFDEMKLKGLVPDSF 733
Query: 299 TYFSLIEG 306
Y +L++G
Sbjct: 734 VYTTLVDG 741
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 149/274 (54%), Gaps = 7/274 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK +G+ PD + Y S + G+ K R++EA L +M ENGL P A TY I GY
Sbjct: 478 MKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASE 537
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A + EM + G++P LI+E + K++EA + M ++GI+ D+ TY +
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+NG + A + EM KGI P + +Y LI SK M +A +F+ + +G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+++++N L+ G C +G IE+A LL EM +HP+ VTY T++ G C+ G + EA
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
RL D+MK +G+ PD Y L+ G C+
Sbjct: 718 RLFDEMKLKGLVPDS-------FVYTTLVDGCCR 744
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 165/344 (47%), Gaps = 28/344 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M + G+ P + Y S + G C+E + + +L +MK+ +V + TY T++ G C+ G+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A++ EM+ G P Y LI L + +A +LKEM E+GI PD YN
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G + +A S EM+ G++P TY + I + + AD+ + G
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG 552
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+LP+ V+ LI+ +C G + A S + M + D TY LM+G + KV++A
Sbjct: 553 VLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAE 612
Query: 241 RLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQGL 272
+ +M+ +GI PD S+ P + YN L+ G
Sbjct: 613 EIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGF 672
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
C++ E + A+ELL EM KG+ P+ TY ++I+G AE+
Sbjct: 673 CRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716
Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 159/341 (46%), Gaps = 38/341 (11%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G+ PD ++YG ++G K G +++AS + ++M E GL P + YN L+ G+C G
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A DEM +G+ P A TY +I + EA + EM KG+VPDS Y
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI---FVLSKQNRMIEA-DQLFENF 176
L++G CR + ++A ++ KG + + +LI F K E ++L +
Sbjct: 738 LVDGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGS 796
Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
+ P+ V +N +ID C GN+E A L +M + P +TY +L++G + G+
Sbjct: 797 FDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRR 856
Query: 237 EEARRLLDQMKRRGIKPDHISFNP---------------------------------TRL 263
E + D+ GI+PDHI ++ +
Sbjct: 857 AEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSIS 916
Query: 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
T AL+ G K E ++AE+++ MV PD T LI
Sbjct: 917 TCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELI 957
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 28/322 (8%)
Query: 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM------------ 63
+ + + RL+ + + M E +V TY+ LI +C GN+++
Sbjct: 192 LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEF 251
Query: 64 ---------AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
A ++ M+ +G++P TY++LI L +++ +A +L EM G+ D
Sbjct: 252 RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLD 311
Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
+ TY++LI+G + NA A L EM+ GI Y I V+SK+ M +A LF+
Sbjct: 312 NHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFD 371
Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
+A G++P + +LI+G+C N+ + + LL EM + + TY T++ G C G
Sbjct: 372 GMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431
Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
++ A ++ +M G +P+ + Y LI+ +N A +L+EM +GI
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVV-------IYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484
Query: 295 PDDNTYFSLIEGIASVDKAAES 316
PD Y SLI G++ + E+
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEA 506
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 148/319 (46%), Gaps = 7/319 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G+ P YTY + G+CK RLE+A +L +M G+ TY+ LIDG N
Sbjct: 268 MICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRN 327
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A EMV GI Y+ I + E M +A + M G++P + Y
Sbjct: 328 ADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYAS 387
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI GYCR N ++ + L EM + I + TY +++ + + A + + +A G
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P++V++ LI N A +LKEM + PD YN+L+ G + +++EAR
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEAR 507
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M G+KP+ TY A I G + E A++ ++EM G+ P+
Sbjct: 508 SFLVEMVENGLKPNA-------FTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLC 560
Query: 301 FSLIEGIASVDKAAESSNS 319
LI K E+ ++
Sbjct: 561 TGLINEYCKKGKVIEACSA 579
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 149/343 (43%), Gaps = 53/343 (15%)
Query: 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA--------------------VTY 48
DS+++ + +C G E+A ++E+M E P A V +
Sbjct: 98 DSFSFLAL--DLCNFGSFEKALSVVERMIERNW-PVAEVWSSIVRCSQEFVGKSDDGVLF 154
Query: 49 NTLIDGYCNKGNLEMA-FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG 107
L DGY KG +E A F F M + ++P S +L+ LL ++ D+ K M
Sbjct: 155 GILFDGYIAKGYIEEAVFVFSSSMGLE-LVPRLSRCKVLLDALLRWNRLDLFWDVYKGMV 213
Query: 108 EKGIVPDSITYNILINGYCRCGNAK---------------------KAFSLHDEMIHKGI 146
E+ +V D TY++LI +CR GN + A L + MI KG+
Sbjct: 214 ERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGL 273
Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
P TY LI L K R+ +A L + G+ D ++ LIDG N + A
Sbjct: 274 VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKG 333
Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
L+ EM ++ Y+ + ++G +E+A+ L D M G+ P + Y
Sbjct: 334 LVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA-------YA 386
Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
+LI+G C+ + ELL EM + I TY ++++G+ S
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCS 429
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 109/278 (39%), Gaps = 78/278 (28%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G+ P++ TY + + G CK G L EA R+ ++MK GLVP + Y TL+DG C +
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747
Query: 61 LEMA-------------------------FSFRDEMVKQGIM-------------PTAST 82
+E A F F +K ++ P T
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807
Query: 83 YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142
YN++I L E + A ++ +M ++P ITY L+NGY + G + F + DE I
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867
Query: 143 HKGIQPTMLTYTSLIFVLSKQNRMIEA----DQLF------------------------- 173
GI+P + Y+ +I K+ +A DQ+F
Sbjct: 868 AAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAK 927
Query: 174 -----------ENFLAKGMLPDIVMFNALIDGHCTNGN 200
EN + +PD LI+ C + N
Sbjct: 928 VGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSN 965
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
+P+ TY + +CKEG LE A + QM+ L+PT +TY +L++GY G F
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI-----L 121
DE + GI P Y+++I+ L E +A ++ +M K V D +I L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921
Query: 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF-VLSKQNRMIEADQL 172
++G+ + G + A + + M+ P T LI N+ +EAD +
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 44/223 (19%)
Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI-----FVLSKQNRMIEADQ 171
+++ L C G+ +KA S+ + MI + P ++S++ FV K + +
Sbjct: 99 SFSFLALDLCNFGSFEKALSVVERMIERN-WPVAEVWSSIVRCSQEFV-GKSDDGVLFGI 156
Query: 172 LFENFLAKG----------------MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
LF+ ++AKG ++P + L+D ++ + + K M
Sbjct: 157 LFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERN 216
Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
V D TY+ L+ CR G V+ + +L + ++ F L N
Sbjct: 217 VVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKE--------FRTATL-----------N 257
Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
+G L +L M+ KG+ P TY LI+G+ + + ++ +
Sbjct: 258 VDGAL--KLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKS 298
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 194 bits (493), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 168/307 (54%), Gaps = 7/307 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S G++P+ Y Y ++ +C++ ++EEA +M E MK++G++P TY+ +IDGYC GN
Sbjct: 225 MTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGN 284
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A+ E++ ++P + L+ R++V A + M + G+ P+ YN
Sbjct: 285 VRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNC 344
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G+C+ GN +A L EM + P + TYT LI L ++++ EA++LF+ +
Sbjct: 345 LIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNER 404
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P +N+LI G+C N+E+A L EM V P+ +T++TL+ G C ++ A
Sbjct: 405 IFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAM 464
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M +GI PD + TY ALI K A L +M+ GI P+D+T+
Sbjct: 465 GLYFEMTIKGIVPDVV-------TYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTF 517
Query: 301 FSLIEGI 307
L++G
Sbjct: 518 ACLVDGF 524
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 7/303 (2%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
PDS S ++G+ + R + + M GLVP Y L +G
Sbjct: 162 PDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKL 221
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
DEM GI P Y + I +L + KM EA+ M + M + G++P+ TY+ +I+GYC+
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCK 281
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
GN ++A+ L+ E++ + P ++ + +L+ K ++ A LF + + G+ P++ +
Sbjct: 282 TGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYV 341
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
+N LI GHC +GN+ A LL EM+ + + PD TY L++G C + +V EA RL +MK
Sbjct: 342 YNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMK 401
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
I P+ TYN+LI G CK + A +L EM + G+ P+ T+ +LI+G
Sbjct: 402 NERI-------FPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGY 454
Query: 308 ASV 310
+V
Sbjct: 455 CNV 457
Score = 164 bits (414), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 152/298 (51%), Gaps = 11/298 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M GV P+ Y Y + G CK G + EA +L +M+ L P TY LI+G C +
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQ 389
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A +M + I P+++TYN LIH E M +A D+ EM G+ P+ IT++
Sbjct: 390 VAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFST 449
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+GYC + K A L+ EM KGI P ++TYT+LI K+ M EA +L+ + L G
Sbjct: 450 LIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAG 509
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+ F L+DG G + A +E ++ + + V + L+ G C+ G + A
Sbjct: 510 IHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRAS 569
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE--MVSKGITPD 296
R M+ GI PD S Y ++++G QE + + ++ + M+ GI P+
Sbjct: 570 RFFSDMRSCGITPDICS-------YVSMLKG--HLQEKRITDTMMLQCDMIKTGILPN 618
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Query: 106 MGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165
M +G+VPD Y +L + G K L DEM GI+P + YT I L + N+
Sbjct: 190 MISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNK 249
Query: 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
M EA+++FE G+LP++ ++A+IDG+C GN+ +A+ L KE+ ++ P+ V + T
Sbjct: 250 MEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGT 309
Query: 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285
L+ G C+ ++ AR L M + G+ +P YN LI G CK+ A LL
Sbjct: 310 LVDGFCKARELVTARSLFVHMVKFGV-------DPNLYVYNCLIHGHCKSGNMLEAVGLL 362
Query: 286 REMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
EM S ++PD TY LI G+ D+ AE++
Sbjct: 363 SEMESLNLSPDVFTYTILINGLCIEDQVAEAN 394
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 130/286 (45%), Gaps = 35/286 (12%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+S + PD +TY ++G+C E ++ EA+R+ ++MK + P++ TYN+LI GYC + N
Sbjct: 365 MESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYN 424
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A EM G+ P T++ LI R + A + EM KGIVPD +TY
Sbjct: 425 MEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTA 484
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM-------------- 166
LI+ + + N K+A L+ +M+ GI P T+ L+ K+ R+
Sbjct: 485 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQR 544
Query: 167 ---------------------IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
+ A + F + + G+ PDI + +++ GH I
Sbjct: 545 SCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTM 604
Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251
L +M + + P+ + L G V+ A L + + + +
Sbjct: 605 MLQCDMIKTGILPNLLVNQLLARFYQANGYVKSACFLTNSSRLKTV 650
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 55/232 (23%)
Query: 127 RCGNAKKAFSLHDEMIHKGIQPT--MLTYTSLIFVLSKQNRMIEADQLFENFLAK----- 179
+C +A++AF L + + + + +++++I VL+ ++ A L ++ + +
Sbjct: 50 KCRSAEEAFKLFETSSRSRVSKSNDLQSFSAVIHVLTGAHKYTLARCLIKSLIERLKRHS 109
Query: 180 ----------GMLPDIV-------MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
L DI +F+ LI G E A + +EM K PD
Sbjct: 110 EPSNMSHRLFNALEDIQSPKFSIGVFSLLIMEFLEMGLFEEALWVSREM---KCSPDSKA 166
Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD-HISF----------------------- 258
++++G R+ + + M RG+ PD HI F
Sbjct: 167 CLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMT 226
Query: 259 ----NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
P Y I LC++ + + AE++ M G+ P+ TY ++I+G
Sbjct: 227 SLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDG 278
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 194 bits (493), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 180/332 (54%), Gaps = 28/332 (8%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G +PD+ T+ + ++G+C EGR+ EA ++++M E G PT +T N L++G C G + A
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
D MV+ G P TY ++ + + A ++L++M E+ I D++ Y+I+I+G
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ G+ AF+L +EM KG + ++ YT+LI R + +L + + + + PD
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+V F+ALID G + A L KEM + + PD VTY +L+ G C++ ++++A +LD
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376
Query: 245 QMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKNQ 276
M +G P+ +FN +TYN LIQG C+
Sbjct: 377 LMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436
Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
+ ++A+EL +EMVS+ + PD +Y L++G+
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 170/318 (53%), Gaps = 7/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G QP+ TYG + MCK G+ A +L +M+E + AV Y+ +IDG C G+
Sbjct: 203 MVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ AF+ +EM +G Y LI + + +L++M ++ I PD + ++
Sbjct: 263 LDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G ++A LH EMI +GI P +TYTSLI K+N++ +A+ + + ++KG
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P+I FN LI+G+C I+ L ++M V D VTYNTL+ G C GK+E A+
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M R ++PD +S Y L+ GLC N E + A E+ ++ + D Y
Sbjct: 443 ELFQEMVSRRVRPDIVS-------YKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIY 495
Query: 301 FSLIEGIASVDKAAESSN 318
+I G+ + K ++ +
Sbjct: 496 NIIIHGMCNASKVDDAWD 513
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 161/306 (52%), Gaps = 7/306 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G + D Y + + G C GR ++ +++L M + + P V ++ LID + +G
Sbjct: 273 MEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK 332
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A EM+++GI P TY LI E ++ +A+ ML M KG P+ T+NI
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LINGYC+ L +M +G+ +TY +LI + ++ A +LF+ +++
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDIV + L+DG C NG E+A + +++++ K+ D YN ++HG C KV++A
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + +G+KPD TYN +I GLCK A+ L R+M G +P+ TY
Sbjct: 513 DLFCSLPLKGVKPDV-------KTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565
Query: 301 FSLIEG 306
LI
Sbjct: 566 NILIRA 571
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 162/312 (51%), Gaps = 14/312 (4%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
+P + S + + + + + +QM+ G+ T + +I+ C L +AFS
Sbjct: 69 RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFS 128
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
+++K G P T++ LI+ L +E ++ EA +++ M E G P IT N L+NG C
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLC 188
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
G A L D M+ G QP +TY ++ V+ K + A +L + + D V
Sbjct: 189 LNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAV 248
Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
++ +IDG C +G+++ AF+L EM+ D + Y TL+ G C G+ ++ +LL M
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308
Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL--AEELLREMVSKGITPDDNTYFSLI 304
+R I PD ++F +ALI C +EG L AEEL +EM+ +GI+PD TY SLI
Sbjct: 309 IKRKITPDVVAF-------SALID--CFVKEGKLREAEELHKEMIQRGISPDTVTYTSLI 359
Query: 305 EGIA---SVDKA 313
+G +DKA
Sbjct: 360 DGFCKENQLDKA 371
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 135/254 (53%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG+ PD+ TY S + G CKE +L++A+ ML+ M G P T+N LI+GYC
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ +M +G++ TYN LI K+ A ++ +EM + + PD ++Y I
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C G +KA + +++ ++ + Y +I + +++ +A LF + KG
Sbjct: 463 LLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 522
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+ +N +I G C G++ A L ++M+ P+ TYN L+ +G ++
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSA 582
Query: 241 RLLDQMKRRGIKPD 254
+L++++KR G D
Sbjct: 583 KLIEEIKRCGFSVD 596
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RGV D+ TY + + G C+ G+LE A + ++M + P V+Y L+DG C+ G
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
E A +++ K + YN++IH + K+ +A D+ + KG+ PD TYNI
Sbjct: 473 PEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I G C+ G+ +A L +M G P TY LI + ++ +L E G
Sbjct: 533 MIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592
Query: 181 MLPDIVMFNALIDGHCTNGNIERAF 205
D ++D ++G ++++F
Sbjct: 593 FSVDASTVKMVVD-MLSDGRLKKSF 616
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 172/312 (55%), Gaps = 7/312 (2%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
