Query 039029
Match_columns 319
No_of_seqs 613 out of 1475
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 05:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.2E-56 9.1E-61 387.6 38.0 310 1-317 463-774 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.2E-54 1.1E-58 374.6 38.9 304 8-318 435-740 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 6.4E-50 1.4E-54 345.5 28.7 298 1-317 149-482 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.3E-49 9.4E-54 340.4 31.6 293 7-317 186-514 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.2E-47 2.7E-52 338.6 32.9 300 7-317 250-645 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 9.1E-47 2E-51 333.2 31.9 296 7-317 149-444 (857)
7 PRK11788 tetratricopeptide rep 99.9 9.3E-23 2E-27 166.4 33.9 288 16-317 41-338 (389)
8 PRK11788 tetratricopeptide rep 99.9 8E-23 1.7E-27 166.8 31.1 277 9-298 68-354 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.7E-22 5.9E-27 180.8 36.4 292 10-318 601-892 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 2.3E-21 4.9E-26 174.9 36.5 294 7-316 462-755 (899)
11 PRK15174 Vi polysaccharide exp 99.9 1.8E-19 3.9E-24 154.4 35.9 293 10-318 76-373 (656)
12 PRK15174 Vi polysaccharide exp 99.9 5.2E-19 1.1E-23 151.6 34.0 290 14-318 46-339 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-18 5.2E-23 147.7 36.9 305 6-318 156-563 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-17 2.4E-22 143.7 35.8 292 13-318 130-488 (615)
15 KOG4626 O-linked N-acetylgluco 99.8 9.7E-19 2.1E-23 139.7 20.9 257 47-319 220-478 (966)
16 KOG4626 O-linked N-acetylgluco 99.8 6.8E-18 1.5E-22 135.0 22.4 291 10-317 116-442 (966)
17 PRK11447 cellulose synthase su 99.8 3.2E-16 6.8E-21 143.3 36.1 167 10-179 303-524 (1157)
18 PRK11447 cellulose synthase su 99.8 5.7E-16 1.2E-20 141.6 35.6 289 17-318 358-732 (1157)
19 PF13429 TPR_15: Tetratricopep 99.8 8.7E-19 1.9E-23 136.0 13.9 262 15-290 13-276 (280)
20 PRK10747 putative protoheme IX 99.8 2.4E-15 5.2E-20 122.1 32.2 278 22-318 96-382 (398)
21 TIGR00540 hemY_coli hemY prote 99.8 2.6E-15 5.6E-20 122.5 32.4 286 21-317 95-390 (409)
22 KOG4422 Uncharacterized conser 99.8 2.5E-15 5.5E-20 115.4 29.4 305 6-314 203-578 (625)
23 PRK10049 pgaA outer membrane p 99.8 9.8E-15 2.1E-19 128.0 36.1 301 10-318 49-414 (765)
24 PF13429 TPR_15: Tetratricopep 99.8 5.8E-18 1.2E-22 131.4 14.2 255 50-318 13-269 (280)
25 PRK09782 bacteriophage N4 rece 99.8 9.9E-15 2.1E-19 128.8 33.0 264 9-290 476-739 (987)
26 PRK10049 pgaA outer membrane p 99.8 2.6E-14 5.6E-19 125.5 34.2 297 9-318 82-448 (765)
27 KOG1126 DNA-binding cell divis 99.8 1.1E-15 2.3E-20 123.3 23.2 277 24-317 333-611 (638)
28 PRK10747 putative protoheme IX 99.7 5.2E-14 1.1E-18 114.3 31.3 261 13-291 121-390 (398)
29 COG3071 HemY Uncharacterized e 99.7 1.6E-13 3.5E-18 104.6 30.8 279 22-317 96-381 (400)
30 COG2956 Predicted N-acetylgluc 99.7 7.2E-14 1.6E-18 103.6 27.4 273 22-308 47-326 (389)
31 KOG1155 Anaphase-promoting com 99.7 2.4E-14 5.3E-19 111.0 25.8 285 18-317 235-527 (559)
32 PRK09782 bacteriophage N4 rece 99.7 1.1E-13 2.3E-18 122.5 32.8 253 44-315 476-729 (987)
33 TIGR00540 hemY_coli hemY prote 99.7 1.9E-13 4.2E-18 111.6 30.9 274 7-290 114-398 (409)
34 PRK14574 hmsH outer membrane p 99.7 6.7E-13 1.4E-17 115.2 34.8 296 17-317 109-470 (822)
35 KOG1155 Anaphase-promoting com 99.7 1.4E-13 3.1E-18 106.8 27.0 292 4-310 256-553 (559)
36 KOG4422 Uncharacterized conser 99.7 1.5E-13 3.3E-18 105.8 26.6 298 10-313 116-449 (625)
37 PRK14574 hmsH outer membrane p 99.7 1E-12 2.2E-17 114.0 33.9 288 16-317 40-387 (822)
38 KOG1126 DNA-binding cell divis 99.7 1.1E-13 2.4E-18 112.0 23.9 265 11-292 354-621 (638)
39 KOG2076 RNA polymerase III tra 99.6 6.1E-12 1.3E-16 105.4 32.0 297 10-317 139-503 (895)
40 COG3071 HemY Uncharacterized e 99.6 6.6E-12 1.4E-16 96.0 29.4 270 11-296 119-395 (400)
41 PRK12370 invasion protein regu 99.6 9.7E-13 2.1E-17 111.5 27.8 216 25-248 276-501 (553)
42 KOG2003 TPR repeat-containing 99.6 8.2E-13 1.8E-17 102.8 24.2 282 18-314 427-711 (840)
43 TIGR02521 type_IV_pilW type IV 99.6 2.2E-12 4.8E-17 97.7 25.6 202 43-248 29-231 (234)
44 TIGR02521 type_IV_pilW type IV 99.6 2E-12 4.3E-17 98.0 25.1 200 10-213 31-231 (234)
45 KOG1173 Anaphase-promoting com 99.6 6E-12 1.3E-16 100.3 27.7 290 5-309 239-534 (611)
46 COG2956 Predicted N-acetylgluc 99.6 8.7E-12 1.9E-16 92.8 26.8 266 10-291 69-347 (389)
47 PRK12370 invasion protein regu 99.6 3.7E-12 8E-17 108.0 28.4 234 44-291 255-502 (553)
48 KOG1129 TPR repeat-containing 99.6 4.2E-13 9E-18 100.0 18.0 233 49-296 227-461 (478)
49 KOG2002 TPR-containing nuclear 99.6 5E-12 1.1E-16 106.7 26.2 297 9-317 413-736 (1018)
50 KOG4318 Bicoid mRNA stability 99.6 4.4E-13 9.6E-18 111.9 19.1 86 1-98 16-101 (1088)
51 KOG1129 TPR repeat-containing 99.6 1.2E-12 2.6E-17 97.6 19.1 225 82-317 225-449 (478)
52 KOG2076 RNA polymerase III tra 99.6 4.3E-11 9.2E-16 100.5 29.3 297 9-316 172-545 (895)
53 KOG1840 Kinesin light chain [C 99.6 4.6E-12 9.9E-17 103.2 23.1 244 44-290 198-478 (508)
54 KOG2002 TPR-containing nuclear 99.6 6E-12 1.3E-16 106.2 24.2 279 3-291 445-745 (1018)
55 KOG0547 Translocase of outer m 99.5 1.2E-10 2.7E-15 91.5 26.6 195 118-318 363-558 (606)
56 PF12569 NARP1: NMDA receptor- 99.5 2.8E-10 6.2E-15 93.9 28.8 286 16-317 10-325 (517)
57 KOG0495 HAT repeat protein [RN 99.5 1.5E-09 3.3E-14 88.6 31.9 295 11-313 517-867 (913)
58 PF13041 PPR_2: PPR repeat fam 99.5 9.9E-14 2.1E-18 76.7 5.8 50 8-57 1-50 (50)
59 KOG1840 Kinesin light chain [C 99.5 2.7E-11 5.8E-16 98.8 22.0 239 10-248 199-478 (508)
60 KOG1173 Anaphase-promoting com 99.5 1.3E-10 2.8E-15 92.9 24.5 266 44-318 243-510 (611)
61 PRK11189 lipoprotein NlpI; Pro 99.5 2.1E-10 4.5E-15 89.5 25.1 233 59-302 40-275 (296)
62 PF13041 PPR_2: PPR repeat fam 99.5 2.4E-13 5.2E-18 75.2 6.2 50 260-309 1-50 (50)
63 COG3063 PilF Tfp pilus assembl 99.4 4.1E-10 8.9E-15 80.2 21.5 208 81-301 36-244 (250)
64 KOG0547 Translocase of outer m 99.4 4.2E-10 9.1E-15 88.6 23.5 224 20-249 336-566 (606)
65 COG3063 PilF Tfp pilus assembl 99.4 9.1E-10 2E-14 78.5 23.1 198 47-248 37-235 (250)
66 KOG0495 HAT repeat protein [RN 99.4 5.1E-09 1.1E-13 85.7 30.1 298 4-317 473-773 (913)
67 PRK11189 lipoprotein NlpI; Pro 99.4 7.3E-10 1.6E-14 86.5 25.0 219 23-250 39-266 (296)
68 KOG2003 TPR repeat-containing 99.4 5.4E-10 1.2E-14 87.5 22.7 239 24-277 470-709 (840)
69 KOG1174 Anaphase-promoting com 99.4 4.3E-09 9.2E-14 81.5 26.9 285 9-311 231-518 (564)
70 PF12569 NARP1: NMDA receptor- 99.4 4.2E-09 9.2E-14 87.1 27.4 272 10-290 38-333 (517)
71 KOG1915 Cell cycle control pro 99.3 3.9E-08 8.5E-13 77.7 28.8 285 6-305 170-548 (677)
72 KOG1174 Anaphase-promoting com 99.3 1.2E-08 2.6E-13 79.1 25.5 297 6-317 190-491 (564)
73 cd05804 StaR_like StaR_like; a 99.3 6.5E-08 1.4E-12 78.3 31.3 298 11-317 7-327 (355)
74 KOG1915 Cell cycle control pro 99.3 3.4E-08 7.3E-13 78.0 27.6 253 56-316 152-490 (677)
75 KOG1125 TPR repeat-containing 99.3 3.2E-09 7E-14 85.4 21.9 260 17-284 292-564 (579)
76 cd05804 StaR_like StaR_like; a 99.3 5.1E-08 1.1E-12 78.9 28.9 271 17-291 50-336 (355)
77 KOG1125 TPR repeat-containing 99.2 1.5E-08 3.2E-13 81.7 20.8 249 54-314 294-559 (579)
78 KOG4162 Predicted calmodulin-b 99.2 2.3E-07 5E-12 77.5 28.0 301 5-317 318-774 (799)
79 KOG1070 rRNA processing protei 99.2 6.3E-08 1.4E-12 85.8 25.7 236 44-288 1457-1697(1710)
80 PF04733 Coatomer_E: Coatomer 99.2 5.4E-09 1.2E-13 80.6 17.3 256 17-297 8-269 (290)
81 PLN02789 farnesyltranstransfer 99.2 2.1E-07 4.5E-12 72.9 25.8 214 13-232 40-267 (320)
82 KOG4340 Uncharacterized conser 99.2 5.7E-08 1.2E-12 72.3 21.2 206 1-216 1-209 (459)
83 KOG4318 Bicoid mRNA stability 99.2 5.5E-09 1.2E-13 88.2 17.5 256 31-314 11-288 (1088)
84 PF04733 Coatomer_E: Coatomer 99.1 4E-09 8.7E-14 81.3 15.2 239 54-315 10-253 (290)
85 KOG1070 rRNA processing protei 99.1 1.7E-07 3.7E-12 83.1 25.5 233 9-247 1457-1698(1710)
86 PF12854 PPR_1: PPR repeat 99.1 8.9E-11 1.9E-15 58.3 3.3 34 4-37 1-34 (34)
87 PLN02789 farnesyltranstransfer 99.1 7.4E-07 1.6E-11 69.9 26.4 229 48-289 40-300 (320)
88 KOG1156 N-terminal acetyltrans 99.1 2.7E-06 5.8E-11 70.1 29.8 82 226-316 377-458 (700)
89 KOG1156 N-terminal acetyltrans 99.1 1.4E-06 3E-11 71.7 28.1 296 13-317 44-425 (700)
90 KOG1128 Uncharacterized conser 99.1 6.7E-08 1.5E-12 80.2 20.4 223 6-249 394-616 (777)
91 KOG2047 mRNA splicing factor [ 99.1 2.8E-06 6E-11 70.1 28.2 275 11-298 249-585 (835)
92 KOG0624 dsRNA-activated protei 99.1 2.5E-06 5.4E-11 65.1 26.4 289 13-317 41-361 (504)
93 PRK10370 formate-dependent nit 99.0 2.7E-07 5.9E-12 67.3 19.7 119 163-291 52-173 (198)
94 COG5010 TadD Flp pilus assembl 99.0 2.5E-07 5.5E-12 67.6 18.8 165 114-290 66-230 (257)
95 TIGR03302 OM_YfiO outer membra 99.0 2.8E-07 6E-12 69.9 20.3 184 12-214 35-232 (235)
96 COG5010 TadD Flp pilus assembl 99.0 4.7E-07 1E-11 66.3 19.9 159 84-246 70-228 (257)
97 KOG1128 Uncharacterized conser 99.0 1.6E-07 3.4E-12 78.1 19.1 233 48-308 401-634 (777)
98 PRK10370 formate-dependent nit 99.0 5.5E-07 1.2E-11 65.8 20.2 120 93-215 52-174 (198)
99 TIGR03302 OM_YfiO outer membra 99.0 4.2E-07 9E-12 69.0 20.4 188 43-249 31-232 (235)
100 PRK14720 transcript cleavage f 99.0 1.7E-06 3.7E-11 75.7 25.4 232 10-273 31-268 (906)
101 PRK04841 transcriptional regul 98.9 8.2E-06 1.8E-10 74.7 30.9 299 15-317 414-751 (903)
102 KOG4340 Uncharacterized conser 98.9 3.5E-07 7.7E-12 68.2 16.5 233 46-288 11-267 (459)
103 PRK15359 type III secretion sy 98.9 6.7E-07 1.5E-11 61.8 16.5 108 31-144 14-121 (144)
104 PRK15179 Vi polysaccharide bio 98.9 4.6E-06 1E-10 72.2 24.8 180 42-231 83-266 (694)
105 PRK04841 transcriptional regul 98.9 9.3E-06 2E-10 74.3 28.5 273 17-291 459-760 (903)
106 PRK15179 Vi polysaccharide bio 98.9 4.9E-06 1.1E-10 72.0 24.6 145 77-225 83-227 (694)
107 PRK14720 transcript cleavage f 98.9 4.6E-06 9.9E-11 73.2 24.4 225 43-308 29-268 (906)
108 PRK15359 type III secretion sy 98.8 1E-06 2.2E-11 60.9 16.4 92 120-213 29-120 (144)
109 KOG4162 Predicted calmodulin-b 98.8 1.7E-05 3.8E-10 66.8 25.4 254 27-291 461-783 (799)
110 KOG0548 Molecular co-chaperone 98.8 1.9E-05 4.1E-10 63.8 24.4 294 17-318 9-413 (539)
111 PF12854 PPR_1: PPR repeat 98.8 8.9E-09 1.9E-13 51.1 3.9 32 110-141 2-33 (34)
112 KOG2376 Signal recognition par 98.8 3.6E-05 7.8E-10 63.1 25.8 124 15-145 17-140 (652)
113 KOG3081 Vesicle coat complex C 98.8 2E-05 4.4E-10 58.1 23.2 264 2-291 2-271 (299)
114 KOG3060 Uncharacterized conser 98.8 8.8E-06 1.9E-10 59.5 20.0 190 22-215 24-221 (289)
115 KOG0624 dsRNA-activated protei 98.8 3.8E-05 8.2E-10 58.9 24.7 270 8-291 67-370 (504)
116 KOG3617 WD40 and TPR repeat-co 98.8 3.4E-06 7.4E-11 71.6 19.3 230 19-289 737-994 (1416)
117 KOG3081 Vesicle coat complex C 98.7 9.1E-06 2E-10 59.8 19.0 220 15-249 46-271 (299)
118 TIGR02552 LcrH_SycD type III s 98.7 3.3E-06 7.1E-11 58.0 15.5 97 116-214 18-114 (135)
119 COG4783 Putative Zn-dependent 98.7 3.8E-05 8.3E-10 61.5 22.7 149 123-300 314-462 (484)
120 TIGR02552 LcrH_SycD type III s 98.7 3.5E-06 7.6E-11 57.8 14.9 97 46-144 18-114 (135)
121 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1.6E-06 3.6E-11 69.4 14.6 126 151-289 170-295 (395)
122 KOG3785 Uncharacterized conser 98.7 8.2E-05 1.8E-09 57.4 26.1 89 17-106 29-117 (557)
123 KOG3060 Uncharacterized conser 98.6 6.3E-05 1.4E-09 55.2 23.1 189 58-250 25-221 (289)
124 KOG0548 Molecular co-chaperone 98.6 5.1E-05 1.1E-09 61.5 21.6 238 48-309 227-471 (539)
125 COG4783 Putative Zn-dependent 98.6 7.9E-05 1.7E-09 59.8 22.4 143 86-249 312-454 (484)
126 KOG3785 Uncharacterized conser 98.6 4E-05 8.7E-10 59.0 19.9 216 49-275 289-514 (557)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 3.1E-06 6.8E-11 67.8 14.9 126 47-178 171-296 (395)
128 KOG2376 Signal recognition par 98.6 0.0002 4.2E-09 59.0 29.3 119 187-311 378-506 (652)
129 KOG2047 mRNA splicing factor [ 98.6 0.00023 5.1E-09 59.2 28.5 293 12-316 104-444 (835)
130 PF09976 TPR_21: Tetratricopep 98.5 1.5E-05 3.2E-10 55.4 15.2 125 118-246 15-144 (145)
131 KOG0985 Vesicle coat protein c 98.5 0.00033 7.2E-09 61.5 25.3 163 114-313 1103-1265(1666)
132 PF09976 TPR_21: Tetratricopep 98.5 1E-05 2.2E-10 56.2 13.9 128 151-288 13-144 (145)
133 KOG0985 Vesicle coat protein c 98.5 8.4E-05 1.8E-09 65.0 21.1 116 79-209 1103-1218(1666)
134 KOG1914 mRNA cleavage and poly 98.5 0.00037 8.1E-09 56.9 27.9 133 152-291 368-501 (656)
135 TIGR00756 PPR pentatricopeptid 98.5 3.1E-07 6.7E-12 46.3 4.2 34 264-297 2-35 (35)
136 TIGR00756 PPR pentatricopeptid 98.5 3.4E-07 7.4E-12 46.1 4.2 33 12-44 2-34 (35)
137 PF10037 MRP-S27: Mitochondria 98.5 6.9E-06 1.5E-10 66.3 13.4 124 40-163 61-186 (429)
138 PF13812 PPR_3: Pentatricopept 98.5 3.8E-07 8.2E-12 45.6 4.1 33 11-43 2-34 (34)
139 PF10037 MRP-S27: Mitochondria 98.5 1.8E-05 3.9E-10 63.9 15.4 104 147-250 63-168 (429)
140 PF13812 PPR_3: Pentatricopept 98.5 4.2E-07 9.1E-12 45.4 4.1 33 263-295 2-34 (34)
141 KOG2053 Mitochondrial inherita 98.4 0.001 2.2E-08 57.7 29.3 226 19-251 18-257 (932)
142 KOG3616 Selective LIM binding 98.4 0.00013 2.8E-09 61.9 19.2 232 47-318 591-845 (1636)
143 KOG3616 Selective LIM binding 98.4 7.6E-05 1.6E-09 63.2 17.2 109 122-243 739-847 (1636)
144 KOG2053 Mitochondrial inherita 98.4 0.0014 3E-08 56.9 26.5 224 56-292 20-256 (932)
145 KOG3617 WD40 and TPR repeat-co 98.3 0.00018 3.9E-09 61.7 18.8 211 9-247 756-994 (1416)
146 PF08579 RPM2: Mitochondrial r 98.3 1.7E-05 3.7E-10 50.4 9.8 77 51-127 31-116 (120)
147 TIGR02795 tol_pal_ybgF tol-pal 98.3 5E-05 1.1E-09 50.7 13.1 97 13-109 5-105 (119)
148 TIGR02795 tol_pal_ybgF tol-pal 98.3 7.8E-05 1.7E-09 49.7 13.7 98 47-144 4-105 (119)
149 KOG1127 TPR repeat-containing 98.3 0.00066 1.4E-08 59.5 21.4 164 11-178 493-658 (1238)
150 PF08579 RPM2: Mitochondrial r 98.3 2.5E-05 5.5E-10 49.6 9.8 74 88-161 33-115 (120)
151 PF14938 SNAP: Soluble NSF att 98.2 9.7E-05 2.1E-09 57.6 14.5 183 123-309 43-247 (282)
152 cd00189 TPR Tetratricopeptide 98.2 6.3E-05 1.4E-09 47.7 11.6 93 119-213 4-96 (100)
153 PF12895 Apc3: Anaphase-promot 98.2 5.1E-06 1.1E-10 51.6 5.9 9 27-35 6-14 (84)
154 PF01535 PPR: PPR repeat; Int 98.2 2.8E-06 6E-11 41.3 3.6 29 12-40 2-30 (31)
155 PF05843 Suf: Suppressor of fo 98.2 7.1E-05 1.5E-09 58.1 12.9 132 152-290 3-135 (280)
156 PF12895 Apc3: Anaphase-promot 98.2 5.9E-06 1.3E-10 51.3 5.7 8 63-70 7-14 (84)
157 PLN03088 SGT1, suppressor of 98.2 9.1E-05 2E-09 59.6 13.8 91 157-249 9-99 (356)
158 PF05843 Suf: Suppressor of fo 98.2 0.00017 3.6E-09 56.1 14.8 129 47-178 3-135 (280)
159 PF14938 SNAP: Soluble NSF att 98.2 0.00017 3.7E-09 56.2 15.0 24 13-36 38-61 (282)
160 KOG0550 Molecular chaperone (D 98.2 0.00087 1.9E-08 53.0 18.2 279 17-308 56-368 (486)
161 KOG1127 TPR repeat-containing 98.2 0.00042 9.1E-09 60.7 17.9 183 60-249 473-659 (1238)
162 PRK15363 pathogenicity island 98.2 0.00044 9.5E-09 47.5 14.7 91 51-143 41-131 (157)
163 PLN03088 SGT1, suppressor of 98.2 0.00018 3.9E-09 58.0 14.9 94 16-111 8-101 (356)
164 PF01535 PPR: PPR repeat; Int 98.2 3.5E-06 7.6E-11 40.9 3.4 30 264-293 2-31 (31)
165 PRK15363 pathogenicity island 98.1 0.00014 2.9E-09 49.9 11.9 95 83-179 38-132 (157)
166 CHL00033 ycf3 photosystem I as 98.1 0.00011 2.4E-09 52.4 12.3 96 185-288 35-139 (168)
167 CHL00033 ycf3 photosystem I as 98.1 0.00013 2.9E-09 52.1 12.4 81 45-126 35-117 (168)
168 KOG0553 TPR repeat-containing 98.1 5E-05 1.1E-09 57.1 10.2 93 159-255 90-182 (304)
169 KOG1914 mRNA cleavage and poly 98.1 0.0034 7.3E-08 51.6 21.7 187 61-249 309-501 (656)
170 PRK10866 outer membrane biogen 98.1 0.002 4.3E-08 48.9 20.3 184 44-247 31-239 (243)
171 PRK02603 photosystem I assembl 98.1 0.00049 1.1E-08 49.3 14.8 91 44-135 34-126 (172)
172 PRK02603 photosystem I assembl 98.1 0.00041 8.9E-09 49.7 14.1 91 79-170 34-126 (172)
173 PRK10153 DNA-binding transcrip 98.0 0.0016 3.5E-08 55.1 19.0 138 110-250 332-483 (517)
174 PF06239 ECSIT: Evolutionarily 98.0 0.0014 3E-08 47.5 15.3 36 200-235 118-153 (228)
175 PRK10866 outer membrane biogen 98.0 0.0038 8.2E-08 47.4 19.8 54 157-210 182-237 (243)
176 PF13525 YfiO: Outer membrane 98.0 0.0015 3.1E-08 48.3 15.7 60 85-144 10-71 (203)
177 COG4235 Cytochrome c biogenesi 98.0 0.00098 2.1E-08 50.6 14.4 112 184-306 155-269 (287)
178 KOG0553 TPR repeat-containing 97.9 0.00028 6.2E-09 53.2 11.4 101 55-159 91-191 (304)
179 PF12688 TPR_5: Tetratrico pep 97.9 0.0018 4E-08 42.8 14.1 54 90-143 11-66 (120)
180 PF06239 ECSIT: Evolutionarily 97.9 0.00024 5.2E-09 51.2 10.5 103 78-199 45-152 (228)
181 KOG1130 Predicted G-alpha GTPa 97.9 8.1E-05 1.8E-09 58.6 8.3 128 187-316 197-334 (639)
182 PRK10153 DNA-binding transcrip 97.9 0.0033 7.2E-08 53.2 18.1 143 76-223 333-489 (517)
183 PF14559 TPR_19: Tetratricopep 97.9 6.7E-05 1.5E-09 44.3 6.0 52 22-74 3-54 (68)
184 PF13525 YfiO: Outer membrane 97.8 0.0057 1.2E-07 45.1 18.0 59 16-74 11-71 (203)
185 PF12688 TPR_5: Tetratrico pep 97.8 0.0027 5.8E-08 42.0 13.5 91 156-248 7-103 (120)
186 KOG1130 Predicted G-alpha GTPa 97.8 0.00029 6.4E-09 55.6 10.3 270 18-290 25-343 (639)
187 PF13414 TPR_11: TPR repeat; P 97.8 0.00022 4.8E-09 42.2 7.7 62 115-177 3-65 (69)
188 PF13432 TPR_16: Tetratricopep 97.8 0.00023 5E-09 41.5 7.6 56 88-144 5-60 (65)
189 PF13432 TPR_16: Tetratricopep 97.8 0.00016 3.5E-09 42.2 6.8 58 16-74 3-60 (65)
190 PF13414 TPR_11: TPR repeat; P 97.8 0.00025 5.5E-09 42.0 7.5 63 185-248 3-66 (69)
191 COG4235 Cytochrome c biogenesi 97.8 0.0041 8.9E-08 47.4 15.2 102 147-250 153-257 (287)
192 PF14559 TPR_19: Tetratricopep 97.8 0.00018 3.9E-09 42.5 6.6 18 122-139 32-49 (68)
193 KOG0550 Molecular chaperone (D 97.7 0.0067 1.4E-07 48.2 15.7 254 51-317 55-341 (486)
194 PF12921 ATP13: Mitochondrial 97.7 0.0017 3.7E-08 43.4 10.6 91 220-310 2-101 (126)
195 PF13424 TPR_12: Tetratricopep 97.7 0.00012 2.6E-09 44.6 4.9 67 221-290 6-74 (78)
196 PRK10803 tol-pal system protei 97.6 0.0024 5.3E-08 48.9 12.5 98 47-144 145-246 (263)
197 KOG2796 Uncharacterized conser 97.6 0.0039 8.5E-08 46.5 12.6 150 25-182 164-318 (366)
198 PF03704 BTAD: Bacterial trans 97.6 0.0077 1.7E-07 41.8 13.8 59 118-177 65-123 (146)
199 PF04840 Vps16_C: Vps16, C-ter 97.6 0.024 5.1E-07 44.9 23.3 24 12-35 2-25 (319)
200 PRK10803 tol-pal system protei 97.6 0.0041 9E-08 47.6 12.9 98 116-214 144-246 (263)
201 KOG2796 Uncharacterized conser 97.6 0.019 4E-07 43.0 19.6 130 84-214 181-315 (366)
202 PF13371 TPR_9: Tetratricopept 97.5 0.0013 2.8E-08 39.4 7.8 65 227-301 2-66 (73)
203 PF13281 DUF4071: Domain of un 97.5 0.037 8.1E-07 44.4 19.1 166 82-249 143-334 (374)
204 COG4700 Uncharacterized protei 97.4 0.021 4.5E-07 40.4 18.3 153 52-208 63-216 (251)
205 COG4700 Uncharacterized protei 97.4 0.022 4.7E-07 40.3 18.0 133 112-248 86-225 (251)
206 PF03704 BTAD: Bacterial trans 97.4 0.0033 7.1E-08 43.7 10.0 72 82-154 64-140 (146)
207 KOG2280 Vacuolar assembly/sort 97.4 0.072 1.6E-06 46.0 21.2 104 189-318 688-791 (829)
208 PRK15331 chaperone protein Sic 97.4 0.012 2.6E-07 40.9 12.0 87 90-178 47-133 (165)
209 PF13371 TPR_9: Tetratricopept 97.4 0.002 4.4E-08 38.5 7.7 56 18-74 3-58 (73)
210 PF13424 TPR_12: Tetratricopep 97.3 0.0019 4.2E-08 39.2 7.0 62 116-177 6-73 (78)
211 KOG2041 WD40 repeat protein [G 97.3 0.033 7.1E-07 47.7 15.6 53 184-245 851-903 (1189)
212 PRK15331 chaperone protein Sic 97.3 0.024 5.3E-07 39.4 12.4 89 54-144 46-134 (165)
213 KOG2041 WD40 repeat protein [G 97.2 0.045 9.8E-07 46.9 15.8 206 42-288 689-904 (1189)
214 PF12921 ATP13: Mitochondrial 97.2 0.014 3.1E-07 39.0 10.2 46 112-157 49-95 (126)
215 PF04053 Coatomer_WDAD: Coatom 97.1 0.073 1.6E-06 44.3 15.8 156 89-287 270-427 (443)
216 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0089 1.9E-07 48.6 10.2 98 183-293 73-176 (453)
217 smart00299 CLH Clathrin heavy 97.1 0.047 1E-06 37.6 15.3 125 154-308 11-136 (140)
218 PF13281 DUF4071: Domain of un 97.1 0.11 2.4E-06 41.8 19.7 172 114-291 140-334 (374)
219 KOG1538 Uncharacterized conser 97.0 0.18 3.8E-06 43.2 18.2 264 6-291 552-846 (1081)
220 COG4105 ComL DNA uptake lipopr 97.0 0.09 2E-06 39.5 16.5 67 225-298 172-238 (254)
221 PF07079 DUF1347: Protein of u 97.0 0.15 3.2E-06 41.6 25.3 135 20-159 16-176 (549)
222 COG3898 Uncharacterized membra 96.9 0.16 3.4E-06 40.7 27.1 185 23-214 97-292 (531)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.056 1.2E-06 44.2 13.0 66 8-74 73-141 (453)
224 KOG0543 FKBP-type peptidyl-pro 96.9 0.04 8.8E-07 44.0 11.8 97 81-179 258-355 (397)
225 PF04053 Coatomer_WDAD: Coatom 96.9 0.047 1E-06 45.4 12.8 157 18-210 269-427 (443)
226 KOG0543 FKBP-type peptidyl-pro 96.8 0.073 1.6E-06 42.6 12.8 97 115-213 257-354 (397)
227 COG1729 Uncharacterized protei 96.8 0.098 2.1E-06 39.6 12.7 100 186-291 143-244 (262)
228 PF04840 Vps16_C: Vps16, C-ter 96.7 0.22 4.9E-06 39.5 24.7 109 152-287 179-287 (319)
229 KOG2610 Uncharacterized conser 96.7 0.12 2.6E-06 40.4 12.8 153 22-176 115-273 (491)
230 PF10300 DUF3808: Protein of u 96.6 0.39 8.4E-06 40.7 17.4 180 27-213 174-375 (468)
231 PF13512 TPR_18: Tetratricopep 96.6 0.13 2.8E-06 35.0 11.7 54 21-74 21-76 (142)
232 COG1729 Uncharacterized protei 96.5 0.091 2E-06 39.8 11.1 87 58-144 154-244 (262)
233 PF08631 SPO22: Meiosis protei 96.4 0.31 6.8E-06 38.1 24.9 224 20-247 3-273 (278)
234 KOG1941 Acetylcholine receptor 96.4 0.34 7.4E-06 38.4 15.5 228 20-248 16-274 (518)
235 KOG1941 Acetylcholine receptor 96.4 0.21 4.6E-06 39.6 12.7 227 57-289 18-273 (518)
236 COG3118 Thioredoxin domain-con 96.4 0.3 6.5E-06 37.6 17.6 152 122-282 141-292 (304)
237 COG3118 Thioredoxin domain-con 96.4 0.31 6.6E-06 37.5 17.2 49 92-141 146-194 (304)
238 PF10602 RPN7: 26S proteasome 96.4 0.054 1.2E-06 38.9 9.1 102 186-289 37-140 (177)
239 PF10300 DUF3808: Protein of u 96.4 0.52 1.1E-05 39.9 16.7 157 90-249 198-376 (468)
240 KOG4555 TPR repeat-containing 96.4 0.16 3.4E-06 33.9 11.3 91 19-110 52-145 (175)
241 KOG2280 Vacuolar assembly/sort 96.4 0.62 1.3E-05 40.7 19.5 111 151-287 685-795 (829)
242 KOG1585 Protein required for f 96.3 0.29 6.3E-06 36.6 17.4 195 47-244 33-251 (308)
243 KOG1585 Protein required for f 96.3 0.3 6.5E-06 36.5 13.6 207 81-316 32-246 (308)
244 PF04184 ST7: ST7 protein; In 96.3 0.53 1.1E-05 39.2 16.4 86 186-277 260-346 (539)
245 KOG3941 Intermediate in Toll s 96.3 0.064 1.4E-06 40.8 9.0 72 94-165 86-173 (406)
246 COG4105 ComL DNA uptake lipopr 96.3 0.33 7.2E-06 36.6 20.8 71 55-125 44-116 (254)
247 PF09205 DUF1955: Domain of un 96.2 0.2 4.2E-06 33.5 14.3 66 185-251 86-151 (161)
248 KOG2114 Vacuolar assembly/sort 96.2 0.81 1.8E-05 40.5 17.2 213 12-249 336-550 (933)
249 PF13428 TPR_14: Tetratricopep 96.1 0.03 6.5E-07 29.5 5.1 39 263-303 2-41 (44)
250 PF13170 DUF4003: Protein of u 96.1 0.52 1.1E-05 37.1 14.4 23 28-50 80-102 (297)
251 PF09205 DUF1955: Domain of un 96.1 0.24 5.2E-06 33.1 14.7 61 154-215 90-150 (161)
252 KOG3941 Intermediate in Toll s 96.0 0.47 1E-05 36.4 12.5 104 113-235 65-173 (406)
253 PF13428 TPR_14: Tetratricopep 96.0 0.037 8E-07 29.1 5.1 27 118-144 4-30 (44)
254 KOG2114 Vacuolar assembly/sort 95.9 0.44 9.6E-06 42.1 13.5 179 47-246 336-516 (933)
255 PF08631 SPO22: Meiosis protei 95.8 0.65 1.4E-05 36.3 22.3 229 55-289 3-273 (278)
256 COG3629 DnrI DNA-binding trans 95.7 0.23 5.1E-06 38.2 10.2 80 114-194 152-236 (280)
257 PF13176 TPR_7: Tetratricopept 95.7 0.029 6.2E-07 28.0 3.8 27 264-290 1-27 (36)
258 COG3898 Uncharacterized membra 95.7 0.91 2E-05 36.6 24.2 248 48-315 85-347 (531)
259 PF07035 Mic1: Colon cancer-as 95.6 0.51 1.1E-05 33.3 13.0 135 30-178 14-148 (167)
260 KOG4555 TPR repeat-containing 95.6 0.37 8E-06 32.2 9.2 91 89-180 52-145 (175)
261 smart00299 CLH Clathrin heavy 95.6 0.47 1E-05 32.6 16.2 41 51-92 13-53 (140)
262 KOG1538 Uncharacterized conser 95.5 1.4 3.1E-05 38.0 18.3 209 28-254 618-851 (1081)
263 KOG4570 Uncharacterized conser 95.5 0.4 8.7E-06 37.2 10.4 98 114-213 63-163 (418)
264 PF13176 TPR_7: Tetratricopept 95.4 0.05 1.1E-06 27.1 4.0 27 222-248 1-27 (36)
265 PRK11906 transcriptional regul 95.4 1.3 2.8E-05 36.7 16.6 145 96-245 274-432 (458)
266 PF00637 Clathrin: Region in C 95.4 0.0022 4.9E-08 44.3 -1.4 84 156-246 13-96 (143)
267 COG3629 DnrI DNA-binding trans 95.3 0.36 7.8E-06 37.2 10.0 81 150-231 153-238 (280)
268 COG5107 RNA14 Pre-mRNA 3'-end 95.3 1.4 3.1E-05 36.3 18.6 145 81-230 398-545 (660)
269 PF10602 RPN7: 26S proteasome 95.2 0.79 1.7E-05 33.0 11.4 96 152-247 38-140 (177)
270 PF02259 FAT: FAT domain; Int 95.1 1.4 3.1E-05 35.7 22.4 55 16-74 4-58 (352)
271 COG0457 NrfG FOG: TPR repeat [ 95.1 1 2.2E-05 33.6 26.3 224 24-250 37-266 (291)
272 PF09613 HrpB1_HrpK: Bacterial 95.1 0.76 1.6E-05 32.1 12.9 86 161-250 21-107 (160)
273 KOG2610 Uncharacterized conser 95.0 1.3 2.9E-05 34.9 18.8 160 90-251 113-278 (491)
274 KOG4570 Uncharacterized conser 95.0 0.93 2E-05 35.4 11.1 104 40-145 59-165 (418)
275 KOG1920 IkappaB kinase complex 94.9 3.3 7.2E-05 38.6 19.6 114 147-287 932-1051(1265)
276 PF13512 TPR_18: Tetratricopep 94.9 0.79 1.7E-05 31.3 12.7 82 46-127 11-94 (142)
277 PF13929 mRNA_stabil: mRNA sta 94.8 1.4 3.1E-05 34.1 12.2 138 58-195 141-288 (292)
278 COG4649 Uncharacterized protei 94.6 1.1 2.4E-05 31.7 13.6 139 44-183 58-200 (221)
279 PF00515 TPR_1: Tetratricopept 94.4 0.11 2.3E-06 25.3 3.7 29 263-291 2-30 (34)
280 PF09613 HrpB1_HrpK: Bacterial 94.3 1.2 2.6E-05 31.1 13.0 20 55-74 54-73 (160)
281 PRK11906 transcriptional regul 94.2 2.8 6E-05 34.9 16.7 162 46-210 252-432 (458)
282 COG5107 RNA14 Pre-mRNA 3'-end 94.2 2.7 5.9E-05 34.8 21.7 146 150-306 397-544 (660)
283 PF13431 TPR_17: Tetratricopep 94.2 0.094 2E-06 25.7 3.1 21 114-134 12-32 (34)
284 COG4649 Uncharacterized protei 94.1 1.4 3.1E-05 31.2 13.4 139 79-218 58-200 (221)
285 PF13170 DUF4003: Protein of u 94.1 2.4 5.1E-05 33.5 20.5 138 96-235 78-232 (297)
286 COG0457 NrfG FOG: TPR repeat [ 94.1 1.8 4E-05 32.2 28.6 224 58-291 36-265 (291)
287 PF07035 Mic1: Colon cancer-as 94.0 1.5 3.3E-05 31.0 14.6 26 71-96 20-45 (167)
288 PF02284 COX5A: Cytochrome c o 93.8 1 2.3E-05 28.5 9.3 60 168-228 28-87 (108)
289 PF13374 TPR_10: Tetratricopep 93.7 0.18 4E-06 25.8 3.9 28 263-290 3-30 (42)
290 PF07719 TPR_2: Tetratricopept 93.6 0.22 4.8E-06 24.0 3.9 29 263-291 2-30 (34)
291 PF04184 ST7: ST7 protein; In 93.5 4 8.8E-05 34.3 19.3 62 152-213 261-323 (539)
292 COG4785 NlpI Lipoprotein NlpI, 93.4 2.4 5.2E-05 31.4 15.9 177 61-250 81-267 (297)
293 PF13431 TPR_17: Tetratricopep 93.4 0.13 2.7E-06 25.3 2.7 21 44-64 12-32 (34)
294 PF11207 DUF2989: Protein of u 93.3 1.6 3.5E-05 31.8 9.1 81 196-282 118-198 (203)
295 PF07719 TPR_2: Tetratricopept 93.3 0.28 6.1E-06 23.7 4.0 28 222-249 3-30 (34)
296 TIGR03504 FimV_Cterm FimV C-te 93.3 0.2 4.3E-06 26.3 3.4 26 267-292 4-29 (44)
297 PF07163 Pex26: Pex26 protein; 93.2 2.2 4.8E-05 32.8 10.0 91 48-138 86-181 (309)
298 PF00515 TPR_1: Tetratricopept 93.1 0.4 8.6E-06 23.2 4.4 27 47-73 3-29 (34)
299 PF11207 DUF2989: Protein of u 92.9 2.1 4.5E-05 31.3 9.1 79 125-205 117-198 (203)
300 PRK09687 putative lyase; Provi 92.8 3.8 8.3E-05 32.1 28.6 235 43-309 35-279 (280)
301 cd00923 Cyt_c_Oxidase_Va Cytoc 92.8 1.5 3.3E-05 27.5 7.2 49 25-73 22-70 (103)
302 COG4785 NlpI Lipoprotein NlpI, 92.5 3.3 7.2E-05 30.7 16.4 187 93-292 78-267 (297)
303 PF13374 TPR_10: Tetratricopep 92.4 0.48 1E-05 24.1 4.4 28 116-143 3-30 (42)
304 KOG0276 Vesicle coat complex C 92.4 3.8 8.2E-05 35.3 11.1 99 161-287 648-746 (794)
305 PRK15180 Vi polysaccharide bio 92.3 2.6 5.6E-05 35.2 10.0 90 123-214 331-420 (831)
306 KOG2471 TPR repeat-containing 92.3 6.1 0.00013 33.2 17.9 294 11-309 18-381 (696)
307 PF13174 TPR_6: Tetratricopept 92.1 0.3 6.5E-06 23.3 3.1 27 265-291 3-29 (33)
308 COG4455 ImpE Protein of avirul 91.8 2.2 4.8E-05 31.5 8.2 77 12-89 3-81 (273)
309 COG2976 Uncharacterized protei 91.6 4 8.7E-05 29.6 14.3 92 192-292 96-189 (207)
310 TIGR02561 HrpB1_HrpK type III 91.5 3.4 7.3E-05 28.5 11.5 20 90-109 54-73 (153)
311 PF02284 COX5A: Cytochrome c o 91.5 2.5 5.3E-05 26.9 8.5 47 28-74 28-74 (108)
312 KOG1920 IkappaB kinase complex 91.4 13 0.00028 35.1 20.4 86 188-290 942-1027(1265)
313 PF00637 Clathrin: Region in C 91.3 0.086 1.9E-06 36.4 0.8 54 16-69 13-66 (143)
314 PF07079 DUF1347: Protein of u 91.3 7.7 0.00017 32.3 20.3 138 55-197 16-179 (549)
315 PRK15180 Vi polysaccharide bio 91.3 8 0.00017 32.5 13.3 124 18-145 297-421 (831)
316 PF07163 Pex26: Pex26 protein; 91.1 5.2 0.00011 30.9 9.7 90 84-173 87-181 (309)
317 KOG1586 Protein required for f 90.9 5.5 0.00012 30.0 13.0 59 191-249 160-224 (288)
318 PF13181 TPR_8: Tetratricopept 90.9 0.78 1.7E-05 22.1 3.9 29 263-291 2-30 (34)
319 PF13181 TPR_8: Tetratricopept 90.7 0.91 2E-05 21.8 4.1 28 222-249 3-30 (34)
320 COG2909 MalT ATP-dependent tra 90.5 13 0.00029 33.8 22.1 265 16-287 366-684 (894)
321 PF02259 FAT: FAT domain; Int 90.5 8.3 0.00018 31.3 19.3 69 218-290 144-212 (352)
322 PF07721 TPR_4: Tetratricopept 89.9 0.56 1.2E-05 21.2 2.6 23 264-286 3-25 (26)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 89.8 3.5 7.6E-05 26.0 9.1 45 168-212 25-69 (103)
324 KOG4648 Uncharacterized conser 89.6 2.3 5E-05 33.8 7.1 89 158-248 105-193 (536)
325 COG2976 Uncharacterized protei 89.4 6.6 0.00014 28.6 13.2 131 116-250 55-189 (207)
326 KOG4234 TPR repeat-containing 89.2 7 0.00015 28.7 9.3 90 123-214 103-197 (271)
327 PF13762 MNE1: Mitochondrial s 89.0 5.8 0.00013 27.4 9.5 99 34-132 26-132 (145)
328 KOG4234 TPR repeat-containing 88.9 7.5 0.00016 28.5 9.2 91 54-145 104-198 (271)
329 COG4455 ImpE Protein of avirul 88.7 6.4 0.00014 29.3 8.3 51 89-140 10-60 (273)
330 KOG1550 Extracellular protein 88.3 17 0.00037 31.9 21.8 180 26-215 228-427 (552)
331 KOG4648 Uncharacterized conser 88.2 3.3 7.1E-05 33.0 7.1 90 88-179 105-194 (536)
332 TIGR03504 FimV_Cterm FimV C-te 88.0 2 4.3E-05 22.6 4.2 21 122-142 6-26 (44)
333 PF10345 Cohesin_load: Cohesin 87.8 19 0.00042 32.0 19.7 191 99-290 40-253 (608)
334 TIGR02561 HrpB1_HrpK type III 87.7 7.3 0.00016 27.0 12.4 49 163-213 23-72 (153)
335 PF10579 Rapsyn_N: Rapsyn N-te 87.5 1.9 4.2E-05 25.9 4.3 54 226-285 13-66 (80)
336 KOG1550 Extracellular protein 87.0 21 0.00045 31.4 22.3 180 61-250 228-427 (552)
337 KOG1464 COP9 signalosome, subu 86.6 13 0.00028 28.7 21.8 268 4-287 20-328 (440)
338 COG2909 MalT ATP-dependent tra 86.5 26 0.00056 32.1 22.7 50 267-316 623-678 (894)
339 COG0735 Fur Fe2+/Zn2+ uptake r 85.9 7.4 0.00016 27.0 7.3 66 241-314 7-72 (145)
340 KOG2908 26S proteasome regulat 85.6 12 0.00026 29.9 8.7 85 226-314 81-174 (380)
341 KOG4077 Cytochrome c oxidase, 85.5 8.6 0.00019 25.7 6.8 39 173-211 72-110 (149)
342 PF06552 TOM20_plant: Plant sp 85.4 11 0.00025 27.0 9.6 41 131-179 96-136 (186)
343 KOG0276 Vesicle coat complex C 85.3 23 0.0005 30.9 10.9 133 12-177 616-748 (794)
344 PF07575 Nucleopor_Nup85: Nup8 85.3 18 0.00039 31.9 11.0 24 232-255 507-530 (566)
345 COG1747 Uncharacterized N-term 85.3 23 0.00049 30.3 23.4 179 44-230 65-249 (711)
346 PF08424 NRDE-2: NRDE-2, neces 84.4 20 0.00043 28.9 15.6 125 167-293 48-185 (321)
347 PF13929 mRNA_stabil: mRNA sta 84.0 18 0.0004 28.3 15.9 139 164-309 142-290 (292)
348 PF08424 NRDE-2: NRDE-2, neces 83.7 21 0.00046 28.7 16.3 117 133-251 49-185 (321)
349 KOG2066 Vacuolar assembly/sort 83.7 33 0.00072 30.9 20.7 124 17-143 363-533 (846)
350 KOG2063 Vacuolar assembly/sort 83.1 40 0.00086 31.3 14.5 18 20-37 356-373 (877)
351 PF11848 DUF3368: Domain of un 82.0 6 0.00013 21.2 4.9 37 270-306 10-46 (48)
352 COG3947 Response regulator con 81.8 23 0.00051 27.8 15.9 69 223-299 282-355 (361)
353 KOG2659 LisH motif-containing 81.7 13 0.00027 27.9 7.2 98 183-289 24-130 (228)
354 smart00028 TPR Tetratricopepti 81.4 3.1 6.6E-05 18.8 3.1 29 263-291 2-30 (34)
355 cd00280 TRFH Telomeric Repeat 81.1 8.6 0.00019 27.7 6.0 41 267-310 116-156 (200)
356 KOG4077 Cytochrome c oxidase, 80.7 14 0.00031 24.7 7.3 43 101-143 70-112 (149)
357 COG3947 Response regulator con 80.5 26 0.00057 27.5 14.8 59 152-211 281-339 (361)
358 PF11663 Toxin_YhaV: Toxin wit 80.2 2.4 5.2E-05 28.5 2.9 34 272-307 105-138 (140)
359 PF10579 Rapsyn_N: Rapsyn N-te 80.0 11 0.00024 22.8 5.7 16 128-143 19-34 (80)
360 PF06552 TOM20_plant: Plant sp 79.8 20 0.00044 25.8 10.1 28 201-230 96-123 (186)
361 PRK10564 maltose regulon perip 79.6 4.5 9.9E-05 31.6 4.7 43 263-305 258-300 (303)
362 PF02184 HAT: HAT (Half-A-TPR) 79.5 5.5 0.00012 19.2 3.3 27 277-305 2-28 (32)
363 KOG2066 Vacuolar assembly/sort 79.3 49 0.0011 30.0 12.0 153 51-213 362-533 (846)
364 KOG4507 Uncharacterized conser 79.2 23 0.00049 30.9 8.7 86 58-144 620-705 (886)
365 PRK09687 putative lyase; Provi 77.1 34 0.00074 27.0 26.9 219 8-249 35-263 (280)
366 KOG1308 Hsp70-interacting prot 77.0 2.6 5.6E-05 33.5 2.7 90 162-254 126-216 (377)
367 KOG4507 Uncharacterized conser 76.8 24 0.00052 30.7 8.3 99 92-192 619-717 (886)
368 PF11663 Toxin_YhaV: Toxin wit 76.3 3.5 7.7E-05 27.8 2.9 33 231-272 106-138 (140)
369 PF14689 SPOB_a: Sensor_kinase 75.9 9.6 0.00021 21.8 4.3 25 224-248 27-51 (62)
370 PHA02875 ankyrin repeat protei 75.8 46 0.001 27.9 12.4 79 18-104 7-89 (413)
371 PF14853 Fis1_TPR_C: Fis1 C-te 75.5 11 0.00025 20.7 5.5 40 266-307 5-44 (53)
372 PF12862 Apc5: Anaphase-promot 75.3 18 0.00038 22.8 6.1 75 231-305 9-85 (94)
373 KOG4567 GTPase-activating prot 75.1 24 0.00052 27.9 7.3 43 171-213 264-306 (370)
374 PF07575 Nucleopor_Nup85: Nup8 74.6 15 0.00032 32.4 7.0 33 274-306 507-539 (566)
375 COG1747 Uncharacterized N-term 74.4 56 0.0012 28.2 23.6 167 77-250 63-235 (711)
376 KOG1839 Uncharacterized protei 73.9 91 0.002 30.3 12.0 162 125-286 942-1123(1236)
377 COG5159 RPN6 26S proteasome re 73.3 43 0.00093 26.3 14.8 159 15-173 8-188 (421)
378 cd00280 TRFH Telomeric Repeat 72.7 34 0.00073 24.9 7.8 21 88-108 119-139 (200)
379 PF11846 DUF3366: Domain of un 72.4 34 0.00075 25.0 7.6 33 217-249 141-173 (193)
380 PRK09462 fur ferric uptake reg 72.2 12 0.00025 26.1 4.9 61 36-97 8-69 (148)
381 PF11848 DUF3368: Domain of un 72.1 13 0.00028 19.9 4.8 32 21-52 13-44 (48)
382 COG5108 RPO41 Mitochondrial DN 72.0 42 0.00091 29.9 8.7 74 15-91 33-114 (1117)
383 PF14689 SPOB_a: Sensor_kinase 72.0 16 0.00035 20.9 4.6 20 122-141 30-49 (62)
384 PF11846 DUF3366: Domain of un 71.8 35 0.00076 25.0 7.6 32 147-178 141-172 (193)
385 PF10366 Vps39_1: Vacuolar sor 71.8 25 0.00054 22.9 7.2 27 264-290 41-67 (108)
386 PRK11639 zinc uptake transcrip 71.6 34 0.00074 24.5 7.6 62 246-315 17-78 (169)
387 PF04097 Nic96: Nup93/Nic96; 71.5 77 0.0017 28.5 20.1 43 15-58 116-158 (613)
388 KOG1839 Uncharacterized protei 71.2 89 0.0019 30.3 11.1 157 159-316 941-1118(1236)
389 KOG0890 Protein kinase of the 71.1 1.4E+02 0.0031 31.4 18.6 120 50-176 1388-1509(2382)
390 COG0735 Fur Fe2+/Zn2+ uptake r 70.9 32 0.0007 23.9 7.3 25 121-145 26-50 (145)
391 PF11817 Foie-gras_1: Foie gra 70.3 34 0.00073 26.4 7.4 66 222-289 180-245 (247)
392 PF11817 Foie-gras_1: Foie gra 69.5 40 0.00088 25.9 7.7 57 190-246 183-244 (247)
393 PHA02875 ankyrin repeat protei 69.2 68 0.0015 26.9 11.5 196 3-220 23-230 (413)
394 PF09454 Vps23_core: Vps23 cor 68.7 20 0.00044 20.7 4.9 50 260-310 6-55 (65)
395 PF10345 Cohesin_load: Cohesin 68.6 89 0.0019 28.0 28.3 164 12-176 61-251 (608)
396 PF12862 Apc5: Anaphase-promot 68.6 26 0.00057 22.0 6.5 55 20-74 8-70 (94)
397 KOG0686 COP9 signalosome, subu 68.4 69 0.0015 26.7 15.0 160 46-213 151-332 (466)
398 PRK10564 maltose regulon perip 68.4 17 0.00037 28.6 5.3 37 117-153 259-295 (303)
399 COG0790 FOG: TPR repeat, SEL1 68.3 57 0.0012 25.7 21.4 86 202-301 172-276 (292)
400 KOG0890 Protein kinase of the 68.2 1.6E+02 0.0036 31.0 23.8 62 220-291 1670-1731(2382)
401 COG5108 RPO41 Mitochondrial DN 67.7 68 0.0015 28.7 9.0 73 50-125 33-113 (1117)
402 KOG0376 Serine-threonine phosp 67.4 26 0.00056 29.6 6.4 50 197-248 16-66 (476)
403 PF04190 DUF410: Protein of un 66.9 59 0.0013 25.3 18.3 25 149-173 89-113 (260)
404 PRK10941 hypothetical protein; 66.3 62 0.0013 25.4 9.9 77 224-308 185-262 (269)
405 COG5159 RPN6 26S proteasome re 66.1 64 0.0014 25.5 13.9 49 86-134 9-64 (421)
406 cd08819 CARD_MDA5_2 Caspase ac 66.1 29 0.00063 21.5 7.2 36 57-97 48-83 (88)
407 smart00386 HAT HAT (Half-A-TPR 65.9 12 0.00027 17.2 3.6 29 276-305 1-29 (33)
408 PRK10941 hypothetical protein; 65.7 64 0.0014 25.3 10.7 55 157-212 188-242 (269)
409 PF04090 RNA_pol_I_TF: RNA pol 65.5 49 0.0011 24.5 6.9 47 13-60 44-91 (199)
410 KOG2297 Predicted translation 64.2 73 0.0016 25.4 13.4 16 187-202 323-338 (412)
411 cd07153 Fur_like Ferric uptake 63.9 27 0.00059 22.9 5.2 49 267-315 5-53 (116)
412 PF09670 Cas_Cas02710: CRISPR- 63.6 86 0.0019 26.1 11.8 56 123-179 139-198 (379)
413 PF09670 Cas_Cas02710: CRISPR- 63.4 87 0.0019 26.1 11.3 56 18-74 139-198 (379)
414 PF02607 B12-binding_2: B12 bi 63.0 25 0.00053 21.1 4.5 42 272-313 11-52 (79)
415 cd07153 Fur_like Ferric uptake 62.9 26 0.00056 23.0 4.9 44 16-59 6-49 (116)
416 COG5187 RPN7 26S proteasome re 62.4 77 0.0017 25.1 10.6 118 184-306 114-236 (412)
417 PF01475 FUR: Ferric uptake re 62.3 23 0.0005 23.5 4.6 49 266-314 11-59 (120)
418 PF10366 Vps39_1: Vacuolar sor 62.1 33 0.00072 22.3 5.1 27 47-73 41-67 (108)
419 KOG0376 Serine-threonine phosp 61.8 36 0.00077 28.8 6.2 105 16-125 10-115 (476)
420 KOG2063 Vacuolar assembly/sort 61.7 1.4E+02 0.0031 28.0 20.4 117 11-127 505-638 (877)
421 KOG4567 GTPase-activating prot 60.9 46 0.001 26.5 6.3 72 30-106 263-344 (370)
422 PF09986 DUF2225: Uncharacteri 60.3 71 0.0015 24.0 11.7 69 222-292 120-195 (214)
423 PF13762 MNE1: Mitochondrial s 60.1 56 0.0012 22.7 11.6 81 83-163 42-128 (145)
424 KOG4642 Chaperone-dependent E3 60.0 77 0.0017 24.3 11.1 117 55-175 20-142 (284)
425 KOG1308 Hsp70-interacting prot 59.7 8.3 0.00018 30.8 2.3 87 58-146 127-213 (377)
426 KOG1258 mRNA processing protei 59.2 1.3E+02 0.0027 26.6 29.4 88 21-109 90-180 (577)
427 PF01475 FUR: Ferric uptake re 58.5 23 0.0005 23.5 4.1 43 16-58 13-55 (120)
428 TIGR02508 type_III_yscG type I 58.0 48 0.001 21.3 8.5 50 159-214 48-97 (115)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 56.9 58 0.0013 21.9 9.4 44 238-287 81-124 (126)
430 PF09454 Vps23_core: Vps23 cor 56.8 37 0.00081 19.7 4.9 47 44-91 7-53 (65)
431 KOG1258 mRNA processing protei 56.7 1.4E+02 0.003 26.3 28.2 131 11-144 46-180 (577)
432 cd08819 CARD_MDA5_2 Caspase ac 56.1 47 0.001 20.7 7.0 38 232-281 48-85 (88)
433 PRK12798 chemotaxis protein; R 55.7 1.2E+02 0.0027 25.4 22.0 199 92-299 124-332 (421)
434 KOG0687 26S proteasome regulat 55.2 1.1E+02 0.0024 24.7 11.7 155 129-290 36-209 (393)
435 KOG4642 Chaperone-dependent E3 54.8 96 0.0021 23.9 11.0 118 90-211 20-143 (284)
436 PF09868 DUF2095: Uncharacteri 52.9 64 0.0014 21.2 5.2 40 267-307 66-105 (128)
437 COG5187 RPN7 26S proteasome re 52.5 1.2E+02 0.0025 24.2 13.5 99 148-248 113-220 (412)
438 PF10255 Paf67: RNA polymerase 51.2 39 0.00085 28.2 4.9 64 224-289 126-191 (404)
439 PRK09857 putative transposase; 51.1 1.3E+02 0.0027 24.1 9.2 66 223-296 209-274 (292)
440 KOG1464 COP9 signalosome, subu 50.9 1.2E+02 0.0026 23.8 21.3 162 12-174 67-255 (440)
441 TIGR02508 type_III_yscG type I 50.6 66 0.0014 20.7 8.3 12 91-102 50-61 (115)
442 PF04097 Nic96: Nup93/Nic96; 50.1 2E+02 0.0043 26.0 16.1 29 116-144 325-356 (613)
443 PF04910 Tcf25: Transcriptiona 49.9 1.5E+02 0.0032 24.6 18.9 122 114-248 39-167 (360)
444 COG0790 FOG: TPR repeat, SEL1 49.6 1.3E+02 0.0028 23.7 23.7 49 60-111 92-144 (292)
445 PRK11639 zinc uptake transcrip 49.5 95 0.0021 22.2 7.4 17 129-145 39-55 (169)
446 KOG1166 Mitotic checkpoint ser 48.6 85 0.0018 29.8 7.0 57 197-253 90-147 (974)
447 PF10475 DUF2450: Protein of u 47.8 1.4E+02 0.0031 23.7 10.8 23 121-143 133-155 (291)
448 PF08311 Mad3_BUB1_I: Mad3/BUB 47.5 86 0.0019 21.1 9.5 42 168-209 81-123 (126)
449 PRK09857 putative transposase; 46.4 1.5E+02 0.0033 23.6 9.3 65 188-253 209-273 (292)
450 KOG4814 Uncharacterized conser 46.2 2.3E+02 0.0049 25.6 8.8 85 57-143 366-456 (872)
451 PF00244 14-3-3: 14-3-3 protei 46.0 1.3E+02 0.0029 23.0 12.5 57 51-107 7-64 (236)
452 PRK09462 fur ferric uptake reg 44.5 1.1E+02 0.0023 21.3 7.5 35 95-129 32-66 (148)
453 PF07720 TPR_3: Tetratricopept 44.4 42 0.0009 16.6 3.3 22 265-286 4-25 (36)
454 KOG3636 Uncharacterized conser 44.3 2E+02 0.0043 24.5 8.9 87 109-196 177-271 (669)
455 KOG1586 Protein required for f 44.2 1.5E+02 0.0032 22.9 18.6 25 157-181 161-185 (288)
456 KOG0687 26S proteasome regulat 44.0 1.7E+02 0.0038 23.7 16.2 134 111-248 66-209 (393)
457 PF06957 COPI_C: Coatomer (COP 43.7 1.5E+02 0.0033 25.1 7.1 49 263-311 301-350 (422)
458 KOG3364 Membrane protein invol 43.0 1.1E+02 0.0024 21.1 9.9 23 226-248 77-99 (149)
459 smart00804 TAP_C C-terminal do 42.9 30 0.00064 19.9 2.3 22 24-45 39-61 (63)
460 KOG2422 Uncharacterized conser 41.2 2.6E+02 0.0056 24.9 16.5 156 129-289 252-446 (665)
461 KOG2471 TPR repeat-containing 40.9 2.4E+02 0.0053 24.5 10.3 107 123-231 248-380 (696)
462 PF12926 MOZART2: Mitotic-spin 39.1 96 0.0021 19.3 8.0 43 31-73 29-71 (88)
463 PF02847 MA3: MA3 domain; Int 38.8 1.1E+02 0.0024 19.8 8.8 22 120-141 7-28 (113)
464 PF04762 IKI3: IKI3 family; I 38.6 3.7E+02 0.008 25.9 17.6 30 115-144 812-843 (928)
465 PRK13342 recombination factor 38.6 2.4E+02 0.0053 23.8 19.0 21 129-149 244-264 (413)
466 COG5191 Uncharacterized conser 38.1 1.5E+02 0.0033 23.8 6.0 77 112-190 104-181 (435)
467 PF14853 Fis1_TPR_C: Fis1 C-te 38.1 72 0.0016 17.6 6.3 24 121-144 7-30 (53)
468 PF06855 DUF1250: Protein of u 37.8 64 0.0014 17.1 2.9 33 4-36 9-41 (46)
469 PF08461 HTH_12: Ribonuclease 36.8 88 0.0019 18.2 4.4 43 269-311 4-46 (66)
470 KOG0551 Hsp90 co-chaperone CNS 36.6 2.4E+02 0.0052 23.1 7.2 88 20-108 91-181 (390)
471 KOG3807 Predicted membrane pro 36.4 2.4E+02 0.0051 23.0 12.6 19 194-212 284-302 (556)
472 cd00245 Glm_e Coenzyme B12-dep 36.3 1.9E+02 0.004 24.6 6.6 19 158-176 51-69 (428)
473 KOG4814 Uncharacterized conser 35.7 3.4E+02 0.0073 24.6 9.4 87 161-249 365-457 (872)
474 PF09868 DUF2095: Uncharacteri 35.5 1.3E+02 0.0029 19.8 5.7 34 121-155 67-100 (128)
475 PF09986 DUF2225: Uncharacteri 35.1 2E+02 0.0043 21.7 11.6 50 96-145 141-195 (214)
476 PF14561 TPR_20: Tetratricopep 35.1 1.2E+02 0.0025 19.0 9.4 32 219-250 21-52 (90)
477 KOG2297 Predicted translation 34.8 2.4E+02 0.0053 22.7 16.7 19 264-282 323-341 (412)
478 KOG3636 Uncharacterized conser 34.8 2.9E+02 0.0063 23.6 14.9 91 210-308 173-271 (669)
479 PRK13800 putative oxidoreducta 34.7 4.2E+02 0.0091 25.4 27.0 29 43-72 633-661 (897)
480 TIGR03236 dnd_assoc_1 dnd syst 34.2 1.5E+02 0.0031 24.5 5.5 57 263-319 297-353 (363)
481 PF00244 14-3-3: 14-3-3 protei 33.9 2.2E+02 0.0047 21.9 11.2 58 15-72 6-64 (236)
482 KOG2581 26S proteasome regulat 33.9 2.9E+02 0.0063 23.3 14.6 131 115-249 124-276 (493)
483 KOG3364 Membrane protein invol 33.7 1.6E+02 0.0035 20.3 9.7 67 78-144 30-100 (149)
484 KOG1114 Tripeptidyl peptidase 33.5 4.4E+02 0.0096 25.3 14.8 71 201-278 1212-1283(1304)
485 KOG0991 Replication factor C, 33.5 2.3E+02 0.0049 21.9 15.1 126 121-255 136-273 (333)
486 smart00638 LPD_N Lipoprotein N 33.1 3.6E+02 0.0077 24.1 24.1 102 43-150 308-411 (574)
487 PF14669 Asp_Glu_race_2: Putat 32.4 2.1E+02 0.0046 21.2 14.0 178 108-287 1-206 (233)
488 KOG1524 WD40 repeat-containing 32.3 3.5E+02 0.0076 23.8 9.7 139 146-311 569-718 (737)
489 PF15297 CKAP2_C: Cytoskeleton 32.2 2.9E+02 0.0062 22.7 9.8 61 132-194 120-184 (353)
490 PRK13342 recombination factor 32.1 3.1E+02 0.0068 23.2 18.8 65 153-217 230-302 (413)
491 COG2405 Predicted nucleic acid 32.1 1.4E+02 0.003 20.7 4.3 43 264-307 112-154 (157)
492 PF07064 RIC1: RIC1; InterPro 32.1 2.5E+02 0.0054 22.0 16.4 26 13-38 85-110 (258)
493 PF08542 Rep_fac_C: Replicatio 31.9 1.3E+02 0.0027 18.5 5.5 34 220-254 5-38 (89)
494 PF15297 CKAP2_C: Cytoskeleton 31.8 2.9E+02 0.0063 22.7 9.6 64 96-161 119-186 (353)
495 PF11768 DUF3312: Protein of u 31.7 3.6E+02 0.0079 23.8 11.8 20 122-141 415-434 (545)
496 PF09477 Type_III_YscG: Bacter 31.3 1.6E+02 0.0034 19.4 9.4 15 25-39 21-35 (116)
497 PF03745 DUF309: Domain of unk 31.2 1.1E+02 0.0023 17.5 5.8 33 21-53 10-42 (62)
498 smart00777 Mad3_BUB1_I Mad3/BU 31.2 1.7E+02 0.0037 19.8 8.3 42 239-286 82-123 (125)
499 COG4259 Uncharacterized protei 31.2 1.5E+02 0.0032 19.1 6.5 54 63-118 55-108 (121)
500 KOG2300 Uncharacterized conser 31.1 3.6E+02 0.0078 23.5 17.8 217 97-315 299-546 (629)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-56 Score=387.60 Aligned_cols=310 Identities=26% Similarity=0.389 Sum_probs=289.5
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh
Q 039029 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80 (319)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
|++.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhh--CCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGE--KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
.+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|++|.+.|++|+..+|+.++.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999976 57889999999999999999999999999999999999999999999999
Q ss_pred HHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 039029 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (319)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
|.++|++|.+.|+.|+. .+|+.++.+|++.|++++|.++|++|...|+.||..||..++.+|.+.|+.++|.