V D Y++G + G C+ G +E++ +L ++ E G P V Y TLIDG C KG +E A
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAK 218
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
EM K G++ TY +LI+ L + +M ++M E G+ P+ TYN ++N
Sbjct: 219 DLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278
Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
C+ G K AF + DEM +G+ ++TY +LI L ++ ++ EA+++ + + G+ P++
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338
Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
+ +N LIDG C G + +A SL +++ + P VTYN L+ G CR+G A +++ +
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
M+ RGIK P+++TY LI ++ + A +L M G+ PD +TY LI
Sbjct: 399 MEERGIK-------PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIH 451
Query: 306 GIASVDKAAESS 317
G + E+S
Sbjct: 452 GFCIKGQMNEAS 463
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 170/304 (55%), Gaps = 8/304 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ GV P+ YTY ++ +CK+GR ++A ++ ++M+E G+ VTYNTLI G C +
Sbjct: 259 MQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMK 318
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A D+M GI P TYN LI K+ +A + +++ +G+ P +TYNI
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G+CR G+ A + EM +GI+P+ +TYT LI ++ + M +A QL + G
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++PD+ ++ LI G C G + A L K M P+EV YNT++ G C++G A
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRAL 498
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+LL +M+ + + P+ S Y +I+ LCK ++ AE L+ +M+ GI P +
Sbjct: 499 KLLKEMEEKELAPNVAS-------YRYMIEVLCKERKSKEAERLVEKMIDSGIDP-STSI 550
Query: 301 FSLI 304
SLI
Sbjct: 551 LSLI 554
Score = 178 bits (451), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 168/316 (53%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G+ + TY ++G+ K G ++ M E+M+E+G+ P TYN +++ C G
Sbjct: 224 MGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR 283
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ AF DEM ++G+ TYN LI L E K+ EA+ ++ +M GI P+ ITYN
Sbjct: 284 TKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNT 343
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G+C G KA SL ++ +G+ P+++TY L+ ++ A ++ + +G
Sbjct: 344 LIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERG 403
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P V + LID + N+E+A L M+ + + PD TY+ L+HG C +G++ EA
Sbjct: 404 IKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
RL M + +P+ + YN +I G CK A +LL+EM K + P+ +Y
Sbjct: 464 RLFKSMVEKNCEPNEV-------IYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASY 516
Query: 301 FSLIEGIASVDKAAES 316
+IE + K+ E+
Sbjct: 517 RYMIEVLCKERKSKEA 532
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 156/303 (51%), Gaps = 9/303 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G P+ Y + + G CK+G +E+A + +M + GLV TY LI+G G +
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
F ++M + G+ P TYN ++++L + + +A + EM E+G+ + +TYN LI G
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
CR +A + D+M GI P ++TY +LI ++ +A L + ++G+ P
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+V +N L+ G C G+ A ++KEM+ + P +VTY L+ R +E+A +L
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432
Query: 245 QMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
M+ G+ PD H TY+ LI G C + + A L + MV K P++ Y ++
Sbjct: 433 SMEELGLVPDVH--------TYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484
Query: 304 IEG 306
I G
Sbjct: 485 ILG 487
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 29/307 (9%)
Query: 33 LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
+M +NG VP + +N L+ + +SF +E K ++ ++ +LI
Sbjct: 117 FNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN-KSKVVLDVYSFGILIKGCCE 175
Query: 93 ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
++ ++ D+L E+ E G P+ + Y LI+G C+ G +KA L EM G+ T
Sbjct: 176 AGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERT 235
Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
YT LI L K + +++E G+ P++ +N +++ C +G + AF + EM
Sbjct: 236 YTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR 295
Query: 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------------- 259
V + VTYNTL+ G CR+ K+ EA +++DQMK GI P+ I++N
Sbjct: 296 ERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLG 355
Query: 260 ---------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
P+ +TYN L+ G C+ + A ++++EM +GI P TY LI
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415
Query: 305 EGIASVD 311
+ A D
Sbjct: 416 DTFARSD 422
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ RG++P TY + + +E+A ++ M+E GLVP TY+ LI G+C KG
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A MV++ P YN +I E A +LKEM EK + P+ +Y
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
+I C+ +K+A L ++MI GI P+ TS++ ++S+
Sbjct: 519 MIEVLCKERKSKEAERLVEKMIDSGIDPS----TSILSLISR 556
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 170/337 (50%), Gaps = 29/337 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M + G++PDSYTY + ++G CK G ++ A R++ NG VP TY +LIDG C++G
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGE 371
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A + +E + +GI P YN LI L + ++EA + EM EKG++P+ T+NI
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+NG C+ G A L MI KG P + T+ LI S Q +M A ++ + L G
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG 491
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+ +N+L++G C E K M P+ T+N L+ CR K++EA
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEAL 551
Query: 241 RLLDQMKRRGIKPDHISF-----------------------------NPTRLTYNALIQG 271
LL++MK + + PD ++F + + TYN +I
Sbjct: 552 GLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611
Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
+ +AE+L +EMV + + PD TY +++G
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 173/351 (49%), Gaps = 42/351 (11%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M + GV T+ + +CK+G ++E ++L+++ + G++P TYN I G C +G
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE 266
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A +++QG P TYN LI+ L K EA+ L +M +G+ PDS TYN
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNT 326
Query: 121 LINGYCR---------------------------------C--GNAKKAFSLHDEMIHKG 145
LI GYC+ C G +A +L +E + KG
Sbjct: 327 LIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKG 386
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
I+P ++ Y +LI LS Q ++EA QL KG++P++ FN L++G C G + A
Sbjct: 387 IKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD 446
Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
L+K M PD T+N L+HG Q K+E A +LD M G+ PD TY
Sbjct: 447 GLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPD-------VYTY 499
Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
N+L+ GLCK + + E + MV KG P+ T+ L+E + K E+
Sbjct: 500 NSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEA 550
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 158/305 (51%), Gaps = 7/305 (2%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
+G +PD TY + + G+CK + +EA L +M GL P + TYNTLI GYC G +++
Sbjct: 280 QGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQL 339
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
A + V G +P TY LI L E + A + E KGI P+ I YN LI
Sbjct: 340 AERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIK 399
Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
G G +A L +EM KG+ P + T+ L+ L K + +AD L + ++KG P
Sbjct: 400 GLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFP 459
Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
DI FN LI G+ T +E A +L M V PD TYN+L++G C+ K E+
Sbjct: 460 DIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETY 519
Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
M +G P+ T+N L++ LC+ ++ D A LL EM +K + PD T+ +L
Sbjct: 520 KTMVEKGCAPN-------LFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTL 572
Query: 304 IEGIA 308
I+G
Sbjct: 573 IDGFC 577
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 159/315 (50%), Gaps = 8/315 (2%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
+G++P+ Y + + G+ +G + EA+++ +M E GL+P T+N L++G C G +
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
A M+ +G P T+N+LIH + KM A ++L M + G+ PD TYN L+N
Sbjct: 445 ADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLN 504
Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
G C+ + + M+ KG P + T+ L+ L + ++ EA L E K + P
Sbjct: 505 GLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNP 564
Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDR-MKVHPDEVTYNTLMHGRCRQGKVEEARRL 242
D V F LIDG C NG+++ A++L ++M+ KV TYN ++H + V A +L
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKL 624
Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
+M R + PD TY ++ G CK +L + L EM+ G P T
Sbjct: 625 FQEMVDRCLGPDG-------YTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGR 677
Query: 303 LIEGIASVDKAAESS 317
+I + D+ E++
Sbjct: 678 VINCLCVEDRVYEAA 692
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 164/344 (47%), Gaps = 42/344 (12%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----- 55
M+ RG+ PD Y++ + CK R A R+L M G V Y T++ G+
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196
Query: 56 ------------------------------CNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
C KG+++ D+++K+G++P TYNL
Sbjct: 197 KAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNL 256
Query: 86 LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
I L ++ A M+ + E+G PD ITYN LI G C+ ++A +M+++G
Sbjct: 257 FIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG 316
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
++P TY +LI K + A+++ + + G +PD + +LIDG C G RA
Sbjct: 317 LEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRAL 376
Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
+L E + P+ + YNTL+ G QG + EA +L ++M +G+ P+ T+
Sbjct: 377 ALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPE-------VQTF 429
Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
N L+ GLCK A+ L++ M+SKG PD T+ LI G ++
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYST 473
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 138/258 (53%), Gaps = 1/258 (0%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S+G PD +T+ + G + ++E A +L+ M +NG+ P TYN+L++G C
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSK 511
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
E MV++G P T+N+L+ L RK+ EA +L+EM K + PD++T+
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571
Query: 121 LINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
LI+G+C+ G+ A++L +M + + TY +I +++ + A++LF+ + +
Sbjct: 572 LIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR 631
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
+ PD + ++DG C GN+ + L EM P T +++ C + +V EA
Sbjct: 632 CLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEA 691
Query: 240 RRLLDQMKRRGIKPDHIS 257
++ +M ++G+ P+ ++
Sbjct: 692 AGIIHRMVQKGLVPEAVN 709
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 151/315 (47%), Gaps = 10/315 (3%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
+P ++Y + +S + G ++A ++ +M++ G+ P ++ + +C A
Sbjct: 108 EPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALR 167
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
+ M QG Y ++ E E ++ +M G+ T+N L+ C
Sbjct: 168 LLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLC 227
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
+ G+ K+ L D++I +G+ P + TY I L ++ + A ++ + +G PD++
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVI 287
Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
+N LI G C N + A L +M + PD TYNTL+ G C+ G V+ A R++
Sbjct: 288 TYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDA 347
Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
G PD + TY +LI GLC E + A L E + KGI P+ Y +LI+G
Sbjct: 348 VFNGFVPD-------QFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400
Query: 307 IAS---VDKAAESSN 318
+++ + +AA+ +N
Sbjct: 401 LSNQGMILEAAQLAN 415
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 10/298 (3%)
Query: 14 GSFVSGM---CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
G +V M ++G+++EA + E+M PT +YN ++ + G + A
Sbjct: 77 GVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMR 136
Query: 71 MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130
M +GI P ++ + + + A +L M +G + + Y ++ G+
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196
Query: 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190
+ + L +M+ G+ + T+ L+ VL K+ + E ++L + + +G+LP++ +N
Sbjct: 197 KAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNL 256
Query: 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250
I G C G ++ A ++ + PD +TYN L++G C+ K +EA L +M G
Sbjct: 257 FIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG 316
Query: 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
++PD TYN LI G CK LAE ++ + V G PD TY SLI+G+
Sbjct: 317 LEPDS-------YTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC 367
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 149/306 (48%), Gaps = 8/306 (2%)
Query: 2 KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGN 60
K G + TY S + + G+ E +L M+EN G Y + Y KG
Sbjct: 32 KEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGK 91
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A + + M PT +YN ++ L+ +A + M ++GI PD ++ I
Sbjct: 92 VQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+ +C+ A L + M +G + ++ Y +++ ++N E +LF LA G
Sbjct: 152 RMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ + FN L+ C G+++ LL ++ + V P+ TYN + G C++G+++ A
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAV 271
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
R++ + +G KPD I TYN LI GLCKN + AE L +MV++G+ PD TY
Sbjct: 272 RMVGCLIEQGPKPDVI-------TYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTY 324
Query: 301 FSLIEG 306
+LI G
Sbjct: 325 NTLIAG 330
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 171/317 (53%), Gaps = 11/317 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++G++P+ TY S ++ +C GR +ASR+L M E + P VT+N LID + +G
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGK 343
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A +EM+++ I P TYNLLI+ M ++ EA M K M K +P+ TYN
Sbjct: 344 LVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNT 403
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING+C+C + L EM +G+ +TYT++I + A +F+ ++
Sbjct: 404 LINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR 463
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ DI+ ++ L+ G C+ G ++ A + K + + ++ + YNT++ G C+ GKV EA
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW 523
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + IKPD + TYN +I GLC + A++L R+M G P+ TY
Sbjct: 524 DLFCSL---SIKPDVV-------TYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTY 573
Query: 301 FSLIEG-IASVDKAAES 316
+LI + D+AA +
Sbjct: 574 NTLIRANLRDCDRAASA 590
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 171/315 (54%), Gaps = 7/315 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M++ G+ D YTY F++ C+ +L A +L +M + G P VT ++L++GYC+
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A + D+MV+ G P T+ LIH L + K EA ++ +M ++G PD +TY
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT 228
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
++NG C+ G+ A +L ++M I+ ++ + ++I L K + A LF KG
Sbjct: 229 VVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKG 288
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++V +N+LI+ C G A LL M K++P+ VT+N L+ ++GK+ EA
Sbjct: 289 IRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAE 348
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L ++M +R I PD I TYN LI G C + D A+++ + MVSK P+ TY
Sbjct: 349 KLHEEMIQRSIDPDTI-------TYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401
Query: 301 FSLIEGIASVDKAAE 315
+LI G + +
Sbjct: 402 NTLINGFCKCKRVED 416
Score = 184 bits (467), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 168/312 (53%), Gaps = 7/312 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +PD++T+ + + G+ + EA +++QM + G P VTY T+++G C +G+
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGD 238
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+++A + ++M I +N +I L R + A D+ EM KGI P+ +TYN
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNS 298
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LIN C G A L M+ K I P ++T+ +LI K+ +++EA++L E + +
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD + +N LI+G C + ++ A + K M P+ TYNTL++G C+ +VE+
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M +RG+ + + TY +IQG + + D A+ + ++MVS + D TY
Sbjct: 419 ELFREMSQRGLVGNTV-------TYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTY 471
Query: 301 FSLIEGIASVDK 312
L+ G+ S K
Sbjct: 472 SILLHGLCSYGK 483
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 165/316 (52%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG QPD TYG+ V+G+CK G ++ A +L +M+ + V +NT+ID C +
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRH 273
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E+A EM +GI P TYN LI+ L + +A +L M EK I P+ +T+N
Sbjct: 274 VEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA 333
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + G +A LH+EMI + I P +TY LI NR+ EA Q+F+ ++K
Sbjct: 334 LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKD 393
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
LP+I +N LI+G C +E L +EM + + + VTY T++ G + G + A+
Sbjct: 394 CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQ 453
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ QM + D +TY+ L+ GLC + D A + + + + + Y
Sbjct: 454 MVFKQMVSNRVPTD-------IMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIY 506
Query: 301 FSLIEGIASVDKAAES 316
++IEG+ K E+
Sbjct: 507 NTMIEGMCKAGKVGEA 522
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 156/299 (52%), Gaps = 10/299 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M + + P+ T+ + + KEG+L EA ++ E+M + + P +TYN LI+G+C
Sbjct: 319 MLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNR 378
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A MV + +P TYN LI+ +++ + ++ +EM ++G+V +++TY
Sbjct: 379 LDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTT 438
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I G+ + G+ A + +M+ + ++TY+ L+ L ++ A +F+
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
M +I ++N +I+G C G + A+ L + + PD VTYNT++ G C + ++EA
Sbjct: 499 MELNIFIYNTMIEGMCKAGKVGEAWDLFCS---LSIKPDVVTYNTMISGLCSKRLLQEAD 555
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
L +MK G P+ TYN LI+ ++ + + EL++EM S G D +T
Sbjct: 556 DLFRKMKEDGTLPNS-------GTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDAST 607
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 148/292 (50%), Gaps = 7/292 (2%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
++++A + M ++ P+ V +N L+ E+ S ++M GI TY+
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
+ I+ ++ A +L +M + G PD +T + L+NGYC A +L D+M+
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
G +P T+T+LI L N+ EA L + + +G PD+V + +++G C G+I+ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
+LL +M+ ++ + V +NT++ C+ VE A L +M+ +GI+P+ + T
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVV-------T 295
Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
YN+LI LC A LL M+ K I P+ T+ +LI+ K E+
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEA 347
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 70 EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
+MVK P+ +N L+ + K + ++M GI D TY+I IN +CR
Sbjct: 73 DMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRS 132
Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
A ++ +M+ G +P ++T +SL+ R+ +A L + + G PD F
Sbjct: 133 QLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFT 192
Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
LI G + A +L+ +M + PD VTY T+++G C++G ++ A LL++M+
Sbjct: 193 TLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAA 252
Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309
IK + + FN +I LCK + ++A +L EM +KGI P+ TY SLI + +
Sbjct: 253 RIKANVVIFN-------TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCN 305
Query: 310 VDKAAESS 317
+ +++S
Sbjct: 306 YGRWSDAS 313
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70
+ Y + + GMCK G++ EA + + + P VTYNT+I G C+K L+ A +
Sbjct: 504 FIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRK 560
Query: 71 MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
M + G +P + TYN LI L + + +++KEM G V D+ T +++ N
Sbjct: 561 MKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTN 613
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD 219
LS ++ +A LF + + P IV FN L+ E SL ++M + + D
Sbjct: 58 LSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHD 117
Query: 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279
TY+ ++ CR+ ++ A +L +M + G +PD + T ++L+ G C ++
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIV-------TLSSLLNGYCHSKRIS 170
Query: 280 LAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
A L+ +MV G PD T+ +LI G+ +KA+E+
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 182/337 (54%), Gaps = 33/337 (9%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG PD TYG ++G+CK GR++ A + ++ + P V +NTLI G+ G
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGR 368
Query: 61 LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
L+ A + +MV GI+P TYN LI+ E + A ++L +M KG P+ +Y
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYT 428
Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
IL++G+C+ G +A+++ +EM G++P + + LI K++R+ EA ++F K
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 488
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
G PD+ FN+LI G C I+ A LL++M V + VTYNTL++ R+G+++EA
Sbjct: 489 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548
Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
R+L+++M +G D I++N P+ ++ N LI G
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608
Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
LC++ + A E +EMV +G TPD T+ SLI G+
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLC 645
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 166/307 (54%), Gaps = 7/307 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++G +P+ Y+Y V G CK G+++EA +L +M +GL P V +N LI +C +
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A EM ++G P T+N LI L ++ A +L++M +G+V +++TYN
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNT 534
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LIN + R G K+A L +EM+ +G +TY SLI L + + +A LFE L G
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P + N LI+G C +G +E A KEM PD VT+N+L++G CR G++E+
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ +++ GI PD + T+N L+ LCK A LL E + G P+ T+
Sbjct: 655 TMFRKLQAEGIPPDTV-------TFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTW 707
Query: 301 FSLIEGI 307
L++ I
Sbjct: 708 SILLQSI 714
Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 7/308 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+ S G+ PD TY S + G KEG + A +L M+ G P +Y L+DG+C G
Sbjct: 380 VTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A++ +EM G+ P +N LI E ++ EA ++ +EM KG PD T+N
Sbjct: 440 IDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 499
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G C K A L +MI +G+ +TY +LI ++ + EA +L + +G
Sbjct: 500 LISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
D + +N+LI G C G +++A SL ++M R P ++ N L++G CR G VEEA
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+M RG PD + T+N+LI GLC+ + + R++ ++GI PD T+
Sbjct: 620 EFQKEMVLRGSTPDIV-------TFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTF 672
Query: 301 FSLIEGIA 308
+L+ +
Sbjct: 673 NTLMSWLC 680
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 12/313 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M SR + P +T+G + C ++ A +L M ++G VP +V Y TLI
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNR 267
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A +EM G +P A T+N +I L ++ EA M+ M +G PD ITY
Sbjct: 268 VNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
L+NG C+ G A ++ ++ +P ++ + +LI R+ +A + + +
Sbjct: 328 LMNGLCKIGRVDAA----KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
G++PD+ +N+LI G+ G + A +L +M P+ +Y L+ G C+ GK++EA
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443
Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
+L++M G+KP+ + F N LI CK A E+ REM KG PD T
Sbjct: 444 YNVLNEMSADGLKPNTVGF-------NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 496
Query: 300 YFSLIEGIASVDK 312
+ SLI G+ VD+
Sbjct: 497 FNSLISGLCEVDE 509
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 125/240 (52%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G +PD YT+ S +SG+C+ ++ A +L M G+V VTYNTLI+ + +G
Sbjct: 485 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE 544
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A +EMV QG TYN LI L ++ +A + ++M G P +I+ NI
Sbjct: 545 IKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNI 604
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING CR G ++A EM+ +G P ++T+ SLI L + R+ + +F A+G
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD V FN L+ C G + A LL E P+ T++ L+ Q ++ R
Sbjct: 665 IPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRR 724
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 160/324 (49%), Gaps = 21/324 (6%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKE-NGLVPTAVTYNT----LIDGY 55
MK G+ + S + K G + +R++ +M+ PT +YN L+ G
Sbjct: 137 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 196
Query: 56 CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS 115
C+K +A + +M+ + I PT T+ +++ ++ A +L++M + G VP+S
Sbjct: 197 CHK----VAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNS 252
Query: 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175
+ Y LI+ +C +A L +EM G P T+ +I L K +R+ EA ++
Sbjct: 253 VIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNR 312
Query: 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235
L +G PD + + L++G C G ++ A L + + P+ V +NTL+HG G+
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGR 368
Query: 236 VEEARRLL-DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
+++A+ +L D + GI PD TYN+LI G K LA E+L +M +KG
Sbjct: 369 LDDAKAVLSDMVTSYGIVPD-------VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCK 421
Query: 295 PDDNTYFSLIEGIASVDKAAESSN 318
P+ +Y L++G + K E+ N
Sbjct: 422 PNVYSYTILVDGFCKLGKIDEAYN 445
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 191 bits (486), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 163/300 (54%), Gaps = 7/300 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G++ D+ TY + +SG+ GR +A+R+L M + + P + + LID + +GN
Sbjct: 210 MEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 269
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A + EM+++ ++P TYN LI+ + + +A M M KG PD +TYN
Sbjct: 270 LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 329
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+C+ + L EM ++G+ TY +LI + ++ A ++F + G
Sbjct: 330 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCG 389
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDIV +N L+D C NG IE+A +++++ + ++ D +TYN ++ G CR K++EA
Sbjct: 390 VSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAW 449
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L + R+G+KPD I+ Y +I GLC+ A++L R M G P + Y
Sbjct: 450 CLFRSLTRKGVKPDAIA-------YITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 502
Score = 191 bits (486), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 169/336 (50%), Gaps = 28/336 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +P T GS ++G C+ R +EA +++ M G VP V YNT+I+G C +
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRD 199
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A M K+GI A TYN LI L + +A +L++M ++ I P+ I +
Sbjct: 200 LNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + GN +A +L+ EMI + + P + TY SLI + +A +F+ ++KG
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PD+V +N LI G C + +E L EM + D TYNTL+HG C+ GK+ A+
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQ 379
Query: 241 RLLDQMKRRGIKPDHISFNPTR----------------------------LTYNALIQGL 272
++ ++M G+ PD +++N +TYN +IQGL
Sbjct: 380 KVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGL 439
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
C+ + A L R + KG+ PD Y ++I G+
Sbjct: 440 CRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLC 475
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 165/309 (53%), Gaps = 7/309 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M++ G+ D Y++ + C+ RL A +L +M + G P+ VT +L++G+C
Sbjct: 105 MENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNR 164
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A S D M G +P YN +I+ L R + A ++ M +KGI D++TYN
Sbjct: 165 FQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNT 224
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G G A L +M+ + I P ++ +T+LI K+ ++EA L++ + +
Sbjct: 225 LISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRS 284
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++P++ +N+LI+G C +G + A + M PD VTYNTL+ G C+ +VE+
Sbjct: 285 VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGM 344
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L +M +G+ D TYN LI G C+ + ++A+++ MV G++PD TY
Sbjct: 345 KLFCEMTYQGLVGD-------AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTY 397
Query: 301 FSLIEGIAS 309
L++ + +
Sbjct: 398 NILLDCLCN 406
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 140/275 (50%), Gaps = 1/275 (0%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + P+ + + + KEG L EA + ++M +VP TYN+LI+G+C G
Sbjct: 245 MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGC 304
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A D MV +G P TYN LI +++ + + EM +G+V D+ TYN
Sbjct: 305 LGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+GYC+ G A + + M+ G+ P ++TY L+ L ++ +A + E+
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE 424
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
M DI+ +N +I G C ++ A+ L + + R V PD + Y T++ G CR+G EA
Sbjct: 425 MDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREAD 484
Query: 241 RLLDQMKRRGIKPDHISFNPT-RLTYNALIQGLCK 274
+L +MK G P ++ T R Y +L L K
Sbjct: 485 KLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIK 519
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 154/312 (49%), Gaps = 8/312 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
++SR + P + ++ + K + + + +M+ G+ ++ LI +C
Sbjct: 71 LQSRPI-PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSR 129
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L +A + +M+K G P+ T L++ + EA ++ M G VP+ + YN
Sbjct: 130 LSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNT 189
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+ING C+ + A + M KGI+ +TY +LI LS R +A +L + + +
Sbjct: 190 VINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK 249
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+++ F ALID GN+ A +L KEM R V P+ TYN+L++G C G + +A+
Sbjct: 250 IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAK 309
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ D M +G PD + TYN LI G CK++ + +L EM +G+ D TY
Sbjct: 310 YMFDLMVSKGCFPDVV-------TYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTY 362
Query: 301 FSLIEGIASVDK 312
+LI G K
Sbjct: 363 NTLIHGYCQAGK 374
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 28/273 (10%)
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
AFS EM++ +P+ + ++ + K + +M GI D ++ ILI+
Sbjct: 63 AFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIH 122
Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
+CRC A +L +M+ G +P+++T SL+ + NR EA L ++ G +P
Sbjct: 123 CFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVP 182
Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
++V++N +I+G C N ++ A + M++ + D VTYNTL+ G G+ +A RLL
Sbjct: 183 NVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLL 242
Query: 244 DQMKRRGIKPDHISFN----------------------------PTRLTYNALIQGLCKN 275
M +R I P+ I F P TYN+LI G C +
Sbjct: 243 RDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIH 302
Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
A+ + MVSKG PD TY +LI G
Sbjct: 303 GCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFC 335
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 7/190 (3%)
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
C AFSL EM+ P+++ +T ++ V++K N+ L+ G+ D+
Sbjct: 57 CIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYS 116
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
F LI C + A +LL +M ++ P VT +L++G C+ + +EA L+D M
Sbjct: 117 FTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM- 175
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
D F P + YN +I GLCKN++ + A E+ M KGI D TY +LI G+
Sbjct: 176 ------DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGL 229
Query: 308 ASVDKAAESS 317
++ + +++
Sbjct: 230 SNSGRWTDAA 239
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 7/224 (3%)
Query: 95 KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154
K +A + EM + +P + + ++ + L+ +M + GI + ++T
Sbjct: 59 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118
Query: 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
LI + +R+ A L + G P IV +L++G C + A SL+ MD
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178
Query: 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274
P+ V YNT+++G C+ + A + M+++GI+ D + TYN LI GL
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAV-------TYNTLISGLSN 231
Query: 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
+ A LLR+MV + I P+ + +LI+ E+ N
Sbjct: 232 SGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARN 275
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 158/291 (54%), Gaps = 7/291 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ + P+ YT +SG C+ G+L++ +L+ M+ G T V+YNTLI G+C KG
Sbjct: 229 MRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGL 288
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A ++ M K G+ P T+N LIH K+ EA + EM + P+++TYN
Sbjct: 289 LSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNT 348
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LINGY + G+ + AF +++M+ GIQ +LTY +LIF L KQ + +A Q + +
Sbjct: 349 LINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKEN 408
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++P+ F+ALI G C N +R F L K M R HP+E T+N L+ CR + A
Sbjct: 409 LVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGAS 468
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291
++L +M RR I D T + + GL + L ++LL+EM K
Sbjct: 469 QVLREMVRRSIPLDS-------RTVHQVCNGLKHQGKDQLVKKLLQEMEGK 512
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 147/311 (47%), Gaps = 28/311 (9%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
+ A+ QMK+ G +PT + N + +G +++A F EM + I P T N
Sbjct: 183 KFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLN 242
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
+++ K+ + ++L++M G ++YN LI G+C G A L + M
Sbjct: 243 MVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKS 302
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
G+QP ++T+ +LI + ++ EA ++F A + P+ V +N LI+G+ G+ E A
Sbjct: 303 GLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMA 362
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------ 258
F ++M + D +TYN L+ G C+Q K +A + + ++ + + P+ +F
Sbjct: 363 FRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMG 422
Query: 259 ----------------------NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
+P T+N L+ C+N++ D A ++LREMV + I D
Sbjct: 423 QCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLD 482
Query: 297 DNTYFSLIEGI 307
T + G+
Sbjct: 483 SRTVHQVCNGL 493
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 127/259 (49%), Gaps = 37/259 (14%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G+QP+ T+ + + G C+ +L+EAS++ +MK + P VTYNTLI+GY +G+
Sbjct: 299 MGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGD 358
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
EMAF F ++MV GI TYN LI L + K +A +KE+ ++ +VP+S T++
Sbjct: 359 HEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSA 418
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G C NA + F L+ MI G P T
Sbjct: 419 LIMGQCVRKNADRGFELYKSMIRSGCHPNEQT---------------------------- 450
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
FN L+ C N + + A +L+EM R + D T + + +G QGK + +
Sbjct: 451 -------FNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVK 503
Query: 241 RLLDQMKRRGIKPDHISFN 259
+LL +M+ G K SFN
Sbjct: 504 KLLQEME--GKKFLQESFN 520
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 45/249 (18%)
Query: 70 EMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129
+M G +PT + N + LL + ++ A +EM I P+ T N++++GYCR G
Sbjct: 193 QMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSG 252