T Consensus 703 A~~lf~eM~~~g~~Pdv-------vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTV-------STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred HHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999988876654 8999999999999999999999999999999999999999999999999999885
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-54 Score=374.56 Aligned_cols=304 Identities=22% Similarity=0.366 Sum_probs=296.9
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCccHHHHHHHHHHHhhhcc
Q 039029 88 HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH--KGIQPTMLTYTSLIFVLSKQNR 165 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999986 5789999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHH
Q 039029 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (319)
+++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
|.+.|+.|+. .+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|..
T Consensus 675 M~k~G~~pd~-------~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 675 ARKQGIKLGT-------VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred HHHcCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999987666 89999999999999999999999999999999999999999999999999999863
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.4e-50 Score=345.51 Aligned_cols=298 Identities=24% Similarity=0.379 Sum_probs=246.5
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---
Q 039029 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM--- 77 (319)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 77 (319)
|++.|+.||..+|+.++..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|..
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 34567777777777777777777777777777776653 56667777777777777777777777777655544
Q ss_pred --------------------------------cChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 78 --------------------------------PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 78 --------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y 300 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGY 300 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHH
Confidence 4555667778888888888888888888864 4888899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHH
Q 039029 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (319)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|+.||..+++.|+.+|++.|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 99999999999999998888899999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHH
Q 039029 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 285 (319)
++|++|.+ ||..+|+.|+.+|++.|+.++|.++|++|.+.|+.|+. .||+.++.+|.+.|++++|.++|
T Consensus 381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~-------~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH-------VTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHhcCCcHHHHHHHH
Confidence 99988863 68889999999999999999999999999988877665 78999999999999999999999
Q ss_pred HHHHh-CCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 286 REMVS-KGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 286 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
+.|.+ .|+.|+..+|..++.+|.+.|+.++|.
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99976 588999999999999999999999885
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-49 Score=340.38 Aligned_cols=293 Identities=23% Similarity=0.348 Sum_probs=270.3
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-----------------------------------CHHhHHHH
Q 039029 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP-----------------------------------TAVTYNTL 51 (319)
Q Consensus 7 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~l 51 (319)
.||..+|+++|.+|++.|++++|+++|++|.+.|+.| +..+++.+
T Consensus 186 ~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 4788888888888888888888888888887665555 45566788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCCh
Q 039029 52 IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131 (319)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (319)
+.+|++.|++++|.++|++|. .+|..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 889999999999999999986 4589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 039029 132 KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211 (319)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
++|.+++..|.+.|++|+..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864 68999999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH-cCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 212 DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR-RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+. .+|+.++.+|.+.|++++|.+++++|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~-------~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA-------MHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc-------cchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 9999999999999999999999999999999999986 4776665 79999999999999999999999876
Q ss_pred CCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 291 KGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
++.|+..+|..++.+|...|+.+.|.
T Consensus 489 -~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 489 -PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 57899999999999999999999875
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-47 Score=338.64 Aligned_cols=300 Identities=22% Similarity=0.335 Sum_probs=199.8
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHH
Q 039029 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86 (319)
Q Consensus 7 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
.||..+||++|.+|++.|++++|+++|.+|...|+.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.+
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 35566666666666666666666666666766677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccH
Q 039029 87 IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
+.+|.+.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 7777777777777777777653 466677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC------------------------------CC
Q 039029 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM------------------------------KV 216 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------~~ 216 (319)
+.+.++++.+.+.|..|+..+++.|+.+|++.|++++|.++|++|.+. ++
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 777777777777777777777777777777777777777777666431 11
Q ss_pred C-----------------------------------------------------------------CChhhHHHHHHHHH
Q 039029 217 H-----------------------------------------------------------------PDEVTYNTLMHGRC 231 (319)
Q Consensus 217 ~-----------------------------------------------------------------~~~~~~~~l~~~~~ 231 (319)
. ||..+|+.++.+|+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYV 565 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 2 23334445555555
Q ss_pred cCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHH-hCCCCCChHHHHHHHHHhhhc
Q 039029 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV-SKGITPDDNTYFSLIEGIASV 310 (319)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 310 (319)
+.|+.++|.++|++|.+.|+.|+. .||+.++.+|.+.|.+++|.++|+.|. ..|+.|+..+|..++.+|.+.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~-------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDE-------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 555555555555555555554444 455556666666666666666666665 345556666666666666666
Q ss_pred chhhhhc
Q 039029 311 DKAAESS 317 (319)
Q Consensus 311 g~~~~A~ 317 (319)
|+.++|.
T Consensus 639 G~~~eA~ 645 (857)
T PLN03077 639 GKLTEAY 645 (857)
T ss_pred CCHHHHH
Confidence 6555553
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.1e-47 Score=333.15 Aligned_cols=296 Identities=20% Similarity=0.278 Sum_probs=275.1
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHH
Q 039029 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86 (319)
Q Consensus 7 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+||+.+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.|+.|+..+++.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccH
Q 039029 87 IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
+.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|.+.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 9999999999999999999864 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
+.+.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|.++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 478899999999999999999999999999
Q ss_pred HHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.+.|+.|+. .+|+.++.+|.+.|+++.|.++++.|.+.|+.|+..+++.++.+|.+.|++++|.
T Consensus 381 ~~~g~~Pd~-------~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 381 EQDNVSPDE-------ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HHhCCCCCc-------eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 999988777 6888888888888888888888888888888888888888888888888888875
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=9.3e-23 Score=166.39 Aligned_cols=288 Identities=16% Similarity=0.122 Sum_probs=230.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---hhhHHHHHHHHHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT---ASTYNLLIHELLM 92 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 92 (319)
....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999998743 3667888999999999999999999999887532221 2467788899999
Q ss_pred cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHhhhccHHH
Q 039029 93 ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT----MLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 168 (319)
.|++++|..+|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999987643 4678899999999999999999999999987643222 1245567777889999999
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
|...++++.+... .+...+..+...+.+.|++++|..+++++.+.+......++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987643 246678888899999999999999999998754222245678889999999999999999999988
Q ss_pred cCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhh---cchhhhhc
Q 039029 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS---VDKAAESS 317 (319)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~ 317 (319)
.. |+. ..+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++|.
T Consensus 278 ~~--p~~-------~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 278 EY--PGA-------DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred hC--CCc-------hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 53 333 45688899999999999999999998875 6888888888776553 34555553
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=8e-23 Score=166.77 Aligned_cols=277 Identities=15% Similarity=0.098 Sum_probs=230.5
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT---AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...+...|++++|..+|+++.+.. +.+..++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 455788899999999999999999999987532221 2567888999999999999999999998763 446788999
Q ss_pred HHHHHHHcCchhHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 86 LIHELLMERKMVEADDMLKEMGEKGIVPD----SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
++..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 99999999999999999999988654432 2245667788899999999999999998864 445678888889999
Q ss_pred hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH
Q 039029 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
+.|++++|.++++++...+......++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999987644333567888999999999999999999999876 4666677889999999999999999
Q ss_pred HHHHHHHcCCCCCCcccCcchhhHHHHHHHHHh---cCchhHHHHHHHHHHhCCCCCChH
Q 039029 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK---NQEGDLAEELLREMVSKGITPDDN 298 (319)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 298 (319)
+++++.+. .|+ ...+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 304 ~l~~~l~~--~P~-------~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 304 LLREQLRR--HPS-------LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHh--CcC-------HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999875 344 3678777777664 568999999999999887777665
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=2.7e-22 Score=180.79 Aligned_cols=292 Identities=16% Similarity=0.142 Sum_probs=176.5
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
..+|..+...+.+.|++++|+..|+.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..++..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3444444455555555555555555444432 1233344444445555555555555555544432 2234444455555
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+...|++++|.++++.+.+..+ .+...+..+...+...|++++|...++++...+ |+..++..+..++.+.|++++|
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence 5555555555555555544432 244455555555566666666666666655542 3334555555666666666666
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
.+.++.+.+... .+...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ ++|..+++++.+.
T Consensus 756 ~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 666666655432 255666666666666777777777777766654 3455666666777777777 6677777776653
Q ss_pred CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
.|+. ...+..+...+...|++++|.+.++++++.+ +.+..++..+..++.+.|++++|+.
T Consensus 833 --~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 833 --APNI------PAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred --CCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 2332 2567788888999999999999999999875 3388899999999999999999864
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.92 E-value=2.3e-21 Score=174.88 Aligned_cols=294 Identities=15% Similarity=0.094 Sum_probs=146.9
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHH
Q 039029 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86 (319)
Q Consensus 7 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+++..++..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++.+...+ +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34455666666666666666666666666655432 234455556666666666666666666665543 2244555555
Q ss_pred HHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccH
Q 039029 87 IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
...+.+.|+.++|..+++++.+.++. +...+..++..+...|++++|..+++.+.... +.+..++..+..++...|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 55555556666666655555544322 34444455555555555555555555554432 33445555555555555555
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
++|...++.+.+... .+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+
T Consensus 618 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555554422 134444455555555555555555555554432 223344444444444444444444444444
Q ss_pred HHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhh
Q 039029 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 316 (319)
.+.. |+ +...+..+...+...|++++|.+.++++... .|+..++..+...+.+.|++++|
T Consensus 696 ~~~~--~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 696 QKQH--PK------AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HhhC--cC------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 4332 11 1123334444444444444444444444432 22223333344444444444433
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.8e-19 Score=154.37 Aligned_cols=293 Identities=10% Similarity=0.035 Sum_probs=226.6
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...+..++.++...|++++|+..++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~ 153 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRT 153 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 445666677777889999999999998886433 56778888888899999999999999988764 3356778888888
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+...|++++|...++.+....+. +...+..+ ..+...|++++|...++.+......++......+..++...|++++|
T Consensus 154 l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 154 LVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999888766443 33344333 34778899999999999887764333444555566778889999999
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHH
Q 039029 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER----AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (319)
...++++...... +...+..+...+...|++++ |...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 232 ~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 232 IQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998877533 57778888889999999885 788999888764 34567888889999999999999999999
Q ss_pred HHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHH-HHHHHHHhhhcchhhhhcC
Q 039029 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT-YFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~ 318 (319)
+.+. .|+. ...+..+..++.+.|++++|...++++... .|+... +..+..++...|+.++|..
T Consensus 310 al~l--~P~~------~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 310 SLAT--HPDL------PYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHh--CCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 8874 3443 256777888999999999999999998875 455433 3445667888999998864
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=5.2e-19 Score=151.55 Aligned_cols=290 Identities=11% Similarity=0.056 Sum_probs=238.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 039029 14 GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93 (319)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
..++..+.+.|++++|+.+++........ +...+..++.+....|+++.|...++++.... +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34677888999999999999999887544 45566677778888999999999999999875 33667888889999999
Q ss_pred CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHH
Q 039029 94 RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLF 173 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (319)
|++++|...+++..+..+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999999987443 67788899999999999999999999887764 3334444343 3478899999999999
Q ss_pred HHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH----HHHHHHHHHHc
Q 039029 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE----ARRLLDQMKRR 249 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~ 249 (319)
+.+......++...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++ |...|+++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998877544455555666788899999999999999998865 4456778889999999999986 89999999884
Q ss_pred CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
.|+. ...+..+...+...|++++|...+++..... +.+...+..+...+.+.|++++|+.
T Consensus 280 --~P~~------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 280 --NSDN------VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred --CCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4543 3788999999999999999999999999863 3345677778889999999999863
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.4e-18 Score=147.74 Aligned_cols=305 Identities=14% Similarity=0.017 Sum_probs=215.8
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH----------------
Q 039029 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD---------------- 69 (319)
Q Consensus 6 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------- 69 (319)
+.|+...|..+..+|.+.|++++|++.++...+.+. .+..+|..+..++...|++++|+..|.
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 456667777788888888888888888888777542 245566677777777777776654332
Q ss_pred --------------------------------------------------------------------------------
Q 039029 70 -------------------------------------------------------------------------------- 69 (319)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (319)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred ----HHHHcC--CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 70 ----EMVKQG--IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 70 ----~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
.....+ .+.....+..+..++...|++++|...+++..+..+. ....|..+...+...|++++|...+++..+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222211 0112233445555566677888888888887765432 456777778888888888888888888877
Q ss_pred cCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhH
Q 039029 144 KGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223 (319)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (319)
.. +.+..++..+...+...|++++|...|++.++.... +...+..+...+.+.|++++|...+++..+.. +.+...+
T Consensus 394 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~ 470 (615)
T TIGR00990 394 LN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY 470 (615)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 64 456778888888888889999999999888876433 56677778888888999999999999887653 3456788
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcch-hhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHH
Q 039029 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR-LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302 (319)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 302 (319)
+.+...+...|++++|.+.|++..+.. |+......+. ..++.....+...|++++|..++++.+... +.+...+..
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~ 547 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVAT 547 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 888999999999999999999988753 3221111111 122223333445799999999999988753 234456888
Q ss_pred HHHHhhhcchhhhhcC
Q 039029 303 LIEGIASVDKAAESSN 318 (319)
Q Consensus 303 l~~~~~~~g~~~~A~~ 318 (319)
+...+.+.|++++|+.
T Consensus 548 la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 548 MAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHccCHHHHHH
Confidence 9999999999999864
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.1e-17 Score=143.67 Aligned_cols=292 Identities=10% Similarity=-0.005 Sum_probs=227.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
+......+.+.|++++|+..|++.... .|+...|..+..+|...|++++|++.++..++.. +.+...+..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 446677889999999999999998875 4677889999999999999999999999999875 3366788889999999
Q ss_pred cCchhHHHHHHHHHhhCCCC-----------------------------CChHHHHHH----------------------
Q 039029 93 ERKMVEADDMLKEMGEKGIV-----------------------------PDSITYNIL---------------------- 121 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~-----------------------------~~~~~~~~l---------------------- 121 (319)
.|++++|...|......+.. ++...+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 99999998765443221100 000000000
Q ss_pred --------HHHH------HhcCChHHHHHHHHHHHHcC-C-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccH
Q 039029 122 --------INGY------CRCGNAKKAFSLHDEMIHKG-I-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI 185 (319)
Q Consensus 122 --------~~~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (319)
+... ...+++++|.+.|++....+ . +.....+..+...+...|++++|...+++.+..... ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 0000 11257889999999988764 2 334567788888888999999999999999886432 46
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhH
Q 039029 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265 (319)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (319)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++.++. .|+. ...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~------~~~~ 436 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDF------IFSH 436 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccC------HHHH
Confidence 678888889999999999999999988764 445778888999999999999999999999885 3433 3677
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 266 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
..+...+.+.|++++|+..+++.+.. .+.+...+..+...+...|++++|+.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 88889999999999999999999875 23457788889999999999999863
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=9.7e-19 Score=139.74 Aligned_cols=257 Identities=16% Similarity=0.086 Sum_probs=175.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (319)
.|+.+...+..+|+...|+..|++..+.++ --...|..|...|...+.++.|...|.+.....+. ....+..+...|.
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYy 297 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYY 297 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEe
Confidence 355555555556666666666666665431 12345666666666666777777666666655332 4556666666677
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHH
Q 039029 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFS 206 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (319)
..|..+.|+..|++..+.. +.-...|+.+..++-..|++.+|...+.+.+..... .....+.|...|...|.++.|..
T Consensus 298 eqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred ccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHH
Confidence 7777777777777777653 334567788888888888888888888877776433 45667777788888888888888
Q ss_pred HHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHH
Q 039029 207 LLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285 (319)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 285 (319)
+|....+. .|. ...++.|...|.++|++++|...++++++ +.|+.. .+|+.+...|-..|+.+.|+..+
T Consensus 376 ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA------da~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 376 LYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA------DALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH------HHHHhcchHHHHhhhHHHHHHHH
Confidence 88777664 333 44667788888888888888888888776 555543 57777778888888888888888
Q ss_pred HHHHhCCCCCC-hHHHHHHHHHhhhcchhhhhcCC
Q 039029 286 REMVSKGITPD-DNTYFSLIEGIASVDKAAESSNS 319 (319)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~s 319 (319)
.+.+.. .|. ...++.|...+..+|...+|+.|
T Consensus 446 ~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 446 TRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred HHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 777763 454 45667777777888888877754
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=6.8e-18 Score=135.00 Aligned_cols=291 Identities=17% Similarity=0.099 Sum_probs=205.1
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhh-------
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST------- 82 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------- 82 (319)
..+|..+...+...|++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|.+.++.+ |+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 567888999999999999999999999986433 67788889999999999888888888877653 33222
Q ss_pred ----------------------------HHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHH
Q 039029 83 ----------------------------YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134 (319)
Q Consensus 83 ----------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (319)
|..|.-.+-..|+...|++.|++.....+. -...|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHH
Confidence 222222233344455555555555443221 234555566666666666666
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
...|.+..... +.....+..+...|..+|.++-|+..+++.++..+. -...|+.|..++-..|++.+|.+.+.+....
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 66666655542 333455666666666777777777777777765322 2567888888888888888888888887775
Q ss_pred CCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Q 039029 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294 (319)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 294 (319)
. +.-....+.|...|...|.+++|..+|....+ +.|.-. ..++.|...|-++|++++|+..+++.+. +.
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~a------aa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFA------AAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhh------hhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 3 23356677888888888888888888888776 344432 5788888889999999999999998886 56
Q ss_pred CC-hHHHHHHHHHhhhcchhhhhc
Q 039029 295 PD-DNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 295 ~~-~~~~~~l~~~~~~~g~~~~A~ 317 (319)
|+ ...++.+...|...|+.++|+
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHH
Confidence 76 457888888888888888876
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=3.2e-16 Score=143.31 Aligned_cols=167 Identities=12% Similarity=0.040 Sum_probs=84.7
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-CHHhH------------HHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP-TAVTY------------NTLIDGYCNKGNLEMAFSFRDEMVKQGI 76 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 76 (319)
...+..+...+.+.|++++|+..|++..+..... ....| ......+.+.|++++|+..|+++++..
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~- 381 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD- 381 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 4445555555666666666666666555433211 11111 111233445555666666666555543
Q ss_pred CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHH-----------------------------------
Q 039029 77 MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL----------------------------------- 121 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------------------------------- 121 (319)
+.+...+..+..++...|++++|++.|++..+..+. +...+..+
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 223444555556666666666666666666544322 22222111
Q ss_pred -------HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 122 -------INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 122 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
...+...|++++|++.+++..+.. +.+...+..+...|.+.|++++|...++++.+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 222334566666666666665543 334455555666666666666666666665543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=5.7e-16 Score=141.63 Aligned_cols=289 Identities=12% Similarity=0.044 Sum_probs=208.3
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHH-----------
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL----------- 85 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 85 (319)
...+.+.|++++|+..|+++.+... .+...+..+..++...|++++|++.|+++++.... +...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHH
Confidence 4466788999999999999888643 35667778888999999999999999998876322 2222222
Q ss_pred -------------------------------HHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHH
Q 039029 86 -------------------------------LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134 (319)
Q Consensus 86 -------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (319)
+...+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 223345678999999999999887554 677888899999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC-----------------------------------
Q 039029 135 FSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK----------------------------------- 179 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------- 179 (319)
...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999988753 334444433333444455555554444432111
Q ss_pred ----CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 180 ----GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 180 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
..+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..++..+...|++++|.+.++.+.+. .|+.
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~ 670 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDS 670 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCC
Confidence 123345566778888889999999999999988764 446778888899999999999999999987763 3333
Q ss_pred cccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCC--CC---ChHHHHHHHHHhhhcchhhhhcC
Q 039029 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI--TP---DDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 256 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
...+..+..++...|++++|.++++++....- +| +...+..+...+...|++++|+.
T Consensus 671 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 671 ------LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred ------hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 25667788888899999999999999887521 22 22455566777888898888863
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=8.7e-19 Score=136.00 Aligned_cols=262 Identities=18% Similarity=0.145 Sum_probs=107.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENG-LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
.+...+.+.|++++|++++....... .+.+...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45788888999999999996654443 3446666777777888889999999999999877533 56667777776 688
Q ss_pred CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhhhccHHHHHHH
Q 039029 94 RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQL 172 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999888776543 466677788888999999999999999877542 345677888888889999999999999
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC
Q 039029 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 252 (319)
+++..+..+. |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|..+|++..+..
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-- 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-- 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--
Confidence 9999887433 57778888888999999999888888877653 4566778888999999999999999999988743
Q ss_pred CCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
|+ |+.....+..++...|+.++|.++.+++..
T Consensus 245 p~------d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PD------DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-------HHHHHHHHHHHT-----------------
T ss_pred cc------cccccccccccccccccccccccccccccc
Confidence 33 336778888999999999999988877654
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=2.4e-15 Score=122.05 Aligned_cols=278 Identities=15% Similarity=0.154 Sum_probs=212.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHH--HHHHHHHHcCchhHH
Q 039029 22 KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN--LLIHELLMERKMVEA 99 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 99 (319)
-.|++++|.+......+....| ...+........+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 3599999998888766642221 223434455558899999999999999876 44543332 346788899999999
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHH-------HHHHHHHHHhhhccHHHHHHH
Q 039029 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML-------TYTSLIFVLSKQNRMIEADQL 172 (319)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 172 (319)
...++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999988755 78889999999999999999999999999876442221 233333333444555666677
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC
Q 039029 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 252 (319)
++.+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+. .
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--C
Confidence 7766543 2347788889999999999999999999998874 4555322 334445669999999999998875 3
Q ss_pred CCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 253 PDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
|++ ...+..+.+.|.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|..
T Consensus 325 P~~------~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 325 GDT------PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444 266788999999999999999999999985 7999999999999999999998853
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=2.6e-15 Score=122.51 Aligned_cols=286 Identities=14% Similarity=0.077 Sum_probs=208.4
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHH
Q 039029 21 CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (319)
...|+++.|.+.+....+.... ....+-....+....|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4679999999999888775422 233445556788889999999999999887632222233444578888999999999
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHH-HHHHHH---hhhccHHHHHHHHHHH
Q 039029 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT-SLIFVL---SKQNRMIEADQLFENF 176 (319)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 176 (319)
..++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998755 7788899999999999999999999999998644 333332 111221 2233333333344444
Q ss_pred hhCCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 177 LAKGM---LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT---YNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 177 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
..... +.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.+++..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 44322 1377888889999999999999999999998853 44332 122222234457888999999888874
Q ss_pred CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.|+. |+.....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.
T Consensus 329 -~p~~----~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 329 -VDDK----PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred -CCCC----hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444 2224567889999999999999999996555445799999999999999999999885
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.5e-15 Score=115.39 Aligned_cols=305 Identities=19% Similarity=0.220 Sum_probs=224.4
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHH
Q 039029 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85 (319)
Q Consensus 6 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
.+.+..++.++|.++++-...++|.+++++......+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|.
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 35567899999999999999999999999999888888999999998765433 33788999999999999999999
Q ss_pred HHHHHHHcCchhH----HHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHH-HHHHHHHHHHc----CC----CccHHH
Q 039029 86 LIHELLMERKMVE----ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK-AFSLHDEMIHK----GI----QPTMLT 152 (319)
Q Consensus 86 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~ 152 (319)
++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+-++..+ +..++.++... .+ +.+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 45778889999999999999999999999888754 44455554432 22 334567
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHhhC----CCCcc---HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 039029 153 YTSLIFVLSKQNRMIEADQLFENFLAK----GMLPD---IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (319)
|...+..|.+..+.+-|.++..-+... .+.|+ ..-|..+....++....+.....|+.|.-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 788888899999988888887655432 12222 23455677777788888888888888877767788888888
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCC-------------------CCCCcc----------------------------c
Q 039029 226 LMHGRCRQGKVEEARRLLDQMKRRGI-------------------KPDHIS----------------------------F 258 (319)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~~~-------------------~~~~~~----------------------------~ 258 (319)
++++....|.++-..++|..++..|. .|+... .
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 88888888888887777777665442 222110 1
Q ss_pred CcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCC----CCChHHHHHHHHHhhhcchhh
Q 039029 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI----TPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 314 (319)
.-+....+.++-.+.+.|+.++|.+++.-+.+.+- .|.......++.+-.+.....
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 11234456666778889999999999988865432 233333334555444444433
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=9.8e-15 Score=128.04 Aligned_cols=301 Identities=11% Similarity=0.031 Sum_probs=213.2
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...+..+...+.+.|++++|.++|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+.. +..+..+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~ 125 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHH
Confidence 3457888899999999999999999988763 3356677788888999999999999999998874 33555 8888888
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHH------------------------------
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD------------------------------ 139 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------ 139 (319)
+...|+.++|+..++++.+..+. +...+..+..++...+..++|++.++
T Consensus 126 l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 99999999999999999987554 55566666666666666554444333
Q ss_pred ----------------HHHHc-CCCccHH-HHH----HHHHHHhhhccHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHh
Q 039029 140 ----------------EMIHK-GIQPTML-TYT----SLIFVLSKQNRMIEADQLFENFLAKGML-PDIVMFNALIDGHC 196 (319)
Q Consensus 140 ----------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 196 (319)
.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+. ....+...|.
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl 283 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYL 283 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence 33322 1112211 111 1123445778999999999999887532 332 2222577899
Q ss_pred cCCcHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCc------ccCcc---hhh
Q 039029 197 TNGNIERAFSLLKEMDRMKVHP---DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI------SFNPT---RLT 264 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~---~~~ 264 (319)
..|++++|...|+++.+..... .......+..++...|++++|..+++.+.+.. |... ...|+ ...
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~--P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS--PPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--CceEeecCCCCCCCCchHHHH
Confidence 9999999999999987643111 12345667778899999999999999998753 2110 11222 234
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
+..+...+...|++++|+++++++... .+-+...+..+...+...|++++|+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 556777888888999999888888775 24456677778888888888888763
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=5.8e-18 Score=131.43 Aligned_cols=255 Identities=16% Similarity=0.144 Sum_probs=113.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhc
Q 039029 50 TLIDGYCNKGNLEMAFSFRDEMVKQG-IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (319)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997655543 2335556666777778899999999999999987654 66777777777 789
Q ss_pred CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC-CCccHHHHHHHHHHHhcCCcHHHHHHH
Q 039029 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-MLPDIVMFNALIDGHCTNGNIERAFSL 207 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (319)
+++++|.+++....+. .+++..+..++..+...++++.+..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887765 3566778888889999999999999999977543 345778888999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
+++..+.. +.|......++..+...|+.+++.++++...+.. |+ +...+..+..+|...|+.++|...+++
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~------~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PD------DPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HT------SCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cC------HHHHHHHHHHHhccccccccccccccc
Confidence 99998864 3357788899999999999999999999887764 22 225778999999999999999999999
Q ss_pred HHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 288 MVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
..... +.|+.....+..++...|+.++|..
T Consensus 240 ~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 240 ALKLN-PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHS-TT-HHHHHHHHHHHT----------
T ss_pred ccccc-ccccccccccccccccccccccccc
Confidence 98852 4478888999999999999999864
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=9.9e-15 Score=128.85 Aligned_cols=264 Identities=11% Similarity=0.014 Sum_probs=175.4
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...|..+..++.. +++.+|+..+.+..... |+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44556666666665 67777888777666543 44433333444445778888888888776554 334444556666
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
.+.+.|+.++|...+++..+..+. +...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 777788888888888877766422 3333333334444558888888888887765 3456777777778888888888
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
|...+++.....+. +...+..+...+...|++++|...+++..+.. +-+...+..+..++...|++++|...++++.+
T Consensus 628 A~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888887776433 56677777777778888888888888777653 33556777777888888888888888888776
Q ss_pred cCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
. .|+.. .+.........+..+++.|.+-+++...
T Consensus 706 l--~P~~a------~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 706 D--IDNQA------LITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred c--CCCCc------hhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4 34432 3344455555666667777776666554
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=2.6e-14 Score=125.46 Aligned_cols=297 Identities=11% Similarity=-0.009 Sum_probs=214.9
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~ 158 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQ 158 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567788888999999999999999998874 33556 888889999999999999999999987532 4555555666
Q ss_pred HHHHcCchhHHHH----------------------------------------------HHHHHhhC-CCCCChH-HH--
Q 039029 89 ELLMERKMVEADD----------------------------------------------MLKEMGEK-GIVPDSI-TY-- 118 (319)
Q Consensus 89 ~~~~~~~~~~a~~----------------------------------------------~~~~~~~~-~~~~~~~-~~-- 118 (319)
++...+..+.|+. .++.+.+. ...|+.. .+
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 6655555554443 33333322 1112111 11
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc---cHHHHHHHHH
Q 039029 119 --NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP---DIVMFNALID 193 (319)
Q Consensus 119 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~ 193 (319)
...+..+...|++++|+..|+.+.+.+.+........+..+|...|++++|...|+++....... .......+..
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 11133456779999999999999887532112233335778999999999999999987653221 1345666777
Q ss_pred HHhcCCcHHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccC
Q 039029 194 GHCTNGNIERAFSLLKEMDRMKV-----------HPD---EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259 (319)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (319)
++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|+++++++... .|+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n---- 392 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGN---- 392 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC----
Confidence 88999999999999999876531 122 124456778888999999999999999875 3443
Q ss_pred cchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhhcchhhhhcC
Q 039029 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD-DNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
...+..+...+...|++++|++.+++.+.. .|+ ...+......+.+.|++++|+.
T Consensus 393 --~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 393 --QGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 368889999999999999999999999985 464 5666677778889999998863
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.1e-15 Score=123.32 Aligned_cols=277 Identities=12% Similarity=0.039 Sum_probs=215.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCchhHHHH
Q 039029 24 GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI--MPTASTYNLLIHELLMERKMVEADD 101 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
-+..+|+..|..+..+ +.-+..+...+..+|...+++++|.++|+.+.+... .-+..+|...+..+ ++.-+.--
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHH
Confidence 4678999999996665 333557788899999999999999999999988631 12556777766544 22222222
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCC
Q 039029 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181 (319)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (319)
+-+.+.+.. +..+.+|.++..+|.-.++++.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 333444443 3378899999999999999999999999999874 33788999999999999999999999998887633
Q ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcc
Q 039029 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261 (319)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (319)
. +...|--+...|.+.++++.|+-.|+++.+.+ +-+......+...+.+.|+.++|+.+++++...+ |..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn------ 556 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKN------ 556 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCC------
Confidence 2 34556667888999999999999999998876 4467777888899999999999999999998753 332
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
+..--.-+..+...+++++|+..++++.+. ++-+...|..+.+.|.+.|+.+.|.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHH
Confidence 133345566777889999999999999985 3446677888889999999988875
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=5.2e-14 Score=114.31 Aligned_cols=261 Identities=14% Similarity=0.081 Sum_probs=202.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTY--NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
|-.......+.|+++.|.+.+.++.+.. |+.... ......+...|+++.|...++.+.+.. +-+......+...|
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~ 197 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3333555589999999999999998753 444322 244678899999999999999999886 34678888999999
Q ss_pred HHcCchhHHHHHHHHHhhCCCCCCh-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 91 LMERKMVEADDMLKEMGEKGIVPDS-------ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
.+.|++++|.+++..+.+....++. .+|..++.......+.+...++++.+... .+.++.....+...+...
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHC
Confidence 9999999999999999987655322 13333444444455566667777766544 356788899999999999
Q ss_pred ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.+++++|.+.|
T Consensus 277 g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 277 DDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998885 4455322 2333445699999999999988764 445667888999999999999999999
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
+.+.+. .|+ ...+..+...+.+.|+.++|.+++++....
T Consensus 352 e~al~~--~P~-------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 352 RAALKQ--RPD-------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHhc--CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999985 344 478889999999999999999999987653
No 29
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=1.6e-13 Score=104.58 Aligned_cols=279 Identities=16% Similarity=0.190 Sum_probs=221.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHH
Q 039029 22 KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
-.|+|.+|+++...-.+.+.. ....|..-..+.-+.|+.+.+-.++.+..+....++....-...+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 359999999999998887655 3446777778888999999999999999887445667777778888999999999999
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHhhhccHHHHHHHHH
Q 039029 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM-------LTYTSLIFVLSKQNRMIEADQLFE 174 (319)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 174 (319)
-+.++.+.++. ++........+|.+.|++..+..++.++.+.+.-.+. .++..++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999988765 7888899999999999999999999999998765444 356666666666666666666666
Q ss_pred HHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCC
Q 039029 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 254 (319)
..... ..-++..-..++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-.+..++-.+. .|+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~ 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPE 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh--CCC
Confidence 65544 233567777888889999999999999999888765554 22233456778888878777776654 233
Q ss_pred CcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
. +..+.+|...|.+.+.|.+|.+.|+..++. .|+..+|..+..++.+.|+.++|.
T Consensus 327 ~------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 327 D------PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred C------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHH
Confidence 2 157889999999999999999999987764 799999999999999999998874
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=7.2e-14 Score=103.59 Aligned_cols=273 Identities=14% Similarity=0.122 Sum_probs=208.8
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHHcCchhH
Q 039029 22 KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP---TASTYNLLIHELLMERKMVE 98 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 98 (319)
-..+.++|.++|-+|.+.. +.+..+.-++.+.|.+.|..++|+.+.+.+.++.-.+ .......|.+-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567899999999999853 2355667789999999999999999999998762111 12234556677888999999
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH----HHHHHHHHHHhhhccHHHHHHHHH
Q 039029 99 ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM----LTYTSLIFVLSKQNRMIEADQLFE 174 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 174 (319)
|+.+|..+.+.+.. -......|+..|....+|++|+++-+++...+-.+.. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999986433 5667888999999999999999999999887543332 345666666677889999999999
Q ss_pred HHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCC
Q 039029 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 254 (319)
+....+.. .+..--.+.+.+...|++++|.+.++.+.+.+..--..+...|..+|...|+.++...++.++.+....+
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~- 282 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA- 282 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-
Confidence 99887544 4455556778889999999999999999987655556778889999999999999999999998864333
Q ss_pred CcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhh
Q 039029 255 HISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308 (319)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (319)
..-..+.+.-....-.+.|...+.+-+.+ .|+...+..++..-.
T Consensus 283 --------~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 283 --------DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred --------cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 23344444444445556666666555554 699999888887643
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.4e-14 Score=110.98 Aligned_cols=285 Identities=14% Similarity=0.045 Sum_probs=215.0
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCc
Q 039029 18 SGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM--PTASTYNLLIHELLMERK 95 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 95 (319)
.++....+.+++++-.+.....|.+.+...-+....+.....+++.|+.+|+++.+..+- -|..+|..++-.- ..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence 344455577778888888888887767766666677777788999999999999887321 2455666554332 221
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
- .+.++.+-...-.+--+.|...+.+-|+-.++.++|...|+...+.+ +.....|+.+.+-|....+...|.+-++.
T Consensus 313 s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 11122211111112245577788888899999999999999999876 45678899999999999999999999999
Q ss_pred HhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
+++.++. |...|-.|..+|.-.+.+.-|+-.|++..... +-|...|.+|...|.+.++.++|.+.|++....|-.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--- 464 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--- 464 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc---
Confidence 9988654 88999999999999999999999999998875 567889999999999999999999999999886532
Q ss_pred cccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC----C-CCC-ChHHHHHHHHHhhhcchhhhhc
Q 039029 256 ISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK----G-ITP-DDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 256 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
+...+..+...|-+.++.++|...+.+-++. | +.| ....-.-|..-+.+.+++++|+
T Consensus 465 -----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 465 -----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred -----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 2267889999999999999999888877653 3 233 2223333566678899999886
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=1.1e-13 Score=122.47 Aligned_cols=253 Identities=12% Similarity=-0.000 Sum_probs=196.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
+...|..+..++.. +++++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 66778888888776 8999999988888776 355544444555567899999999999998665 344555677788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHH
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
++.+.|++++|...+++..+.+ +.....+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999999998874 3344444444445556699999999999999864 567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHH
Q 039029 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 283 (319)
|...+++..... +.+...+..+..++...|++++|...++++.+. .|+.. ..+..+..++...|++++|..
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~------~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDP------ALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH------HHHHHHHHHHHHCCCHHHHHH
Confidence 999999998875 445677888889999999999999999999884 45442 788999999999999999999
Q ss_pred HHHHHHhCCCCCCh-HHHHHHHHHhhhcchhhh
Q 039029 284 LLREMVSKGITPDD-NTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 284 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 315 (319)
.+++..+. .|+. .+.........+..+++.
T Consensus 699 ~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 699 YARLVIDD--IDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHHHHhc--CCCCchhhhhhhHHHHHHHHHHH
Confidence 99999875 4543 333333333444444443
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.9e-13 Score=111.57 Aligned_cols=274 Identities=11% Similarity=0.018 Sum_probs=197.4
Q ss_pred CCCccc-HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHH
Q 039029 7 QPDSYT-YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85 (319)
Q Consensus 7 ~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
.|+... +-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|...++.+.+.. |-+..+...
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~l 192 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKL 192 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 454433 344467788899999999999998775433333344446888899999999999999999986 336678889
Q ss_pred HHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHH-HHHHHH---HhcCChHHHHHHHHHHHHcC---CCccHHHHHHHHH
Q 039029 86 LIHELLMERKMVEADDMLKEMGEKGIVPDSITYN-ILINGY---CRCGNAKKAFSLHDEMIHKG---IQPTMLTYTSLIF 158 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 158 (319)
+...+...|+++++.+.+..+.+.++. +...+. .-..++ ...+..++..+.+..+.+.. .+.+...+..+..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 999999999999999999999988654 333332 111221 33333333344555555442 1247888999999
Q ss_pred HHhhhccHHHHHHHHHHHhhCCCCccHHHH-HHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHcCCc
Q 039029 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMF-NALIDGHCTNGNIERAFSLLKEMDRMKVHPDE--VTYNTLMHGRCRQGK 235 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 235 (319)
.+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.. +-|. .....+...+.+.|+
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHccc
Confidence 999999999999999999987433221111 111222234578888999998877653 3334 566788999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
+++|.+.|+........|+. ..+..+...+.+.|+.++|.++|++...
T Consensus 351 ~~~A~~~le~a~a~~~~p~~-------~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDA-------NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999964444344544 6788999999999999999999998654
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=6.7e-13 Score=115.21 Aligned_cols=296 Identities=12% Similarity=0.041 Sum_probs=185.0
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
...+...|++++|+++|+++.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 44677778888888888888877544 4666677778888888888888888888776 34544454444444445556
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHH--------------------------------------
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH-------------------------------------- 138 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-------------------------------------- 138 (319)
.+|++.++++.+..+. +...+..+..++.+.|-...|+++.