Query: 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189
K L +M G + T ++Y N
Sbjct: 253 KLDKGIELLQDMERLGFRATDVSY-----------------------------------N 277
Query: 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249
LI GHC G + A L M + + P+ VT+NTL+HG CR K++EA ++ +MK
Sbjct: 278 TLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV 337
Query: 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI-- 307
+ P+ + TYN LI G + + ++A +MV GI D TY +LI G+
Sbjct: 338 NVAPNTV-------TYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCK 390
Query: 308 -ASVDKAAE 315
A KAA+
Sbjct: 391 QAKTRKAAQ 399
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 32/240 (13%)
Query: 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNILINGYCRCGNAKKAFSLHD 139
T+ +++H L RK A+ +L+++ G V P + ++ L+ Y C + + F
Sbjct: 117 THAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKV-FDALLYSYRECDSTPRVFD--- 172
Query: 140 EMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199
SL + + A F G LP + NA + G
Sbjct: 173 ---------------SLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQG 217
Query: 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259
++ A +EM R K+ P+ T N +M G CR GK+++ LL M+R G F
Sbjct: 218 RVDIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLG-------FR 270
Query: 260 PTRLTYNALIQGLCKNQEGDLAEEL-LREMVSK-GITPDDNTYFSLIEGIASVDKAAESS 317
T ++YN LI G C ++G L+ L L+ M+ K G+ P+ T+ +LI G K E+S
Sbjct: 271 ATDVSYNTLIAGHC--EKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEAS 328
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 167/316 (52%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M SRG++PD +TY + + GMCKEG ++ A M+ ++ G P ++YN L+ N+G
Sbjct: 254 MLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
E +M + P TY++LI L + K+ EA ++LK M EKG+ PD+ +Y+
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI +CR G A + MI G P ++ Y +++ L K + +A ++F G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P+ +N + ++G+ RA ++ EM + PDE+TYN+++ CR+G V+EA
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
LL M+ F+P+ +TYN ++ G CK + A +L MV G P++ TY
Sbjct: 494 ELLVDMR-------SCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546
Query: 301 FSLIEGIASVDKAAES 316
LIEGI AE+
Sbjct: 547 TVLIEGIGFAGYRAEA 562
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 167/303 (55%), Gaps = 7/303 (2%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
QPD + Y + ++G CK R+++A+R+L++M+ P VTYN +I C++G L++A
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
++++ PT TY +LI ++E + EA ++ EM +G+ PD TYN +I G C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
+ G +AF + + KG +P +++Y L+ L Q + E ++L ++ P++V
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334
Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
++ LI C +G IE A +LLK M + PD +Y+ L+ CR+G+++ A L+ M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394
Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
G PD ++ YN ++ LCKN + D A E+ ++ G +P+ ++Y ++
Sbjct: 395 ISDGCLPDIVN-------YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 447
Query: 307 IAS 309
+ S
Sbjct: 448 LWS 450
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 8/288 (2%)
Query: 21 CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80
C+ G E+ +LE M G P + LI G+ N+ A + + K G P
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158
Query: 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
YN LI+ ++ +A +L M K PD++TYNI+I C G A + ++
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218
Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
++ QPT++TYT LI + + EA +L + L++G+ PD+ +N +I G C G
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGM 278
Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
++RAF +++ ++ PD ++YN L+ QGK EE +L+ +M P+ +
Sbjct: 279 VDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV---- 334
Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
TY+ LI LC++ + + A LL+ M KG+TPD +Y LI
Sbjct: 335 ---TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC 379
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 130/248 (52%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S P+ TY ++ +C++G++EEA +L+ MKE GL P A +Y+ LI +C +G
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L++A F + M+ G +P YN ++ L K +A ++ ++GE G P+S +YN
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+ + G+ +A + EM+ GI P +TY S+I L ++ + EA +L + +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P +V +N ++ G C IE A ++L+ M P+E TY L+ G G EA
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563
Query: 241 RLLDQMKR 248
L + + R
Sbjct: 564 ELANDLVR 571
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 109/214 (50%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK +G+ PD+Y+Y ++ C+EGRL+ A LE M +G +P V YNT++ C G
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGK 418
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A ++ + G P +S+YN + L + A M+ EM GI PD ITYN
Sbjct: 419 ADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNS 478
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I+ CR G +AF L +M P+++TY ++ K +R+ +A + E+ + G
Sbjct: 479 MISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNG 538
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214
P+ + LI+G G A L ++ R+
Sbjct: 539 CRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156
+E+ +L+ M KG PD I LI G+ N KA + E++ K QP + Y +L
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNAL 164
Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
I K NR+ +A ++ + +K PD V +N +I C+ G ++ A +L ++
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224
Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
P +TY L+ +G V+EA +L+D+M RG+KPD TYN +I+G+CK
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM-------FTYNTIIRGMCKEG 277
Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315
D A E++R + KG PD +Y L+ + + K E
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEE 316
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255
C +GN + LL+ M R +PD + L+ G + +A R+++ +++ G
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG----- 154
Query: 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
P YNALI G CK D A +L M SK +PD TY +I + S K
Sbjct: 155 ---QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 174/370 (47%), Gaps = 64/370 (17%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK RG+ PD+ TY S + G K GRL++ E+MK+ P +TYN LI+ +C G
Sbjct: 288 MKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 347
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L + F EM G+ P +Y+ L+ E M +A +M G+VP+ TY
Sbjct: 348 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 407
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ C+ GN AF L +EM+ G++ ++TYT+LI L RM EA++LF G
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++P++ +NALI G N++RA LL E+ + PD + Y T + G C K+E A+
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAK 527
Query: 241 RLLDQMKRRGIKPDHISF-----------NPTR-----------------LTYNALIQGL 272
++++MK GIK + + + NPT +T+ LI GL
Sbjct: 528 VVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587
Query: 273 CKNQ------------------------------------EGDLAEELLREMVSKGITPD 296
CKN+ + + A L +MV KG+ PD
Sbjct: 588 CKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647
Query: 297 DNTYFSLIEG 306
Y SL++G
Sbjct: 648 RTAYTSLMDG 657
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 7/312 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK V P + + + K G+ ++ R + M G PT TYN +ID C +G+
Sbjct: 218 MKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD 277
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A +EM +G++P TYN +I ++ + +EM + PD ITYN
Sbjct: 278 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNA 337
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LIN +C+ G + EM G++P +++Y++L+ K+ M +A + + + G
Sbjct: 338 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
++P+ + +LID +C GN+ AF L EM ++ V + VTY L+ G C +++EA
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 457
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +M G+ P+ S YNALI G K + D A ELL E+ +GI PD Y
Sbjct: 458 ELFGKMDTAGVIPNLAS-------YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLY 510
Query: 301 FSLIEGIASVDK 312
+ I G+ S++K
Sbjct: 511 GTFIWGLCSLEK 522
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 158/319 (49%), Gaps = 11/319 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M GV+ + TY + + G+C R++EA + +M G++P +YN LI G+ N
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A +E+ +GI P Y I L K+ A ++ EM E GI +S+ Y
Sbjct: 488 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTT 547
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK- 179
L++ Y + GN + L DEM I+ T++T+ LI L K + +A F
Sbjct: 548 LMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDF 607
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
G+ + +F A+IDG C + +E A +L ++M + + PD Y +LM G +QG V EA
Sbjct: 608 GLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEA 667
Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
L D+M G+K D L Y +L+ GL + A L EM+ +GI PD+
Sbjct: 668 LALRDKMAEIGMKLD-------LLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVL 720
Query: 300 YFSLIEG---IASVDKAAE 315
S+++ + +D+A E
Sbjct: 721 CISVLKKHYELGCIDEAVE 739
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 159/314 (50%), Gaps = 10/314 (3%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
P + + S + G LEEA + +MK + P + N L+ + G + F
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
+M+ G PT TYN++I + E + A + +EM +G+VPD++TYN +I+G+ +
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
G +EM +P ++TY +LI K ++ + + G+ P++V
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
++ L+D C G +++A +M R+ + P+E TY +L+ C+ G + +A RL ++M
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 429
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
+ G++ + + TY ALI GLC + AEEL +M + G+ P+ +Y +LI G
Sbjct: 430 QVGVEWNVV-------TYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGF 482
Query: 308 A---SVDKAAESSN 318
++D+A E N
Sbjct: 483 VKAKNMDRALELLN 496
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 127/243 (52%), Gaps = 1/243 (0%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+K RG++PD YG+F+ G+C ++E A ++ +MKE G+ ++ Y TL+D Y GN
Sbjct: 498 LKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 557
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMG-EKGIVPDSITYN 119
DEM + I T T+ +LI L + + +A D + + G+ ++ +
Sbjct: 558 PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFT 617
Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
+I+G C+ + A +L ++M+ KG+ P YTSL+ KQ ++EA L +
Sbjct: 618 AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEI 677
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
GM D++ + +L+ G +++A S L+EM +HPDEV +++ G ++EA
Sbjct: 678 GMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEA 737
Query: 240 RRL 242
L
Sbjct: 738 VEL 740
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 162/303 (53%), Gaps = 17/303 (5%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
RG D +Y + +SG C + +L+EA L++M + GL P TY+ LI G N +E
Sbjct: 547 RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEE 606
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
A F D+ + G++P TY+++I + E + EM K + P+++ YN LI
Sbjct: 607 AIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIR 666
Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
YCR G A L ++M HKGI P TYTSLI +S +R+ EA LFE +G+ P
Sbjct: 667 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 726
Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243
++ + ALIDG+ G + + LL+EM VHP+++TY ++ G R G V EA RLL
Sbjct: 727 NVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLL 786
Query: 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303
++M+ +GI PD I TY I G K +G + E KG D+ Y ++
Sbjct: 787 NEMREKGIVPDSI-------TYKEFIYGYLK--QGGVLEAF------KG--SDEENYAAI 829
Query: 304 IEG 306
IEG
Sbjct: 830 IEG 832
Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 181/348 (52%), Gaps = 42/348 (12%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
+GV PD Y + + ++ CK G++EEA ++ +M+E G+ P VT+NT+IDG G +
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 326
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
AF F+++MV++G+ PT TY++L+ L +++ +A +LKEM +KG P+ I YN LI+
Sbjct: 327 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 386
Query: 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG--- 180
+ G+ KA + D M+ KG+ T TY +LI K + A++L + L+ G
Sbjct: 387 SFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNV 446
Query: 181 ----------MLPDIVMFNA----------------------LIDGHCTNGNIERAFSLL 208
+L +MF++ LI G C +G +A L
Sbjct: 447 NQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELW 506
Query: 209 KEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
+ D T N L+HG C GK++EA R+ ++ RG D R++YN L
Sbjct: 507 FQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD-------RVSYNTL 559
Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
I G C ++ D A L EMV +G+ PD+ TY LI G+ +++K E+
Sbjct: 560 ISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEA 607
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 161/380 (42%), Gaps = 63/380 (16%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-------------------- 40
M S+G+ S TY + + G CK G+ + A R+L++M G
Sbjct: 404 MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLM 463
Query: 41 ---------------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85
+ P TLI G C G A + + +G + T N
Sbjct: 464 FDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNA 523
Query: 86 LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
L+H L K+ EA + KE+ +G V D ++YN LI+G C +AF DEM+ +G
Sbjct: 524 LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRG 583
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
++P TY+ LI L N++ EA Q +++ GMLPD+ ++ +IDG C E
Sbjct: 584 LKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQ 643
Query: 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN------ 259
EM V P+ V YN L+ CR G++ A L + MK +GI P+ ++
Sbjct: 644 EFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 703
Query: 260 ----------------------PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
P Y ALI G K + E LLREM SK + P+
Sbjct: 704 SIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNK 763
Query: 298 NTYFSLIEGIASVDKAAESS 317
TY +I G A E+S
Sbjct: 764 ITYTVMIGGYARDGNVTEAS 783
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 130/245 (53%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG++PD+YTY + G+ ++EEA + + K NG++P TY+ +IDG C
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 638
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
E F DEM+ + + P YN LI ++ A ++ ++M KGI P+S TY
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 698
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G ++A L +EM +G++P + YT+LI K +M++ + L +K
Sbjct: 699 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 758
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+ + + +I G+ +GN+ A LL EM + PD +TY ++G +QG V EA
Sbjct: 759 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 818
Query: 241 RLLDQ 245
+ D+
Sbjct: 819 KGSDE 823
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 140/281 (49%), Gaps = 8/281 (2%)
Query: 36 MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95
+ G+ P+ T N L+ + D +V +G+ P + I+ K
Sbjct: 230 LANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAINAFCKGGK 288
Query: 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155
+ EA + +M E G+ P+ +T+N +I+G CG +AF ++M+ +G++PT++TY+
Sbjct: 289 VEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSI 348
Query: 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215
L+ L++ R+ +A + + KG P+++++N LID G++ +A + M
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKG 408
Query: 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275
+ TYNTL+ G C+ G+ + A RLL +M I FN + ++ ++I LC +
Sbjct: 409 LSLTSSTYNTLIKGYCKNGQADNAERLLKEML-------SIGFNVNQGSFTSVICLLCSH 461
Query: 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
D A + EM+ + ++P +LI G+ K +++
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 502
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 29/234 (12%)
Query: 99 ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158
A D+ + KG+ P T NIL+ R +K D ++ KG+ P + +T+ I
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD-VVCKGVSPDVYLFTTAIN 281
Query: 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218
K ++ EA +LF G+ P++V FN +IDG G + AF ++M + P
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 341
Query: 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP------------------ 260
+TY+ L+ G R ++ +A +L +M ++G P+ I +N
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 401
Query: 261 ----------TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
T TYN LI+G CKN + D AE LL+EM+S G + ++ S+I
Sbjct: 402 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 455
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 146/258 (56%), Gaps = 1/258 (0%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV-PTAVTYNTLIDGYCNKG 59
M G +PD TY + + G CK L +AS M + +K + P VTY ++I GYC G
Sbjct: 232 MSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAG 291
Query: 60 NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
+ A S D+M++ GI PT T+N+L+ +M+ A+++ +M G PD +T+
Sbjct: 292 KMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFT 351
Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
LI+GYCR G + F L +EM +G+ P TY+ LI L +NR+++A +L +K
Sbjct: 352 SLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK 411
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
++P M+N +IDG C G + A +++EM++ K PD++T+ L+ G C +G++ EA
Sbjct: 412 DIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEA 471
Query: 240 RRLLDQMKRRGIKPDHIS 257
+ +M G PD I+
Sbjct: 472 VSIFHKMVAIGCSPDKIT 489
Score = 167 bits (423), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 164/340 (48%), Gaps = 41/340 (12%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQ--------MKENGLVPTAV------ 46
MKS GV P++ G VS ++G+L A+ +L Q M N L+ T V
Sbjct: 129 MKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVE 188
Query: 47 -------------------TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87
T+N LI G C G E A M G P TYN LI
Sbjct: 189 DAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLI 248
Query: 88 HELLMERKMVEADDMLKEMGEKGIV-PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
++ +A +M K++ + PD +TY +I+GYC+ G ++A SL D+M+ GI
Sbjct: 249 QGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGI 308
Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
PT +T+ L+ +K M+ A+++ ++ G PD+V F +LIDG+C G + + F
Sbjct: 309 YPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFR 368
Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
L +EM+ + P+ TY+ L++ C + ++ +AR LL Q+ + I P +NP
Sbjct: 369 LWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNP------ 422
Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
+I G CK + + A ++ EM K PD T+ LI G
Sbjct: 423 -VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIG 461
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 125/244 (51%), Gaps = 1/244 (0%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
PD TY S +SG CK G++ EAS +L+ M G+ PT VT+N L+DGY G + A
Sbjct: 274 SPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEE 333
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
R +M+ G P T+ LI ++ + + +EM +G+ P++ TY+ILIN C
Sbjct: 334 IRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALC 393
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
KA L ++ K I P Y +I K ++ EA+ + E K PD +
Sbjct: 394 NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKI 453
Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
F LI GHC G + A S+ +M + PD++T ++L+ + G +EA L+Q+
Sbjct: 454 TFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQI 512
Query: 247 KRRG 250
R+G
Sbjct: 513 ARKG 516
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 152/341 (44%), Gaps = 41/341 (12%)
Query: 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF----- 65
+TY +CK G + A +M E MK +G+ P L+ + KG L A
Sbjct: 104 WTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ 163
Query: 66 SFRDE---MVKQGIMPT-------------------------ASTYNLLIHELLMERKMV 97
SF E MV ++ T T+N+LI L K
Sbjct: 164 SFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAE 223
Query: 98 EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSL 156
+A ++L M G PD +TYN LI G+C+ KA + ++ + P ++TYTS+
Sbjct: 224 KALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSM 283
Query: 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216
I K +M EA L ++ L G+ P V FN L+DG+ G + A + +M
Sbjct: 284 ISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGC 343
Query: 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ 276
PD VT+ +L+ G CR G+V + RL ++M RG+ P+ TY+ LI LC
Sbjct: 344 FPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPN-------AFTYSILINALCNEN 396
Query: 277 EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
A ELL ++ SK I P Y +I+G K E++
Sbjct: 397 RLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAN 437
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 90/172 (52%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S G PD T+ S + G C+ G++ + R+ E+M G+ P A TY+ LI+ CN+
Sbjct: 338 MISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENR 397
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A ++ + I+P YN +I K+ EA+ +++EM +K PD IT+ I
Sbjct: 398 LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTI 457
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172
LI G+C G +A S+ +M+ G P +T +SL+ L K EA L
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 41/207 (19%)
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL-------------- 191
I+ + TY L L K A Q+FE + G+ P+ + L
Sbjct: 99 IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFAT 158
Query: 192 --------IDGHCTNGN-----------IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232
++G C N +E A L E R + D T+N L+ G C
Sbjct: 159 ALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCG 218
Query: 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292
GK E+A LL M G +PD + TYN LIQG CK+ E + A E+ +++ S
Sbjct: 219 VGKAEKALELLGVMSGFGCEPDIV-------TYNTLIQGFCKSNELNKASEMFKDVKSGS 271
Query: 293 I-TPDDNTYFSLIEGIASVDKAAESSN 318
+ +PD TY S+I G K E+S+
Sbjct: 272 VCSPDVVTYTSMISGYCKAGKMREASS 298
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 170/312 (54%), Gaps = 11/312 (3%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G+ P T+ + ++G+C EGR+ EA+ ++ +M GL VTY T+++G C G+ + A
Sbjct: 221 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 280
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
+ +M + I P Y+ +I L + +A + EM EKGI P+ TYN +I+G
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
+C G A L +MI + I P +LT+ +LI K+ ++ EA++L + L + + PD
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
V +N++I G C + + A K M + PD VT+NT++ CR +V+E +LL
Sbjct: 401 TVTYNSMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 456
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
++ RRG+ N T TYN LI G C+ + A++L +EM+S G+ PD T L+
Sbjct: 457 EISRRGLVA-----NTT--TYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILL 509
Query: 305 EGIASVDKAAES 316
G +K E+
Sbjct: 510 YGFCENEKLEEA 521
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 165/336 (49%), Gaps = 32/336 (9%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G+ D TYG+ V+GMCK G + A +L +M+E + P V Y+ +ID C G+
Sbjct: 252 MVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGH 311
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A EM+++GI P TYN +I + +A +L++M E+ I PD +T+N
Sbjct: 312 HSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 371
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + G +A L DEM+H+ I P +TY S+I+ K NR +A +F+ +
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 429
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
PD+V FN +ID +C ++ LL+E+ R + + TYNTL+HG C + A+
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQ 487
Query: 241 RLLDQMKRRGIKPDHISFNPT----------------------------RLTYNALIQGL 272
L +M G+ PD I+ N + YN +I G+
Sbjct: 488 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 547
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
CK + D A +L + G+ PD TY +I G
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 168/331 (50%), Gaps = 44/331 (13%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G QPD T+ + + G+C E R+ EA + M E G + A
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE--------------------A 210
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
+ D+MV+ G+ P T+N LI+ L +E +++EA ++ +M KG+ D +TY ++NG
Sbjct: 211 VALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
C+ G+ K A +L +M I+P ++ Y+++I L K +A LF L KG+ P+
Sbjct: 271 MCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 330
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
+ +N +IDG C+ G A LL++M +++PD +T+N L+ ++GK+ EA +L D
Sbjct: 331 VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCD 390
Query: 245 QMKRRGIKPDHISFN------------------------PTRLTYNALIQGLCKNQEGDL 280
+M R I PD +++N P +T+N +I C+ + D
Sbjct: 391 EMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDE 450
Query: 281 AEELLREMVSKGITPDDNTYFSLIEGIASVD 311
+LLRE+ +G+ + TY +LI G VD
Sbjct: 451 GMQLLREISRRGLVANTTTYNTLIHGFCEVD 481
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 164/349 (46%), Gaps = 41/349 (11%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ ++PD Y + + +CK+G +A + +M E G+ P TYN +IDG+C+ G
Sbjct: 287 MEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGR 346
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A +M+++ I P T+N LI + E K+ EA+ + EM + I PD++TYN
Sbjct: 347 WSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNS 406
Query: 121 LINGYC---RCGNAKKAFSLHD----------------------------EMIHKGIQPT 149
+I G+C R +AK F L E+ +G+
Sbjct: 407 MIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVAN 466
Query: 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209
TY +LI + + + A LF+ ++ G+ PD + N L+ G C N +E A L +
Sbjct: 467 TTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE 526
Query: 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
+ K+ D V YN ++HG C+ KV+EA L + G++PD TYN +I
Sbjct: 527 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD-------VQTYNVMI 579
Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI---ASVDKAAE 315
G C A L +M G PD++TY +LI G +DK+ E
Sbjct: 580 SGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIE 628
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 150/299 (50%), Gaps = 11/299 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + PD T+ + +S KEG+L EA ++ ++M + P VTYN++I G+C
Sbjct: 357 MIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 416
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A D M P T+N +I +++ E +L+E+ +G+V ++ TYN
Sbjct: 417 FDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G+C N A L EMI G+ P +T L++ + ++ EA +LFE
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ D V +N +I G C ++ A+ L + V PD TYN ++ G C + + +A
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 592
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
L +MK G +PD+ TYN LI+G K E D + EL+ EM S G + D T
Sbjct: 593 VLFHKMKDNGHEPDNS-------TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644
Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 136/272 (50%), Gaps = 22/272 (8%)
Query: 60 NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
+L+ A F D MV+ TA N +I + + A + ++M + I + ++N
Sbjct: 86 SLDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFN 145
Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM------------- 166
ILI +C C + S ++ G QP ++T+ +L+ L ++R+
Sbjct: 146 ILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET 205
Query: 167 --IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224
+EA LF+ + G+ P ++ FN LI+G C G + A +L+ +M +H D VTY
Sbjct: 206 GFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265
Query: 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284
T+++G C+ G + A LL +M+ IKPD + Y+A+I LCK+ A+ L
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVV-------IYSAIIDRLCKDGHHSDAQYL 318
Query: 285 LREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
EM+ KGI P+ TY +I+G S + +++
Sbjct: 319 FSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDA 350
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 36/235 (15%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
PD T+ + + C+ R++E ++L ++ GLV TYNTLI G+C NL A
Sbjct: 429 SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488
Query: 67 FRDEMVKQGIMPTAST-----------------------------------YNLLIHELL 91
EM+ G+ P T YN++IH +
Sbjct: 489 LFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMC 548
Query: 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151
K+ EA D+ + G+ PD TYN++I+G+C A L +M G +P
Sbjct: 549 KGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNS 608
Query: 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
TY +LI K + ++ +L + G D + D T+G ++++FS
Sbjct: 609 TYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGRLDKSFS 662
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 8/193 (4%)
Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
A D M+ T + +I V + NR A L+ + + +I FN LI
Sbjct: 90 AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIK 149
Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI-- 251
C + + S ++ ++ PD VT+NTL+HG C + ++ EA L M G
Sbjct: 150 CFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLE 209
Query: 252 ------KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
+ I P +T+N LI GLC A L+ +MV KG+ D TY +++
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269
Query: 306 GIASVDKAAESSN 318
G+ + + N
Sbjct: 270 GMCKMGDTKSALN 282
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
GV+PD TY +SG C + + +A+ + +MK+NG P TYNTLI G G ++
Sbjct: 566 HGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625
Query: 64 AFSFRDEMVKQGIMPTASTYNLL 86
+ EM G A T ++
Sbjct: 626 SIELISEMRSNGFSGDAFTIKMV 648
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK G +PD+ TY + + G K G ++++ ++ +M+ NG A T + D G
Sbjct: 598 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-LITDGR 656
Query: 61 LEMAFS 66
L+ +FS
Sbjct: 657 LDKSFS 662
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 187 bits (476), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 165/304 (54%), Gaps = 7/304 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R + PD T+ ++ +C EG E++S ++++M+++G PT VTYNT++ YC KG
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A D M +G+ TYN+LIH+L ++ + +L++M ++ I P+ +TYN
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 303
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING+ G A L +EM+ G+ P +T+ +LI + EA ++F AKG
Sbjct: 304 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKG 363
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P V + L+DG C N + A M R V +TY ++ G C+ G ++EA
Sbjct: 364 LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAV 423
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
LL++M + GI PD + TY+ALI G CK A+E++ + G++P+ Y
Sbjct: 424 VLLNEMSKDGIDPDIV-------TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 476
Query: 301 FSLI 304
+LI
Sbjct: 477 STLI 480
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 155/308 (50%), Gaps = 7/308 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G P YT + + + K G L++M + + P T+N LI+ C +G+ E +
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
+M K G PT TYN ++H + + A ++L M KG+ D TYN+LI+
Sbjct: 213 SYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
CR K + L +M + I P +TY +LI S + +++ A QL L+ G+ P+
Sbjct: 273 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPN 332
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
V FNALIDGH + GN + A + M+ + P EV+Y L+ G C+ + + AR
Sbjct: 333 HVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYM 392
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
+MKR G+ R+TY +I GLCKN D A LL EM GI PD TY +LI
Sbjct: 393 RMKRNGVCVG-------RITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI 445
Query: 305 EGIASVDK 312
G V +
Sbjct: 446 NGFCKVGR 453
Score = 181 bits (458), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 6/318 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G+ PD TY + ++G CK GR + A ++ ++ GL P + Y+TLI C G
Sbjct: 429 MSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 488
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A + M+ +G T+N+L+ L K+ EA++ ++ M GI+P++++++
Sbjct: 489 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 548
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LINGY G KAFS+ DEM G PT TY SL+ L K + EA++ ++ A
Sbjct: 549 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVP 608
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
D VM+N L+ C +GN+ +A SL EM + + PD TY +L+ G CR+GK A
Sbjct: 609 AAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI 668
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ + RG + P ++ Y + G+ K + +M + G TPD T
Sbjct: 669 LFAKEAEARG------NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTT 722
Query: 301 FSLIEGIASVDKAAESSN 318
++I+G + + K ++++
Sbjct: 723 NAMIDGYSRMGKIEKTND 740
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 156/308 (50%), Gaps = 7/308 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+++G+ P +YG + G+CK + A +MK NG+ +TY +IDG C G
Sbjct: 359 MEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGF 418
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A +EM K GI P TY+ LI+ + A +++ + G+ P+ I Y+
Sbjct: 419 LDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYST 478
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI CR G K+A +++ MI +G T+ L+ L K ++ EA++ + G
Sbjct: 479 LIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+LP+ V F+ LI+G+ +G +AFS+ EM ++ HP TY +L+ G C+ G + EA
Sbjct: 539 ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAE 598
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+ L + D + YN L+ +CK+ A L EMV + I PD TY
Sbjct: 599 KFLKSLHAVPAAVDTV-------MYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 651
Query: 301 FSLIEGIA 308
SLI G+
Sbjct: 652 TSLISGLC 659
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 7/306 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MKS+GV D TY + +C+ R+ + +L M++ + P VTYNTLI+G+ N+G
Sbjct: 254 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 313
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ +A +EM+ G+ P T+N LI + E EA M M KG+ P ++Y +
Sbjct: 314 VLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 373
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++G C+ A + M G+ +TYT +I L K + EA L G
Sbjct: 374 LLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDG 433
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDIV ++ALI+G C G + A ++ + R+ + P+ + Y+TL++ CR G ++EA
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 493
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
R+ + M G DH T+N L+ LCK + AEE +R M S GI P+ ++
Sbjct: 494 RIYEAMILEGHTRDH-------FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 546
Query: 301 FSLIEG 306
LI G
Sbjct: 547 DCLING 552
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 8/318 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKG 59
M R + PDSYTY S +SG+C++G+ A ++ + G ++P V Y +DG G
Sbjct: 639 MVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAG 698
Query: 60 NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
+ FR++M G P T N +I K+ + +D+L EMG + P+ TYN
Sbjct: 699 QWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYN 758
Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
IL++GY + + +F L+ +I GI P LT SL+ + + N + ++ + F+ +
Sbjct: 759 ILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICR 818
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
G+ D FN LI C NG I AF L+K M + + D+ T + ++ R + +E+
Sbjct: 819 GVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQES 878
Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
R +L +M ++GI P+ Y LI GLC+ + A + EM++ I P +
Sbjct: 879 RMVLHEMSKQGISPE-------SRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVA 931
Query: 300 YFSLIEGIASVDKAAESS 317
+++ +A KA E++
Sbjct: 932 ESAMVRALAKCGKADEAT 949
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 8/290 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G+ PD T S V G+C+ LE ++L+ G+ T+N LI C G + A
Sbjct: 784 GILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWA 843
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
F M GI T + ++ L + E+ +L EM ++GI P+S Y LING
Sbjct: 844 FDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLING 903
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
CR G+ K AF + +EMI I P + ++++ L+K + EA L L ++P
Sbjct: 904 LCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPT 963
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
I F L+ C NGN+ A L M + D V+YN L+ G C +G + A L +
Sbjct: 964 IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYE 1023