T Consensus 186 ~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5688888888776433 5555555555555554333332222
Q ss_pred ----------HHHHHc--CCCccHHH----HHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 139 ----------DEMIHK--GIQPTMLT----YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 139 ----------~~~~~~--~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
+.+... ..|+.... ..-.+-++...+++.++++.++.+...+.+....+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 222221 01111111 11223456677888888888888887765544556777888888888888
Q ss_pred HHHHHHHHHHhCC-----CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC------CCCcccCcchhh-HHHHHH
Q 039029 203 RAFSLLKEMDRMK-----VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK------PDHISFNPTRLT-YNALIQ 270 (319)
Q Consensus 203 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~l~~ 270 (319)
+|..++..+.... .+++......|.-++...+++++|..+++++.+.... ......+|+-.. +..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 8888888875532 1223333567788888888888888888888763110 011122333333 344555
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 271 GLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.+...|+..+|.+.++++... -+-|......+...+...|.+++|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 667777777777777777654 2346666666666777777776664
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.4e-13 Score=106.83 Aligned_cols=292 Identities=13% Similarity=0.054 Sum_probs=224.7
Q ss_pred CCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChh
Q 039029 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81 (319)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
.|++-+...-+....+.-.+.++++|+.+|+++.+..+- -|..+|+.++-.-....+. .++.+-.-.--+--+.
T Consensus 256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~E 331 (559)
T KOG1155|consen 256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRPE 331 (559)
T ss_pred ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCcc
Confidence 355555555555556666788999999999999987421 2566787776443222221 1221111110123456
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
|...+...|+-.++.++|...|+...+.++. ....|+.+..-|....+...|.+.|+..++-. |.|-..|-.+.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 7788888899999999999999999988765 77889999999999999999999999999875 668899999999999
Q ss_pred hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH
Q 039029 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
-.+.+.-|+-.|++.....+. |...|.+|..+|.+.++.++|+..|.+....+ ..+...+..+...|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999887544 89999999999999999999999999998876 4466789999999999999999999
Q ss_pred HHHHHHHcC----CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhc
Q 039029 242 LLDQMKRRG----IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310 (319)
Q Consensus 242 ~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (319)
.|.+.++.- ...+. +..+..-|...+.+.+++++|.......... .+...--..|++.+.+.
T Consensus 488 ~yek~v~~~~~eg~~~~~-----t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDE-----TIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHhhcccchH-----HHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHHHh
Confidence 998877632 11111 2234444777889999999999887776653 56666667777766554
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.5e-13 Score=105.81 Aligned_cols=298 Identities=15% Similarity=0.196 Sum_probs=207.3
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCChHHH-HHHHHHHHHc------------
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN--KGNLEMA-FSFRDEMVKQ------------ 74 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a-~~~~~~~~~~------------ 74 (319)
+.+=|.|+.. ...|...++.-+|+.|.+.|.+.+...-..+++.-+- ..+.--+ ++.|-.|.+.
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666665 4568899999999999999988888776666654332 2221111 1222222221
Q ss_pred -------CCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039029 75 -------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147 (319)
Q Consensus 75 -------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
-.+-+..++..+|.+.++--..+.|.+++++......+.+..+||.++.+-.-.. ..++..+|.+..+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 1345778999999999999999999999999998888889999999987654332 37889999999999
Q ss_pred ccHHHHHHHHHHHhhhccHHH----HHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHH-HHHHHHHHHh----CCCC-
Q 039029 148 PTMLTYTSLIFVLSKQNRMIE----ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER-AFSLLKEMDR----MKVH- 217 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~- 217 (319)
||..|+|+++++..+.|+++. |.+++.+|.+.|+.|+..+|..++..+.+-++..+ +..++.++.. ...+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56677888899999999999999999998888754 4444444432 2222
Q ss_pred ---CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcc-cCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Q 039029 218 ---PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS-FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGI 293 (319)
Q Consensus 218 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 293 (319)
.|...|...+..|.+..+.+-|.++-.-+.... ...... ......-|..+....++....+.-...|+.|+-.-+
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 234556777888888888888888766654321 111100 001113345556666666666677777777766656
Q ss_pred CCChHHHHHHHHHhhhcchh
Q 039029 294 TPDDNTYFSLIEGIASVDKA 313 (319)
Q Consensus 294 ~~~~~~~~~l~~~~~~~g~~ 313 (319)
-|+..+...++++..-.+.+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~ 449 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRL 449 (625)
T ss_pred cCCchhHHHHHHHHhhcCcc
Confidence 66777777777766555544
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=1e-12 Score=114.05 Aligned_cols=288 Identities=11% Similarity=0.083 Sum_probs=200.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
-+-...+.|+++.|++.|++..+....-...++ .++..+...|+.++|+..+++.... .+........+...+...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 344556889999999999999886533112344 8888888899999999999998821 12223333334567888899
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
+++|+++|+++.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999988665 6777778888999999999999999998876 45555554444444445666669999999
Q ss_pred HhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHH----------------------------------------------
Q 039029 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK---------------------------------------------- 209 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------------- 209 (319)
+.+..+. +...+..+..+..+.|-...|.++..
T Consensus 195 ll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 9887533 45555555555555554443333332
Q ss_pred --HHHhC-CCCCCh-hhH----HHHHHHHHcCCcHHHHHHHHHHHHHcCCC-CCCcccCcchhhHHHHHHHHHhcCchhH
Q 039029 210 --EMDRM-KVHPDE-VTY----NTLMHGRCRQGKVEEARRLLDQMKRRGIK-PDHISFNPTRLTYNALIQGLCKNQEGDL 280 (319)
Q Consensus 210 --~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (319)
.+... +..|.. ..| .-.+-++...|++.++.+.|+.+...+.+ |+ .+-..+..+|...+++++
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~--------y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD--------YARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH--------HHHHHHHHHHHhcCCcHH
Confidence 22110 111221 111 23455667888999999999999877643 32 466789999999999999
Q ss_pred HHHHHHHHHhCC-----CCCChHHHHHHHHHhhhcchhhhhc
Q 039029 281 AEELLREMVSKG-----ITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 281 A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
|..+++.+.... .+++......|.-++...|++++|.
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999997642 1234444578899999999999985
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.1e-13 Score=111.99 Aligned_cols=265 Identities=13% Similarity=0.091 Sum_probs=211.2
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCcChhhHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGL--VPTAVTYNTLIDGYCNKGNLEMAFSF-RDEMVKQGIMPTASTYNLLI 87 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...+..+|...+++++|..+|+.+.+... .-+..+|...+--+-+ +-++.. -+.+.... +-.+.+|..+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhc
Confidence 4556788999999999999999999988531 2256678777754422 222222 23334332 44778999999
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHH
Q 039029 88 HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
.+|.-.++.+.|++.|++..+..+. ...+|+.+..-+....+++.|...|+...... +-+-..|..+...|.+.++++
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhh
Confidence 9999999999999999999987543 78899999999999999999999999987643 223456667788899999999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 039029 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (319)
.|+-.|+++.+.++. +.+....+...+.+.|+.++|+.+++++...+ +.|+..--.-+..+...+++++|+..++++.
T Consensus 507 ~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 507 FAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 999999999987654 66777778888999999999999999998765 3455555556777888999999999999998
Q ss_pred HcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 039029 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292 (319)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 292 (319)
+ +.|+.. ..|..+...|.+.|+.+.|+.-|--+.+.+
T Consensus 585 ~--~vP~es------~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 585 E--LVPQES------SVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred H--hCcchH------HHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 8 455543 688899999999999999999998888753
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=6.1e-12 Score=105.37 Aligned_cols=297 Identities=15% Similarity=0.113 Sum_probs=213.4
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
....-.....+...|++++|.+++.++++... .....|..|...|-..|+.+++...+-.+-..+ +-|...|..+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 33333444455556999999999999998754 377789999999999999999998876665554 3466889999999
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHH----HHHHHHHHHhhhcc
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML----TYTSLIFVLSKQNR 165 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 165 (319)
..+.|.+..|.-.|.+.++..++ +...+-.-...|.+.|+...|...|.++.+...+.+.. .....++.+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999988654 66666666788999999999999999998874222222 22333555666777
Q ss_pred HHHHHHHHHHHhhC-CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHh-------------------------------
Q 039029 166 MIEADQLFENFLAK-GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR------------------------------- 213 (319)
Q Consensus 166 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------- 213 (319)
.+.|.+.++..... +-..+...++.++..+.+...++.+.........
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 78888888877663 1222445566666667666666666665555433
Q ss_pred ------------------------------CC--CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcc
Q 039029 214 ------------------------------MK--VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261 (319)
Q Consensus 214 ------------------------------~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (319)
.. +.-+...|.-+..++...|++.+|+.+|..+....... +
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-------~ 448 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-------N 448 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-------c
Confidence 11 11123345667778888888888888888887653222 2
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
...|-.+.++|...|.++.|.+.++..+... +-+...-..|...+.+.|+.|+|.
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHH
Confidence 3678888888888899999999988888752 234555666777788888888774
No 40
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=6.6e-12 Score=95.99 Aligned_cols=270 Identities=15% Similarity=0.100 Sum_probs=217.2
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
..|..-+.+.-+.|+.+.+-..+.+..+....++....-...+.....|+++.|..-++++.+.+ +.+........++|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHH
Confidence 44556667888999999999999999987556677788888899999999999999999999886 44778889999999
Q ss_pred HHcCchhHHHHHHHHHhhCCCCCCh-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 91 LMERKMVEADDMLKEMGEKGIVPDS-------ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
.+.|++.....++..+.+.+.-.+. .+|..++.-....+..+.-...++..... .+.++..-..++.-+.+.
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc
Confidence 9999999999999999998866443 46777777777777777766677776655 455677788888889999
Q ss_pred ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
|+.++|.++..+..+.+..|. .. ..-.+.+-++...-.+..+...+.. +.++..+.+|...|.+.+.|.+|...|
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred CChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999877665 22 2223466778777777777765432 345578899999999999999999999
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 296 (319)
+..++.+ |+..+|+.+..++.+.|+..+|.++.++....-.+|+
T Consensus 352 eaAl~~~---------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 352 EAALKLR---------PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHhcC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 9887743 4448999999999999999999999998876534444
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=9.7e-13 Score=111.50 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc
Q 039029 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN---------KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
++++|+.+|++..+..+. +...|..+..++.. .+++++|...+++.++.+ +-+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 356777777777665322 34445444443332 233667777777777664 2255666666666677777
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
+++|...+++..+..+. +...+..+...+...|++++|...+++..+.+ +.+...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 77777777777766533 55566666777777777777777777776653 22222333333345556777777777776
Q ss_pred HhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
+.....+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| +.|...++.+.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 665432223444555666666777777777777666443 222 233444445555555 356665555544
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=8.2e-13 Score=102.81 Aligned_cols=282 Identities=13% Similarity=0.080 Sum_probs=204.1
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc
Q 039029 18 SGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN--KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
..+.++|+++.|++++.-+.+..-+.....-+.+-..+.- -.++..|.++-+..+... .-+......-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3577899999999999888775433222222332222222 346777777776665432 1122222222233445789
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
+++|.+.|++............|| +.-.+-..|+.++|++.|-++... +..+..+...+...|....+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998764332233333 334567789999999999887664 345778888889999999999999999988
Q ss_pred HhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
.... ++.|+...+.|...|-+.|+-.+|.+.+-+--+. .+.+..+..+|...|....-++++..+|++..- +
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i---- 655 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I---- 655 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c----
Confidence 7665 4557899999999999999999999887665443 466788999999999999999999999998754 2
Q ss_pred cccCcchhhHHHHHHH-HHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhh
Q 039029 256 ISFNPTRLTYNALIQG-LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 256 ~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
.|+..-|..++.. +.+.|++.+|.+++++.... ++-|...+..|++-+...|..+
T Consensus 656 ---qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 656 ---QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred ---CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 3555889877665 45789999999999998764 6778888888888887777543
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=2.2e-12 Score=97.72 Aligned_cols=202 Identities=15% Similarity=0.101 Sum_probs=163.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (319)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 345678888889999999999999999988764 335677788888899999999999999998877543 667788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
..+...|++++|.+.+++...... +.....+..+..++...|++++|...+.+....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 899999999999999999887522 223456777788889999999999999998876433 566788888899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998776 244566677778888889999999998887765
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=2e-12 Score=97.97 Aligned_cols=200 Identities=14% Similarity=0.046 Sum_probs=167.9
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4567788899999999999999999998764 3357788889999999999999999999998875 3356778888899
Q ss_pred HHHcCchhHHHHHHHHHhhCCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGI-VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
+...|++++|.+.+++..+... ......+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987532 2245567778889999999999999999998874 4456788889999999999999
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999998877 344667777788888899999999998887765
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6e-12 Score=100.31 Aligned_cols=290 Identities=15% Similarity=0.064 Sum_probs=230.4
Q ss_pred CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHH
Q 039029 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84 (319)
Q Consensus 5 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
|+.-++.......+-+-..+++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.++.+.- |....+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 44556666667777888899999999999999886 34566677777889999999988888888888764 55778899
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc
Q 039029 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
.+.-.|...|...+|.+.|.+....... =...|-.+..+|.-.|+.++|...|....+. ++-...-+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 9888888899999999999998765433 4568899999999999999999999988775 2222223334445688899
Q ss_pred cHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHcCCcHHH
Q 039029 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM----K--VHPDEVTYNTLMHGRCRQGKVEE 238 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~ 238 (319)
+...|.++|.+.....+ .|+...+.+.-.....+.+.+|..+|+..... + ......+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999999888743 37788888877777889999999999987521 1 11244568899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhh
Q 039029 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309 (319)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (319)
|+..+++.+... |. +..++.++.-.|...|+++.|.+.|.+.+. +.|+..+-..++..+..
T Consensus 474 AI~~~q~aL~l~--~k------~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 474 AIDYYQKALLLS--PK------DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHcC--CC------chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 999999998853 33 347899999999999999999999999886 57888777777775543
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=8.7e-12 Score=92.79 Aligned_cols=266 Identities=16% Similarity=0.138 Sum_probs=206.4
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA------VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (319)
..+.-+|.+.|.+.|..++|+++.+.+.++ ||. .....+.+-|...|-++.|+++|..+.+.+ ..-....
T Consensus 69 ~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~Al 144 (389)
T COG2956 69 FEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGAL 144 (389)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHH
Confidence 344557888999999999999999999886 332 345567788899999999999999998864 2355677
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPD----SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
..|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..++.+..+.+ +..+..--.+.+.
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v 223 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHH
Confidence 8899999999999999999999988765543 2345666777777889999999999998875 4455666677788
Q ss_pred HhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHH
Q 039029 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (319)
....|++..|.+.++.+.+.+..--+.+...|..+|...|+.++....+.++.+.. +....-..+...-......+.|
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHH
Confidence 99999999999999999998766567888999999999999999999999988764 4444445555555556667777
Q ss_pred HHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhc---CchhHHHHHHHHHHhC
Q 039029 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN---QEGDLAEELLREMVSK 291 (319)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 291 (319)
...+.+-+... |+...+..++..-... |...+-...+++|+..
T Consensus 302 q~~l~~Ql~r~---------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 302 QAYLTRQLRRK---------PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHhhC---------CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 77766655532 5667888888866543 4456666777777654
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=3.7e-12 Score=108.01 Aligned_cols=234 Identities=15% Similarity=0.069 Sum_probs=173.5
Q ss_pred CHHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH---------cCchhHHHHHHHHHhhC
Q 039029 44 TAVTYNTLIDGYCN-----KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---------ERKMVEADDMLKEMGEK 109 (319)
Q Consensus 44 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 109 (319)
+...|...+.+... .+++++|..+|++.++..+. +...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45555566655322 23467899999999987422 45566666555442 24478999999999988
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHH
Q 039029 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN 189 (319)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (319)
.+. +...+..+...+...|++++|...+++..+.+ +.+...+..+..++...|++++|...++++.+..+. +...+.
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 655 78888889899999999999999999999885 556778888999999999999999999999987544 233333
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHH
Q 039029 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (319)
.++..+...|++++|...++++.+...+-+...+..+..++...|++++|...+.++... .|+. ....+.+.
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~------~~~~~~l~ 482 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITG------LIAVNLLY 482 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchh------HHHHHHHH
Confidence 444456678999999999999876532224455677888889999999999999887653 2322 14556666
Q ss_pred HHHHhcCchhHHHHHHHHHHhC
Q 039029 270 QGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
..|...|+ +|...++.+.+.
T Consensus 483 ~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 483 AEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHhccHH--HHHHHHHHHHHH
Confidence 67777774 788877777663
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=4.2e-13 Score=99.96 Aligned_cols=233 Identities=14% Similarity=0.018 Sum_probs=200.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhc
Q 039029 49 NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128 (319)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (319)
+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|...|.+..++..|+.++.+-.+. ++-++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67889999999999999999998887 567789999999999999999999999998876 333665566788899999
Q ss_pred CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHH
Q 039029 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (319)
++.++|.++|+...+.. +.+......+...|.-.++++-|+.++++++..|.. ++..|+.+.-+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998874 567778888888888999999999999999999987 8899999999999999999999999
Q ss_pred HHHHhCCCCCC--hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHH
Q 039029 209 KEMDRMKVHPD--EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286 (319)
Q Consensus 209 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 286 (319)
++....-..|+ ..+|-.+.......|++..|.+.|+-.+..+. + ....++.|.-.-.+.|+.+.|..+++
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--~------h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--Q------HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc--c------hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 98876544444 45788888888999999999999999887642 2 23789999988999999999999999
Q ss_pred HHHhCCCCCC
Q 039029 287 EMVSKGITPD 296 (319)
Q Consensus 287 ~~~~~~~~~~ 296 (319)
...+. .|+
T Consensus 454 ~A~s~--~P~ 461 (478)
T KOG1129|consen 454 AAKSV--MPD 461 (478)
T ss_pred Hhhhh--Ccc
Confidence 88764 454
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=5e-12 Score=106.73 Aligned_cols=297 Identities=15% Similarity=0.043 Sum_probs=195.6
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHH----hCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcC--
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMK----ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ---GIMPT-- 79 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-- 79 (319)
|+..|-.+...+-.. +...++..|..+. ..+..+.+...|.+...+...|+++.|...|...... ...++
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 455565555555544 3434466666544 3444567778888888888888888888888887654 11222
Q ss_pred ----hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 039029 80 ----ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155 (319)
Q Consensus 80 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
..+-..+.+++-..++.+.|.+.|..+....+. -+..|-.++......++..+|...+......+ ..++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 223344566666777888888888888876432 44555555544445577778888888777653 445666666
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHhCCCCCChhh
Q 039029 156 LIFVLSKQNRMIEADQLFENFLAK-GMLPDIVMFNALIDGHCT------------NGNIERAFSLLKEMDRMKVHPDEVT 222 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (319)
+...+.+...+..|.+-|....+. ...+|+.+.-+|.+.|.+ .+..++|+.+|.++.+.. +.|...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhh
Confidence 666777777777777766555443 122455555556655442 234567777777777654 446666
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCCChHHHH
Q 039029 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYF 301 (319)
Q Consensus 223 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~ 301 (319)
-+-+.-.++..|++.+|..+|.++.+.... ...+|-.+..+|..+|+|..|+++|+...+. .-..+.....
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSD--------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhh--------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 677777778888888888888888776431 1146777888888888888888888776654 3344667777
Q ss_pred HHHHHhhhcchhhhhc
Q 039029 302 SLIEGIASVDKAAESS 317 (319)
Q Consensus 302 ~l~~~~~~~g~~~~A~ 317 (319)
.|.+++.+.|++.+|.
T Consensus 721 ~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAK 736 (1018)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 7888888888877764
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=4.4e-13 Score=111.86 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=71.4
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh
Q 039029 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80 (319)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
|+..|+.|+..||.++|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 456789999999999999999999998887 8888887777778888888888888888777665 5677
Q ss_pred hhHHHHHHHHHHcCchhH
Q 039029 81 STYNLLIHELLMERKMVE 98 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~ 98 (319)
.+|..|..+|...||...
T Consensus 84 Dtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hHHHHHHHHHHhccchHH
Confidence 889999999988888665
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.2e-12 Score=97.59 Aligned_cols=225 Identities=12% Similarity=0.056 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
--+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-++|.+..++..|+.++.+-.+. +|.++.....+.+.+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 3467889999999999999999998876 457788999999999999999999999998876 4666667778888999
Q ss_pred hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH
Q 039029 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
..++.+++.++++...+.... +++....+...|...++++-|...++++...|+. ++..|+.+.-.|.-.++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 999999999999999887543 6777777778888999999999999999999964 78899999999999999999999
Q ss_pred HHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.|.++......|+.. ...|-.+.......||+..|.+.|+-.+..+ .-....++.|.-.-.+.|+.++|.
T Consensus 380 sf~RAlstat~~~~a-----aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 380 SFQRALSTATQPGQA-----ADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred HHHHHHhhccCcchh-----hhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 999998876555542 2678889888899999999999999988763 345678888888888999999875
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=4.3e-11 Score=100.49 Aligned_cols=297 Identities=13% Similarity=0.095 Sum_probs=178.8
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...|.+|...|-+.|+.+++...+-.+...+. .|...|..+.....+.|.++.|.-.|.+.++.. +++...+-.-+.
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~ 249 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSS 249 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHH
Confidence 344455555555555555555555444333322 244455555555555555555555555555543 223333333344
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCC----------------------------------------CChHHHHHHHHHHHhc
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIV----------------------------------------PDSITYNILINGYCRC 128 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~----------------------------------------~~~~~~~~l~~~~~~~ 128 (319)
.|-+.|+...|.+.|.++.+..++ .+...++.++..+.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 444455555555444444443221 1333445555555555
Q ss_pred CChHHHHHHHHHHHHcC---------------------------CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC-
Q 039029 129 GNAKKAFSLHDEMIHKG---------------------------IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG- 180 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 180 (319)
..++.+......+.... ..++..+ ..+.-++.+.+..+....+........
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 55555555555544411 1111111 011122233333333333444444443
Q ss_pred -CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccC
Q 039029 181 -MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259 (319)
Q Consensus 181 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (319)
+.-+...|.-+..++.+.|.+..|..+|..+......-+...|-.+.+.|...|.+++|.+.|..++.. .|+..
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~--- 483 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNL--- 483 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCch---
Confidence 223466788899999999999999999999988755556778999999999999999999999999884 45442
Q ss_pred cchhhHHHHHHHHHhcCchhHHHHHHHHHHh--------CCCCCChHHHHHHHHHhhhcchhhhh
Q 039029 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVS--------KGITPDDNTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A 316 (319)
..--.|...+.+.|+.++|.+++..+.. .+..|+..........+.+.|+.++=
T Consensus 484 ---D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 484 ---DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred ---hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 4556778888999999999999998542 34667777777777888888888763
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.56 E-value=4.6e-12 Score=103.15 Aligned_cols=244 Identities=22% Similarity=0.189 Sum_probs=181.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCh-hhHHHHHHHHHHcCchhHHHHHHHHHhhC-----CC
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-----GI-MPTA-STYNLLIHELLMERKMVEADDMLKEMGEK-----GI 111 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 111 (319)
-..+...+...|...|+++.|+.+++..++. |. .|.. ...+.+...|...+++.+|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999998775 21 1233 23345777889999999999999988642 21
Q ss_pred --CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CccH-HHHHHHHHHHhhhccHHHHHHHHHHHhhC---
Q 039029 112 --VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK-----GI-QPTM-LTYTSLIFVLSKQNRMIEADQLFENFLAK--- 179 (319)
Q Consensus 112 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 179 (319)
+.-..+++.|..+|.+.|++++|...++...+- +. .|.. ..++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 123456778888999999999998888876542 11 2222 34667777889999999999998876543
Q ss_pred CCCc----cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC----C--CC-ChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 180 GMLP----DIVMFNALIDGHCTNGNIERAFSLLKEMDRMK----V--HP-DEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 180 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
-+.+ -..+++.|...|...|++++|.++++.+.... - .+ ....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1122 24678999999999999999999999875431 1 11 234678888999999999999999988654
Q ss_pred cC--CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 249 RG--IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 249 ~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
.. ..|+. +....+|..|...|.+.|+++.|.++.+....
T Consensus 438 i~~~~g~~~---~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDH---PDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCC---CchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 32 22333 23447899999999999999999999888763
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=6e-12 Score=106.24 Aligned_cols=279 Identities=15% Similarity=0.072 Sum_probs=216.9
Q ss_pred CCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhC---CCCCCH------HhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 3 SRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---GLVPTA------VTYNTLIDGYCNKGNLEMAFSFRDEMVK 73 (319)
Q Consensus 3 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
+.|-++.+...|.+.......|++..|...|...... ...++. .+-..+..+.-..++++.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555677888999999999999999999999998765 122222 2344566677778899999999999998
Q ss_pred cCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCccHHH
Q 039029 74 QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLT 152 (319)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 152 (319)
.. +--...|..++...-..+...+|...+....+..- .++..+..+...+.+...+..|.+-|....+. ...+|+++
T Consensus 525 eh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 525 EH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred HC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 74 22344555555444456788899999999887643 37778888888999999999999977777664 22357777
Q ss_pred HHHHHHHHhh------------hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh
Q 039029 153 YTSLIFVLSK------------QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220 (319)
Q Consensus 153 ~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (319)
...|...|.+ .+..+.|+++|.++++..+. +...-+-+.-.++..|++..|..+|.++.+... ...
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~ 680 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFE 680 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCC
Confidence 7777765542 35577899999998887544 677778888889999999999999999988753 356
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.+|..+.+.|...|+|..|.++|+...+.-.+-+ +......|.+++.+.|.+.+|.+.+......
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~------~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN------RSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC------CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 7889999999999999999999999888654333 3377889999999999999999998888775
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.2e-10 Score=91.51 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=143.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (319)
|-.+...|....+.++....|++..+.+ +-++.+|..-...+.-.+++++|..-|++.+...+. +...|-.+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHH
Confidence 5555666777777777777777777765 446667777777777778888888888888776433 45566666666678
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCc
Q 039029 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277 (319)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 277 (319)
.+.+++++..|++..+. .+..+..|+.....+..+++++.|.+.|+..++.....+.....+.+..-..++..- -.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 88999999999998775 455678999999999999999999999999988543333322333333344444333 3489
Q ss_pred hhHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhhcchhhhhcC
Q 039029 278 GDLAEELLREMVSKGITP-DDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 278 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
+..|..++++.++. .| ....+..+.+.-.+.|+.++|+.
T Consensus 519 ~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 519 INQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999875 34 55678888888899999999863
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=2.8e-10 Score=93.89 Aligned_cols=286 Identities=15% Similarity=0.130 Sum_probs=198.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc--
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME-- 93 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 93 (319)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++ .+..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 345667889999999999886554 444566778889999999999999999999999852 2444445555554222
Q ss_pred ---CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 94 ---RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA-KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 94 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
.+.+....+|+++...- |.......+.-.+.....+ ..+..++..+..+|+| .+|+.+-..|.........
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 25677788888887664 3333332222222222223 3455666777788865 3666666667666555556
Q ss_pred HHHHHHHhhC--------------CCCccHH--HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 039029 170 DQLFENFLAK--------------GMLPDIV--MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233 (319)
Q Consensus 170 ~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (319)
.+++...... .-+|+.. ++..+...|-..|++++|.++.++.+++. +..+..|..-.+.+-..
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 6666655432 1134443 44566778889999999999999999874 33367888889999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChH------HH--HHHHH
Q 039029 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN------TY--FSLIE 305 (319)
Q Consensus 234 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~ 305 (319)
|++.+|.+.++.+...+.. |...=+..+..+.+.|+.++|.+++......+..|-.. .| .....
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~--------DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA--------DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred CCHHHHHHHHHHHHhCChh--------hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 9999999999999886532 22344566778899999999999999988776544322 22 33456
Q ss_pred Hhhhcchhhhhc
Q 039029 306 GIASVDKAAESS 317 (319)
Q Consensus 306 ~~~~~g~~~~A~ 317 (319)
+|.+.|++..|.
T Consensus 314 a~~r~~~~~~AL 325 (517)
T PF12569_consen 314 AYLRQGDYGLAL 325 (517)
T ss_pred HHHHHhhHHHHH
Confidence 788888887764
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=1.5e-09 Score=88.58 Aligned_cols=295 Identities=12% Similarity=0.055 Sum_probs=180.3
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-------------------------------
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG------------------------------- 59 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 59 (319)
.+|..-.+.|.+.+.++-|..+|....+- .+.+...|......--..|
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 34555556666666666666666655543 2223344444444444444
Q ss_pred ---ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHH
Q 039029 60 ---NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS 136 (319)
Q Consensus 60 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (319)
+...|..++....+.... +...|...+.......+++.|..+|.+.... .|+...|.--+..---.++.++|++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 444444444444444322 3344444444444555555555555554443 2344444444444444555666666
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Q 039029 137 LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216 (319)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (319)
++++..+. ++.-...|..+...+-+.++++.|...|..-.+.. +-....|..|...-.+.|.+-+|..++++..-.+
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 66555554 23334455555666666666666666665544442 2245667777777777788888888888876654
Q ss_pred CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC--------------CCCcc--------cCcchhhHHHHHHHHHh
Q 039029 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK--------------PDHIS--------FNPTRLTYNALIQGLCK 274 (319)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------~~~~~--------~~~~~~~~~~l~~~~~~ 274 (319)
+.+...|...++.-.+.|..+.|..+..++++.... |...+ ...|....-.+...|..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 557788999999999999999999888887664211 11111 34466778888888999
Q ss_pred cCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchh
Q 039029 275 NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313 (319)
Q Consensus 275 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 313 (319)
..++++|.+.|.+.+..+ +-+..+|..+...+.+.|.-
T Consensus 830 e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCH
Confidence 999999999999999864 33567788888888888843
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=9.9e-14 Score=76.72 Aligned_cols=50 Identities=46% Similarity=0.978 Sum_probs=41.7
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN 57 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (319)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888887763
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.49 E-value=2.7e-11 Score=98.76 Aligned_cols=239 Identities=21% Similarity=0.146 Sum_probs=178.5
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhC-----C-CCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKEN-----G-LVPTAV-TYNTLIDGYCNKGNLEMAFSFRDEMVKQ-----G-- 75 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 75 (319)
..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 355666889999999999999999988764 2 123333 3445778899999999999999998763 2
Q ss_pred CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC-----CCC-CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 039029 76 IMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-----GIV-PD-SITYNILINGYCRCGNAKKAFSLHDEMIHK---- 144 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 144 (319)
.+....+++.|..+|.+.|++++|...++...+. +.. |. ...++.+...+...+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2233567788888999999999998888776432 111 12 234566778889999999999999877653
Q ss_pred -CC--CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC----C--Cc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHh-
Q 039029 145 -GI--QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG----M--LP-DIVMFNALIDGHCTNGNIERAFSLLKEMDR- 213 (319)
Q Consensus 145 -~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 213 (319)
|. +.-..+++.+...|...|++.+|.+++++++... . .+ ....++.+...|.+.+...+|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11 1224689999999999999999999999887541 1 11 235677888899999999999988887533
Q ss_pred ---CCC--CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 214 ---MKV--HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 214 ---~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
.|. +....+|..|...|...|+++.|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 12245788999999999999999999988764
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.3e-10 Score=92.93 Aligned_cols=266 Identities=10% Similarity=-0.047 Sum_probs=211.1
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
+......-..-|...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+..+. .+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 44455556667778899999999999998875 567778888888999999999888888888887544 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHH
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
-|...|+..+|.+.|.+....+ +.-...|..+...|.-.|..++|...+..+-+.-.. ...-+.-+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHH
Confidence 9999999999999999987754 223568889999999999999999999877665111 11112234445778899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc--CCCCCCcccCcchhhHHHHHHHHHhcCchhHH
Q 039029 204 AFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR--GIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 281 (319)
|..+|.+..... +.|+...+-+.-.....+.+.+|..+|+..+.. ...+... -...+++.|..+|.+.+.+++|
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~---~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI---FWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc---chhHHHHhHHHHHHHHhhHHHH
Confidence 999999988763 556778888888888889999999999988732 1111111 1335789999999999999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 282 EELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
+..+++.+.. .+-+..++..+.-.+...|+++.|++
T Consensus 475 I~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 475 IDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHH
Confidence 9999999986 35688899999999999999999874
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.47 E-value=2.1e-10 Score=89.54 Aligned_cols=233 Identities=13% Similarity=-0.007 Sum_probs=152.6
Q ss_pred CChHHHHHHHHHHHHcC-CCc--ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHH
Q 039029 59 GNLEMAFSFRDEMVKQG-IMP--TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135 (319)
Q Consensus 59 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (319)
+..+.++.-+.+++... ..| ....|..+...+...|+.++|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777777542 112 2345777777888889999999999988887654 7788888999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Q 039029 136 SLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215 (319)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
..|++..+.. +.+..++..+..++...|++++|.+.++...+..+. +. ........+...++.++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999988764 445677888888888889999999999988876433 22 12222223445678899998887654322
Q ss_pred CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC
Q 039029 216 VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295 (319)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 295 (319)
.|+...+ .+. ....|+...+ ..+..+.+.. ......-+....+|..+...+.+.|++++|...|++..+.+ +|
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~-~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGA-TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 2332221 222 2334555443 3444444321 00000001123578888999999999999999999998764 34
Q ss_pred ChHHHHH
Q 039029 296 DDNTYFS 302 (319)
Q Consensus 296 ~~~~~~~ 302 (319)
|...+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 5555544
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2.4e-13 Score=75.16 Aligned_cols=50 Identities=44% Similarity=0.741 Sum_probs=48.0
Q ss_pred cchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhh
Q 039029 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309 (319)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (319)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67799999999999999999999999999999999999999999999874
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=4.1e-10 Score=80.17 Aligned_cols=208 Identities=16% Similarity=0.059 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
.+...|...|...|+...|..-+++..+..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34566677788889999999989888887654 77888888888899999999999998888774 55677888888888
Q ss_pred hhhccHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHH
Q 039029 161 SKQNRMIEADQLFENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (319)
+..|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 8888999999988888775221 125678888888888899999999998888764 23345667778888888889888
Q ss_pred HHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHH
Q 039029 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301 (319)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 301 (319)
..+++.....+. ++. .+....++.-.+.|+.+.+-+.=..+... -|....+-
T Consensus 193 r~~~~~~~~~~~-~~A-------~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 193 RLYLERYQQRGG-AQA-------ESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHHHHhccc-ccH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 888888877653 333 56666777777888888887776666653 45554443
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.2e-10 Score=88.62 Aligned_cols=224 Identities=14% Similarity=0.109 Sum_probs=180.9
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHH
Q 039029 20 MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (319)
+.-.|+...|.+.|+..+.....++ ..|.-+...|....+.++..+.|+...+.+. -+..+|..-.+...-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHH
Confidence 3456889999999999988754433 3377788889999999999999999998864 3777888888888889999999
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
..=|++..+..+. +...|-.+.-+..+.+.++++...|++...+ +|..+..|+....++..+++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999987655 7778888888888999999999999999887 6777899999999999999999999999998875
Q ss_pred CCC-----cc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 180 GML-----PD--IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 180 ~~~-----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
... .+ +.+--.++-. .-.+++..|..++++..+.+ +-....+..|...-.+.|+.++|+++|++....
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 322 11 1111222221 23489999999999999875 334567899999999999999999999997654
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=9.1e-10 Score=78.46 Aligned_cols=198 Identities=14% Similarity=0.048 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (319)
+...+.-.|...|+...|.+-+++.++.+ +.+..++..+...|.+.|+.+.|.+.|++..+..+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 45556667777888888888888887775 335667777777788888888888888887776554 6777777777788
Q ss_pred hcCChHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHH
Q 039029 127 RCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAF 205 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (319)
..|++++|...|++....- ..-...+|..+.-+..+.|+.+.|...|++.++.... ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888777652 1223457777777777788888888888877776443 3445566677777778888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
..++.....+. ++..+.-..|+.-...|+-+.+.++=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777766553 6777777677777777887777776666655
No 66
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=5.1e-09 Score=85.66 Aligned_cols=298 Identities=12% Similarity=0.057 Sum_probs=196.1
Q ss_pred CCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChh
Q 039029 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP--TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81 (319)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
.|+.-+...|-.=...|-+.|..-.+..+.......|+.- -..+|..-.+.|.+.+.++-|..+|...++-- +.+..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhH
Confidence 3444444444444445555555555555555554444321 22356666667777777777777777777653 33555
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
.|......--..|..++...++++....-++ ....|......+-..|+...|..++....+.. +.+...+...+..-.
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhh
Confidence 6666655555567777777777777766433 55666677777777888888888888887764 446677777778888
Q ss_pred hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHH
Q 039029 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEAR 240 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 240 (319)
....++.|..+|.+.... .|+..+|.--+..-...+..++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|.
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888888877664 456666666666556677788888888777664 344 345666677777777777777
Q ss_pred HHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
+.|..-.+. -|..+ ..|-.+...=-+.|..-+|..++++..-.+ +-+...|...++.-.+.|..+.|.
T Consensus 706 ~aY~~G~k~--cP~~i------pLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 706 EAYLQGTKK--CPNSI------PLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHhcccc--CCCCc------hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHH
Confidence 776654432 23332 567777776677778888888888877653 346667777788777888777664
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=7.3e-10 Score=86.50 Aligned_cols=219 Identities=14% Similarity=-0.002 Sum_probs=158.0
Q ss_pred cCChHHHHHHHHHHHhCCC-CC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHH
Q 039029 23 EGRLEEASRMLEQMKENGL-VP--TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (319)
.+..+.++.-+.++..... .| ....|..+...+...|+.+.|...|++.++.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3556778888888876421 22 24568888889999999999999999999875 34678999999999999999999
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
...|++..+..+. +..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999987554 67788889999999999999999999998874 33222222223345677899999999775543
Q ss_pred CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CC---CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM---KV---HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
. .|+...+ .+.. ...|+...+ ..+..+.+. .+ +.....|..+...+...|++++|...|+++.+.+
T Consensus 195 ~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2232222 2222 334554433 244444321 11 1123578889999999999999999999999854
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=5.4e-10 Score=87.49 Aligned_cols=239 Identities=13% Similarity=0.082 Sum_probs=181.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHH
Q 039029 24 GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDML 103 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 103 (319)
.++..|.+.-+...... .-++.....-.......|++++|.+.|.+.+.....-....|| +...+-..|+.++|++.|
T Consensus 470 k~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 470 KDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCF 547 (840)
T ss_pred cchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHH
Confidence 45666666666555432 2233333333344456789999999999999764332333333 334567789999999999
Q ss_pred HHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc
Q 039029 104 KEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183 (319)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (319)
-++... ...+..+...+.+.|-...+..+|++++.+.... ++.|+.+.+.+...|-+.|+-.+|.+.+-.--+. ++.
T Consensus 548 ~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~ 624 (840)
T KOG2003|consen 548 LKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPC 624 (840)
T ss_pred HHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCc
Confidence 887653 2237788888899999999999999999888766 6778999999999999999999998887654444 455
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HcCCcHHHHHHHHHHHHHcCCCCCCcccCcch
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR-CRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 262 (319)
+..+...|...|....-++++...|++..- ++|+..-|..++..| .+.|++++|..+++...+. |+.+.
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedl 694 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDL 694 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------Cccch
Confidence 788888899999999999999999998755 479999999988666 4689999999999998875 23345
Q ss_pred hhHHHHHHHHHhcCc
Q 039029 263 LTYNALIQGLCKNQE 277 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~ 277 (319)
.++..|++.+...|-
T Consensus 695 dclkflvri~~dlgl 709 (840)
T KOG2003|consen 695 DCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhccccc
Confidence 788888888776653
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.3e-09 Score=81.47 Aligned_cols=285 Identities=12% Similarity=0.019 Sum_probs=152.6
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
|+.....+...+...|+.++|+..|++....++- +........-.+.+.|+++....+...+.... .-+...|..-+.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 3444445555555555555555555554442211 11111122222334445555444444443321 112222333333
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
.....+++..|+.+-++.++.... +...+-.-...+...|++++|.-.|+...... |-+...|..++.+|...|.+.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 344455566666666655554322 33344434455666677777776676665542 3456677777777777777777
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHH-HHHhc-CCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHH
Q 039029 169 ADQLFENFLAKGMLPDIVMFNALI-DGHCT-NGNIERAFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQ 245 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (319)
|...-+...+. .+-+..+...+. ..+.. ..--++|..+++..... .|+ ....+.+...+...|..+.+..++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 66655554443 122344444332 22221 12235666666665543 344 33556677778888888888888888
Q ss_pred HHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcc
Q 039029 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311 (319)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 311 (319)
.+.. .| |....+.|.+.+...+.+++|++.|...+.. .|+...-..-++-+.+..
T Consensus 464 ~L~~--~~-------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 464 HLII--FP-------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHhh--cc-------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHhcc
Confidence 7763 33 3367788888888888888888888887764 454443333334444433
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=4.2e-09 Score=87.11 Aligned_cols=272 Identities=16% Similarity=0.170 Sum_probs=187.5
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCcChhhHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN-----KGNLEMAFSFRDEMVKQGIMPTASTYN 84 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
..........+.+.|+.++|..+|..+.+.++. +..-|..+..+..- ..+.+....+|+++...- |......
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~ 114 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPR 114 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchh
Confidence 444667788999999999999999999998633 44444455544422 235677888999887663 3433333
Q ss_pred HHHHHHHHcCch-hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C----------CCcc
Q 039029 85 LLIHELLMERKM-VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK----G----------IQPT 149 (319)
Q Consensus 85 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~ 149 (319)
.+.-.+.....+ ..+..++..+..+|+++ +|+.+-..|.......-..+++...... + -+|+
T Consensus 115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~ 191 (517)
T PF12569_consen 115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS 191 (517)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCch
Confidence 333223222233 34556677777888653 5666666666555555555555555432 1 1344
Q ss_pred H--HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 039029 150 M--LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM 227 (319)
Q Consensus 150 ~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (319)
. .++..+...|...|++++|++++++.+++.+. .+..|..-.+.+-+.|++.+|.+.++.....+. -|...-+..+
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~a 269 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHH
Confidence 4 34566677888999999999999999998533 478888889999999999999999999998763 4666777788
Q ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhH--HHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY--NALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
..+.+.|+.++|.+++....+.+..|..- .....-.| .....+|.+.|++..|++-|....+
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~-L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTREDVDPLSN-LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCCCcccC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88999999999999999988766533220 00001133 3457789999999999887776654
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=3.9e-08 Score=77.67 Aligned_cols=285 Identities=14% Similarity=0.171 Sum_probs=176.7
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CcChhhH
Q 039029 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GI-MPTASTY 83 (319)
Q Consensus 6 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~ 83 (319)
..|+...|++.|..=.+-..++.|..+|+...- +.|++..|.-....=.+.|....+..+|...++. |- ..+...+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 468888888888888888888888888888775 3477777777777666777766666666665542 10 0011111
Q ss_pred HHHHHHHHHcCchhHHHHHH--------------------------------------------HHHhhCCCCCChHHHH
Q 039029 84 NLLIHELLMERKMVEADDML--------------------------------------------KEMGEKGIVPDSITYN 119 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~--------------------------------------------~~~~~~~~~~~~~~~~ 119 (319)
.++...-.++..++.|.-+| +.+.+.++ .|-.+|-
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWf 326 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHH
Confidence 22111111111222211111 12222222 2555565
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCc--------------------------------------------cHHHHHH
Q 039029 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQP--------------------------------------------TMLTYTS 155 (319)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------------------------~~~~~~~ 155 (319)
-.++.-...|+.+...++|+..... ++| ...||..
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHH
Confidence 5666666666666666666665543 232 2233333
Q ss_pred HHHHHh----hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 039029 156 LIFVLS----KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231 (319)
Q Consensus 156 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (319)
+--.|+ ++.++..|.+++...+.. -|-..+|...|..-.+.+.++.+..++++..+.+ +.+..+|......-.
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHH
Confidence 322222 345555666666554433 4566777777777788888999999999988876 456778888888888
Q ss_pred cCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 039029 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305 (319)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 305 (319)
..|+.+.|..+|.-+++.... + -....|...|.-=...|.+++|..+++++++. .+-..+|.+...
T Consensus 483 ~LgdtdRaRaifelAi~qp~l-d-----mpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAISQPAL-D-----MPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred HhhhHHHHHHHHHHHhcCccc-c-----cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHH
Confidence 889999999999988875321 1 12256777777777899999999999999886 344446655544
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.2e-08 Score=79.05 Aligned_cols=297 Identities=11% Similarity=0.023 Sum_probs=210.7
Q ss_pred CCCCcccHHHHHHHHh--ccCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhh
Q 039029 6 VQPDSYTYGSFVSGMC--KEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST 82 (319)
Q Consensus 6 ~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (319)
++|+..+...-+.+++ -.++-..|...+-.+... -.+-++.....+..++...|+.++|+..|+...-.++ -+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhh
Confidence 3444444444444443 334444444444333332 2556788889999999999999999999998876532 13333
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 039029 83 YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (319)
.....-.+.+.|+.+....+...+.... +-+...|..-+......++++.|+.+-++.++.+ +.+...+..-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3444445667888888888877776542 1255556666666777889999999999888764 3345566666677888
Q ss_pred hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHH-cCCcHHHHH
Q 039029 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLM-HGRC-RQGKVEEAR 240 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~ 240 (319)
.+++.+|.-.|+..+... +-+...|.-|+.+|...|.+.+|..+-+...+. .+-+..+...+. ..+. ....-++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999888763 236889999999999999999998877765543 234555555552 3333 233467888
Q ss_pred HHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
+++++.++ +.|+.. ...+.+...+...|..+.++.++++.+. ..||....+.|.+.+.....+++|.
T Consensus 425 kf~ek~L~--~~P~Y~------~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYT------PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred HHHHhhhc--cCCccH------HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHH
Confidence 88888776 456543 5677888899999999999999999887 4789999999999998888888775
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=6.5e-08 Score=78.31 Aligned_cols=298 Identities=12% Similarity=0.048 Sum_probs=183.9
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCC-CCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGL-VPTA-VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
..|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3466666777778888888777777665432 1222 222333445677899999999999998874 334434432 22
Q ss_pred HHHH----cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc
Q 039029 89 ELLM----ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164 (319)
Q Consensus 89 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
.+.. .+....+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222 3445555555554211 122234455566778899999999999999999875 556778888899999999
Q ss_pred cHHHHHHHHHHHhhCCCC-ccH--HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHcCCcHH
Q 039029 165 RMIEADQLFENFLAKGML-PDI--VMFNALIDGHCTNGNIERAFSLLKEMDRMKV-HPDEVTY-N--TLMHGRCRQGKVE 237 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~ 237 (319)
++++|...+++....... |+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999998876332 232 3455788889999999999999999864322 1111111 1 2233334445433
Q ss_pred HHHHHHHHHHHcC--CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCC------CChHHHHHHHH--Hh
Q 039029 238 EARRLLDQMKRRG--IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT------PDDNTYFSLIE--GI 307 (319)
Q Consensus 238 ~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~--~~ 307 (319)
.+.++ +.+.... ..+.. ...........++...|+.+.|..+++.+...... ....+-..++. ++
T Consensus 243 ~~~~w-~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 243 VGDRW-EDLADYAAWHFPDH----GLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred hHHHH-HHHHHHHHhhcCcc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 33332 2221110 00111 11122235677888999999999999998764222 11122333444 45
Q ss_pred hhcchhhhhc
Q 039029 308 ASVDKAAESS 317 (319)
Q Consensus 308 ~~~g~~~~A~ 317 (319)
...|++++|.
T Consensus 318 ~~~g~~~~A~ 327 (355)
T cd05804 318 FAEGNYATAL 327 (355)
T ss_pred HHcCCHHHHH
Confidence 6888888875
No 74
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=3.4e-08 Score=78.03 Aligned_cols=253 Identities=13% Similarity=0.088 Sum_probs=127.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHH
Q 039029 56 CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF 135 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (319)
-..|+...|.++|++...- .|+...|.+.+..-.+-+.++.|..+|+...-. .|++.+|-.....-.+.|+...+.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 3345555555555555543 455666666666655666666666666665543 255555655555555666666666
Q ss_pred HHHHHHHHc-C-CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCC--------------------------------
Q 039029 136 SLHDEMIHK-G-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM-------------------------------- 181 (319)
Q Consensus 136 ~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------------- 181 (319)
.+|....+. | -..+...+.+....=.++..++.|.-+|+-.++.-+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 666655543 1 011122333333333445556666666665544311
Q ss_pred -----------CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh--hHHHHH-----HHH---HcCCcHHHHH
Q 039029 182 -----------LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV--TYNTLM-----HGR---CRQGKVEEAR 240 (319)
Q Consensus 182 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~-----~~~---~~~g~~~~a~ 240 (319)
+.|..+|--.++.-...|+.+...++|++.... ++|-.. .|...+ -++ ....+.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 012333444444444556666666666665543 333211 111111 111 2345555566
Q ss_pred HHHHHHHHcCCCCCC-cc------------------------------cCcchhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 241 RLLDQMKRRGIKPDH-IS------------------------------FNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~-~~------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
++++..++ +-|.. ++ .-|-..+|...|..=.+.++++....++++.+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66655554 22221 11 23444556666666666666777777777766
Q ss_pred hCCCCCChHHHHHHHHHhhhcchhhhh
Q 039029 290 SKGITPDDNTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 290 ~~~~~~~~~~~~~l~~~~~~~g~~~~A 316 (319)
..+ +-|-.+|......-...|+.+.|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHH
Confidence 643 22455666665555566666554
No 75
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3.2e-09 Score=85.39 Aligned_cols=260 Identities=16% Similarity=0.058 Sum_probs=195.7
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
...+.+.|++.+|.-.|+...+.++. +...|..|.......++-..|+..+++.++... -+....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 34567899999999999999887644 788999999999999999999999999998863 3778888899999999999
Q ss_pred hHHHHHHHHHhhCCCCC--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhhhccHH
Q 039029 97 VEADDMLKEMGEKGIVP--------DSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMI 167 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
..|.+.++..+...++- +...-.. ..+.....+....++|-++... +..+|+.+...|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999886653220 0000000 1112222344555666555543 44478889999999999999999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
.|.+.|+.++...+. |..+||.|...++...+.++|...|++..+. +|+ +.+...|.-+|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999987544 7899999999999999999999999999985 565 557777999999999999999999887
Q ss_pred HHcCCC---CCCcccCcchhhHHHHHHHHHhcCchhHHHHH
Q 039029 247 KRRGIK---PDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284 (319)
Q Consensus 247 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (319)
+....+ +... ..++-..|..|=.++...++.|.+.++
T Consensus 525 L~mq~ks~~~~~~-~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKA-PMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccC-CcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 654222 1111 112335677776667777776655443
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=5.1e-08 Score=78.93 Aligned_cols=271 Identities=12% Similarity=-0.004 Sum_probs=167.6
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC----NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
...+...|++++|...+++..+..+ .+...+.. ...+. ..+....+.+.+.... ...+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHH
Confidence 4456778999999999999887642 24444442 22222 2445555555555411 1112233444566678889
Q ss_pred cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CccH--HHHHHHHHHHhhhccHHHH
Q 039029 93 ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI-QPTM--LTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a 169 (319)
.|++++|...+++..+..+. +...+..+..++...|++++|...+++...... .++. ..+..+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999987644 677888899999999999999999999887532 1232 3455678889999999999
Q ss_pred HHHHHHHhhCCC-CccHHHH-H--HHHHHHhcCCcHHHHHHH---HHHHHhCCC-CCChhhHHHHHHHHHcCCcHHHHHH
Q 039029 170 DQLFENFLAKGM-LPDIVMF-N--ALIDGHCTNGNIERAFSL---LKEMDRMKV-HPDEVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 170 ~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
..++++...... .+..... + .++..+...|....+.+. ......... ............++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999865432 1122111 1 233333444433332222 121111100 1111222356677788999999999
Q ss_pred HHHHHHHcCCCCCCc-ccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 242 LLDQMKRRGIKPDHI-SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 242 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.++.+.......+.. .....+...-....++...|++++|.+.+.+....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999987643221000 00001122233344567899999999999988765
No 77
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.5e-08 Score=81.70 Aligned_cols=249 Identities=16% Similarity=0.084 Sum_probs=183.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHH
Q 039029 54 GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (319)
-+.+.|++.+|.-.|+..++.+ |-+...|..|...-...++-..|+..+++..+..+. +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4567888999999999998886 347889999998888899999999999999988655 78888899999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHH-------HHHhhhccHHHHHHHHHHHh-hCCCCccHHHHHHHHHHHhcCCcHHHHH
Q 039029 134 AFSLHDEMIHKGIQPTMLTYTSLI-------FVLSKQNRMIEADQLFENFL-AKGMLPDIVMFNALIDGHCTNGNIERAF 205 (319)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (319)
|++.++.-..... |-...-..-. ..+.....+....++|-++. ..+..+|+.+...|.-.|--.|++++|.