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG-DLAEELLREMVSKGI 293
+MK G F TY ALI+GL + A+ +L++++++G
Sbjct: 1024 EMKGDG-------FLANATTYKALIRGLLARETAFSGADIILKDLLARGF 1066
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 161/388 (41%), Gaps = 78/388 (20%)
Query: 2 KSRG-VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
++RG V P+ Y FV GM K G+ + EQM G P VT N +IDGY G
Sbjct: 675 EARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGK 734
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIH----------ELLMERKMV------------- 97
+E EM Q P +TYN+L+H L+ R ++
Sbjct: 735 IEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHS 794
Query: 98 ------EAD------DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
E++ +LK +G+ D T+N+LI+ C G AF L M G
Sbjct: 795 LVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLG 854
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
I T +++ VL++ +R E+ + +G+ P+ + LI+G C G+I+ AF
Sbjct: 855 ISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAF 914
Query: 206 S-----------------------------------LLKEMDRMKVHPDEVTYNTLMHGR 230
LL+ M +MK+ P ++ TLMH
Sbjct: 915 VVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLC 974
Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
C+ G V EA L M G+K D +S YN LI GLC + LA EL EM
Sbjct: 975 CKNGNVIEALELRVVMSNCGLKLDLVS-------YNVLITGLCAKGDMALAFELYEEMKG 1027
Query: 291 KGITPDDNTYFSLIEGIASVDKAAESSN 318
G + TY +LI G+ + + A ++
Sbjct: 1028 DGFLANATTYKALIRGLLARETAFSGAD 1055
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 7/226 (3%)
Query: 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140
S Y++LI L E + ++ ++ + MG G P T N ++ + G +S E
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183
Query: 141 MIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200
M+ + I P + T+ LI VL + ++ L + G P IV +N ++ +C G
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243
Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
+ A LL M V D TYN L+H CR ++ + LL M++R I P+ +
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV---- 299
Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
TYN LI G + +A +LL EM+S G++P+ T+ +LI+G
Sbjct: 300 ---TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDG 342
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 130/275 (47%), Gaps = 26/275 (9%)
Query: 62 EMAFSFRDEMVKQGIMPTASTYNLLI---HELLMERKMVEADDMLKEM----GEKGIVPD 114
++A F +VKQ + T L+ H L+ R A +LKE+ G+ V
Sbjct: 51 KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFG 110
Query: 115 SI------------TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
++ Y+ILI Y R G + + + M G P++ T +++ + K
Sbjct: 111 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 170
Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
+ + L + + PD+ FN LI+ C G+ E++ L+++M++ P VT
Sbjct: 171 SGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVT 230
Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
YNT++H C++G+ + A LLD MK +G+ D TYN LI LC++
Sbjct: 231 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDAD-------VCTYNMLIHDLCRSNRIAKGY 283
Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
LLR+M + I P++ TY +LI G ++ K +S
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIAS 318
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 3/206 (1%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M S G+ D T + VS + + R +E+ +L +M + G+ P + Y LI+G C G+
Sbjct: 850 MTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGD 909
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ AF ++EM+ I P + ++ L K EA +L+ M + +VP ++
Sbjct: 910 IKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTT 969
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++ C+ GN +A L M + G++ +++Y LI L + M A +L+E G
Sbjct: 970 LMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG 1029
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFS 206
L + + ALI G E AFS
Sbjct: 1030 FLANATTYKALIRGLLAR---ETAFS 1052
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 187 bits (475), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 163/335 (48%), Gaps = 28/335 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +P T+GS V+G C R EA +++Q+ G P V YNT+ID C KG
Sbjct: 140 MMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQ 199
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A M K GI P TYN LI L + +L +M GI PD IT++
Sbjct: 200 VNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSA 259
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ Y + G +A ++EMI + + P ++TY SLI L + EA ++ ++KG
Sbjct: 260 LIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKG 319
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P+ V +N LI+G+C ++ +L M R V D TYNTL G C+ GK A
Sbjct: 320 FFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAE 379
Query: 241 RLLDQMKRRGIKPDHISFNP---------------TRL-------------TYNALIQGL 272
++L +M G+ PD +FN RL TYN +I+GL
Sbjct: 380 KVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGL 439
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
CK + + A L + KG++PD TY +++ G+
Sbjct: 440 CKADKVEDAWYLFCSLALKGVSPDVITYITMMIGL 474
Score = 181 bits (458), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 170/312 (54%), Gaps = 7/312 (2%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G+ D Y++ + + C+ RL A L +M + G P+ VT+ +L++G+C+ A
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
S D++V G P YN +I L + ++ A D+LK M + GI PD +TYN LI
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITR 228
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
G + + +M+ GI P ++T+++LI V K+ +++EA + + + + + P+
Sbjct: 229 LFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPN 288
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244
IV +N+LI+G C +G ++ A +L + P+ VTYNTL++G C+ +V++ ++L
Sbjct: 289 IVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILC 348
Query: 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLI 304
M R G+ D TYN L QG C+ + AE++L MVS G+ PD T+ L+
Sbjct: 349 VMSRDGVDGD-------TFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILL 401
Query: 305 EGIASVDKAAES 316
+G+ K ++
Sbjct: 402 DGLCDHGKIGKA 413
Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 148/288 (51%), Gaps = 7/288 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK G++PD TY S ++ + G ++R+L M G+ P +T++ LID Y +G
Sbjct: 210 MKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQ 269
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L A +EM+++ + P TYN LI+ L + + EA +L + KG P+++TYN
Sbjct: 270 LLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNT 329
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LINGYC+ + M G+ TY +L + + A+++ ++ G
Sbjct: 330 LINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCG 389
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+ FN L+DG C +G I +A L+++ + K +TYN ++ G C+ KVE+A
Sbjct: 390 VHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAW 449
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288
L + +G+ PD I TY ++ GL + + A EL R+M
Sbjct: 450 YLFCSLALKGVSPDVI-------TYITMMIGLRRKRLWREAHELYRKM 490
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 144/282 (51%), Gaps = 7/282 (2%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
+ +A + M E+ +P+ V ++ L+ E S + GI ++
Sbjct: 59 KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
LI ++ A L +M + G P +T+ L+NG+C +A SL D+++
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
G +P ++ Y ++I L ++ ++ A + ++ G+ PD+V +N+LI +G +
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVS 238
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
+L +M RM + PD +T++ L+ ++G++ EA++ ++M +R S NP +T
Sbjct: 239 ARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQR-------SVNPNIVT 291
Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
YN+LI GLC + D A+++L +VSKG P+ TY +LI G
Sbjct: 292 YNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLING 333
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 9/248 (3%)
Query: 58 KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117
KGNL A S R + S Y + L K +A + +M E +P +
Sbjct: 24 KGNLVTALSLR--ICNSRAFSGRSDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVD 81
Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
++ L+ + + SL + GI + ++T+LI + R+ A +
Sbjct: 82 FSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMM 141
Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
G P IV F +L++G C A SL+ ++ + P+ V YNT++ C +G+V
Sbjct: 142 KLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVN 201
Query: 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297
A +L MK+ GI+PD + TYN+LI L + ++ +L +M+ GI+PD
Sbjct: 202 TALDVLKHMKKMGIRPDVV-------TYNSLITRLFHSGTWGVSARILSDMMRMGISPDV 254
Query: 298 NTYFSLIE 305
T+ +LI+
Sbjct: 255 ITFSALID 262
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 159/295 (53%), Gaps = 10/295 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ GV+ D+ TY S V+G+C GR +A+R++ M +VP +T+ +ID + +G
Sbjct: 200 MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGK 259
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
A +EM ++ + P TYN LI+ L M ++ EA ML M KG +PD +TYN
Sbjct: 260 FSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNT 319
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING+C+ + L EM +G+ +TY ++I + R A ++F ++
Sbjct: 320 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR- 378
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P+I ++ L+ G C N +E+A L + M + ++ D TYN ++HG C+ G VE+A
Sbjct: 379 --PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 436
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295
L + +G+KPD +S Y +I G C+ ++ D ++ L R+M G+ P
Sbjct: 437 DLFRSLSCKGLKPDVVS-------YTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 167/340 (49%), Gaps = 39/340 (11%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +PD T S ++G C+ R+ +A ++ +M+E G P V YNT+IDG C G
Sbjct: 130 MMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGL 189
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A D M + G+ A TYN L+ L + +A ++++M + IVP+ IT+
Sbjct: 190 VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 249
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
+I+ + + G +A L++EM + + P + TY SLI L R+ EA Q+ + + KG
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEM----------------------------- 211
LPD+V +N LI+G C + ++ L +EM
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQ 369
Query: 212 ---DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268
RM P+ TY+ L++G C +VE+A L + M++ I+ D TYN +
Sbjct: 370 EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDIT-------TYNIV 422
Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
I G+CK + A +L R + KG+ PD +Y ++I G
Sbjct: 423 IHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFC 462
Score = 171 bits (432), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 152/299 (50%), Gaps = 7/299 (2%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
P + +S + K + + M+ G+ +YN +I+ C +A S
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
+M+K G P T + LI+ ++ +A D++ +M E G PD + YN +I+G C+
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
G A L D M G++ +TY SL+ L R +A +L + + + ++P+++
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
F A+ID G A L +EM R V PD TYN+L++G C G+V+EA+++LD M
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
+G PD + TYN LI G CK++ D +L REM +G+ D TY ++I+G
Sbjct: 307 TKGCLPDVV-------TYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 358
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 160/308 (51%), Gaps = 10/308 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G+ D Y+Y ++ +C+ R A ++ +M + G P VT ++LI+G+C
Sbjct: 95 MEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 154
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A +M + G P YN +I + +A ++ M G+ D++TYN
Sbjct: 155 VFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNS 214
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+ G C G A L +M+ + I P ++T+T++I V K+ + EA +L+E +
Sbjct: 215 LVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRC 274
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD+ +N+LI+G C +G ++ A +L M PD VTYNTL++G C+ +V+E
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 334
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L +M +RG+ D I TYN +IQG + D A+E+ M S+ P+ TY
Sbjct: 335 KLFREMAQRGLVGDTI-------TYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTY 384
Query: 301 FSLIEGIA 308
L+ G+
Sbjct: 385 SILLYGLC 392
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 135/286 (47%), Gaps = 28/286 (9%)
Query: 60 NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
NLE +M++ +P+ ++ ++ ++ + + M GI D +YN
Sbjct: 49 NLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYN 108
Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
I+IN CRC A S+ +M+ G +P ++T +SLI + NR+ +A L
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
G PD+V++N +IDG C G + A L M+R V D VTYN+L+ G C G+ +A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228
Query: 240 RRLLDQMKRRGIKPDHISF----------------------------NPTRLTYNALIQG 271
RL+ M R I P+ I+F +P TYN+LI G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288
Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317
LC + D A+++L MV+KG PD TY +LI G + E +
Sbjct: 289 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 334
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 168/337 (49%), Gaps = 42/337 (12%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
GV P+ + Y + + +CK + EA + ++M + GL P VTY+ LID +C +G L+ A
Sbjct: 362 GVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTA 421
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
SF EMV G+ + YN LI+ + A+ + EM K + P +TY L+ G
Sbjct: 422 LSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGG 481
Query: 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD 184
YC G KA L+ EM KGI P++ T+T+L+ L + + +A +LF + P+
Sbjct: 482 YCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPN 541
Query: 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD------------------------- 219
V +N +I+G+C G++ +AF LKEM + PD
Sbjct: 542 RVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601
Query: 220 ----------EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269
E+ Y L+HG CR+GK+EEA + +M +RG+ D + Y LI
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVC-------YGVLI 654
Query: 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
G K+++ L LL+EM +G+ PDD Y S+I+
Sbjct: 655 DGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDA 691
Score = 182 bits (461), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 11/318 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+ + ++PD TY + V G+CK E M+++M P+ ++L++G +G
Sbjct: 288 LAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGK 347
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A + +V G+ P YN LI L RK EA+ + MG+ G+ P+ +TY+I
Sbjct: 348 IEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSI 407
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ +CR G A S EM+ G++ ++ Y SLI K + A+ + K
Sbjct: 408 LIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKK 467
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P +V + +L+ G+C+ G I +A L EM + P T+ TL+ G R G + +A
Sbjct: 468 LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAV 527
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE--ELLREMVSKGITPDDN 298
+L ++M +KP+ R+TYN +I+G C +EGD+++ E L+EM KGI PD
Sbjct: 528 KLFNEMAEWNVKPN-------RVTYNVMIEGYC--EEGDMSKAFEFLKEMTEKGIVPDTY 578
Query: 299 TYFSLIEGIASVDKAAES 316
+Y LI G+ +A+E+
Sbjct: 579 SYRPLIHGLCLTGQASEA 596
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 179/391 (45%), Gaps = 80/391 (20%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G+ P YT+ + +SG+ + G + +A ++ +M E + P VTYN +I+GYC +G+
Sbjct: 498 MTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGD 557
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------------------------- 92
+ AF F EM ++GI+P +Y LIH L +
Sbjct: 558 MSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTG 617
Query: 93 -------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145
E K+ EA + +EM ++G+ D + Y +LI+G + + K F L EM +G
Sbjct: 618 LLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRG 677
Query: 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205
++P + YTS+I SK EA +++ + +G +P+ V + A+I+G C G + A
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737
Query: 206 SLLKEMDRMKVHPDEVTY-----------------------------------NTLMHGR 230
L +M + P++VTY N L+ G
Sbjct: 738 VLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGF 797
Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
CRQG++EEA L+ +M G+ PD I TY +I LC+ + A EL M
Sbjct: 798 CRQGRIEEASELITRMIGDGVSPDCI-------TYTTMINELCRRNDVKKAIELWNSMTE 850
Query: 291 KGITPDDNTYFSLIEGI---ASVDKAAESSN 318
KGI PD Y +LI G + KA E N
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRN 881
Score = 164 bits (416), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 153/330 (46%), Gaps = 32/330 (9%)
Query: 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFS 66
P S V G+ K G++EEA +++++ + G+ P YN LID C A
Sbjct: 329 SPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAEL 388
Query: 67 FRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
D M K G+ P TY++LI K+ A L EM + G+ YN LING+C
Sbjct: 389 LFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHC 448
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
+ G+ A EMI+K ++PT++TYTSL+ + ++ +A +L+ KG+ P I
Sbjct: 449 KFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIY 508
Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
F L+ G G I A L EM V P+ VTYN ++ G C +G + +A L +M
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568
Query: 247 KRRGIKPDHISFNP----------------------------TRLTYNALIQGLCKNQEG 278
+GI PD S+ P + Y L+ G C+ EG
Sbjct: 569 TEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR--EG 626
Query: 279 DLAEEL--LREMVSKGITPDDNTYFSLIEG 306
L E L +EMV +G+ D Y LI+G
Sbjct: 627 KLEEALSVCQEMVQRGVDLDLVCYGVLIDG 656
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 165/324 (50%), Gaps = 13/324 (4%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M ++ ++P TY S + G C +G++ +A R+ +M G+ P+ T+ TL+ G G
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGL 522
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A +EM + + P TYN++I E M +A + LKEM EKGIVPD+ +Y
Sbjct: 523 IRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRP 582
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
LI+G C G A +A D + HKG + + YT L+ ++ ++ EA + + + +
Sbjct: 583 LIHGLCLTGQASEAKVFVDGL-HKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQR 641