T Consensus 372 Al~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999988865431 1000000000 11122223334444454444 4444478888888888899999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHH
Q 039029 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 285 (319)
+.|+.+.... +-|..+||.|...++...+.++|...|.++++ +.|... .+...|.-.|...|.+++|.+.|
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yV------R~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYV------RVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCee------eeehhhhhhhhhhhhHHHHHHHH
Confidence 9999998764 44677999999999999999999999999998 567764 56677888899999999999887
Q ss_pred HHHHhC---C------CCCChHHHHHHHHHhhhcchhh
Q 039029 286 REMVSK---G------ITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 286 ~~~~~~---~------~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
-..+.. + -.++...|..|=.++.-.++.|
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 776542 1 1223345655555555555544
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=2.3e-07 Score=77.52 Aligned_cols=301 Identities=19% Similarity=0.183 Sum_probs=173.9
Q ss_pred CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-hhhH
Q 039029 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT-ASTY 83 (319)
Q Consensus 5 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 83 (319)
.+.-|...|..+.-++...|++..+.+.|++....-. -....|..+...+...|.-..|..+++........|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3445677788888888888888888888888765322 2444566666666666666666666655544321122 1222
Q ss_pred HHHHHHHH-HcCchh--------------------------------------------------HHHHHHHHHhhCCCC
Q 039029 84 NLLIHELL-MERKMV--------------------------------------------------EADDMLKEMGEKGIV 112 (319)
Q Consensus 84 ~~l~~~~~-~~~~~~--------------------------------------------------~a~~~~~~~~~~~~~ 112 (319)
-.....|. +.+..+ ++.+.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111111 112222 233333333333222
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCC----------
Q 039029 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML---------- 182 (319)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 182 (319)
|+.....+.--|+-.++.+.|.+..++..+.+-..+...|..+...+...+++.+|+.+.+.....-..
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 222222333344555666666666666666533445566666666666666666666555443322000
Q ss_pred --------------------------------------------------------------------------------
Q 039029 183 -------------------------------------------------------------------------------- 182 (319)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (319)
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence
Q ss_pred ------cc------HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 183 ------PD------IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 183 ------~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
|+ ...|......+.+.+..+++...+.+..... +.....|......+...|.+++|.+.|.....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-- 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA-- 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence 00 0111222233333444444444444433321 22333445555666677888889988888776
Q ss_pred CCCCCcccCcchhhHHHHHHHHHhcCchhHHHH--HHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE--LLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
+.|+.+ ....++...+.+.|+...|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.
T Consensus 713 ldP~hv------~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 713 LDPDHV------PSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred cCCCCc------HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence 567664 678899999999999888888 999999875 447889999999999999999875
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.18 E-value=6.3e-08 Score=85.76 Aligned_cols=236 Identities=10% Similarity=0.080 Sum_probs=186.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---cChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIM---PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYN 119 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (319)
+...|...|....+.++.++|.++.++.+.. ++. --...|.+++..-..-|.-+...++|+++.+.. ..-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 5678999999999999999999999998864 211 123467777777777788888999999998762 1345788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHhcC
Q 039029 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PDIVMFNALIDGHCTN 198 (319)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 198 (319)
.|...|.+.+.+++|-++++.|.++ +.-....|...+..+.+.++-+.|..++.++++.-+. -........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999987 3457789999999999999999999999998876322 1244555666667889
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCch
Q 039029 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (319)
|+.+++..+|+...... +-....|+.+++.-.++|+.+.+..+|++++..++.|.... ..|...+..=-..|+-
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK-----fffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK-----FFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH-----HHHHHHHHHHHhcCch
Confidence 99999999999987753 44677899999999999999999999999999988877532 4566666655566776
Q ss_pred hHHHHHHHHH
Q 039029 279 DLAEELLREM 288 (319)
Q Consensus 279 ~~A~~~~~~~ 288 (319)
..+..+=.++
T Consensus 1688 ~~vE~VKarA 1697 (1710)
T KOG1070|consen 1688 KNVEYVKARA 1697 (1710)
T ss_pred hhHHHHHHHH
Confidence 5555444443
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=5.4e-09 Score=80.62 Aligned_cols=256 Identities=18% Similarity=0.174 Sum_probs=167.3
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
++.+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556799999987666 333332334455667788888999877554 3333333 56666665555555433445
Q ss_pred hHHHHHHHHHhhCCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 97 VEADDMLKEMGEKGIV-PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
+.+..-+++....... .+..........+...|++++|++++... .+.......+.++.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544433322 23333333446677789999999988643 3667778888999999999999999999
Q ss_pred HhhCCCCccHHHHHHHHHHHh----cCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 039029 176 FLAKGMLPDIVMFNALIDGHC----TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 251 (319)
|.+.. .| .+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-- 230 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK-- 230 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 98763 23 33333444433 345689999999998764 4678888999999999999999999999997653
Q ss_pred CCCCcccCcchhhHHHHHHHHHhcCch-hHHHHHHHHHHhCCCCCCh
Q 039029 252 KPDHISFNPTRLTYNALIQGLCKNQEG-DLAEELLREMVSKGITPDD 297 (319)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 297 (319)
.|+. ..++..++.+....|+. +.+.+.+.++... .|+.
T Consensus 231 ~~~~------~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 231 DPND------PDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp -CCH------HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred ccCC------HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 3333 36777788888888888 6677888888764 4553
No 81
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=2.1e-07 Score=72.90 Aligned_cols=214 Identities=7% Similarity=-0.014 Sum_probs=157.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG-NLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
+..+-..+...++.++|+.+..++.+.+.. +..+|+....++...+ ++++++..++.+.+.+.+ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 445556667788999999999999986533 5557777766777777 679999999999987643 5566776655566
Q ss_pred HcCch--hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh---ccH
Q 039029 92 MERKM--VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ---NRM 166 (319)
Q Consensus 92 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 166 (319)
+.++. +++..+++++.+...+ +..+|+...-++...|+++++++.++++.+.+. .+...|+....++.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccc
Confidence 66653 6788899899888765 889999999999999999999999999999863 4666777666665544 222
Q ss_pred ----HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC----CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 039029 167 ----IEADQLFENFLAKGMLPDIVMFNALIDGHCTN----GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR 232 (319)
Q Consensus 167 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (319)
++......+++...+. +...|+.+...+... +...++...+.+..+.+ +.+......|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4566677677766443 677788777777663 34466888888876643 3456677888888875
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=5.7e-08 Score=72.29 Aligned_cols=206 Identities=15% Similarity=0.132 Sum_probs=143.6
Q ss_pred CCCCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh
Q 039029 1 MKSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA 80 (319)
Q Consensus 1 M~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
|-..|+..-.--+.+++..+.+..++..|++++..-.++..+ +....+.+..+|....++..|-..++++-.. .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 555677776777899999999999999999999988877533 7778889999999999999999999998876 3454
Q ss_pred hhHHH-HHHHHHHcCchhHHHHHHHHHhhCCCCCChH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHH
Q 039029 81 STYNL-LIHELLMERKMVEADDMLKEMGEKGIVPDSI--TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157 (319)
Q Consensus 81 ~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (319)
.-|.. -...+.+.+.+..|+++...|.+. ++.. +...-.......+++..+..+.++....+ +..+.....
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 44432 345677888999999999888753 1221 11111223345567777777776665332 344444545
Q ss_pred HHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Q 039029 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (319)
-...+.|+++.|.+-|+...+-+.-.....|+..+.. .+.|+.+.|.+...++.+.|+
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGI 209 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh
Confidence 5556788888888888877765333345566655544 456778888888877776654
No 83
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.15 E-value=5.5e-09 Score=88.16 Aligned_cols=256 Identities=20% Similarity=0.293 Sum_probs=180.8
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCC
Q 039029 31 RMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110 (319)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (319)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++..-...++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999998 9999988888888889999998888888877765
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCccHHHHH--------------HHHHHHhhhccHHHH
Q 039029 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIH-------KGIQPTMLTYT--------------SLIFVLSKQNRMIEA 169 (319)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~--------------~l~~~~~~~~~~~~a 169 (319)
.|.+.+|..|+.+|...||...-..+-+.+.. .|+.....-+- ..+....-.|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 57889999999999999997652222221221 22211111111 112222334555555
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHhcCC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNG-NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
.+++..+...... .+ +..+++-+.... .+++...+.....+ .|++.++..++..-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~-~p--~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-AP--FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCccccc-ch--HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 5555444322111 11 111244443332 23443333333333 58999999999999999999999999999999
Q ss_pred cCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhh
Q 039029 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
.|.+.+. .-|..++-+ .++..-+..+++-|...|+.|+..|+...+..+...|...
T Consensus 233 ~gfpir~-------HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 233 KGFPIRA-------HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred cCCCccc-------ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 9987665 455566544 8888999999999999999999999999988887755543
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=4e-09 Score=81.30 Aligned_cols=239 Identities=15% Similarity=0.105 Sum_probs=157.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHH
Q 039029 54 GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (319)
-+.-.|++..++.-.+ ...............+.+++...|+.+.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3455788888886665 322222233455567788888899877544 4443333 5666666666555544455555
Q ss_pred HHHHHHHHHHcCCC-ccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 039029 134 AFSLHDEMIHKGIQ-PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212 (319)
Q Consensus 134 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
++.-+++....... .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65555544433322 23333344445677889999999888653 356777788899999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHc----CCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHH
Q 039029 213 RMKVHPDEVTYNTLMHGRCR----QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288 (319)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 288 (319)
+.+ .| .+...+..++.. .+.+.+|..+|+++.+. . .+++.+.+.+..++...|++++|.+++++.
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~-------~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F-------GSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S---------SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 753 33 444555555543 34699999999998764 1 234578899999999999999999999998
Q ss_pred HhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 289 VSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
...+ +-++.++..++-.....|+..+
T Consensus 228 l~~~-~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 228 LEKD-PNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp CCC--CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhc-cCCHHHHHHHHHHHHHhCCChh
Confidence 8753 3467778888888888888743
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.12 E-value=1.7e-07 Score=83.14 Aligned_cols=233 Identities=13% Similarity=0.106 Sum_probs=185.3
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC-----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP-----TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTY 83 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (319)
+...|-..|....+.++.++|.++++++... +.+ ..-.|.++++.-...|.-+...++|+++.+. .-....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 4566888899999999999999999998865 322 2237888888888889889999999999876 2245678
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHh
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP--TMLTYTSLIFVLS 161 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 161 (319)
..|...|.+.+.+++|.++++.|.++ +......|...+..+.+..+-+.|..++.+..+. +|- ........+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHh
Confidence 89999999999999999999999876 3357889999999999999999999999998875 222 2345566666677
Q ss_pred hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHcCCcHHHH
Q 039029 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE--VTYNTLMHGRCRQGKVEEA 239 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 239 (319)
+.|+.+.+..+|+......+. -...|+.+++.-.++|+.+.++.+|+++...++.|-. ..|...+..=-+.|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 899999999999998887443 5789999999999999999999999999998876653 3455555555566665555
Q ss_pred HHHHHHHH
Q 039029 240 RRLLDQMK 247 (319)
Q Consensus 240 ~~~~~~~~ 247 (319)
+.+=.++.
T Consensus 1691 E~VKarA~ 1698 (1710)
T KOG1070|consen 1691 EYVKARAK 1698 (1710)
T ss_pred HHHHHHHH
Confidence 55444443
No 86
>PF12854 PPR_1: PPR repeat
Probab=99.11 E-value=8.9e-11 Score=58.33 Aligned_cols=34 Identities=44% Similarity=0.962 Sum_probs=29.7
Q ss_pred CCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH
Q 039029 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK 37 (319)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 37 (319)
+|++||..+|+++|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5888999999999999999999999999998873
No 87
>PLN02789 farnesyltranstransferase
Probab=99.10 E-value=7.4e-07 Score=69.87 Aligned_cols=229 Identities=10% Similarity=0.088 Sum_probs=166.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-chhHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER-KMVEADDMLKEMGEKGIVPDSITYNILINGYC 126 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (319)
+..+-..+...++.++|+.+..++++... -+..+|+....++...| ++++++..++++.+..++ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 44444555567789999999999998752 25566766666666777 579999999999988665 6677887766666
Q ss_pred hcCCh--HHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC---Cc-
Q 039029 127 RCGNA--KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN---GN- 200 (319)
Q Consensus 127 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~- 200 (319)
+.|+. ++++.+++++.+.+ +-+..+|+....++...|+++++++.++++++.++. +...|+.......+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 77763 67899999998875 557889999999999999999999999999998765 666776665555443 22
Q ss_pred ---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC----CcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHH
Q 039029 201 ---IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ----GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273 (319)
Q Consensus 201 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (319)
.++......++.... +-+...|+.+...+... +...+|.+.+.++... .|. +......|+..|.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~------s~~al~~l~d~~~ 266 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSN------HVFALSDLLDLLC 266 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCC------cHHHHHHHHHHHH
Confidence 245666776666654 45677888888888763 4456788888887663 232 2367788888887
Q ss_pred hcC------------------chhHHHHHHHHHH
Q 039029 274 KNQ------------------EGDLAEELLREMV 289 (319)
Q Consensus 274 ~~g------------------~~~~A~~~~~~~~ 289 (319)
... ..++|.++++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 632 2366888888874
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=2.7e-06 Score=70.07 Aligned_cols=82 Identities=18% Similarity=0.081 Sum_probs=48.5
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 039029 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305 (319)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 305 (319)
++..+-..|+++.|..+++.++.+ .|+.+ ..|..=.+.+.+.|+.++|..++++..+.+ .||...-..-..
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTli------Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLI------ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHH------HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 456666777777777777777663 33321 344445567777777777777777777653 234333333444
Q ss_pred Hhhhcchhhhh
Q 039029 306 GIASVDKAAES 316 (319)
Q Consensus 306 ~~~~~g~~~~A 316 (319)
-..+....++|
T Consensus 448 YmLrAn~i~eA 458 (700)
T KOG1156|consen 448 YMLRANEIEEA 458 (700)
T ss_pred HHHHccccHHH
Confidence 44555555555
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=1.4e-06 Score=71.65 Aligned_cols=296 Identities=15% Similarity=0.091 Sum_probs=165.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
.....-.+...|+-++|.+......+..+. +..+|+.+.-.+....++++|++.|......+ +-|...+..+...-++
T Consensus 44 lAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 44 LAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQ 121 (700)
T ss_pred HHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 333333445567777777777766664433 66677777777777778888888888887765 3366677766666677
Q ss_pred cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCccHHHHHHHHH------HHhhhcc
Q 039029 93 ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQPTMLTYTSLIF------VLSKQNR 165 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~ 165 (319)
.++++.......++.+..+. ....|..+..++.-.|++..|..++++..+.. ..|+...+..... ...+.|.
T Consensus 122 mRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~ 200 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS 200 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 77777777776666665332 55567777777777777777777777776653 2344444333221 1233444
Q ss_pred HHHHHHHHHHHhhCCCCccHH-HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHH-HHH-cCCc-------
Q 039029 166 MIEADQLFENFLAKGMLPDIV-MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH-GRC-RQGK------- 235 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~-~~g~------- 235 (319)
.+.|.+.+...... + .|-. .-..-...+.+.+++++|..++..+... .||...|...+. ++. -.+.
T Consensus 201 ~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 201 LQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred HHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44444444332221 1 1111 1122233444555555555555555443 233333322221 111 1111
Q ss_pred ---------------------------HHHHHHHHHHHHHcCCCCCCcc-------------------------------
Q 039029 236 ---------------------------VEEARRLLDQMKRRGIKPDHIS------------------------------- 257 (319)
Q Consensus 236 ---------------------------~~~a~~~~~~~~~~~~~~~~~~------------------------------- 257 (319)
.+..-+++....+.|+++-..+
T Consensus 277 y~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 277 YAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred HHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 1111222222333332221111
Q ss_pred --------cCcchhhHH--HHHHHHHhcCchhHHHHHHHHHHhCCCCCChHH-HHHHHHHhhhcchhhhhc
Q 039029 258 --------FNPTRLTYN--ALIQGLCKNQEGDLAEELLREMVSKGITPDDNT-YFSLIEGIASVDKAAESS 317 (319)
Q Consensus 258 --------~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~ 317 (319)
-+|+...|. .++..+-+.|+++.|...++....+ .|+..- |..=.+-+.+.|+.++|.
T Consensus 357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa 425 (700)
T KOG1156|consen 357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAA 425 (700)
T ss_pred CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHH
Confidence 245666564 4677888999999999999998875 676543 434456688888888875
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=6.7e-08 Score=80.17 Aligned_cols=223 Identities=14% Similarity=0.070 Sum_probs=178.8
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHH
Q 039029 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNL 85 (319)
Q Consensus 6 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
++|--..-..+...+...|-...|+.+|+++. .|..++.+|...|+..+|..+..+..+. +|+...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444444567788888999999999998765 4777888999999999999998888874 678888888
Q ss_pred HHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhcc
Q 039029 86 LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
+........-+++|.++.+..... .-..+.....+.+++.++.+.++.-.+.+ +....+|.....+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888776666678888887765432 22223333445789999999999887764 5567888888888899999
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHH
Q 039029 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (319)
+..+.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+......|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999988876432 57899999999999999999999999999887 55667888888889999999999999999
Q ss_pred HHHc
Q 039029 246 MKRR 249 (319)
Q Consensus 246 ~~~~ 249 (319)
+...
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 8764
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=2.8e-06 Score=70.06 Aligned_cols=275 Identities=12% Similarity=0.159 Sum_probs=169.9
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------------C------ChHHHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK----------------G------NLEMAFSFR 68 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~ 68 (319)
..|++|.+.|.+.|.+++|.++|++....- .++.-|..+...|+.. + +++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 458999999999999999999999987642 2333444444444331 1 122233344
Q ss_pred HHHHHcCC-----------CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCC------ChHHHHHHHHHHHhcCCh
Q 039029 69 DEMVKQGI-----------MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP------DSITYNILINGYCRCGNA 131 (319)
Q Consensus 69 ~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 131 (319)
+.+..... +-++..|..-.. ...|+..+....|.+..+. +.| -...|..+...|-..|+.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 44433310 112233332222 2345666777777777653 222 235678888999999999
Q ss_pred HHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCC----------c-------cHHHHHHH
Q 039029 132 KKAFSLHDEMIHKGIQPT---MLTYTSLIFVLSKQNRMIEADQLFENFLAKGML----------P-------DIVMFNAL 191 (319)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l 191 (319)
+.|..+|++..+...+-- ..+|......=.+..+++.|.++++.....-.. | +...|..+
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999887643211 234555555556777888888888776533111 1 33456666
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHH
Q 039029 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (319)
+..-...|-++....+++++.+..+. ++.........+..+.-++++.+++++-+..-..|..+ ..|+..+.-
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~------diW~tYLtk 556 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY------DIWNTYLTK 556 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH------HHHHHHHHH
Confidence 66666778888889999998877643 33333334444556666788888887765544344433 567666665
Q ss_pred HHhc---CchhHHHHHHHHHHhCCCCCChH
Q 039029 272 LCKN---QEGDLAEELLREMVSKGITPDDN 298 (319)
Q Consensus 272 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~ 298 (319)
+.+. ...+.|..+|++.++ |.+|...
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 5542 346788888888887 6666543
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=2.5e-06 Score=65.08 Aligned_cols=289 Identities=10% Similarity=0.050 Sum_probs=187.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCcChhh-HHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNT---LIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST-YNLLIH 88 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 88 (319)
.-.+...+...|++..|+.-|....+- |+..|.+ -...|...|+...|+.-+...++. +||-.. -..-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 344666777788888888888887763 3333433 344677778888888888877765 455322 112234
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCC--hH----------HH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPD--SI----------TY--NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~----------~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (319)
.+.+.|.++.|..=|+.+.+..+... .. .| ...+..+...|+...|+.....+.+.. +-+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 56788888888888888877643211 11 11 223455666788888888888888764 45677777
Q ss_pred HHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhh-H---HH---H-
Q 039029 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT-Y---NT---L- 226 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~---~~---l- 226 (319)
.-..+|...|.+..|+.-+....+.... +..++-.+-..+...|+.+.++...++..+. .||... | .. +
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 7788888888888888777776665332 5566666677777888888888887777765 344321 1 11 1
Q ss_pred -----HHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC-hHHH
Q 039029 227 -----MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD-DNTY 300 (319)
Q Consensus 227 -----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 300 (319)
+......++|.++.+-.+..++.......+ ....+..+-.++...|++.+|+....+.++. .|| ..++
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i----r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l 344 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI----RYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce----eeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHH
Confidence 122345667777777777776653221111 1133445556667778888888888887763 454 6677
Q ss_pred HHHHHHhhhcchhhhhc
Q 039029 301 FSLIEGIASVDKAAESS 317 (319)
Q Consensus 301 ~~l~~~~~~~g~~~~A~ 317 (319)
..-..+|.-...+++|+
T Consensus 345 ~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAI 361 (504)
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 77777777777777775
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.02 E-value=2.7e-07 Score=67.34 Aligned_cols=119 Identities=11% Similarity=0.087 Sum_probs=72.0
Q ss_pred hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCc--HHHH
Q 039029 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG-RCRQGK--VEEA 239 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a 239 (319)
.++.+++...++...+.... +...|..+...|...|++++|...+++..+.. +.+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44555555556655555332 56666666667777777777777777666654 2345555555554 345555 4677
Q ss_pred HHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.++++++.+.+ |+. ..++..+...+...|++++|...|+++++.
T Consensus 130 ~~~l~~al~~d--P~~------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD--ANE------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC--CCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777766643 322 245666666667777777777777776664
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=2.5e-07 Score=67.61 Aligned_cols=165 Identities=13% Similarity=0.011 Sum_probs=128.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 039029 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193 (319)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
|... ..+-..+...|+-+....+..+.... .+.+.......+....+.|++..|...+.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 66677888888888888887776544 24466677778888899999999999999988764 458899999999
Q ss_pred HHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHH
Q 039029 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273 (319)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (319)
+|.+.|+++.|..-|.+..+.. .-+....+.+.-.+.-.|+++.|..++......+.. +...-..+.....
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a--------d~~v~~NLAl~~~ 213 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA--------DSRVRQNLALVVG 213 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC--------chHHHHHHHHHHh
Confidence 9999999999999999988764 234566788888888899999999999988775422 2256677888888
Q ss_pred hcCchhHHHHHHHHHHh
Q 039029 274 KNQEGDLAEELLREMVS 290 (319)
Q Consensus 274 ~~g~~~~A~~~~~~~~~ 290 (319)
..|++++|..+...-..
T Consensus 214 ~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 214 LQGDFREAEDIAVQELL 230 (257)
T ss_pred hcCChHHHHhhcccccc
Confidence 99999999887665443
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=2.8e-07 Score=69.92 Aligned_cols=184 Identities=12% Similarity=0.029 Sum_probs=100.6
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh--hhHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLV-P-TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA--STYNLLI 87 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 87 (319)
.+-.+...+.+.|++++|...|+++...... | ...++..+..++...|++++|...++.+.+....... .++..+.
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 3444555566666666666666666553221 0 1134455556666666666666666666654321111 1233333
Q ss_pred HHHHHc--------CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 88 HELLME--------RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 88 ~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
.++... |+.++|.+.++.+.+..+. +...+..+..... .. ... ......+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~--------~~~~~~~a~~ 175 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL--------AGKELYVARF 175 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH--------HHHHHHHHHH
Confidence 344333 4555566666665544322 2112211111000 00 000 0011245566
Q ss_pred HhhhccHHHHHHHHHHHhhCCC--CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 160 LSKQNRMIEADQLFENFLAKGM--LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
+.+.|++.+|...++.+.+... +.....+..+..++...|++++|..+++.+...
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888999999999998887632 223577888899999999999999988887654
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.00 E-value=4.7e-07 Score=66.28 Aligned_cols=159 Identities=18% Similarity=0.066 Sum_probs=131.9
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
..+-..+...|+-+....+.......... +.......+....+.|++..|...+++..... ++|...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 56667777888888888888876654333 66677778999999999999999999998875 78899999999999999
Q ss_pred ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
|+.+.|..-|.+..+.... +....+.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999999887544 56778888888889999999999999987764 336777788888889999999998877
Q ss_pred HHH
Q 039029 244 DQM 246 (319)
Q Consensus 244 ~~~ 246 (319)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=1.6e-07 Score=78.05 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=180.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (319)
-..+...+...|-...|..+++++. .|...+.+|...|+..+|..+..+..++ +|++..|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3457778888899999999988654 5667788999999999999999988874 5789899888888777
Q ss_pred cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHH
Q 039029 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (319)
..-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+... ....+|-.+..+..+.++++.+.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788888888765433 222222333457899999999998777643 3578888899999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 208 LKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
|....... +-+...||.+-.+|.+.|+-.+|...+.++.+.+..+- ..|...+......|.++.|++.+.+
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w--------~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW--------QIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC--------eeeechhhhhhhcccHHHHHHHHHH
Confidence 99987753 33467999999999999999999999999998763322 5677778888999999999999999
Q ss_pred HHhCCC-CCChHHHHHHHHHhh
Q 039029 288 MVSKGI-TPDDNTYFSLIEGIA 308 (319)
Q Consensus 288 ~~~~~~-~~~~~~~~~l~~~~~ 308 (319)
+..... .-|......++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 876411 124455555555443
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.99 E-value=5.5e-07 Score=65.76 Aligned_cols=120 Identities=12% Similarity=0.120 Sum_probs=82.4
Q ss_pred cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH-hhhcc--HHHH
Q 039029 93 ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL-SKQNR--MIEA 169 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 169 (319)
.++.+++...+++..+..+. +...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666665544 67777777777777777777777777777764 44666666666653 55555 4777
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Q 039029 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
.+++++..+.+.. +...+..+...+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777776544 56667777777777777777777777776654
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.98 E-value=4.2e-07 Score=68.97 Aligned_cols=188 Identities=10% Similarity=-0.023 Sum_probs=122.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c-ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCCh--HHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM-P-TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS--ITY 118 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 118 (319)
.....+......+...|+++.|...++++...... | ....+..+..++...|++++|...++++.+..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777777888888888888888888776321 1 1235666777888888888888888888776433111 134
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHH
Q 039029 119 NILINGYCRC--------GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190 (319)
Q Consensus 119 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (319)
..+..++... |++++|.+.++.+.... +.+......+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 4555555544 66777888888777653 222222222211110 000 00 011124
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 191 LIDGHCTNGNIERAFSLLKEMDRMKV--HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
+...|.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678899999999999999877531 123567889999999999999999999988764
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.96 E-value=1.7e-06 Score=75.73 Aligned_cols=232 Identities=9% Similarity=0.040 Sum_probs=132.4
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+.+.-+ .++..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 445667777777777777777777766654322 222333333355555554443333 12222
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
.....++..+..+...+.+.+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-++.+.+.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222333333333334444321 244567777888888888888888888888876 55777888888888777 88888
Q ss_pred HHHHHHHhhCCC---Ccc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 170 DQLFENFLAKGM---LPD--IVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 170 ~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
.+++.++...-+ .++ ...|..++. ....+.+.-..+.+.+... +..--..++..+-..|...++|+++..++
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 887777665411 000 111111111 1122334444444444332 22223445566667778888899999999
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHH
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLC 273 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (319)
+.+++.. |+. ..+...++.+|.
T Consensus 247 K~iL~~~--~~n------~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHD--NKN------NKAREELIRFYK 268 (906)
T ss_pred HHHHhcC--Ccc------hhhHHHHHHHHH
Confidence 9998853 332 256677777776
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=8.2e-06 Score=74.65 Aligned_cols=299 Identities=13% Similarity=0.054 Sum_probs=183.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCC------CCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh----hh
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENGL------VPT--AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA----ST 82 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 82 (319)
.....+...|+++++..++......-. .+. ......+...+...|+++.|...+++........+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344555677899999888887654311 111 112223344566789999999999888763111111 23
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhC----CC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--c-cH
Q 039029 83 YNLLIHELLMERKMVEADDMLKEMGEK----GI-VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK----GIQ--P-TM 150 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 150 (319)
.+.+...+...|++++|...+++.... +. .....++..+...+...|++++|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 455566677889999999888887642 11 111234556677788899999999988876653 211 1 22
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHhhC----CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCC-ChhhH--
Q 039029 151 LTYTSLIFVLSKQNRMIEADQLFENFLAK----GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP-DEVTY-- 223 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-- 223 (319)
..+..+...+...|++++|...+.+.... +.......+..+...+...|+.+.|...+.......... ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 33445556677789999999888876543 111123444556667788899999999888875421111 11111
Q ss_pred ---HHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC----CCCCC
Q 039029 224 ---NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK----GITPD 296 (319)
Q Consensus 224 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~ 296 (319)
...+..+...|+.+.|..++............ .....+..+..++...|++++|...+++.... |..++
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~----~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH----FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11224445678888888887664431110000 01122456777888999999999999988763 33322
Q ss_pred -hHHHHHHHHHhhhcchhhhhc
Q 039029 297 -DNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 297 -~~~~~~l~~~~~~~g~~~~A~ 317 (319)
..+...+..++.+.|+.++|.
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHH
Confidence 245666677788999988875
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=3.5e-07 Score=68.21 Aligned_cols=233 Identities=12% Similarity=0.103 Sum_probs=161.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHH-HHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI-LING 124 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 124 (319)
.-+.+++..+.+..+++.|++++..-.+.. +.+......+..+|....++..|...++++.... |...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 346777777888899999999998888774 3377788899999999999999999999998763 44444433 3566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHHH--HHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLT--YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
+.+.+.+.+|+.+...|... ++... ...-.....+.+++..+..++++....+ +..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 77889999999999888653 22222 1111223456788888888888876443 3444555555557889999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcc------c--------Ccch------
Q 039029 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS------F--------NPTR------ 262 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--------~~~~------ 262 (319)
.|.+-|+...+.+---....|+.-+. ..+.|++..|+++..++++.|++..+.. - +|-.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999877543333455665554 4567899999999999998877543321 0 1111
Q ss_pred -hhHHHHHHHHHhcCchhHHHHHHHHH
Q 039029 263 -LTYNALIQGLCKNQEGDLAEELLREM 288 (319)
Q Consensus 263 -~~~~~l~~~~~~~g~~~~A~~~~~~~ 288 (319)
..+|.-...+.+.|+++.|.+.+-+|
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 12222233355778888888877766
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=6.7e-07 Score=61.78 Aligned_cols=108 Identities=12% Similarity=-0.071 Sum_probs=69.5
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCC
Q 039029 31 RMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKG 110 (319)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (319)
.++++..+.+ |+ .+......+...|++++|...|+...... +.+...+..+..++...|++++|...|++.....
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555432 22 24445666667777777777777776654 3356666667777777777777777777777654
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+. +...+..+..++...|++++|...|+.....
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 6666677777777777777777777776665
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.87 E-value=4.6e-06 Score=72.18 Aligned_cols=180 Identities=6% Similarity=0.040 Sum_probs=124.0
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHH
Q 039029 42 VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
..++..+..|.....+.|++++|..+++...+.. +-+......+...+.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3456777778888888888888888888888764 235566677777888888888888888888877654 67777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcH
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
..++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+...+.. .+....|+.++. +.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 888888888888888888888743 4457788888888888888888888888877652 234455554432 33
Q ss_pred HHHHHHHHHHHhC----CCCCChhhHHHHHHHHH
Q 039029 202 ERAFSLLKEMDRM----KVHPDEVTYNTLMHGRC 231 (319)
Q Consensus 202 ~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~ 231 (319)
..-..+++++.-. |.+........++..|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 3444455555322 22333445555555554
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=9.3e-06 Score=74.29 Aligned_cols=273 Identities=12% Similarity=0.049 Sum_probs=177.9
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcChhhHHHHH
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTA----VTYNTLIDGYCNKGNLEMAFSFRDEMVKQ----GI-MPTASTYNLLI 87 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 87 (319)
...+...|++++|...+++........+. ...+.+...+...|+++.|...+++.... +. ......+..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34556789999999999988763211121 24456667778899999999999888753 11 11123445666
Q ss_pred HHHHHcCchhHHHHHHHHHhhC----CCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCc--cHHHHHHH
Q 039029 88 HELLMERKMVEADDMLKEMGEK----GIV--P-DSITYNILINGYCRCGNAKKAFSLHDEMIHKG--IQP--TMLTYTSL 156 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l 156 (319)
..+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7788899999999988876542 211 1 22334556667788899999999998876531 112 23344556
Q ss_pred HHHHhhhccHHHHHHHHHHHhhCC--CCccHH--HH--HHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 039029 157 IFVLSKQNRMIEADQLFENFLAKG--MLPDIV--MF--NALIDGHCTNGNIERAFSLLKEMDRMKVHPD---EVTYNTLM 227 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 227 (319)
...+...|+.+.|...+....... ...... .. ...+..+...|+.+.+...+........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 667788999999999988875421 111111 11 1122445568899999999877654221111 11134567
Q ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.++...|++++|...+.++.......... .....+...+..++.+.|+.++|...+.+..+.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~--~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLM--SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78889999999999999887642111100 011245667778899999999999999999875
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=4.9e-06 Score=72.00 Aligned_cols=145 Identities=11% Similarity=-0.003 Sum_probs=110.7
Q ss_pred CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 039029 77 MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
+.+...+..|.....+.|..++|..+++...+..+. +......+...+.+.+++++|+..+++..... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 456778888888888888888888888888877544 56677778888888888888888888888774 4466777777
Q ss_pred HHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHH
Q 039029 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT 225 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (319)
..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|++..+.. .+....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 7888888888888888888887432 247778888888888888888888888876653 333444433
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=4.6e-06 Score=73.18 Aligned_cols=225 Identities=13% Similarity=0.114 Sum_probs=158.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT-ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
.+...+..|+..+...+++++|.++.+...+.. |+ ...|..+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 356788999999999999999999999877763 33 33444444456666664444333 34
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcH
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
+.......++.-+..++..+... .-+...+..+..+|.+.|+.+++..+|+++++..+. ++.+.|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 45555555665555555666654 335668899999999999999999999999998744 789999999999999 99
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcc--------------cCcchhhHHH
Q 039029 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS--------------FNPTRLTYNA 267 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 267 (319)
++|.+++.+.... +...+++..+.++|.++.... |+... +.--..++..
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 9999999988654 333445555555555554432 12111 1122245666
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhh
Q 039029 268 LIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308 (319)
Q Consensus 268 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (319)
+-..|...++|+++..+++.+++.. +-|......++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 6678888999999999999999863 336666777777664
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=1e-06 Score=60.91 Aligned_cols=92 Identities=8% Similarity=-0.146 Sum_probs=45.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCC
Q 039029 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199 (319)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
.+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+....... .+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 34444455555555555555554442 33444555555555555555555555555554432 13444444555555555
Q ss_pred cHHHHHHHHHHHHh
Q 039029 200 NIERAFSLLKEMDR 213 (319)
Q Consensus 200 ~~~~a~~~~~~~~~ 213 (319)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555444
No 109
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=1.7e-05 Score=66.78 Aligned_cols=254 Identities=14% Similarity=0.040 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHH
Q 039029 27 EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106 (319)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (319)
.++++.+++..+.+.. |+.+...+.--|+..++.+.|.+...+..+.+...+...|..+..++...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4667777777766543 333333334446677888888888888888755667888888888888888888888887766
Q ss_pred hhCCCC-------------------CChHHHHHHHHHHHhc-----------------------CChHHHHHHHHHHH--
Q 039029 107 GEKGIV-------------------PDSITYNILINGYCRC-----------------------GNAKKAFSLHDEMI-- 142 (319)
Q Consensus 107 ~~~~~~-------------------~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~-- 142 (319)
...-.. --..|...++..+-.. ++..++.+....+.
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 543111 0112222222222200 01111111111110
Q ss_pred ------HcC---------C--Ccc------HHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCC
Q 039029 143 ------HKG---------I--QPT------MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199 (319)
Q Consensus 143 ------~~~---------~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
..+ + .|+ ...|......+.+.+..+++...+.+..... +.....|......+...|
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHH
Confidence 001 0 111 1234445566777788888887777766653 335677777778888899
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH--HHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCc
Q 039029 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR--LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 277 (319)
.+++|.+.|......+ +.++.+..++...+.+.|+..-|.. ++..+.+.+ |+ +...|..+...+.+.|+
T Consensus 699 ~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~------n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PL------NHEAWYYLGEVFKKLGD 769 (799)
T ss_pred hhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CC------CHHHHHHHHHHHHHccc
Confidence 9999999999988764 3346688899999999998888877 999998854 33 33899999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 039029 278 GDLAEELLREMVSK 291 (319)
Q Consensus 278 ~~~A~~~~~~~~~~ 291 (319)
.+.|.+.|+...+.
T Consensus 770 ~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 770 SKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999998775
No 110
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.9e-05 Score=63.83 Aligned_cols=294 Identities=17% Similarity=0.123 Sum_probs=193.2
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-hhhHHHHHHHHHHcCc
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT-ASTYNLLIHELLMERK 95 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 95 (319)
..+.+..|+++.|+..|.+....... +...|..-..+|...|++++|++--.+.++. .|+ ...|.....+..-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 35667889999999999998876544 7778888889999999999998877776665 444 4578888888888999
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC----------------------------------------------
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCG---------------------------------------------- 129 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------------------- 129 (319)
+++|+.-|.+-.+.... +...++.+..++.-..
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999887776433 5555555554441110
Q ss_pred --ChHHHHHHHHHHHHc--------C-------CCc---------c-------------HHHHHHHHHHHhhhccHHHHH
Q 039029 130 --NAKKAFSLHDEMIHK--------G-------IQP---------T-------------MLTYTSLIFVLSKQNRMIEAD 170 (319)
Q Consensus 130 --~~~~a~~~~~~~~~~--------~-------~~~---------~-------------~~~~~~l~~~~~~~~~~~~a~ 170 (319)
+.....+..-.+... + ..| . ..-...+..+..+..++..+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 000000000000000 0 001 0 011234445555666777777
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHH-------HHHHHHHcCCcHHHHHHHH
Q 039029 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN-------TLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~ 243 (319)
+.+....... -+..-++....+|...|.+..+........+.|-. ....|+ .+..+|.+.++++.+...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 7777777664 35556667777888888888887777776655421 122222 2344666778899999999
Q ss_pred HHHHHcCCCCCCcc-----------------cCcchh-hHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 039029 244 DQMKRRGIKPDHIS-----------------FNPTRL-TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305 (319)
Q Consensus 244 ~~~~~~~~~~~~~~-----------------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 305 (319)
.+.+.....|+..+ +.|... -...-...+.+.|++..|+..|.+++... +-|...|..-.-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 99877665555433 222221 11222556788999999999999999975 457788888999
Q ss_pred HhhhcchhhhhcC
Q 039029 306 GIASVDKAAESSN 318 (319)
Q Consensus 306 ~~~~~g~~~~A~~ 318 (319)
+|.+.|.+.+|..
T Consensus 401 c~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 401 CYLKLGEYPEALK 413 (539)
T ss_pred HHHHHhhHHHHHH
Confidence 9999999988753
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=8.9e-09 Score=51.09 Aligned_cols=32 Identities=56% Similarity=1.099 Sum_probs=17.3
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039029 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141 (319)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (319)
|+.||..+|++|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3.6e-05 Score=63.06 Aligned_cols=124 Identities=13% Similarity=0.035 Sum_probs=88.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (319)
+=++.+.+.|++++|.+...++...+ +-+...+..-+-+..+.+++++|+.+.+.-... ..+...+.--+.+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34667788899999999999999876 446667777777888999999999665543221 111111123345667889
Q ss_pred chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 95 KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
..++|...++-.... +..+...-...+.+.|++++|+.+|+.+.+.+
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 999999988833221 34466666788899999999999999986654
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2e-05 Score=58.08 Aligned_cols=264 Identities=14% Similarity=0.135 Sum_probs=165.8
Q ss_pred CCCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChh
Q 039029 2 KSRGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS 81 (319)
Q Consensus 2 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (319)
-..+.-|+...|+ ++.+.-.|++..++..-....... -+...-.-+.++|...|.+.....- +.... .|...
T Consensus 2 ~~~~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lq 73 (299)
T KOG3081|consen 2 SSMEAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQ 73 (299)
T ss_pred CccccCcchhHHH--HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccccc-CChHH
Confidence 3344445544454 344445688888877666554432 3444444566677777765543322 22222 23333
Q ss_pred hHHHHHHHHHHcCchhH-HHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 82 TYNLLIHELLMERKMVE-ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
.+..+......-+..++ ..++.+.+.......+......-...|...|++++|++...... +......=+..+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~ 147 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQIL 147 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHH
Confidence 33333333333333333 33445555555444344444455678899999999999887622 333444445566
Q ss_pred hhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc----CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH
Q 039029 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT----NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (319)
.+..+.+.|.+.+++|... .+..+.+.|..++.+ .+....|.-+|+++.+. .+|+..+.+-...++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 7888999999999999886 256777777766654 45688999999999774 478888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhH-HHHHHHHHHhC
Q 039029 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL-AEELLREMVSK 291 (319)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 291 (319)
++|..+++.++..... ++.+...++-+-...|...+ ..+.+.++...
T Consensus 224 eeAe~lL~eaL~kd~~--------dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK--------DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhccCC--------CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999886432 22566666666566666544 44556666553
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=8.8e-06 Score=59.46 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=137.4
Q ss_pred ccCChHHHHHHHHHHHhC---C-CCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 22 KEGRLEEASRMLEQMKEN---G-LVPTAV-TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 456788888888887643 3 344443 45667777788899999999999887763 22222322223335567899
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHH
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
++|.++++.+.+.++. |..++..=+...-..|..-+|++-+....+. +..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999887643 7777777677777788888888888888777 5778899999999999999999999999988
Q ss_pred hhCCCCccHHHHHHHHHHHhcCC---cHHHHHHHHHHHHhCC
Q 039029 177 LAKGMLPDIVMFNALIDGHCTNG---NIERAFSLLKEMDRMK 215 (319)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 215 (319)
.-..+. ++..+..+...+...| +.+-+.+.|.+..+..
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 876432 5555666666554433 5667888888887754
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=3.8e-05 Score=58.90 Aligned_cols=270 Identities=13% Similarity=0.038 Sum_probs=185.7
Q ss_pred CCcccHHHHH---HHHhccCChHHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--Chh
Q 039029 8 PDSYTYGSFV---SGMCKEGRLEEASRMLEQMKENGLVPTAVT-YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP--TAS 81 (319)
Q Consensus 8 p~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 81 (319)
.|+..|.++. ..|...|+...|+.-+....+. +||-.. -..-...+.+.|.++.|..-|+.+++....- +..
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 3444444443 4677788888888888887774 455422 2223446778999999999999998874211 111
Q ss_pred hH------------HHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc
Q 039029 82 TY------------NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT 149 (319)
Q Consensus 82 ~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (319)
.+ ...+..+...|+...|+.....+.+..+- +...+..-..+|...|++..|+.=++...+.. ..+
T Consensus 145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~Dn 222 (504)
T KOG0624|consen 145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDN 222 (504)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccc
Confidence 11 12234456678899999999999887543 88888888899999999999988887776664 346
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHH----HHHH---------HHHHhcCCcHHHHHHHHHHHHhCCC
Q 039029 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM----FNAL---------IDGHCTNGNIERAFSLLKEMDRMKV 216 (319)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (319)
..++..+-..+...|+.+.++...++.++. .||... |-.+ +......++|.++.+-.+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 677777778888899999988888888775 344321 1111 1223455677777777777666542
Q ss_pred CCCh---hhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 217 HPDE---VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 217 ~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.... ..+..+-.++...|++.+|++...++++ +.|+. ..++.--..+|.-...++.|+.-|+...+.
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~d------v~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDD------VQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 2122 2344556667778889999999998887 34442 467777788888888899999988888775
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.4e-06 Score=71.63 Aligned_cols=230 Identities=13% Similarity=0.114 Sum_probs=141.0
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCcChhhHHHHHHH
Q 039029 19 GMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG---------IMPTASTYNLLIHE 89 (319)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~ 89 (319)
.|...|+.+.|.+-.+-++ +..+|..+.+.|.+.++.+-|.-.+-.|.... -.++ .+-......
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4566788888877776655 44589999999999999888877776664321 1121 222333344
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
....|..++|..+|++..+. ..|=..|...|.|++|+++-+.--.-.+ ..||.....-+...++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 56778899999999887653 3455667788888888887654322211 24555555666667777777
Q ss_pred HHHHHHHhhC----------CC---------CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 170 DQLFENFLAK----------GM---------LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 170 ~~~~~~~~~~----------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
++.|++.... .+ ..|...|.-........|+.+.|+.+|....+ |-.+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 7777653221 00 11333444444445556777777777665543 33444555
Q ss_pred HcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
+-+|+.++|.++.++--. ..+.-.+.+.|-..|++.+|..+|.+..
T Consensus 949 C~qGk~~kAa~iA~esgd-------------~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESGD-------------KAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHhccc-------------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556666666655544221 1344566777777777777777766654
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=9.1e-06 Score=59.83 Aligned_cols=220 Identities=18% Similarity=0.083 Sum_probs=133.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF-SFRDEMVKQGIMPTASTYNLLIHELLME 93 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
-+.++|...|++...+. +++... .|....+..+......-++.+.-+ ++.+.+.......+......-...|...
T Consensus 46 y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~ 121 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHD 121 (299)
T ss_pred HHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcC
Confidence 35566777776654433 222222 233334444444444444444433 4445554443333333344445567788
Q ss_pred CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhh----hccHHHH
Q 039029 94 RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK----QNRMIEA 169 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 169 (319)
+++++|.+...... +......=...+.+..+.+-|.+.+++|.+.. +..+.+.|..++.+ .+.+.+|
T Consensus 122 ~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 122 GDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred CChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhH
Confidence 88888888777622 33333333455667777888888888887753 55666666666543 4567788
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH-HHHHHHHHHHHH
Q 039029 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV-EEARRLLDQMKR 248 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 248 (319)
.-+|+++.+. .+|+..+.+-...++...|++++|..+++...... ..++.+...++..-...|.. +...+.+.++..
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888887764 45678888888888888888888888888887764 33556666666555555554 445566666665
Q ss_pred c
Q 039029 249 R 249 (319)
Q Consensus 249 ~ 249 (319)
.
T Consensus 271 ~ 271 (299)
T KOG3081|consen 271 S 271 (299)
T ss_pred c
Confidence 3
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=3.3e-06 Score=57.96 Aligned_cols=97 Identities=13% Similarity=-0.003 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
.....+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+. .+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 334444555555556666666655555543 33445555555555555666666665555554432 2344455555555
Q ss_pred hcCCcHHHHHHHHHHHHhC
Q 039029 196 CTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~ 214 (319)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5556666666666555543
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=3.8e-05 Score=61.54 Aligned_cols=149 Identities=15% Similarity=0.060 Sum_probs=101.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
-.+...|++++|+..++.+... .|.|+.........+.+.++..+|.+.++++....+. .....-.+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChH
Confidence 3445667788888888887765 3556666677777778888888888888887776322 2555666777788888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHH
Q 039029 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 282 (319)
+|..+++...... +.|+..|..|.++|...|+..++..-..+ .+...|+++.|.
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------------~~~~~G~~~~A~ 445 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------------GYALAGRLEQAI 445 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------------HHHhCCCHHHHH
Confidence 8888887776653 55677788888888888877766544333 344567777777
Q ss_pred HHHHHHHhCCCCCChHHH
Q 039029 283 ELLREMVSKGITPDDNTY 300 (319)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~ 300 (319)
..+....+. +.++..+|
T Consensus 446 ~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 446 IFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHHHh-ccCCcHHH
Confidence 777777665 33444443
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=3.5e-06 Score=57.81 Aligned_cols=97 Identities=14% Similarity=0.027 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
.....+...+...|++++|...++.+...+ +.+...+..+..++...|++++|..++++..+.++. +...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 344455555666666666666666665543 234555556666666666666666666666554322 455555566666
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 039029 126 CRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (319)
...|++++|...++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.66 E-value=1.6e-06 Score=69.38 Aligned_cols=126 Identities=19% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
.....++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+..... +-+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344455566666777777777777777663 33 33446666666677777777777766542 33455555556667
Q ss_pred HcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
.+.++++.|..+.+++.+ ..|+.+ .+|..|..+|...|+++.|+-.++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~--lsP~~f------~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE--LSPSEF------ETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHH--hCchhH------HHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777776 345544 677777777777788777777776553
No 122
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=8.2e-05 Score=57.39 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=60.8
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.-+..+.++..|+.+++--...+-.-...+-.-+..++.+.|++++|...+..+.+.. .++...+..+.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566678888888888766543322222333346667788899999999998887754 55666666677777777888
Q ss_pred hHHHHHHHHH
Q 039029 97 VEADDMLKEM 106 (319)
Q Consensus 97 ~~a~~~~~~~ 106 (319)
.+|..+-...
T Consensus 108 ~eA~~~~~ka 117 (557)
T KOG3785|consen 108 IEAKSIAEKA 117 (557)
T ss_pred HHHHHHHhhC
Confidence 8887765554
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=6.3e-05 Score=55.17 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=131.2
Q ss_pred cCChHHHHHHHHHHHHc---C-CCcChh-hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChH
Q 039029 58 KGNLEMAFSFRDEMVKQ---G-IMPTAS-TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (319)
..+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34556666666665542 2 334433 34555666777888999999999887763 223333333334455678899
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 039029 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212 (319)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
+|.++|+.+.+.+ |.|..++-.-+.+.-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998876 556667766666666777777888888877776 44588999999999999999999999999987
Q ss_pred hCCCCCChhhHHHHHHHHHcCC---cHHHHHHHHHHHHHcC
Q 039029 213 RMKVHPDEVTYNTLMHGRCRQG---KVEEARRLLDQMKRRG 250 (319)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 250 (319)
-.. |.++..+..+...+.-.| +.+.+.++|.+.++..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 653 445556666776655444 4667888888877743
No 124
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.1e-05 Score=61.46 Aligned_cols=238 Identities=16% Similarity=0.084 Sum_probs=151.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHH------
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL------ 121 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 121 (319)
...+.+...+..+++.+++.+....+.. -+..-++....++...|........-....+.|.. ....|+.+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456666777778888888888777764 35555666667777777777766666665555433 22333333
Q ss_pred -HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCc
Q 039029 122 -INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200 (319)
Q Consensus 122 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (319)
..+|.+.++++.++..|.+.......|+ ...+....+++.+..+...-.+... ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3355556677788888777655432222 2223334444444444333322221 1112222556677888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhH
Q 039029 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDL 280 (319)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 280 (319)
+..|...|.+++... +-|...|..-.-+|.+.|.+..|++-.+..++. .|+. ...|..=..++....+|++
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~------~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNF------IKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchH------HHHHHHHHHHHHHHHHHHH
Confidence 888888888888775 557778888888888888888888887777775 3332 2566666667777788888
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHhhh
Q 039029 281 AEELLREMVSKGITPDDNTYFSLIEGIAS 309 (319)
Q Consensus 281 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (319)
|.+.|++.++. .|+...+...+.-|..
T Consensus 445 Aleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 445 ALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888875 4766666655555544
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=7.9e-05 Score=59.83 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=118.8
Q ss_pred HHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhcc
Q 039029 86 LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
....+...|+.++|+..++.+....+. |+..+......+...++.++|.+.++++.... +........+..++.+.|+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCC
Confidence 334456789999999999999887543 77778888899999999999999999999873 3336777788899999999
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHH
Q 039029 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (319)
+.+|+.+++....... -|+..|..|..+|...|+..++..-.. ..|...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHH
Confidence 9999999999887754 488999999999999999887765443 445678999999999988
Q ss_pred HHHc
Q 039029 246 MKRR 249 (319)
Q Consensus 246 ~~~~ 249 (319)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 8775
No 126
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=4e-05 Score=59.03 Aligned_cols=216 Identities=13% Similarity=0.135 Sum_probs=138.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-------chhHHHHHHHHHhhCCCCCChH-HHHH
Q 039029 49 NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER-------KMVEADDMLKEMGEKGIVPDSI-TYNI 120 (319)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~ 120 (319)
-.++-.|.++++..+|..+.+++. +.++.-|..-.......| ...-|.+.|+-..+.+...|.. --..
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 345556778899999988877654 223333333333333333 3455666666666655444432 2345
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHH-HHHHHHHhcCC
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF-NALIDGHCTNG 199 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 199 (319)
+.+.+.-..++++++..++.+...- ..|...-..+..++...|++.+|+++|-.+....+. +..+| ..|.++|.+.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 5666667778899999988887763 334444445678888999999999999887766555 44444 55678899999
Q ss_pred cHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhc
Q 039029 200 NIERAFSLLKEMDRMKVHPDEV-TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (319)
.++.|++++-++.. +.+.. ....+..-|.+.+.+--|.+.|+.+...+..|... .--..+...+.+.++..
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW--eGKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW--EGKRGACAGLFRQLANH 514 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc--CCccchHHHHHHHHHcC
Confidence 99999888766543 22333 33445577888899988999999888765544432 22223444455544433
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.61 E-value=3.1e-06 Score=67.83 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (319)
....++..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|.+++.+..+..+. +......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34455666666777888888888877663 33 3445667777777777788887777765333 5666666677777
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q 039029 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
+.++++.|+.+.+++.... |.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888887763 44456788888888888888888877776653
No 128
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.0002 Score=58.98 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC--CCCCCc
Q 039029 187 MFNALIDGHCTNGNIERAFSLLK--------EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG--IKPDHI 256 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~ 256 (319)
+....+......|+++.|.+++. .+.+.+..| .+...+...+.+.++-+.|..++...+..- -.+..
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s- 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS- 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-
Confidence 33444555566777777777777 444433333 344555566666666555666665554320 00111
Q ss_pred ccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcc
Q 039029 257 SFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311 (319)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 311 (319)
..-..++..++..-.+.|.-++|..+++++.+. .++|..+...++.+|++.+
T Consensus 455 --~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 455 --IALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred --hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 001123444444556779999999999999986 3678999999999998764
No 129
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.59 E-value=0.00023 Score=59.24 Aligned_cols=293 Identities=10% Similarity=0.103 Sum_probs=178.9
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKEN-GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
.|-..++.+.++|++......|+..... .+.....+|...+......+-++.+..+|++.++- ++..-...+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4455566677788888888888876654 22234457888888888888888899999888865 334466777888
Q ss_pred HHcCchhHHHHHHHHHhhC------CCCCChHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCcc--HHHHHHHHHH
Q 039029 91 LMERKMVEADDMLKEMGEK------GIVPDSITYNILINGYCRCGNAKK---AFSLHDEMIHKGIQPT--MLTYTSLIFV 159 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~l~~~ 159 (319)
.+.+++++|.+.+...... ..+.+...|..+-....+.-+.-. +..+++.+... -+| ...|..|..-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 8889999998888877543 123355666666665555443332 33344444333 233 3578888888
Q ss_pred HhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC----------------C------cHHHHHHHHHHHHhCC--
Q 039029 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN----------------G------NIERAFSLLKEMDRMK-- 215 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~-- 215 (319)
|.+.|.++.|..+|++.+..-. +..-|+.+.+.|+.- + +++-...-|+.+.+..
T Consensus 258 YIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 8999999999999888776522 233333444443321 1 1222223333332221
Q ss_pred ---------CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHH
Q 039029 216 ---------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286 (319)
Q Consensus 216 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 286 (319)
-+.+...|..-+ -+..|+..+-...+.+++.. +.|... .......|..+...|-..|+.+.|..+|+
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka-~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKA-VGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccC-CCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 012233333322 23457788888888888765 344332 11223578899999999999999999999
Q ss_pred HHHhCCCCCC---hHHHHHHHHHhhhcchhhhh
Q 039029 287 EMVSKGITPD---DNTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 287 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 316 (319)
+......+-- ..+|......=.+..+++.|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9887543221 23444444444445555544
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.55 E-value=1.5e-05 Score=55.36 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccH--HHHHHHH
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPT---MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI--VMFNALI 192 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 192 (319)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444444 3566666666666666652 222 122333445566677777777777777665432221 2333456
Q ss_pred HHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
..+...|++++|...++..... ......+......+...|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666777777777777554332 233445556667777777777777777653
No 131
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00033 Score=61.50 Aligned_cols=163 Identities=14% Similarity=0.081 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 039029 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193 (319)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
.+..|..+..+-.+.|...+|.+-|-+. .|+..|..++....+.|.+++..+++...++....|.. =+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3455666666666666666666554322 24556777777777777777777777666655444433 345666
Q ss_pred HHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHH
Q 039029 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273 (319)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (319)
+|++.++..+.+++.. -|+......+..-|...|.++.|.-+|... .-|..+...+.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------------SN~a~La~TLV 1231 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------------SNFAKLASTLV 1231 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------------hhHHHHHHHHH
Confidence 6777766665544431 355555566666666666666665555543 34666666666
Q ss_pred hcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchh
Q 039029 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313 (319)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 313 (319)
..|++..|.+.-++. .+..||-.+--+|...+.+
T Consensus 1232 ~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhh
Confidence 677776666544432 2344555555555544443
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=1e-05 Score=56.16 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC--hhhHHHH
Q 039029 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD--IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD--EVTYNTL 226 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 226 (319)
..|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+......|+ ......+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4455555555 47888888888998888743321 23344466788899999999999999988653332 2244557
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHH
Q 039029 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288 (319)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 288 (319)
...+...|++++|+..++...... .....+......+.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~---------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA---------FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc---------hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999996632211 12256778889999999999999999864
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=8.4e-05 Score=65.00 Aligned_cols=116 Identities=19% Similarity=0.195 Sum_probs=77.6
Q ss_pred ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 039029 79 TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
.+..|..+..+-.+.|.+.+|.+-|-+. -|+..|..++....+.|.|++..+.+....++...| ..-+.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHH
Confidence 4456777777777777777777665443 266778888888888888888888887776664443 34456777
Q ss_pred HHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHH
Q 039029 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLK 209 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (319)
+|++.+++.+.++++. .|+......+..-|...+.++.|.-+|.
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 8888887776655442 2455555555666666666665555544
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.00037 Score=56.87 Aligned_cols=133 Identities=11% Similarity=0.149 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
+|...+....+..-+..|..+|.++.+.+..+ ++.+.++++..|| .++.+-|.++|+-=.+. ..-+..--...+..+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 44455555556666777788888877776665 5666677777665 45667777777763332 112233335566666
Q ss_pred HcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
...++-..+..+|++....++.++. ....|..++.-=..-|+...+.++-+++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~k-----s~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADK-----SKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhh-----hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7777778888888888777655554 2367888887777788888888777776553
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.49 E-value=3.1e-07 Score=46.30 Aligned_cols=34 Identities=53% Similarity=0.872 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCh
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 297 (319)
+|+.++.+|.+.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.48 E-value=3.4e-07 Score=46.13 Aligned_cols=33 Identities=42% Similarity=0.927 Sum_probs=23.1
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT 44 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 44 (319)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777666665
No 137
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.47 E-value=6.9e-06 Score=66.26 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=103.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHH
Q 039029 40 GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ--GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT 117 (319)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (319)
+.+.+......+++.+....+.+.+..++-+.+.. ....-..+..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556667778888888888889999998888776 2223345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
++.||..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777777777766666654
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.46 E-value=3.8e-07 Score=45.61 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=22.6
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP 43 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (319)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777666655
No 139
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.46 E-value=1.8e-05 Score=63.94 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=50.8
Q ss_pred CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHH
Q 039029 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK--GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224 (319)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (319)
+.+......++..+....+++.+..++.++... ....-..|..++++.|...|..+.+..++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444555555555555555555544433 111112233355555555555555555555555555555555555
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 225 TLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
.|+..+.+.|++..|.++...|...+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 55555555555555555555544443
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.45 E-value=4.2e-07 Score=45.43 Aligned_cols=33 Identities=39% Similarity=0.619 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 295 (319)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.001 Score=57.66 Aligned_cols=226 Identities=14% Similarity=0.125 Sum_probs=154.1
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 19 GMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLID--GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
-....+++..|+....++.+.- |+.. |..++. ...+.|+.++|..+++.....+.. |..+...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 3456788999999999887753 4432 333333 346789999999888887766544 788889999999999999
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc----------cH
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN----------RM 166 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~ 166 (319)
++|..+|++.... .|+......+..+|.+.+++.+-.+.--++.+. ++.+.+.|-.+++.+.+.- -.
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999876 456777888888999988887655444444433 4556666666666654321 12
Q ss_pred HHHHHHHHHHhhCC-CCccHHHHHHHHHHHhcCCcHHHHHHHHHH-HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHH
Q 039029 167 IEADQLFENFLAKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKE-MDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244 (319)
Q Consensus 167 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (319)
.-|.+.++.+.+.+ ..-+..-...........|.+++|.+++.. ..+.-..-+...-+.-+..+...++|.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34666667666654 222222233334445677889999999843 3333223334444566677788889999888888
Q ss_pred HHHHcCC
Q 039029 245 QMKRRGI 251 (319)
Q Consensus 245 ~~~~~~~ 251 (319)
++...+.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 8888763
No 142
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.39 E-value=0.00013 Score=61.86 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=128.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHH------
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI------ 120 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------ 120 (319)
.-.+.++++...|+-++|-++-. . +..+ ...|..|.+.|.+.+|.+....-.. ...|......
T Consensus 591 lk~sy~q~l~dt~qd~ka~elk~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali 659 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAELKE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI 659 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhhcc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH
Confidence 34566777777888777754421 1 1112 2345677777777776654321111 1113333333
Q ss_pred -------HHHHHHhcCChHHHHHHHHHHHHc---------CCCccHHHH-HHHHHHHhhhccHHHHHHHHHHHhhCCCCc
Q 039029 121 -------LINGYCRCGNAKKAFSLHDEMIHK---------GIQPTMLTY-TSLIFVLSKQNRMIEADQLFENFLAKGMLP 183 (319)
Q Consensus 121 -------l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (319)
....|-+..++++|++.|++--.. .+|....+. ......+...|+++.|...|-+...
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~----- 734 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC----- 734 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----
Confidence 333344444555555555431110 111111111 1122333445555555555433221
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchh
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 263 (319)
.-..+.+......|.+|..+++.+.+.+ ....-|..+...|...|+++.|.++|.+. .
T Consensus 735 ----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------------~ 792 (1636)
T KOG3616|consen 735 ----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------------D 792 (1636)
T ss_pred ----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------------c
Confidence 2233455566778888888888887754 23445677788888888888888888663 2
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
.++-.+..|.+.|+|+.|.++-.+.. |-......|..-.+-+.+.|++.||+.
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 45667778888888888888765543 323344455555556777888877753
No 143
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.36 E-value=7.6e-05 Score=63.17 Aligned_cols=109 Identities=23% Similarity=0.231 Sum_probs=71.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcH
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
+.+.....+|.+|+.+++.+..+.. ....|..+...|+..|+++.|.++|.+. ..++-.+.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4455666788888888887776532 3445677778888888888888888642 2355567788888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
+.|.++-.+... .......|..-..-+-.+|++.+|.+++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 888887666542 2233444444444455566666655544
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0014 Score=56.89 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=148.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH--HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHH
Q 039029 56 CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH--ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (319)
...+++.+|+.....+.+.. |+.. |...+. ...+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45678999999999988773 3432 333333 356889999999999988877665 88999999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCC-c---------HHH
Q 039029 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG-N---------IER 203 (319)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 203 (319)
|..+|+...+. .|+......+..+|.+.+.+.+-.+.--++-+. .+-....+-++++.+...- . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999887 567888888888999888776544443333332 2223444444444443321 1 233
Q ss_pred HHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHH
Q 039029 204 AFSLLKEMDRMK-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282 (319)
Q Consensus 204 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 282 (319)
|...++.+.+.+ .--+..-.......+...|++++|+.++..=......+.. ...-+.-+..+...+++.+..
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~------~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN------LYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc------hHHHHHHHHHHHHhcChHHHH
Confidence 555566655543 1112222233345556789999999999543333222221 133345667778889999999
Q ss_pred HHHHHHHhCC
Q 039029 283 ELLREMVSKG 292 (319)
Q Consensus 283 ~~~~~~~~~~ 292 (319)
++..++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9988888875
No 145
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=0.00018 Score=61.72 Aligned_cols=211 Identities=16% Similarity=0.113 Sum_probs=139.1
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhC-C--------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-G--------LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT 79 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (319)
+...|..+.+.|.+..+++-|.-.+-.|... | -.++ ..-..+.-.....|..++|..+|.+..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 3467899999999999988887766665431 1 1121 22222333456789999999999988764
Q ss_pred hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH----------HcC----
Q 039029 80 ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI----------HKG---- 145 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~---- 145 (319)
..|=..|-..|.+++|.++-+.-.+.... .||.....-+-..++.+.|++.|++.- ...
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 23334566789999999887654433322 345555556666777888887776531 110
Q ss_pred -----CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh
Q 039029 146 -----IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220 (319)
Q Consensus 146 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (319)
-..|...|......+...|+++.|+.+|....+ |-.+++..|-.|+.++|-.+-++- -|.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccH
Confidence 123445566666666778888888888876543 445666677788888887776543 244
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 039029 221 VTYNTLMHGRCRQGKVEEARRLLDQMK 247 (319)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (319)
...-.+.+.|...|++.+|..+|.++.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555667788888888888888877653
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.33 E-value=1.7e-05 Score=50.36 Aligned_cols=77 Identities=16% Similarity=0.380 Sum_probs=42.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CcChhhHHHHHHHHHHcC--------chhHHHHHHHHHhhCCCCCChHHHHHH
Q 039029 51 LIDGYCNKGNLEMAFSFRDEMVKQGI-MPTASTYNLLIHELLMER--------KMVEADDMLKEMGEKGIVPDSITYNIL 121 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555555555555555 455555555555544322 233455566666666666666666666
Q ss_pred HHHHHh
Q 039029 122 INGYCR 127 (319)
Q Consensus 122 ~~~~~~ 127 (319)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.32 E-value=5e-05 Score=50.67 Aligned_cols=97 Identities=14% Similarity=0.014 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cChhhHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM--PTASTYNLLIH 88 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 88 (319)
+-.++..+.+.|++++|.+.|..+...... .....+..+..++...|+++.|...++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555443211 01223344445555555555555555555443211 11233444444
Q ss_pred HHHHcCchhHHHHHHHHHhhC
Q 039029 89 ELLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~ 109 (319)
++...|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444555555555555555444
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.30 E-value=7.8e-05 Score=49.71 Aligned_cols=98 Identities=13% Similarity=0.012 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC--CChHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNILI 122 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 122 (319)
++......+.+.|++++|.+.+..+...... .....+..+..++...|+++.|...++.+....+. .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666667777777777666654211 11234455666666666666666666666554222 1234455556
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666665
No 149
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.29 E-value=0.00066 Score=59.54 Aligned_cols=164 Identities=11% Similarity=0.028 Sum_probs=110.8
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcChhhHHHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI-MPTASTYNLLIHE 89 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 89 (319)
..|..|...|+...+...|.+.|+...+.+.. +...+......|++..+++.|..+.-..-+... ..-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34677777777777788888888887775432 566777788888888888888877333222210 0011222234445
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhhhccHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM-LTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 168 (319)
+...++...+...|+...+..+. |...|..++.+|...|.+..|.++|.+.... .|+. ..--.....-+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 66777888888888888877655 8889999999999999999999999888775 3332 222222233456788888
Q ss_pred HHHHHHHHhh
Q 039029 169 ADQLFENFLA 178 (319)
Q Consensus 169 a~~~~~~~~~ 178 (319)
+...+.....
T Consensus 649 ald~l~~ii~ 658 (1238)
T KOG1127|consen 649 ALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.28 E-value=2.5e-05 Score=49.62 Aligned_cols=74 Identities=12% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCC-CCChHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 039029 88 HELLMERKMVEADDMLKEMGEKGI-VPDSITYNILINGYCRCG--------NAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. ..-..+.+|+.|...+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333344555555555555555555 455555555555444332 12344555555555555555555555554
Q ss_pred HHh
Q 039029 159 VLS 161 (319)
Q Consensus 159 ~~~ 161 (319)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
No 151
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.23 E-value=9.7e-05 Score=57.57 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=103.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHhhhccHHHHHHHHHHHhhC---CCCcc--HHHHHHHH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHK----GIQP-TMLTYTSLIFVLSKQNRMIEADQLFENFLAK---GMLPD--IVMFNALI 192 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~~l~ 192 (319)
..|...|++++|.+.|.+.... +-+. -...|.....+|. ..++++|...+++.... .-.|+ ...+..+.
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA 121 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELA 121 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4455556666665555554321 1000 1123333333333 33666666666655432 11122 34566677
Q ss_pred HHHhcC-CcHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcch-hh
Q 039029 193 DGHCTN-GNIERAFSLLKEMDRM----KVHPD--EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR-LT 264 (319)
Q Consensus 193 ~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ 264 (319)
..|... |++++|.+.|++..+. + .+. ..++..+...+.+.|++++|.++|+++.......+.. ..+. ..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~--~~~~~~~ 198 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL--KYSAKEY 198 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT--GHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc--chhHHHH
Confidence 788888 8999999999887443 2 111 3456677888999999999999999988754332211 1112 23
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhC--CCCCC--hHHHHHHHHHhhh
Q 039029 265 YNALIQGLCKNQEGDLAEELLREMVSK--GITPD--DNTYFSLIEGIAS 309 (319)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~ 309 (319)
|...+-++...||+..|.+.+++.... ++..+ ......|+.++..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 334455777889999999999998865 22222 3445556666643
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.23 E-value=6.3e-05 Score=47.66 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC
Q 039029 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198 (319)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
..+...+...|++++|...+++..+.. +.+...+..+..++...++++.|.+.++........ +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 334445555556666666665555442 223344555555555555555565555555544322 233444455555555
Q ss_pred CcHHHHHHHHHHHHh
Q 039029 199 GNIERAFSLLKEMDR 213 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~ 213 (319)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.21 E-value=5.1e-06 Score=51.55 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 039029 27 EEASRMLEQ 35 (319)
Q Consensus 27 ~~a~~~~~~ 35 (319)
+.|+.++++
T Consensus 6 ~~Ai~~~~k 14 (84)
T PF12895_consen 6 ENAIKYYEK 14 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.20 E-value=2.8e-06 Score=41.31 Aligned_cols=29 Identities=48% Similarity=0.951 Sum_probs=20.8
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCC
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENG 40 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 40 (319)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777776655
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.19 E-value=7.1e-05 Score=58.10 Aligned_cols=132 Identities=9% Similarity=0.099 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHH-HhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG-HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
+|..++...-+.+..+.|..+|.++.+.+. .+..+|...... |...++.+.|..+|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344444444444445555555554443211 122222222222 11123334455555544332 233344444444444
Q ss_pred HcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
...++.+.|..+|++.+.. +.++. -....|...+.-=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~----~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEK----QSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHH----HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555554432 11110 0113444444444445555555555555444
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=5.9e-06 Score=51.29 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 039029 63 MAFSFRDE 70 (319)
Q Consensus 63 ~a~~~~~~ 70 (319)
.|+.++++
T Consensus 7 ~Ai~~~~k 14 (84)
T PF12895_consen 7 NAIKYYEK 14 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.18 E-value=9.1e-05 Score=59.63 Aligned_cols=91 Identities=9% Similarity=0.014 Sum_probs=59.8
Q ss_pred HHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH
Q 039029 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV 236 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (319)
...+...|+++.|+..|.++++.... +...|..+..+|...|++++|...++++.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 34455667777777777777765433 45666666667777777777777777776653 23455666666777777777
Q ss_pred HHHHHHHHHHHHc
Q 039029 237 EEARRLLDQMKRR 249 (319)
Q Consensus 237 ~~a~~~~~~~~~~ 249 (319)
++|...|+++++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776663
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.18 E-value=0.00017 Score=56.07 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM-ERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
+|..+++..-+.+..+.|..+|.+.++.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 1233333333333222 33444455555555543 223445555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCccH---HHHHHHHHHHhhhccHHHHHHHHHHHhh
Q 039029 126 CRCGNAKKAFSLHDEMIHKGIQPTM---LTYTSLIFVLSKQNRMIEADQLFENFLA 178 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.+.++.+.|..+|++.... ++++. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 22211 2455555544555555555555554444
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=0.00017 Score=56.18 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=13.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQM 36 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~ 36 (319)
|......|...+++++|.+.|...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 444555555556666666666554
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00087 Score=52.98 Aligned_cols=279 Identities=13% Similarity=0.020 Sum_probs=163.5
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
...+.+..++..|+..+....+..+. ++.-|..-+..+...++++++.--.+.-++.... ........-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 34455667788888888888886543 5666777777777788888887666655543211 111222333333333333
Q ss_pred hHHHHHHH---------------HHhhCC-CCCChHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 97 VEADDMLK---------------EMGEKG-IVPDSITYNIL-INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 97 ~~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
.+|.+.++ .+.... -+|....|..+ ..++.-.|++++|.++--...+.+ ..+......-..+
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccc
Confidence 33333332 111111 11333344433 355667788888888777666653 2233333333344
Q ss_pred HhhhccHHHHHHHHHHHhhCCCCccHHH-------------HHHHHHHHhcCCcHHHHHHHHHHHHhCC---CCCChhhH
Q 039029 160 LSKQNRMIEADQLFENFLAKGMLPDIVM-------------FNALIDGHCTNGNIERAFSLLKEMDRMK---VHPDEVTY 223 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 223 (319)
+.-.++.+.+...|++.++.+ |+... +..=..-..+.|.+..|.+.+.+.+..+ +.|+...|
T Consensus 213 ~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 556778888888888877764 33221 1222233456788899999998887643 33455566
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC-ChHHHHH
Q 039029 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP-DDNTYFS 302 (319)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 302 (319)
........+.|+.++|+.--+...+.+ +.. +..|..-..++...++|++|.+-++...+..-.+ ...++..
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD--~sy------ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~ 362 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKID--SSY------IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLRE 362 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 667777788899999988888877632 221 1344444556667788888888888877653333 2334444
Q ss_pred HHHHhh
Q 039029 303 LIEGIA 308 (319)
Q Consensus 303 l~~~~~ 308 (319)
...++.
T Consensus 363 A~~aLk 368 (486)
T KOG0550|consen 363 AQLALK 368 (486)
T ss_pred HHHHHH
Confidence 444444
No 161
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.17 E-value=0.00042 Score=60.68 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 039029 60 NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHD 139 (319)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (319)
+...++..|-+..+... --...|..|...|....+...|.+.|+...+.... +...+......|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35666666665555432 23567888888888888899999999999887554 77888899999999999999999843
Q ss_pred HHHHcCCCccH--HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCC
Q 039029 140 EMIHKGIQPTM--LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH 217 (319)
Q Consensus 140 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (319)
...+.. +... ..|....-.|.+.++...+..-|+...+..+. |...|..++.+|..+|++..|.++|.++... .
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 333321 1111 22333444567888999999999998887655 8899999999999999999999999998775 3
Q ss_pred CChhhHHHH--HHHHHcCCcHHHHHHHHHHHHHc
Q 039029 218 PDEVTYNTL--MHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 218 ~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
|+.. |... ...-+..|.+.+|...+...+..
T Consensus 627 P~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 627 PLSK-YGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred cHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4432 2222 23345678999999888877653
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.17 E-value=0.00044 Score=47.49 Aligned_cols=91 Identities=10% Similarity=-0.069 Sum_probs=44.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCC
Q 039029 51 LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (319)
+...+...|++++|.++|+.+...++ -+..-|..|..++-..|++++|+..|.......+. ++..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 33344445555555555555544431 13334444444555555555555555555544432 44555555555555555
Q ss_pred hHHHHHHHHHHHH
Q 039029 131 AKKAFSLHDEMIH 143 (319)
Q Consensus 131 ~~~a~~~~~~~~~ 143 (319)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.15 E-value=0.00018 Score=57.97 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=75.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
....+...|++++|++.|+++.+.... +...|..+..++...|++++|+..+++++... +.+...|..+..++...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 355667788999999999998886543 66778888888889999999999999888875 3366778888888888999
Q ss_pred hhHHHHHHHHHhhCCC
Q 039029 96 MVEADDMLKEMGEKGI 111 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~ 111 (319)
+++|...|++..+..+
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999988887643
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.15 E-value=3.5e-06 Score=40.95 Aligned_cols=30 Identities=47% Similarity=0.711 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVSKGI 293 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 293 (319)
+|+.++++|.+.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999998874
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=0.00014 Score=49.94 Aligned_cols=95 Identities=5% Similarity=-0.148 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 039029 83 YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (319)
...+...+...|++++|.++|+.+....+. +..-|..|..++...|++++|+..|......+ +.++..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444556667777777777776665443 56666666777777777777777777766665 3456666666667777
Q ss_pred hccHHHHHHHHHHHhhC
Q 039029 163 QNRMIEADQLFENFLAK 179 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~ 179 (319)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777666554
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.14 E-value=0.00011 Score=52.45 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcch
Q 039029 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP--DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR 262 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 262 (319)
...+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++++... .|.. .
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~------~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFL------P 106 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCc------H
Confidence 4455666667777788888888888876543222 2346777888888888888888888887764 3332 1
Q ss_pred hhHHHHHHHHH-------hcCchhHHHHHHHHH
Q 039029 263 LTYNALIQGLC-------KNQEGDLAEELLREM 288 (319)
Q Consensus 263 ~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 288 (319)
.++..+...+. ..|+++.|...+++.
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 34555555555 778877665555544
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.13 E-value=0.00013 Score=52.06 Aligned_cols=81 Identities=14% Similarity=-0.057 Sum_probs=48.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHH
Q 039029 45 AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP--TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (319)
...|..+...+...|++++|+..|+........+ ...++..+..++...|++++|...+++....... ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 4455666666667777777777777776543222 2235666666777777777777777776654322 344455555
Q ss_pred HHHH
Q 039029 123 NGYC 126 (319)
Q Consensus 123 ~~~~ 126 (319)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=5e-05 Score=57.13 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=62.1
Q ss_pred HHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 039029 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (319)
-..+.+++.+|+..|.++++..+. |...|..-..+|.+.|.++.|.+-.+.....+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777777776433 55666666777777777777777777666643 2235567777777777777777
Q ss_pred HHHHHHHHHHcCCCCCC
Q 039029 239 ARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 239 a~~~~~~~~~~~~~~~~ 255 (319)
|.+.|++.++ +.|+.
T Consensus 168 A~~aykKaLe--ldP~N 182 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDN 182 (304)
T ss_pred HHHHHHhhhc--cCCCc
Confidence 7777777666 44444
No 169
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.12 E-value=0.0034 Score=51.61 Aligned_cols=187 Identities=12% Similarity=0.049 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC---chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 039029 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER---KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (319)
-+++..+++..+..-...+..+|..+...--..- ..+.....++++...-..--..+|..+++...+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455556665554322223333333332211111 2556666777766543332345677888888888889999999
Q ss_pred HHHHHHcCCCc-cHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Q 039029 138 HDEMIHKGIQP-TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV 216 (319)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (319)
|.++.+.+..+ ...+.++++..++ .++..-|.++|+--.+. ...++.--...+..+...++-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999887665 5667777777665 57888999999866554 222445556677888889999999999999988755
Q ss_pred CCC--hhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 217 HPD--EVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 217 ~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
.++ ...|..++..=..-|+...+.++-++....
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 554 468999999989999999999998887654
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.11 E-value=0.002 Score=48.87 Aligned_cols=184 Identities=10% Similarity=0.059 Sum_probs=108.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhh---HHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST---YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (319)
++..+-.....+...|++++|.+.|+.+....+.+ ... .-.++.++.+.+++++|...+++..+..+......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44444445556677899999999999998864322 222 24566788899999999999999988754433334444
Q ss_pred HHHHHHh--c---------------CC---hHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC
Q 039029 121 LINGYCR--C---------------GN---AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180 (319)
Q Consensus 121 l~~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (319)
.+.+.+. . .+ ..+|+..|+.+++. -|++ .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 4433321 1 11 23455666666665 2332 1123333333332221
Q ss_pred CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 039029 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM--KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247 (319)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (319)
=...-..+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111114556677778887777777777654 112234455667788888888888877766554
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.09 E-value=0.00049 Score=49.34 Aligned_cols=91 Identities=13% Similarity=-0.009 Sum_probs=64.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT--ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 344567777788888888888888888876533222 356777788888888888888888888776433 56666667
Q ss_pred HHHHHhcCChHHHH
Q 039029 122 INGYCRCGNAKKAF 135 (319)
Q Consensus 122 ~~~~~~~~~~~~a~ 135 (319)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.08 E-value=0.00041 Score=49.73 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 039029 79 TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD--SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344567777788888999999999998876543322 4577888888899999999999998888763 3355666666
Q ss_pred HHHHhhhccHHHHH
Q 039029 157 IFVLSKQNRMIEAD 170 (319)
Q Consensus 157 ~~~~~~~~~~~~a~ 170 (319)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777766654443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=0.0016 Score=55.06 Aligned_cols=138 Identities=10% Similarity=0.074 Sum_probs=99.1
Q ss_pred CCCCChHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh--------ccHHHHHHHHHHH
Q 039029 110 GIVPDSITYNILINGYCRCG-----NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ--------NRMIEADQLFENF 176 (319)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 176 (319)
..+.+...|...+++..... +...|..+|++..+.. |.....+..+..++... .++..+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567788888887754432 3678999999999874 33455666554444322 2233444444443
Q ss_pred hhC-CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 177 LAK-GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 177 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
... ....+...+..+.-.+...|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++...+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 123356778877777777899999999999999875 688899999999999999999999999998743
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.01 E-value=0.0014 Score=47.46 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 039029 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (319)
+-+-|.+++++|...|+-||..++..++..+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456789999999999999999999999999877664
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0038 Score=47.39 Aligned_cols=54 Identities=9% Similarity=-0.059 Sum_probs=24.8
Q ss_pred HHHHhhhccHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039029 157 IFVLSKQNRMIEADQLFENFLAK--GMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
.+.|.+.|.+..|..-++.+++. +.+........+..+|...|..++|......
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555555555555443 1112233444444555555555555544433
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.98 E-value=0.0015 Score=48.27 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhCCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 85 LLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.....+...|++.+|.+.|+.+....+. --....-.++.++.+.|+++.|...++...+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455666666666666666554221 12233444556666666666666666666554
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00098 Score=50.62 Aligned_cols=112 Identities=19% Similarity=0.119 Sum_probs=80.2
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC---CcHHHHHHHHHHHHHcCCCCCCcccCc
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ---GKVEEARRLLDQMKRRGIKPDHISFNP 260 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (319)
|...|..|...|...|+...|..-|.+..+.. .++...+..+..++... ....++..+|++++.. .|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~------ 225 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPA------ 225 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCc------
Confidence 77888888888888888888888888887753 45666666666665433 2366788888888874 333
Q ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 039029 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306 (319)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (319)
++.+...|...+...|++.+|...|+.|++. -|....+..+++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 3367777888888888898888888888876 3444444555443
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00028 Score=53.23 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=69.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHH
Q 039029 55 YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA 134 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (319)
+.+.+++.+|+..|.+.++.. +-|...|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 456777778888887777764 235666666777777778777777777777665433 566777777778888888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 135 FSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
.+.|++..+. .|+-.+|-.=+..
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHHH
Confidence 7777777664 4555555544444
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.95 E-value=0.0018 Score=42.79 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=23.7
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPD--SITYNILINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
+-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443321 12233344444444555555555544443
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.94 E-value=0.00024 Score=51.21 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=54.6
Q ss_pred cChhhHHHHHHHHHH-----cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHH
Q 039029 78 PTASTYNLLIHELLM-----ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (319)
.+..+|..++..+.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+. -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 355566666665543 35566666677777777777777777777776654 2221 0111111110
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCC
Q 039029 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
- .-.+-+-|++++++|...|+.||..++..++..+++.+
T Consensus 114 ------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 ------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0 01223445555555555555555555555555555444
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.91 E-value=8.1e-05 Score=58.59 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHH----HhCCCC-CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcc
Q 039029 187 MFNALIDGHCTNGNIERAFSLLKEM----DRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (319)
.|..|...|.-.|+++.|+...+.- .+.|-+ .....+..+..++.-.|+++.|.+.|+......+.....+ ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~--vE 274 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT--VE 274 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh--HH
Confidence 3445555555566677666544321 222211 1233455666667777777777777766433222111100 11
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhC-----CCCCChHHHHHHHHHhhhcchhhhh
Q 039029 262 RLTYNALIQGLCKNQEGDLAEELLREMVSK-----GITPDDNTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A 316 (319)
..+.-+|..+|.-..++++|+.++++-+.. +..-....+++|..++...|..+.|
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 133445666666666777777666553321 1223455666777777766666655
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.0033 Score=53.20 Aligned_cols=143 Identities=12% Similarity=0.007 Sum_probs=96.5
Q ss_pred CCcChhhHHHHHHHHHHc-----CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 039029 76 IMPTASTYNLLIHELLME-----RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG--------NAKKAFSLHDEMI 142 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 142 (319)
.+.+...|...+++.... ++...|..+|++..+..+. ....|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 455667787777775432 2366888888888887543 4555555444333221 1223333333333
Q ss_pred Hc-CCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh
Q 039029 143 HK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221 (319)
Q Consensus 143 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (319)
.. ..+.+...+..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++....+ |...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence 32 134455777777666677899999999999999875 578889999999999999999999999987753 5544
Q ss_pred hH
Q 039029 222 TY 223 (319)
Q Consensus 222 ~~ 223 (319)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.87 E-value=6.7e-05 Score=44.33 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=29.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 22 KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
+.|++++|+++|+.+....+. +..++..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666554322 5555555666666666666666666665554
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.85 E-value=0.0057 Score=45.14 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=33.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLV--PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
....+.+.|++.+|++.|+.+....+. -.....-.++.++.+.|+++.|...+++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555667777777777766654211 12234445566666677777777777666655
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.84 E-value=0.0027 Score=42.00 Aligned_cols=91 Identities=23% Similarity=0.172 Sum_probs=54.1
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC----hhhHHHHHHH
Q 039029 156 LIFVLSKQNRMIEADQLFENFLAKGMLPD--IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD----EVTYNTLMHG 229 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 229 (319)
...++...|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34455666777777777777776665433 2345556666777777777777777765532 22 1222223345
Q ss_pred HHcCCcHHHHHHHHHHHHH
Q 039029 230 RCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~ 248 (319)
+...|+.++|.+.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5667777777776665543
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.84 E-value=0.00029 Score=55.58 Aligned_cols=270 Identities=16% Similarity=0.050 Sum_probs=158.9
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHH--Hc--CCC-cChhhHHHHHH
Q 039029 18 SGMCKEGRLEEASRMLEQMKENGLVPTA----VTYNTLIDGYCNKGNLEMAFSFRDEMV--KQ--GIM-PTASTYNLLIH 88 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~~-~~~~~~~~l~~ 88 (319)
.-+++.|+......+|+...+.|.. |. .+|..+..+|.-.+++++|+++...=+ .. |-. -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578999999999999999987754 32 357778888888899999988653311 11 100 01112222333
Q ss_pred HHHHcCchhHHHHHHHHH----hhCCC-CCChHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH
Q 039029 89 ELLMERKMVEADDMLKEM----GEKGI-VPDSITYNILINGYCRCGN--------------------AKKAFSLHDEMIH 143 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 143 (319)
.+-..|.+++|...-.+- .+.|. ......+..+...|...|. ++.|.+.|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 344455666655432221 11111 1133455556666655542 2334444433221
Q ss_pred ----cCC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhh----CCCC-ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 144 ----KGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLA----KGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 144 ----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.|- -.-...|..+...|.-.|+++.|+...+.-+. .|-. .....+..+..++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 110 01123566666666778899998877654322 2211 1245677888999999999999998876532
Q ss_pred ----CCC-CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHH
Q 039029 214 ----MKV-HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288 (319)
Q Consensus 214 ----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 288 (319)
.|- .....+.-.|...|.-..++++|+.++.+-+...-..+.. --...++.+|..+|...|..++|+.+...-
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr--iGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR--IGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 221 1233455667888888888999999887643311000000 011257778999999999999999887766
Q ss_pred Hh
Q 039029 289 VS 290 (319)
Q Consensus 289 ~~ 290 (319)
++
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 54
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.83 E-value=0.00022 Score=42.22 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc-cHHHHHHHHHHHh
Q 039029 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN-RMIEADQLFENFL 177 (319)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 177 (319)
+..|..+...+...|++++|+..|++..+.+ +.+...+..+..++...| ++++|.+.+++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444555555555555555555555442 233444444445555554 4555555554443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=0.00023 Score=41.54 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=29.5
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 88 HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
..+...|++++|...|+++.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555554432 4555555555555555555555555555443
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=0.00016 Score=42.20 Aligned_cols=58 Identities=14% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
+...+.+.|++++|+..|+++.+... -+...+..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556667777777777777776542 25566666777777777777777777766654
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=0.00025 Score=41.97 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-cHHHHHHHHHHHHH
Q 039029 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG-KVEEARRLLDQMKR 248 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 248 (319)
..+|..+...+...|++++|+..|.+..+.+ +.+...|..+..++...| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666667777777777777766653 334556666666677776 57777777766655
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0041 Score=47.37 Aligned_cols=102 Identities=14% Similarity=0.039 Sum_probs=69.9
Q ss_pred CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC---CcHHHHHHHHHHHHhCCCCCChhhH
Q 039029 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN---GNIERAFSLLKEMDRMKVHPDEVTY 223 (319)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (319)
+.|...|..|..+|...|+.+.|...|.+..+... ++...+..+.+++... ....++..+|+++...+ +-+....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 55777788888888888888888888877776632 2555555555544333 23567777888777654 3456666
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 224 NTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 667777778888888888888887763
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=0.00018 Score=42.46 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=6.1
Q ss_pred HHHHHhcCChHHHHHHHH
Q 039029 122 INGYCRCGNAKKAFSLHD 139 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~ 139 (319)
..+|.+.|++++|..+++
T Consensus 32 a~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 32 AQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333333333333333333
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0067 Score=48.24 Aligned_cols=254 Identities=12% Similarity=-0.019 Sum_probs=151.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCC
Q 039029 51 LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (319)
....+.+..++..|+..+...++..+. +..-|..-+..+...++++++.--.+.-.+.... ........-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHH
Confidence 334566677888899999888887533 4555655566666777777776655554433111 11122222233333333
Q ss_pred hHHHHHHHH---------------HHHHcC-CCccHHHHHHH-HHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 039029 131 AKKAFSLHD---------------EMIHKG-IQPTMLTYTSL-IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193 (319)
Q Consensus 131 ~~~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
..+|.+.++ ...... -+|....+..+ ..++.-.|+.++|.++--..++... ...+..+++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vr 209 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVR 209 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhc
Confidence 333333332 111111 12322333333 2445678888888888777776632 222333333
Q ss_pred --HHhcCCcHHHHHHHHHHHHhCCCCCChhhH---HH----------HHHHHHcCCcHHHHHHHHHHHHHcCCCCCCccc
Q 039029 194 --GHCTNGNIERAFSLLKEMDRMKVHPDEVTY---NT----------LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258 (319)
Q Consensus 194 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~----------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 258 (319)
++...++.+.+...|++....+ |+...- .. =..-..+.|++..|.+.|.+.+. +.|+. .
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n--~ 283 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSN--K 283 (486)
T ss_pred ccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccc--c
Confidence 3445678899999999887754 443221 11 12234678999999999999876 45554 5
Q ss_pred CcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhhcchhhhhc
Q 039029 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD-DNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.|+...|.....+..+.|+..+|+.-.++..+. .++ ...+..-.+++...+++++|.
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999999999999999999988763 222 112222233456677777763
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.67 E-value=0.0017 Score=43.40 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCC--------CCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI--------KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
..++..++.++++.|+.+....+++..-.-++ .+......|+..+..+++.+|+..|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44566666666666766666666655421110 1222236789999999999999999999999999998875
Q ss_pred -CCCCChHHHHHHHHHhhhc
Q 039029 292 -GITPDDNTYFSLIEGIASV 310 (319)
Q Consensus 292 -~~~~~~~~~~~l~~~~~~~ 310 (319)
+++.+..+|..|++=+...
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 7888899999998854433
No 195
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.67 E-value=0.00012 Score=44.60 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHcC--CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 221 VTYNTLMHGRCRQGKVEEARRLLDQMKRRG--IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
.+++.+...|...|++++|+..|++..+.. ..++. +-...++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---PDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467888899999999999999999887651 11111 11257889999999999999999999998764
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.63 E-value=0.0024 Score=48.86 Aligned_cols=98 Identities=15% Similarity=-0.010 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC--CChHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP--TASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PDSITYNILI 122 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 122 (319)
.|...+....+.|++++|+..|+.+++..+.. ....+..+..+|...|++++|...|+.+.+..+. .....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455567777777777776653211 1245556666677777777777777777654221 1233444455
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.++...|+.++|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5666677777777777777665
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0039 Score=46.46 Aligned_cols=150 Identities=8% Similarity=0.007 Sum_probs=111.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHH
Q 039029 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (319)
-.+..+++|++=. ..+.+.++.++.-.+.+.-....+.+.++...+.++.....+.+...+.||.+.|...|+
T Consensus 164 ~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 164 AEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred chhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3366677776533 246677888888888999999999999988767788888899999999999999999999
Q ss_pred HHhhCCCCCChHHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 105 EMGEKGIVPDSITYN-----ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 105 ~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
...+..-..+..+.+ .....|.-.+++..|...+.+....+ +.++...+.-.-+..-.|+..+|.+.++.+...
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 776543333444433 33456677788999999998888765 345555555555556678999999999999887
Q ss_pred CCC
Q 039029 180 GML 182 (319)
Q Consensus 180 ~~~ 182 (319)
.+.
T Consensus 316 ~P~ 318 (366)
T KOG2796|consen 316 DPR 318 (366)
T ss_pred CCc
Confidence 433
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.0077 Score=41.81 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
...++..+...|++++|..+.+.+.... |.+...+..++.++...|+...|.++|+.+.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344455555566666666666655553 4455556666666666666666665555543
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.024 Score=44.90 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=18.4
Q ss_pred cHHHHHHHHhccCChHHHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQ 35 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~ 35 (319)
+|..+.......|+.+-|..+++.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~ 25 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL 25 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc
Confidence 467777788888888888887754
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.57 E-value=0.0041 Score=47.62 Aligned_cols=98 Identities=10% Similarity=-0.020 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhhhccHHHHHHHHHHHhhCCC--CccHHHHHH
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT---MLTYTSLIFVLSKQNRMIEADQLFENFLAKGM--LPDIVMFNA 190 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 190 (319)
..|......+.+.|++++|...|+.+.... |-+ ...+..+..+|...|++++|...|..+.+... +.....+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344444444455677777777777776652 111 24566666777777777777777777765421 112344444
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 191 LIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666677777777777776654
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.019 Score=43.03 Aligned_cols=130 Identities=17% Similarity=0.062 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHH-----HH
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL-----IF 158 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~ 158 (319)
+.++.+..-.+.+.-....+.+.++...+.++.....|++.-.+.||.+.|...|+...+..-..+..+++.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4444555555556666666666665554555555666666666666666666666654432112222222222 22
Q ss_pred HHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
.+.-.+++..+...+.++...+.. ++...|.-.-+....|+...|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445555555555555444322 3333333222333345555555555555543
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.50 E-value=0.0013 Score=39.38 Aligned_cols=65 Identities=22% Similarity=0.135 Sum_probs=52.8
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHH
Q 039029 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYF 301 (319)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 301 (319)
...|.+.+++++|.+++++++.. .|+. ...|......+.+.|++++|.+.+++..+. .|+.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDD------PELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--Cccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHH
Confidence 35688999999999999999985 3443 267888999999999999999999999986 46555443
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.47 E-value=0.037 Score=44.38 Aligned_cols=166 Identities=12% Similarity=0.032 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCC---CCCChHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCccHHHHHH
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKG---IVPDSITYNILINGYCR---CGNAKKAFSLHDEMIHKGIQPTMLTYTS 155 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
+...++-+|-...+++...++++.+.... +..+...-....-++.+ .|+.++|++++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33444555666677777777777766541 11122222233444555 6777777777777555444566667766
Q ss_pred HHHHHhh---------hccHHHHHHHHHHHhhCCCCccHHH---HHHHHHHHhcC-CcHHHHHHHH---H-HHHhCCC--
Q 039029 156 LIFVLSK---------QNRMIEADQLFENFLAKGMLPDIVM---FNALIDGHCTN-GNIERAFSLL---K-EMDRMKV-- 216 (319)
Q Consensus 156 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~-~~~~~a~~~~---~-~~~~~~~-- 216 (319)
+...|-. ....+.|...|.+.-+.. |+... +..|+...... ....+...+- . .+.+.|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 6665531 223566777776655442 33211 12222222211 1111222222 1 1112221
Q ss_pred -CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 217 -HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 217 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
..+-..+..++.++.-.|+.++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 234445566777888888888888888888765
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.43 E-value=0.021 Score=40.44 Aligned_cols=153 Identities=14% Similarity=0.015 Sum_probs=101.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCCh
Q 039029 52 IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA 131 (319)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (319)
..+..+.=+++...+-..+-.. ..|++.....|...+...|+..+|...|++...--+.-|......+..+....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3344444455554433322222 35777777788888888999999999998887655556777778888888888999
Q ss_pred HHHHHHHHHHHHcCC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHH
Q 039029 132 KKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLL 208 (319)
Q Consensus 132 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (319)
..|...++++.+... .-++.+...+.+.+...|.+.+|+..|+.....- |+...-......+.+.|+.+++..-+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 999888888877531 0122345556677888888888888888888763 44443333444455666555544433
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.41 E-value=0.022 Score=40.33 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=105.6
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC---CCccHHHH
Q 039029 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG---MLPDIVMF 188 (319)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 188 (319)
.|+...-..|..+....|++.+|...|++...--+.-|......+..+....+++..+...++.+.+.. ..|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 467778888999999999999999999998876566688888999999999999999999999988763 2344 44
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH----HHHHHHH
Q 039029 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR----LLDQMKR 248 (319)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~ 248 (319)
..+.+.+...|.+.+|+.-|+..... -|+...-......+.++|+.+++.. +++.+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 56778888999999999999998875 5666665666667778887766654 4455444
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.0033 Score=43.69 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCccHHHHH
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH-----KGIQPTMLTYT 154 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 154 (319)
+...++..+...|+++.|..+.+.+....+. +...|..+|.++...|+...|.++|+.+.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4455667778889999999999999887654 888999999999999999999999988754 37777776543
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.072 Score=46.01 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHH
Q 039029 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268 (319)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (319)
+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..++|++-+++-+.... | .-|...
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks----P---------IGy~PF 750 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS----P---------IGYLPF 750 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----C---------CCchhH
Confidence 333444556677777777766654 47888888888888888998887776555321 2 467888
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
+.+|.+.|+.++|.+++-+.-. .. ....+|.+.|++.+|++
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHH
Confidence 9999999999999988765432 11 56678888888888864
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.40 E-value=0.012 Score=40.91 Aligned_cols=87 Identities=11% Similarity=-0.093 Sum_probs=49.7
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+...|++++|..+|+-+.-.++. +..-|..|..++...+++++|...|......+ ..|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 44566666666666666554433 45555566666666666666666666555443 22333444445556666666666
Q ss_pred HHHHHHHhh
Q 039029 170 DQLFENFLA 178 (319)
Q Consensus 170 ~~~~~~~~~ 178 (319)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665555
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.002 Score=38.49 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=31.8
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 18 SGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
..+.+.+++++|+++++.+...++. ++..+.....++...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455556666666666666554322 4455555555666666666666666665554
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.31 E-value=0.0019 Score=39.22 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-Ccc-HHHHHHHHHHHhhhccHHHHHHHHHHHh
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHK----GI-QPT-MLTYTSLIFVLSKQNRMIEADQLFENFL 177 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
.+++.+...|...|++++|+..|++..+. |. .|. ..++..+..++...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666655532 10 111 3345555555666666666666655543
No 211
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.033 Score=47.71 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHH
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (319)
+....-.+..++...|.-++|.+.+-+.. .| ...+..|...++|.+|.++.++
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666776666666554321 12 2345566666677777666554
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=97.26 E-value=0.024 Score=39.38 Aligned_cols=89 Identities=13% Similarity=-0.030 Sum_probs=56.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHH
Q 039029 54 GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (319)
-+...|++++|..+|..+...+. -+..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 34566777777777777666542 24445556666666677777777777665544432 45555556667777777777
Q ss_pred HHHHHHHHHHc
Q 039029 134 AFSLHDEMIHK 144 (319)
Q Consensus 134 a~~~~~~~~~~ 144 (319)
|...|......
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 77777766653
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.045 Score=46.91 Aligned_cols=206 Identities=12% Similarity=0.026 Sum_probs=129.3
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCc--------ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC
Q 039029 42 VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIMP--------TASTYNLLIHELLMERKMVEADDMLKEMGEKGIV 112 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (319)
.|.+..|..+.......-.++.|+..|-+...- |++. +...-..-+.+ --|++++|+++|-++.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 377788888888777777777777777655432 2211 00111111222 2378888888887776542
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHH
Q 039029 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191 (319)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (319)
..+..+.+.|+|-.+.++++.--.. +-..-...++.+...+.....+++|.+.|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2466777888888777776532111 0011235788888888888888888888875332 1235
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHH
Q 039029 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG 271 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (319)
+.++.+..++++.+.+.+.+ +.+....-.+..++.+.|.-++|.+.+-+--. | ...+.+
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p------------kaAv~t 887 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P------------KAAVHT 887 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c------------HHHHHH
Confidence 56666666666655555443 44566777788888999998888887755311 1 345667
Q ss_pred HHhcCchhHHHHHHHHH
Q 039029 272 LCKNQEGDLAEELLREM 288 (319)
Q Consensus 272 ~~~~g~~~~A~~~~~~~ 288 (319)
|...++|.+|.++.++.
T Consensus 888 Cv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77788888887776654
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.16 E-value=0.014 Score=39.04 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCccHHHHHHHH
Q 039029 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLI 157 (319)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 157 (319)
.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344444444444444444444444444444432 3333344444444
No 215
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.09 E-value=0.073 Score=44.30 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=86.4
Q ss_pred HHHHcCchhHHHHHHH--HHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccH
Q 039029 89 ELLMERKMVEADDMLK--EMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
...-.++++.+.++.+ ++.. .+ +....+.++..+.+.|-.+.|+++-..-.. -.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCH
Confidence 3444566666655554 1111 11 244466677777777777777766432211 12333466777
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
+.|.++.++. .+...|..|.......|+++-|++.|.+..+ |..|+-.|...|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7776554432 2566777777777777887777777776543 455666667777777777777666
Q ss_pred HHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
...| -++....++.-.|+.++..+++.+
T Consensus 400 ~~~~-------------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG-------------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT--------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc-------------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6554 245556666667777777766654
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.09 E-value=0.0089 Score=48.62 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCccc
Q 039029 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE----VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258 (319)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 258 (319)
.+...++.+..+|...|++++|...|++..+.+ |+. .+|..+..+|...|+.++|...++++++.+ .
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n------ 143 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N------ 143 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c------
Confidence 357888999999999999999999999988864 553 358889999999999999999999998852 1
Q ss_pred CcchhhHHHHHH--HHHhcCchhHHHHHHHHHHhCCC
Q 039029 259 NPTRLTYNALIQ--GLCKNQEGDLAEELLREMVSKGI 293 (319)
Q Consensus 259 ~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 293 (319)
..|..+.. .+....+.++..++++.+...|.
T Consensus 144 ----~~f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 144 ----LKFSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred ----hhHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 12321111 11122334466677777777664
No 217
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.08 E-value=0.047 Score=37.56 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=70.9
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (319)
..++..+...+.......+++.+...+. .+....+.++..|++.+. .+..+.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3444555555666666666666666543 455666666666665532 333333331 12334445567777777
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhc-CchhHHHHHHHHHHhCCCCCChHHHHHHHHHhh
Q 039029 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN-QEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308 (319)
Q Consensus 234 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (319)
+-++++..++.++.. +...+..+... ++++.|.+++++ .-+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~----------------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN----------------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC----------------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 777777777766522 33444444444 677777776664 125556666666554
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.08 E-value=0.11 Score=41.81 Aligned_cols=172 Identities=13% Similarity=0.057 Sum_probs=110.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCccHHHHHHHHHHHhh---hccHHHHHHHHHHHhhCCCCccHHH
Q 039029 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKG---IQPTMLTYTSLIFVLSK---QNRMIEADQLFENFLAKGMLPDIVM 187 (319)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (319)
+..+...++-+|....+++...++.+.+.... +.....+-.....++.+ .|+.+.|.+++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445566667999999999999999998752 22233333444556667 8999999999999776667778899
Q ss_pred HHHHHHHHhc---------CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc-H---HHHHHHH---H-HHHHcC
Q 039029 188 FNALIDGHCT---------NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK-V---EEARRLL---D-QMKRRG 250 (319)
Q Consensus 188 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~---~~a~~~~---~-~~~~~~ 250 (319)
+..+.+.|-. ....++|...|.+.-+. .|+...-..++..+.-.|. . .+..++- . .+.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9888877632 22467788888876554 3555544334433433443 1 1222222 2 222333
Q ss_pred CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
..... .+-=.+.+++.++.-.|++++|.+..++|...
T Consensus 298 ~~~~~----~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKM----QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22221 11123467888899999999999999999976
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.02 E-value=0.18 Score=43.16 Aligned_cols=264 Identities=14% Similarity=0.124 Sum_probs=136.3
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHH---------HHHHhCCCCCCHHhHHHHHHHHHhcCChH--HHHHHHHHHHHc
Q 039029 6 VQPDSYTYGSFVSGMCKEGRLEEASRML---------EQMKENGLVPTAVTYNTLIDGYCNKGNLE--MAFSFRDEMVKQ 74 (319)
Q Consensus 6 ~~p~~~~~~~li~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~ 74 (319)
+.|-...+.+-+..+...|.+++|.++- +.+... ..++-.++..=.+|.+.++.. +.+.-++++.+.
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 4455556666677778888888876532 111111 012233444445555554432 333445566666
Q ss_pred CCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHH-----HHHHHHhcCChHHHHHHHHHHHHc--CCC
Q 039029 75 GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI-----LINGYCRCGNAKKAFSLHDEMIHK--GIQ 147 (319)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 147 (319)
|-.|+... +...++-.|++.+|.++|.+-...+-. ...|+- ...-+...|..++-..+.++-.+. ++.