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
G+ D+V + LIDG + + + F LLKEM + PD+V Y +++ + + G +EA
Sbjct: 642 GVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701
Query: 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
+ D M G P+ + TY A+I GLCK + AE L +M P+ T
Sbjct: 702 FGIWDLMINEGCVPNEV-------TYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVT 754
Query: 300 YFS----LIEGIASVDKAAESSNS 319
Y L +G + KA E N+
Sbjct: 755 YGCFLDILTKGEVDMQKAVELHNA 778
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 7/287 (2%)
Query: 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72
Y + G C+EG+LEEA + ++M + G+ V Y LIDG + ++ F EM
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674
Query: 73 KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132
+G+ P Y +I EA + M +G VP+ +TY +ING C+ G
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVN 734
Query: 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALI 192
+A L +M P +TY + +L+K ++ N + KG+L + +N LI
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLI 794
Query: 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
G C G IE A L+ M V PD +TY T+++ CR+ V++A L + M +GI+
Sbjct: 795 RGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIR 854
Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
PD R+ YN LI G C E A EL EM+ +G+ P++ T
Sbjct: 855 PD-------RVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 7/305 (2%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
P+ T + + G+ K A + M G+ P Y +I C +L A
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
M G YN+LI L ++K+ EA + K++ K + PD +TY L+ G C+
Sbjct: 250 IAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCK 309
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
+ + DEM+ P+ +SL+ L K+ ++ EA L + + G+ P++ +
Sbjct: 310 VQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFV 369
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
+NALID C A L M ++ + P++VTY+ L+ CR+GK++ A L +M
Sbjct: 370 YNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMV 429
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
G+K +S P YN+LI G CK + AE + EM++K + P TY SL+ G
Sbjct: 430 DTGLK---LSVYP----YNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGY 482
Query: 308 ASVDK 312
S K
Sbjct: 483 CSKGK 487
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 112/225 (49%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG++PD Y S + K G +EA + + M G VP VTY +I+G C G
Sbjct: 673 MHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGF 732
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ A +M +P TY + L ++ L KG++ ++ TYN+
Sbjct: 733 VNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNM 792
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+CR G ++A L MI G+ P +TYT++I L ++N + +A +L+ + KG
Sbjct: 793 LIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKG 852
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225
+ PD V +N LI G C G + +A L EM R + P+ T T
Sbjct: 853 IRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRT 897
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 8/259 (3%)
Query: 48 YNTLIDGYC-NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106
++ LI Y ++ L+ F+ + K ++P T + L+H L+ R A ++ +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218
Query: 107 GEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166
GI PD Y +I C + +A + M G ++ Y LI L K+ ++
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278
Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
EA + ++ K + PD+V + L+ G C E ++ EM ++ P E ++L
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSL 338
Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
+ G ++GK+EEA L+ ++ G+ P+ YNALI LCK ++ AE L
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPN-------LFVYNALIDSLCKGRKFHEAELLFD 391
Query: 287 EMVSKGITPDDNTYFSLIE 305
M G+ P+D TY LI+
Sbjct: 392 RMGKIGLRPNDVTYSILID 410
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 8/212 (3%)
Query: 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRM 166
EK + S ++++LI Y R + MI K + P + T ++L+ L K
Sbjct: 149 EKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHF 208
Query: 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226
A +LF + ++ G+ PD+ ++ +I C ++ RA ++ M+ + V YN L
Sbjct: 209 GLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVL 268
Query: 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286
+ G C++ KV EA + + + +KPD + TY L+ GLCK QE ++ E++
Sbjct: 269 IDGLCKKQKVWEAVGIKKDLAGKDLKPDVV-------TYCTLVYGLCKVQEFEIGLEMMD 321
Query: 287 EMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318
EM+ +P + SL+EG+ K E+ N
Sbjct: 322 EMLCLRFSPSEAAVSSLVEGLRKRGKIEEALN 353
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 148/267 (55%), Gaps = 7/267 (2%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSF 67
P+S +Y + G+C+ GRLEEA + +QM E G P+ TY LI C++G ++ AF+
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323
Query: 68 RDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127
DEM+ +G P TY +LI L + K+ EA+ + ++M + I P ITYN LINGYC+
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCK 383
Query: 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
G AF L M + +P + T+ L+ L + + +A L + L G+ PDIV
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVS 443
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
+N LIDG C G++ A+ LL M+ + PD +T+ +++ C+QGK + A L M
Sbjct: 444 YNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLML 503
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCK 274
R+GI D + T LI G+CK
Sbjct: 504 RKGISLDEV-------TGTTLIDGVCK 523
Score = 184 bits (467), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 174/345 (50%), Gaps = 29/345 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M++ G Y + V+ +CK G E A + ++ + G V + +L+ G+C N
Sbjct: 186 MEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLN 245
Query: 61 LEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119
L A D M K+ P + +Y++LIH L ++ EA + +MGEKG P + TY
Sbjct: 246 LRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYT 305
Query: 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179
+LI C G KAF+L DEMI +G +P + TYT LI L + ++ EA+ + +
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365
Query: 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239
+ P ++ +NALI+G+C +G + AF LL M++ P+ T+N LM G CR GK +A
Sbjct: 366 RIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKA 425
Query: 240 RRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNALIQG 271
LL +M G+ PD +S+N P LT+ A+I
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485
Query: 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
CK + D+A L M+ KGI+ D+ T +LI+G+ V K ++
Sbjct: 486 FCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDA 530
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 178/393 (45%), Gaps = 81/393 (20%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG +P+ +TY + G+C++G++EEA+ + +M ++ + P+ +TYN LI+GYC G
Sbjct: 327 MIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGR 386
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ AF M K+ P T+N L+ L K +A +LK M + G+ PD ++YN+
Sbjct: 387 VVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNV 446
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G CR G+ A+ L M I+P LT+T++I KQ + A L KG
Sbjct: 447 LIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH----------------------- 217
+ D V LIDG C G A +L+ + +M++
Sbjct: 507 ISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEEL 566
Query: 218 ------------PDEVTYNTL-----------------------------------MHGR 230
P VTY TL ++G
Sbjct: 567 AMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGL 626
Query: 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290
C+ G+VEEA +LL M+ G+ P+H+ TY +++G N + D A E +R MV
Sbjct: 627 CQFGRVEEAEKLLSAMQDSGVSPNHV-------TYTVMVKGYVNNGKLDRALETVRAMVE 679
Query: 291 KGITPDDNTYFSLIEGIA----SVDKAAESSNS 319
+G +D Y SL++G +D + ES+ S
Sbjct: 680 RGYELNDRIYSSLLQGFVLSQKGIDNSEESTVS 712
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 28/344 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M +G QP + TY + +C G +++A + ++M G P TY LIDG C G
Sbjct: 292 MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGK 351
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A +MVK I P+ TYN LI+ + ++V A ++L M ++ P+ T+N
Sbjct: 352 IEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNE 411
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+ G CR G KA L M+ G+ P +++Y LI L ++ M A +L +
Sbjct: 412 LMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFD 471
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PD + F A+I+ C G + A + L M R + DEVT TL+ G C+ GK +A
Sbjct: 472 IEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDAL 531
Query: 241 RLLDQMKRRGI----------------------------KPDHISFNPTRLTYNALIQGL 272
+L+ + + I K + + P+ +TY L+ GL
Sbjct: 532 FILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGL 591
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
++ + + +L M G P+ Y +I G+ + E+
Sbjct: 592 IRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 101/245 (41%), Gaps = 43/245 (17%)
Query: 104 KEMGEKGIVPDSITYNILIN-----------------------------------GYCRC 128
+ M G V I Y ++N G+CR
Sbjct: 184 RRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRG 243
Query: 129 GNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187
N + A + D M + P ++Y+ LI L + R+ EA L + KG P
Sbjct: 244 LNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRT 303
Query: 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247
+ LI C G I++AF+L EM P+ TY L+ G CR GK+EEA + +M
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363
Query: 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307
+ I P I TYNALI G CK+ A ELL M + P+ T+ L+EG+
Sbjct: 364 KDRIFPSVI-------TYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416
Query: 308 ASVDK 312
V K
Sbjct: 417 CRVGK 421
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
A+ + M G M+ Y +++ L K A+ L G + D + +L+
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLL 238
Query: 194 GHCTNGNIERAFSLLKEMDR-MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252
G C N+ A + M + + P+ V+Y+ L+HG C G++EEA L DQM +G +
Sbjct: 239 GFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQ 298
Query: 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
P TR TY LI+ LC D A L EM+ +G P+ +TY LI+G+ K
Sbjct: 299 PS------TR-TYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGK 351
Query: 313 AAESS 317
E++
Sbjct: 352 IEEAN 356
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75
V+ +CKEGR +E++ +++ + E G V + +++ YC+K ++K G
Sbjct: 745 LVTRLCKEGRTDESNDLVQNVLERG-VFLEKAMDIIMESYCSKKKHTKCMELITLVLKSG 803
Query: 76 IMPTASTYNLLIHELLMERKMVEADDMLKE-MGEKGIVPDS--ITY 118
+P+ ++ L+I L E A +++ E + G+V S +TY
Sbjct: 804 FVPSFKSFCLVIQGLKKEGDAERARELVMELLTSNGVVEKSGVLTY 849
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 170/307 (55%), Gaps = 7/307 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+ S ++P+ + Y SF+S +C G + AS + +++ E GL+P V Y T+IDGYCN G
Sbjct: 364 IHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGR 423
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ AF + ++K G P+ +T +LI + +A+ + + M +G+ D +TYN
Sbjct: 424 TDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNN 483
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L++GY + K F L DEM GI P + TY LI + + + EA+++ + +G
Sbjct: 484 LMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRG 543
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+P + F +I G G+ + AF L M +++ PD VT + L+HG C+ ++E+A
Sbjct: 544 FVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAI 603
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
L +++ G+KPD + YN LI G C + + A EL+ MV +G+ P+++T+
Sbjct: 604 VLFNKLLDAGLKPDVV-------LYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTH 656
Query: 301 FSLIEGI 307
+L+ G+
Sbjct: 657 HALVLGL 663
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 170/350 (48%), Gaps = 42/350 (12%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK G++PD + F+ +CK G L+EA+ +L ++K G+ +V+ +++IDG+C G
Sbjct: 297 MKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGK 356
Query: 61 LEMAF----SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116
E A SFR + P Y+ + + M+ A + +E+ E G++PD +
Sbjct: 357 PEEAIKLIHSFR-------LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCV 409
Query: 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176
Y +I+GYC G KAF ++ G P++ T T LI S+ + +A+ +F N
Sbjct: 410 CYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNM 469
Query: 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236
+G+ D+V +N L+ G+ + + F L+ EM + PD TYN L+H +G +
Sbjct: 470 KTEGLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYI 529
Query: 237 EEARRLLDQMKRRGIKPDHISFN----------------------------PTRLTYNAL 268
+EA ++ ++ RRG P ++F P +T +AL
Sbjct: 530 DEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSAL 589
Query: 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV---DKAAE 315
+ G CK Q + A L +++ G+ PD Y +LI G SV +KA E
Sbjct: 590 LHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACE 639
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 17/316 (5%)
Query: 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMA 64
G+ P S + + + LE A +E M G A + I YC+ G +
Sbjct: 231 GIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKG 290
Query: 65 FSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124
+ M GI P + + I +L + EA +L ++ GI DS++ + +I+G
Sbjct: 291 WELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDG 350
Query: 125 YCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183
+C+ G ++A L IH ++P + Y+S + + M+ A +F+ G+LP
Sbjct: 351 FCKVGKPEEAIKL----IHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLP 406
Query: 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-RQGKVEEARRL 242
D V + +IDG+C G ++AF + + +P +T +T++ G C R G + +A +
Sbjct: 407 DCVCYTTMIDGYCNLGRTDKAFQYFGALLKSG-NPPSLTTSTILIGACSRFGSISDAESV 465
Query: 243 LDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302
MK G+K D + TYN L+ G K + + EL+ EM S GI+PD TY
Sbjct: 466 FRNMKTEGLKLDVV-------TYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNI 518
Query: 303 LIEGIAS---VDKAAE 315
LI + +D+A E
Sbjct: 519 LIHSMVVRGYIDEANE 534
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNP 260
+E A ++ M H + + + C G ++ LL MK GI+PD ++F
Sbjct: 252 LELAREFVEHMLSRGRHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFT- 310
Query: 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
I LCK A +L ++ GI+ D + S+I+G V K E+
Sbjct: 311 ------VFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEA 360
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 165/336 (49%), Gaps = 28/336 (8%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M G +P T+GS + G C R+ +A ++ M ++G P V YNTLIDG C G
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGE 191
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L +A +EM K+G+ TYN L+ L + +A ML++M ++ I PD +T+
Sbjct: 192 LNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTA 251
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ + + GN +A L+ EMI + P +TY S+I L R+ +A + F+ +KG
Sbjct: 252 LIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKG 311
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P++V +N LI G C ++ L + M + D TYNTL+HG C+ GK+ A
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVAL 371
Query: 241 RLLDQMKRRGIKPDHIS--------------------FNPTR--------LTYNALIQGL 272
+ M R + PD I+ F+ R + YN +I GL
Sbjct: 372 DIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL 431
Query: 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308
CK + + A EL + +G+ PD TY +I G+
Sbjct: 432 CKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLC 467
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 153/299 (51%), Gaps = 7/299 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G+ D TY + ++G+C GR +A+RML M + + P VT+ LID + +GN
Sbjct: 202 MEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGN 261
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A EM++ + P TYN +I+ L M ++ +A M KG P+ +TYN
Sbjct: 262 LDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNT 321
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G+C+ + L M +G + TY +LI + ++ A +F +++
Sbjct: 322 LISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRR 381
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ PDI+ L+ G C NG IE A +M + + V YN ++HG C+ KVE+A
Sbjct: 382 VTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAW 441
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299
L ++ G+KPD TY +I GLCKN A+EL+R M +GI N
Sbjct: 442 ELFCRLPVEGVKPD-------ARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493
Score = 171 bits (433), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 165/317 (52%), Gaps = 8/317 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ G+ D Y++ + C+ RL A +L +M + G P+ VT+ +L+ G+C
Sbjct: 97 MELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNR 156
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+ AFS MVK G P YN LI L ++ A ++L EM +KG+ D +TYN
Sbjct: 157 IGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNT 216
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
L+ G C G A + +M+ + I P ++T+T+LI V KQ + EA +L++ +
Sbjct: 217 LLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSS 276
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P+ V +N++I+G C +G + A M P+ VTYNTL+ G C+ V+E
Sbjct: 277 VDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGM 336
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L +M G FN TYN LI G C+ + +A ++ MVS+ +TPD T+
Sbjct: 337 KLFQRMSCEG-------FNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITH 389
Query: 301 FSLIEGIASVDKAAESS 317
L+ G+ V+ ES+
Sbjct: 390 CILLHGLC-VNGEIESA 405
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 147/288 (51%), Gaps = 7/288 (2%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
R E ++M+ G+ ++ LI +C L A S +M+K G P+ T+
Sbjct: 86 RYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFG 145
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
L+H + ++ +A ++ M + G P+ + YN LI+G C+ G A L +EM K
Sbjct: 146 SLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKK 205
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
G+ ++TY +L+ L R +A ++ + + + + PD+V F ALID GN++ A
Sbjct: 206 GLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEA 265
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
L KEM + V P+ VTYN++++G C G++ +A++ D M +G P+ + T