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k 704 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK 704 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC
Confidence 76666554 344566678888888887764322100 011111 122333344444333333222111 111
Q ss_pred ccHHHHHHHHHHHhhhccHHHHHHHHH------HHhhCCCC---ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCC
Q 039029 148 PTMLTYTSLIFVLSKQNRMIEADQLFE------NFLAKGML---PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (319)
.. ......+...|+.++|..+.- -+.+.+.. .+..+...+...+-+...+.-|.++|..|-+.
T Consensus 705 eP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 705 EP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred Cc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 11 122233344555555544321 11111111 13445555555556667777888888877542
Q ss_pred ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcc----cCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS----FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
..+++.....++|++|..+.++..+. .|+... +-....-|...-.+|.+.|+-.+|.++++++...
T Consensus 777 -----ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 -----KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred -----HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 34667778889999999888776542 222210 0011123445567788889999999999888654
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.00 E-value=0.09 Score=39.46 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=48.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChH
Q 039029 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298 (319)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 298 (319)
.+.+.|.+.|.+..|..-++++++. -|+.. -....+-.+..+|.+.|-.++|...-+-+... .|+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~--y~~t~---~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N--~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN--YPDTS---AVREALARLEEAYYALGLTDEAKKTAKVLGAN--YPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc--ccccc---chHHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCc
Confidence 4567788999999999999999886 22221 12356777888899999999998887666553 45543
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.98 E-value=0.15 Score=41.59 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=66.5
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHH------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH--HHH
Q 039029 20 MCKEGRLEEASRMLEQMKENGLVPTAV------TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH--ELL 91 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 91 (319)
+.+++++.+|.++|.++.+.. ..++. .-+.++++|.. ++.+.....+....+.. | ...|-.+.. .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 456788888888888876642 11211 22345555533 34454444444444431 1 112222222 234
Q ss_pred HcCchhHHHHHHHHHhhC--CCCC------------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CccHHHH
Q 039029 92 MERKMVEADDMLKEMGEK--GIVP------------DSITYNILINGYCRCGNAKKAFSLHDEMIHKGI----QPTMLTY 153 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 153 (319)
+.+++.+|.+.+....+. +..+ |-..-+..+.++...|++.++..+++++...=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 566666666665554433 1111 111123445566666777777766666655422 2455555
Q ss_pred HHHHHH
Q 039029 154 TSLIFV 159 (319)
Q Consensus 154 ~~l~~~ 159 (319)
+.++-.
T Consensus 171 d~~vlm 176 (549)
T PF07079_consen 171 DRAVLM 176 (549)
T ss_pred HHHHHH
Confidence 554333
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.90 E-value=0.16 Score=40.67 Aligned_cols=185 Identities=16% Similarity=0.111 Sum_probs=98.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCcChh--hHHHHHHHHHHcCchhH
Q 039029 23 EGRLEEASRMLEQMKENGLVPTAVTYNTLID--GYCNKGNLEMAFSFRDEMVKQGIMPTAS--TYNLLIHELLMERKMVE 98 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 98 (319)
.|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45666666666554432 2234444444443 334468888888888888753 1111 12223233345677888
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCccHH--HHHHHHHHH--h-hhccHHHHHHH
Q 039029 99 ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG-IQPTML--TYTSLIFVL--S-KQNRMIEADQL 172 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~--~-~~~~~~~a~~~ 172 (319)
|.++-+..-..... -...+...+...+..|+|+.|+++.+.-.... +.++.. .-..|+.+- . -..+...|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 88777777665433 45667778888888888888888887765532 222221 111222111 1 11223344443
Q ss_pred HHHHhhCCCCccHH-HHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 173 FENFLAKGMLPDIV-MFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
-.+..+. .||.. .--....++.+.|+..++-.+++.+-+.
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 3333332 23321 1122344556666666666666666554
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.88 E-value=0.056 Score=44.18 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=51.5
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA---VTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
.+...++.+..+|.+.|++++|+..|++..+.+.. +. .+|..+..+|...|+.++|+..+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566888888888888999999888888875433 22 35888888888888888888888888875
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.04 Score=43.95 Aligned_cols=97 Identities=13% Similarity=0.020 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
.++..+..++.+.+++..|++.-++.+..+.. |....-.-..++...|+++.|...|+++.+.. |.|..+-+.++.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 35566666777777777777777777766443 66666666677777777777777777777653 33444444444444
Q ss_pred hhhccHH-HHHHHHHHHhhC
Q 039029 161 SKQNRMI-EADQLFENFLAK 179 (319)
Q Consensus 161 ~~~~~~~-~a~~~~~~~~~~ 179 (319)
.+..... ...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 4433333 335566666543
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.85 E-value=0.047 Score=45.41 Aligned_cols=157 Identities=19% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHhccCChHHHHHHHHH--HHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc
Q 039029 18 SGMCKEGRLEEASRMLEQ--MKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
+...-+++++++.++.+. +.. .+ +....+.++..+.+.|.++.|+++..+-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 344455666666555541 111 11 13345666666666666666666543321 11233455666
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
.+.|.++.++. .+...|..|.....+.|+++-|.+.|.+.. -+..++-.|.-.|+.+...++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHH
Confidence 66666543332 255567777777777777777666665542 234444555556666665555555
Q ss_pred HhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039029 176 FLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210 (319)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
....|. ++....++.-.|+.+++.+++.+
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 554431 33333444445666666655554
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.073 Score=42.56 Aligned_cols=97 Identities=12% Similarity=-0.031 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 039029 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194 (319)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (319)
..++..+..++.+.+++..|++..++.+..+ ++|......-..++...|+++.|+..|+++++..+. |-.+-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4467788899999999999999999999886 678888888889999999999999999999987433 44445555555
Q ss_pred HhcCCcH-HHHHHHHHHHHh
Q 039029 195 HCTNGNI-ERAFSLLKEMDR 213 (319)
Q Consensus 195 ~~~~~~~-~~a~~~~~~~~~ 213 (319)
-.+.... ++..++|..|-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 4444443 444778888754
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.098 Score=39.61 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchh
Q 039029 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVH--PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263 (319)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 263 (319)
..|+.-+..+ +.|++..|...|....+.... -....+-+|..++...|++++|..+|..+.+.- |+.. .-+.
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~--P~s~---KApd 216 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY--PKSP---KAPD 216 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC--CCCC---CChH
Confidence 3677766654 677899999999998775311 123456779999999999999999999988752 3321 1226
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
++--|.....+.|+.++|..+|+++.+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7778888899999999999999999886
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.70 E-value=0.22 Score=39.53 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (319)
+.+..+.-+...|+...|.++-.+.. .|+...|..-+.+++..++|++...+... .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44444556667777777777765542 36888888888888888988877765432 224577888888888
Q ss_pred cCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
..|...+|..+..++ .+..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~-----------------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----------------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----------------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888887772 124567778888888888765443
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.12 Score=40.36 Aligned_cols=153 Identities=9% Similarity=-0.007 Sum_probs=98.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcChhhHHHHHHHHHHcCchhH
Q 039029 22 KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ---GIMPTASTYNLLIHELLMERKMVE 98 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 98 (319)
-+|++.+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++... ++|........+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356777777777777764 4446667777777788888888888888777654 222223333445556677888888
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---ccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 99 ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ---PTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
|++.-++..+.+.. |...-.+....+-..|+++++.+...+-...--. .-..-|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888888776543 6777777888888888888888776554322000 0111122223334556788888888874
Q ss_pred H
Q 039029 176 F 176 (319)
Q Consensus 176 ~ 176 (319)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.57 E-value=0.39 Score=40.68 Aligned_cols=180 Identities=19% Similarity=0.183 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcC-----hhhHHHHHHHHHH----cCch
Q 039029 27 EEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG-IMPT-----ASTYNLLIHELLM----ERKM 96 (319)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~ 96 (319)
.-..-+|.-+... +|| .+..+++...-.|+-+.+++.+.+..+.+ +.-. .-.|...+..+.. ....
T Consensus 174 ~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 174 YFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 3445566666654 232 34566666677788888888887766542 2111 1234444444433 3457
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHH-HHHHHHhcCChHHHHHHHHHHHHcC---CCccHHHHHHHHHHHhhhccHHHHHHH
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNI-LINGYCRCGNAKKAFSLHDEMIHKG---IQPTMLTYTSLIFVLSKQNRMIEADQL 172 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
+.+.++++.+.+. -|+...|.. -.+.+...|+.++|++.|+...... .......+--+.-.+.-..++++|...
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 7788888888876 345555543 3567777889999999998755321 112334555566677888999999999
Q ss_pred HHHHhhCCCCccHHHHHHHH-HHHhcCCcH-------HHHHHHHHHHHh
Q 039029 173 FENFLAKGMLPDIVMFNALI-DGHCTNGNI-------ERAFSLLKEMDR 213 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 213 (319)
|..+.+...- +..+|.-+. .++...|+. ++|.++|.++..
T Consensus 328 f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9988876433 444444433 334556666 888888887744
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.55 E-value=0.13 Score=35.01 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=22.0
Q ss_pred hccCChHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 21 CKEGRLEEASRMLEQMKENGL--VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
.+.|++++|.+.|+.+..+-+ +-...+--.++.++.+.++++.|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444444444444443311 111222333444444444444444444444444
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.091 Score=39.79 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=36.2
Q ss_pred cCChHHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC-C-ChHHHHHHHHHHHhcCChHH
Q 039029 58 KGNLEMAFSFRDEMVKQGIM--PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV-P-DSITYNILINGYCRCGNAKK 133 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~ 133 (319)
.|++..|...|...++..+. -....+.-|..++...|++++|..+|..+.+.-+. | -+..+--|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 33444444444444443211 11223333444444445555544444444432111 0 12334444444444455555
Q ss_pred HHHHHHHHHHc
Q 039029 134 AFSLHDEMIHK 144 (319)
Q Consensus 134 a~~~~~~~~~~ 144 (319)
|..+|+++.+.
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.44 E-value=0.31 Score=38.07 Aligned_cols=224 Identities=14% Similarity=0.125 Sum_probs=127.1
Q ss_pred HhccCChHHHHHHHHHHHhCC--CCCCHH------hHHHHHHHHHhcC-ChHHHHHHHHHHHHc--------CCCcC---
Q 039029 20 MCKEGRLEEASRMLEQMKENG--LVPTAV------TYNTLIDGYCNKG-NLEMAFSFRDEMVKQ--------GIMPT--- 79 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~--- 79 (319)
..+.|+++.|..++.++.... ..|+.. .|+.-. .....+ +++.|..++++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 457899999999999987643 222221 233333 334455 888888877776543 11222
Q ss_pred --hhhHHHHHHHHHHcCchh---HHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHH
Q 039029 80 --ASTYNLLIHELLMERKMV---EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154 (319)
Q Consensus 80 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (319)
..++..++.++...+..+ +|.++++.+...... .+..+..-+..+.+.++.+.+.+++.+|... +.-....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHH
Confidence 234566777777766644 456666666554332 4556666677888889999999999999986 222334555
Q ss_pred HHHHHH---hhhccHHHHHHHHHHHhhCCCCccHH-HHHH-HHH-H--HhcCCc------HHHHHHHHHHHHh-CCCCCC
Q 039029 155 SLIFVL---SKQNRMIEADQLFENFLAKGMLPDIV-MFNA-LID-G--HCTNGN------IERAFSLLKEMDR-MKVHPD 219 (319)
Q Consensus 155 ~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~-~--~~~~~~------~~~a~~~~~~~~~-~~~~~~ 219 (319)
.++..+ .... ...+...+..+....+.|... .... ++. . ..+.++ .+....++..+.+ .+.+.+
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555444 3333 345666666665554444443 1111 111 1 112211 4444455554332 222333
Q ss_pred hhhHHH---H----HHHHHcCCcHHHHHHHHHHHH
Q 039029 220 EVTYNT---L----MHGRCRQGKVEEARRLLDQMK 247 (319)
Q Consensus 220 ~~~~~~---l----~~~~~~~g~~~~a~~~~~~~~ 247 (319)
..+-.. + +..+.+.++++.|..+|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333222 2 234567899999999998654
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.43 E-value=0.34 Score=38.44 Aligned_cols=228 Identities=12% Similarity=0.013 Sum_probs=137.9
Q ss_pred HhccCChHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHH----HHc-CCCcChhhHHHHHHHHHH
Q 039029 20 MCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEM----VKQ-GIMPTASTYNLLIHELLM 92 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~ 92 (319)
+....+.++|+..|.+...+- ...-..++..+..+.++.|.+++++..--.- .+. ....-...|..+.+.+-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887766531 1112346677778888888888776542221 111 001123445556666666
Q ss_pred cCchhHHHHHHHHHhhC-CCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCccHHHHHHHHHHHhhh
Q 039029 93 ERKMVEADDMLKEMGEK-GIVP---DSITYNILINGYCRCGNAKKAFSLHDEMIHKG-----IQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 163 (319)
.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+...+.- ......++..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666655544332 2222 11234456777888888999999999877631 112235788888999999
Q ss_pred ccHHHHHHHHHHHhhC----CCCccH-HHH-----HHHHHHHhcCCcHHHHHHHHHHHHh----CCCCC-ChhhHHHHHH
Q 039029 164 NRMIEADQLFENFLAK----GMLPDI-VMF-----NALIDGHCTNGNIERAFSLLKEMDR----MKVHP-DEVTYNTLMH 228 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~----~~~~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 228 (319)
.+++++.-+..+..+. ++. |. .-| ..+.-++...|....|.+..++..+ .|-++ -......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999888776655432 222 21 112 2233445667777777777776543 33222 2334566788
Q ss_pred HHHcCCcHHHHHHHHHHHHH
Q 039029 229 GRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~ 248 (319)
.|...|+.+.|+.-|+.+..
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 99999999999888877543
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.41 E-value=0.21 Score=39.56 Aligned_cols=227 Identities=10% Similarity=-0.007 Sum_probs=133.2
Q ss_pred hcCChHHHHHHHHHHHHcC--CCcChhhHHHHHHHHHHcCchhHHHHH----HHHHhhCC-CCCChHHHHHHHHHHHhcC
Q 039029 57 NKGNLEMAFSFRDEMVKQG--IMPTASTYNLLIHELLMERKMVEADDM----LKEMGEKG-IVPDSITYNILINGYCRCG 129 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 129 (319)
...+.++|+..+...+..- ..--..++..+..+..+.|.+++++.. ++...+.. -..-...|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555544330 001122344445556666666655432 22222110 0012344555666666666
Q ss_pred ChHHHHHHHHHHHHc-CCCc---cHHHHHHHHHHHhhhccHHHHHHHHHHHhhC-----CCCccHHHHHHHHHHHhcCCc
Q 039029 130 NAKKAFSLHDEMIHK-GIQP---TMLTYTSLIFVLSKQNRMIEADQLFENFLAK-----GMLPDIVMFNALIDGHCTNGN 200 (319)
Q Consensus 130 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 200 (319)
++.+++.+-..-... |..| .......+..++...+.++.+++.|+...+. +......++-.|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666665554432 2222 1234455677788888899999999877653 112234678889999999999
Q ss_pred HHHHHHHHHHHHh----CCCCCChh-----hHHHHHHHHHcCCcHHHHHHHHHHHHHc----CCCCCCcccCcchhhHHH
Q 039029 201 IERAFSLLKEMDR----MKVHPDEV-----TYNTLMHGRCRQGKVEEARRLLDQMKRR----GIKPDHISFNPTRLTYNA 267 (319)
Q Consensus 201 ~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 267 (319)
+++|.-+..+..+ .++..-.. ....+.-++...|....|.+.-++..+. |-.+.. ......
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~------arc~~~ 251 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ------ARCLLC 251 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH------HHHHHH
Confidence 9998877766533 22221111 2234556778889988888888776553 333222 145567
Q ss_pred HHHHHHhcCchhHHHHHHHHHH
Q 039029 268 LIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 268 l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
+.+.|...|+.+.|..-|+...
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHH
Confidence 7888999999999887777653
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.3 Score=37.58 Aligned_cols=152 Identities=12% Similarity=-0.010 Sum_probs=97.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcH
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
.......|++.+|...|....... +-+...-..+..+|...|+.+.|..++..+...-..........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345667889999999999888874 3456777788889999999999999998876543222223322333444444444
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHH
Q 039029 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 281 (319)
.+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+++.+..... ...-..++..+.-.|.-+.+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d------~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED------GEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC------cHHHHHHHHHHHhcCCCCHH
Confidence 4444444444331 236666677888888999999999888777766433222 14556666666666644443
Q ss_pred H
Q 039029 282 E 282 (319)
Q Consensus 282 ~ 282 (319)
.
T Consensus 292 ~ 292 (304)
T COG3118 292 V 292 (304)
T ss_pred H
Confidence 3
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.31 Score=37.54 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=21.3
Q ss_pred HcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEM 141 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (319)
..|++.+|...|......... +...--.+..+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444443222 2333334444444444444444444444
No 238
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.37 E-value=0.054 Score=38.87 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchh
Q 039029 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD--EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263 (319)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 263 (319)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+.....++...-..+......+-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4455666666666776666666666665543333 22345556666666666666666666544322222111111112
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
+|..+. +...+++..|-+.|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 222222 344567777766665543
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.37 E-value=0.52 Score=39.92 Aligned_cols=157 Identities=14% Similarity=0.117 Sum_probs=102.5
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCCh------HHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCccHHHHHHH-HH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDS------ITYNILINGYCR----CGNAKKAFSLHDEMIHKGIQPTMLTYTSL-IF 158 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~ 158 (319)
..=.|+-+.+++.+.+..+.+--..+ -.|+..+..++. ..+.+.|.++++.+.++ -|+...|... .+
T Consensus 198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR 275 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGR 275 (468)
T ss_pred cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 34467888888888876654211122 233444444433 35678899999999887 4565555433 46
Q ss_pred HHhhhccHHHHHHHHHHHhhCC---CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCC
Q 039029 159 VLSKQNRMIEADQLFENFLAKG---MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG-RCRQG 234 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 234 (319)
.+...|++++|.+.|+...... .+.....+-.+.-.+.-..+|++|...|..+.+.. ..+..+|..+.-+ +...|
T Consensus 276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhc
Confidence 6778999999999999766421 11223344556667788899999999999998754 3344455444433 34567
Q ss_pred cH-------HHHHHHHHHHHHc
Q 039029 235 KV-------EEARRLLDQMKRR 249 (319)
Q Consensus 235 ~~-------~~a~~~~~~~~~~ 249 (319)
+. ++|.++|.++...
T Consensus 355 ~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 355 REEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cchhhhhhHHHHHHHHHHHHHH
Confidence 77 8888888887543
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.16 Score=33.85 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=46.0
Q ss_pred HHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhh---HHHHHHHHHHcCc
Q 039029 19 GMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST---YNLLIHELLMERK 95 (319)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 95 (319)
+++..|+.+.|++.|.+.... .+..+..||.-.+++.-.|+.++|++-+++.++..-..+... |..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445556666666666665553 223455666666666666666666666665555421212221 2222223444555
Q ss_pred hhHHHHHHHHHhhCC
Q 039029 96 MVEADDMLKEMGEKG 110 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~ 110 (319)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555544443
No 241
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.62 Score=40.67 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
-+.+--+.-+...|+..+|.++-.++. .||-..|-.-+.+++..+++++.+++-+... ++.-|.-+..+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444555667788888888776654 3688888888899999999998776654432 356688899999
Q ss_pred HcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
.+.|+.++|.+++-+... +.....+|.+.|++.+|.++.-+
T Consensus 755 ~~~~n~~EA~KYiprv~~----------------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG----------------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCC----------------hHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999887532 22567888999999888876543
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.29 Score=36.56 Aligned_cols=195 Identities=16% Similarity=0.125 Sum_probs=98.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC------hhhHHHHHHHHHHcCchhHHHHHHHHHh----hCCCCCChH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT------ASTYNLLIHELLMERKMVEADDMLKEMG----EKGIVPDSI 116 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ 116 (319)
.|.....+|...+++++|...+.+..+.. .-+ ...|...+...-....+.++..++++.. +.| .|++.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtA 110 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTA 110 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchH
Confidence 44445555666666666666555544210 111 1122222223333444555555555432 222 22322
Q ss_pred HHHH-HHHHHHhcCChHHHHHHHHHHHHc---C--CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC----CCCcc-H
Q 039029 117 TYNI-LINGYCRCGNAKKAFSLHDEMIHK---G--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK----GMLPD-I 185 (319)
Q Consensus 117 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~ 185 (319)
.... -..-....-++++|+++|++.... + ...-...+......+.+...+.++-..+.+-... .--++ -
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 2110 011123345677777777765442 1 0111234455556667777777766555432211 11112 2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHcCCcHHHHHHHHH
Q 039029 186 VMFNALIDGHCTNGNIERAFSLLKEMDRM---KVHPDEVTYNTLMHGRCRQGKVEEARRLLD 244 (319)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (319)
..|-..+-.|....++..|...++.-.+. .-+-+..+...|+.+| ..|+.+++..++.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 34555666677778999999999884332 2234566788888887 4678888776653
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.3 Score=36.50 Aligned_cols=207 Identities=15% Similarity=0.053 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
..|.....+|-..+++++|...+.+..+- .+.+...|. ....++.|--+.+++... +--...+......|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34445555565666666666655554421 121222221 122344455555555442 11234455555566
Q ss_pred hhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---C--CCCChhhHHHHHHHHHcCCc
Q 039029 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM---K--VHPDEVTYNTLMHGRCRQGK 235 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~ 235 (319)
...|.++.|-..+++.-+. ...-+++.|+.++++.... + .+--...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 6666666665555544322 2233445555555543221 0 01112234445566677777
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCC---CCCChHHHHHHHHHhhhcch
Q 039029 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG---ITPDDNTYFSLIEGIASVDK 312 (319)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~ 312 (319)
+++|...+.+-.......+.. +.--..|-..|-.+....|+..|...+++-.+.+ -.-+..+...|+.+|-. |+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y--~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD 242 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAY--NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GD 242 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhc--ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CC
Confidence 887777665543221111110 0011345566667778889999999998855542 12356677788887754 55
Q ss_pred hhhh
Q 039029 313 AAES 316 (319)
Q Consensus 313 ~~~A 316 (319)
.|++
T Consensus 243 ~E~~ 246 (308)
T KOG1585|consen 243 IEEI 246 (308)
T ss_pred HHHH
Confidence 5554
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.29 E-value=0.53 Score=39.16 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhh
Q 039029 186 VMFNALIDGHCTNGNIERAFSLLKEMDRMKVH-PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264 (319)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (319)
.+-..+..++.+.|+.++|.+.++++.+.... ........|+..+...+.+.++..++.+.-+.. .|... ..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSA-----ti~ 333 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSA-----TIC 333 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchH-----HHH
Confidence 33345666777889999999999988654311 234466778888999999999999888864332 22221 156
Q ss_pred HHHHHHHHHhcCc
Q 039029 265 YNALIQGLCKNQE 277 (319)
Q Consensus 265 ~~~l~~~~~~~g~ 277 (319)
|+..+-.+...++
T Consensus 334 YTaALLkaRav~d 346 (539)
T PF04184_consen 334 YTAALLKARAVGD 346 (539)
T ss_pred HHHHHHHHHhhcc
Confidence 6665544443333
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.27 E-value=0.064 Score=40.78 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=49.7
Q ss_pred CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHHcCCCccHHHHHHHH
Q 039029 94 RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG----------------NAKKAFSLHDEMIHKGIQPTMLTYTSLI 157 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (319)
+.++-....++.|.+.|+.-|..+|+.|++.+-+-. +-+-++.++++|...|+-||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344445555666666666666677766666543321 2345788889999999999999988899
Q ss_pred HHHhhhcc
Q 039029 158 FVLSKQNR 165 (319)
Q Consensus 158 ~~~~~~~~ 165 (319)
.++.+.+-
T Consensus 166 n~FGr~~~ 173 (406)
T KOG3941|consen 166 NAFGRWNF 173 (406)
T ss_pred HHhccccc
Confidence 88887664
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.27 E-value=0.33 Score=36.58 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=39.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 55 YCNKGNLEMAFSFRDEMVKQGI--MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
-.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.++++.|+..+++.....+......|..-|.++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3466777777777777765421 1223444555566667777777777777766554333333344334433
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.21 E-value=0.2 Score=33.47 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 039029 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 251 (319)
.......+......|.-++..+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++.+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344445555666666666666666655422 45556666666666666666666666666666654
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.81 Score=40.55 Aligned_cols=213 Identities=18% Similarity=0.173 Sum_probs=130.2
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT--AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
....-+..+.+..-++-|+.+-+.- +..++ .........-+.+.|++++|...|-+.+.. +.| ..++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3455667777777777777766442 22222 223445555667789999999888776643 122 234555
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
|...........+++.+.+.|.. +...-..|+.+|.+.++.++..+..+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 67777788888889999998876 77788889999999999988777766544 2211 11244556666777777777
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
..+-..... +......++ -..+++++|.+.+..+.-.. -..+.+.....+. ...+++...++-+....
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~~e---~l~~l~kyGk~Ll-~h~P~~t~~ili~~~t~ 550 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPISE---LLRTLNKYGKILL-EHDPEETMKILIELITE 550 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCHHH---HHHHHHHHHHHHH-hhChHHHHHHHHHHHhh
Confidence 666555433 334444444 34678888888877652110 1112222222222 23556666666555544
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.10 E-value=0.03 Score=29.46 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC-ChHHHHHH
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITP-DDNTYFSL 303 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 303 (319)
.+|..+...|.+.|++++|.++++++++. .| |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 46788999999999999999999999986 45 44455444
No 250
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.08 E-value=0.52 Score=37.09 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHH
Q 039029 28 EASRMLEQMKENGLVPTAVTYNT 50 (319)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~ 50 (319)
+.+.+++.+.+.|...+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34455555555555555444433
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.06 E-value=0.24 Score=33.07 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=24.6
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
...+..+...|.-+...+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444444444444444444331 22344444444444555555555555554444444
No 252
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.03 E-value=0.47 Score=36.35 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHH
Q 039029 113 PDSITYNILINGYCRC-----GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM 187 (319)
Q Consensus 113 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (319)
-|-.+|...+..+... +..+-....++.|.+.|+.-|..+|..|+..+-+.. +.|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-H
Confidence 3566666666655432 445555666677777777777777777776543211 11111 1
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 039029 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (319)
+....-.|- .+-+-+..++++|...|+.||..+-..++.++.+.+-
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1223456677777777777777776667776665553
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.00 E-value=0.037 Score=29.10 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.44 Score=42.07 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=106.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT--ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (319)
....-+..+.+...++.|+.+-+. .+..++ ..........+.+.|++++|...|-+-... +.| ..++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 344556666677777777766543 222222 223344445566778888888777666543 222 224555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHH
Q 039029 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (319)
|.......+-..+++.+.+.|+. +...-+.|+.+|.+.++.+...++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 56666677777778888887753 56666777888888888877776666543 2211 11133455666666777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
..+-.+... .......+ +-..+++++|.+++..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 666554432 22223333 34567888888887764
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.85 E-value=0.65 Score=36.33 Aligned_cols=229 Identities=16% Similarity=0.077 Sum_probs=126.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcChhhHHHH-------HHHHHHcC-chhHHHHHHHHHhhC--------CCCCC----
Q 039029 55 YCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL-------IHELLMER-KMVEADDMLKEMGEK--------GIVPD---- 114 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 114 (319)
..+.|+.+.|..++.+........++.....+ .......+ +++.|..++++..+. ...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999988764312222222222 23334556 888888777765432 11222
Q ss_pred -hHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHH
Q 039029 115 -SITYNILINGYCRCGNAK---KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190 (319)
Q Consensus 115 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (319)
..++..++.+|...+..+ +|.++++.+... .+..+.++..-+..+.+.++.+.+.+.+.+|+..-.. ....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 245667788888887765 455566666444 2333566666677777789999999999999987322 2233444
Q ss_pred HHHHH---hcCCcHHHHHHHHHHHHhCCCCCChh-hHHHHH--HHH--HcCC------cHHHHHHHHHHHHHcCCCCCCc
Q 039029 191 LIDGH---CTNGNIERAFSLLKEMDRMKVHPDEV-TYNTLM--HGR--CRQG------KVEEARRLLDQMKRRGIKPDHI 256 (319)
Q Consensus 191 l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~--~~~--~~~g------~~~~a~~~~~~~~~~~~~~~~~ 256 (319)
.+..+ .... ...+...+..+......|... ....++ ..+ .+.+ ..+....+++.+.+....|-..
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44443 3333 345555665554444444443 111111 111 1211 1455555566444332222221
Q ss_pred ccCcchhhHHHH----HHHHHhcCchhHHHHHHHHHH
Q 039029 257 SFNPTRLTYNAL----IQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 257 ~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~ 289 (319)
+...+..++ +..+.+.++++.|.+.|+-..
T Consensus 240 ---~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 ---EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 111222233 233567899999999988544
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.74 E-value=0.23 Score=38.23 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=61.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhh-----CCCCccHHHH
Q 039029 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-----KGMLPDIVMF 188 (319)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 188 (319)
-..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34567777888888888888888888888774 56777888888888888888888888877665 3777777777
Q ss_pred HHHHHH
Q 039029 189 NALIDG 194 (319)
Q Consensus 189 ~~l~~~ 194 (319)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666665
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.73 E-value=0.029 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999654
No 258
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.65 E-value=0.91 Score=36.59 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=146.3
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHHHHHcCCCcChhhHHHHHH--HHHHcCchhHHHHHHHHHhhCCCCCChHH--HHHH
Q 039029 48 YNTLIDGYCN--KGNLEMAFSFRDEMVKQGIMPTASTYNLLIH--ELLMERKMVEADDMLKEMGEKGIVPDSIT--YNIL 121 (319)
Q Consensus 48 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 121 (319)
|..|-.++.- .|+-..|.++-.+..+. +..|......++. .-.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444433 46666776666554422 1223333444443 344579999999999999864 22222 2333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC-CCccHH--HHHHHHHHHh--
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-MLPDIV--MFNALIDGHC-- 196 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~-- 196 (319)
.-...+.|+.+.|..+-+.....- +--.......+...+..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 444467788999988888877652 3345678888899999999999999998765542 233321 2223333211
Q ss_pred -cCCcHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHh
Q 039029 197 -TNGNIERAFSLLKEMDRMKVHPDEVT-YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK 274 (319)
Q Consensus 197 -~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (319)
-.-+...|.+.-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+...+|+. ...|.+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i-------------a~lY~~ 304 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI-------------ALLYVR 304 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH-------------HHHHHH
Confidence 12356666666666555 3566443 233457889999999999999999886555432 233444
Q ss_pred cCchhHHHHHHHHHHhC-CCCC-ChHHHHHHHHHhhhcchhhh
Q 039029 275 NQEGDLAEELLREMVSK-GITP-DDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 275 ~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 315 (319)
...-+.++.-+++.... .++| +......+.++-...|++..
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence 44444455555544432 2344 34445555555555555543
No 259
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.59 E-value=0.51 Score=33.31 Aligned_cols=135 Identities=12% Similarity=0.135 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC
Q 039029 30 SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.+.+..+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+ .+....+.++=-.|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 445555666778888888888888888888766554444 334444444443333222 12223333333333322
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q 039029 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178 (319)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.++...-..+++....
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113455667777888888888877665322 112224455666666666655555555444
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.59 E-value=0.37 Score=32.15 Aligned_cols=91 Identities=12% Similarity=0.014 Sum_probs=51.8
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH---HHHHHHHHHHhhhcc
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM---LTYTSLIFVLSKQNR 165 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 165 (319)
++...|+.+.|++.|.+....-++ ....||.-..++.-.|+.++|++=+++..+..-+-+. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566777777777666655333 5666676666776677777776666666654211111 223333344555666
Q ss_pred HHHHHHHHHHHhhCC
Q 039029 166 MIEADQLFENFLAKG 180 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~ 180 (319)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555544
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.55 E-value=0.47 Score=32.59 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=18.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 039029 51 LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33344444444444444444444431 334444444444443
No 262
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.53 E-value=1.4 Score=38.03 Aligned_cols=209 Identities=16% Similarity=0.188 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHH-----HHHHHHHHcCchhHHHHH
Q 039029 28 EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN-----LLIHELLMERKMVEADDM 102 (319)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~ 102 (319)
+.+.-+++++++|-.|+.. .+...|+-.|++.+|-++|.+--..+ .-.+.|+ .+.+-+...|..++-..+
T Consensus 618 ~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 3334445566677667664 34455677888888888886532221 0111111 112223334444433333
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH------HHHcCC---CccHHHHHHHHHHHhhhccHHHHHHHH
Q 039029 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE------MIHKGI---QPTMLTYTSLIFVLSKQNRMIEADQLF 173 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (319)
.++-.+.. -+..--.+....+...|+.++|..+.-+ +.+-+. ..+..+...+..-+.+...+..|-++|
T Consensus 693 ~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF 770 (1081)
T KOG1538|consen 693 IRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIF 770 (1081)
T ss_pred HHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHH
Confidence 33222110 0111112334556677877777665421 112111 123344445445555666777788888
Q ss_pred HHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh-----------hHHHHHHHHHcCCcHHHHHHH
Q 039029 174 ENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV-----------TYNTLMHGRCRQGKVEEARRL 242 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~ 242 (319)
..+-+. ..++......++|++|..+-+...+. .||+. -|...-.+|.+.|+-.+|..+
T Consensus 771 ~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~v 839 (1081)
T KOG1538|consen 771 LKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQV 839 (1081)
T ss_pred HHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHH
Confidence 776432 34667788899999999998877654 33332 133344678888999999999
Q ss_pred HHHHHHcCCCCC
Q 039029 243 LDQMKRRGIKPD 254 (319)
Q Consensus 243 ~~~~~~~~~~~~ 254 (319)
++++....+..+
T Consensus 840 LeQLtnnav~E~ 851 (1081)
T KOG1538|consen 840 LEQLTNNAVAES 851 (1081)
T ss_pred HHHhhhhhhhhh
Confidence 988876544433
No 263
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.4 Score=37.25 Aligned_cols=98 Identities=20% Similarity=0.171 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHH
Q 039029 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKG---IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190 (319)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (319)
...+...++..-....+++.+...+-++...- ..|+. +-..+++.+. .-++..++.++..=+..|+-||-.+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 34444444544445556666666666554321 11111 1122222222 2344566666666666677777777777
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHh
Q 039029 191 LIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+++.+.+.+++..|..+...|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777776666666544
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.41 E-value=0.05 Score=27.11 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=21.2
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 222 TYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
++..|...|.+.|++++|.+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788889999999999999988553
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=95.39 E-value=1.3 Score=36.71 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHhhC-CCCC-ChHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc
Q 039029 96 MVEADDMLKEMGEK-GIVP-DSITYNILINGYCR---------CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164 (319)
Q Consensus 96 ~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
.+.|..+|.+.... ...| ....|..+..++.. ..+..+|.+.-+...+.+ +.|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677777777721 1222 24444444333322 123456667777777765 567777777777777778
Q ss_pred cHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHcCCcHHHHHH
Q 039029 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV---TYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~ 241 (319)
+++.+...|++....++. ...+|........-.|+.++|.+.+++..+. .|... .....+..|+.. ..+.|.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 888888888888876433 3455555555566788888888888886664 33322 222233355443 4666666
Q ss_pred HHHH
Q 039029 242 LLDQ 245 (319)
Q Consensus 242 ~~~~ 245 (319)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6644
No 266
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.38 E-value=0.0022 Score=44.33 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=52.7
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 039029 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (319)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34555566677777777777776555556777777778887777666666666521 11233456677777777
Q ss_pred HHHHHHHHHHH
Q 039029 236 VEEARRLLDQM 246 (319)
Q Consensus 236 ~~~a~~~~~~~ 246 (319)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777777664
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.34 E-value=0.36 Score=37.24 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHh-----CCCCCChhhHH
Q 039029 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR-----MKVHPDEVTYN 224 (319)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 224 (319)
..++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 457888889999999999999999999988654 788999999999999999999999998744 68889988888
Q ss_pred HHHHHHH
Q 039029 225 TLMHGRC 231 (319)
Q Consensus 225 ~l~~~~~ 231 (319)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7777743
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.26 E-value=1.4 Score=36.31 Aligned_cols=145 Identities=16% Similarity=0.295 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhCC-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEKG-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
.+|...+....+..-.+.|..+|-+..+.+ +.+++..+++++..++ .|+..-|..+|+--... ++.+...-...+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 345556666666777888888888888877 5667777888887665 47778888888765554 23333444455566
Q ss_pred HhhhccHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 160 LSKQNRMIEADQLFENFLAKGMLPD--IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
+...++-..|..+|+..+.. +..+ ...|..++..-...|+...+..+-+++.+. .|-..+...+..-|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 67778888888888855433 1112 457888888878888888777777777653 34443333343333
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.18 E-value=0.79 Score=32.98 Aligned_cols=96 Identities=15% Similarity=0.015 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC-hhhHH--H-
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD--IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD-EVTYN--T- 225 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--~- 225 (319)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+...+.++...-..+. ...-+ .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 344555555566666666666665555433322 23344455555555666655555555433211111 11111 1
Q ss_pred -HHHHHHcCCcHHHHHHHHHHHH
Q 039029 226 -LMHGRCRQGKVEEARRLLDQMK 247 (319)
Q Consensus 226 -l~~~~~~~g~~~~a~~~~~~~~ 247 (319)
-.-.+...|++..|.+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 1122345677888777776654
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.14 E-value=1.4 Score=35.71 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=34.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
.+.+.-+.|+|+...+........ .++...+..+... ..++++++...++.....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 356777889998855555544432 1344445544433 788888888887777653
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.08 E-value=1 Score=33.63 Aligned_cols=224 Identities=21% Similarity=0.103 Sum_probs=156.4
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcChhhHHHHHHHHHHcCchhHHHH
Q 039029 24 GRLEEASRMLEQMKENGLVP-TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIMPTASTYNLLIHELLMERKMVEADD 101 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45566666666665543221 3567777888888899999999888887752 224455667777777888888999999
Q ss_pred HHHHHhhCCCCCChHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CccHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q 039029 102 MLKEMGEKGIVPDSITYNILIN-GYCRCGNAKKAFSLHDEMIHKGI--QPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178 (319)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 999988754442 222333333 78899999999999999865321 12334444444456778899999999998887
Q ss_pred CCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 179 KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
.........+..+...+...++++.+...+....... |+ ...+..+...+...+..+.+...+.+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6332135677788888888889999999999887753 33 3444555555557777999999998887753
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.05 E-value=0.76 Score=32.08 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=41.1
Q ss_pred hhhccHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHH
Q 039029 161 SKQNRMIEADQLFENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (319)
.+.++.+++..++..+.-..+. |...++. ...+...|++.+|..+|+++.+.. |....-..|+..|....+-..-
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 3455666666666665544221 1122222 233456667777777777765532 3333334444444443333333
Q ss_pred HHHHHHHHHcC
Q 039029 240 RRLLDQMKRRG 250 (319)
Q Consensus 240 ~~~~~~~~~~~ 250 (319)
..+-.++.+.+
T Consensus 97 r~~A~evle~~ 107 (160)
T PF09613_consen 97 RRYADEVLESG 107 (160)
T ss_pred HHHHHHHHhcC
Confidence 33344444443
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=1.3 Score=34.90 Aligned_cols=160 Identities=13% Similarity=0.011 Sum_probs=112.7
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCccHHHHHHHHHHHhhhccH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK---GIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
....|++.+|-..++++.+.-+ .|...+...=.+|.-.|+...-...++++... ++|-.+..-....-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456888888888999988644 48888888888999999999988888888765 3333334444455566789999
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD---EVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
++|++.-++..+.+.. |...-.+........|++.++.++..+-...=-..+ ..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999988877543 666667777788888999999988776543210000 112233344456678999999999
Q ss_pred HHHHHcCC
Q 039029 244 DQMKRRGI 251 (319)
Q Consensus 244 ~~~~~~~~ 251 (319)
++-+-...
T Consensus 271 D~ei~k~l 278 (491)
T KOG2610|consen 271 DREIWKRL 278 (491)
T ss_pred HHHHHHHh
Confidence 87544333
No 274
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.93 Score=35.37 Aligned_cols=104 Identities=21% Similarity=0.254 Sum_probs=74.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChH
Q 039029 40 GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG---IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI 116 (319)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (319)
|.+.++.+...++..-....+++.++..+-.++... ..|+...+ ..++.+. .-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444455556666666666778888988887776541 22222222 2233332 346778998888888999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
+++.+|+.+.+.+++.+|.++.-.|..+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887764
No 275
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.87 E-value=3.3 Score=38.57 Aligned_cols=114 Identities=19% Similarity=0.170 Sum_probs=63.2
Q ss_pred CccHHHHHHHH----HHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh-
Q 039029 147 QPTMLTYTSLI----FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV- 221 (319)
Q Consensus 147 ~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 221 (319)
.|+...+..+. ..+.....+++|.-.|+..-+ ....+.+|..+|+|.+|..+..++... .+..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 34544444333 334455566666655554322 223466677778888887777766431 1222
Q ss_pred -hHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 222 -TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 222 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
+-..|+.-+...+++-+|.++..+.... ....+..|++...|++|.++...
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD---------------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC---------------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 2255667777788888887777776542 12334445555556666555443
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.87 E-value=0.79 Score=31.32 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI--MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
..+-.-.....+.|++++|.+.|+.+...-+ +-...+-..++.++.+.+++++|...++++++..+...-..|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3344445556789999999999999988721 22345667788999999999999999999998866544455555555
Q ss_pred HHHh
Q 039029 124 GYCR 127 (319)
Q Consensus 124 ~~~~ 127 (319)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5443
No 277
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.82 E-value=1.4 Score=34.06 Aligned_cols=138 Identities=9% Similarity=0.075 Sum_probs=79.3
Q ss_pred cCChHHHHHHHHHHHH-cCCCcChhhHHHHHHHHHH-cC-chhHHHHHHHHHhh-CCCCCChHHHHHHHHHHHhcCChHH
Q 039029 58 KGNLEMAFSFRDEMVK-QGIMPTASTYNLLIHELLM-ER-KMVEADDMLKEMGE-KGIVPDSITYNILINGYCRCGNAKK 133 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (319)
.....+|+++|+..-. ..+-.|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++..++|.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345566666663222 2233466666666666554 22 12222233333322 2345566777777788888888888
Q ss_pred HHHHHHHHHHc-CCCccHHHHHHHHHHHhhhccHHHHHHHHHH-----HhhCCCCccHHHHHHHHHHH
Q 039029 134 AFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFEN-----FLAKGMLPDIVMFNALIDGH 195 (319)
Q Consensus 134 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 195 (319)
..++++..... +...|...|..+++.....|+..-..++..+ +.+.++..+...-.++-+.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 88877776655 4455667788888888888887776666653 23345555555544444443
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=1.1 Score=31.69 Aligned_cols=139 Identities=12% Similarity=0.059 Sum_probs=83.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChh-hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChH-HHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS-TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI-TYNIL 121 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 121 (319)
+...|...++. .+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44455555543 45667778888888877765442111 11222334566778888888888876654444332 11112
Q ss_pred --HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc
Q 039029 122 --INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP 183 (319)
Q Consensus 122 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (319)
.-.+...|.++++..-.+.+...+-+.....-..|.-+-.+.|++..|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22345677788877777776665544445556666667777888888888888776653333
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.44 E-value=0.11 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 47889999999999999999999999874
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.34 E-value=1.2 Score=31.13 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 039029 55 YCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~ 74 (319)
+...|++.+|..+|+++...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 34455555555555554433
No 281
>PRK11906 transcriptional regulator; Provisional
Probab=94.23 E-value=2.8 Score=34.91 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=106.9
Q ss_pred HhH--HHHHHHHHhcC-----ChHHHHHHHHHHHHc-CCCcC-hhhHHHHHHHHHH---------cCchhHHHHHHHHHh
Q 039029 46 VTY--NTLIDGYCNKG-----NLEMAFSFRDEMVKQ-GIMPT-ASTYNLLIHELLM---------ERKMVEADDMLKEMG 107 (319)
Q Consensus 46 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 107 (319)
..| ..++++..... ..+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55666555422 356788889998832 12333 4555555544432 223556777777778
Q ss_pred hCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCcc-HH
Q 039029 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD-IV 186 (319)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 186 (319)
+.+.. |+.....+..+....++++.+...|++....+ |....++......+.-.|+.++|.+.+++..+..+.-- ..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77655 88888888888888899999999999998874 44456676666777788999999999999777632211 22
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHH
Q 039029 187 MFNALIDGHCTNGNIERAFSLLKE 210 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
.....+..|+.++ .+.+..++-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 2333444666554 5667776654
No 282
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.22 E-value=2.7 Score=34.77 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHhhCC-CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhH-HHHH
Q 039029 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKG-MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY-NTLM 227 (319)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 227 (319)
..+|...+....+..-++.|..+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+--... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3566777777778888899999999998887 5567788888888765 56777888888864432 3454444 4566
Q ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 039029 228 HGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306 (319)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (319)
..+...++-+.|..+|+..+..- ..+. -...|..++.--..-|+...+..+=++|... -|-..+......-
T Consensus 474 ~fLi~inde~naraLFetsv~r~-~~~q-----~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sr 544 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL-EKTQ-----LKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSR 544 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH-HHhh-----hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHH
Confidence 67778889999999998554321 1010 0157888888888889998888888888764 4444443333333
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.19 E-value=0.094 Score=25.72 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=10.5
Q ss_pred ChHHHHHHHHHHHhcCChHHH
Q 039029 114 DSITYNILINGYCRCGNAKKA 134 (319)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a 134 (319)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555444
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.13 E-value=1.4 Score=31.19 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=95.3
Q ss_pred ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHH-HHHHH
Q 039029 79 TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI-TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML-TYTSL 156 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 156 (319)
+...|...+. +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -...+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445555444 457788999999999998876552222 22233456778899999999999987754333322 12222
Q ss_pred --HHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCC
Q 039029 157 --IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218 (319)
Q Consensus 157 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (319)
.-.+...|.++....-.+-+-..+-+.-...-..|.-+-.+.|++.+|...|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 23456789999998888877766555455566677778889999999999999987643333
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.07 E-value=2.4 Score=33.51 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CccHHHHHHHHHHHhhhcc-
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCR--CG----NAKKAFSLHDEMIHKGI---QPTMLTYTSLIFVLSKQNR- 165 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 165 (319)
++....+++.+.+.|+.-+..+|-+....... .. ...++..+|+.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887777666553333332 22 24568888888887631 2333455555433 2233
Q ss_pred ---HHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHhcCCc--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 039029 166 ---MIEADQLFENFLAKGMLPD--IVMFNALIDGHCTNGN--IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235 (319)
Q Consensus 166 ---~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (319)
.+.++.+|+.+.+.|+..+ ....+.++..+..... ..++.++++.+.+.++++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 3456777777777666544 3344444444333332 44788888999998988887777766554443333
No 286
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.06 E-value=1.8 Score=32.18 Aligned_cols=224 Identities=20% Similarity=0.071 Sum_probs=158.6
Q ss_pred cCChHHHHHHHHHHHHcCCC-cChhhHHHHHHHHHHcCchhHHHHHHHHHhhC-CCCCChHHHHHHHHHHHhcCChHHHH
Q 039029 58 KGNLEMAFSFRDEMVKQGIM-PTASTYNLLIHELLMERKMVEADDMLKEMGEK-GIVPDSITYNILINGYCRCGNAKKAF 135 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (319)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666655322 13566777788888899999999888887752 23346667777888888889999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHH-HHhhhccHHHHHHHHHHHhhCCC--CccHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 039029 136 SLHDEMIHKGIQPTMLTYTSLIF-VLSKQNRMIEADQLFENFLAKGM--LPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212 (319)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988754332 222333333 78899999999999999866322 1233444444555677889999999999988
Q ss_pred hCCCCC-ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 213 RMKVHP-DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 213 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
... .. ....+..+...+...++++.+...+......... . ...+..+...+...+..+.+...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--N------AEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--c------HHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 753 23 3667788888899999999999999998875322 1 134455555555777899999999888775
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.00 E-value=1.5 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=12.2
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 71 MVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.+.+++|+...+..++..+.+.|++
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33344444444444555555444443
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.81 E-value=1 Score=28.53 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039029 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
+..+-++.+......|++.+..+.+++|.+.+++..|.++|+.++..- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666666777777777777777777777777777777765431 222225555443
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.71 E-value=0.18 Score=25.77 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5789999999999999999999999876
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.58 E-value=0.22 Score=24.04 Aligned_cols=29 Identities=14% Similarity=0.013 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
..|..+...+...|++++|++.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999875
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.49 E-value=4 Score=34.29 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+-..+..++-+.|+.++|.+.+.++.+..... .......|+.++...+.+.++..++.+..+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444455556666666666666666543221 223445566666666666666666666543
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.40 E-value=2.4 Score=31.37 Aligned_cols=177 Identities=15% Similarity=0.003 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 039029 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (319)
+.-|.--|.+..... |.-+.+||.+.-.+...|+++.|.+.|+...+..+.-+-...|.-+ ++.-.|+++-|.+=+.+
T Consensus 81 ~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 81 RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHH
Confidence 333333344444332 2235678888888889999999999999998875443322333222 23345788888877777
Q ss_pred HHHcCCCccH--HHHHHHHHHHhhhccHHHHHH-HHHHHhhCCCCccHHHHHHHH-HHHhcCCcHHHHHHHHHHHHhCCC
Q 039029 141 MIHKGIQPTM--LTYTSLIFVLSKQNRMIEADQ-LFENFLAKGMLPDIVMFNALI-DGHCTNGNIERAFSLLKEMDRMKV 216 (319)
Q Consensus 141 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~ 216 (319)
.-+.+ +.|+ ..|.-+. .+.-++.+|.. +.++.... |..-|...+ ..|. |++. ...+++++....-
T Consensus 159 fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL--gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 159 FYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL--GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH--hhcc-HHHHHHHHHhhcc
Confidence 66653 2222 2222222 23334555544 33444433 444444333 2222 2221 1233444433211
Q ss_pred C------CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 217 H------PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 217 ~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
. .=..+|-.+...+...|+.++|..+|+-.+..+
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0 113467778888999999999999999988764
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.36 E-value=0.13 Score=25.26 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=10.8
Q ss_pred CHHhHHHHHHHHHhcCChHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMA 64 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a 64 (319)
+..+|+.+...+...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
No 294
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.34 E-value=1.6 Score=31.81 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=46.3
Q ss_pred hcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhc
Q 039029 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275 (319)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (319)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.++.+.. .++. .+|+..+..|+..+.+.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~-~~~~---~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS-NPDD---NFNPEILKSLASIYQKL 191 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHHHh
Confidence 44454 446666666665554444444444444444 456777777777766643 2221 24556677777777777
Q ss_pred CchhHHH
Q 039029 276 QEGDLAE 282 (319)
Q Consensus 276 g~~~~A~ 282 (319)
|+++.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 7776653
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.30 E-value=0.28 Score=23.66 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=17.5
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 222 TYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
.+..+...+...|++++|.+.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455666666777777777777766653
No 296
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.26 E-value=0.2 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=23.5
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCC
Q 039029 267 ALIQGLCKNQEGDLAEELLREMVSKG 292 (319)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 292 (319)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999999764
No 297
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=93.23 E-value=2.2 Score=32.80 Aligned_cols=91 Identities=10% Similarity=-0.033 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHH-
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC- 126 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 126 (319)
...-|++++..+++.+++.+.-+.-+.--+....+...-|-.|.+.+++..+.++-.......-.-+...|..++..|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3445677788888887776655554432122233444455567788888877777776665422223334655554443
Q ss_pred ----hcCChHHHHHHH
Q 039029 127 ----RCGNAKKAFSLH 138 (319)
Q Consensus 127 ----~~~~~~~a~~~~ 138 (319)
-.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 458888887776
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.09 E-value=0.4 Score=23.20 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVK 73 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
+|..+..++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555444
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.90 E-value=2.1 Score=31.25 Aligned_cols=79 Identities=15% Similarity=0.041 Sum_probs=52.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC---CCCccHHHHHHHHHHHhcCCcH
Q 039029 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK---GMLPDIVMFNALIDGHCTNGNI 201 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
+.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+..+. +-.+|+..+..|...+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444444 567777777776664445555555555554 56677777777776654 3356778888888888888888
Q ss_pred HHHH
Q 039029 202 ERAF 205 (319)
Q Consensus 202 ~~a~ 205 (319)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 300
>PRK09687 putative lyase; Provisional
Probab=92.82 E-value=3.8 Score=32.12 Aligned_cols=235 Identities=13% Similarity=0.045 Sum_probs=148.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch----hHHHHHHHHHhhCCCCCChHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM----VEADDMLKEMGEKGIVPDSITY 118 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 118 (319)
++..+....+..+...|.. .+...+..+... ++...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 5666777777777777653 344444444433 3556666677777777764 4577777776443 2465666
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 039029 119 NILINGYCRCGNA-----KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193 (319)
Q Consensus 119 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+. ++..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5566666555421 233344333332 34667777778888888774 566666666653 35555555566
Q ss_pred HHhcCC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHH
Q 039029 194 GHCTNG-NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272 (319)
Q Consensus 194 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (319)
++.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+ ..+...+-...+.+. .....+.++
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~------------~~~~a~~AL 245 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT------------VGDLIIEAA 245 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc------------hHHHHHHHH
Confidence 666543 24456666666664 4577777888888888888 456666666655431 234678888
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhh
Q 039029 273 CKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309 (319)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (319)
...|+. +|...+..+... .||..+-...+.+|.+
T Consensus 246 g~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 888886 688888888874 4688887777777654
No 301
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.80 E-value=1.5 Score=27.53 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
+.-++.+-++.+......|++.+..+.+++|.+.+++..|.++++-++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445566666666666677777777777777777777777777776653
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.52 E-value=3.3 Score=30.67 Aligned_cols=187 Identities=14% Similarity=0.015 Sum_probs=106.0
Q ss_pred cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHH
Q 039029 93 ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
.|-+.-|.-=|.+.....+. -+.+||-+.--+...|+++.|.+.|+...+.+.. ...+...-.-++.-.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHH
Confidence 34455555555555544333 4678888888889999999999999999887522 223333323334456888888776
Q ss_pred HHHHhhCCCC-ccHHHHHHHHHHHhcCCcHHHHHHHH-HHHHhCCCCCChhhHHHHHH-HHHcCCcHHHHHHHHHHHHHc
Q 039029 173 FENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLL-KEMDRMKVHPDEVTYNTLMH-GRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 173 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~ 249 (319)
+...-..+.. |-...|.-+.. ..-++.+|..-+ ++... .|..-|...+- .|...=..+ .+++++...
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH---HHHHHHHhh
Confidence 6666555332 22333433332 334566665443 34443 34455554443 333222222 223333221
Q ss_pred CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 039029 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292 (319)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 292 (319)
. ..+..--..-..||--+...+...|+.++|..+|+-.+..+
T Consensus 226 a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 A-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 10000000112578888999999999999999999888753
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.40 E-value=0.48 Score=24.13 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3555666666666666666666665543
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=3.8 Score=35.31 Aligned_cols=99 Identities=19% Similarity=0.101 Sum_probs=57.8
Q ss_pred hhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHH
Q 039029 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (319)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 35666777666654432 455677777777777777777777766554 234555555566655555
Q ss_pred HHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
.+-....+.|. .|...-+|...|+++++.+++..
T Consensus 713 ~la~~~~~~g~-------------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGK-------------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhcc-------------cchHHHHHHHcCCHHHHHHHHHh
Confidence 55555544442 23334455566666666666543
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.34 E-value=2.6 Score=35.19 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=48.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
..+...|+++.+...+...... +.....+...+++...+.|++++|...-.-|....+. ++.............|-++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 3455566666666666554433 2234445566666666666666666666666555443 3333333333333445566
Q ss_pred HHHHHHHHHHhC
Q 039029 203 RAFSLLKEMDRM 214 (319)
Q Consensus 203 ~a~~~~~~~~~~ 214 (319)
++...|+++...
T Consensus 409 ~~~~~wk~~~~~ 420 (831)
T PRK15180 409 KSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHhcc
Confidence 666666655443
No 306
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.32 E-value=6.1 Score=33.24 Aligned_cols=294 Identities=13% Similarity=0.084 Sum_probs=151.9
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHH--HHHHHHHHHHcCCCc----------
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEM--AFSFRDEMVKQGIMP---------- 78 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~---------- 78 (319)
.........-...+.++..+++++.+...|.......++.....|.+.|.... -++-+..+...-..|
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~ 97 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLK 97 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhh
Confidence 33333344445678899999999999998877777778887878888775432 222233332211111
Q ss_pred -ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCCh-----HHHHHHHHHHHhcCChHHHHHHH---HHHHHcC----
Q 039029 79 -TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS-----ITYNILINGYCRCGNAKKAFSLH---DEMIHKG---- 145 (319)
Q Consensus 79 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~---- 145 (319)
....+......|.....+..|.++...+... .+|=. .........+......++|+.++ .++...+
T Consensus 98 ~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~ 176 (696)
T KOG2471|consen 98 QGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL 176 (696)
T ss_pred cchHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 1112222222334445556666555444332 01000 01111223344444555555544 4443321
Q ss_pred -------------CCccHHHHHHH------------HHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHH-HHHHhcCC
Q 039029 146 -------------IQPTMLTYTSL------------IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL-IDGHCTNG 199 (319)
Q Consensus 146 -------------~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 199 (319)
.+|....-..+ +.++....++..+..-.+..... .-|...+..| -..+.-.|
T Consensus 177 ~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~--a~~s~~~l~LKsq~eY~~g 254 (696)
T KOG2471|consen 177 VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI--AQDSSMALLLKSQLEYAHG 254 (696)
T ss_pred cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh--cCCCcHHHHHHHHHHHHhc
Confidence 01111111111 12222222222222222211111 1122112211 23345679
Q ss_pred cHHHHHHHHHHHHh---CCCCCC-----hhhHHHHHHHHHcCCcHHHHHHHHHHHHH-------cCCCCCCcc-c--Cc-
Q 039029 200 NIERAFSLLKEMDR---MKVHPD-----EVTYNTLMHGRCRQGKVEEARRLLDQMKR-------RGIKPDHIS-F--NP- 260 (319)
Q Consensus 200 ~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~-~--~~- 260 (319)
++.+|.+++...-- .|...+ -..||.|.....+.|.+..+..+|.++++ .|++|.... . +.
T Consensus 255 n~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks 334 (696)
T KOG2471|consen 255 NHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKS 334 (696)
T ss_pred chHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccc
Confidence 99999998876522 121111 22346777777788888888888877764 465554321 1 11
Q ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhh
Q 039029 261 TRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309 (319)
Q Consensus 261 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (319)
-..+|| ..-.|...|++-.|.+.|.+.... +.-++..|..+.++|..
T Consensus 335 ~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 335 MEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 112333 345688999999999999999875 67799999999999853
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.12 E-value=0.3 Score=23.32 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 265 YNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
+-.+..++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445777888999999999999999875
No 308
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.84 E-value=2.2 Score=31.54 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=49.2
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcChhhHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG--IMPTASTYNLLIHE 89 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 89 (319)
|.+..++.+.+.+++.+++.+.++-.+.++ .+...-..+++.++-.|++++|..-++-.-+.. ..+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566777778888888887777666543 255566777788888888888876666554432 12334455555544
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.59 E-value=4 Score=29.64 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=47.0
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHH
Q 039029 192 IDGHCTNGNIERAFSLLKEMDRMKVHPD--EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (319)
...+...+++++|..-++.........+ ...-..|.+.....|.+++|+..++.....+..+ .....-.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~---------~~~elrG 166 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA---------IVAELRG 166 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH---------HHHHHhh
Confidence 3445566666666666665543210000 1112234455556666666666666655432211 1122334
Q ss_pred HHHHhcCchhHHHHHHHHHHhCC
Q 039029 270 QGLCKNQEGDLAEELLREMVSKG 292 (319)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~~ 292 (319)
+.+...|+-++|+.-|+..+..+
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHcc
Confidence 55666677777777776666653
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.47 E-value=3.4 Score=28.53 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=9.6
Q ss_pred HHHcCchhHHHHHHHHHhhC
Q 039029 90 LLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~ 109 (319)
+...|++.+|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 33445555555555554443
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.47 E-value=2.5 Score=26.94 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 28 EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
+..+-++.+......|++.+..+.+++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666666677777777777777777777777777666544
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.38 E-value=13 Score=35.08 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHH
Q 039029 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNA 267 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (319)
|.+....+.....+++|.-.|+..-+ ..--+.+|...|+|.+|+.+..++.... +.. ..+-..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~-----~~~a~~ 1004 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DEL-----VILAEE 1004 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHH-----HHHHHH
Confidence 33344444555667777766665433 1345677888888888888887764311 110 011256
Q ss_pred HHHHHHhcCchhHHHHHHHHHHh
Q 039029 268 LIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 268 l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
|+.-+...++.-+|-++..+..+
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc
Confidence 77778888888888888877765
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.33 E-value=0.086 Score=36.40 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=29.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRD 69 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 69 (319)
++..+.+.+.+......++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 455555556666666666666654444455556666666666655555555544
No 314
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.29 E-value=7.7 Score=32.32 Aligned_cols=138 Identities=8% Similarity=0.049 Sum_probs=84.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcChh------hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHH--HHHH
Q 039029 55 YCNKGNLEMAFSFRDEMVKQGIMPTAS------TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI--NGYC 126 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 126 (319)
+-+.+++.++.++|.++.+.. ..+.. .-+.++.+|.. .+.+.....+..+.+... . ..|-.+. -.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--K-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--C-chHHHHHHHHHHH
Confidence 446789999999999887652 11212 23455666653 455666666666655422 1 1233332 2345
Q ss_pred hcCChHHHHHHHHHHHHc--CCC------------ccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC----CCccHHHH
Q 039029 127 RCGNAKKAFSLHDEMIHK--GIQ------------PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG----MLPDIVMF 188 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ 188 (319)
+.+++.+|.+.+..-.+. +.. +|-..-+..+.++...|++.++..+++++...- ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899999888776654 211 122223445667788999999999998887652 33678888
Q ss_pred HHHHHHHhc
Q 039029 189 NALIDGHCT 197 (319)
Q Consensus 189 ~~l~~~~~~ 197 (319)
+.++-.+++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 875555443
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.26 E-value=8 Score=32.48 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=73.7
Q ss_pred HHHhccCChHHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 18 SGMCKEGRLEEASR-MLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 18 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
.-....|+.-.|-+ ++.-+....-.|+.. ..........|+++.+...+...... +.....+...+++...+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344566555543 333333332223332 22333455678888887777665443 233556677777888888888
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
++|...-.-|....++ ++..........-..|-++++...++++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888777776665 55555444444555666777777777776543
No 316
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.05 E-value=5.2 Score=30.91 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH---
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL--- 160 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 160 (319)
..=|++++..++|.++..+.-+.-+.--+..+......|-.|.+.+++..+.++-..-.+..-.-+...|..++..|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 34478899999999999877766554333445666777778999999999999888777642122233466666555
Q ss_pred --hhhccHHHHHHHH
Q 039029 161 --SKQNRMIEADQLF 173 (319)
Q Consensus 161 --~~~~~~~~a~~~~ 173 (319)
.-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 4579999999887
No 317
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.93 E-value=5.5 Score=29.96 Aligned_cols=59 Identities=10% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHH---HHH---HHHcCCcHHHHHHHHHHHHHc
Q 039029 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNT---LMH---GRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~---~~~~~g~~~~a~~~~~~~~~~ 249 (319)
....-...+++.+|..+|+++....+..+..-|.. ++. .+.-..+.-.+...+++..+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 33444566788999999998866544333322221 111 112234555566666666553
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.89 E-value=0.78 Score=22.08 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46788899999999999999999998864
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.72 E-value=0.91 Score=21.82 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=22.2
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 222 TYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
+|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667778888888888888888887763
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.51 E-value=13 Score=33.76 Aligned_cols=265 Identities=15% Similarity=0.113 Sum_probs=139.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHhC---------------CCCCCHHhHH----HHH--HHHHhcCChHHHHHHHHHHHHc
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKEN---------------GLVPTAVTYN----TLI--DGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~----~l~--~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
-|...++.|+++.|-.++++.... .+ |+....+ .++ -......++.+|..++.++...
T Consensus 366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~ 444 (894)
T COG2909 366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHF 444 (894)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 344556677888887777765211 11 1111111 122 2344567899999998888765
Q ss_pred CCCcChh-------hHHHH-HHHHHHcCchhHHHHHHHHHhhC----CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039029 75 GIMPTAS-------TYNLL-IHELLMERKMVEADDMLKEMGEK----GIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142 (319)
Q Consensus 75 ~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (319)
-..|+.. .++.+ .......|+++++.++.+..... ...+....+..+..+..-.|++++|..+..+..
T Consensus 445 l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 445 LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 3232222 22222 12234568888888887776543 233456677778888888999999999988776
Q ss_pred HcCCCccHHHHHHH-----HHHHhhhccH--HHHHHHHHHHhhC--CCC----ccHHHHHHHHHHHhcCCcHHHHHHHHH
Q 039029 143 HKGIQPTMLTYTSL-----IFVLSKQNRM--IEADQLFENFLAK--GML----PDIVMFNALIDGHCTNGNIERAFSLLK 209 (319)
Q Consensus 143 ~~~~~~~~~~~~~l-----~~~~~~~~~~--~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (319)
+..-.-+...+..+ ...+...|+. .+....+...... .-. +-..+...++.++.+ .+.+..-..
T Consensus 525 ~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear 601 (894)
T COG2909 525 QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEAR 601 (894)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhh
Confidence 64222233332222 2335556633 2333333332221 001 123445555555555 222222222
Q ss_pred HH----HhCCCCCChh--hHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHH--HHHhcCchhHH
Q 039029 210 EM----DRMKVHPDEV--TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ--GLCKNQEGDLA 281 (319)
Q Consensus 210 ~~----~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A 281 (319)
.- ......|-.. .+..|+......|+.++|...++++......+... ++..+-...+. .-...|+.+.+
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~---~~~~a~~~~v~~~lwl~qg~~~~a 678 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH---VDYLAAAYKVKLILWLAQGDKELA 678 (894)
T ss_pred hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC---chHHHHHHHhhHHHhcccCCHHHH
Confidence 11 1111111111 12357788889999999999999987765444311 11111112222 23456777777
Q ss_pred HHHHHH
Q 039029 282 EELLRE 287 (319)
Q Consensus 282 ~~~~~~ 287 (319)
.....+
T Consensus 679 ~~~l~~ 684 (894)
T COG2909 679 AEWLLK 684 (894)
T ss_pred HHHHHh
Confidence 666555
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.46 E-value=8.3 Score=31.29 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=49.9
Q ss_pred CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
....+|..++..+.+.|.++.|...+.++...+...... .+...-.-+......|+.++|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888899999999999999999887754222210 123445556777788999999988888877
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.88 E-value=0.56 Score=21.18 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCchhHHHHHHH
Q 039029 264 TYNALIQGLCKNQEGDLAEELLR 286 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~ 286 (319)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888999999999998875
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.82 E-value=3.5 Score=25.98 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 039029 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
++.+-++.+......|++....+.+++|.+.+|+.-|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555666666666666666666666666666666554
No 324
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.58 E-value=2.3 Score=33.75 Aligned_cols=89 Identities=15% Similarity=0.006 Sum_probs=48.2
Q ss_pred HHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHH
Q 039029 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (319)
.-|.++|.+++|+..|...+..... +..++..-..+|.+...+..|+.=.......+ ..-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 4567777777777777766554221 56666666667777777776666655554432 111222333333333344455
Q ss_pred HHHHHHHHHHH
Q 039029 238 EARRLLDQMKR 248 (319)
Q Consensus 238 ~a~~~~~~~~~ 248 (319)
+|.+=++.+++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555554444
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.43 E-value=6.6 Score=28.59 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHH--HHHHHHhhhccHHHHHHHHHHHhhCCCCcc--HHHHHHH
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT--SLIFVLSKQNRMIEADQLFENFLAKGMLPD--IVMFNAL 191 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 191 (319)
..|..++.... .+.. +.....+++....-...-.++. .+...+...+++++|...++.........+ ..+--.|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34445554443 2333 4445555555542111111222 223557788889999888887775421111 1222335
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 192 IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
.+.....|.+++|..+++...+.+ ........-.+.+...|+-++|..-|...+..+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 566677888999998888776543 123334445677888899999999999888865
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.24 E-value=7 Score=28.65 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=41.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccH-----HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTM-----LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (319)
.-+++.|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 33555666666666666655541 2211 22333334445555555555555555544321 11222222334555
Q ss_pred CCcHHHHHHHHHHHHhC
Q 039029 198 NGNIERAFSLLKEMDRM 214 (319)
Q Consensus 198 ~~~~~~a~~~~~~~~~~ 214 (319)
...++.|++=|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 55555555555555543
No 327
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.96 E-value=5.8 Score=27.35 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=62.9
Q ss_pred HHHHhCCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCcChhhHHHHHHHHHHcCc-hhHHHHHHHH
Q 039029 34 EQMKENGLVPTAV--TYNTLIDGYCNKGNLEMAFSFRDEMVKQG-----IMPTASTYNLLIHELLMERK-MVEADDMLKE 105 (319)
Q Consensus 34 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 105 (319)
..|.+.+..++.. ..+.++.-....+++.....+++.+.... -..+...|..++.+..+..- ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3344444444432 34666666666777777777776664321 12356678888888765555 4456677777
Q ss_pred HhhCCCCCChHHHHHHHHHHHhcCChH
Q 039029 106 MGEKGIVPDSITYNILINGYCRCGNAK 132 (319)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (319)
+.+.+.+++..-|..++.++.+....+
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 777777888888888888877654433
No 328
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.89 E-value=7.5 Score=28.52 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=63.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC
Q 039029 54 GYCNKGNLEMAFSFRDEMVKQGIMPT----ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (319)
-+...|++++|..-|.+.+..-.... ...|..-..++.+.+.++.|+.-..+.++.++. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 34577888888888888887632211 223444456778888888888888888776543 3444445567888888
Q ss_pred ChHHHHHHHHHHHHcC
Q 039029 130 NAKKAFSLHDEMIHKG 145 (319)
Q Consensus 130 ~~~~a~~~~~~~~~~~ 145 (319)
.+++|+.=|.++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 8999999888888763
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.68 E-value=6.4 Score=29.28 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=22.3
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (319)
.+.+.+...+++...++-.+..+. |...-..++..++-.|+|++|..-++-
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHH
Confidence 334444444444444443333222 333444444445555555555444433
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.29 E-value=17 Score=31.91 Aligned_cols=180 Identities=15% Similarity=0.090 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHH-----HHhcCChHHHHHHHHHHHH-------cCCCcChhhHHHHHHHHHHc
Q 039029 26 LEEASRMLEQMKENGLVPTAVTYNTLIDG-----YCNKGNLEMAFSFRDEMVK-------QGIMPTASTYNLLIHELLME 93 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 93 (319)
...|.+.++...+.| +...-..+..+ +....+.+.|+.++..+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888877765 22222222222 3355689999999998877 44 334566677777764
Q ss_pred C-----chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh--hhcc
Q 039029 94 R-----KMVEADDMLKEMGEKGIVPDSITYNILINGYCR-CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS--KQNR 165 (319)
Q Consensus 94 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 165 (319)
. +...|..++....+.|.+ +.......+..... ..+...|.++|......|.. ....+..++-... ...+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 3 567799999988887643 44433332222222 24678999999999988842 2222222222211 3457
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Q 039029 166 MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
...|..++.+.-+.|.. ....-...+..+.. +.++.+...+..+.+.+
T Consensus 380 ~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 78889999988888733 32222223333333 66666666555555443
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.17 E-value=3.3 Score=32.98 Aligned_cols=90 Identities=14% Similarity=0.002 Sum_probs=56.2
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHH
Q 039029 88 HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
.-|.+.|.+++|+..|.......+. +++++..-..+|.+...+..|..=.......+ ..-...|+.-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 3467788888888888877665322 77777777788888887777766665555442 112233444444444556666
Q ss_pred HHHHHHHHHhhC
Q 039029 168 EADQLFENFLAK 179 (319)
Q Consensus 168 ~a~~~~~~~~~~ 179 (319)
+|.+-++..++.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 666666655554
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.03 E-value=2 Score=22.56 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=9.6
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 039029 122 INGYCRCGNAKKAFSLHDEMI 142 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~ 142 (319)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 333
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.81 E-value=19 Score=32.03 Aligned_cols=191 Identities=14% Similarity=0.070 Sum_probs=106.4
Q ss_pred HHHHHHHHh-hCCCCCC--hHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCccH-----HHHHHHHHHHhhhccHHHH
Q 039029 99 ADDMLKEMG-EKGIVPD--SITYNILINGYC-RCGNAKKAFSLHDEMIHKGIQPTM-----LTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 99 a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a 169 (319)
|++.++.+. +..++|. ..++-.+...+. ...+++.|...+++.....-.++. ..-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 344455554 3333332 334445555555 677888888888876554222221 12234456666666555 8
Q ss_pred HHHHHHHhhCC----CCccHHHHHHH-HHHHhcCCcHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHH--cCCcHHHH
Q 039029 170 DQLFENFLAKG----MLPDIVMFNAL-IDGHCTNGNIERAFSLLKEMDRMK---VHPDEVTYNTLMHGRC--RQGKVEEA 239 (319)
Q Consensus 170 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a 239 (319)
...+++.++.- ..+-...|..+ +..+...++...|.+.++.+.... ..|...++..++.+.. ..+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 88777766541 11222333333 333333479999999998875532 2334444555555443 45667777
Q ss_pred HHHHHHHHHcCCCC--CCcccCcchhhHHHHHHHH--HhcCchhHHHHHHHHHHh
Q 039029 240 RRLLDQMKRRGIKP--DHISFNPTRLTYNALIQGL--CKNQEGDLAEELLREMVS 290 (319)
Q Consensus 240 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 290 (319)
.+.++++......+ +.....|-..+|..+++.+ ...|+++.+...++++.+
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777764432221 1111456667888887755 467777777777666643
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.65 E-value=7.3 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=21.2
Q ss_pred hccHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 163 QNRMIEADQLFENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.++++++..++..+.-..+. +...++.. ..+...|++.+|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhc
Confidence 45555555555544433211 11222222 223445555555555555544
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.50 E-value=1.9 Score=25.89 Aligned_cols=54 Identities=9% Similarity=-0.084 Sum_probs=38.7
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHH
Q 039029 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285 (319)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 285 (319)
.+..| .....++|+..|...++.-..+... -.++..++.+|...|++.+++++-
T Consensus 13 GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~r-----f~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 13 GLKLY-HQNETQQALQKWRKALEKITDREDR-----FRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhhcCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 6678889999999988764443321 157788889999999998887763
No 336
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.00 E-value=21 Score=31.43 Aligned_cols=180 Identities=19% Similarity=0.137 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHH-----HHHcCchhHHHHHHHHHhh-------CCCCCChHHHHHHHHHHHhc
Q 039029 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHE-----LLMERKMVEADDMLKEMGE-------KGIVPDSITYNILINGYCRC 128 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 128 (319)
...+.++++.....| +......+..+ +...++.+.|..+++...+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888776 23333333332 3356789999999998876 44 333556667777764
Q ss_pred C-----ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhh-hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHH--hcCCc
Q 039029 129 G-----NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK-QNRMIEADQLFENFLAKGMLPDIVMFNALIDGH--CTNGN 200 (319)
Q Consensus 129 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 200 (319)
. +.+.|+.++.+....| .|+...+...+..... ..+...|.++|...-+.|..+ ...+..++-.. ....+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCC
Confidence 3 6778999999999887 3455444443333333 356789999999998887542 22222222111 13347
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
...|..++.+.-+.| .|...--...+..+.. ++++.+.-.+..+.+.+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 889999999988877 3332222222233333 66666666666555544
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.64 E-value=13 Score=28.74 Aligned_cols=268 Identities=14% Similarity=0.172 Sum_probs=152.7
Q ss_pred CCCCCCcccHHHHHHH-HhccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC
Q 039029 4 RGVQPDSYTYGSFVSG-MCKEGRLEEASRMLEQMKENGLVPTA---VTYNTLIDGYCNKGNLEMAFSFRDEMVKQ---GI 76 (319)
Q Consensus 4 ~g~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 76 (319)
.|-.||+..=|..-.+ -.+...+++|+.-|+...+....... .....++....+.+++++....|.+++.- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4556776654443322 23456889999999988875433333 34556788888999999999888887642 11
Q ss_pred --CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC--CCCCChHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCC--
Q 039029 77 --MPTASTYNLLIHELLMERKMVEADDMLKEMGEK--GIVPDSIT----YNILINGYCRCGNAKKAFSLHDEMIHKGI-- 146 (319)
Q Consensus 77 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 146 (319)
.-+....|.++.......+.+...++|+.-.+. ..+ +... -..|...|...+++.+..+++.++...-.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 224456777777777677777766666654321 111 2222 24567788888888888888888876411
Q ss_pred --Ccc-------HHHHHHHHHHHhhhccHHHHHHHHHHHhhC-CCCccHHHHHHHHH----HHhcCCcHHHHHH-HHHHH
Q 039029 147 --QPT-------MLTYTSLIFVLSKQNRMIEADQLFENFLAK-GMLPDIVMFNALID----GHCTNGNIERAFS-LLKEM 211 (319)
Q Consensus 147 --~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~~~~~~a~~-~~~~~ 211 (319)
..| ...|..=+..|....+-.....++++.+.. .-.|.+.....+-. +..+.|.+++|.. +|+..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 111 145666677777777777777777766543 23345544443322 2345577777654 33433
Q ss_pred Hh---CCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCc------ccCcchhhHHHHHHHHHhcCchhHHH
Q 039029 212 DR---MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHI------SFNPTRLTYNALIQGLCKNQEGDLAE 282 (319)
Q Consensus 212 ~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 282 (319)
.. .| .|...+.... +.+...+.+.|+.|-.. .-.|.+.+.+.++.+|.. ++..+-.
T Consensus 259 KNYDEsG-spRRttCLKY-------------LVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE 323 (440)
T KOG1464|consen 259 KNYDESG-SPRRTTCLKY-------------LVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFE 323 (440)
T ss_pred hcccccC-CcchhHHHHH-------------HHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHH
Confidence 33 23 2222221110 11222334455544322 134566777888888754 4444444
Q ss_pred HHHHH
Q 039029 283 ELLRE 287 (319)
Q Consensus 283 ~~~~~ 287 (319)
++++.
T Consensus 324 ~Il~~ 328 (440)
T KOG1464|consen 324 RILKS 328 (440)
T ss_pred HHHHh
Confidence 44443
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.53 E-value=26 Score=32.11 Aligned_cols=50 Identities=12% Similarity=-0.127 Sum_probs=31.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCC----CCChHHHHHHHHH--hhhcchhhhh
Q 039029 267 ALIQGLCKNQEGDLAEELLREMVSKGI----TPDDNTYFSLIEG--IASVDKAAES 316 (319)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~--~~~~g~~~~A 316 (319)
.|+......|+.++|...+.++..... .++...-...++. ....|+.++|
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a 678 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELA 678 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHH
Confidence 677788889999999998888876522 3333333333333 2345555544
No 339
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=85.88 E-value=7.4 Score=26.98 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhh
Q 039029 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
.+...+.+.|.+++. --..++..+...++.-.|.++++++.+.+...+..|....++.+...|-..
T Consensus 7 ~~~~~lk~~glr~T~--------qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTP--------QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 445566777877664 346788888888888999999999999877777777777778887777544
No 340
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=85.56 E-value=12 Score=29.91 Aligned_cols=85 Identities=16% Similarity=0.254 Sum_probs=50.8
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhH--HHHHHHHHhcCchhHHHHHHHHHHh-----CCCCCChH
Q 039029 226 LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY--NALIQGLCKNQEGDLAEELLREMVS-----KGITPDDN 298 (319)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 298 (319)
++....+.++.++|.++++++.+.-..-+. |+...| ..+.+.+...||..++.+.+.+..+ .|++|+..
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e----~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKE----PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 344445566788888888887665222111 223333 4566777788899888888888776 47777655
Q ss_pred H-HHHHHHH-hhhcchhh
Q 039029 299 T-YFSLIEG-IASVDKAA 314 (319)
Q Consensus 299 ~-~~~l~~~-~~~~g~~~ 314 (319)
+ |..+-.- |...|++.
T Consensus 157 ~~fY~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFA 174 (380)
T ss_pred hhHHHHHHHHHHHHHhHH
Confidence 4 3333332 33444443
No 341
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.51 E-value=8.6 Score=25.71 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=18.4
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 039029 173 FENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
++.+...++.|++......+++|.+.+|+..|.++|+-+
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333344444444444444444444445554444444444
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.43 E-value=11 Score=27.03 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 131 AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
+++|...|++..+. .|+..+|..-+.... .|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 34455555555543 566667766665543 234444444444
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.34 E-value=23 Score=30.93 Aligned_cols=133 Identities=16% Similarity=0.136 Sum_probs=92.3
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.-+.++..+-++|-.++|+++- ..|+. -.....+.|+++.|.++..+.. +..-|..|..+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 4556777777778777776653 12222 2334457899999988876643 5677999999999
Q ss_pred HcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHH
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.|. .|.. | .+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~A-F----~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNLA-F----LAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cchH-H----HHHHHcCCHHHHHH
Confidence 99999999999887654 45566677778887776666666666663 3332 2 24556799999988
Q ss_pred HHHHHh
Q 039029 172 LFENFL 177 (319)
Q Consensus 172 ~~~~~~ 177 (319)
++..-.
T Consensus 743 lLi~t~ 748 (794)
T KOG0276|consen 743 LLISTQ 748 (794)
T ss_pred HHHhcC
Confidence 876543
No 344
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=85.30 E-value=18 Score=31.88 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=0.0
Q ss_pred cCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 232 RQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
+.|++.+|.+.+-.+......|..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHH
Confidence 457888888888888777776665
No 345
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.30 E-value=23 Score=30.32 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=107.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
|....-+++..+.......-+..+..+|+..| -+...|..++.+|... ..+....+|+++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455566666666666666777777777664 3566777788888777 667777788877776554 4444444444
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-----ccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHhc
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQ-----PTMLTYTSLIFVLSKQNRMIEADQLFENFLAK-GMLPDIVMFNALIDGHCT 197 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 197 (319)
.|-+ ++...+...|.++..+-++ .-...|..+.... ..+.+....+...+... |...-...+.-+-..|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 7777777777777654221 0112444444321 24455555555555543 333334555566677888
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
..++.+|.+++..+.+.+ ..|...-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 888999999888877664 33444444444433
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.41 E-value=20 Score=28.91 Aligned_cols=125 Identities=10% Similarity=0.032 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---CCcHHHHHHHH
Q 039029 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR---QGKVEEARRLL 243 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~ 243 (319)
+.-+.+++++++.+. .+...+..++..+.+..+.++..+-++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344566666666633 356666677777777777777777777776653 2355666666655443 22455555555
Q ss_pred HHHHHc--CCCCCC-cccCcch-------hhHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Q 039029 244 DQMKRR--GIKPDH-ISFNPTR-------LTYNALIQGLCKNQEGDLAEELLREMVSKGI 293 (319)
Q Consensus 244 ~~~~~~--~~~~~~-~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 293 (319)
.+.++. +..... ....+.. ..+..+..-+...|-.+.|..+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554332 000000 0000111 2233344445678999999999999998754
No 347
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.04 E-value=18 Score=28.26 Aligned_cols=139 Identities=7% Similarity=0.127 Sum_probs=88.4
Q ss_pred ccHHHHHHHHHHHhh-CCCCccHHHHHHHHHHHhc-CC-cHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHcCCcHHHH
Q 039029 164 NRMIEADQLFENFLA-KGMLPDIVMFNALIDGHCT-NG-NIERAFSLLKEMD-RMKVHPDEVTYNTLMHGRCRQGKVEEA 239 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (319)
..+.+|+++|+.... ..+.-|..+...+++.... .+ ....-.++.+-+. ..+-.++..+...++..++..++|.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 344566666663221 2244467777777776655 22 2222223333332 223467778888899999999999999
Q ss_pred HHHHHHHHHc-CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH-----HHhCCCCCChHHHHHHHHHhhh
Q 039029 240 RRLLDQMKRR-GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE-----MVSKGITPDDNTYFSLIEGIAS 309 (319)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 309 (319)
.+++...... +... |...|..++......||..-...+..+ +...|+..+...-..+-+.+.+
T Consensus 222 ~~fW~~~~~~~~~~~-------D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGN-------DPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHhcccCCCCC-------CCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 9999887654 2222 337899999999999998877776665 2334666666666665555544
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.74 E-value=21 Score=28.73 Aligned_cols=117 Identities=11% Similarity=0.052 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc---CCcHHHHHHHHH
Q 039029 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT---NGNIERAFSLLK 209 (319)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 209 (319)
.-+.++++..+.+ +.+.......+..+.+..+.+...+.++++...... +...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445555555552 344555555666666666666666666666655322 45555555544332 122334444443
Q ss_pred HHHhC------CC------CCC-----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 039029 210 EMDRM------KV------HPD-----EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251 (319)
Q Consensus 210 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 251 (319)
+.... +. .++ ..++..+.....+.|..+.|..+++.+++.+.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 32110 10 011 11233344455678899999999998888764
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.69 E-value=33 Score=30.95 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=73.0
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-------------------
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVP---TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ------------------- 74 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------- 74 (319)
|+.+.+.+.+++|+++.+..... .+ ....+..++..+...|+++.|-...-.|...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 56677788888888887665443 22 3345667777777778877776654444321
Q ss_pred --------CC-CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC---------CC-------CCChHHHHHHHHHHHhcC
Q 039029 75 --------GI-MPTASTYNLLIHELLMERKMVEADDMLKEMGEK---------GI-------VPDSITYNILINGYCRCG 129 (319)
Q Consensus 75 --------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~-------~~~~~~~~~l~~~~~~~~ 129 (319)
+. ..+...|..++..+.. .+...-.++..+.... .. .-+...-..|+..|...+
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN 519 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence 11 1245567777776665 3333333322221100 00 112334455888899999
Q ss_pred ChHHHHHHHHHHHH
Q 039029 130 NAKKAFSLHDEMIH 143 (319)
Q Consensus 130 ~~~~a~~~~~~~~~ 143 (319)
++..|+.++-.+.+
T Consensus 520 ~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 520 KYEKALPIYLKLQD 533 (846)
T ss_pred ChHHHHHHHHhccC
Confidence 99999988876653
No 350
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=40 Score=31.34 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=11.8
Q ss_pred HhccCChHHHHHHHHHHH
Q 039029 20 MCKEGRLEEASRMLEQMK 37 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~ 37 (319)
+..++++++|.+.|..+.
T Consensus 356 lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHhhhHHHHHHHHHhhc
Confidence 345677777777777654
No 351
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.00 E-value=6 Score=21.19 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=31.1
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 039029 270 QGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306 (319)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (319)
....+.|-.+++..++++|.+.|+..+...+..+++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3346778888999999999999999999998887764
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.79 E-value=23 Score=27.80 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh-----CCCCCCh
Q 039029 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS-----KGITPDD 297 (319)
Q Consensus 223 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 297 (319)
+....+.|..+|.+.+|.++.++.+..+ | .+...+..++..+...||--.|.+-++++.. .|+..+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--p------L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--P------LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--h------hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 3555678889999999999999888753 2 2335778888999999998888777777643 3666554
Q ss_pred HH
Q 039029 298 NT 299 (319)
Q Consensus 298 ~~ 299 (319)
..
T Consensus 354 si 355 (361)
T COG3947 354 SI 355 (361)
T ss_pred hH
Confidence 43
No 353
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=81.73 E-value=13 Score=27.93 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCC---ChhhH--HHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcc
Q 039029 183 PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP---DEVTY--NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS 257 (319)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 257 (319)
+...-++.|+--|.-+..+.+|...|.. +.++.| +..++ ..-++.....|+.++|.+....+. |....
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-----PeiLd 96 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-----PEILD 96 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-----hHHHc
Confidence 3444455554444444444444444443 223333 22222 234556677777777777776643 33211
Q ss_pred cCcchhhHHHHH----HHHHhcCchhHHHHHHHHHH
Q 039029 258 FNPTRLTYNALI----QGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 258 ~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 289 (319)
.|...+-.+. --..+.|..++|+++.+.=.
T Consensus 97 --~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 97 --TNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred --cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 1221222221 12356666777777666543
No 354
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.44 E-value=3.1 Score=18.81 Aligned_cols=29 Identities=17% Similarity=-0.008 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
..|..+...+...|+++.|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45778888999999999999999988763
No 355
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.13 E-value=8.6 Score=27.69 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhc
Q 039029 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310 (319)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (319)
..+-.|.+.|.+++|.+++++..+. |+......-+....+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 4456799999999999999999873 5555555544444443
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.71 E-value=14 Score=24.70 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 101 DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
+-++.+....+.|++.....-++++.+.+++..|.++|+-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555443
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.50 E-value=26 Score=27.55 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
++....+.|..+|.+.+|.++.+..+..+ +.+...+-.++..+...||--.+..-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44555677788888888888888777764 336677777888888888765565555554
No 358
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.19 E-value=2.4 Score=28.53 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=26.6
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHh
Q 039029 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307 (319)
Q Consensus 272 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 307 (319)
....|.-..|-.+|++|++.|-+|| .|..|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4456777889999999999999997 456666654
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.95 E-value=11 Score=22.83 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=7.1
Q ss_pred cCChHHHHHHHHHHHH
Q 039029 128 CGNAKKAFSLHDEMIH 143 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~ 143 (319)
..+.++|+..+....+
T Consensus 19 ~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 19 QNETQQALQKWRKALE 34 (80)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3344444444444444
No 360
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.79 E-value=20 Score=25.84 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
+++|...|++..+. .|+..+|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34455555555443 46666666655544
No 361
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=79.64 E-value=4.5 Score=31.62 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIE 305 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 305 (319)
.-|+..|....+.||+++|+.++++....|+.--..+|..-++
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 4467999999999999999999999999998766667665543
No 362
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=79.47 E-value=5.5 Score=19.18 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 039029 277 EGDLAEELLREMVSKGITPDDNTYFSLIE 305 (319)
Q Consensus 277 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 305 (319)
+++.|..+|++.+.. .|+..+|....+
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 578999999999974 699988876543
No 363
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.33 E-value=49 Score=30.00 Aligned_cols=153 Identities=12% Similarity=0.131 Sum_probs=86.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCc---ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh
Q 039029 51 LIDGYCNKGNLEMAFSFRDEMVKQGIMP---TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (319)
=+..+.+.+.+++|++..+..... .| .......++..+.-.|++++|-...-.|... +..-|..-...+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 345667778888888877665433 33 3455677788888889999888888777754 55566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC---------CC-------CccHHHHHHH
Q 039029 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK---------GM-------LPDIVMFNAL 191 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~-------~~~~~~~~~l 191 (319)
.++......++- ......+...|..++..+.. .+...-.++....... .. .-+......|
T Consensus 436 ~~~l~~Ia~~lP---t~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~L 511 (846)
T KOG2066|consen 436 LDQLTDIAPYLP---TGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVL 511 (846)
T ss_pred ccccchhhccCC---CCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHH
Confidence 555444332221 11111234555555555544 2222221111111000 00 0122334457
Q ss_pred HHHHhcCCcHHHHHHHHHHHHh
Q 039029 192 IDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+..|...++++.|..++-...+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 8888888999999988877653
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.19 E-value=23 Score=30.90 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=46.5
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 039029 58 KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (319)
.|+...|.+.+.........-.......|.....+.|....|..++.+..... ...+-++..+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45666666665555443222222333444555555556666666665555443 22444555566666666666666666
Q ss_pred HHHHHHc
Q 039029 138 HDEMIHK 144 (319)
Q Consensus 138 ~~~~~~~ 144 (319)
|++..+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 6666555
No 365
>PRK09687 putative lyase; Provisional
Probab=77.07 E-value=34 Score=26.95 Aligned_cols=219 Identities=11% Similarity=0.055 Sum_probs=131.4
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCcChhhH
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL----EMAFSFRDEMVKQGIMPTASTY 83 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 83 (319)
+|.......+..+...|. +++...+..+... ++...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344444555566666554 3344444444433 4555666667777777763 4677777766443 3455566
Q ss_pred HHHHHHHHHcCch-----hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 039029 84 NLLIHELLMERKM-----VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158 (319)
Q Consensus 84 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+... ++..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5666666554321 223333333332 2366666677788888876 4566666666653 45566666666
Q ss_pred HHhhhc-cHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHH
Q 039029 159 VLSKQN-RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237 (319)
Q Consensus 159 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (319)
++.+.+ ....+...+..+... ++..+-...+.+..+.++. .+...+-...+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 776653 234566666666643 4777777888888888885 4555555555432 2 245677888888885
Q ss_pred HHHHHHHHHHHc
Q 039029 238 EARRLLDQMKRR 249 (319)
Q Consensus 238 ~a~~~~~~~~~~ 249 (319)
+|...+..+.+.
T Consensus 252 ~a~p~L~~l~~~ 263 (280)
T PRK09687 252 TLLPVLDTLLYK 263 (280)
T ss_pred hHHHHHHHHHhh
Confidence 688888887763
No 366
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.03 E-value=2.6 Score=33.47 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=52.2
Q ss_pred hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHcCCcHHHHH
Q 039029 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV-TYNTLMHGRCRQGKVEEAR 240 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~ 240 (319)
..|.++.|++.|...+.... +....|..-.+.+.+.+.+..|++=+....+. .||.. -|-.=..+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 45667777777776666532 24445555556666677777777666666554 23322 2322233344567777777
Q ss_pred HHHHHHHHcCCCCC
Q 039029 241 RLLDQMKRRGIKPD 254 (319)
Q Consensus 241 ~~~~~~~~~~~~~~ 254 (319)
..+....+.+..+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 77777777665443
No 367
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.84 E-value=24 Score=30.75 Aligned_cols=99 Identities=16% Similarity=-0.027 Sum_probs=54.9
Q ss_pred HcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHH
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQ 171 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
-.|+...|...+.......+...-+....|.....+.|-.-+|-.++.+..... ...+-++..+.+++.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 346666666666555433222233334445555556666666666666655543 3344566666667777777777777
Q ss_pred HHHHHhhCCCCccHHHHHHHH
Q 039029 172 LFENFLAKGMLPDIVMFNALI 192 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~ 192 (319)
.|++..+.... +...-+.|.
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHH
Confidence 77776665332 333334333
No 368
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.34 E-value=3.5 Score=27.77 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=26.2
Q ss_pred HcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHH
Q 039029 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (319)
...|.-..|..+|.+|++.|.+|+. |+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd---------W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD---------WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc---------HHHHHHHh
Confidence 3456667899999999999988875 78887654
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.88 E-value=9.6 Score=21.78 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 224 NTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
-.++.++...|++++|.++++.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456666666666666666666543
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.78 E-value=46 Score=27.86 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=36.6
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChh--hHHHHHHHHHHc
Q 039029 18 SGMCKEGRLEEASRMLEQMKENGLVPTAVT--YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS--TYNLLIHELLME 93 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 93 (319)
...++.|+.+-+..++ +.|..++... ....+..++..|+.+-+ +.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3344566665544443 4565554432 23344455566665433 3334445444322 112234445566
Q ss_pred CchhHHHHHHH
Q 039029 94 RKMVEADDMLK 104 (319)
Q Consensus 94 ~~~~~a~~~~~ 104 (319)
|+.+.+..+++
T Consensus 79 g~~~~v~~Ll~ 89 (413)
T PHA02875 79 GDVKAVEELLD 89 (413)
T ss_pred CCHHHHHHHHH
Confidence 66655444443
No 371
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.51 E-value=11 Score=20.70 Aligned_cols=40 Identities=28% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHh
Q 039029 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307 (319)
Q Consensus 266 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 307 (319)
-.+.-++.+.|++++|.+..+.+++. .|+..-...|-...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHHHH
Confidence 34666889999999999999999985 78776665554443
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.34 E-value=18 Score=22.78 Aligned_cols=75 Identities=15% Similarity=0.029 Sum_probs=41.0
Q ss_pred HcCCcHHHHHHHHHHHHHcCCCCCCcc-cCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCC-CCCChHHHHHHHH
Q 039029 231 CRQGKVEEARRLLDQMKRRGIKPDHIS-FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-ITPDDNTYFSLIE 305 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~ 305 (319)
.+.|++..|.+.+.+..+......... ..+-....-.+.......|++++|...+++.++.- -.-|.......+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 467888888666655544321111100 00011233445666778899999999999987641 1224444444433
No 373
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=75.09 E-value=24 Score=27.91 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=24.4
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 171 QLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
++|+.+...++.|....+.-+.-.+.+.=.+.....+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555566666655555444445555555666666666544
No 374
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.57 E-value=15 Score=32.41 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred hcCchhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 039029 274 KNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306 (319)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (319)
+.|++.+|.+.+-.+....+.|...-...|.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 447788887777777776666665544444443
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.45 E-value=56 Score=28.16 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=118.2
Q ss_pred CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 039029 77 MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
+.|......++..+.....+.-++.+..+|...| .+-..+..++.+|... ..++-..+++++.+..+. |...-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4567777888888988888999999999998875 3677888899999888 667888999998887542 33344444
Q ss_pred HHHHhhhccHHHHHHHHHHHhhCCCC-----ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCCCChhhHHHHHHHH
Q 039029 157 IFVLSKQNRMIEADQLFENFLAKGML-----PDIVMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPDEVTYNTLMHGR 230 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 230 (319)
+..| ..++...+..+|.++...-++ .-...|..+...- ..+.+....+...+... |...-...+..+-..|
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4444 448888888888877655221 0123555555422 35667777777776542 3333455666677888
Q ss_pred HcCCcHHHHHHHHHHHHHcC
Q 039029 231 CRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~ 250 (319)
....++.+|.+++..+.+.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 89999999999999888764
No 376
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=73.86 E-value=91 Score=30.30 Aligned_cols=162 Identities=15% Similarity=0.035 Sum_probs=96.3
Q ss_pred HHhcCChHHHHH------HHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhh-------CCCCccHHHHHHH
Q 039029 125 YCRCGNAKKAFS------LHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-------KGMLPDIVMFNAL 191 (319)
Q Consensus 125 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l 191 (319)
....|.+.++.+ ++......-.++....|..+...+.+.++.++|...-....- ....-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 334455665555 444322222345567788888888999999988876554321 1112234455556
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhC-----C--CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhh
Q 039029 192 IDGHCTNGNIERAFSLLKEMDRM-----K--VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (319)
.-.+...+....+...+.+.... | -+|...+++.+-..+...++++.|.++.+.+.......-....-++..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555666777777776665432 1 2333444455555555668899999999888764222111111245577
Q ss_pred HHHHHHHHHhcCchhHHHHHHH
Q 039029 265 YNALIQGLCKNQEGDLAEELLR 286 (319)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~ 286 (319)
+..+.+.+...+++..|....+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 8888888888888877665443
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.31 E-value=43 Score=26.33 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=91.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCHH-------hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcChhhH
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENGLVPTAV-------TYNTLIDGYCNKGNLEMAFSFRDEMVKQ----GIMPTASTY 83 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 83 (319)
.+.+...+.+++++|+..+.++...|+..+.. +...+...|...|+....-++.....+. .-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 45677788999999999999999988766654 4456788899999877666555443322 112233344
Q ss_pred HHHHHHHHHc-CchhHHHHHHHHHhhCCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCccHHHH
Q 039029 84 NLLIHELLME-RKMVEADDMLKEMGEKGIVPD-----SITYNILINGYCRCGNAKKAFSLHDEMI----HKGIQPTMLTY 153 (319)
Q Consensus 84 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 153 (319)
..++..+... ..++..+.+.....+.....+ ...-.-++..+.+.|.+.+|+.+...+. +.+-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 4555544332 335555555555544321111 1122346788899999999998776554 33434444332
Q ss_pred HHH-HHHHhhhccHHHHHHHH
Q 039029 154 TSL-IFVLSKQNRMIEADQLF 173 (319)
Q Consensus 154 ~~l-~~~~~~~~~~~~a~~~~ 173 (319)
..+ -.+|-...++..+..-+
T Consensus 168 hllESKvyh~irnv~KskaSL 188 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHH
Confidence 222 23344444444443333
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.71 E-value=34 Score=24.85 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=12.4
Q ss_pred HHHHHcCchhHHHHHHHHHhh
Q 039029 88 HELLMERKMVEADDMLKEMGE 108 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~ 108 (319)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345566666666666666554
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.37 E-value=34 Score=25.00 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=25.7
Q ss_pred CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 217 HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
.|+..++..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577778888888888888888888887777663
No 380
>PRK09462 fur ferric uptake regulator; Provisional
Probab=72.24 E-value=12 Score=26.08 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=35.5
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchh
Q 039029 36 MKENGLVPTAVTYNTLIDGYCNK-GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97 (319)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
+.+.|..++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44555554442 33444444443 356677777777777765556666666666676666543
No 381
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.14 E-value=13 Score=19.89 Aligned_cols=32 Identities=13% Similarity=0.374 Sum_probs=17.6
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 039029 21 CKEGRLEEASRMLEQMKENGLVPTAVTYNTLI 52 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 52 (319)
.+.|-..++..+++.|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555666666665555555555555444
No 382
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=72.05 E-value=42 Score=29.89 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=52.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCcChhhHHHH
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNKGNLE------MAFSFRDEMVKQGIMPTASTYNLL 86 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+|+.+|..+|++.++.++++.+...+ -+.-...+|..++...+.|.++ .+.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 79999999999999999999988753 2333457888899999988764 3444444443 33466677766
Q ss_pred HHHHH
Q 039029 87 IHELL 91 (319)
Q Consensus 87 ~~~~~ 91 (319)
+.+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65543
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.96 E-value=16 Score=20.86 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=8.1
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 039029 122 INGYCRCGNAKKAFSLHDEM 141 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~ 141 (319)
+.++...|++++|.++++++
T Consensus 30 I~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444444433
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.84 E-value=35 Score=24.95 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=14.7
Q ss_pred CccHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q 039029 147 QPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178 (319)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.|++.++..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.79 E-value=25 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999998877
No 386
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=71.63 E-value=34 Score=24.48 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=45.1
Q ss_pred HHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 246 MKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
+.+.|++.+. .-..++..+...++.-.|.++++.+.+.+..++..|....+..+.+.|-..+
T Consensus 17 L~~~GlR~T~--------qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTP--------QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCH--------HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4555666554 3356667777777788999999999998877788887777788777775543
No 387
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.49 E-value=77 Score=28.46 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 58 (319)
.+|-.|.|.|++++|.++....... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4788889999999999999555443 333445666677776654
No 388
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=71.23 E-value=89 Score=30.34 Aligned_cols=157 Identities=16% Similarity=0.129 Sum_probs=95.4
Q ss_pred HHhhhccHHHHHH------HHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHH-------HhCCCCCChhhHHH
Q 039029 159 VLSKQNRMIEADQ------LFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM-------DRMKVHPDEVTYNT 225 (319)
Q Consensus 159 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 225 (319)
.....|.+.++.+ ++......-.++....|..+...+-+.++.++|...-... ......-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444555665555 5553333222335677888888889999999988776553 11121223445666
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHc-CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC-----CC--CCCh
Q 039029 226 LMHGRCRQGKVEEARRLLDQMKRR-GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-----GI--TPDD 297 (319)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~ 297 (319)
+...+...+....|...+.+.... ++.... ..+|...+++.+-..+...++++.|.++++.+.+. |. -.+.
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge-~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGE-DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCC-CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 666666677888888887776554 211111 23444455566555566668999999999988764 21 2245
Q ss_pred HHHHHHHHHhhhcchhhhh
Q 039029 298 NTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~A 316 (319)
.++..+.+.+...++++.|
T Consensus 1100 ~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHH
Confidence 5667777777766666654
No 389
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.05 E-value=1.4e+02 Score=31.36 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=71.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC--CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh
Q 039029 50 TLIDGYCNKGNLEMAFSFRDEMVKQGI--MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (319)
.+..+-.+.+.+.+|.-.++.-..... ......+..+...|...++++...-+...... +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344455667788888888877311100 11223344444588888888888877764111 22222 23444566
Q ss_pred cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHH
Q 039029 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
.|+++.|...|+.+.+.+ ++....++.++......|.+.......+-.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 788989999999888875 344566666666655666666555544433
No 390
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.89 E-value=32 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
++..+...+++-.|.++++.+.+.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3444444444444455555544443
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.27 E-value=34 Score=26.36 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=39.4
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
....+..-|...|++++|.++|+.+...-.. +.. ..+...+...+..++.+.|+.+....+.=++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRR-EGW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-CCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3345677788888888888888887432110 000 11222455566667777777777766655543
No 392
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.49 E-value=40 Score=25.92 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=31.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhC----C-CCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 190 ALIDGHCTNGNIERAFSLLKEMDRM----K-VHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
.+..-|...|++++|.++|+.+... | ..+...+...+..++...|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555566666666666666665211 1 1223344455556666666666665554443
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.23 E-value=68 Score=26.91 Aligned_cols=196 Identities=14% Similarity=0.066 Sum_probs=93.6
Q ss_pred CCCCCCCccc--HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 039029 3 SRGVQPDSYT--YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV--TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP 78 (319)
Q Consensus 3 ~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (319)
+.|..|+... ..+.+..++..|+.+-+ +.+.+.|..|+.. .....+...+..|+.+.+..+++.-.......
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 98 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVF 98 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence 4566666533 34456666777877544 3444555544432 12234556667888877655554321110001
Q ss_pred ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc---HHHH
Q 039029 79 TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--YNILINGYCRCGNAKKAFSLHDEMIHKGIQPT---MLTY 153 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 153 (319)
+..- ...+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+ .+.|..++ ..-.
T Consensus 99 ~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~ 169 (413)
T PHA02875 99 YKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCGC 169 (413)
T ss_pred cCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCC
Confidence 1111 22334445566654 4445555565544321 12344555667776554444 34443332 2222
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHH---HHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVM---FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE 220 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (319)
+.+. ..+..|+.+- .+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|..++.