Sbjct: 266 QELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVV-------T 318
Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312
YN LI G CK + D +L + M +G D TY +LI G V K
Sbjct: 319 YNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 132/255 (51%), Gaps = 7/255 (2%)
Query: 54 GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP 113
G+ + E AF+ EMV +P+ + L+ R+ ++M GI
Sbjct: 45 GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104
Query: 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173
D ++ ILI+ +CRC A S+ +M+ G +P+++T+ SL+ NR+ +A L
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233
+ G P++V++N LIDG C NG + A LL EM++ + D VTYNTL+ G C
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224
Query: 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293
G+ +A R+L M +R I PD + T+ ALI K D A+EL +EM+ +
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVV-------TFTALIDVFVKQGNLDEAQELYKEMIQSSV 277
Query: 294 TPDDNTYFSLIEGIA 308
P++ TY S+I G+
Sbjct: 278 DPNNVTYNSIINGLC 292
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 7/184 (3%)
Query: 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193
AF+L EM+H P+++ +T L+ + R + G+ D+ F LI
Sbjct: 55 AFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIH 114
Query: 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253
C + A S+L +M ++ P VT+ +L+HG C ++ +A L+ M + G
Sbjct: 115 CFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG--- 171
Query: 254 DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313
+ P + YN LI GLCKN E ++A ELL EM KG+ D TY +L+ G+ +
Sbjct: 172 ----YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227
Query: 314 AESS 317
++++
Sbjct: 228 SDAA 231
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 185 bits (469), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 164/316 (51%), Gaps = 7/316 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
MK GV + TY + K G++ +A ++ ++M+E G+ Y +LI C KGN
Sbjct: 285 MKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGN 344
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ AF DE+ ++G+ P++ TY LI + +M A+ ++ EM KG+ + +N
Sbjct: 345 MKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNT 404
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+GYCR G +A ++D M KG Q + T ++ ++ R EA Q + G
Sbjct: 405 LIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGG 464
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ V + LID +C GN+E A L EM V P+ +TYN +++ C+QGK++EAR
Sbjct: 465 VKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEAR 524
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
+L M+ G+ PD TY +LI G C D A L EM KG+ + TY
Sbjct: 525 KLRANMEANGMDPDS-------YTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTY 577
Query: 301 FSLIEGIASVDKAAES 316
+I G++ K+ E+
Sbjct: 578 TVMISGLSKAGKSDEA 593
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/351 (31%), Positives = 167/351 (47%), Gaps = 42/351 (11%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M GV+ Y+ V G+C+ G +E++ +++++ G+ P A TYNT+I+ Y + +
Sbjct: 215 MVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRD 274
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
M K G++ TY LL+ + KM +A+ + EM E+GI D Y
Sbjct: 275 FSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTS 334
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ CR GN K+AF L DE+ KG+ P+ TY +LI + K M A+ L +KG
Sbjct: 335 LISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKG 394
Query: 181 MLPDIVMFNALIDGHCTNGNIERA-------------------------FSLLKEMDRMK 215
+ V+FN LIDG+C G ++ A F+ LK D K
Sbjct: 395 VNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAK 454
Query: 216 ----------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265
V V+Y L+ C++G VEEA+RL +M +G++P+ I TY
Sbjct: 455 QWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAI-------TY 507
Query: 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
N +I CK + A +L M + G+ PD TY SLI G D E+
Sbjct: 508 NVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEA 558
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 139/255 (54%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
+ +G+ P SYTYG+ + G+CK G + A ++ +M+ G+ T V +NTLIDGYC KG
Sbjct: 355 LTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGM 414
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
++ A D M ++G T N + ++ EA L M E G+ +++Y
Sbjct: 415 VDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTN 474
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+ YC+ GN ++A L EM KG+QP +TY +I+ KQ ++ EA +L N A G
Sbjct: 475 LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANG 534
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
M PD + +LI G C N++ A L EM + + VTY ++ G + GK +EA
Sbjct: 535 MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF 594
Query: 241 RLLDQMKRRGIKPDH 255
L D+MKR+G D+
Sbjct: 595 GLYDEMKRKGYTIDN 609
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 102/192 (53%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+ +G Q D +T + S + R +EA + L +M E G+ + V+Y LID YC +GN
Sbjct: 425 MEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGN 484
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
+E A EM +G+ P A TYN++I+ + K+ EA + M G+ PDS TY
Sbjct: 485 VEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTS 544
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G C N +A L EM KG+ +TYT +I LSK + EA L++ KG
Sbjct: 545 LIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKG 604
Query: 181 MLPDIVMFNALI 192
D ++ ALI
Sbjct: 605 YTIDNKVYTALI 616
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 10/263 (3%)
Query: 55 YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD 114
Y + G E D MVK+G+ + + + R++ ++ + M + G+
Sbjct: 164 YVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKIT 223
Query: 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174
+ I++ G CR G +K+ L E KGI+P TY ++I KQ + + +
Sbjct: 224 VYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLK 283
Query: 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234
G++ + V + L++ NG + A L EM + D Y +L+ CR+G
Sbjct: 284 VMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKG 343
Query: 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294
++ A L D++ +G+ +P+ TY ALI G+CK E AE L+ EM SKG+
Sbjct: 344 NMKRAFLLFDELTEKGL-------SPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVN 396
Query: 295 PDDNTYFSLIEGIAS---VDKAA 314
+ +LI+G VD+A+
Sbjct: 397 ITQVVFNTLIDGYCRKGMVDEAS 419
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 161/316 (50%), Gaps = 10/316 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M R PD YTY + + G+CKE R++EA +L++M+ G P+ V YN LIDG C KG+
Sbjct: 213 MPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGD 272
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L D M +G +P TYN LIH L ++ K+ +A +L+ M +P+ +TY
Sbjct: 273 LTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGT 332
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LING + A A L M +G Y+ LI L K+ + EA L+ KG
Sbjct: 333 LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG 392
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
P+IV+++ L+DG C G A +L M P+ TY++LM G + G EEA
Sbjct: 393 CKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV 452
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
++ +M + G + + Y+ LI GLC A + +M++ GI PD Y
Sbjct: 453 QVWKEMDKTGCSRN-------KFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAY 505
Query: 301 FSLIE---GIASVDKA 313
S+I+ GI S+D A
Sbjct: 506 SSIIKGLCGIGSMDAA 521
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 175/348 (50%), Gaps = 35/348 (10%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M+S G P Y + G+CK+G L +++++ M G VP VTYNTLI G C KG
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
L+ A S + MV +P TY LI+ L+ +R+ +A +L M E+G + Y++
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI+G + G A++A SL +M KG +P ++ Y+ L+ L ++ + EA ++ +A G
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
LP+ +++L+ G G E A + KEMD+ ++ Y+ L+ G C G+V+EA
Sbjct: 428 CLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAM 487
Query: 241 RLLDQMKRRGIKPDHISFN-------------------------------PTRLTYNALI 269
+ +M GIKPD ++++ P +TYN L+
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILL 547
Query: 270 QGLCKNQEGDLAEELLREMVSKGITPD---DNTYF-SLIEGIASVDKA 313
GLC ++ A +LL M+ +G PD NT+ +L E S DK
Sbjct: 548 DGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKG 595
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 7/311 (2%)
Query: 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF 65
+ P+ ++ + +CK ++ A + M E +P TY TL+DG C + ++ A
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125
DEM +G P+ YN+LI L + + ++ M KG VP+ +TYN LI+G
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185
C G KA SL + M+ P +TY +LI L KQ R +A +L + +G +
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ 362
Query: 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245
+++ LI G G E A SL ++M P+ V Y+ L+ G CR+GK EA+ +L++
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNR 422
Query: 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305
M G P+ TY++L++G K + A ++ +EM G + + Y LI+
Sbjct: 423 MIASGCLPNA-------YTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLID 475
Query: 306 GIASVDKAAES 316
G+ V + E+
Sbjct: 476 GLCGVGRVKEA 486
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 11/274 (4%)
Query: 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQG----IMPTASTYNLLIHELLMERKMVEADDM 102
++N++++ N+G F D +V I P ++NL+I L R + A ++
Sbjct: 150 SFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEV 209
Query: 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162
+ M E+ +PD TY L++G C+ +A L DEM +G P+ + Y LI L K
Sbjct: 210 FRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCK 269
Query: 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222
+ + +L +N KG +P+ V +N LI G C G +++A SLL+ M K P++VT
Sbjct: 270 KGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVT 329
Query: 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282
Y TL++G +Q + +A RLL M+ RG ++ + Y+ LI GL K + + A
Sbjct: 330 YGTLINGLVKQRRATDAVRLLSSMEERG-------YHLNQHIYSVLISGLFKEGKAEEAM 382
Query: 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
L R+M KG P+ Y L++G+ K E+
Sbjct: 383 SLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 12/310 (3%)
Query: 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM 71
T S + G + ++L +++ V ++ + Y + A M
Sbjct: 79 TLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRM 138
Query: 72 V-----KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126
V K+ + S N++I+E L R + D ++ I P+ +++N++I C
Sbjct: 139 VDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALC 198
Query: 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186
+ +A + M + P TY +L+ L K+ R+ EA L + ++G P V
Sbjct: 199 KLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPV 258
Query: 187 MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246
++N LIDG C G++ R L+ M P+EVTYNTL+HG C +GK+++A LL++M
Sbjct: 259 IYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERM 318
Query: 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306
P+ + TY LI GL K + A LL M +G + + Y LI G
Sbjct: 319 VSSKCIPNDV-------TYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371
Query: 307 IASVDKAAES 316
+ KA E+
Sbjct: 372 LFKEGKAEEA 381
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 17/242 (7%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M + G P++YTY S + G K G EEA ++ ++M + G Y+ LIDG C G
Sbjct: 423 MIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGR 482
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM---GEKGIVPDSIT 117
++ A +M+ GI P Y+ +I L M A + EM E PD +T
Sbjct: 483 VKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVT 542
Query: 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177
YNIL++G C + +A L + M+ +G P ++T + + LS+++ + + F L
Sbjct: 543 YNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEEL 602
Query: 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237
+L + G CT +++ M + P T+ ++ C+ K+
Sbjct: 603 VVRLLK-----RQRVSGACT---------IVEVMLGKYLAPKTSTWAMIVREICKPKKIN 648
Query: 238 EA 239
A
Sbjct: 649 AA 650
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 184 bits (466), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 9/310 (2%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN 60
M RG + Y + + G+C+ +A +L +M+ N L+P +YNT+I G+C
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192
Query: 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120
LE A +EM G + T+ +LI KM EA LKEM G+ D + Y
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTS 252
Query: 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180
LI G+C CG + +L DE++ +G P +TY +LI K ++ EA ++FE + +G
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERG 312
Query: 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240
+ P++ + LIDG C G + A LL M P+ VTYN +++ C+ G V +A
Sbjct: 313 VRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAV 372
Query: 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV--SKGITPDDN 298
+++ MK+R +PD+I TYN L+ GLC + D A +LL M+ S PD
Sbjct: 373 EIVELMKKRRTRPDNI-------TYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425
Query: 299 TYFSLIEGIA 308
+Y +LI G+
Sbjct: 426 SYNALIHGLC 435
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 11/317 (3%)
Query: 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM 63
RG P + TY + + G CK G+L+EAS + E M E G+ P TY LIDG C G +
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335
Query: 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123
A + M+++ P A TYN++I++L + + +A ++++ M ++ PD+ITYNIL+
Sbjct: 336 ALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLG 395
Query: 124 GYCRCGNAKKAFSLHDEMIHKG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181
G C G+ +A L M+ P +++Y +LI L K+NR+ +A +++ + K
Sbjct: 396 GLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLG 455
Query: 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241
D V N L++ G++ +A L K++ K+ + TY ++ G C+ G + A+
Sbjct: 456 AGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKG 515
Query: 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301
LL +M+ ++P + YN L+ LCK D A L EM PD ++
Sbjct: 516 LLCKMRVSELQP-------SVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFN 568
Query: 302 SLIEGI--ASVDKAAES 316
+I+G A K+AES
Sbjct: 569 IMIDGSLKAGDIKSAES 585
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 156/299 (52%), Gaps = 11/299 (3%)
Query: 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNK 58
MK R +PD+ TY + G+C +G L+EAS++L M ++ P ++YN LI G C +
Sbjct: 378 MKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKE 437
Query: 59 GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118
L A D +V++ T N+L++ L + +A ++ K++ + IV +S TY
Sbjct: 438 NRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497
Query: 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178
+I+G+C+ G A L +M +QP++ Y L+ L K+ + +A +LFE
Sbjct: 498 TAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR 557
Query: 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238
PD+V FN +IDG G+I+ A SLL M R + PD TY+ L++ + G ++E
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDE 617
Query: 239 ARRLLDQMKRRGIKPD-HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296
A D+M G +PD HI +++++ E D EL++++V K I D
Sbjct: 618 AISFFDKMVDSGFEPDAHIC--------DSVLKYCISQGETDKLTELVKKLVDKDIVLD 668
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 131/274 (47%), Gaps = 7/274 (2%)
Query: 27 EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86
E A +M E V+ + L++ Y AF M+K+G +N+L
Sbjct: 89 ELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNIL 148
Query: 87 IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI 146
+ L + +A +L+EM ++PD +YN +I G+C +KA L +EM G
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208
Query: 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206
+++T+ LI K +M EA + G+ D+V++ +LI G C G ++R +
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKA 268
Query: 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266
L E+ P +TYNTL+ G C+ G+++EA + + M RG++P+ TY
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVY-------TYT 321
Query: 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300
LI GLC + A +LL M+ K P+ TY
Sbjct: 322 GLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTY 355
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 139/292 (47%), Gaps = 8/292 (2%)
Query: 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84
+L+ A + +Q ++G A N L+ N E+AFSF +M++ + +
Sbjct: 53 QLKNAVSVFQQAVDSG-SSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLS 111
Query: 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144
L+ + RK A +L M ++G + +NIL+ G CR KA SL EM
Sbjct: 112 GLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRN 171
Query: 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204
+ P + +Y ++I + + +A +L G +V + LID C G ++ A
Sbjct: 172 SLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEA 231
Query: 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264
LKEM M + D V Y +L+ G C G+++ + L D++ RG +P +T
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGD-------SPCAIT 284
Query: 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316
YN LI+G CK + A E+ M+ +G+ P+ TY LI+G+ V K E+
Sbjct: 285 YNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 36/272 (13%)
Query: 8 PDSYTYGSFVSGMCKEGRLEEA-----------------------------------SRM 32
PD +Y + + G+CKE RL +A +
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 33 LEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92
+Q+ ++ +V + TY +IDG+C G L +A +M + P+ YN L+ L
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 93 ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152
E + +A + +EM PD +++NI+I+G + G+ K A SL M G+ P + T
Sbjct: 542 EGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFT 601
Query: 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212
Y+ LI K + EA F+ + G PD + ++++ + G ++ L+K++
Sbjct: 602 YSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLV 661
Query: 213 RMKVHPDEVTYNTLMHGRCR-QGKVEEARRLL 243
+ D+ T+M C ++ A+RLL
Sbjct: 662 DKDIVLDKELTCTVMDYMCNSSANMDLAKRLL 693
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,718,178
Number of Sequences: 539616
Number of extensions: 4746850
Number of successful extensions: 25061
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 13909
Number of HSP's gapped (non-prelim): 3578
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)