T Consensus 170 TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 170 TPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3333 3344566543 344455555554321 123444445666655 44444556666654
No 394
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=68.73 E-value=20 Score=20.75 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=40.4
Q ss_pred cchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhc
Q 039029 260 PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASV 310 (319)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (319)
|....++.++..+++..-.+.++..+.++...|. .+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4447889999999999999999999999999885 6778888777777653
No 395
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.63 E-value=89 Score=28.04 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=94.6
Q ss_pred cHHHHHHHHh-ccCChHHHHHHHHHHHhCCCCCCHH-----hHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCcChh
Q 039029 12 TYGSFVSGMC-KEGRLEEASRMLEQMKENGLVPTAV-----TYNTLIDGYCNKGNLEMAFSFRDEMVKQG----IMPTAS 81 (319)
Q Consensus 12 ~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 81 (319)
++-.+...+. ...+++.|...+++.....-.++.. .-..++..+.+.+... |...+++.++.- ..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3445555555 6688999999999775543222221 2234566666665555 888888877642 112223
Q ss_pred hHHHH-HHHHHHcCchhHHHHHHHHHhhCC---CCCChHHHHHHHHHHH--hcCChHHHHHHHHHHHHcC---------C
Q 039029 82 TYNLL-IHELLMERKMVEADDMLKEMGEKG---IVPDSITYNILINGYC--RCGNAKKAFSLHDEMIHKG---------I 146 (319)
Q Consensus 82 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~ 146 (319)
.|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+++.+.++.+.... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 223333479999999998876542 2334444444544443 4555677777777764421 1
Q ss_pred CccHHHHHHHHHHHh--hhccHHHHHHHHHHH
Q 039029 147 QPTMLTYTSLIFVLS--KQNRMIEADQLFENF 176 (319)
Q Consensus 147 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 176 (319)
.|...++..++..++ ..|++..+...++++
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345567777776654 466665665555444
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.60 E-value=26 Score=21.97 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=30.9
Q ss_pred HhccCChHHHHHHHHHHHh----CCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 20 MCKEGRLEEASRMLEQMKE----NGLVPT----AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
..+.|++..|.+.+.+... .+.... ....-.+.......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567888888665555443 222211 122233445566677777777777776653
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.43 E-value=69 Score=26.68 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC---------CCCCC
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQ--GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK---------GIVPD 114 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 114 (319)
..+..+...|...|+++.|++.|.+.+.- ...-....|..+|..-...|+|..+..+..+..+. .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45677888888899999999999885542 11223455666677777788888877777766554 12233
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-----CCccHHHHHHHHHHHhhhccHHHHHH-----HHHHHhhCCCCc
Q 039029 115 SITYNILINGYCRCGNAKKAFSLHDEMIHK-G-----IQPTMLTYTSLIFVLSKQNRMIEADQ-----LFENFLAKGMLP 183 (319)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~~~~~l~~~~~~~~~~~~a~~-----~~~~~~~~~~~~ 183 (319)
...+..+.....+ .++.|.+.|-..... . +.|...+....+.++...++-+--.. .|+.+.+.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 4444444444433 555555544332211 0 12333333333334333333222211 22333322
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.+..+..+...| .+++..++++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 344444444444 4567778888877654
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.43 E-value=17 Score=28.61 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHH
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
-|+..|....+.||+++|+.++++..+.|..--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3457777777888888888888888777754333343
No 399
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.33 E-value=57 Score=25.71 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcC-
Q 039029 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR----QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ- 276 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 276 (319)
..|...+.++...+ +......+...|.. ..++++|..+|.+..+.|. + .....+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~---------~a~~~~~-~~~~~g~ 237 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-G---------AACYNLG-LMYLNGE 237 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-H---------HHHHHHH-HHHhcCC
Confidence 35666666665554 33334444444432 3367777777777777663 1 1222222 333333
Q ss_pred --------------chhHHHHHHHHHHhCCCCCChHHHH
Q 039029 277 --------------EGDLAEELLREMVSKGITPDDNTYF 301 (319)
Q Consensus 277 --------------~~~~A~~~~~~~~~~~~~~~~~~~~ 301 (319)
+...|...+......+.........
T Consensus 238 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 238 GVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7777888888888877665555554
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.15 E-value=1.6e+02 Score=30.96 Aligned_cols=62 Identities=18% Similarity=0.077 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
..+|....+.....|.++.|...+-.+.+.+ .| ..+-..+......|+...|+.++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~---------~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP---------EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc---------hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4577788888888999999988888777765 22 45667788888999999999999988865
No 401
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.70 E-value=68 Score=28.70 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=51.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCcChhhHHHHHHHHHHcCchh------HHHHHHHHHhhCCCCCChHHHHHH
Q 039029 50 TLIDGYCNKGNLEMAFSFRDEMVKQ--GIMPTASTYNLLIHELLMERKMV------EADDMLKEMGEKGIVPDSITYNIL 121 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
.++.+|...|++.++.++++..... |-+.-...+|..++...+.|.++ .+.+.+++..- .-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchHHHHH
Confidence 7999999999999999999998865 22334567888888888888754 34455555442 3366666666
Q ss_pred HHHH
Q 039029 122 INGY 125 (319)
Q Consensus 122 ~~~~ 125 (319)
..+.
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 402
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.41 E-value=26 Score=29.58 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=21.0
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 197 TNGNIERAFSLLKEMDRMKVHPDEVTY-NTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
..++++.|..++.++.+. .|+-..| ..=..++.+.+++..|..=+.++++
T Consensus 16 ~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred ccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 334445555555554443 2322221 1112444445555555444444444
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.88 E-value=59 Score=25.32 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHH
Q 039029 149 TMLTYTSLIFVLSKQNRMIEADQLF 173 (319)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (319)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566777777788888877777655
No 404
>PRK10941 hypothetical protein; Provisional
Probab=66.26 E-value=62 Score=25.36 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCCChHHHHH
Q 039029 224 NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNTYFS 302 (319)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 302 (319)
+.+-.+|.+.++++.|.++.+.+.. +.|+.. .-+.--.-.|.+.|.+..|..=++..++. --.|+......
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDP------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4455677888888888888888887 345542 34455555678888888888877777665 22345555555
Q ss_pred HHHHhh
Q 039029 303 LIEGIA 308 (319)
Q Consensus 303 l~~~~~ 308 (319)
.+....
T Consensus 257 ql~~l~ 262 (269)
T PRK10941 257 QIHSIE 262 (269)
T ss_pred HHHHHh
Confidence 555443
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.14 E-value=64 Score=25.46 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHHHcCchhHHHHHHHHHhhCCCCCChHHH-------HHHHHHHHhcCChHHH
Q 039029 86 LIHELLMERKMVEADDMLKEMGEKGIVPDSITY-------NILINGYCRCGNAKKA 134 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a 134 (319)
+.+-..+.+++++|+..+.++...|+..+..+. ..+...|...|++...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 344556667777777777777777765554333 2334445555554443
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.06 E-value=29 Score=21.53 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=16.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchh
Q 039029 57 NKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMV 97 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (319)
..|+.+.|.+++..+. .| +..|..++.++-..|+..
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555554 32 124444555554444433
No 407
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.88 E-value=12 Score=17.15 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=20.4
Q ss_pred CchhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 039029 276 QEGDLAEELLREMVSKGITPDDNTYFSLIE 305 (319)
Q Consensus 276 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 305 (319)
|+.+.|..+|++++.. .+-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 5678899999999875 3345666665554
No 408
>PRK10941 hypothetical protein; Provisional
Probab=65.67 E-value=64 Score=25.29 Aligned_cols=55 Identities=16% Similarity=-0.144 Sum_probs=26.5
Q ss_pred HHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 039029 157 IFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
-.+|.+.++++.|..+.+.+....+. ++.-+.--.-.|.+.|.+..|..=++...
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34445555555555555555544222 33333333444555555555555555443
No 409
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=65.49 E-value=49 Score=24.45 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=24.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCC
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA-VTYNTLIDGYCNKGN 60 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 60 (319)
.+.++..+...|+++.|-+.|.-+.+.. +.|. ..|..-+..+.+.+.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~ 91 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGE 91 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCC
Confidence 3455666666666666666666665542 1222 234444444444443
No 410
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=64.18 E-value=73 Score=25.43 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=7.5
Q ss_pred HHHHHHHHHhcCCcHH
Q 039029 187 MFNALIDGHCTNGNIE 202 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~ 202 (319)
.|..|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 3444444555444443
No 411
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=63.87 E-value=27 Score=22.89 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
.++..+...+..-.|.++++.+.+.+..++..|....++.+.+.|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4555666667777899999999888777788887777788877776543
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.57 E-value=86 Score=26.09 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=34.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHH--HHHHHHHHHh--hhccHHHHHHHHHHHhhC
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTML--TYTSLIFVLS--KQNRMIEADQLFENFLAK 179 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 179 (319)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888776 454444 3344444443 355666777777766554
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.37 E-value=87 Score=26.07 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=35.5
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHh--cCChHHHHHHHHHHHHc
Q 039029 18 SGMCKEGRLEEASRMLEQMKENGLVPTAV--TYNTLIDGYCN--KGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 74 (319)
..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888876 444443 34444444433 45677787777776654
No 414
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=62.97 E-value=25 Score=21.07 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=32.3
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchh
Q 039029 272 LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKA 313 (319)
Q Consensus 272 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 313 (319)
....|+.+.+.+++++..+.|++|.......+..+..+.|+.
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999888888877777677777766653
No 415
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=62.90 E-value=26 Score=22.98 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=21.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (319)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444445555556655555544444444444444444444
No 416
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.40 E-value=77 Score=25.09 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHh----CCCCCChhhH-HHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCccc
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDR----MKVHPDEVTY-NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF 258 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 258 (319)
....+..+...|++.++.+.+.+.+++..+ .|.+.|.... ..|.-.|....-.++.++..+.+.+.|-..+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr-- 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR-- 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh--
Confidence 467788899999999999998887776543 3555554322 223334444455788888999999998765542
Q ss_pred CcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 039029 259 NPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEG 306 (319)
Q Consensus 259 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 306 (319)
.-..+|..+- +....++.+|-.++-+....=-......|.....-
T Consensus 192 -NRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrY 236 (412)
T COG5187 192 -NRYKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVRY 236 (412)
T ss_pred -hhHHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 1113444332 34456788888877776653112233345555443
No 417
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=62.27 E-value=23 Score=23.47 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhh
Q 039029 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 266 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
..++..+...+..-.|.++++.+.+.+...+..|...-++.+.+.|-..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4667777777778899999999999888888888777788888777554
No 418
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.08 E-value=33 Score=22.35 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVK 73 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998887
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.84 E-value=36 Score=28.79 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=60.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVP-TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (319)
-+..+.+.+.++.|..++.++.+.. | .+..|..-..++.+.+++..|+.=...+++.. +-....|..-..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 3455566677777777777777643 3 33444444467777777777777666666653 112333333344555556
Q ss_pred chhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 95 KMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
.+.+|...|+..... .|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 666666666665543 44544444444433
No 420
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.68 E-value=1.4e+02 Score=28.01 Aligned_cols=117 Identities=10% Similarity=0.139 Sum_probs=68.2
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCcChhhHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENG---LVPTAVTYNTLIDGYCNKGNL--EMAFSFRDEMVKQGIMPTASTYNL 85 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 85 (319)
.-|..|+..|...|+.++|+++|.+..... ...-..-+..++..+.+.+.. +-.+++-+...+.........+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 347788888999999999999998887632 111112233455555555544 555555555554432111111111
Q ss_pred ------------HHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh
Q 039029 86 ------------LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127 (319)
Q Consensus 86 ------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (319)
.+-.+......+-+..+++.+....-.++....+.++..|..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122345566677777888887765555566666777666654
No 421
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.88 E-value=46 Score=26.46 Aligned_cols=72 Identities=10% Similarity=0.167 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----------cCchhHH
Q 039029 30 SRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM----------ERKMVEA 99 (319)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 99 (319)
.++|+.+.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+.... .-|..++..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4688888888999998888877777888888999999999988642 225555555543 5888888
Q ss_pred HHHHHHH
Q 039029 100 DDMLKEM 106 (319)
Q Consensus 100 ~~~~~~~ 106 (319)
.++++..
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 8777653
No 422
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.26 E-value=71 Score=24.01 Aligned_cols=69 Identities=9% Similarity=-0.079 Sum_probs=43.8
Q ss_pred hHHHHHHHHHcCCc-------HHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 039029 222 TYNTLMHGRCRQGK-------VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG 292 (319)
Q Consensus 222 ~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 292 (319)
.+..+...|...|+ ...|.+.|.+..+....|... .......-.+.....+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~--~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG--MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC--chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445555666666 445666666666654333321 1122344456677889999999999999999874
No 423
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.06 E-value=56 Score=22.73 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhCCC-----CCChHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCccHHHHHHH
Q 039029 83 YNLLIHELLMERKMVEADDMLKEMGEKGI-----VPDSITYNILINGYCRCGN-AKKAFSLHDEMIHKGIQPTMLTYTSL 156 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
.+.++.-....+.+.....+++.+..... ..+...|..++.+..+..- ---+..+|..+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555556666666666666532110 1234455666666544444 33445555555555555666666666
Q ss_pred HHHHhhh
Q 039029 157 IFVLSKQ 163 (319)
Q Consensus 157 ~~~~~~~ 163 (319)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6655443
No 424
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.98 E-value=77 Score=24.33 Aligned_cols=117 Identities=10% Similarity=-0.033 Sum_probs=66.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCh-hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChH-HHHHHHHHHHhcCChH
Q 039029 55 YCNKGNLEMAFSFRDEMVKQGIMPTA-STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI-TYNILINGYCRCGNAK 132 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 132 (319)
|....+++.|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..=-....+. .||.. ....+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455677777777666654 4555 34455666777777777777655555543 34433 3333445556667778
Q ss_pred HHHHHHHHHHHc----CCCccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 133 KAFSLHDEMIHK----GIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 133 ~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
.|+..+.+.... .+++-......|..+--..-...+..++.+.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888877776432 2333344555555544444444444444443
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.71 E-value=8.3 Score=30.81 Aligned_cols=87 Identities=15% Similarity=-0.023 Sum_probs=40.0
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 039029 58 KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL 137 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (319)
.|.++.|++.|...+..+ ++....|..-...+.+.+++..|++=+....+.... +..-|-.--.+....|+|++|-..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 444555555555555443 223344444444455555555555555444443221 122222223333344555555555
Q ss_pred HHHHHHcCC
Q 039029 138 HDEMIHKGI 146 (319)
Q Consensus 138 ~~~~~~~~~ 146 (319)
+....+.+.
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 555555544
No 426
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.22 E-value=1.3e+02 Score=26.56 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=55.1
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChHHHHHHHHHHHHc-CCC-cChhhHHHHHHHHHHcCchh
Q 039029 21 CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYC-NKGNLEMAFSFRDEMVKQ-GIM-PTASTYNLLIHELLMERKMV 97 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~ 97 (319)
.+.|..+.+..+|++... +++.+...|......+. ..|+.+...+.|+..... |.. .+...|...+..-...+++.
T Consensus 90 ~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 355677777777777765 35566666666555443 356667777777776654 211 24455666666666677777
Q ss_pred HHHHHHHHHhhC
Q 039029 98 EADDMLKEMGEK 109 (319)
Q Consensus 98 ~a~~~~~~~~~~ 109 (319)
....+++++.+.
T Consensus 169 ~v~~iyeRilei 180 (577)
T KOG1258|consen 169 RVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHhh
Confidence 777777776553
No 427
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=58.48 E-value=23 Score=23.45 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=19.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK 58 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 58 (319)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+.+.
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 4444444444555555555555555444444443334444333
No 428
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.97 E-value=48 Score=21.34 Aligned_cols=50 Identities=22% Similarity=0.131 Sum_probs=21.9
Q ss_pred HHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
.+...|++++|..+.+.. ..||...|.+|.. .+.|..++...-+.++...
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 344455555555444433 2345554444433 2344444444444444433
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.91 E-value=58 Score=21.94 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
.+.++|..|..+|+-.... .-|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A------~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLA------LFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBH------HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHH------HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777776654442 4566677777777777777777765
No 430
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=56.78 E-value=37 Score=19.69 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=23.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
....++.++..+++-.-.++++..+.+..+.|. .+..+|..-++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 334455555555555555555555555555542 24444444444433
No 431
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=56.73 E-value=1.4e+02 Score=26.31 Aligned_cols=131 Identities=8% Similarity=0.029 Sum_probs=89.3
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
..|+.+|.---...+.+.+..++..+... .|.--.-|......=.+.|..+.+.++|++.+.. ++.+...|...+..+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 44556666555555666777777777754 2222234556666666788999999999998875 566777776655544
Q ss_pred H-HcCchhHHHHHHHHHhhC---CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 91 L-MERKMVEADDMLKEMGEK---GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 91 ~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
. ..|+.+...+.|+...+. .+. ....|...+.--...+++.....+++...+.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 3 457777788888877653 222 5567888888888888888888888887653
No 432
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.05 E-value=47 Score=20.66 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=18.9
Q ss_pred cCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHH
Q 039029 232 RQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281 (319)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 281 (319)
..|+.+.|.+++..+. .|. ..|...+.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~-----------~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE-----------GWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC-----------cHHHHHHHHHHHcCchhhh
Confidence 4455555555555555 321 2445555555555544433
No 433
>PRK12798 chemotaxis protein; Reviewed
Probab=55.70 E-value=1.2e+02 Score=25.39 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=116.3
Q ss_pred HcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCccH----HHHHHHHHHHhhhccH
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGY-CRCGNAKKAFSLHDEMIHKGIQPTM----LTYTSLIFVLSKQNRM 166 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 166 (319)
-.|+..++.+.+..+.....++....+-.|+.+- ....+..+|+.+|+...-. -|.. .....-+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 4789999999999887776666777777776544 4456889999999987654 2322 2344445566788888
Q ss_pred HHHHHHHHHHhhC-CCCcc-HHHHHHHHHHHhcCCc---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH
Q 039029 167 IEADQLFENFLAK-GMLPD-IVMFNALIDGHCTNGN---IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 167 ~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
+.+..+-.+.... ...|= ...+..+.....+.++ .+....++..|.. .--...|..+.+.-.-.|+.+-|..
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8776665554443 11121 1222333334444443 2333333333321 2234578888888899999999998
Q ss_pred HHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHH
Q 039029 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNT 299 (319)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 299 (319)
.-.+.....-..+. ..+-...|..+.. .-..+++++.+.+..+-...+.|....
T Consensus 279 As~~A~~L~~~~~~--~~~ra~LY~aaa~--v~s~~~~~al~~L~~I~~~~L~~~Dr~ 332 (421)
T PRK12798 279 ASERALKLADPDSA--DAARARLYRGAAL--VASDDAESALEELSQIDRDKLSERDRA 332 (421)
T ss_pred HHHHHHHhccCCCc--chHHHHHHHHHHc--cCcccHHHHHHHHhcCChhhCChhhHH
Confidence 88888776422111 1111222332222 234557777777776665555554433
No 434
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.21 E-value=1.1e+02 Score=24.71 Aligned_cols=155 Identities=17% Similarity=0.107 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHHcCCCc-------------cHHHHHHHHHHHhhhccHHHHHHHHHHHhhC-CCCccHHHHHHHHHH
Q 039029 129 GNAKKAFSLHDEMIHKGIQP-------------TMLTYTSLIFVLSKQNRMIEADQLFENFLAK-GMLPDIVMFNALIDG 194 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 194 (319)
++.+....++..+.+.+..| |...++.+..+ +...+++..+..+...+. |-.--...+......
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 35556666777777765433 22223332221 122333444444444443 222234567777888
Q ss_pred HhcCCcHHHHHHHHHHHHh----CCCCCChhhHHH-HHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHH
Q 039029 195 HCTNGNIERAFSLLKEMDR----MKVHPDEVTYNT-LMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269 (319)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (319)
|++.||.+.|.+.+++..+ .|.+.|...+.. +.-.|....-..+-.+..+.+.+.|-..+.. --..+|..+-
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr---NRlKvY~Gly 190 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR---NRLKVYQGLY 190 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh---hhHHHHHHHH
Confidence 9999999999988877543 455666554433 3334444555677777888888888766542 1224554443
Q ss_pred HHHHhcCchhHHHHHHHHHHh
Q 039029 270 QGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 270 ~~~~~~g~~~~A~~~~~~~~~ 290 (319)
|....++.+|-.+|-+...
T Consensus 191 --~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 191 --CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred --HHHHHhHHHHHHHHHHHcc
Confidence 4456788888888877665
No 435
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.83 E-value=96 Score=23.85 Aligned_cols=118 Identities=11% Similarity=-0.006 Sum_probs=70.3
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHH-HHHHHHHHHhhhccHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDS-ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML-TYTSLIFVLSKQNRMI 167 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 167 (319)
|.....+..|...|.+.+.. .|+. .-|..-+.++.+..+++.+..--....+. .|+.. ....+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55566778888877776655 3454 44556677777888888887766666554 44543 3344445566777788
Q ss_pred HHHHHHHHHhh----CCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 039029 168 EADQLFENFLA----KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211 (319)
Q Consensus 168 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
+++..+.+... ..+.+.......|..+--..-...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88888877633 233444455555555443333344444444443
No 436
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=52.92 E-value=64 Score=21.21 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHh
Q 039029 267 ALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307 (319)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 307 (319)
++++.+.++...++|+++.+-|.++| ..+...-..|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677788899999999999999987 45555544444433
No 437
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.54 E-value=1.2e+02 Score=24.15 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=61.6
Q ss_pred ccHHHHHHHHHHHhhhccHHHHHHHHHHHhh----CCCCccHHHHH-HHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh-
Q 039029 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLA----KGMLPDIVMFN-ALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV- 221 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 221 (319)
-....+..+...|++.++.+.+.+...+..+ .|.+.|....- .+.-.|....-.++.++..+.+.+.|-..+..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3456788888999999999988887776554 35555543222 22333444445677788888888877543322
Q ss_pred ---hHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 222 ---TYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 222 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
+|.-+ .+....++.+|..++.....
T Consensus 193 RyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 22222 23345578888888877654
No 438
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.16 E-value=39 Score=28.19 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHc--CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 224 NTLMHGRCRQGKVEEARRLLDQMKRR--GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
..|++..+-.||+..|+++++.+.-. ++-... ..-.+.++-.+.-+|.-.+++.+|.+.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V--~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV--PACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccC--cchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665543111 000000 01122466677778888888888888887764
No 439
>PRK09857 putative transposase; Provisional
Probab=51.06 E-value=1.3e+02 Score=24.07 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC
Q 039029 223 YNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD 296 (319)
Q Consensus 223 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 296 (319)
+..++......++.++..++++.+.+. ..+.. ....++..-+.+.|.-+++.++.++|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~-------e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHK-------ESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-Ccccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555666666666777666554 22221 3444566667777777778888888888887655
No 440
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.88 E-value=1.2e+02 Score=23.79 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=99.7
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhC---C--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCcChh
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKEN---G--LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-----GIMPTAS 81 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 81 (319)
+...+|....+.|++++..+.|.++... . -.-+..+.|.++...+...+.+-...+|+.-+.. +-..=-.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3456788888999999999988887642 1 1234566788887776666665555555443321 0011112
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCC----C-------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcc
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGI----V-------PDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPT 149 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 149 (319)
+-..+...|...+++.+..+++.++...-- . .-...|..=+..|....+-.+...+|++.... ..-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 334567778888888888888888864311 1 01345666677888888888888888877653 22344
Q ss_pred HHHHHHHHHH-----HhhhccHHHHHHHHH
Q 039029 150 MLTYTSLIFV-----LSKQNRMIEADQLFE 174 (319)
Q Consensus 150 ~~~~~~l~~~-----~~~~~~~~~a~~~~~ 174 (319)
+..... ++- ..+.|++++|..-|-
T Consensus 227 PlImGv-IRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 227 PLIMGV-IRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred hHHHhH-HHHcCCccccccchHHHHHhHHH
Confidence 444433 333 346777877765433
No 441
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=50.62 E-value=66 Score=20.75 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=5.0
Q ss_pred HHcCchhHHHHH
Q 039029 91 LMERKMVEADDM 102 (319)
Q Consensus 91 ~~~~~~~~a~~~ 102 (319)
...|++++|..+
T Consensus 50 mNrG~Yq~Al~l 61 (115)
T TIGR02508 50 MNRGDYQSALQL 61 (115)
T ss_pred HccchHHHHHHh
Confidence 334444444433
No 442
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=50.06 E-value=2e+02 Score=26.02 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHHHc
Q 039029 116 ITYNILINGYCR---CGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 116 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 144 (319)
..+..|+..|.+ ..+...|.+++--+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 456667777765 34666777776655543
No 443
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.85 E-value=1.5e+02 Score=24.56 Aligned_cols=122 Identities=13% Similarity=0.043 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh---hhccHHHHHHHHHHHhhCCCCccHHHHHH
Q 039029 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS---KQNRMIEADQLFENFLAKGMLPDIVMFNA 190 (319)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (319)
...++..+...+...|+.+.|.+++++..-.- ..++......+. ..|. +. ......-|...|.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~---~r------L~~~~~eNR~ffla 105 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGN---CR------LDYRRPENRQFFLA 105 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCc---cc------cCCccccchHHHHH
Confidence 55666667777777888877777777664210 000111000000 0000 00 00011123444444
Q ss_pred H---HHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-cCCcHHHHHHHHHHHHH
Q 039029 191 L---IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-RQGKVEEARRLLDQMKR 248 (319)
Q Consensus 191 l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 248 (319)
+ +....+.|.+..|.++.+-+...+..-|+.....+|+.|+ +.++++-..++.+....
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3 5567788999999999998888765546666666676664 67778878887777654
No 444
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.60 E-value=1.3e+02 Score=23.74 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCchhHHHHHHHHHhhCCC
Q 039029 60 NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM----ERKMVEADDMLKEMGEKGI 111 (319)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 111 (319)
+...|.++|....+.|.. .....+...+.. ..+..+|..+|++..+.|.
T Consensus 92 ~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 92 DKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC
Confidence 345555555544444321 222223333332 2255555555555555543
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=49.51 E-value=95 Score=22.25 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=7.6
Q ss_pred CChHHHHHHHHHHHHcC
Q 039029 129 GNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~ 145 (319)
++.-.|.++++.+.+.+
T Consensus 39 ~~hlSa~eI~~~L~~~~ 55 (169)
T PRK11639 39 PGAISAYDLLDLLREAE 55 (169)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 33444444444444443
No 446
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=48.63 E-value=85 Score=29.83 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=29.9
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCC
Q 039029 197 TNGNIERAFSLLKEMDRMKVHPDE-VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 253 (319)
....+.+++.+|..|...++.+.. ..|......+.+.+.+.+|..+|+.-++....|
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP 147 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP 147 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 334455566666666555544432 234444455555555666666666555544433
No 447
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.80 E-value=1.4e+02 Score=23.73 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=11.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
.+..+...|++..|++++.+..+
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444455555555555554443
No 448
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.51 E-value=86 Score=21.13 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCCcHHHHHHHHH
Q 039029 168 EADQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLK 209 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (319)
.+.++|..|...++-- -...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444433221 23334444444444444444444443
No 449
>PRK09857 putative transposase; Provisional
Probab=46.37 E-value=1.5e+02 Score=23.64 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCC
Q 039029 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 253 (319)
+..++......++.++..++++.+.+. .+........+..-+.+.|.-+++.++..+|...|..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 455666556677777777777777654 23344455567777777887788888888888887653
No 450
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.17 E-value=2.3e+02 Score=25.61 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=57.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCcC------hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCC
Q 039029 57 NKGNLEMAFSFRDEMVKQGIMPT------ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN 130 (319)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (319)
+..++..+.++|..-.+. ++.| ......+.-+|....+.+.|.+++++..+.... +..+--.+..+....|.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcc
Confidence 456777777777665543 1111 234556677888889999999999998876433 44454555667777788
Q ss_pred hHHHHHHHHHHHH
Q 039029 131 AKKAFSLHDEMIH 143 (319)
Q Consensus 131 ~~~a~~~~~~~~~ 143 (319)
-++|+........
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 8888887766653
No 451
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.99 E-value=1.3e+02 Score=22.97 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=30.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-cCchhHHHHHHHHHh
Q 039029 51 LIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM-ERKMVEADDMLKEMG 107 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 107 (319)
++..+-+.++++++...+.++...+...+..-.+.+..+|-. .|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455556666677777777666666555566655555555522 233444444444443
No 452
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.45 E-value=1.1e+02 Score=21.33 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC
Q 039029 95 KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (319)
..-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34555555555555544434433333334444433
No 453
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=44.45 E-value=42 Score=16.65 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHH
Q 039029 265 YNALIQGLCKNQEGDLAEELLR 286 (319)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~ 286 (319)
+-.+.-.+-..|++++|+++++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4556777889999999999954
No 454
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=44.32 E-value=2e+02 Score=24.46 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=55.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH--------hhhccHHHHHHHHHHHhhCC
Q 039029 109 KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL--------SKQNRMIEADQLFENFLAKG 180 (319)
Q Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~ 180 (319)
..+.||..+.+.+...++..-..+-...+|+-..+.+ .|-...+..++-.. .+...-++++++++.|...-
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4577888888888888888888888888888888775 34433333333211 23455678888888776542
Q ss_pred CCccHHHHHHHHHHHh
Q 039029 181 MLPDIVMFNALIDGHC 196 (319)
Q Consensus 181 ~~~~~~~~~~l~~~~~ 196 (319)
-.-|..-+-.|...|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 2224445555555554
No 455
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.25 E-value=1.5e+02 Score=22.88 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=15.8
Q ss_pred HHHHhhhccHHHHHHHHHHHhhCCC
Q 039029 157 IFVLSKQNRMIEADQLFENFLAKGM 181 (319)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (319)
...-...+++..|+++|+++.....
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334566777777777777666543
No 456
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.98 E-value=1.7e+02 Score=23.70 Aligned_cols=134 Identities=11% Similarity=-0.010 Sum_probs=75.0
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhh----CCCCccH
Q 039029 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA----KGMLPDI 185 (319)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 185 (319)
+..|...++.+... +....++..+..+...+. |-.--...+.....-|++-|+.+.|.+.+....+ .|...|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555555433 122233333444444433 2222234566667789999999999988876554 3666666
Q ss_pred HHHHHHH-HHHhcCCcHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 186 VMFNALI-DGHCTNGNIERAFSLLKEMDRMKVHPDE----VTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 186 ~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
..+..-+ -.|....-..+..+..+.+.+.|-..+. .+|..+- |....++.+|..+|-....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 5444322 2344444455555556666666644332 2343332 3455689999998887664
No 457
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.71 E-value=1.5e+02 Score=25.11 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCh-HHHHHHHHHhhhcc
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD-NTYFSLIEGIASVD 311 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 311 (319)
-++...+..+.+.+++..|..+.+++++.+-.|+. ..-..++..|.+.+
T Consensus 301 LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~ 350 (422)
T PF06957_consen 301 LALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNP 350 (422)
T ss_dssp HHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 35566677788999999999999999987533332 23445566665543
No 458
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.99 E-value=1.1e+02 Score=21.11 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=11.9
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHH
Q 039029 226 LMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
|.-++.+.++++++.++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 44445555555555555555544
No 459
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=42.90 E-value=30 Score=19.95 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHhCC-CCCCH
Q 039029 24 GRLEEASRMLEQMKENG-LVPTA 45 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~-~~~~~ 45 (319)
-+++.|+..|.++...| ++++.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 47889999999988754 45443
No 460
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.17 E-value=2.6e+02 Score=24.86 Aligned_cols=156 Identities=14% Similarity=0.073 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHHcC-----------CCccHHHHHHHHHHHhhhccHHHHHHHH-------HHHhhCCCCc-------
Q 039029 129 GNAKKAFSLHDEMIHKG-----------IQPTMLTYTSLIFVLSKQNRMIEADQLF-------ENFLAKGMLP------- 183 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~-------~~~~~~~~~~------- 183 (319)
..++++...|.-....- .|-...+...+..++..+|+.+-+..+. +.+....+.|
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 45667777666555431 1223345555666777777766555444 4443332222
Q ss_pred ------cHHHHHHH---HHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-cCCcHHHHHHHHHHHHHcCCCC
Q 039029 184 ------DIVMFNAL---IDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC-RQGKVEEARRLLDQMKRRGIKP 253 (319)
Q Consensus 184 ------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~ 253 (319)
+...|.++ +....+.|.+..|.++.+-+......-|+.....+|..|+ +..+++-.+++++.....+.-.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 22333333 4445678999999999999888765557777777887774 6778888888888774432111
Q ss_pred CCcccCcchhhHH-HHHHHHHhcCc---hhHHHHHHHHHH
Q 039029 254 DHISFNPTRLTYN-ALIQGLCKNQE---GDLAEELLREMV 289 (319)
Q Consensus 254 ~~~~~~~~~~~~~-~l~~~~~~~g~---~~~A~~~~~~~~ 289 (319)
.-||. .|+ +++..|.+... -+.|...+.++.
T Consensus 412 ----~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 412 ----QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred ----hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 11222 343 45555555444 344555555543
No 461
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.95 E-value=2.4e+02 Score=24.49 Aligned_cols=107 Identities=18% Similarity=0.099 Sum_probs=67.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---CCCccH-----HHHHHHHHHHhhhccHHHHHHHHHHHhh-------CCCCcc---
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHK---GIQPTM-----LTYTSLIFVLSKQNRMIEADQLFENFLA-------KGMLPD--- 184 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~--- 184 (319)
..+.-.|++.+|.+++...--. |...++ ..++.+.-.+.+.|.+..+..+|.+..+ .|+.|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455678999998887544221 211121 2235555566677777777777776653 344332
Q ss_pred -------H-HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 039029 185 -------I-VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231 (319)
Q Consensus 185 -------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (319)
. .+|| ..-.|...|++-.|.+.|.+.... ...++..|..|..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1 2233 344567889999999999887653 3567888998888885
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.15 E-value=96 Score=19.30 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 31 RMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVK 73 (319)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
++|+-....|+..|..+|..++....-.-.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666676666666555556666666666544
No 463
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.81 E-value=1.1e+02 Score=19.84 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=11.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 039029 120 ILINGYCRCGNAKKAFSLHDEM 141 (319)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~ 141 (319)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666665554
No 464
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.62 E-value=3.7e+02 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHhcC--ChHHHHHHHHHHHHc
Q 039029 115 SITYNILINGYCRCG--NAKKAFSLHDEMIHK 144 (319)
Q Consensus 115 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 144 (319)
......++.+|.+.+ ++++|+....++.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 334455667777766 667777777766654
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.59 E-value=2.4e+02 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=11.3
Q ss_pred CChHHHHHHHHHHHHcCCCcc
Q 039029 129 GNAKKAFSLHDEMIHKGIQPT 149 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~ 149 (319)
++.+.|+.++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554443
No 466
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.15 E-value=1.5e+02 Score=23.84 Aligned_cols=77 Identities=9% Similarity=-0.004 Sum_probs=52.4
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHH-HHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHH
Q 039029 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS-LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNA 190 (319)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (319)
..|+..|...+.-..+.|.+.+...++.+..... |.+...|-. .-.-+...++++.+..+|...++.+.. ++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHHH
Confidence 3477778777777777788888888888888773 555655543 223355678888888888887776543 3444433
No 467
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=38.08 E-value=72 Score=17.57 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+.-++.+.|++++|.+..+.+.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 334455566666666666655554
No 468
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=37.83 E-value=64 Score=17.07 Aligned_cols=33 Identities=6% Similarity=0.088 Sum_probs=17.1
Q ss_pred CCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 039029 4 RGVQPDSYTYGSFVSGMCKEGRLEEASRMLEQM 36 (319)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 36 (319)
...|.+...+..+...+-.++....++++|+++
T Consensus 9 ~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~a 41 (46)
T PF06855_consen 9 HSFPKQETDFDEISSYLESNYDYLESMEIFDRA 41 (46)
T ss_dssp TTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHH
Confidence 445555555666665555555555555555544
No 469
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=36.78 E-value=88 Score=18.17 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=22.9
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcc
Q 039029 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVD 311 (319)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 311 (319)
+..+...+.+-.+..+.+.+...|...+..+....+++..+.|
T Consensus 4 L~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 4 LRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3344444555555555555555555555555555555555544
No 470
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.55 E-value=2.4e+02 Score=23.10 Aligned_cols=88 Identities=19% Similarity=0.075 Sum_probs=0.0
Q ss_pred HhccCChHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 20 MCKEGRLEEASRMLEQMKEN---GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
|.+..++..|...|.+-.+. +...+...|+.-..+-...|++..++.-....+..... ....|..=..++....++
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLELERF 169 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHHHHH
Q ss_pred hHHHHHHHHHhh
Q 039029 97 VEADDMLKEMGE 108 (319)
Q Consensus 97 ~~a~~~~~~~~~ 108 (319)
..|..+.++..+
T Consensus 170 ~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 170 AEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHhhhhh
No 471
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.37 E-value=2.4e+02 Score=23.03 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=9.6
Q ss_pred HHhcCCcHHHHHHHHHHHH
Q 039029 194 GHCTNGNIERAFSLLKEMD 212 (319)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~ 212 (319)
+..+.|+..+|.+.++.+.
T Consensus 284 CARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLM 302 (556)
T ss_pred HHHHhhhHHHHHHHHHHHh
Confidence 3344455555555555543
No 472
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=36.29 E-value=1.9e+02 Score=24.64 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=9.1
Q ss_pred HHHhhhccHHHHHHHHHHH
Q 039029 158 FVLSKQNRMIEADQLFENF 176 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~ 176 (319)
+.|.+.++++.|.+.+.+-
T Consensus 51 Dsytr~~~~~~a~~~l~~~ 69 (428)
T cd00245 51 DSYTRVNDYEEAEEGLEES 69 (428)
T ss_pred ccchhhhhhHHHHHHHHhh
Confidence 4444455555554444443
No 473
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.72 E-value=3.4e+02 Score=24.63 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=59.5
Q ss_pred hhhccHHHHHHHHHHHhhCCCCcc------HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 039029 161 SKQNRMIEADQLFENFLAKGMLPD------IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (319)
.+..++..+.+.|..-... ++.| ......+.-+|.+..+.++|.+++++..+.+ +.++.+--.+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhc
Confidence 4566777777777755443 1112 2345667777888899999999999998864 223444445567777888
Q ss_pred cHHHHHHHHHHHHHc
Q 039029 235 KVEEARRLLDQMKRR 249 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~ 249 (319)
.-++|+.+.......
T Consensus 443 ~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSS 457 (872)
T ss_pred chHHHHHHHHHHHhh
Confidence 889998888776543
No 474
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.50 E-value=1.3e+02 Score=19.84 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=21.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
++..+.++...++|+++++-|.+.| ..+...-+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~e 100 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKE 100 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3455666777778888888887776 334443333
No 475
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.07 E-value=2e+02 Score=21.71 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhhCCCCC-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 96 MVEADDMLKEMGEKGIVP-----DSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
...|.+.|.+..+....| .....-.+.....+.|+.++|.+.|..+...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 445666666665442221 12333445566677788888888887777653
No 476
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.05 E-value=1.2e+02 Score=19.03 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=18.0
Q ss_pred ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
|...-..+...+...|++++|++.+-.+++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44555556666666666666666666666543
No 477
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.79 E-value=2.4e+02 Score=22.72 Aligned_cols=19 Identities=21% Similarity=0.601 Sum_probs=11.9
Q ss_pred hHHHHHHHHHhcCchhHHH
Q 039029 264 TYNALIQGLCKNQEGDLAE 282 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~ 282 (319)
+|..|+.+++..|+.+..+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 5666777777776665443
No 478
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=34.79 E-value=2.9e+02 Score=23.58 Aligned_cols=91 Identities=23% Similarity=0.197 Sum_probs=57.0
Q ss_pred HHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHH--------HHhcCchhHH
Q 039029 210 EMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQG--------LCKNQEGDLA 281 (319)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A 281 (319)
.+....+.||..+.+.+...++..-..+-...+|+-..+.+- |-. .-+..++-. -.+...-+++
T Consensus 173 ~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~-------vffLaliiLiNake~ILq~~sdsKEe~ 244 (669)
T KOG3636|consen 173 HLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFL-------VFFLALIILINAKEEILQVKSDSKEEA 244 (669)
T ss_pred hhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-cee-------hHHHHHHHhcccHHHHhhhccccHHHH
Confidence 334456789999999988888888888888888888887642 111 222222211 1234456788
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhh
Q 039029 282 EELLREMVSKGITPDDNTYFSLIEGIA 308 (319)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (319)
+++++.|-..--.-|..-|..|.+-|+
T Consensus 245 ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 245 IKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHHHHcCchhcccccchhHHHHHHHHh
Confidence 888888866422235556666666554
No 479
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=34.73 E-value=4.2e+02 Score=25.43 Aligned_cols=29 Identities=7% Similarity=-0.159 Sum_probs=15.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMV 72 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (319)
+++.+-...+..+.+.+..+ +...+..++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL 661 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAAL 661 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHH
Confidence 56666666666666655433 444444444
No 480
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=34.22 E-value=1.5e+02 Score=24.46 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcCC
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSNS 319 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~s 319 (319)
...-.|-..|+...+--.-.++|.+..++|+-.|..+=..+++-|.+.|..|+-++|
T Consensus 297 d~LLLLT~l~Vg~~~Kl~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lEKkSDS 353 (363)
T TIGR03236 297 DYLLLLTNLAVGEREKLPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLERMSDS 353 (363)
T ss_pred HHHHHHHHHHhCCcccchHHHHHHHHHhcCceeCchhHHHHHHHHHHhCcccccCCC
Confidence 333333344444445556779999999999999999999999999999999987765
No 481
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.92 E-value=2.2e+02 Score=21.87 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-cCChHHHHHHHHHHH
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN-KGNLEMAFSFRDEMV 72 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 72 (319)
-++..+-+.|+++++.+.+.++...+...+..--+.+..+|-. -|....+++.+..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3566677788888888888888887777777666666666533 233344444444443
No 482
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.91 E-value=2.9e+02 Score=23.34 Aligned_cols=131 Identities=17% Similarity=0.111 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCccHHHHH--------HHHHHHhhhccHHHHHHHHHHHhhC-----
Q 039029 115 SITYNILINGYC--RCGNAKKAFSLHDEMIHKGIQPTMLTYT--------SLIFVLSKQNRMIEADQLFENFLAK----- 179 (319)
Q Consensus 115 ~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~----- 179 (319)
...|-.++-.+. ...++++|..+-+.....-.-.+..++. -+-.++...|+.......+......
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 444544443333 3366777776666554331112223332 2223444566665555555544432
Q ss_pred CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHH-------HHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN-------TLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
...--....|.|++.|...+.++.|..+..+.. .|....-+ .+.....-++++..|.+.|-.+...
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 111124556777888888888888887766543 22222111 1223334566788888887777664
No 483
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.66 E-value=1.6e+02 Score=20.35 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=34.5
Q ss_pred cChhhHHHHHHHHHHcCc---hhHHHHHHHHHhh-CCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 78 PTASTYNLLIHELLMERK---MVEADDMLKEMGE-KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
++..+--.+..++.+..+ ..+.+.+++.+.+ ..+.-......-|.-++.+.++++.++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444445555555443 3444556666654 222222233334455666667777777766666654
No 484
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=4.4e+02 Score=25.32 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc-CCCCCCcccCcchhhHHHHHHHHHhcCch
Q 039029 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR-GIKPDHISFNPTRLTYNALIQGLCKNQEG 278 (319)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (319)
.+...+.|.++.+.--..|..++..-...+...|++..+.+++.++.+. +-.++. ..|..++..+...|.-
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~-------~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATK-------DVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHHHHHHHHHHHhCch
Confidence 3445555555544322345666666667777788888888888887763 222222 5565666666555544
No 485
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.45 E-value=2.3e+02 Score=21.95 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=71.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCc
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN 200 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (319)
-+..|.+.-++.-|-...++..+- ..+..+ +--|.+..+..-..++.+-....++.-+.....+++ +...||
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-----IQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-----IQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-----HHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 345555555555554444444321 111111 223444444444444554444455554444454444 345677
Q ss_pred HHHHHHHHHHHHhC------------CCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 201 IERAFSLLKEMDRM------------KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 201 ~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
..+|...++.-... --.|.+.....++..|. .+++++|.+++.++-+.|..|..
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 77777776654221 11467777777777765 46899999999999999887765
No 486
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.06 E-value=3.6e+02 Score=24.09 Aligned_cols=102 Identities=9% Similarity=0.000 Sum_probs=60.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (319)
+.+..+..+++.+ +.-+.+...++++++.. .. ...+..++++....|-.....-+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 3455677777665 44467777788887764 21 567788888888888877777777766665443 333344444
Q ss_pred HHHHhc-CChHHHHHHHHHHHHc-CCCccH
Q 039029 123 NGYCRC-GNAKKAFSLHDEMIHK-GIQPTM 150 (319)
Q Consensus 123 ~~~~~~-~~~~~a~~~~~~~~~~-~~~~~~ 150 (319)
.+.... .--.+.++.+.++.+. ..++..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~ 411 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQP 411 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccH
Confidence 433332 2234445555555443 344444
No 487
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.40 E-value=2.1e+02 Score=21.25 Aligned_cols=178 Identities=17% Similarity=0.095 Sum_probs=0.0
Q ss_pred hCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 108 EKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK--------GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
+.|..++...++.++..+.+..-...=...+-.+..+ +..-+......-+..|-+.|++...-.+|-.....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred CCCcc------HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH-------HHcCCcHHHHHHHHHHH
Q 039029 180 GMLPD------IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG-------RCRQGKVEEARRLLDQM 246 (319)
Q Consensus 180 ~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~g~~~~a~~~~~~~ 246 (319)
.-.++ ...-.+|..-+-. +..--...|.+..-.+++.|...-+.+.+. |-+.-+|.+..++++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kd--k~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l 158 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKD--KPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKL 158 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccc--cCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHcCCCCCCcc-------cCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 247 KRRGIKPDHIS-------FNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 247 ~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
.+..+..+... ..+--...|.....|.+.|..|.|+.++++
T Consensus 159 ~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 159 HELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 488
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=32.35 E-value=3.5e+02 Score=23.80 Aligned_cols=139 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhH--
Q 039029 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY-- 223 (319)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 223 (319)
++.+..-|-.++.-|...+++++|.++..... ....|..+........+..-++..|..+.+ .|...|
T Consensus 569 lpisV~py~~iL~e~~sssKWeqavRLCrfv~------eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~----idKVsyin 638 (737)
T KOG1524|consen 569 LPISVNPYPEILHEYLSSSKWEQAVRLCRFVQ------EQTMWATLAAVAVRKHQMQISEIAYAAALQ----IDKVSYIN 638 (737)
T ss_pred EeeeccccHHHHHHHhccchHHHHHHHHHhcc------chHHHHHHHHHHHhhccccHHHHHHHHhhc----hhhHHHHH
Q ss_pred ---------HHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Q 039029 224 ---------NTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294 (319)
Q Consensus 224 ---------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 294 (319)
..+.....-.|+..+|..++.+. ......+..-.+.-+++.|+++-.+-.+. ++
T Consensus 639 ~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~----------------gl~~qav~lni~m~nW~RALEl~~K~K~~-v~ 701 (737)
T KOG1524|consen 639 HIKALTSKEEQMAENSLMLGRMLEAETILLHG----------------GLIEQAVGLNIRMHNWRRALELSQKHKEL-VP 701 (737)
T ss_pred HHhccCcHHHHHHHHHHHhccchhhhHHHHhc----------------chHHHhhhhhhhhhhHHHHHHHHHhHHHH-HH
Q ss_pred CChHHHHHHHHHhhhcc
Q 039029 295 PDDNTYFSLIEGIASVD 311 (319)
Q Consensus 295 ~~~~~~~~l~~~~~~~g 311 (319)
.-..--...+++|.+..
T Consensus 702 ~Vl~yR~KyLk~~g~~E 718 (737)
T KOG1524|consen 702 RVLQYRRKYLKALGREE 718 (737)
T ss_pred HHHHHHHHHHHHhcccc
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.18 E-value=2.9e+02 Score=22.74 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCccH----HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 039029 132 KKAFSLHDEMIHKGIQPTM----LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194 (319)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (319)
++++.+++.+... -|+. ..|..+++.....|.++.++.+|++++..|..|-...-..++..
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3455555544443 2232 23444445555556666666666666666555544444444443
No 490
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.14 E-value=3.1e+02 Score=23.19 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=37.4
Q ss_pred HHHHHHHHhh---hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHhCCCC
Q 039029 153 YTSLIFVLSK---QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN-----IERAFSLLKEMDRMKVH 217 (319)
Q Consensus 153 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 217 (319)
...++.++.+ ..+.+.+..++..|.+.|..|....-..+..++...|. ...+...++.....|.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 3344444443 47888889999999988877664444444444443332 23344455555556644
No 491
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=32.10 E-value=1.4e+02 Score=20.66 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHh
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI 307 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 307 (319)
+...++ .+.+.|-..+...++++|.+.|+..+...+..+++-.
T Consensus 112 tlGvL~-~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLA-LAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHH-HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 444444 4556788889999999999999999999998877644
No 492
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=32.07 E-value=2.5e+02 Score=21.98 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=19.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHh
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKE 38 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~ 38 (319)
.+.++..+.+.+....|..+.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 46677777787888888888777654
No 493
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=31.86 E-value=1.3e+02 Score=18.49 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCC
Q 039029 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254 (319)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 254 (319)
+.....++..+.. ++++++...+.++...|..+.
T Consensus 5 ~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~ 38 (89)
T PF08542_consen 5 PEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS 38 (89)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH
Confidence 3334445555443 366666666666666665433
No 494
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.80 E-value=2.9e+02 Score=22.70 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHhhCCCCCCh----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 96 MVEADDMLKEMGEKGIVPDS----ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
.+++..+++.++.. .|++ .-|-.+++.....|.++.++.+|++.+..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45777788877765 2343 4678888999999999999999999999998888777777777655
No 495
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.73 E-value=3.6e+02 Score=23.79 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=8.4
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 039029 122 INGYCRCGNAKKAFSLHDEM 141 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~ 141 (319)
+.-|.+.++.++|..++..|
T Consensus 415 ~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 415 ISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHhcCCHHHHHHHHHhC
Confidence 33444444444444444333
No 496
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.29 E-value=1.6e+02 Score=19.41 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=6.5
Q ss_pred ChHHHHHHHHHHHhC
Q 039029 25 RLEEASRMLEQMKEN 39 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~ 39 (319)
..++|..+.+.+...
T Consensus 21 cH~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 21 CHQEANTIADWLEQE 35 (116)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 344444444444443
No 497
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.24 E-value=1.1e+02 Score=17.55 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=15.3
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 039029 21 CKEGRLEEASRMLEQMKENGLVPTAVTYNTLID 53 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 53 (319)
...|++=+|-++++.+-.....+....+..+|+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 345666666666666554322233334444443
No 498
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.20 E-value=1.7e+02 Score=19.80 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHH
Q 039029 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLR 286 (319)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 286 (319)
..++|..|..+++-.... ..|......+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~A------lfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLA------LFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhH------HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445566666655543322 344555555556666666666654
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.16 E-value=1.5e+02 Score=19.13 Aligned_cols=54 Identities=9% Similarity=-0.076 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHH
Q 039029 63 MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (319)
...+.+++....+....+-....|...|++.|+.+.+.+-|+.-... -|...+|
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~f 108 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVF 108 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhH
Confidence 33455555555543333333444555677777777777777664432 3444444
No 500
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=3.6e+02 Score=23.52 Aligned_cols=217 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhCC-CCC-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH---------HHHHHHHHHHh
Q 039029 97 VEADDMLKEMGEKG-IVP-----DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM---------LTYTSLIFVLS 161 (319)
Q Consensus 97 ~~a~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~ 161 (319)
++++...++.++.. ..| ...+...++.+-.-.|++.+|++-+..|.+....... .....+..-+.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred hhccHHHHHHHHHHHhhCCCCccHHHHHHH--HHHHhcCCcHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHcC
Q 039029 162 KQNRMIEADQLFENFLAKGMLPDIVMFNAL--IDGHCTNGNIERAFSLLKEMDRMKVHPD------EVTYNTLMHGRCRQ 233 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 233 (319)
..+.++.|+..|....+.-..-|...+..+ .-.|.+.|+.+.-.++++.+...+..+- ...+-.-.-.....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCCChHH-------HHHHHH
Q 039029 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GITPDDNT-------YFSLIE 305 (319)
Q Consensus 234 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~-------~~~l~~ 305 (319)
+++.+|...+.+-.+.....+. +....-....+...+...|+..++.+...-..+. .-.||..+ |..+.+
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~--~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~ 536 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDL--NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQ 536 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhH--HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHH
Q ss_pred Hhhhcchhhh
Q 039029 306 GIASVDKAAE 315 (319)
Q Consensus 306 ~~~~~g~~~~ 315 (319)
++...|.-++
T Consensus 537 a~g~~~~~~e 546 (629)
T KOG2300|consen 537 ALGEKGNEME 546 (629)
T ss_pred HhCcchhhHH
Done!